Query psy145
Match_columns 203
No_of_seqs 117 out of 185
Neff 4.6
Searched_HMMs 46136
Date Fri Aug 16 21:21:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy145.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/145hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1625|consensus 100.0 2.2E-43 4.8E-48 334.0 14.4 163 27-190 199-381 (600)
2 COG5214 POL12 DNA polymerase a 100.0 1.3E-35 2.9E-40 274.9 11.9 159 25-190 154-345 (581)
3 PRK04036 DNA polymerase II sma 98.2 1.5E-05 3.2E-10 76.2 12.1 116 64-191 152-294 (504)
4 PF08418 Pol_alpha_B_N: DNA po 97.0 0.0002 4.3E-09 62.1 0.1 27 25-58 205-231 (253)
5 KOG3818|consensus 90.8 0.88 1.9E-05 44.2 7.3 69 63-144 174-245 (525)
6 KOG2732|consensus 87.2 5.2 0.00011 38.5 9.6 97 62-168 64-184 (435)
7 PF03100 CcmE: CcmE; InterPro 84.6 7.7 0.00017 30.9 8.2 74 63-139 48-122 (131)
8 cd03238 ABC_UvrA The excision 77.3 2 4.3E-05 35.8 2.5 32 99-131 5-36 (176)
9 cd03298 ABC_ThiQ_thiamine_tran 75.3 1.6 3.4E-05 36.0 1.4 26 109-134 17-42 (211)
10 PRK13254 cytochrome c-type bio 72.6 36 0.00079 28.1 8.8 75 63-141 49-124 (148)
11 PRK13541 cytochrome c biogenes 70.2 2.4 5.3E-05 34.7 1.4 25 110-134 20-44 (195)
12 cd03269 ABC_putative_ATPase Th 70.0 2.5 5.3E-05 34.9 1.4 26 109-134 19-44 (210)
13 PF00005 ABC_tran: ABC transpo 69.8 2.5 5.5E-05 32.0 1.3 27 110-136 5-31 (137)
14 PRK14262 phosphate ABC transpo 69.4 2.6 5.6E-05 35.8 1.4 32 106-137 19-50 (250)
15 PRK13540 cytochrome c biogenes 69.0 2.8 6E-05 34.5 1.5 28 107-134 18-45 (200)
16 cd03231 ABC_CcmA_heme_exporter 68.7 2.8 6E-05 34.6 1.4 26 106-131 16-41 (201)
17 PF05582 Peptidase_U57: YabG p 67.7 4.5 9.7E-05 37.1 2.6 25 172-196 145-169 (287)
18 PF13567 DUF4131: Domain of un 67.5 31 0.00067 26.1 7.0 59 65-124 75-140 (176)
19 cd03226 ABC_cobalt_CbiO_domain 67.4 3.1 6.7E-05 34.2 1.4 28 107-134 17-44 (205)
20 PRK14247 phosphate ABC transpo 67.4 3.1 6.7E-05 35.3 1.5 30 107-136 20-49 (250)
21 cd03259 ABC_Carb_Solutes_like 67.1 3.1 6.8E-05 34.3 1.4 28 107-134 17-44 (213)
22 TIGR01166 cbiO cobalt transpor 67.1 3.1 6.8E-05 33.8 1.4 27 108-134 10-36 (190)
23 TIGR02855 spore_yabG sporulati 67.1 5.1 0.00011 36.7 2.8 24 172-195 144-167 (283)
24 cd03266 ABC_NatA_sodium_export 66.9 3.1 6.8E-05 34.3 1.4 29 106-134 21-49 (218)
25 PRK09493 glnQ glutamine ABC tr 66.8 3.2 6.8E-05 35.0 1.4 29 106-134 17-45 (240)
26 cd03250 ABCC_MRP_domain1 Domai 66.7 3.5 7.6E-05 33.9 1.6 25 106-130 21-45 (204)
27 cd03292 ABC_FtsE_transporter F 66.5 3.2 7E-05 34.1 1.4 29 106-134 17-45 (214)
28 cd03254 ABCC_Glucan_exporter_l 66.4 3.3 7.1E-05 34.5 1.4 29 106-134 19-47 (229)
29 PRK14255 phosphate ABC transpo 66.2 3.3 7.2E-05 35.2 1.4 31 106-136 21-51 (252)
30 PRK13538 cytochrome c biogenes 66.2 3.3 7.2E-05 34.2 1.4 29 106-134 17-45 (204)
31 cd03214 ABC_Iron-Siderophores_ 66.1 3.4 7.4E-05 33.5 1.4 28 107-134 16-43 (180)
32 cd03216 ABC_Carb_Monos_I This 66.0 3.4 7.3E-05 33.2 1.4 28 107-134 17-44 (163)
33 TIGR03740 galliderm_ABC gallid 65.9 3.4 7.3E-05 34.4 1.4 29 106-134 16-44 (223)
34 TIGR03873 F420-0_ABC_ATP propo 65.7 3.4 7.4E-05 35.3 1.4 29 106-134 17-45 (256)
35 PRK00741 prfC peptide chain re 65.4 14 0.00029 36.1 5.6 35 111-145 354-390 (526)
36 TIGR02673 FtsE cell division A 65.3 3.6 7.7E-05 33.9 1.4 28 107-134 19-46 (214)
37 PRK14239 phosphate transporter 65.2 3.5 7.6E-05 34.9 1.4 30 107-136 22-51 (252)
38 PRK09984 phosphonate/organopho 65.2 3.5 7.5E-05 35.4 1.4 29 106-134 20-48 (262)
39 cd03301 ABC_MalK_N The N-termi 65.1 3.6 7.8E-05 33.9 1.4 28 107-134 17-44 (213)
40 cd03229 ABC_Class3 This class 65.0 3.7 8E-05 33.2 1.4 26 109-134 19-44 (178)
41 PRK11701 phnK phosphonate C-P 65.0 3.5 7.7E-05 35.2 1.4 31 107-137 23-53 (258)
42 TIGR03608 L_ocin_972_ABC putat 65.0 3.6 7.7E-05 33.6 1.4 29 106-134 14-42 (206)
43 cd03295 ABC_OpuCA_Osmoprotecti 64.7 3.7 8E-05 34.7 1.4 26 109-134 20-45 (242)
44 TIGR02770 nickel_nikD nickel i 64.7 3.7 8E-05 34.5 1.4 29 109-137 5-33 (230)
45 PRK14249 phosphate ABC transpo 64.6 3.7 8E-05 34.9 1.4 28 107-134 21-48 (251)
46 cd03299 ABC_ModC_like Archeal 64.5 3.7 8E-05 34.7 1.4 29 106-134 15-43 (235)
47 cd03223 ABCD_peroxisomal_ALDP 64.5 3.8 8.3E-05 33.0 1.4 25 107-131 18-42 (166)
48 CHL00131 ycf16 sulfate ABC tra 64.4 3.7 8E-05 34.8 1.4 29 106-134 23-51 (252)
49 cd03225 ABC_cobalt_CbiO_domain 64.4 3.7 8E-05 33.8 1.3 27 108-134 19-45 (211)
50 PRK10584 putative ABC transpor 64.2 3.8 8.3E-05 34.2 1.4 29 106-134 26-54 (228)
51 cd03219 ABC_Mj1267_LivG_branch 64.1 3.7 8.1E-05 34.3 1.4 31 106-136 16-46 (236)
52 cd03235 ABC_Metallic_Cations A 64.0 3.9 8.4E-05 33.8 1.4 27 106-132 15-41 (213)
53 PRK13644 cbiO cobalt transport 63.9 3.7 8.1E-05 35.8 1.4 26 109-134 21-46 (274)
54 PRK13539 cytochrome c biogenes 63.9 3.9 8.5E-05 33.9 1.4 29 106-134 18-46 (207)
55 cd03244 ABCC_MRP_domain2 Domai 63.9 3.9 8.6E-05 33.8 1.4 27 106-132 20-46 (221)
56 PRK10895 lipopolysaccharide AB 63.6 4 8.7E-05 34.4 1.5 26 107-132 20-45 (241)
57 cd03265 ABC_DrrA DrrA is the A 63.5 4 8.7E-05 33.9 1.4 28 107-134 17-44 (220)
58 cd03300 ABC_PotA_N PotA is an 63.4 4.1 8.8E-05 34.3 1.5 29 106-134 16-44 (232)
59 PRK10247 putative ABC transpor 63.4 4 8.7E-05 34.2 1.4 29 106-134 23-51 (225)
60 cd03249 ABC_MTABC3_MDL1_MDL2 M 63.4 4.2 9.2E-05 34.1 1.6 27 108-134 21-47 (238)
61 PRK14241 phosphate transporter 63.2 3.9 8.5E-05 35.0 1.4 32 106-137 20-51 (258)
62 PRK14240 phosphate transporter 63.2 4.1 8.9E-05 34.5 1.4 31 107-137 20-50 (250)
63 cd03260 ABC_PstB_phosphate_tra 63.1 4.1 8.9E-05 33.9 1.4 29 109-137 19-47 (227)
64 cd03256 ABC_PhnC_transporter A 63.1 4.1 9E-05 34.1 1.4 29 106-134 17-45 (241)
65 cd03247 ABCC_cytochrome_bd The 63.0 4.2 9.1E-05 32.8 1.4 26 109-134 21-46 (178)
66 PRK13543 cytochrome c biogenes 62.9 4.3 9.2E-05 33.8 1.5 26 106-131 27-52 (214)
67 cd03224 ABC_TM1139_LivF_branch 62.4 4.1 8.9E-05 33.7 1.3 28 107-134 17-44 (222)
68 TIGR00960 3a0501s02 Type II (G 62.4 4.3 9.4E-05 33.5 1.4 26 109-134 22-47 (216)
69 cd03261 ABC_Org_Solvent_Resist 62.2 4.4 9.5E-05 34.0 1.4 26 109-134 19-44 (235)
70 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 62.1 4.4 9.5E-05 34.1 1.4 23 108-130 40-62 (224)
71 TIGR03864 PQQ_ABC_ATP ABC tran 62.1 4.4 9.5E-05 34.1 1.4 28 109-136 20-47 (236)
72 PRK13548 hmuV hemin importer A 62.0 4.4 9.5E-05 34.9 1.4 29 106-134 18-46 (258)
73 TIGR01189 ccmA heme ABC export 62.0 4.5 9.7E-05 33.1 1.4 28 107-134 17-44 (198)
74 cd03296 ABC_CysA_sulfate_impor 61.9 4.5 9.7E-05 34.2 1.4 30 107-136 19-48 (239)
75 cd03262 ABC_HisP_GlnQ_permease 61.9 4.5 9.8E-05 33.2 1.4 29 106-134 16-44 (213)
76 cd03218 ABC_YhbG The ABC trans 61.9 4.4 9.6E-05 33.8 1.4 28 107-134 17-44 (232)
77 PRK14273 phosphate ABC transpo 61.9 4.5 9.8E-05 34.4 1.5 30 107-136 24-53 (254)
78 TIGR00968 3a0106s01 sulfate AB 61.8 4.4 9.6E-05 34.3 1.4 29 108-136 18-46 (237)
79 PRK11124 artP arginine transpo 61.7 4.5 9.8E-05 34.1 1.4 27 108-134 20-46 (242)
80 PRK10771 thiQ thiamine transpo 61.7 4.5 9.7E-05 34.0 1.4 26 109-134 18-43 (232)
81 TIGR01978 sufC FeS assembly AT 61.6 5 0.00011 33.6 1.7 33 106-138 16-48 (243)
82 PRK13647 cbiO cobalt transport 61.4 4.4 9.5E-05 35.3 1.3 26 109-134 24-49 (274)
83 PRK13652 cbiO cobalt transport 61.4 4.5 9.7E-05 35.3 1.4 26 109-134 23-48 (277)
84 PRK14268 phosphate ABC transpo 61.2 4.6 9.9E-05 34.6 1.4 32 106-137 28-59 (258)
85 cd03245 ABCC_bacteriocin_expor 61.1 4.7 0.0001 33.3 1.4 28 107-134 21-48 (220)
86 PRK11629 lolD lipoprotein tran 60.9 4.7 0.0001 33.9 1.4 28 107-134 26-53 (233)
87 PRK14272 phosphate ABC transpo 60.9 4.8 0.0001 34.1 1.4 31 106-136 20-50 (252)
88 PRK09544 znuC high-affinity zi 60.6 4.7 0.0001 34.8 1.4 23 109-131 23-45 (251)
89 cd03228 ABCC_MRP_Like The MRP 60.5 5 0.00011 32.2 1.4 25 106-130 18-42 (171)
90 cd03221 ABCF_EF-3 ABCF_EF-3 E 60.5 5 0.00011 31.6 1.4 26 109-134 19-44 (144)
91 TIGR02211 LolD_lipo_ex lipopro 60.4 4.9 0.00011 33.2 1.4 27 108-134 23-49 (221)
92 cd03253 ABCC_ATM1_transporter 60.4 4.9 0.00011 33.6 1.4 27 108-134 19-45 (236)
93 cd04479 RPA3 RPA3: A subfamily 60.3 73 0.0016 24.2 8.1 62 66-138 16-77 (101)
94 PRK14242 phosphate transporter 59.6 5.1 0.00011 34.0 1.4 32 106-137 22-53 (253)
95 TIGR02324 CP_lyasePhnL phospho 59.5 5.2 0.00011 33.2 1.4 29 106-134 24-52 (224)
96 TIGR01394 TypA_BipA GTP-bindin 59.4 1.5E+02 0.0032 29.6 11.6 25 110-134 261-287 (594)
97 PRK14235 phosphate transporter 59.4 5.1 0.00011 34.6 1.4 32 106-137 35-66 (267)
98 PRK14251 phosphate ABC transpo 59.4 5.2 0.00011 33.9 1.4 27 108-134 22-48 (251)
99 PRK14253 phosphate ABC transpo 59.2 5.2 0.00011 33.9 1.4 31 106-136 19-49 (249)
100 PRK14265 phosphate ABC transpo 59.2 13 0.00029 32.3 4.0 55 81-137 12-67 (274)
101 cd03230 ABC_DR_subfamily_A Thi 59.1 5.3 0.00012 32.1 1.4 29 106-134 16-44 (173)
102 cd03263 ABC_subfamily_A The AB 59.1 5.3 0.00011 33.0 1.4 28 107-134 19-46 (220)
103 PRK13639 cbiO cobalt transport 59.0 5.2 0.00011 34.8 1.4 26 109-134 21-46 (275)
104 cd03288 ABCC_SUR2 The SUR doma 59.0 5.3 0.00011 34.3 1.4 24 109-132 40-63 (257)
105 PRK10418 nikD nickel transport 59.0 5.3 0.00011 34.2 1.4 31 106-136 19-49 (254)
106 PRK13649 cbiO cobalt transport 58.9 5.2 0.00011 34.7 1.4 28 107-134 24-51 (280)
107 PRK10908 cell division protein 58.9 5.4 0.00012 33.2 1.4 28 107-134 19-46 (222)
108 cd03246 ABCC_Protease_Secretio 58.5 5.7 0.00012 32.0 1.4 25 109-133 21-45 (173)
109 TIGR02315 ABC_phnC phosphonate 58.4 5.6 0.00012 33.4 1.5 29 106-134 18-46 (243)
110 PRK10575 iron-hydroxamate tran 58.3 5.6 0.00012 34.3 1.5 29 106-134 27-55 (265)
111 cd03252 ABCC_Hemolysin The ABC 58.3 5.6 0.00012 33.4 1.4 27 108-134 20-46 (237)
112 cd03369 ABCC_NFT1 Domain 2 of 58.2 5.7 0.00012 32.7 1.4 29 106-134 24-52 (207)
113 cd03251 ABCC_MsbA MsbA is an e 58.2 5.7 0.00012 33.2 1.4 26 109-134 21-46 (234)
114 cd03255 ABC_MJ0796_Lo1CDE_FtsE 58.1 5.8 0.00012 32.8 1.4 30 107-136 21-50 (218)
115 PRK14250 phosphate ABC transpo 57.8 5.8 0.00013 33.6 1.4 29 106-134 19-47 (241)
116 PF01973 MAF_flag10: Protein o 57.7 15 0.00033 29.6 3.8 32 159-190 25-56 (170)
117 TIGR00972 3a0107s01c2 phosphat 57.7 5.8 0.00013 33.6 1.4 29 108-136 19-47 (247)
118 TIGR03411 urea_trans_UrtD urea 57.7 5.7 0.00012 33.4 1.4 31 106-136 18-48 (242)
119 PRK13546 teichoic acids export 57.7 5.7 0.00012 34.7 1.4 27 106-132 40-66 (264)
120 PRK14261 phosphate ABC transpo 57.6 5.7 0.00012 33.8 1.4 30 107-136 23-52 (253)
121 PRK15056 manganese/iron transp 57.5 5.8 0.00012 34.4 1.4 26 108-133 25-50 (272)
122 PRK14270 phosphate ABC transpo 57.4 5.9 0.00013 33.7 1.4 31 107-137 21-51 (251)
123 cd03293 ABC_NrtD_SsuB_transpor 57.2 5.9 0.00013 32.9 1.4 28 107-134 21-48 (220)
124 cd03217 ABC_FeS_Assembly ABC-t 57.2 6.3 0.00014 32.5 1.5 31 106-136 16-46 (200)
125 TIGR00503 prfC peptide chain r 57.2 25 0.00054 34.3 5.8 68 69-144 313-390 (527)
126 PRK14259 phosphate ABC transpo 57.2 5.8 0.00013 34.4 1.4 32 106-137 29-60 (269)
127 cd03258 ABC_MetN_methionine_tr 57.1 6 0.00013 33.1 1.4 29 106-134 21-49 (233)
128 PRK14248 phosphate ABC transpo 57.1 5.9 0.00013 34.1 1.4 29 108-136 39-67 (268)
129 PRK14252 phosphate ABC transpo 57.0 6 0.00013 34.1 1.4 30 107-136 33-62 (265)
130 PRK11300 livG leucine/isoleuci 57.0 5.8 0.00013 33.6 1.3 29 106-134 21-49 (255)
131 PRK14266 phosphate ABC transpo 56.7 6.1 0.00013 33.5 1.4 31 106-136 19-49 (250)
132 PRK11248 tauB taurine transpor 56.7 6.1 0.00013 34.1 1.4 26 109-134 20-45 (255)
133 PRK10253 iron-enterobactin tra 55.5 6.8 0.00015 33.8 1.5 29 106-134 23-51 (265)
134 PRK13646 cbiO cobalt transport 55.4 6.4 0.00014 34.5 1.4 29 108-136 25-53 (286)
135 TIGR02982 heterocyst_DevA ABC 55.3 6.8 0.00015 32.6 1.4 29 106-134 21-49 (220)
136 PRK10218 GTP-binding protein; 55.3 1.9E+02 0.0041 28.9 11.6 61 69-134 221-291 (607)
137 TIGR02769 nickel_nikE nickel i 55.2 6.8 0.00015 33.8 1.5 29 106-134 27-55 (265)
138 TIGR03005 ectoine_ehuA ectoine 55.1 6.8 0.00015 33.3 1.4 26 109-134 19-44 (252)
139 PRK13641 cbiO cobalt transport 55.0 6.5 0.00014 34.5 1.3 30 107-136 24-53 (287)
140 cd03234 ABCG_White The White s 55.0 7 0.00015 32.7 1.5 28 107-134 24-51 (226)
141 PRK13632 cbiO cobalt transport 55.0 6.7 0.00015 34.0 1.4 29 106-134 25-53 (271)
142 PRK14256 phosphate ABC transpo 55.0 6.8 0.00015 33.3 1.4 29 106-134 20-48 (252)
143 PRK14244 phosphate ABC transpo 54.8 6.9 0.00015 33.2 1.4 29 109-137 24-52 (251)
144 PRK10744 pstB phosphate transp 54.2 7.1 0.00015 33.5 1.4 31 106-136 29-59 (260)
145 PRK14260 phosphate ABC transpo 54.0 7.1 0.00015 33.5 1.4 32 106-137 23-54 (259)
146 cd03213 ABCG_EPDR ABCG transpo 54.0 7.7 0.00017 31.9 1.5 29 106-134 25-53 (194)
147 cd03232 ABC_PDR_domain2 The pl 54.0 7.5 0.00016 31.9 1.5 29 106-134 23-51 (192)
148 cd03691 BipA_TypA_II BipA_TypA 53.9 51 0.0011 23.5 5.7 17 109-125 60-76 (86)
149 PRK13638 cbiO cobalt transport 53.8 7.2 0.00016 33.7 1.4 29 106-134 17-45 (271)
150 PRK14236 phosphate transporter 53.8 7.2 0.00016 33.8 1.4 30 107-136 42-71 (272)
151 PRK11264 putative amino-acid A 53.8 7.4 0.00016 32.9 1.4 29 106-134 19-47 (250)
152 TIGR01288 nodI ATP-binding ABC 53.7 7.2 0.00016 34.5 1.4 28 107-134 21-48 (303)
153 cd03233 ABC_PDR_domain1 The pl 53.5 7.2 0.00016 32.3 1.3 29 106-134 23-51 (202)
154 PRK11231 fecE iron-dicitrate t 53.1 7.7 0.00017 33.1 1.4 28 107-134 19-46 (255)
155 PRK14246 phosphate ABC transpo 53.1 7.4 0.00016 33.6 1.4 29 106-134 26-54 (257)
156 cd03248 ABCC_TAP TAP, the Tran 52.8 7.8 0.00017 32.2 1.4 29 106-134 30-58 (226)
157 cd03267 ABC_NatA_like Similar 52.7 7.7 0.00017 32.8 1.4 29 106-134 37-65 (236)
158 PRK14238 phosphate transporter 52.6 7.8 0.00017 33.7 1.4 32 107-138 41-72 (271)
159 TIGR01277 thiQ thiamine ABC tr 52.6 7.7 0.00017 32.1 1.3 25 109-133 17-41 (213)
160 cd03215 ABC_Carb_Monos_II This 52.5 8 0.00017 31.4 1.4 26 106-131 16-41 (182)
161 PRK10419 nikE nickel transport 52.5 7.9 0.00017 33.6 1.4 29 106-134 28-56 (268)
162 TIGR01184 ntrCD nitrate transp 52.4 7.9 0.00017 32.6 1.4 25 110-134 5-29 (230)
163 cd03257 ABC_NikE_OppD_transpor 52.4 8.1 0.00017 32.0 1.4 29 106-134 21-49 (228)
164 PRK14271 phosphate ABC transpo 52.2 7.9 0.00017 33.8 1.4 32 106-137 37-68 (276)
165 PRK14275 phosphate ABC transpo 52.0 8 0.00017 34.0 1.4 29 108-136 57-85 (286)
166 cd03268 ABC_BcrA_bacitracin_re 51.9 8.2 0.00018 31.7 1.4 27 108-134 18-44 (208)
167 PRK14269 phosphate ABC transpo 51.6 8.2 0.00018 32.7 1.4 30 108-137 20-49 (246)
168 PRK03695 vitamin B12-transport 51.2 8.5 0.00018 32.9 1.4 29 106-134 12-40 (248)
169 PRK11247 ssuB aliphatic sulfon 51.0 8.5 0.00018 33.5 1.4 25 109-133 31-55 (257)
170 cd00267 ABC_ATPase ABC (ATP-bi 50.3 9.2 0.0002 30.0 1.4 28 109-136 18-45 (157)
171 PRK13637 cbiO cobalt transport 50.3 8.5 0.00018 33.8 1.3 26 109-134 26-51 (287)
172 PRK13648 cbiO cobalt transport 49.7 9.2 0.0002 33.0 1.4 27 108-134 27-53 (269)
173 cd04090 eEF2_II_snRNP Loc2 eEF 49.5 47 0.001 24.4 5.0 17 109-125 67-83 (94)
174 PRK13643 cbiO cobalt transport 49.3 8.9 0.00019 33.7 1.3 27 108-134 24-50 (288)
175 cd03699 lepA_II lepA_II: This 49.1 88 0.0019 22.5 6.4 53 67-124 15-72 (86)
176 TIGR03410 urea_trans_UrtE urea 48.9 9.9 0.00021 31.7 1.4 28 107-134 17-44 (230)
177 TIGR03771 anch_rpt_ABC anchore 48.9 9.1 0.0002 32.1 1.2 20 111-130 1-20 (223)
178 PRK10619 histidine/lysine/argi 48.5 9.8 0.00021 32.5 1.4 29 106-134 21-49 (257)
179 TIGR02323 CP_lyasePhnK phospho 48.5 9.8 0.00021 32.3 1.4 29 106-134 19-47 (253)
180 PRK13645 cbiO cobalt transport 48.3 9.7 0.00021 33.3 1.4 30 107-136 28-57 (289)
181 PRK11614 livF leucine/isoleuci 48.1 9.9 0.00021 31.9 1.3 26 109-134 24-49 (237)
182 PRK13537 nodulation ABC transp 48.0 9.9 0.00021 33.9 1.4 31 106-136 23-53 (306)
183 PRK13636 cbiO cobalt transport 47.7 10 0.00022 33.2 1.4 26 109-134 25-50 (283)
184 PRK05813 single-stranded DNA-b 47.7 51 0.0011 28.9 5.7 59 65-124 8-74 (219)
185 PRK14245 phosphate ABC transpo 47.6 10 0.00023 32.1 1.4 28 109-136 22-49 (250)
186 cd03291 ABCC_CFTR1 The CFTR su 47.6 10 0.00022 33.6 1.4 26 109-134 56-81 (282)
187 PRK09580 sufC cysteine desulfu 47.5 11 0.00023 31.8 1.4 31 107-137 18-48 (248)
188 PRK13536 nodulation factor exp 47.5 10 0.00022 34.6 1.4 27 108-134 59-85 (340)
189 PRK14237 phosphate transporter 47.2 11 0.00023 32.7 1.4 30 107-136 37-66 (267)
190 TIGR01188 drrA daunorubicin re 47.1 11 0.00023 33.4 1.4 26 109-134 12-37 (302)
191 PRK13634 cbiO cobalt transport 46.9 10 0.00022 33.4 1.3 26 109-134 26-51 (290)
192 PRK11831 putative ABC transpor 46.9 11 0.00023 32.7 1.4 26 109-134 26-51 (269)
193 PRK14243 phosphate transporter 46.8 11 0.00024 32.5 1.5 30 107-136 27-56 (264)
194 PRK11819 putative ABC transpor 46.5 11 0.00025 36.2 1.6 28 106-133 23-50 (556)
195 PRK15177 Vi polysaccharide exp 46.3 12 0.00026 31.4 1.6 25 110-134 7-31 (213)
196 PRK13633 cobalt transporter AT 46.1 11 0.00024 32.8 1.4 29 106-134 26-54 (280)
197 PRK14267 phosphate ABC transpo 45.7 12 0.00025 31.8 1.4 29 106-134 20-48 (253)
198 cd03237 ABC_RNaseL_inhibitor_d 45.6 10 0.00023 32.7 1.1 26 109-134 18-43 (246)
199 cd03294 ABC_Pro_Gly_Bertaine T 45.3 12 0.00026 32.5 1.4 26 109-134 43-68 (269)
200 PRK14264 phosphate ABC transpo 45.3 12 0.00025 33.3 1.4 32 106-137 61-92 (305)
201 PRK13642 cbiO cobalt transport 45.2 12 0.00025 32.7 1.4 27 108-134 25-51 (277)
202 PRK13650 cbiO cobalt transport 44.5 12 0.00026 32.7 1.4 29 106-134 23-51 (279)
203 cd02067 B12-binding B12 bindin 44.4 26 0.00056 26.4 3.0 25 168-192 37-61 (119)
204 TIGR00619 sbcd exonuclease Sbc 43.6 21 0.00046 31.0 2.8 23 169-191 27-49 (253)
205 PRK14254 phosphate ABC transpo 43.6 13 0.00028 32.7 1.4 30 107-136 56-85 (285)
206 COG4133 CcmA ABC-type transpor 43.5 14 0.0003 32.5 1.5 27 104-130 16-42 (209)
207 PRK13547 hmuV hemin importer A 43.5 13 0.00028 32.6 1.4 30 107-136 18-47 (272)
208 cd04092 mtEFG2_II_like mtEFG2_ 43.5 72 0.0016 22.6 5.1 59 67-131 15-81 (83)
209 PF04016 DUF364: Domain of unk 43.4 89 0.0019 25.2 6.2 77 112-190 7-96 (147)
210 PRK15118 universal stress glob 42.8 29 0.00063 26.4 3.1 30 161-190 83-112 (144)
211 PRK14258 phosphate ABC transpo 42.7 14 0.00029 31.8 1.4 31 106-136 23-53 (261)
212 TIGR03522 GldA_ABC_ATP gliding 42.5 13 0.00028 32.9 1.2 29 108-136 20-48 (301)
213 PRK15005 universal stress prot 42.2 43 0.00094 25.2 4.0 30 159-188 85-114 (144)
214 cd03278 ABC_SMC_barmotin Barmo 42.0 17 0.00037 30.3 1.8 26 110-136 17-42 (197)
215 cd03290 ABCC_SUR1_N The SUR do 41.9 15 0.00032 30.5 1.4 28 109-136 20-47 (218)
216 PRK10938 putative molybdenum t 41.1 15 0.00032 34.6 1.4 26 106-131 19-44 (490)
217 PF12683 DUF3798: Protein of u 41.0 28 0.00061 31.8 3.2 32 160-191 63-96 (275)
218 PRK14257 phosphate ABC transpo 40.4 15 0.00033 33.3 1.4 35 106-140 98-132 (329)
219 PRK15112 antimicrobial peptide 40.2 16 0.00035 31.6 1.4 27 106-132 29-55 (267)
220 PRK14274 phosphate ABC transpo 39.8 16 0.00035 31.2 1.4 28 109-136 31-58 (259)
221 COG2332 CcmE Cytochrome c-type 39.7 32 0.00068 29.0 3.0 87 50-140 30-124 (153)
222 PRK13635 cbiO cobalt transport 39.4 16 0.00035 31.9 1.4 28 109-136 26-53 (279)
223 PRK10636 putative ABC transpor 38.9 17 0.00037 35.9 1.6 28 107-134 18-45 (638)
224 PRK14263 phosphate ABC transpo 38.9 17 0.00037 31.4 1.4 29 108-136 26-54 (261)
225 TIGR02633 xylG D-xylose ABC tr 38.3 17 0.00036 34.3 1.3 30 107-136 18-47 (500)
226 COG4107 PhnK ABC-type phosphon 37.8 21 0.00045 31.7 1.8 25 109-133 25-49 (258)
227 cd03689 RF3_II RF3_II: this su 37.4 1.3E+02 0.0029 21.8 5.8 58 68-131 17-82 (85)
228 PRK13150 cytochrome c-type bio 37.1 2.5E+02 0.0055 23.6 8.2 72 64-139 56-129 (159)
229 PRK11153 metN DL-methionine tr 37.1 18 0.00039 32.8 1.3 26 109-134 24-49 (343)
230 PRK15064 ABC transporter ATP-b 36.9 20 0.00043 34.2 1.6 27 107-133 18-44 (530)
231 cd00293 USP_Like Usp: Universa 36.7 70 0.0015 22.5 4.2 33 158-190 70-102 (130)
232 PRK11308 dppF dipeptide transp 36.7 19 0.00041 32.6 1.4 34 106-139 31-64 (327)
233 cd03264 ABC_drug_resistance_li 36.6 17 0.00038 29.8 1.1 26 108-134 18-43 (211)
234 PRK13640 cbiO cobalt transport 36.2 19 0.00042 31.4 1.3 26 109-134 26-51 (282)
235 PRK09700 D-allose transporter 35.9 19 0.00042 34.0 1.4 26 109-134 282-307 (510)
236 PF14836 Ubiquitin_3: Ubiquiti 35.7 55 0.0012 25.0 3.6 32 99-130 52-86 (88)
237 PRK11147 ABC transporter ATPas 35.5 20 0.00043 35.2 1.4 26 108-133 21-46 (635)
238 PRK13631 cbiO cobalt transport 35.4 20 0.00044 32.3 1.4 26 109-134 45-70 (320)
239 PF12857 TOBE_3: TOBE-like dom 35.2 73 0.0016 21.6 3.8 35 87-122 20-56 (58)
240 PRK09700 D-allose transporter 35.2 20 0.00044 33.9 1.4 27 107-133 22-48 (510)
241 TIGR02633 xylG D-xylose ABC tr 34.8 21 0.00045 33.7 1.4 28 109-136 279-306 (500)
242 cd03289 ABCC_CFTR2 The CFTR su 34.7 22 0.00047 31.5 1.4 27 108-134 22-48 (275)
243 PRK10982 galactose/methyl gala 34.6 21 0.00045 33.6 1.4 27 108-134 16-42 (491)
244 PRK11022 dppD dipeptide transp 34.6 21 0.00045 32.3 1.3 35 106-140 23-57 (326)
245 cd00840 MPP_Mre11_N Mre11 nucl 34.5 38 0.00083 27.4 2.7 23 169-191 29-51 (223)
246 cd02071 MM_CoA_mut_B12_BD meth 34.1 67 0.0014 24.7 3.9 19 171-189 68-87 (122)
247 cd03222 ABC_RNaseL_inhibitor T 34.0 22 0.00047 29.6 1.2 24 111-134 20-43 (177)
248 COG1122 CbiO ABC-type cobalt t 33.8 23 0.0005 31.0 1.4 22 109-130 23-44 (235)
249 PRK10938 putative molybdenum t 33.8 23 0.00049 33.3 1.4 28 109-136 279-306 (490)
250 PRK11147 ABC transporter ATPas 33.7 22 0.00047 35.0 1.4 28 107-134 336-363 (635)
251 PRK10762 D-ribose transporter 33.4 22 0.00048 33.6 1.3 28 107-134 21-48 (501)
252 TIGR03719 ABC_ABC_ChvD ATP-bin 33.3 23 0.0005 34.0 1.4 28 109-136 341-368 (552)
253 PRK13165 cytochrome c-type bio 32.9 3E+02 0.0065 23.2 8.4 71 64-139 56-129 (160)
254 PRK11288 araG L-arabinose tran 32.3 24 0.00052 33.4 1.4 28 107-134 21-48 (501)
255 PRK15064 ABC transporter ATP-b 32.3 24 0.00053 33.6 1.4 26 109-134 338-363 (530)
256 PRK15439 autoinducer 2 ABC tra 32.1 26 0.00056 33.4 1.5 29 108-136 281-309 (510)
257 TIGR03719 ABC_ABC_ChvD ATP-bin 32.0 27 0.00058 33.6 1.6 26 106-131 21-46 (552)
258 PRK13651 cobalt transporter AT 31.6 25 0.00055 31.4 1.3 26 109-134 26-51 (305)
259 PRK11340 phosphodiesterase Yae 31.5 44 0.00095 29.2 2.8 22 169-190 68-89 (271)
260 TIGR02142 modC_ABC molybdenum 31.4 26 0.00056 31.9 1.4 25 110-134 17-41 (354)
261 cd04088 EFG_mtEFG_II EFG_mtEFG 30.6 51 0.0011 23.2 2.5 23 109-131 57-81 (83)
262 COG0543 UbiB 2-polyprenylpheno 30.4 1.2E+02 0.0026 26.3 5.3 30 162-191 111-145 (252)
263 PRK09536 btuD corrinoid ABC tr 30.0 26 0.00057 32.9 1.2 27 108-134 21-47 (402)
264 PRK05813 single-stranded DNA-b 30.0 1.1E+02 0.0025 26.7 5.1 61 63-125 107-177 (219)
265 PRK11819 putative ABC transpor 29.9 28 0.00061 33.5 1.4 28 109-136 343-370 (556)
266 cd07039 TPP_PYR_POX Pyrimidine 29.8 1E+02 0.0022 25.0 4.5 43 161-203 66-111 (164)
267 PHA02546 47 endonuclease subun 29.6 48 0.001 30.1 2.8 27 169-196 27-53 (340)
268 PRK10636 putative ABC transpor 29.6 29 0.00062 34.3 1.4 28 107-134 329-356 (638)
269 PRK13549 xylose transporter AT 29.5 28 0.0006 33.0 1.3 28 107-134 22-49 (506)
270 PF02310 B12-binding: B12 bind 29.4 65 0.0014 23.8 3.1 21 170-190 40-60 (121)
271 PRK13549 xylose transporter AT 29.2 31 0.00067 32.7 1.5 29 109-137 281-309 (506)
272 cd01130 VirB11-like_ATPase Typ 28.9 69 0.0015 26.1 3.4 79 112-192 21-111 (186)
273 PRK09473 oppD oligopeptide tra 28.8 28 0.0006 31.6 1.1 34 107-140 33-66 (330)
274 PRK15079 oligopeptide ABC tran 28.8 31 0.00066 31.3 1.4 33 106-138 37-69 (331)
275 PRK11000 maltose/maltodextrin 28.2 31 0.00067 31.7 1.3 26 108-133 21-46 (369)
276 PRK10116 universal stress prot 28.0 94 0.002 23.3 3.8 31 160-190 81-111 (142)
277 cd01121 Sms Sms (bacterial rad 27.6 33 0.00071 32.0 1.4 97 100-196 62-173 (372)
278 PRK15134 microcin C ABC transp 27.5 32 0.00069 32.8 1.3 31 108-138 27-57 (529)
279 TIGR03415 ABC_choXWV_ATP choli 27.4 32 0.0007 32.2 1.3 26 109-134 43-68 (382)
280 PRK15439 autoinducer 2 ABC tra 26.9 34 0.00074 32.5 1.4 24 109-132 30-53 (510)
281 cd03270 ABC_UvrA_I The excisio 26.8 36 0.00077 28.8 1.4 24 109-132 14-37 (226)
282 PF04023 FeoA: FeoA domain; I 26.7 77 0.0017 21.8 2.9 27 109-135 29-55 (74)
283 TIGR00215 lpxB lipid-A-disacch 26.6 60 0.0013 29.8 2.9 24 171-194 79-102 (385)
284 PRK11144 modC molybdate transp 26.5 35 0.00077 31.1 1.4 25 110-134 18-42 (352)
285 TIGR02314 ABC_MetN D-methionin 26.5 35 0.00076 31.3 1.4 29 106-134 21-49 (343)
286 PRK10851 sulfate/thiosulfate t 26.5 36 0.00077 31.3 1.4 26 109-134 21-46 (353)
287 TIGR03269 met_CoM_red_A2 methy 26.0 36 0.00079 32.2 1.4 27 108-134 18-44 (520)
288 PRK10762 D-ribose transporter 25.8 37 0.00079 32.1 1.4 28 109-136 271-298 (501)
289 PRK10966 exonuclease subunit S 25.7 59 0.0013 30.6 2.8 26 169-195 27-52 (407)
290 COG1137 YhbG ABC-type (unclass 25.5 52 0.0011 29.5 2.2 27 110-136 24-50 (243)
291 PRK11288 araG L-arabinose tran 25.1 38 0.00083 32.0 1.4 26 109-134 272-297 (501)
292 PRK15093 antimicrobial peptide 25.0 40 0.00086 30.4 1.4 34 107-140 24-57 (330)
293 COG1535 EntB Isochorismate hyd 24.9 58 0.0013 28.7 2.3 21 171-191 132-152 (218)
294 PRK09982 universal stress prot 24.9 1.1E+02 0.0025 23.4 3.8 30 159-188 81-110 (142)
295 PRK10982 galactose/methyl gala 24.2 43 0.00093 31.5 1.5 26 109-134 267-292 (491)
296 PF00582 Usp: Universal stress 24.0 1.3E+02 0.0028 21.3 3.7 34 158-191 79-112 (140)
297 TIGR00583 mre11 DNA repair pro 24.0 67 0.0014 30.5 2.7 26 170-196 31-56 (405)
298 PRK13545 tagH teichoic acids e 23.6 43 0.00092 33.4 1.4 25 106-130 40-64 (549)
299 PRK10261 glutathione transport 23.2 44 0.00095 32.8 1.4 30 109-138 343-372 (623)
300 TIGR01110 mdcA malonate decarb 23.1 45 0.00097 33.2 1.4 84 111-194 36-151 (543)
301 TIGR00150 HI0065_YjeE ATPase, 23.0 22 0.00047 28.7 -0.6 39 112-150 18-56 (133)
302 cd03770 SR_TndX_transposase Se 22.9 75 0.0016 24.9 2.5 28 168-195 55-82 (140)
303 TIGR02370 pyl_corrinoid methyl 22.8 1.2E+02 0.0027 25.4 3.9 24 169-192 123-146 (197)
304 COG2163 RPL14A Ribosomal prote 22.7 81 0.0018 25.6 2.6 25 112-136 4-29 (125)
305 COG0410 LivF ABC-type branched 22.5 52 0.0011 29.5 1.6 32 110-141 23-54 (237)
306 cd06189 flavin_oxioreductase N 22.5 3.3E+02 0.0072 22.4 6.4 18 113-132 76-93 (224)
307 PRK10261 glutathione transport 22.2 45 0.00099 32.7 1.3 29 109-137 35-63 (623)
308 cd03243 ABC_MutS_homologs The 22.0 58 0.0013 26.8 1.7 27 110-136 23-49 (202)
309 COG4559 ABC-type hemin transpo 21.7 52 0.0011 29.8 1.4 22 109-130 20-41 (259)
310 PRK13409 putative ATPase RIL; 21.7 50 0.0011 32.5 1.5 22 109-130 358-379 (590)
311 PRK15456 universal stress prot 21.6 1.5E+02 0.0032 22.5 3.8 32 159-190 83-114 (142)
312 cd01829 SGNH_hydrolase_peri2 S 21.6 93 0.002 24.8 2.8 26 170-195 48-74 (200)
313 cd00338 Ser_Recombinase Serine 21.5 88 0.0019 23.5 2.5 28 168-195 52-79 (137)
314 COG2248 Predicted hydrolase (m 21.5 80 0.0017 29.2 2.6 35 158-192 175-212 (304)
315 cd03236 ABC_RNaseL_inhibitor_d 21.5 49 0.0011 28.8 1.2 18 113-130 23-40 (255)
316 TIGR03269 met_CoM_red_A2 methy 21.2 52 0.0011 31.2 1.4 26 109-134 303-328 (520)
317 smart00857 Resolvase Resolvase 21.1 86 0.0019 24.0 2.4 28 168-195 52-79 (148)
318 PF08660 Alg14: Oligosaccharid 21.0 71 0.0015 26.5 2.1 20 172-191 83-102 (170)
319 PF15628 RRM_DME: RRM in Demet 20.7 48 0.001 26.2 0.9 22 119-140 9-31 (103)
320 cd02070 corrinoid_protein_B12- 20.6 1.1E+02 0.0023 25.7 3.0 25 169-193 121-145 (201)
321 PRK11650 ugpC glycerol-3-phosp 20.3 55 0.0012 30.1 1.4 25 109-133 23-47 (356)
322 cd06218 DHOD_e_trans FAD/NAD b 20.2 2.7E+02 0.0059 23.6 5.6 19 112-132 75-93 (246)
323 PRK10070 glycine betaine trans 20.2 51 0.0011 31.0 1.1 29 106-134 44-72 (400)
324 cd07400 MPP_YydB Bacillus subt 20.1 1E+02 0.0022 23.4 2.6 21 170-190 24-44 (144)
No 1
>KOG1625|consensus
Probab=100.00 E-value=2.2e-43 Score=334.01 Aligned_cols=163 Identities=27% Similarity=0.380 Sum_probs=144.7
Q ss_pred CcccccccccchhHHHhhhh----ccchh--ccc-cccccCccCccccEEEEEEEeeCC--CCCCCCcceeEEEeeccCC
Q psy145 27 SAYRIPWISNLSQFNAIIGL----GTVTI--GDI-TLLVPFLFGDTTEITAIGRIVCDT--SDGKLNAASVLLEGDEVTS 97 (203)
Q Consensus 27 ~~yrYMyek~~d~~e~L~e~----~~vl~--~~I-eef~~~~~~sq~~v~vvGRI~~Ds--~egkLn~~Sv~LEgsr~~g 97 (203)
.+|||||+|..|++|.|..| +..+. ..| ++|+++..+||++|++||||+||+ .+||||++||+||+||+.|
T Consensus 199 ~~~~~m~dkl~d~~e~l~~Ri~~~~~~~~~~~~~~ed~~~p~~~Sq~~v~avG~I~~d~~~~~~kln~~Sv~Less~e~~ 278 (600)
T KOG1625|consen 199 PSYRYMYDKLSDRSEVLRDRIESFAPAIQESYLISEDFANPSIPSQSSVYAVGQIVCDSTKDNGKLNEESVLLESSREDS 278 (600)
T ss_pred cchhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCCcccccccceEEEEEEecCCCCcccccCccceEeeeccccC
Confidence 49999999999999977765 44443 446 999999999999999999999998 3589999999999999999
Q ss_pred CceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccCCCCCCCCCccccccccccccceEEEEcCc--------
Q psy145 98 GGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGL-------- 168 (203)
Q Consensus 98 ~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p~lp~p~s~~~~~~~~~~~~l~i~~A~GP-------- 168 (203)
+|+||+|||++ ++||+|||||||+||+|++|++|+|++||++||||.|.+..++++..+...+ ||+||||
T Consensus 279 ~g~~Vrldls~l~e~SiFPGQIVavkG~N~~G~~l~v~ki~~~~plp~~~~~~qed~~~~~~~~-ivvasGPyt~sDnl~ 357 (600)
T KOG1625|consen 279 SGVRVRLDLSRLKEYSIFPGQIVAVKGKNPTGEKLTVEKILPIPPLPIPVQPLQEDATFEANTV-IVVASGPYTASDNLS 357 (600)
T ss_pred CCceEEeehhhccceeecCCcEEEEeeecCCCCeEEeeeeccCCCCCCCcCchhhhhhccccce-EEEEecCccCccccc
Confidence 99999999999 9999999999999999999999999999999999977766666654333346 9999999
Q ss_pred --ChHHHHHHHHhcCCCeEEEeee
Q psy145 169 --PLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 169 --pL~DLL~~v~~~~PdvLvlt~~ 190 (203)
||+|||.||++++||||||+|-
T Consensus 358 yepL~dll~~v~~~~pdvLIL~GP 381 (600)
T KOG1625|consen 358 YEPLCDLLDYVNAERPDVLILFGP 381 (600)
T ss_pred hhHHHHHHHHHhcCCCCEEEEecc
Confidence 5569999999999999999994
No 2
>COG5214 POL12 DNA polymerase alpha-primase complex, polymerase-associated subunit B [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.3e-35 Score=274.89 Aligned_cols=159 Identities=24% Similarity=0.297 Sum_probs=140.1
Q ss_pred CCCcccccccccchhHHHhhhhccchhcc---------------ccccccCccCccccEEEEEEEeeCCC--CCCCCcce
Q psy145 25 QPSAYRIPWISNLSQFNAIIGLGTVTIGD---------------ITLLVPFLFGDTTEITAIGRIVCDTS--DGKLNAAS 87 (203)
Q Consensus 25 ~~~~yrYMyek~~d~~e~L~e~~~vl~~~---------------Ieef~~~~~~sq~~v~vvGRI~~Ds~--egkLn~~S 87 (203)
++++||+||. +|-+.+++|+++ +|+|++++..||+++|+||||+.+++ ++|||+.|
T Consensus 154 k~~~~r~m~q-------~L~~~s~vlddrielfs~~~~~~y~ls~eDfa~p~~~sqs~~y~vGrIv~~s~~~g~~Ln~eS 226 (581)
T COG5214 154 KPRVSRFMYQ-------KLRKKSKVLDDRIELFSMKPYFLYLLSIEDFAPPNNVSQSSFYTVGRIVNPSTNFGHKLNSES 226 (581)
T ss_pred chhHHHHHHH-------HHhhhhhhhHHHHHHHhhhhHHHhcCCHhhcCCccccccCceEEEEEecCCCcccccccCcce
Confidence 5689999994 455555555554 55888999999999999999999984 36999999
Q ss_pred eEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccCCCCC-CCCCccccccc----cccccce
Q psy145 88 VLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSDASLP-LSETRPALDQN----TEMYKLR 161 (203)
Q Consensus 88 v~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p~lp-~p~s~~~~~~~----~~~~~l~ 161 (203)
|+||+||+.|.|.||+|||+. ++||+|||||||+||+|+.|++|.|++|+.+|++| .|+++.++.+. .+-.+++
T Consensus 227 v~lesSr~gg~gvrVRL~l~~l~~yS~FpGQIVavKGkN~~G~~ftv~~ilpiP~~p~~p~s~~qE~~~fqan~~~q~~~ 306 (581)
T COG5214 227 VFLESSRDGGNGVRVRLNLAHLQRYSVFPGQIVAVKGKNTDGGKFTVEAILPIPVVPINPASDGQEKKYFQANTNNQPTS 306 (581)
T ss_pred eeeeeecccCCCeEEEeehhhccccccccccEEEEecccCCCCeEEeeeeeccCCcCCCcCcchhhhhhhccccCCCceE
Confidence 999999999999999999999 99999999999999999999999999999999999 88888776642 2336899
Q ss_pred EEEEcCc----------ChHHHHHHHHhcCCCeEEEeee
Q psy145 162 VSYEKGL----------PLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 162 i~~A~GP----------pL~DLL~~v~~~~PdvLvlt~~ 190 (203)
|+++||| ||.|.+.+|.++.-|||||.|-
T Consensus 307 iv~~sGPy~~~dd~s~~pl~~~id~vn~n~vdvlIl~GP 345 (581)
T COG5214 307 IVAFSGPYGPRDDLSGSPLFDAIDRVNANDVDVLILIGP 345 (581)
T ss_pred EEEEcCCCCCccccCcChHHHHHHHhccCCccEEEEecc
Confidence 9999998 6789999999999999999985
No 3
>PRK04036 DNA polymerase II small subunit; Validated
Probab=98.22 E-value=1.5e-05 Score=76.22 Aligned_cols=116 Identities=13% Similarity=0.168 Sum_probs=74.5
Q ss_pred ccccEEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEeecCC-C----c--ceecCCcEEEEEee-cCCCCeEEEee
Q psy145 64 DTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPE-T----G--VAVFPGQIVAARGS-NPSRNQFIATK 135 (203)
Q Consensus 64 sq~~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ldls~-~----~--~SLFPGQIVavkG~-N~~G~~fvV~e 135 (203)
..+.++++|.|. |-.+.+=+...+.||-. ..||+|.+++ + . -.|++|+|||++|. +..|+.|.|++
T Consensus 152 ~~~~~~viG~v~-~~~~~~~g~~~~~LED~-----sgrv~l~~~~~~~~~~~~~~~lvtg~vv~v~G~~~~~g~~f~v~~ 225 (504)
T PRK04036 152 GGEEVSIIGMVS-DIRSTKNGHKIVELEDT-----TGTFPVLIMKDREDLAELADELLLDEVIGVEGTLSGDGGLIFADE 225 (504)
T ss_pred CCceEEEEEEEE-EeecccCCceEEEEECC-----CCeEEEEeecchhhhhhhhhcccCceEEEEEEEEcCCCCEEEEEE
Confidence 568899999995 42111111125788864 4788998865 3 2 26999999999999 55666999999
Q ss_pred cccCCCCCCCCCccccccccccccceEEEEcCc----------ChHHHHHHHH---------hcCCCeEEEeeeh
Q psy145 136 IYSDASLPLSETRPALDQNTEMYKLRVSYEKGL----------PLADYLVNVF---------EKSYNSAFITTVA 191 (203)
Q Consensus 136 I~~~p~lp~p~s~~~~~~~~~~~~l~i~~A~GP----------pL~DLL~~v~---------~~~PdvLvlt~~~ 191 (203)
|+-+...+. .+.+... ....+++-||- .+..|++++. +.+||.+||+|--
T Consensus 226 i~~p~~p~~-~~~~~~~-----~~~~i~~ISDlHlgs~~~~~~~l~~li~~L~g~~~~~~~~~~~~d~lVIaGDi 294 (504)
T PRK04036 226 IIRPDVPRT-KEPPTKD-----EKVYAVFISDVHVGSKEFLEDAFEKFIDWLNGEVGNEEEIASRVKYLIIAGDL 294 (504)
T ss_pred EECCCCCcc-CCCCcCC-----CccEEEEEcccCCCCcchhHHHHHHHHHHHhCCCccchhhhhcCCEEEEeCcc
Confidence 975543332 1111111 23444444441 2345677777 7889999999953
No 4
>PF08418 Pol_alpha_B_N: DNA polymerase alpha subunit B N-terminal; InterPro: IPR013627 This is the eukaryotic DNA polymerase alpha subunit B N-terminal domain which is involved in complex formation []. ; PDB: 4E2I_9 2KEB_A 3FLO_G.
Probab=96.96 E-value=0.0002 Score=62.06 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=10.7
Q ss_pred CCCcccccccccchhHHHhhhhccchhccccccc
Q psy145 25 QPSAYRIPWISNLSQFNAIIGLGTVTIGDITLLV 58 (203)
Q Consensus 25 ~~~~yrYMyek~~d~~e~L~e~~~vl~~~Ieef~ 58 (203)
+-++|||||+ +|.++++|||++|++|+
T Consensus 205 ~k~~yr~M~~-------kL~e~sevLDdrId~f~ 231 (253)
T PF08418_consen 205 KKYKYRYMFQ-------KLSERSEVLDDRIDEFA 231 (253)
T ss_dssp -------S----------HHHHHHHHHHHHHHHH
T ss_pred cccCchHHHH-------HHHHHHHHHHHHHHHHH
Confidence 3389999994 56666666666655433
No 5
>KOG3818|consensus
Probab=90.82 E-value=0.88 Score=44.19 Aligned_cols=69 Identities=19% Similarity=0.237 Sum_probs=50.7
Q ss_pred CccccEEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEeecCC--Ccceec-CCcEEEEEeecCCCCeEEEeecccC
Q psy145 63 GDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPE--TGVAVF-PGQIVAARGSNPSRNQFIATKIYSD 139 (203)
Q Consensus 63 ~sq~~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ldls~--~~~SLF-PGQIVavkG~N~~G~~fvV~eI~~~ 139 (203)
..-..+++.|.+.--- +| ...||.- ...|.||+++ -+..|| ||.+|.++|.-.+ +.|.|.++= .
T Consensus 174 ~~~~~~lvLGlLTq~k-~G-----~~~lEDp-----sgsVqlDlsqa~fh~glf~egC~VL~EG~f~~-~vf~V~~lg-~ 240 (525)
T KOG3818|consen 174 RALQSFLVLGLLTQLK-EG-----KFHLEDP-----SGSVQLDLSQAKFHHGLFCEGCFVLVEGTFES-GVFHVNELG-F 240 (525)
T ss_pred ccccceeeeehhhhcc-CC-----cEEEeCC-----CCcEEEeecccccccceeccceEEEEeeeeec-ceEEEeecc-C
Confidence 3445677888877544 45 4678864 3579999999 667777 9999999999877 699999874 4
Q ss_pred CCCCC
Q psy145 140 ASLPL 144 (203)
Q Consensus 140 p~lp~ 144 (203)
||..+
T Consensus 241 PP~E~ 245 (525)
T KOG3818|consen 241 PPVER 245 (525)
T ss_pred CCCCc
Confidence 44443
No 6
>KOG2732|consensus
Probab=87.25 E-value=5.2 Score=38.50 Aligned_cols=97 Identities=18% Similarity=0.322 Sum_probs=65.5
Q ss_pred cCccc-cEEEEEEEeeCCC-----------CCCC-----------CcceeEEEeeccCCCceEEEeecCC-CcceecCCc
Q psy145 62 FGDTT-EITAIGRIVCDTS-----------DGKL-----------NAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQ 117 (203)
Q Consensus 62 ~~sq~-~v~vvGRI~~Ds~-----------egkL-----------n~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQ 117 (203)
...++ +.++||-|.+... +.++ -+..++||.. -+||+|..+. +..-+==|-
T Consensus 64 l~~~~~~C~vVGTlfk~~~lKPsIl~~v~~e~~~~p~~~~~~y~~ped~i~LEDe-----~grV~L~G~~i~~~~~vTGv 138 (435)
T KOG2732|consen 64 LEKGKGECWVVGTLFKAMALKPSILDEVSNEHKVAPDPEESNYHSPEDEIVLEDE-----SGRVRLEGSFISHAVLVTGV 138 (435)
T ss_pred eccCCccEEEEEehhhhcccCcHHHHHHhhhhccCCCCcccccCCccceEEEecC-----CceEEEEeecccccceeeeE
Confidence 44455 9999999998641 0010 0224666652 4799999988 888888999
Q ss_pred EEEEEeecCCCCeEEEeecccCCCCCCCCCccccccccccccceEEEEcCc
Q psy145 118 IVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGL 168 (203)
Q Consensus 118 IVavkG~N~~G~~fvV~eI~~~p~lp~p~s~~~~~~~~~~~~l~i~~A~GP 168 (203)
+||+-|.-..-+.|.|+.|+-.-..|...+.+... ..-.|...||.
T Consensus 139 vvavlG~~~e~G~F~VeDv~fp~~~pq~~P~~~~~-----~~~~i~lVSGL 184 (435)
T KOG2732|consen 139 VVAVLGKEAEAGRFLVEDVLFPGSSPQGKPRATLP-----SQRKIALVSGL 184 (435)
T ss_pred EEEEecccccCceEEEEEEeccCCCccCCCCCcCC-----CCCEEEEEecc
Confidence 99999999988999999997665554322222111 12357777774
No 7
>PF03100 CcmE: CcmE; InterPro: IPR004329 CcmE is the product of one of a cluster of Ccm genes that are necessary for cytochrome c biosynthesis in eubacteria. Expression of these proteins is induced when the organisms are grown under anaerobic conditions with nitrate or nitrite as the final electron acceptor.; GO: 0017003 protein-heme linkage, 0017004 cytochrome complex assembly, 0005886 plasma membrane; PDB: 1SR3_A 2KCT_A 1J6Q_A 1LM0_A.
Probab=84.65 E-value=7.7 Score=30.91 Aligned_cols=74 Identities=15% Similarity=0.128 Sum_probs=48.1
Q ss_pred CccccEEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccC
Q psy145 63 GDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSD 139 (203)
Q Consensus 63 ~sq~~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~ 139 (203)
.....+.+-|.|..++-+-.-++..+...-.+. +..++....+ ..-.|-.||-|+++|+-..++.|.+++|+.-
T Consensus 48 ~~~~~vrv~G~V~~gSv~~~~~~~~~~F~i~D~---~~~i~V~Y~G~~Pd~F~eg~~VVv~G~~~~~g~F~A~~lL~K 122 (131)
T PF03100_consen 48 KVGRKVRVGGLVVEGSVEYDPDGNTLTFTITDG---GKEIPVVYTGPLPDLFREGQGVVVEGRLGEDGVFEATELLAK 122 (131)
T ss_dssp -TTSEEEEEEEEECTTEEE-TTSSEEEEEEE-S---S-EEEEEEES--CTT--TTSEEEEEEEECCTSEEEEEEEEET
T ss_pred cCCceEEEeeEEccCCEEEcCCCCEEEEEEEEC---CcEEEEEECCCCCccccCCCeEEEEEEECCCCEEEEEEEEeC
Confidence 366788999998876511111233333333222 5778888888 5556669999999999978889999999753
No 8
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=77.28 E-value=2 Score=35.75 Aligned_cols=32 Identities=19% Similarity=0.229 Sum_probs=26.0
Q ss_pred ceEEEeecCCCcceecCCcEEEEEeecCCCCeE
Q psy145 99 GRSISLKLPETGVAVFPGQIVAARGSNPSRNQF 131 (203)
Q Consensus 99 G~rV~Ldls~~~~SLFPGQIVavkG~N~~G~~f 131 (203)
|.+++. |++-++++-||++|++.|.|..|++=
T Consensus 5 ~~~~~~-l~~isl~i~~G~~~~l~G~nG~GKST 36 (176)
T cd03238 5 GANVHN-LQNLDVSIPLNVLVVVTGVSGSGKST 36 (176)
T ss_pred ceeeee-ecceEEEEcCCCEEEEECCCCCCHHH
Confidence 566665 66678999999999999999988543
No 9
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=75.25 E-value=1.6 Score=36.03 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=21.3
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++.||+++++-|.|.+|.+-..+
T Consensus 17 is~~i~~Ge~~~l~G~nGsGKSTLl~ 42 (211)
T cd03298 17 FDLTFAQGEITAIVGPSGSGKSTLLN 42 (211)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 35899999999999999988654443
No 10
>PRK13254 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=72.61 E-value=36 Score=28.08 Aligned_cols=75 Identities=12% Similarity=0.090 Sum_probs=49.8
Q ss_pred CccccEEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccCCC
Q psy145 63 GDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSDAS 141 (203)
Q Consensus 63 ~sq~~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p~ 141 (203)
.....|.+.|.|...+-+ +-+...+...-.+. +..++....+ ..=.|--||-|+++|+--.++.|.+++|+.-=+
T Consensus 49 ~~g~~vrvgG~V~~gSi~-~~~~~~~~F~ltD~---~~~i~V~Y~G~lPd~F~eg~~VVv~G~~~~~g~F~A~~vLaKc~ 124 (148)
T PRK13254 49 PAGRRFRLGGLVEKGSVQ-RGDGLTVRFVVTDG---NATVPVVYTGILPDLFREGQGVVAEGRLQDGGVFVADEVLAKHD 124 (148)
T ss_pred cCCCeEEEeEEEecCcEE-eCCCCEEEEEEEeC---CeEEEEEECCCCCccccCCCEEEEEEEECCCCeEEEEEEEecCC
Confidence 456679999999865511 11222333332222 5778888887 333466799999999987667999999976443
No 11
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=70.17 E-value=2.4 Score=34.72 Aligned_cols=25 Identities=16% Similarity=0.352 Sum_probs=20.2
Q ss_pred cceecCCcEEEEEeecCCCCeEEEe
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++++-||+++++-|.|.+|++-..+
T Consensus 20 s~~i~~Ge~~~l~G~nGsGKSTLl~ 44 (195)
T PRK13541 20 SITFLPSAITYIKGANGCGKSSLLR 44 (195)
T ss_pred EEEEcCCcEEEEECCCCCCHHHHHH
Confidence 5889999999999999988554333
No 12
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=70.03 E-value=2.5 Score=34.86 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=21.8
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|.+|++-.++
T Consensus 19 v~~~i~~G~~~~i~G~nGsGKSTLl~ 44 (210)
T cd03269 19 ISFSVEKGEIFGLLGPNGAGKTTTIR 44 (210)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 56899999999999999998665444
No 13
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=69.84 E-value=2.5 Score=31.98 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=22.6
Q ss_pred cceecCCcEEEEEeecCCCCeEEEeec
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++.+-||+++++-|.|.+|.+-.++-|
T Consensus 5 ~~~i~~g~~~~i~G~nGsGKStLl~~l 31 (137)
T PF00005_consen 5 SLEIKPGEIVAIVGPNGSGKSTLLKAL 31 (137)
T ss_dssp EEEEETTSEEEEEESTTSSHHHHHHHH
T ss_pred EEEEcCCCEEEEEccCCCccccceeee
Confidence 478899999999999999987666544
No 14
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=69.45 E-value=2.6 Score=35.78 Aligned_cols=32 Identities=19% Similarity=0.273 Sum_probs=25.2
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
|++-++++.||++|++.|.|.+|.+-..+=|.
T Consensus 19 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14262 19 VKNVTMKIFKNQITAIIGPSGCGKTTLLRSIN 50 (250)
T ss_pred EeeeeEeecCCCEEEEECCCCCCHHHHHHHHh
Confidence 33357999999999999999999776665443
No 15
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=68.99 E-value=2.8 Score=34.53 Aligned_cols=28 Identities=14% Similarity=0.254 Sum_probs=22.7
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||++|++.|.|.+|.+-..+
T Consensus 18 ~~~s~~i~~Ge~~~l~G~nGsGKSTLl~ 45 (200)
T PRK13540 18 QQISFHLPAGGLLHLKGSNGAGKTTLLK 45 (200)
T ss_pred eeeeEEECCCCEEEEECCCCCCHHHHHH
Confidence 3367999999999999999988655444
No 16
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=68.66 E-value=2.8 Score=34.60 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=21.2
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeE
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQF 131 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~f 131 (203)
|++-++++.||++|++-|.|.+|.+-
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKST 41 (201)
T cd03231 16 FSGLSFTLAAGEALQVTGPNGSGKTT 41 (201)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHH
Confidence 33467999999999999999988543
No 17
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=67.73 E-value=4.5 Score=37.07 Aligned_cols=25 Identities=12% Similarity=-0.011 Sum_probs=19.2
Q ss_pred HHHHHHHhcCCCeEEEeeehhhhcc
Q psy145 172 DYLVNVFEKSYNSAFITTVADFHRA 196 (203)
Q Consensus 172 DLL~~v~~~~PdvLvlt~~~~~~~~ 196 (203)
-+.+.+.+.+||+|||||..-+.+.
T Consensus 145 ~i~~Ll~~~~PDIlViTGHD~~~K~ 169 (287)
T PF05582_consen 145 KIYRLLEEYRPDILVITGHDGYLKN 169 (287)
T ss_pred HHHHHHHHcCCCEEEEeCchhhhcC
Confidence 4556678899999999998766543
No 18
>PF13567 DUF4131: Domain of unknown function (DUF4131)
Probab=67.51 E-value=31 Score=26.07 Aligned_cols=59 Identities=22% Similarity=0.279 Sum_probs=37.2
Q ss_pred cccEEEEEEEeeCCCCCCCCcceeEEE------eeccCCCceEEEeecCC-CcceecCCcEEEEEee
Q psy145 65 TTEITAIGRIVCDTSDGKLNAASVLLE------GDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGS 124 (203)
Q Consensus 65 q~~v~vvGRI~~Ds~egkLn~~Sv~LE------gsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~ 124 (203)
...+++.|+|.... ...=......++ +........+|.+.+.+ ..-.+-|||.+.++|+
T Consensus 75 ~~~~~v~g~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~Gd~i~~~g~ 140 (176)
T PF13567_consen 75 GKEVTVQGTVESVP-QIDGRGQRFTLRVERVLAGGNWIPVSGKILLYLPKDSQPRLQPGDRIRVRGK 140 (176)
T ss_pred CceEEEEEEEcccc-cccCceEEEEEEEEEeeccccccccceeeEEEeccccccccCCCCEEEEEEE
Confidence 77888999997665 211111134444 22233345777777777 3336999999999995
No 19
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=67.40 E-value=3.1 Score=34.22 Aligned_cols=28 Identities=21% Similarity=0.466 Sum_probs=22.0
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++-|.|.+|++=..+
T Consensus 17 ~~v~~~i~~Ge~~~i~G~nGsGKSTLl~ 44 (205)
T cd03226 17 DDLSLDLYAGEIIALTGKNGAGKTTLAK 44 (205)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 3356899999999999999988654433
No 20
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=67.39 E-value=3.1 Score=35.30 Aligned_cols=30 Identities=13% Similarity=0.116 Sum_probs=23.9
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-++++-||+++++-|.|.+|++-..+=|
T Consensus 20 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i 49 (250)
T PRK14247 20 DGVNLEIPDNTITALMGPSGSGKSTLLRVF 49 (250)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 335689999999999999999976655533
No 21
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=67.14 E-value=3.1 Score=34.32 Aligned_cols=28 Identities=18% Similarity=0.312 Sum_probs=22.6
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++-|.|.+|.+-..+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 44 (213)
T cd03259 17 DDLSLTVEPGEFLALLGPSGCGKTTLLR 44 (213)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHH
Confidence 3357999999999999999999664443
No 22
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=67.09 E-value=3.1 Score=33.76 Aligned_cols=27 Identities=19% Similarity=0.217 Sum_probs=22.3
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-||+++++-|.|.+|.+-..+
T Consensus 10 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~ 36 (190)
T TIGR01166 10 GLNFAAERGEVLALLGANGAGKSTLLL 36 (190)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 356899999999999999999765444
No 23
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=67.08 E-value=5.1 Score=36.66 Aligned_cols=24 Identities=17% Similarity=0.072 Sum_probs=18.8
Q ss_pred HHHHHHHhcCCCeEEEeeehhhhc
Q psy145 172 DYLVNVFEKSYNSAFITTVADFHR 195 (203)
Q Consensus 172 DLL~~v~~~~PdvLvlt~~~~~~~ 195 (203)
-+...+.+.+||+|||||..-+.+
T Consensus 144 ~i~~Ll~~~~PDIlViTGHD~~~K 167 (283)
T TIGR02855 144 KVLDLIEEVRPDILVITGHDAYSK 167 (283)
T ss_pred HHHHHHHHhCCCEEEEeCchhhhc
Confidence 455566889999999999876654
No 24
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=66.85 E-value=3.1 Score=34.34 Aligned_cols=29 Identities=17% Similarity=0.272 Sum_probs=23.2
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||++|++.|.|.+|.+-..+
T Consensus 21 l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~ 49 (218)
T cd03266 21 VDGVSFTVKPGEVTGLLGPNGAGKTTTLR 49 (218)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 34456999999999999999998665444
No 25
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=66.76 E-value=3.2 Score=35.01 Aligned_cols=29 Identities=17% Similarity=0.261 Sum_probs=23.2
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|++-..+
T Consensus 17 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~ 45 (240)
T PRK09493 17 LHNIDLNIDQGEVVVIIGPSGSGKSTLLR 45 (240)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHH
Confidence 33457999999999999999999764444
No 26
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=66.68 E-value=3.5 Score=33.87 Aligned_cols=25 Identities=28% Similarity=0.351 Sum_probs=20.6
Q ss_pred cCCCcceecCCcEEEEEeecCCCCe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~ 130 (203)
|++-++++-||+++++.|.|.+|++
T Consensus 21 l~~~s~~i~~G~~~~i~G~nG~GKS 45 (204)
T cd03250 21 LKDINLEVPKGELVAIVGPVGSGKS 45 (204)
T ss_pred eeeeeEEECCCCEEEEECCCCCCHH
Confidence 3345699999999999999998843
No 27
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=66.50 E-value=3.2 Score=34.08 Aligned_cols=29 Identities=14% Similarity=0.245 Sum_probs=22.8
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|.+-..+
T Consensus 17 l~~~sl~i~~G~~~~i~G~nGsGKSTLl~ 45 (214)
T cd03292 17 LDGINISISAGEFVFLVGPSGAGKSTLLK 45 (214)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33356899999999999999999764443
No 28
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=66.39 E-value=3.3 Score=34.49 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=22.8
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++.|||++++-|.|.+|+.-..+
T Consensus 19 l~~isl~i~~G~~~~i~G~nGsGKSTLl~ 47 (229)
T cd03254 19 LKDINFSIKPGETVAIVGPTGAGKTTLIN 47 (229)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33467999999999999999988554443
No 29
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=66.24 E-value=3.3 Score=35.15 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=24.6
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
|++-++++-||+++++-|.|.+|++-..+=|
T Consensus 21 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l 51 (252)
T PRK14255 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTL 51 (252)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3446799999999999999999977555533
No 30
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=66.22 E-value=3.3 Score=34.17 Aligned_cols=29 Identities=14% Similarity=0.266 Sum_probs=23.3
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++.||+++++-|.|.+|++-..+
T Consensus 17 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~ 45 (204)
T PRK13538 17 FSGLSFTLNAGELVQIEGPNGAGKTSLLR 45 (204)
T ss_pred EecceEEECCCcEEEEECCCCCCHHHHHH
Confidence 44467999999999999999988654444
No 31
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=66.11 E-value=3.4 Score=33.49 Aligned_cols=28 Identities=18% Similarity=0.317 Sum_probs=22.0
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++.+-||+++++.|.|.+|.+-..+
T Consensus 16 ~~~~~~i~~G~~~~l~G~nGsGKStLl~ 43 (180)
T cd03214 16 DDLSLSIEAGEIVGILGPNGAGKSTLLK 43 (180)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHH
Confidence 3357889999999999999988654333
No 32
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=66.02 E-value=3.4 Score=33.17 Aligned_cols=28 Identities=18% Similarity=0.235 Sum_probs=22.5
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||++|++.|.|.+|..-..+
T Consensus 17 ~~i~~~i~~Ge~~~l~G~nGsGKSTLl~ 44 (163)
T cd03216 17 DGVSLSVRRGEVHALLGENGAGKSTLMK 44 (163)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 3356999999999999999988655444
No 33
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=65.88 E-value=3.4 Score=34.44 Aligned_cols=29 Identities=10% Similarity=0.146 Sum_probs=22.8
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-+|++-||+++++-|.|.+|.+-..+
T Consensus 16 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 44 (223)
T TIGR03740 16 VNNISLTVPKNSVYGLLGPNGAGKSTLLK 44 (223)
T ss_pred EeeeEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 34457999999999999999988654444
No 34
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=65.67 E-value=3.4 Score=35.29 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=22.7
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||++|++-|.|.+|.+-..+
T Consensus 17 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~ 45 (256)
T TIGR03873 17 VDGVDVTAPPGSLTGLLGPNGSGKSTLLR 45 (256)
T ss_pred EeeeeEEEcCCcEEEEECCCCCCHHHHHH
Confidence 33356999999999999999988654444
No 35
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=65.41 E-value=14 Score=36.10 Aligned_cols=35 Identities=11% Similarity=0.224 Sum_probs=24.5
Q ss_pred ceecCCcEEEEEeec--CCCCeEEEeecccCCCCCCC
Q psy145 111 VAVFPGQIVAARGSN--PSRNQFIATKIYSDASLPLS 145 (203)
Q Consensus 111 ~SLFPGQIVavkG~N--~~G~~fvV~eI~~~p~lp~p 145 (203)
=.++||+|||+-|.. -+|+++...+-+..+++|+|
T Consensus 354 ~~a~aGDIv~v~~l~~~~~GDTL~~~~~~~~~~i~~~ 390 (526)
T PRK00741 354 EEAYAGDIIGLHNHGTIQIGDTFTQGEKLKFTGIPNF 390 (526)
T ss_pred ceeCCCCEEEEECCCCCccCCCccCCCccccCCCCCC
Confidence 467999999999864 38899977664444444443
No 36
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=65.33 E-value=3.6 Score=33.91 Aligned_cols=28 Identities=7% Similarity=0.197 Sum_probs=22.6
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++-|.|.+|.+-..+
T Consensus 19 ~~is~~i~~G~~~~l~G~nGsGKSTLl~ 46 (214)
T TIGR02673 19 HDVSLHIRKGEFLFLTGPSGAGKTTLLK 46 (214)
T ss_pred cceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 3356899999999999999998665444
No 37
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=65.25 E-value=3.5 Score=34.92 Aligned_cols=30 Identities=20% Similarity=0.342 Sum_probs=24.2
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-++++-||++|++-|.|.+|.+-..+=|
T Consensus 22 ~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l 51 (252)
T PRK14239 22 NSVSLDFYPNEITALIGPSGSGKSTLLRSI 51 (252)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 336799999999999999999976555544
No 38
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=65.16 E-value=3.5 Score=35.39 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=23.8
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++.||+++++-|.|.+|.+-..+
T Consensus 20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 48 (262)
T PRK09984 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLR 48 (262)
T ss_pred EecceEEEcCCcEEEEECCCCCCHHHHHH
Confidence 34467999999999999999999775554
No 39
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=65.11 E-value=3.6 Score=33.86 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=22.5
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++.|.|.+|++-..+
T Consensus 17 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~ 44 (213)
T cd03301 17 DDLNLDIADGEFVVLLGPSGCGKTTTLR 44 (213)
T ss_pred eceEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 3357899999999999999988655443
No 40
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=65.00 E-value=3.7 Score=33.23 Aligned_cols=26 Identities=23% Similarity=0.307 Sum_probs=21.6
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++.|.|.+|.+-.++
T Consensus 19 i~~~i~~G~~~~i~G~nGsGKSTLl~ 44 (178)
T cd03229 19 VSLNIEAGEIVALLGPSGSGKSTLLR 44 (178)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 56999999999999999988654433
No 41
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=64.96 E-value=3.5 Score=35.24 Aligned_cols=31 Identities=13% Similarity=0.387 Sum_probs=24.3
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
++-++++-||++|++-|.|.+|.+-..+=|.
T Consensus 23 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (258)
T PRK11701 23 RDVSFDLYPGEVLGIVGESGSGKTTLLNALS 53 (258)
T ss_pred eeeeEEEeCCCEEEEECCCCCCHHHHHHHHh
Confidence 3357999999999999999999765555433
No 42
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=64.95 E-value=3.6 Score=33.63 Aligned_cols=29 Identities=17% Similarity=0.266 Sum_probs=23.1
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|.+-+|++-||+++++-|.|.+|++-..+
T Consensus 14 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 42 (206)
T TIGR03608 14 LDDLNLTIEKGKMYAIIGESGSGKSTLLN 42 (206)
T ss_pred EeceEEEEeCCcEEEEECCCCCCHHHHHH
Confidence 33467999999999999999998664444
No 43
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.75 E-value=3.7 Score=34.73 Aligned_cols=26 Identities=12% Similarity=0.176 Sum_probs=22.1
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|.+|++-..+
T Consensus 20 is~~i~~Ge~~~i~G~nGsGKSTLl~ 45 (242)
T cd03295 20 LNLEIAKGEFLVLIGPSGSGKTTTMK 45 (242)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHH
Confidence 56899999999999999999765554
No 44
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=64.72 E-value=3.7 Score=34.53 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=23.0
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
-++++-||+++++.|.|.+|.+-.++=|.
T Consensus 5 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 33 (230)
T TIGR02770 5 LNLSLKRGEVLALVGESGSGKSLTCLAIL 33 (230)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 35889999999999999999775555443
No 45
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=64.60 E-value=3.7 Score=34.92 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=22.3
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++.|.|.+|++-..+
T Consensus 21 ~~~s~~i~~G~~~~i~G~nGsGKSTLl~ 48 (251)
T PRK14249 21 KNINMDFPERQITAIIGPSGCGKSTLLR 48 (251)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 3367899999999999999988654443
No 46
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=64.54 E-value=3.7 Score=34.72 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=23.3
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++.|.|.+|++-..+
T Consensus 15 l~~is~~i~~Ge~~~i~G~nG~GKStLl~ 43 (235)
T cd03299 15 LKNVSLEVERGDYFVILGPTGSGKSVLLE 43 (235)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 45567999999999999999988654444
No 47
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=64.48 E-value=3.8 Score=32.96 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=20.5
Q ss_pred CCCcceecCCcEEEEEeecCCCCeE
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQF 131 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~f 131 (203)
++-++++.||+++++-|.|.+|++-
T Consensus 18 ~~i~l~i~~Ge~~~i~G~nGsGKST 42 (166)
T cd03223 18 KDLSFEIKPGDRLLITGPSGTGKSS 42 (166)
T ss_pred ecCeEEECCCCEEEEECCCCCCHHH
Confidence 3367899999999999999887543
No 48
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=64.41 E-value=3.7 Score=34.77 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.0
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++|+-|.|.+|.+-..+
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 51 (252)
T CHL00131 23 LKGLNLSINKGEIHAIMGPNGSGKSTLSK 51 (252)
T ss_pred eecceeEEcCCcEEEEECCCCCCHHHHHH
Confidence 44467999999999999999999765554
No 49
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=64.40 E-value=3.7 Score=33.75 Aligned_cols=27 Identities=19% Similarity=0.290 Sum_probs=22.2
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-||+++++-|.|..|++-..+
T Consensus 19 ~vs~~i~~G~~~~l~G~nGsGKSTLl~ 45 (211)
T cd03225 19 DISLTIKKGEFVLIVGPNGSGKSTLLR 45 (211)
T ss_pred ceEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 356899999999999999998665544
No 50
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=64.22 E-value=3.8 Score=34.16 Aligned_cols=29 Identities=21% Similarity=0.249 Sum_probs=23.3
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|.+-..+
T Consensus 26 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~ 54 (228)
T PRK10584 26 LTGVELVVKRGETIALIGESGSGKSTLLA 54 (228)
T ss_pred EeccEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 44467999999999999999998664444
No 51
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=64.09 E-value=3.7 Score=34.31 Aligned_cols=31 Identities=26% Similarity=0.360 Sum_probs=24.3
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
|++-++++-||+++|+-|.|.+|.+-..+=|
T Consensus 16 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l 46 (236)
T cd03219 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLI 46 (236)
T ss_pred ecCceEEecCCcEEEEECCCCCCHHHHHHHH
Confidence 3445799999999999999999976555533
No 52
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=64.02 E-value=3.9 Score=33.75 Aligned_cols=27 Identities=26% Similarity=0.445 Sum_probs=21.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEE
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fv 132 (203)
|++-++++-||++|++-|.|.+|.+=.
T Consensus 15 l~~isl~i~~Ge~~~l~G~nGsGKSTL 41 (213)
T cd03235 15 LEDVSFEVKPGEFLAIVGPNGAGKSTL 41 (213)
T ss_pred eecceeEEcCCCEEEEECCCCCCHHHH
Confidence 344568999999999999999885533
No 53
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=63.95 E-value=3.7 Score=35.78 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.8
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++|+-|.|.+|++-..+
T Consensus 21 vsl~i~~Ge~~~i~G~nGsGKSTLl~ 46 (274)
T PRK13644 21 INLVIKKGEYIGIIGKNGSGKSTLAL 46 (274)
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 56899999999999999998764444
No 54
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=63.88 E-value=3.9 Score=33.87 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=22.6
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||++||+-|.|.+|++-..+
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~ 46 (207)
T PRK13539 18 FSGLSFTLAAGEALVLTGPNGSGKTTLLR 46 (207)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33467999999999999999988654433
No 55
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=63.86 E-value=3.9 Score=33.82 Aligned_cols=27 Identities=22% Similarity=0.341 Sum_probs=21.8
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEE
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fv 132 (203)
|++-++++-||+++++.|.|.+|++-.
T Consensus 20 l~~i~~~i~~Ge~~~i~G~nGsGKSTL 46 (221)
T cd03244 20 LKNISFSIKPGEKVGIVGRTGSGKSSL 46 (221)
T ss_pred ccceEEEECCCCEEEEECCCCCCHHHH
Confidence 344579999999999999999885533
No 56
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=63.55 E-value=4 Score=34.39 Aligned_cols=26 Identities=23% Similarity=0.332 Sum_probs=21.0
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEE
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fv 132 (203)
++-++++-||+++|+-|.|.+|++-.
T Consensus 20 ~~~sl~i~~Ge~~~l~G~nGsGKSTL 45 (241)
T PRK10895 20 EDVSLTVNSGEIVGLLGPNGAGKTTT 45 (241)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHH
Confidence 33569999999999999999885533
No 57
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.50 E-value=4 Score=33.90 Aligned_cols=28 Identities=18% Similarity=0.164 Sum_probs=22.5
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++|+-|.|.+|++-..+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 44 (220)
T cd03265 17 RGVSFRVRRGEIFGLLGPNGAGKTTTIK 44 (220)
T ss_pred eceeEEECCCCEEEEECCCCCCHHHHHH
Confidence 3357999999999999999988654444
No 58
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.43 E-value=4.1 Score=34.30 Aligned_cols=29 Identities=10% Similarity=0.182 Sum_probs=23.1
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-+|++-||+++++-|.|.+|+.=..+
T Consensus 16 l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~ 44 (232)
T cd03300 16 LDGVSLDIKEGEFFTLLGPSGCGKTTLLR 44 (232)
T ss_pred eccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 34467999999999999999998664444
No 59
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=63.37 E-value=4 Score=34.25 Aligned_cols=29 Identities=10% Similarity=0.177 Sum_probs=23.5
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++.|.|.+|.+-..+
T Consensus 23 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 51 (225)
T PRK10247 23 LNNISFSLRAGEFKLITGPSGCGKSTLLK 51 (225)
T ss_pred eeccEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 34467999999999999999999765444
No 60
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=63.36 E-value=4.2 Score=34.10 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=21.8
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-+|++-||+++++-|.|.+|++-..+
T Consensus 21 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~ 47 (238)
T cd03249 21 GLSLTIPPGKTVALVGSSGCGKSTVVS 47 (238)
T ss_pred ceEEEecCCCEEEEEeCCCCCHHHHHH
Confidence 356889999999999999998654444
No 61
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=63.25 E-value=3.9 Score=34.96 Aligned_cols=32 Identities=9% Similarity=0.211 Sum_probs=24.8
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
|++-++++-||++|++-|.|.+|++-..+=|.
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~la 51 (258)
T PRK14241 20 VEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLN 51 (258)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 33456999999999999999999766555443
No 62
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=63.19 E-value=4.1 Score=34.54 Aligned_cols=31 Identities=10% Similarity=0.119 Sum_probs=24.8
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
.+-++++-||+++++-|.|.+|++-..+=|.
T Consensus 20 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 50 (250)
T PRK14240 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLN 50 (250)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 3357999999999999999999776655443
No 63
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=63.14 E-value=4.1 Score=33.95 Aligned_cols=29 Identities=14% Similarity=0.186 Sum_probs=23.6
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
-++++-||+++++-|.|.+|++-..+=|.
T Consensus 19 vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~ 47 (227)
T cd03260 19 ISLDIPKGEITALIGPSGCGKSTLLRLLN 47 (227)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 56899999999999999999766555443
No 64
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=63.10 E-value=4.1 Score=34.08 Aligned_cols=29 Identities=21% Similarity=0.405 Sum_probs=23.0
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|++-..+
T Consensus 17 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 45 (241)
T cd03256 17 LKDVSLSINPGEFVALIGPSGAGKSTLLR 45 (241)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33356999999999999999998764444
No 65
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=63.00 E-value=4.2 Score=32.82 Aligned_cols=26 Identities=15% Similarity=0.192 Sum_probs=21.2
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|..|++-..+
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKStLl~ 46 (178)
T cd03247 21 LSLELKQGEKIALLGRSGSGKSTLLQ 46 (178)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 46899999999999999988654433
No 66
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=62.93 E-value=4.3 Score=33.83 Aligned_cols=26 Identities=15% Similarity=0.193 Sum_probs=21.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeE
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQF 131 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~f 131 (203)
|.+-++++-+|++|++-|.|.+|.+-
T Consensus 27 l~~vs~~i~~Ge~~~i~G~nGsGKST 52 (214)
T PRK13543 27 FGPLDFHVDAGEALLVQGDNGAGKTT 52 (214)
T ss_pred eecceEEECCCCEEEEEcCCCCCHHH
Confidence 34467999999999999999988553
No 67
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=62.45 E-value=4.1 Score=33.65 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=22.8
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++|+-|.|.+|++-..+
T Consensus 17 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 44 (222)
T cd03224 17 FGVSLTVPEGEIVALLGRNGAGKTTLLK 44 (222)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHH
Confidence 3356899999999999999999765554
No 68
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=62.41 E-value=4.3 Score=33.54 Aligned_cols=26 Identities=12% Similarity=0.155 Sum_probs=21.7
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|.+|++=..+
T Consensus 22 isl~i~~Ge~~~i~G~nGsGKSTLl~ 47 (216)
T TIGR00960 22 LNFHITKGEMVFLVGHSGAGKSTFLK 47 (216)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 56899999999999999998664444
No 69
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=62.16 E-value=4.4 Score=34.04 Aligned_cols=26 Identities=23% Similarity=0.282 Sum_probs=21.6
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|.+|++=..+
T Consensus 19 vs~~i~~Ge~~~l~G~nGsGKSTLl~ 44 (235)
T cd03261 19 VDLDVRRGEILAIIGPSGSGKSTLLR 44 (235)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 56899999999999999988664444
No 70
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=62.13 E-value=4.4 Score=34.15 Aligned_cols=23 Identities=17% Similarity=0.255 Sum_probs=19.8
Q ss_pred CCcceecCCcEEEEEeecCCCCe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~ 130 (203)
+-+|++-||+++++-|.|.+|.+
T Consensus 40 ~vs~~i~~Ge~~~i~G~nGsGKS 62 (224)
T cd03220 40 DVSFEVPRGERIGLIGRNGAGKS 62 (224)
T ss_pred eeEEEEcCCCEEEEECCCCCCHH
Confidence 35699999999999999998854
No 71
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=62.07 E-value=4.4 Score=34.14 Aligned_cols=28 Identities=25% Similarity=0.375 Sum_probs=22.8
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++++-||+++++-|.|.+|++-..+=|
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~l 47 (236)
T TIGR03864 20 VSFTVRPGEFVALLGPNGAGKSTLFSLL 47 (236)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 5688999999999999999976555433
No 72
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=62.03 E-value=4.4 Score=34.90 Aligned_cols=29 Identities=24% Similarity=0.446 Sum_probs=23.1
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++.||+++++-|.|.+|.+-..+
T Consensus 18 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~ 46 (258)
T PRK13548 18 LDDVSLTLRPGEVVAILGPNGAGKSTLLR 46 (258)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33457999999999999999998764444
No 73
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=61.97 E-value=4.5 Score=33.15 Aligned_cols=28 Identities=11% Similarity=0.156 Sum_probs=22.7
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++.||+++++-|.|.+|.+-..+
T Consensus 17 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~ 44 (198)
T TIGR01189 17 EGLSFTLNAGEALQVTGPNGIGKTTLLR 44 (198)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHHH
Confidence 3357899999999999999999764444
No 74
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=61.91 E-value=4.5 Score=34.15 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=23.6
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-++++-||+++++-|.|.+|++-..+=|
T Consensus 19 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l 48 (239)
T cd03296 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLI 48 (239)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 335799999999999999999876554433
No 75
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=61.91 E-value=4.5 Score=33.20 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=23.1
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|.+-++++-||+++++-|.|.+|.+-..+
T Consensus 16 l~~~s~~i~~G~~~~l~G~nGsGKSTLl~ 44 (213)
T cd03262 16 LKGIDLTVKKGEVVVIIGPSGSGKSTLLR 44 (213)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHHHHH
Confidence 34467899999999999999998764444
No 76
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=61.90 E-value=4.4 Score=33.78 Aligned_cols=28 Identities=21% Similarity=0.209 Sum_probs=22.4
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-+|++-||+++++-|.|.+|++-..+
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~ 44 (232)
T cd03218 17 NGVSLSVKQGEIVGLLGPNGAGKTTTFY 44 (232)
T ss_pred ccceeEecCCcEEEEECCCCCCHHHHHH
Confidence 3456999999999999999988654444
No 77
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=61.85 E-value=4.5 Score=34.45 Aligned_cols=30 Identities=10% Similarity=0.192 Sum_probs=24.0
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-++++-||+++++-|.|.+|.+-..+=|
T Consensus 24 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l 53 (254)
T PRK14273 24 NNINIKILKNSITALIGPSGCGKSTFLRTL 53 (254)
T ss_pred cceeeEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 346799999999999999999976555533
No 78
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=61.80 E-value=4.4 Score=34.28 Aligned_cols=29 Identities=24% Similarity=0.303 Sum_probs=23.1
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
+-++++-||+++++-|.|.+|.+-..+=|
T Consensus 18 ~is~~i~~Ge~~~l~G~nGsGKSTLl~~i 46 (237)
T TIGR00968 18 DVNLEVPTGSLVALLGPSGSGKSTLLRII 46 (237)
T ss_pred eEEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 35689999999999999999866555433
No 79
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=61.72 E-value=4.5 Score=34.11 Aligned_cols=27 Identities=7% Similarity=0.134 Sum_probs=22.1
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-||++|++.|.|.+|.+-..+
T Consensus 20 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~ 46 (242)
T PRK11124 20 DITLDCPQGETLVLLGPSGAGKSSLLR 46 (242)
T ss_pred eeeeEEcCCCEEEEECCCCCCHHHHHH
Confidence 356899999999999999998664444
No 80
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=61.68 E-value=4.5 Score=33.99 Aligned_cols=26 Identities=19% Similarity=0.193 Sum_probs=21.2
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++.|.|.+|..-..+
T Consensus 18 is~~i~~Ge~~~l~G~nGsGKSTLl~ 43 (232)
T PRK10771 18 FDLTVERGERVAILGPSGAGKSTLLN 43 (232)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 35889999999999999988664444
No 81
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=61.65 E-value=5 Score=33.65 Aligned_cols=33 Identities=27% Similarity=0.311 Sum_probs=25.5
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeeccc
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIYS 138 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~~ 138 (203)
|++-++++-||+++++-|.|.+|.+-..+=|..
T Consensus 16 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G 48 (243)
T TIGR01978 16 LKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAG 48 (243)
T ss_pred EeccceEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344579999999999999999997755554433
No 82
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=61.38 E-value=4.4 Score=35.35 Aligned_cols=26 Identities=15% Similarity=0.167 Sum_probs=21.4
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||++||+-|.|.+|.+-..+
T Consensus 24 isl~i~~Ge~~~i~G~nGsGKSTLl~ 49 (274)
T PRK13647 24 LSLSIPEGSKTALLGPNGAGKSTLLL 49 (274)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHH
Confidence 56999999999999999988654444
No 83
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=61.38 E-value=4.5 Score=35.28 Aligned_cols=26 Identities=12% Similarity=0.057 Sum_probs=21.4
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||++|++-|.|.+|++-..+
T Consensus 23 vsl~i~~Ge~~~i~G~NGsGKSTLl~ 48 (277)
T PRK13652 23 INFIAPRNSRIAVIGPNGAGKSTLFR 48 (277)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 56899999999999999988654433
No 84
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=61.18 E-value=4.6 Score=34.62 Aligned_cols=32 Identities=9% Similarity=0.107 Sum_probs=25.0
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
|++-+|++-||++||+-|.|.+|++-..+=|.
T Consensus 28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~ 59 (258)
T PRK14268 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLN 59 (258)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33456999999999999999999776555443
No 85
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=61.10 E-value=4.7 Score=33.33 Aligned_cols=28 Identities=18% Similarity=0.196 Sum_probs=22.0
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++-|.|.+|.+-..+
T Consensus 21 ~~i~~~i~~G~~~~i~G~nGsGKSTLl~ 48 (220)
T cd03245 21 DNVSLTIRAGEKVAIIGRVGSGKSTLLK 48 (220)
T ss_pred cceEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 3356889999999999999988554443
No 86
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=60.92 E-value=4.7 Score=33.90 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=22.4
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||++|++-|.|.+|.+-..+
T Consensus 26 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~ 53 (233)
T PRK11629 26 HNVSFSIGEGEMMAIVGSSGSGKSTLLH 53 (233)
T ss_pred EeeEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 3356899999999999999998654444
No 87
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=60.87 E-value=4.8 Score=34.10 Aligned_cols=31 Identities=16% Similarity=0.189 Sum_probs=24.5
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
|++-++++-||+++++-|.|.+|.+-..+=|
T Consensus 20 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i 50 (252)
T PRK14272 20 VKNVNLDVQRGTVNALIGPSGCGKTTFLRAI 50 (252)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 4446799999999999999999976555433
No 88
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=60.61 E-value=4.7 Score=34.81 Aligned_cols=23 Identities=22% Similarity=0.400 Sum_probs=19.7
Q ss_pred CcceecCCcEEEEEeecCCCCeE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQF 131 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~f 131 (203)
-++++.||+++++-|.|.+|++-
T Consensus 23 vs~~i~~Ge~~~I~G~NGsGKST 45 (251)
T PRK09544 23 VSLELKPGKILTLLGPNGAGKST 45 (251)
T ss_pred EEEEEcCCcEEEEECCCCCCHHH
Confidence 56999999999999999988543
No 89
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.51 E-value=5 Score=32.23 Aligned_cols=25 Identities=28% Similarity=0.454 Sum_probs=20.8
Q ss_pred cCCCcceecCCcEEEEEeecCCCCe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~ 130 (203)
|++-++++-||+++++.|.|.+|++
T Consensus 18 l~~i~~~i~~G~~~~l~G~nGsGKs 42 (171)
T cd03228 18 LKDVSLTIKPGEKVAIVGPSGSGKS 42 (171)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHH
Confidence 3345699999999999999998854
No 90
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=60.46 E-value=5 Score=31.65 Aligned_cols=26 Identities=15% Similarity=0.316 Sum_probs=21.7
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++.+-||+++++-|.|.+|..-..+
T Consensus 19 ~~~~~~~Ge~~~i~G~nGsGKStLl~ 44 (144)
T cd03221 19 ISLTINPGDRIGLVGRNGAGKSTLLK 44 (144)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHH
Confidence 56889999999999999999764444
No 91
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=60.42 E-value=4.9 Score=33.25 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=21.8
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-||+++++-|.|.+|.+-..+
T Consensus 23 ~isl~i~~G~~~~i~G~nGsGKSTLl~ 49 (221)
T TIGR02211 23 GVSLSIGKGEIVAIVGSSGSGKSTLLH 49 (221)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 356899999999999999988654444
No 92
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=60.37 E-value=4.9 Score=33.61 Aligned_cols=27 Identities=22% Similarity=0.265 Sum_probs=21.9
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-||+++++.|.|.+|++=..+
T Consensus 19 ~i~~~i~~Ge~~~l~G~nGsGKSTLl~ 45 (236)
T cd03253 19 DVSFTIPAGKKVAIVGPSGSGKSTILR 45 (236)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 357899999999999999998654444
No 93
>cd04479 RPA3 RPA3: A subfamily of OB folds similar to human RPA3 (also called RPA14). RPA3 is the smallest subunit of Replication protein A (RPA). RPA is a nuclear ssDNA binding protein (SSB) which appears to be involved in all aspects of DNA metabolism including replication, recombination, and repair. RPA also mediates specific interactions of various nuclear proteins. In animals, plants, and fungi, RPA is a heterotrimer with subunits of 70KDa (RPA1), 32kDa (RPA2), and 14 KDa (RPA3). RPA3 is believed to have a structural role in assembly of the RPA heterotrimer.
Probab=60.28 E-value=73 Score=24.15 Aligned_cols=62 Identities=11% Similarity=0.115 Sum_probs=44.8
Q ss_pred ccEEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEeecCCCcceecCCcEEEEEeecCCCCeEEEeeccc
Q psy145 66 TEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGSNPSRNQFIATKIYS 138 (203)
Q Consensus 66 ~~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ldls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~~ 138 (203)
..|.++||+..-. +.++.+.++ .|..|.+.|..+. .+.+|+.|=+.|+=..+..+.+.....
T Consensus 16 k~V~ivGkV~~~~------~~~~~~~~~----Dg~~v~v~l~~~~-~~~~~~~vEViG~V~~~~~I~~~~~~~ 77 (101)
T cd04479 16 KTVRIVGKVEKVD------GDSLTLISS----DGVNVTVELNRPL-DLPISGYVEVIGKVSPDLTIRVLSYID 77 (101)
T ss_pred CEEEEEEEEEEec------CCeEEEEcC----CCCEEEEEeCCCC-CcccCCEEEEEEEECCCCeEEEEEEEE
Confidence 5899999998643 235666654 3577888877733 789999999999966666777766544
No 94
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=59.56 E-value=5.1 Score=34.03 Aligned_cols=32 Identities=13% Similarity=0.113 Sum_probs=25.3
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
|++-++++-||+++++-|.|.+|++-..+=|.
T Consensus 22 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~ 53 (253)
T PRK14242 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLN 53 (253)
T ss_pred ecceeEEEeCCCEEEEECCCCCCHHHHHHHHH
Confidence 33467999999999999999999776555443
No 95
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=59.47 E-value=5.2 Score=33.23 Aligned_cols=29 Identities=21% Similarity=0.303 Sum_probs=23.0
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|.+-++++-||+++++-|.|.+|.+-..+
T Consensus 24 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~ 52 (224)
T TIGR02324 24 LKNVSLTVNAGECVALSGPSGAGKSTLLK 52 (224)
T ss_pred EecceEEECCCCEEEEECCCCCCHHHHHH
Confidence 33456999999999999999988655444
No 96
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=59.44 E-value=1.5e+02 Score=29.57 Aligned_cols=25 Identities=20% Similarity=0.098 Sum_probs=17.7
Q ss_pred cceecCCcEEEEEeec--CCCCeEEEe
Q psy145 110 GVAVFPGQIVAARGSN--PSRNQFIAT 134 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N--~~G~~fvV~ 134 (203)
-=...+|+||++-|.. ..|+.+.-.
T Consensus 261 v~~a~aGDiv~i~gl~~i~~Gdtl~~~ 287 (594)
T TIGR01394 261 IDEAGAGDIVAVAGLEDINIGETIADP 287 (594)
T ss_pred CCEECCCCEEEEeCCcccCCCCEEeCC
Confidence 3458899999998863 267776433
No 97
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=59.42 E-value=5.1 Score=34.65 Aligned_cols=32 Identities=9% Similarity=0.059 Sum_probs=25.1
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
|++-++++-||+++++-|.|.+|.+-..+=|.
T Consensus 35 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 66 (267)
T PRK14235 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLN 66 (267)
T ss_pred EEEEEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 33456899999999999999999776665443
No 98
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=59.41 E-value=5.2 Score=33.92 Aligned_cols=27 Identities=7% Similarity=0.030 Sum_probs=22.4
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-||+++++-|.|.+|++-..+
T Consensus 22 ~~sl~i~~Ge~~~i~G~nGsGKSTLl~ 48 (251)
T PRK14251 22 GISLDFEEKELTALIGPSGCGKSTFLR 48 (251)
T ss_pred eeeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 356899999999999999999765444
No 99
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=59.22 E-value=5.2 Score=33.87 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=24.6
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
|.+-++++-||+++++-|.|.+|++-..+=|
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l 49 (249)
T PRK14253 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCL 49 (249)
T ss_pred eecceEEecCCCEEEEECCCCCCHHHHHHHH
Confidence 3446799999999999999999977555543
No 100
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=59.19 E-value=13 Score=32.29 Aligned_cols=55 Identities=15% Similarity=0.160 Sum_probs=35.3
Q ss_pred CCCCcceeEEEeeccC-CCceEEEeecCCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 81 GKLNAASVLLEGDEVT-SGGRSISLKLPETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 81 gkLn~~Sv~LEgsr~~-g~G~rV~Ldls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
..+|+...+|+-..-. ..+.+. -|++-++++-||+++++-|.|.+|++-..+=|.
T Consensus 12 ~~~~~~~~~l~~~nl~~~~~~~~--~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~ 67 (274)
T PRK14265 12 ATINPDHSVFEVEGVKVFYGGFL--ALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFN 67 (274)
T ss_pred cccCCCCceEEEeeEEEEeCCeE--EEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 4677777777643110 111111 234467899999999999999999776665443
No 101
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=59.13 E-value=5.3 Score=32.13 Aligned_cols=29 Identities=21% Similarity=0.294 Sum_probs=22.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++.|.|.+|+.-..+
T Consensus 16 l~~~~~~i~~Ge~~~i~G~nGsGKStLl~ 44 (173)
T cd03230 16 LDDISLTVEKGEIYGLLGPNGAGKTTLIK 44 (173)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 33467999999999999999988654333
No 102
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=59.05 E-value=5.3 Score=33.03 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=22.7
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++|+-|.|.+|++-..+
T Consensus 19 ~~is~~i~~Ge~~~i~G~nGsGKSTLl~ 46 (220)
T cd03263 19 DDLSLNVYKGEIFGLLGHNGAGKTTTLK 46 (220)
T ss_pred cceEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 3357899999999999999988765444
No 103
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=59.03 E-value=5.2 Score=34.84 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=21.9
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||++|++.|.|.+|++-..+
T Consensus 21 vsl~i~~Ge~~~l~G~nGsGKSTLl~ 46 (275)
T PRK13639 21 INFKAEKGEMVALLGPNGAGKSTLFL 46 (275)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 56899999999999999999765544
No 104
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=59.01 E-value=5.3 Score=34.31 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=20.2
Q ss_pred CcceecCCcEEEEEeecCCCCeEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fv 132 (203)
-++++.||+++++-|.|.+|..-.
T Consensus 40 isl~i~~Ge~~~i~G~nGsGKSTL 63 (257)
T cd03288 40 VKAYIKPGQKVGICGRTGSGKSSL 63 (257)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHH
Confidence 468999999999999999885533
No 105
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=58.96 E-value=5.3 Score=34.16 Aligned_cols=31 Identities=13% Similarity=0.249 Sum_probs=24.1
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
|++-++.+-||+++++-|.|.+|.+-.++=|
T Consensus 19 l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l 49 (254)
T PRK10418 19 VHGVSLTLQRGRVLALVGGSGSGKSLTCAAA 49 (254)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 4445699999999999999999876554433
No 106
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=58.88 E-value=5.2 Score=34.70 Aligned_cols=28 Identities=18% Similarity=0.152 Sum_probs=22.4
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++-|.|.+|++-..+
T Consensus 24 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~ 51 (280)
T PRK13649 24 FDVNLTIEDGSYTAFIGHTGSGKSTIMQ 51 (280)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 3356999999999999999999664443
No 107
>PRK10908 cell division protein FtsE; Provisional
Probab=58.86 E-value=5.4 Score=33.17 Aligned_cols=28 Identities=11% Similarity=0.201 Sum_probs=22.1
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++-|.|.+|++-..+
T Consensus 19 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~ 46 (222)
T PRK10908 19 QGVTFHMRPGEMAFLTGHSGAGKSTLLK 46 (222)
T ss_pred eeeeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 3356899999999999999988654443
No 108
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=58.49 E-value=5.7 Score=31.98 Aligned_cols=25 Identities=24% Similarity=0.367 Sum_probs=20.4
Q ss_pred CcceecCCcEEEEEeecCCCCeEEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
-++++.||+++++.|.|.+|++-..
T Consensus 21 ~~~~i~~Ge~~~i~G~nGsGKStLl 45 (173)
T cd03246 21 VSFSIEPGESLAIIGPSGSGKSTLA 45 (173)
T ss_pred eEEEECCCCEEEEECCCCCCHHHHH
Confidence 4689999999999999998854333
No 109
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=58.36 E-value=5.6 Score=33.39 Aligned_cols=29 Identities=21% Similarity=0.366 Sum_probs=22.9
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|++-..+
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~ 46 (243)
T TIGR02315 18 LKNINLNINPGEFVAIIGPSGAGKSTLLR 46 (243)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33467999999999999999988654443
No 110
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=58.34 E-value=5.6 Score=34.29 Aligned_cols=29 Identities=17% Similarity=0.219 Sum_probs=23.2
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||++|++-|.|.+|++-..+
T Consensus 27 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 55 (265)
T PRK10575 27 LHPLSLTFPAGKVTGLIGHNGSGKSTLLK 55 (265)
T ss_pred EeeeeeEEcCCCEEEEECCCCCCHHHHHH
Confidence 44467999999999999999998655444
No 111
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=58.31 E-value=5.6 Score=33.36 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=21.9
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-||+++++-|.|.+|++-..+
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~ 46 (237)
T cd03252 20 NISLRIKPGEVVGIVGRSGSGKSTLTK 46 (237)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 356899999999999999999654444
No 112
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=58.20 E-value=5.7 Score=32.66 Aligned_cols=29 Identities=14% Similarity=0.194 Sum_probs=22.8
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++.+-||++|++-|.|.+|+.-..+
T Consensus 24 l~~isl~i~~G~~~~i~G~nGsGKSTLl~ 52 (207)
T cd03369 24 LKNVSFKVKAGEKIGIVGRTGAGKSTLIL 52 (207)
T ss_pred ccCceEEECCCCEEEEECCCCCCHHHHHH
Confidence 44466899999999999999988654443
No 113
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=58.16 E-value=5.7 Score=33.16 Aligned_cols=26 Identities=19% Similarity=0.270 Sum_probs=21.5
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|.+|++-..+
T Consensus 21 i~~~i~~Ge~~~i~G~nGsGKSTLl~ 46 (234)
T cd03251 21 ISLDIPAGETVALVGPSGSGKSTLVN 46 (234)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 56899999999999999988654444
No 114
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=58.14 E-value=5.8 Score=32.77 Aligned_cols=30 Identities=17% Similarity=0.245 Sum_probs=23.5
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-++++-||+++++-|.|.+|++-..+=|
T Consensus 21 ~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i 50 (218)
T cd03255 21 KGVSLSIEKGEFVAIVGPSGSGKSTLLNIL 50 (218)
T ss_pred eeeEEEEcCCCEEEEEcCCCCCHHHHHHHH
Confidence 335689999999999999999976544433
No 115
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=57.79 E-value=5.8 Score=33.65 Aligned_cols=29 Identities=17% Similarity=0.208 Sum_probs=23.2
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|.+-..+
T Consensus 19 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~ 47 (241)
T PRK14250 19 LKDISVKFEGGAIYTIVGPSGAGKSTLIK 47 (241)
T ss_pred eeeeeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33456899999999999999999765444
No 116
>PF01973 MAF_flag10: Protein of unknown function DUF115; InterPro: IPR002826 The prokaryotic proteins in this family have no known function.
Probab=57.75 E-value=15 Score=29.57 Aligned_cols=32 Identities=16% Similarity=0.112 Sum_probs=26.8
Q ss_pred cceEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 159 KLRVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 159 ~l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
.-=+++++||-|.+-++.+++.+-+.+|+..-
T Consensus 25 ~~~~IvgaGPSL~~~i~~lk~~~~~~~iia~~ 56 (170)
T PF01973_consen 25 KPAIIVGAGPSLDKNIELLKENRNKAIIIAVN 56 (170)
T ss_pred CeEEEEecCCCHHHHHHHHHhcccCcEEEEec
Confidence 34588999999999999999999888887654
No 117
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=57.73 E-value=5.8 Score=33.63 Aligned_cols=29 Identities=10% Similarity=0.167 Sum_probs=23.9
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
+-++++-||+++++-|.|.+|.+-..+-|
T Consensus 19 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l 47 (247)
T TIGR00972 19 NINLDIPKNQVTALIGPSGCGKSTLLRSL 47 (247)
T ss_pred ceeEEECCCCEEEEECCCCCCHHHHHHHH
Confidence 35689999999999999999977666544
No 118
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=57.70 E-value=5.7 Score=33.41 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=24.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
|++-++++-||+++++-|.|.+|++-..+=|
T Consensus 18 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l 48 (242)
T TIGR03411 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVI 48 (242)
T ss_pred eeeeeEEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 4446799999999999999999976554433
No 119
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=57.70 E-value=5.7 Score=34.75 Aligned_cols=27 Identities=19% Similarity=0.405 Sum_probs=21.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEE
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fv 132 (203)
|++-++++-||+++|+-|.|.+|.+-.
T Consensus 40 l~~is~~i~~Ge~~~liG~NGsGKSTL 66 (264)
T PRK13546 40 LDDISLKAYEGDVIGLVGINGSGKSTL 66 (264)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHH
Confidence 334578999999999999999885433
No 120
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=57.60 E-value=5.7 Score=33.78 Aligned_cols=30 Identities=7% Similarity=0.096 Sum_probs=23.9
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-++++-||+++++-|.|.+|++-..+=|
T Consensus 23 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l 52 (253)
T PRK14261 23 YDITISIPKNRVTALIGPSGCGKSTLLRCF 52 (253)
T ss_pred eeeEEEECCCcEEEEECCCCCCHHHHHHHH
Confidence 335689999999999999999976555544
No 121
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=57.49 E-value=5.8 Score=34.43 Aligned_cols=26 Identities=27% Similarity=0.268 Sum_probs=21.0
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEE
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
+-++++-||++||+-|.|.+|.+-..
T Consensus 25 ~vsl~i~~Ge~~~l~G~nGsGKSTLl 50 (272)
T PRK15056 25 DASFTVPGGSIAALVGVNGSGKSTLF 50 (272)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHH
Confidence 35689999999999999998865433
No 122
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=57.38 E-value=5.9 Score=33.65 Aligned_cols=31 Identities=10% Similarity=0.201 Sum_probs=24.3
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
.+-++++-||+++++-|.|.+|.+-..+=|.
T Consensus 21 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 51 (251)
T PRK14270 21 NDINLPIYENKITALIGPSGCGKSTFLRCLN 51 (251)
T ss_pred eceeEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 3356899999999999999999765555443
No 123
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=57.25 E-value=5.9 Score=32.91 Aligned_cols=28 Identities=18% Similarity=0.256 Sum_probs=22.1
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++-|.|.+|.+=..+
T Consensus 21 ~~vs~~i~~G~~~~i~G~nGsGKSTLl~ 48 (220)
T cd03293 21 EDISLSVEEGEFVALVGPSGCGKSTLLR 48 (220)
T ss_pred eceeEEEeCCcEEEEECCCCCCHHHHHH
Confidence 3356899999999999999988654443
No 124
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=57.24 E-value=6.3 Score=32.54 Aligned_cols=31 Identities=26% Similarity=0.347 Sum_probs=24.0
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
|++-++++=||++|++.|.|.+|+.-..+=|
T Consensus 16 l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l 46 (200)
T cd03217 16 LKGVNLTIKKGEVHALMGPNGSGKSTLAKTI 46 (200)
T ss_pred eeccceEECCCcEEEEECCCCCCHHHHHHHH
Confidence 3346799999999999999999876544433
No 125
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=57.23 E-value=25 Score=34.28 Aligned_cols=68 Identities=16% Similarity=0.260 Sum_probs=37.9
Q ss_pred EEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEee----cCC----CcceecCCcEEEEEeec--CCCCeEEEeeccc
Q psy145 69 TAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLK----LPE----TGVAVFPGQIVAARGSN--PSRNQFIATKIYS 138 (203)
Q Consensus 69 ~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ld----ls~----~~~SLFPGQIVavkG~N--~~G~~fvV~eI~~ 138 (203)
+++.|||+ |+|...+-+.-. ..|+..++. +-. .-=.++||+|||+-|.. .+|+++...+-+.
T Consensus 313 iaf~RV~s----G~l~~g~~v~~~----~~~k~~ri~~~~~~~g~~~~~v~~a~aGDI~~~~~~~~~~~GDtl~~~~~~~ 384 (527)
T TIGR00503 313 VAFMRVVS----GKYEKGMKLKHV----RTGKDVVISDALTFMAGDREHVEEAYAGDIIGLHNHGTIQIGDTFTQGEKIK 384 (527)
T ss_pred EEEEEEee----eEEcCCCEEEec----CCCCcEEecchhhhhcCCceEcceeCCCCEEEEECCCCcccCCEecCCCcee
Confidence 46666664 566655544321 124444432 111 33568999999999854 3788886555333
Q ss_pred CCCCCC
Q psy145 139 DASLPL 144 (203)
Q Consensus 139 ~p~lp~ 144 (203)
.++.|+
T Consensus 385 ~~~i~~ 390 (527)
T TIGR00503 385 FTGIPN 390 (527)
T ss_pred ecCCCC
Confidence 333333
No 126
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=57.23 E-value=5.8 Score=34.40 Aligned_cols=32 Identities=9% Similarity=0.131 Sum_probs=25.0
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
|++-++++-||+++++-|.|.+|.+-..+=|.
T Consensus 29 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~ 60 (269)
T PRK14259 29 VKNVFCDIPRGKVTALIGPSGCGKSTVLRSLN 60 (269)
T ss_pred EcceEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 34467999999999999999999765555443
No 127
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=57.12 E-value=6 Score=33.07 Aligned_cols=29 Identities=17% Similarity=0.283 Sum_probs=23.3
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|++-..+
T Consensus 21 l~~~s~~i~~Ge~~~l~G~nGsGKSTLl~ 49 (233)
T cd03258 21 LKDVSLSVPKGEIFGIIGRSGAGKSTLIR 49 (233)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33456999999999999999999765544
No 128
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=57.11 E-value=5.9 Score=34.14 Aligned_cols=29 Identities=10% Similarity=0.124 Sum_probs=23.6
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
+-++++-||+++++-|.|.+|++-..+=|
T Consensus 39 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l 67 (268)
T PRK14248 39 DISMDIEKHAVTALIGPSGCGKSTFLRSI 67 (268)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 35689999999999999999976655544
No 129
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.97 E-value=6 Score=34.06 Aligned_cols=30 Identities=13% Similarity=0.105 Sum_probs=23.7
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
.+-++++-||++|++-|.|.+|++-..+=|
T Consensus 33 ~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l 62 (265)
T PRK14252 33 KNINMMVHEKQVTALIGPSGCGKSTFLRCF 62 (265)
T ss_pred eeeEEEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 336799999999999999999976554433
No 130
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=56.95 E-value=5.8 Score=33.63 Aligned_cols=29 Identities=17% Similarity=0.214 Sum_probs=23.6
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|++-..+
T Consensus 21 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~ 49 (255)
T PRK11300 21 VNNVNLEVREQEIVSLIGPNGAGKTTVFN 49 (255)
T ss_pred EEeeeeEEcCCeEEEEECCCCCCHHHHHH
Confidence 34457999999999999999999765555
No 131
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=56.69 E-value=6.1 Score=33.47 Aligned_cols=31 Identities=10% Similarity=0.158 Sum_probs=24.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
|++-++++-||+++++-|.|.+|++-..+=|
T Consensus 19 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l 49 (250)
T PRK14266 19 LKNVNLDIPKNSVTALIGPSGCGKSTFIRTL 49 (250)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 3345799999999999999999976555444
No 132
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=56.66 E-value=6.1 Score=34.05 Aligned_cols=26 Identities=8% Similarity=0.226 Sum_probs=21.0
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|.+|++-..+
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~ 45 (255)
T PRK11248 20 INLTLESGELLVVLGPSGCGKTTLLN 45 (255)
T ss_pred eeEEECCCCEEEEECCCCCCHHHHHH
Confidence 56899999999999999888654333
No 133
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=55.49 E-value=6.8 Score=33.78 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=22.9
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|.+-..+
T Consensus 23 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~ 51 (265)
T PRK10253 23 AENLTVEIPDGHFTAIIGPNGCGKSTLLR 51 (265)
T ss_pred eeecceEECCCCEEEEECCCCCCHHHHHH
Confidence 34467999999999999999988654444
No 134
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=55.45 E-value=6.4 Score=34.52 Aligned_cols=29 Identities=17% Similarity=0.203 Sum_probs=22.8
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
+-++++-||++||+-|.|.+|.+-..+=|
T Consensus 25 ~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L 53 (286)
T PRK13646 25 DVNTEFEQGKYYAIVGQTGSGKSTLIQNI 53 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 35689999999999999999865544433
No 135
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=55.33 E-value=6.8 Score=32.63 Aligned_cols=29 Identities=28% Similarity=0.413 Sum_probs=23.1
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-+|++-+|++|++-|.|.+|..-..+
T Consensus 21 l~~vs~~i~~G~~~~I~G~nGsGKStLl~ 49 (220)
T TIGR02982 21 LFDINLEINPGEIVILTGPSGSGKTTLLT 49 (220)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 34457999999999999999998764444
No 136
>PRK10218 GTP-binding protein; Provisional
Probab=55.25 E-value=1.9e+02 Score=28.95 Aligned_cols=61 Identities=21% Similarity=0.205 Sum_probs=33.4
Q ss_pred EEEEEEeeCCCCCCCCcceeEEEeeccCCC--ceEE-Ee-ecC---C-CcceecCCcEEEEEeecC--CCCeEEEe
Q psy145 69 TAIGRIVCDTSDGKLNAASVLLEGDEVTSG--GRSI-SL-KLP---E-TGVAVFPGQIVAARGSNP--SRNQFIAT 134 (203)
Q Consensus 69 ~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~--G~rV-~L-dls---~-~~~SLFPGQIVavkG~N~--~G~~fvV~ 134 (203)
+++|||.+ |.|....-+.=... .+. -.+| +| .+. . .-=.+.+|+|||+-|... +|+++.-.
T Consensus 221 i~~gRV~s----G~lk~Gd~v~~~~~-~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GdTl~~~ 291 (607)
T PRK10218 221 IGIGRIKR----GKVKPNQQVTIIDS-EGKTRNAKVGKVLGHLGLERIETDLAEAGDIVAITGLGELNISDTVCDT 291 (607)
T ss_pred EEEEEEEe----CcCcCCCEEEEecC-CCcEeeEEEEEEEEEecCCceECCEEcCCCEEEEECccccccCcEEecC
Confidence 57778774 55665554432221 111 1223 33 121 1 334689999999988642 67887533
No 137
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=55.19 E-value=6.8 Score=33.77 Aligned_cols=29 Identities=17% Similarity=0.275 Sum_probs=23.1
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||++||+-|.|.+|++-..+
T Consensus 27 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~ 55 (265)
T TIGR02769 27 LTNVSLSIEEGETVGLLGRSGCGKSTLAR 55 (265)
T ss_pred eeCceeEEcCCCEEEEECCCCCCHHHHHH
Confidence 44456999999999999999998664444
No 138
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=55.11 E-value=6.8 Score=33.32 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=21.5
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|.+|.+-..+
T Consensus 19 vs~~i~~Ge~~~i~G~nGsGKSTLl~ 44 (252)
T TIGR03005 19 LNFSVAAGEKVALIGPSGSGKSTILR 44 (252)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 56889999999999999988664443
No 139
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=54.98 E-value=6.5 Score=34.48 Aligned_cols=30 Identities=17% Similarity=0.190 Sum_probs=23.6
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-++++-||+++++-|.|..|++-..+=|
T Consensus 24 ~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l 53 (287)
T PRK13641 24 DNISFELEEGSFVALVGHTGSGKSTLMQHF 53 (287)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHH
Confidence 335689999999999999999976554433
No 140
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=54.97 E-value=7 Score=32.68 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=22.8
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++-|.|.+|+.-.++
T Consensus 24 ~~vsl~i~~Ge~~~l~G~nGsGKSTLlk 51 (226)
T cd03234 24 NDVSLHVESGQVMAILGSSGSGKTTLLD 51 (226)
T ss_pred cCceEEEcCCeEEEEECCCCCCHHHHHH
Confidence 3357899999999999999999764444
No 141
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=54.97 E-value=6.7 Score=33.98 Aligned_cols=29 Identities=28% Similarity=0.329 Sum_probs=23.0
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++.|.|.+|.+-...
T Consensus 25 l~~isl~i~~Ge~~~l~G~nGsGKSTLl~ 53 (271)
T PRK13632 25 LKNVSFEINEGEYVAILGHNGSGKSTISK 53 (271)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33356899999999999999999665444
No 142
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=54.96 E-value=6.8 Score=33.31 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=23.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|.+-++++-||+++++-|.|.+|++-..+
T Consensus 20 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~ 48 (252)
T PRK14256 20 VKDVSMDFPENSVTAIIGPSGCGKSTVLR 48 (252)
T ss_pred EecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 44467999999999999999999765444
No 143
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=54.78 E-value=6.9 Score=33.25 Aligned_cols=29 Identities=7% Similarity=0.129 Sum_probs=23.8
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
-++++-||+++++-|.|.+|..-..+=|.
T Consensus 24 is~~i~~Ge~~~I~G~nGsGKSTLl~~i~ 52 (251)
T PRK14244 24 INLDIYKREVTAFIGPSGCGKSTFLRCFN 52 (251)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 56889999999999999999876665443
No 144
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=54.17 E-value=7.1 Score=33.51 Aligned_cols=31 Identities=13% Similarity=0.178 Sum_probs=24.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
|++-++++-||+++++-|.|.+|++-..+=|
T Consensus 29 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l 59 (260)
T PRK10744 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTF 59 (260)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 4445699999999999999999976555433
No 145
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=54.01 E-value=7.1 Score=33.47 Aligned_cols=32 Identities=6% Similarity=0.211 Sum_probs=24.7
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
|.+-++++-||+++++-|.|.+|++-..+=|.
T Consensus 23 l~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~ 54 (259)
T PRK14260 23 IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLN 54 (259)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 34467999999999999999999765554443
No 146
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=54.00 E-value=7.7 Score=31.91 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=23.1
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|+.-..+
T Consensus 25 l~~~~~~i~~Ge~~~l~G~nGsGKStLl~ 53 (194)
T cd03213 25 LKNVSGKAKPGELTAIMGPSGAGKSTLLN 53 (194)
T ss_pred eecceEEEcCCcEEEEECCCCCCHHHHHH
Confidence 44467999999999999999988664443
No 147
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=54.00 E-value=7.5 Score=31.87 Aligned_cols=29 Identities=21% Similarity=0.247 Sum_probs=22.8
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++.+-||++|++-|.|.+|++-..+
T Consensus 23 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~ 51 (192)
T cd03232 23 LNNISGYVKPGTLTALMGESGAGKTTLLD 51 (192)
T ss_pred EEccEEEEeCCcEEEEECCCCCCHHHHHH
Confidence 34456899999999999999988654444
No 148
>cd03691 BipA_TypA_II BipA_TypA_II: domain II of BipA (also called TypA) having homology to domain II of the elongation factors (EFs) EF-G and EF-Tu. BipA is a highly conserved protein with global regulatory properties in Escherichia coli. BipA is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways. BipA functions as a translation factor that is required specifically for the expression of the transcriptional modulator Fis. BipA binds to ribosomes at a site that coincides with that of EF-G and has a GTPase activity that is sensitive to high GDP:GTP ratios and, is stimulated by 70S ribosomes programmed with mRNA and aminoacylated tRNAs. The growth rate-dependent induction of BipA allows the efficient expression of Fis, thereby modulating a range of downstream processes, including DNA metabolism and type III secretion.
Probab=53.86 E-value=51 Score=23.46 Aligned_cols=17 Identities=29% Similarity=0.253 Sum_probs=13.9
Q ss_pred CcceecCCcEEEEEeec
Q psy145 109 TGVAVFPGQIVAARGSN 125 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N 125 (203)
+-=++.+||||++.|.+
T Consensus 60 ~v~~~~aG~I~~i~gl~ 76 (86)
T cd03691 60 EVEEAEAGDIVAIAGIE 76 (86)
T ss_pred ECcEECCCCEEEEECCC
Confidence 44578999999999964
No 149
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=53.83 E-value=7.2 Score=33.74 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=23.0
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|++-..+
T Consensus 17 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~ 45 (271)
T PRK13638 17 LKGLNLDFSLSPVTGLVGANGCGKSTLFM 45 (271)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33467999999999999999998664444
No 150
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=53.75 E-value=7.2 Score=33.82 Aligned_cols=30 Identities=7% Similarity=0.057 Sum_probs=23.7
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
.+-++++-||+++++-|.|.+|++-..+=|
T Consensus 42 ~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l 71 (272)
T PRK14236 42 FDISMRIPKNRVTAFIGPSGCGKSTLLRCF 71 (272)
T ss_pred eeEEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 335689999999999999999976555533
No 151
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=53.75 E-value=7.4 Score=32.89 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=23.1
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|.+-+|++-||+++++-|.|.+|.+-..+
T Consensus 19 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 47 (250)
T PRK11264 19 LHGIDLEVKPGEVVAIIGPSGSGKTTLLR 47 (250)
T ss_pred eccceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 34467999999999999999998664444
No 152
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=53.69 E-value=7.2 Score=34.49 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=22.6
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++-|.|..|.+=..+
T Consensus 21 ~~vsl~i~~Ge~~~l~G~NGaGKSTLl~ 48 (303)
T TIGR01288 21 NDLSFTIARGECFGLLGPNGAGKSTIAR 48 (303)
T ss_pred cceeEEEcCCcEEEEECCCCCCHHHHHH
Confidence 3356899999999999999998764444
No 153
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=53.54 E-value=7.2 Score=32.29 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=22.2
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-+|++-||+++|+-|.|..|+.-..+
T Consensus 23 l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~ 51 (202)
T cd03233 23 LKDFSGVVKPGEMVLVLGRPGSGCSTLLK 51 (202)
T ss_pred eeeEEEEECCCcEEEEECCCCCCHHHHHH
Confidence 33356899999999999999888654443
No 154
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=53.15 E-value=7.7 Score=33.12 Aligned_cols=28 Identities=18% Similarity=0.259 Sum_probs=22.2
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++-|.|.+|.+-..+
T Consensus 19 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~ 46 (255)
T PRK11231 19 NDLSLSLPTGKITALIGPNGCGKSTLLK 46 (255)
T ss_pred eeeeeEEcCCcEEEEECCCCCCHHHHHH
Confidence 3356889999999999999988654443
No 155
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=53.14 E-value=7.4 Score=33.58 Aligned_cols=29 Identities=14% Similarity=0.188 Sum_probs=23.5
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|.+-+|++-||+++++-|.|.+|.+-..+
T Consensus 26 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 54 (257)
T PRK14246 26 LKDITIKIPNNSIFGIMGPSGSGKSTLLK 54 (257)
T ss_pred EeceEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 44456999999999999999999765544
No 156
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=52.82 E-value=7.8 Score=32.23 Aligned_cols=29 Identities=21% Similarity=0.433 Sum_probs=23.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|++-..+
T Consensus 30 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~ 58 (226)
T cd03248 30 LQDVSFTLHPGEVTALVGPSGSGKSTVVA 58 (226)
T ss_pred ccceEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 44467999999999999999999655444
No 157
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=52.73 E-value=7.7 Score=32.84 Aligned_cols=29 Identities=21% Similarity=0.225 Sum_probs=22.5
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|.+-++++-||+++++-|.|.+|.+=..+
T Consensus 37 l~~vs~~i~~Ge~~~i~G~NGsGKSTLl~ 65 (236)
T cd03267 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLK 65 (236)
T ss_pred eeceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 34456899999999999999988654433
No 158
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=52.62 E-value=7.8 Score=33.67 Aligned_cols=32 Identities=6% Similarity=0.133 Sum_probs=25.2
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeeccc
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKIYS 138 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI~~ 138 (203)
++-++++-||+++|+-|.|.+|.+-..+=|..
T Consensus 41 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~G 72 (271)
T PRK14238 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNR 72 (271)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHHHh
Confidence 33568999999999999999997766654443
No 159
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=52.62 E-value=7.7 Score=32.12 Aligned_cols=25 Identities=24% Similarity=0.298 Sum_probs=20.4
Q ss_pred CcceecCCcEEEEEeecCCCCeEEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
-++++-||+++++.|.|.+|.+-..
T Consensus 17 ~s~~i~~Ge~~~i~G~nGsGKSTLl 41 (213)
T TIGR01277 17 FDLNVADGEIVAIMGPSGAGKSTLL 41 (213)
T ss_pred eEEEEeCCcEEEEECCCCCCHHHHH
Confidence 4689999999999999998854333
No 160
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=52.50 E-value=8 Score=31.36 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.1
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeE
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQF 131 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~f 131 (203)
|.+-++++-||+++++.|.|.+|++-
T Consensus 16 l~~vs~~i~~G~~~~i~G~nGsGKST 41 (182)
T cd03215 16 VRDVSFEVRAGEIVGIAGLVGNGQTE 41 (182)
T ss_pred ecceEEEEcCCcEEEEECCCCCCHHH
Confidence 44467999999999999999887543
No 161
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=52.47 E-value=7.9 Score=33.56 Aligned_cols=29 Identities=21% Similarity=0.288 Sum_probs=23.8
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|.+-++++-||+++++.|.|.+|..-..+
T Consensus 28 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 56 (268)
T PRK10419 28 LNNVSLSLKSGETVALLGRSGCGKSTLAR 56 (268)
T ss_pred EeceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 44567999999999999999999765544
No 162
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=52.41 E-value=7.9 Score=32.64 Aligned_cols=25 Identities=8% Similarity=0.251 Sum_probs=20.3
Q ss_pred cceecCCcEEEEEeecCCCCeEEEe
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++++-||++|++-|.|.+|.+=..+
T Consensus 5 s~~i~~Ge~~~i~G~nGsGKSTLl~ 29 (230)
T TIGR01184 5 NLTIQQGEFISLIGHSGCGKSTLLN 29 (230)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHH
Confidence 5788999999999999988654443
No 163
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=52.40 E-value=8.1 Score=31.97 Aligned_cols=29 Identities=17% Similarity=0.285 Sum_probs=22.9
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++=||++|++-|.|.+|++-..+
T Consensus 21 l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~ 49 (228)
T cd03257 21 LDDVSFSIKKGETLGLVGESGSGKSTLAR 49 (228)
T ss_pred ecCceeEEcCCCEEEEECCCCCCHHHHHH
Confidence 34457889999999999999999764443
No 164
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=52.20 E-value=7.9 Score=33.83 Aligned_cols=32 Identities=9% Similarity=0.117 Sum_probs=25.1
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
|.+-+++|-||++|++-|.|.+|++-..+=|.
T Consensus 37 l~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~ 68 (276)
T PRK14271 37 LDQVSMGFPARAVTSLMGPTGSGKTTFLRTLN 68 (276)
T ss_pred eeeeEEEEcCCcEEEEECCCCCCHHHHHHHHh
Confidence 33467999999999999999999776555443
No 165
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.98 E-value=8 Score=33.99 Aligned_cols=29 Identities=10% Similarity=0.161 Sum_probs=23.1
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
+-++++-||+++++-|.|.+|..-..+=|
T Consensus 57 ~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L 85 (286)
T PRK14275 57 KVNADILSKYVTAIIGPSGCGKSTFLRAI 85 (286)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 35689999999999999999976544433
No 166
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=51.93 E-value=8.2 Score=31.68 Aligned_cols=27 Identities=19% Similarity=0.210 Sum_probs=21.8
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-||+++++-|.|.+|++-..+
T Consensus 18 ~~~~~i~~G~~~~i~G~nGsGKSTLl~ 44 (208)
T cd03268 18 DISLHVKKGEIYGFLGPNGAGKTTTMK 44 (208)
T ss_pred eeEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 356889999999999999988654444
No 167
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=51.63 E-value=8.2 Score=32.74 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=24.1
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
+-++++-||++|++-|.|.+|++-..+=|.
T Consensus 20 ~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (246)
T PRK14269 20 DINMQIEQNKITALIGASGCGKSTFLRCFN 49 (246)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 356899999999999999999876655443
No 168
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=51.19 E-value=8.5 Score=32.91 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=22.6
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|.+-++++-+|+++++-|.|.+|.+-..+
T Consensus 12 l~~vsl~i~~Gei~~l~G~nGsGKSTLl~ 40 (248)
T PRK03695 12 LGPLSAEVRAGEILHLVGPNGAGKSTLLA 40 (248)
T ss_pred ecceEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 34467899999999999999998654333
No 169
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=50.95 E-value=8.5 Score=33.46 Aligned_cols=25 Identities=20% Similarity=0.252 Sum_probs=20.7
Q ss_pred CcceecCCcEEEEEeecCCCCeEEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
-++++-||+++++-|.|.+|++-..
T Consensus 31 isl~i~~Ge~~~I~G~NGsGKSTLl 55 (257)
T PRK11247 31 LDLHIPAGQFVAVVGRSGCGKSTLL 55 (257)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH
Confidence 5789999999999999998855433
No 170
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=50.35 E-value=9.2 Score=30.02 Aligned_cols=28 Identities=29% Similarity=0.367 Sum_probs=23.1
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
..+++-||+++++-|.|.+|..-..+-|
T Consensus 18 ~~~~i~~g~~~~i~G~nGsGKStll~~l 45 (157)
T cd00267 18 VSLTLKAGEIVALVGPNGSGKSTLLRAI 45 (157)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 6789999999999999999976555443
No 171
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=50.30 E-value=8.5 Score=33.82 Aligned_cols=26 Identities=15% Similarity=0.244 Sum_probs=21.0
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||++||+-|.|..|.+-..+
T Consensus 26 vs~~i~~Ge~~~i~G~nGaGKSTLl~ 51 (287)
T PRK13637 26 VNIEIEDGEFVGLIGHTGSGKSTLIQ 51 (287)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHH
Confidence 46899999999999999988554333
No 172
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=49.70 E-value=9.2 Score=33.04 Aligned_cols=27 Identities=26% Similarity=0.279 Sum_probs=21.5
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-||+++++-|.|.+|++-..+
T Consensus 27 ~isl~i~~Ge~~~I~G~nGsGKSTLl~ 53 (269)
T PRK13648 27 DVSFNIPKGQWTSIVGHNGSGKSTIAK 53 (269)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 356889999999999999988654443
No 173
>cd04090 eEF2_II_snRNP Loc2 eEF2_C_snRNP, cd01514/C terminal domain:eEF2_C_snRNP: This family includes C-terminal portion of the spliceosomal human 116kD U5 small nuclear ribonucleoprotein (snRNP) protein (U5-116 kD) and, its yeast counterpart Snu114p. This domain is homologous to domain II of the eukaryotic translational elongation factor EF-2. Yeast Snu114p is essential for cell viability and for splicing in vivo. U5-116 kD binds GTP. Experiments suggest that GTP binding and probably GTP hydrolysis is important for the function of the U5-116 kD/Snu114p. In complex with GTP, EF-2 promotes the translocation step of translation. During translocation the peptidyl-tRNA is moved from the A site to the P site, the uncharged tRNA from the P site to the E-site and, the mRNA is shifted one codon relative to the ribosome.
Probab=49.50 E-value=47 Score=24.41 Aligned_cols=17 Identities=18% Similarity=0.151 Sum_probs=13.4
Q ss_pred CcceecCCcEEEEEeec
Q psy145 109 TGVAVFPGQIVAARGSN 125 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N 125 (203)
+-=+.-+|+||++.|.+
T Consensus 67 ~v~~a~aGdIv~v~gl~ 83 (94)
T cd04090 67 EVNEAPAGNWVLIKGID 83 (94)
T ss_pred EcceeCCCCEEEEECcc
Confidence 34567899999999964
No 174
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=49.27 E-value=8.9 Score=33.74 Aligned_cols=27 Identities=19% Similarity=0.191 Sum_probs=21.8
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-+|++||+-|.|.+|++-..+
T Consensus 24 ~vsl~i~~Ge~v~i~G~nGsGKSTLl~ 50 (288)
T PRK13643 24 DIDLEVKKGSYTALIGHTGSGKSTLLQ 50 (288)
T ss_pred eeEEEEcCCCEEEEECCCCChHHHHHH
Confidence 357899999999999999988654433
No 175
>cd03699 lepA_II lepA_II: This subfamily represents the domain II of LepA, a GTP-binding protein localized in the cytoplasmic membrane. The N-terminal domain of LepA shares regions of homology to translation factors. In terms of interaction with the ribosome, EF-G, EF-Tu and IF2 have all been demonstrated to interact at overlapping sites on the ribosome. Chemical protection studies demonstrate that they all include the universally conserved alpha-sarcin loop as part of their binding site. These data indicate that LepA may bind to this location on the ribosome as well. LepA has never been observed in archaea, and eukaryl LepA is organellar. LepA is therefore a true bacterial GTPase, found only in the bacterial lineage.
Probab=49.06 E-value=88 Score=22.49 Aligned_cols=53 Identities=15% Similarity=0.109 Sum_probs=29.7
Q ss_pred cEEEEEEEeeCCCCCCCCcceeEEEeeccCCCce--EEEeecC-C-CcceecCCcEEEE-Eee
Q psy145 67 EITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGR--SISLKLP-E-TGVAVFPGQIVAA-RGS 124 (203)
Q Consensus 67 ~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~--rV~Ldls-~-~~~SLFPGQIVav-kG~ 124 (203)
.-++++||.+ |.|.+.+.+.=..... ..+ .+-+--. . +.=++.+|+|+++ +|.
T Consensus 15 G~i~~~Rv~s----G~l~~~~~v~~~~~~~-~~~i~~l~~~~~~~~~~~~~~aGdI~~v~~g~ 72 (86)
T cd03699 15 GVIALVRVFD----GTLKKGDKIRFMSTGK-EYEVEEVGIFRPEMTPTDELSAGQVGYIIAGI 72 (86)
T ss_pred CEEEEEEEEc----CEEcCCCEEEEecCCC-eEEEEEEEEECCCccCCceECCCCEEEEEccc
Confidence 4568999995 6677665553221111 111 2222211 2 5567899999998 453
No 176
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=48.95 E-value=9.9 Score=31.71 Aligned_cols=28 Identities=14% Similarity=0.195 Sum_probs=23.0
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-+|++-||+++++-|.|.+|.+-..+
T Consensus 17 ~~vs~~i~~Ge~~~l~G~nGsGKSTLl~ 44 (230)
T TIGR03410 17 RGVSLEVPKGEVTCVLGRNGVGKTTLLK 44 (230)
T ss_pred cceeeEECCCCEEEEECCCCCCHHHHHH
Confidence 3457899999999999999999765554
No 177
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=48.93 E-value=9.1 Score=32.13 Aligned_cols=20 Identities=15% Similarity=0.302 Sum_probs=17.1
Q ss_pred ceecCCcEEEEEeecCCCCe
Q psy145 111 VAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 111 ~SLFPGQIVavkG~N~~G~~ 130 (203)
+++-||+++++-|.|.+|..
T Consensus 1 l~i~~Ge~~~l~G~nGsGKS 20 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKT 20 (223)
T ss_pred CccCCCcEEEEECCCCCCHH
Confidence 46789999999999988854
No 178
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=48.52 E-value=9.8 Score=32.49 Aligned_cols=29 Identities=17% Similarity=0.245 Sum_probs=22.9
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||++|++-|.|..|.+-..+
T Consensus 21 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~ 49 (257)
T PRK10619 21 LKGVSLQANAGDVISIIGSSGSGKSTFLR 49 (257)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33456899999999999999998655444
No 179
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=48.52 E-value=9.8 Score=32.26 Aligned_cols=29 Identities=14% Similarity=0.375 Sum_probs=23.2
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|.+|.+-..+
T Consensus 19 l~~isl~i~~Ge~~~i~G~nGsGKSTLl~ 47 (253)
T TIGR02323 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLG 47 (253)
T ss_pred eecceEEEeCCcEEEEECCCCCCHHHHHH
Confidence 34457899999999999999999665444
No 180
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=48.32 E-value=9.7 Score=33.31 Aligned_cols=30 Identities=10% Similarity=0.121 Sum_probs=23.4
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-++++-||+++|+-|.|.+|++-..+=|
T Consensus 28 ~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l 57 (289)
T PRK13645 28 NNTSLTFKKNKVTCVIGTTGSGKSTMIQLT 57 (289)
T ss_pred eeeEEEEeCCCEEEEECCCCCCHHHHHHHH
Confidence 335689999999999999999976554433
No 181
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=48.11 E-value=9.9 Score=31.93 Aligned_cols=26 Identities=19% Similarity=0.296 Sum_probs=21.4
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++=||+++++-|.|.+|++-..+
T Consensus 24 vs~~i~~Ge~~~i~G~nGsGKSTLl~ 49 (237)
T PRK11614 24 VSLHINQGEIVTLIGANGAGKTTLLG 49 (237)
T ss_pred eEEEEcCCcEEEEECCCCCCHHHHHH
Confidence 56889999999999999998664443
No 182
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=48.01 E-value=9.9 Score=33.92 Aligned_cols=31 Identities=13% Similarity=0.113 Sum_probs=23.9
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
|++-++++-||+|+++-|.|..|++=..+=|
T Consensus 23 l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l 53 (306)
T PRK13537 23 VDGLSFHVQRGECFGLLGPNGAGKTTTLRML 53 (306)
T ss_pred EecceEEEeCCcEEEEECCCCCCHHHHHHHH
Confidence 3345699999999999999999976544433
No 183
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=47.74 E-value=10 Score=33.21 Aligned_cols=26 Identities=15% Similarity=0.273 Sum_probs=21.8
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-+|++||+-|.|.+|++-..+
T Consensus 25 vs~~i~~Ge~~~i~G~nGaGKSTLl~ 50 (283)
T PRK13636 25 ININIKKGEVTAILGGNGAGKSTLFQ 50 (283)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 56899999999999999998764444
No 184
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=47.71 E-value=51 Score=28.87 Aligned_cols=59 Identities=17% Similarity=0.325 Sum_probs=44.3
Q ss_pred cccEEEEEEEeeCCC-----CCCCCcceeEEEeeccCCCceEEEeecCC---CcceecCCcEEEEEee
Q psy145 65 TTEITAIGRIVCDTS-----DGKLNAASVLLEGDEVTSGGRSISLKLPE---TGVAVFPGQIVAARGS 124 (203)
Q Consensus 65 q~~v~vvGRI~~Ds~-----egkLn~~Sv~LEgsr~~g~G~rV~Ldls~---~~~SLFPGQIVavkG~ 124 (203)
...|+.+|||..|.. .|. .=.+.-|+.+|-...-..+++-++. ....|.-|+-|.|+|.
T Consensus 8 ~NkV~L~Grl~~d~e~~~~~~G~-~~~~f~laV~R~s~~~D~i~v~v~~rlae~~~l~kG~~v~VeGq 74 (219)
T PRK05813 8 NNKVYLEGKVVSELEFSHEMYGE-GFYNFKLEVPRLSDSKDILPVTVSERLLAGMDLKVGTLVIVEGQ 74 (219)
T ss_pred cCEEEEEEEEcCCceEEEEeCCe-EEEEEEEEeeccCCCccEEEEEEEhhhhhhhcccCCCEEEEEEE
Confidence 467999999999971 121 1235667888855566788998887 5556999999999997
No 185
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=47.64 E-value=10 Score=32.13 Aligned_cols=28 Identities=11% Similarity=0.075 Sum_probs=23.4
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++++-||++|++-|.|.+|.+-.++=|
T Consensus 22 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i 49 (250)
T PRK14245 22 ISMEIEEKSVVAFIGPSGCGKSTFLRLF 49 (250)
T ss_pred eeEEEeCCCEEEEECCCCCCHHHHHHHH
Confidence 4688999999999999999977666544
No 186
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=47.61 E-value=10 Score=33.63 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.3
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|.+|++-..+
T Consensus 56 vs~~i~~Ge~~~liG~NGsGKSTLl~ 81 (282)
T cd03291 56 INLKIEKGEMLAITGSTGSGKTSLLM 81 (282)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 56889999999999999988654444
No 187
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=47.49 E-value=11 Score=31.84 Aligned_cols=31 Identities=23% Similarity=0.332 Sum_probs=24.1
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
++-++++-||+++|+-|.|.+|.+-..+=|.
T Consensus 18 ~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~ 48 (248)
T PRK09580 18 RGLNLEVRPGEVHAIMGPNGSGKSTLSATLA 48 (248)
T ss_pred ecceeEEcCCCEEEEECCCCCCHHHHHHHHc
Confidence 3356889999999999999999775555333
No 188
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=47.47 E-value=10 Score=34.61 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=22.2
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-+|++-||+|+++-|.|..|.+=..+
T Consensus 59 ~is~~i~~Gei~gLlGpNGaGKSTLl~ 85 (340)
T PRK13536 59 GLSFTVASGECFGLLGPNGAGKSTIAR 85 (340)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 356899999999999999998764444
No 189
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=47.19 E-value=11 Score=32.69 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=24.0
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-++++-||+++|+-|.|.+|.+-..+=|
T Consensus 37 ~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l 66 (267)
T PRK14237 37 KGIDMQFEKNKITALIGPSGSGKSTYLRSL 66 (267)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 335689999999999999999977655544
No 190
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=47.09 E-value=11 Score=33.41 Aligned_cols=26 Identities=15% Similarity=0.176 Sum_probs=21.5
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|..|.+-..+
T Consensus 12 vs~~i~~Ge~~~l~G~NGaGKSTLl~ 37 (302)
T TIGR01188 12 VNFKVREGEVFGFLGPNGAGKTTTIR 37 (302)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHH
Confidence 46889999999999999988664444
No 191
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=46.91 E-value=10 Score=33.37 Aligned_cols=26 Identities=23% Similarity=0.261 Sum_probs=21.6
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||++||+-|.|.+|++-..+
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~ 51 (290)
T PRK13634 26 VNVSIPSGSYVAIIGHTGSGKSTLLQ 51 (290)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHH
Confidence 46889999999999999998765444
No 192
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=46.87 E-value=11 Score=32.67 Aligned_cols=26 Identities=19% Similarity=0.212 Sum_probs=22.1
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|.+|++-..+
T Consensus 26 vsl~i~~Ge~~~i~G~nGsGKSTLl~ 51 (269)
T PRK11831 26 ISLTVPRGKITAIMGPSGIGKTTLLR 51 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 56899999999999999999765554
No 193
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=46.78 E-value=11 Score=32.49 Aligned_cols=30 Identities=17% Similarity=0.072 Sum_probs=23.8
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-++++-||++|++-|.|.+|++-..+=|
T Consensus 27 ~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l 56 (264)
T PRK14243 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCF 56 (264)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 335799999999999999999976555533
No 194
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=46.49 E-value=11 Score=36.20 Aligned_cols=28 Identities=21% Similarity=0.436 Sum_probs=22.3
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEE
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
|++-+|++.+|+++++-|.|.+|.+=..
T Consensus 23 l~~vs~~i~~Ge~~~iiG~NGsGKSTLl 50 (556)
T PRK11819 23 LKDISLSFFPGAKIGVLGLNGAGKSTLL 50 (556)
T ss_pred eeCceEEECCCCEEEEECCCCCCHHHHH
Confidence 3446799999999999999998855333
No 195
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=46.30 E-value=12 Score=31.37 Aligned_cols=25 Identities=4% Similarity=-0.072 Sum_probs=20.2
Q ss_pred cceecCCcEEEEEeecCCCCeEEEe
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++.+=+|++|++.|.|..|++=..+
T Consensus 7 s~~i~~Ge~~~l~G~NGsGKSTLlk 31 (213)
T PRK15177 7 DFVMGYHEHIGILAAPGSGKTTLTR 31 (213)
T ss_pred eEEEcCCCEEEEECCCCCCHHHHHH
Confidence 5788899999999999988654443
No 196
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=46.09 E-value=11 Score=32.83 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=23.0
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++=||+++++.|.|.+|++-..+
T Consensus 26 l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~ 54 (280)
T PRK13633 26 LDDVNLEVKKGEFLVILGRNGSGKSTIAK 54 (280)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33456889999999999999999664444
No 197
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=45.73 E-value=12 Score=31.81 Aligned_cols=29 Identities=7% Similarity=0.114 Sum_probs=23.3
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++=||+++++-|.|.+|++-..+
T Consensus 20 l~~is~~i~~Ge~~~l~G~nGsGKSTLl~ 48 (253)
T PRK14267 20 IKGVDLKIPQNGVFALMGPSGCGKSTLLR 48 (253)
T ss_pred eecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33456899999999999999999765554
No 198
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=45.60 E-value=10 Score=32.69 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=20.6
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
.+.++.+|++|++-|.|.+|.+=.++
T Consensus 18 ~~~~i~~Ge~~~i~G~NGsGKSTLlk 43 (246)
T cd03237 18 EGGSISESEVIGILGPNGIGKTTFIK 43 (246)
T ss_pred ecCCcCCCCEEEEECCCCCCHHHHHH
Confidence 56788999999999999988553333
No 199
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=45.30 E-value=12 Score=32.48 Aligned_cols=26 Identities=19% Similarity=0.217 Sum_probs=21.6
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|.+|.+-..+
T Consensus 43 is~~i~~Ge~~~l~G~nGsGKSTLl~ 68 (269)
T cd03294 43 VSLDVREGEIFVIMGLSGSGKSTLLR 68 (269)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 56889999999999999998654444
No 200
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=45.28 E-value=12 Score=33.32 Aligned_cols=32 Identities=9% Similarity=0.070 Sum_probs=25.0
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
|++-++++-||+++++-|.|.+|+.-..+=|.
T Consensus 61 L~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~ 92 (305)
T PRK14264 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLN 92 (305)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 33357899999999999999999766555443
No 201
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=45.21 E-value=12 Score=32.68 Aligned_cols=27 Identities=22% Similarity=0.242 Sum_probs=22.1
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++=||++|++.|.|.+|.+-..+
T Consensus 25 ~v~l~i~~Ge~~~I~G~nGsGKSTLl~ 51 (277)
T PRK13642 25 GVSFSITKGEWVSIIGQNGSGKSTTAR 51 (277)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHHH
Confidence 356889999999999999998665544
No 202
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=44.55 E-value=12 Score=32.67 Aligned_cols=29 Identities=21% Similarity=0.226 Sum_probs=22.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++=||++||+-|.|.+|++-..+
T Consensus 23 l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~ 51 (279)
T PRK13650 23 LNDVSFHVKQGEWLSIIGHNGSGKSTTVR 51 (279)
T ss_pred eeeeEEEEeCCCEEEEECCCCCCHHHHHH
Confidence 33356888899999999999988655444
No 203
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=44.41 E-value=26 Score=26.38 Aligned_cols=25 Identities=8% Similarity=0.131 Sum_probs=18.8
Q ss_pred cChHHHHHHHHhcCCCeEEEeeehh
Q psy145 168 LPLADYLVNVFEKSYNSAFITTVAD 192 (203)
Q Consensus 168 PpL~DLL~~v~~~~PdvLvlt~~~~ 192 (203)
.|..+|++.+.+.+||++.|+....
T Consensus 37 ~~~~~l~~~~~~~~pdvV~iS~~~~ 61 (119)
T cd02067 37 VPPEEIVEAAKEEDADAIGLSGLLT 61 (119)
T ss_pred CCHHHHHHHHHHcCCCEEEEecccc
Confidence 3667888888888888888877633
No 204
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.64 E-value=21 Score=31.00 Aligned_cols=23 Identities=13% Similarity=0.075 Sum_probs=20.4
Q ss_pred ChHHHHHHHHhcCCCeEEEeeeh
Q psy145 169 PLADYLVNVFEKSYNSAFITTVA 191 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~~ 191 (203)
.+..|++++++++||+||++|--
T Consensus 27 ~l~~l~~~~~~~~~D~lli~GDi 49 (253)
T TIGR00619 27 FLDDLLEFAKAEQIDALLVAGDV 49 (253)
T ss_pred HHHHHHHHHHHcCCCEEEECCcc
Confidence 57889999999999999999963
No 205
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=43.60 E-value=13 Score=32.72 Aligned_cols=30 Identities=13% Similarity=0.147 Sum_probs=23.4
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-+|++-||+++++-|.|.+|+.-..+=|
T Consensus 56 ~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l 85 (285)
T PRK14254 56 DDVSMDIPENQVTAMIGPSGCGKSTFLRCI 85 (285)
T ss_pred eeeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 335689999999999999999876544433
No 206
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=43.52 E-value=14 Score=32.51 Aligned_cols=27 Identities=11% Similarity=0.233 Sum_probs=22.3
Q ss_pred eecCCCcceecCCcEEEEEeecCCCCe
Q psy145 104 LKLPETGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 104 Ldls~~~~SLFPGQIVavkG~N~~G~~ 130 (203)
..|++=+|.|=||++|.|+|.|..|++
T Consensus 16 ~lf~~L~f~l~~Ge~~~i~G~NG~GKT 42 (209)
T COG4133 16 TLFSDLSFTLNAGEALQITGPNGAGKT 42 (209)
T ss_pred eeecceeEEEcCCCEEEEECCCCCcHH
Confidence 345556799999999999999999854
No 207
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=43.51 E-value=13 Score=32.57 Aligned_cols=30 Identities=17% Similarity=0.342 Sum_probs=23.4
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-++++=||+++++-|.|.+|++-..+=|
T Consensus 18 ~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l 47 (272)
T PRK13547 18 RDLSLRIEPGRVTALLGRNGAGKSTLLKAL 47 (272)
T ss_pred ecceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 335688999999999999999977555533
No 208
>cd04092 mtEFG2_II_like mtEFG2_C: C-terminus of mitochondrial Elongation factor G2 (mtEFG2)-like proteins found in eukaryotes. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more complex than that in prokaryotes, with both cytoplasmic and mitochondrial elongation factors and multiple isoforms being expressed in certain species. Eukaryotic EF-2 operates in the cytosolic protein synthesis machinery of eukaryotes, EF-Gs in protein synthesis in bacteria. Eukaryotic mtEFG1 proteins show significant homology to bacterial EF-Gs. No clear phenotype has been found for mutants in the yeast homologue of mtEFG2, MEF2. There are two forms of mtEFG present in mammals (designated mtEFG1s and mtEFG2s) mtEFG1s are n
Probab=43.46 E-value=72 Score=22.62 Aligned_cols=59 Identities=17% Similarity=0.192 Sum_probs=31.8
Q ss_pred cEEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEE-Ee---ecCC--CcceecCCcEEEEEeecC--CCCeE
Q psy145 67 EITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSI-SL---KLPE--TGVAVFPGQIVAARGSNP--SRNQF 131 (203)
Q Consensus 67 ~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV-~L---dls~--~~~SLFPGQIVavkG~N~--~G~~f 131 (203)
..++++||.+ |.|...+-+.-.. . +...+| +| .-.+ +.=++.+|+||++.|.+. .|+.+
T Consensus 15 g~i~~~Ri~s----Gtl~~g~~v~~~~-~-~~~~~v~~l~~~~g~~~~~v~~~~aGdI~~i~gl~~~~~Gdtl 81 (83)
T cd04092 15 GPLTFVRVYS----GTLKRGSALYNTN-T-GKKERISRLLQPFADQYQEIPSLSAGNIGVITGLKQTRTGDTL 81 (83)
T ss_pred CeEEEEEEec----CEECCCCEEEECC-C-CCEEEeeEEEEEECCCceECCeeCCCCEEEEECCCCcccCCEE
Confidence 4578899985 5555544331111 1 111111 22 1112 446789999999999643 45544
No 209
>PF04016 DUF364: Domain of unknown function (DUF364); InterPro: IPR007161 This is a entry represents of bacterial and archaeal proteins of unknown function.; PDB: 3L5O_B 3NPG_A.
Probab=43.39 E-value=89 Score=25.23 Aligned_cols=77 Identities=16% Similarity=0.094 Sum_probs=43.3
Q ss_pred eecCCcEEEEEe-ecC-------CCCeEEEeecccCCCCCCCCCccccccccccccceEEEEcCc-----ChHHHHHHHH
Q psy145 112 AVFPGQIVAARG-SNP-------SRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGL-----PLADYLVNVF 178 (203)
Q Consensus 112 SLFPGQIVavkG-~N~-------~G~~fvV~eI~~~p~lp~p~s~~~~~~~~~~~~l~i~~A~GP-----pL~DLL~~v~ 178 (203)
.+++|..|++-| ..| .+..+.|-++-....-..+-..+..........-|+++.+|- -+++||+.|+
T Consensus 7 ~~~~~~~V~~VG~f~P~~~~l~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~l~~aD~viiTGsTlvN~Ti~~iL~~~~ 86 (147)
T PF04016_consen 7 EIGPGDKVGMVGYFQPLVEKLKERGAEVRVFDLNPDNIGEEPGDVPDEDAEEILPWADVVIITGSTLVNGTIDDILELAR 86 (147)
T ss_dssp CTTTTSEEEEES--HCCHHHHCCCCSEEEEEESSGGG--SSCT-EEGGGHHHHGGG-SEEEEECHHCCTTTHHHHHHHTT
T ss_pred hhcCCCEEEEEcCcHHHHHHHhcCCCCEEEEECCCCCCCCCCCcCCHHHHHHHHccCCEEEEEeeeeecCCHHHHHHhCc
Confidence 578999999999 445 566666665543111111100011111111146789999994 7789999999
Q ss_pred hcCCCeEEEeee
Q psy145 179 EKSYNSAFITTV 190 (203)
Q Consensus 179 ~~~PdvLvlt~~ 190 (203)
. ...++|.|.
T Consensus 87 ~--~~~vil~Gp 96 (147)
T PF04016_consen 87 N--AREVILYGP 96 (147)
T ss_dssp T--SSEEEEESC
T ss_pred c--CCeEEEEec
Confidence 3 445566654
No 210
>PRK15118 universal stress global response regulator UspA; Provisional
Probab=42.78 E-value=29 Score=26.38 Aligned_cols=30 Identities=3% Similarity=-0.196 Sum_probs=25.6
Q ss_pred eEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 161 RVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 161 ~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
...+..|.|...+++++.+..+|.+|+-+.
T Consensus 83 ~~~~~~G~p~~~I~~~a~~~~~DLIV~Gs~ 112 (144)
T PRK15118 83 ETLSGSGDLGQVLVDAIKKYDMDLVVCGHH 112 (144)
T ss_pred EEEEEecCHHHHHHHHHHHhCCCEEEEeCc
Confidence 456678999999999999999999999554
No 211
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=42.68 E-value=14 Score=31.84 Aligned_cols=31 Identities=10% Similarity=0.228 Sum_probs=23.7
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
|.+-++++=||++|++-|.|.+|.+-..+=|
T Consensus 23 l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l 53 (261)
T PRK14258 23 LEGVSMEIYQSKVTAIIGPSGCGKSTFLKCL 53 (261)
T ss_pred eeceEEEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 3445688999999999999999865544433
No 212
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=42.54 E-value=13 Score=32.92 Aligned_cols=29 Identities=24% Similarity=0.247 Sum_probs=23.5
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
+-++++-||+++++-|.|..|.+-..+=|
T Consensus 20 ~is~~i~~Gei~~l~G~NGaGKTTLl~~l 48 (301)
T TIGR03522 20 EVSFEAQKGRIVGFLGPNGAGKSTTMKII 48 (301)
T ss_pred EeEEEEeCCeEEEEECCCCCCHHHHHHHH
Confidence 35699999999999999999976655533
No 213
>PRK15005 universal stress protein F; Provisional
Probab=42.24 E-value=43 Score=25.20 Aligned_cols=30 Identities=20% Similarity=0.218 Sum_probs=26.5
Q ss_pred cceEEEEcCcChHHHHHHHHhcCCCeEEEe
Q psy145 159 KLRVSYEKGLPLADYLVNVFEKSYNSAFIT 188 (203)
Q Consensus 159 ~l~i~~A~GPpL~DLL~~v~~~~PdvLvlt 188 (203)
+....+..|.|...+++++.++.+|.+|+.
T Consensus 85 ~~~~~v~~G~p~~~I~~~a~~~~~DLIV~G 114 (144)
T PRK15005 85 RVHVHVEEGSPKDRILELAKKIPADMIIIA 114 (144)
T ss_pred ceEEEEeCCCHHHHHHHHHHHcCCCEEEEe
Confidence 457788899999999999999999988884
No 214
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=42.02 E-value=17 Score=30.33 Aligned_cols=26 Identities=31% Similarity=0.390 Sum_probs=19.7
Q ss_pred cceecCCcEEEEEeecCCCCeEEEeec
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
.+++.|| ++++-|.|..|++=..+-|
T Consensus 17 ~l~~~~g-~~~i~G~nGsGKStll~al 42 (197)
T cd03278 17 TIPFPPG-LTAIVGPNGSGKSNIIDAI 42 (197)
T ss_pred eeecCCC-cEEEECCCCCCHHHHHHHH
Confidence 3567889 9999999999975544444
No 215
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=41.88 E-value=15 Score=30.50 Aligned_cols=28 Identities=14% Similarity=0.175 Sum_probs=22.5
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++.+=||+++++-|.|..|+.-..+=|
T Consensus 20 vs~~i~~Ge~~~i~G~nGsGKSTLl~~i 47 (218)
T cd03290 20 INIRIPTGQLTMIVGQVGCGKSSLLLAI 47 (218)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 4688899999999999999876555433
No 216
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=41.09 E-value=15 Score=34.57 Aligned_cols=26 Identities=23% Similarity=0.180 Sum_probs=21.3
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeE
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQF 131 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~f 131 (203)
|++-++++.||+++++-|.|.+|++=
T Consensus 19 l~~vsl~i~~Ge~~~liG~nGsGKST 44 (490)
T PRK10938 19 LQLPSLTLNAGDSWAFVGANGSGKSA 44 (490)
T ss_pred cccceEEEcCCCEEEEECCCCCCHHH
Confidence 33457999999999999999988543
No 217
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=40.99 E-value=28 Score=31.78 Aligned_cols=32 Identities=13% Similarity=0.052 Sum_probs=21.9
Q ss_pred ceEEEEcC--cChHHHHHHHHhcCCCeEEEeeeh
Q psy145 160 LRVSYEKG--LPLADYLVNVFEKSYNSAFITTVA 191 (203)
Q Consensus 160 l~i~~A~G--PpL~DLL~~v~~~~PdvLvlt~~~ 191 (203)
++.++-|. |=|..-.+.+++.|||+|+|.|..
T Consensus 63 mKaIVv~q~vpGt~~af~kIkekRpDIl~ia~~~ 96 (275)
T PF12683_consen 63 MKAIVVSQAVPGTAEAFRKIKEKRPDILLIAGEP 96 (275)
T ss_dssp EEEEEEE-SS---HHHHHHHHHH-TTSEEEESS-
T ss_pred ccEEEEeCCCcchHHHHHHHHhcCCCeEEEcCCC
Confidence 45555544 889999999999999999999873
No 218
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=40.38 E-value=15 Score=33.25 Aligned_cols=35 Identities=9% Similarity=0.095 Sum_probs=27.3
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeecccCC
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIYSDA 140 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p 140 (203)
|.+-++++-||++||+-|.|.+|..-..+-|+...
T Consensus 98 L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~ 132 (329)
T PRK14257 98 LHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLN 132 (329)
T ss_pred eeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 34456899999999999999999876666565443
No 219
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=40.23 E-value=16 Score=31.57 Aligned_cols=27 Identities=22% Similarity=0.250 Sum_probs=21.7
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEE
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fv 132 (203)
|++-++++=||++||+-|.|.+|.+-.
T Consensus 29 l~~vsl~i~~Ge~~~i~G~NGsGKSTL 55 (267)
T PRK15112 29 VKPLSFTLREGQTLAIIGENGSGKSTL 55 (267)
T ss_pred eeeeeEEecCCCEEEEEcCCCCCHHHH
Confidence 344568889999999999999886633
No 220
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=39.84 E-value=16 Score=31.21 Aligned_cols=28 Identities=7% Similarity=0.160 Sum_probs=22.6
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++++=||+++++-|.|.+|++-..+=|
T Consensus 31 vs~~i~~Ge~~~l~G~nGsGKSTLl~~l 58 (259)
T PRK14274 31 INLSIPENEVTAIIGPSGCGKSTFIKTL 58 (259)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 5688889999999999999977555533
No 221
>COG2332 CcmE Cytochrome c-type biogenesis protein CcmE [Posttranslational modification, protein turnover, chaperones]
Probab=39.73 E-value=32 Score=28.98 Aligned_cols=87 Identities=14% Similarity=0.110 Sum_probs=47.1
Q ss_pred hhccccccccCcc------CccccEEEEEEEeeCCCCCC-CCcceeEEEeeccCCCceEEEeecCCCcceec-CCcEEEE
Q psy145 50 TIGDITLLVPFLF------GDTTEITAIGRIVCDTSDGK-LNAASVLLEGDEVTSGGRSISLKLPETGVAVF-PGQIVAA 121 (203)
Q Consensus 50 l~~~Ieef~~~~~------~sq~~v~vvGRI~~Ds~egk-Ln~~Sv~LEgsr~~g~G~rV~Ldls~~~~SLF-PGQIVav 121 (203)
+..+|.-|..++. .....+.+-|.+...+ =.| -+..++-++-.+. ...|++....-==.|| =||-|++
T Consensus 30 l~~ni~~fy~Psel~~~~~~~G~rlR~GGlV~~GS-v~R~~~~~~v~F~vtD~---~~~v~V~Y~GiLPDLFREGQgVVa 105 (153)
T COG2332 30 LRSNIDYFYTPSELLEGKVETGQRLRLGGLVEAGS-VQRDPGSLKVSFVVTDG---NKSVTVSYEGILPDLFREGQGVVA 105 (153)
T ss_pred hccCceEEECHHHhccccccCCcEEEEeeeEeece-EEecCCCcEEEEEEecC---CceEEEEEeccCchhhhcCCeEEE
Confidence 3455666665532 2244555666555443 111 1222233333211 3444444444111233 5999999
Q ss_pred EeecCCCCeEEEeecccCC
Q psy145 122 RGSNPSRNQFIATKIYSDA 140 (203)
Q Consensus 122 kG~N~~G~~fvV~eI~~~p 140 (203)
+|.-..|+.|.+++|+..-
T Consensus 106 ~G~~~~~~~f~A~~vLAKH 124 (153)
T COG2332 106 EGQLQGGGVFEAKEVLAKH 124 (153)
T ss_pred EEEecCCCEEEeeehhhcC
Confidence 9999888999999996543
No 222
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=39.35 E-value=16 Score=31.93 Aligned_cols=28 Identities=29% Similarity=0.402 Sum_probs=22.8
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++++-+|+++++.|.|.+|.+-..+=|
T Consensus 26 vsl~i~~Ge~~~i~G~nGaGKSTLl~~i 53 (279)
T PRK13635 26 VSFSVYEGEWVAIVGHNGSGKSTLAKLL 53 (279)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHHHH
Confidence 4588999999999999999976655433
No 223
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=38.94 E-value=17 Score=35.85 Aligned_cols=28 Identities=21% Similarity=0.298 Sum_probs=22.5
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-+|++-||++||+-|.|.+|.+=...
T Consensus 18 ~~vs~~i~~Ge~v~LvG~NGsGKSTLLk 45 (638)
T PRK10636 18 DNATATINPGQKVGLVGKNGCGKSTLLA 45 (638)
T ss_pred cCcEEEECCCCEEEEECCCCCCHHHHHH
Confidence 3467999999999999999999654333
No 224
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=38.92 E-value=17 Score=31.42 Aligned_cols=29 Identities=10% Similarity=0.191 Sum_probs=23.5
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
+-++.+=||+++++-|.|.+|.+-..+=|
T Consensus 26 ~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l 54 (261)
T PRK14263 26 DSHVPIRKNEITGFIGPSGCGKSTVLRSL 54 (261)
T ss_pred eeEEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 35688999999999999999976655533
No 225
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=38.29 E-value=17 Score=34.28 Aligned_cols=30 Identities=20% Similarity=0.292 Sum_probs=23.7
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++-++++-+|+++++-|.|.+|++=..+=|
T Consensus 18 ~~isl~i~~Ge~~~liG~nGsGKSTLl~~i 47 (500)
T TIGR02633 18 DGIDLEVRPGECVGLCGENGAGKSTLMKIL 47 (500)
T ss_pred cceEEEEeCCcEEEEECCCCCCHHHHHHHH
Confidence 335699999999999999999976555533
No 226
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=37.83 E-value=21 Score=31.65 Aligned_cols=25 Identities=16% Similarity=0.442 Sum_probs=20.8
Q ss_pred CcceecCCcEEEEEeecCCCCeEEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
-+|.|+||++.++-|-..+|+.-..
T Consensus 25 vsF~l~PGeVLgiVGESGSGKtTLL 49 (258)
T COG4107 25 VSFDLYPGEVLGIVGESGSGKTTLL 49 (258)
T ss_pred cceeecCCcEEEEEecCCCcHHhHH
Confidence 4689999999999999998865433
No 227
>cd03689 RF3_II RF3_II: this subfamily represents the domain II of bacterial Release Factor 3 (RF3). Termination of protein synthesis by the ribosome requires two release factor (RF) classes. The class II RF3 is a GTPase that removes class I RFs (RF1 or RF2) from the ribosome after release of the nascent polypeptide. RF3 in the GDP state binds to the ribosomal class I RF complex, followed by an exchange of GDP for GTP and release of the class I RF. Sequence comparison of class II release factors with elongation factors shows that prokaryotic RF3 is more similar to EF-G whereas eukaryotic eRF3 is more similar to eEF1A, implying that their precise function may differ.
Probab=37.37 E-value=1.3e+02 Score=21.77 Aligned_cols=58 Identities=14% Similarity=0.170 Sum_probs=33.1
Q ss_pred EEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEE-Ee---ecCC--CcceecCCcEEEEEeecC--CCCeE
Q psy145 68 ITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSI-SL---KLPE--TGVAVFPGQIVAARGSNP--SRNQF 131 (203)
Q Consensus 68 v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV-~L---dls~--~~~SLFPGQIVavkG~N~--~G~~f 131 (203)
-++++||.+ |+|.+.+.+.- ++ .+...+| +| .-.+ +-=++.+|+||++-|... +|+.+
T Consensus 17 kla~~Rv~s----G~l~~g~~v~~-~~-~~~~~kv~~l~~~~g~~~~~v~~a~aGdIv~v~gl~~~~~Gdtl 82 (85)
T cd03689 17 RIAFVRVCS----GKFERGMKVKH-VR-LGKEVRLSNPQQFFAQDRETVDEAYPGDIIGLVNPGNFQIGDTL 82 (85)
T ss_pred EEEEEEEEC----CEEcCCCEEEE-cC-CCCEEEeeEeEEEecCCeeEcCEECCCCEEEEECCCCccccCEe
Confidence 358899995 66776665532 21 1112222 22 1112 445688999999999642 45554
No 228
>PRK13150 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=37.14 E-value=2.5e+02 Score=23.62 Aligned_cols=72 Identities=13% Similarity=0.092 Sum_probs=45.1
Q ss_pred ccccEEEEEEEeeCCCCCCCC-cceeEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccC
Q psy145 64 DTTEITAIGRIVCDTSDGKLN-AASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSD 139 (203)
Q Consensus 64 sq~~v~vvGRI~~Ds~egkLn-~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~ 139 (203)
....+.+-|.|...+ =.+-. ...+.+.-.+. ...|+..... -.=-|-.||=|+++|+--.++.|.+++|+.-
T Consensus 56 ~g~~iRvgG~V~~GS-v~r~~~~~~v~F~vtD~---~~~v~V~Y~GilPDlFrEG~gVVveG~~~~~g~F~A~evLAK 129 (159)
T PRK13150 56 VGQRLRVGGMVMPGS-VRRDPDSLKVNFSLYDA---EGSVTVSYEGILPDLFREGQGVVVQGTLEKGNHVLAHEVLAK 129 (159)
T ss_pred CCCEEEEeeEEeCCc-EEECCCCcEEEEEEEcC---CcEEEEEEeccCCccccCCCeEEEEEEECCCCEEEEeEEEeC
Confidence 356778888888655 11100 11233333222 3456666666 3345668999999999877789999999653
No 229
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=37.10 E-value=18 Score=32.81 Aligned_cols=26 Identities=12% Similarity=0.249 Sum_probs=21.3
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++++-|.|.+|++=..+
T Consensus 24 vsl~i~~Gei~~iiG~nGsGKSTLlk 49 (343)
T PRK11153 24 VSLHIPAGEIFGVIGASGAGKSTLIR 49 (343)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHH
Confidence 46899999999999999988654443
No 230
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=36.88 E-value=20 Score=34.19 Aligned_cols=27 Identities=15% Similarity=0.068 Sum_probs=21.9
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEE
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
++-++++-||++|++-|.|.+|++=..
T Consensus 18 ~~vsl~i~~Ge~~~liG~NGsGKSTLl 44 (530)
T PRK15064 18 ENISVKFGGGNRYGLIGANGCGKSTFM 44 (530)
T ss_pred eCCEEEECCCCEEEEECCCCCCHHHHH
Confidence 346799999999999999998855433
No 231
>cd00293 USP_Like Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.
Probab=36.72 E-value=70 Score=22.50 Aligned_cols=33 Identities=15% Similarity=0.069 Sum_probs=27.2
Q ss_pred ccceEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 158 YKLRVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 158 ~~l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
.++...+-.|.+..+|.+++.+..+|.+|+-..
T Consensus 70 ~~~~~~~~~~~~~~~i~~~~~~~~~dlvvig~~ 102 (130)
T cd00293 70 VKVETVVLEGDPAEAILEAAEELGADLIVMGSR 102 (130)
T ss_pred CceEEEEecCCCHHHHHHHHHHcCCCEEEEcCC
Confidence 345666778888999999999999999998654
No 232
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=36.65 E-value=19 Score=32.59 Aligned_cols=34 Identities=15% Similarity=0.130 Sum_probs=26.3
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeecccC
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIYSD 139 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~ 139 (203)
|++-++++.+|++||+-|-|.+|++-.++=|...
T Consensus 31 l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl 64 (327)
T PRK11308 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMI 64 (327)
T ss_pred EeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcC
Confidence 3335799999999999999999987666655443
No 233
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=36.57 E-value=17 Score=29.80 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=21.1
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-|| ++++-|.|.+|++-..+
T Consensus 18 ~vs~~i~~g-~~~i~G~nGsGKSTLl~ 43 (211)
T cd03264 18 GVSLTLGPG-MYGLLGPNGAGKTTLMR 43 (211)
T ss_pred ceeEEEcCC-cEEEECCCCCCHHHHHH
Confidence 356899999 99999999998665444
No 234
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=36.19 E-value=19 Score=31.42 Aligned_cols=26 Identities=23% Similarity=0.220 Sum_probs=21.0
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++.+=||++|++.|.|..|.+-..+
T Consensus 26 v~l~i~~Ge~~~I~G~nGaGKSTLl~ 51 (282)
T PRK13640 26 ISFSIPRGSWTALIGHNGSGKSTISK 51 (282)
T ss_pred EEEEEcCCCEEEEECCCCCcHHHHHH
Confidence 46888899999999999988554444
No 235
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=35.85 E-value=19 Score=34.00 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=21.4
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-+|+++++-|.|.+|.+=..+
T Consensus 282 isl~i~~Ge~~~l~G~NGsGKSTLlk 307 (510)
T PRK09700 282 ISFSVCRGEILGFAGLVGSGRTELMN 307 (510)
T ss_pred eeEEEcCCcEEEEECCCCCCHHHHHH
Confidence 46889999999999999988654433
No 236
>PF14836 Ubiquitin_3: Ubiquitin-like domain; PDB: 3JYU_A 4A3O_B 3PPA_A 3T9L_A 4A3P_A 3PV1_A.
Probab=35.66 E-value=55 Score=25.02 Aligned_cols=32 Identities=16% Similarity=0.142 Sum_probs=18.6
Q ss_pred ceEEEe-ecCC--CcceecCCcEEEEEeecCCCCe
Q psy145 99 GRSISL-KLPE--TGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 99 G~rV~L-dls~--~~~SLFPGQIVavkG~N~~G~~ 130 (203)
+..-+| +... ..-.|..||.|.++=+|..|.+
T Consensus 52 ~~~e~L~~~~~Tv~da~L~~gQ~vliE~rn~DGtW 86 (88)
T PF14836_consen 52 NSYELLNNPEITVEDAGLYDGQVVLIEERNEDGTW 86 (88)
T ss_dssp TCEEEE--TTSBTTTTT--TTEEEEEEE--TTS--
T ss_pred cchhhhCCCCccHHHccCcCCCEEEEEeeccCCCC
Confidence 344555 3333 6788999999999999998864
No 237
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=35.48 E-value=20 Score=35.23 Aligned_cols=26 Identities=12% Similarity=0.133 Sum_probs=21.3
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEE
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
+-+|++-||++|++-|.|.+|.+-..
T Consensus 21 ~is~~i~~Ge~v~LvG~NGsGKSTLL 46 (635)
T PRK11147 21 NAELHIEDNERVCLVGRNGAGKSTLM 46 (635)
T ss_pred CcEEEECCCCEEEEECCCCCCHHHHH
Confidence 35699999999999999999865433
No 238
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=35.41 E-value=20 Score=32.28 Aligned_cols=26 Identities=15% Similarity=0.084 Sum_probs=21.1
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++=||+++|+-|.|.+|.+-..+
T Consensus 45 vsl~i~~Ge~~~I~G~nGsGKSTLl~ 70 (320)
T PRK13631 45 ISYTFEKNKIYFIIGNSGSGKSTLVT 70 (320)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 46888899999999999988654444
No 239
>PF12857 TOBE_3: TOBE-like domain; InterPro: IPR024765 The TOBE (transport-associated OB) domain [] always occurs as a dimer and it is found in ABC transporters immediately after the ATPase domain. This entry represents a TOBE-like domain, found in the C terminus of ATPase subunit CysA. CysA is part of the CysATWP ABC transporter complex, involved in sulphate/thiosulphate import [, ].
Probab=35.19 E-value=73 Score=21.65 Aligned_cols=35 Identities=31% Similarity=0.498 Sum_probs=26.7
Q ss_pred eeEEEeeccCCCceEEEeecCC--CcceecCCcEEEEE
Q psy145 87 SVLLEGDEVTSGGRSISLKLPE--TGVAVFPGQIVAAR 122 (203)
Q Consensus 87 Sv~LEgsr~~g~G~rV~Ldls~--~~~SLFPGQIVavk 122 (203)
.+-||-.+. ..|..|...|+. ....+++||.|.++
T Consensus 20 ~vRlEl~~~-~~~~~iEvel~~~~~~l~l~~G~~V~l~ 56 (58)
T PF12857_consen 20 EVRLELKRL-DDGEPIEVELPRERRQLGLQPGDRVYLR 56 (58)
T ss_pred eEEEEEEEC-CCCCEEEEEeCHhHHhcCCCCCCEEEEE
Confidence 345665545 457889999988 67889999999886
No 240
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=35.16 E-value=20 Score=33.87 Aligned_cols=27 Identities=26% Similarity=0.468 Sum_probs=21.6
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEE
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
++-+|++-+|+++|+-|.|.+|++=..
T Consensus 22 ~~vs~~i~~Ge~~~liG~nGsGKSTLl 48 (510)
T PRK09700 22 KSVNLTVYPGEIHALLGENGAGKSTLM 48 (510)
T ss_pred eeeeEEEcCCcEEEEECCCCCCHHHHH
Confidence 335789999999999999998855443
No 241
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=34.80 E-value=21 Score=33.66 Aligned_cols=28 Identities=11% Similarity=0.191 Sum_probs=22.4
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++++-+|++|++-|.|.+|.+=..+-|
T Consensus 279 is~~i~~Ge~~~l~G~NGsGKSTLl~~l 306 (500)
T TIGR02633 279 VSFSLRRGEILGVAGLVGAGRTELVQAL 306 (500)
T ss_pred ceeEEeCCcEEEEeCCCCCCHHHHHHHH
Confidence 4688999999999999999976444433
No 242
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=34.66 E-value=22 Score=31.47 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=21.5
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++=||++|++-|.|.+|..-...
T Consensus 22 ~isl~I~~Ge~~~IvG~nGsGKSTLl~ 48 (275)
T cd03289 22 NISFSISPGQRVGLLGRTGSGKSTLLS 48 (275)
T ss_pred ceEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 356899999999999999988554433
No 243
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=34.65 E-value=21 Score=33.62 Aligned_cols=27 Identities=22% Similarity=0.254 Sum_probs=21.5
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-||+++++-|.|.+|.+-..+
T Consensus 16 ~vs~~i~~Ge~~~liG~nGsGKSTLl~ 42 (491)
T PRK10982 16 NVNLKVRPHSIHALMGENGAGKSTLLK 42 (491)
T ss_pred eeeEEEcCCcEEEEECCCCCCHHHHHH
Confidence 356899999999999999988654333
No 244
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=34.57 E-value=21 Score=32.29 Aligned_cols=35 Identities=17% Similarity=0.184 Sum_probs=27.5
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeecccCC
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIYSDA 140 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p 140 (203)
|++-++++-+|+++++-|.|.+|++-..+-|....
T Consensus 23 l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll 57 (326)
T PRK11022 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLI 57 (326)
T ss_pred EeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 33456999999999999999999877766655443
No 245
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=34.53 E-value=38 Score=27.38 Aligned_cols=23 Identities=9% Similarity=0.104 Sum_probs=19.9
Q ss_pred ChHHHHHHHHhcCCCeEEEeeeh
Q psy145 169 PLADYLVNVFEKSYNSAFITTVA 191 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~~ 191 (203)
-+..+++.+.+.+||.+|+||--
T Consensus 29 ~~~~~~~~~~~~~~d~i~~~GD~ 51 (223)
T cd00840 29 AFEEIVELAIEEKVDFVLIAGDL 51 (223)
T ss_pred HHHHHHHHHHhcCCCEEEECCcc
Confidence 56788999999999999999965
No 246
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=34.11 E-value=67 Score=24.69 Aligned_cols=19 Identities=5% Similarity=-0.027 Sum_probs=9.7
Q ss_pred HHHHHHHHhcCC-CeEEEee
Q psy145 171 ADYLVNVFEKSY-NSAFITT 189 (203)
Q Consensus 171 ~DLL~~v~~~~P-dvLvlt~ 189 (203)
.++++.+++..| ++.++.|
T Consensus 68 ~~~~~~L~~~~~~~i~i~~G 87 (122)
T cd02071 68 PEVIELLRELGAGDILVVGG 87 (122)
T ss_pred HHHHHHHHhcCCCCCEEEEE
Confidence 355555555533 5555555
No 247
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=33.97 E-value=22 Score=29.55 Aligned_cols=24 Identities=17% Similarity=0.228 Sum_probs=19.7
Q ss_pred ceecCCcEEEEEeecCCCCeEEEe
Q psy145 111 VAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 111 ~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+++=||+++++-|.|..|++=..+
T Consensus 20 ~~i~~Ge~~~l~G~nGsGKSTLl~ 43 (177)
T cd03222 20 GVVKEGEVIGIVGPNGTGKTTAVK 43 (177)
T ss_pred cEECCCCEEEEECCCCChHHHHHH
Confidence 788899999999999988654433
No 248
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=33.82 E-value=23 Score=31.00 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=19.2
Q ss_pred CcceecCCcEEEEEeecCCCCe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~ 130 (203)
-++++.+|+.|++-|.|.+|..
T Consensus 23 v~~~i~~Ge~~~i~G~nGsGKS 44 (235)
T COG1122 23 VSLEIEKGERVLLIGPNGSGKS 44 (235)
T ss_pred eEEEECCCCEEEEECCCCCCHH
Confidence 4689999999999999998843
No 249
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=33.80 E-value=23 Score=33.31 Aligned_cols=28 Identities=21% Similarity=0.214 Sum_probs=22.6
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++++-||+++++-|.|.+|.+=..+=|
T Consensus 279 vsl~i~~Ge~~~i~G~NGsGKSTLl~~l 306 (490)
T PRK10938 279 LSWQVNPGEHWQIVGPNGAGKSTLLSLI 306 (490)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 4688999999999999999976554433
No 250
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=33.70 E-value=22 Score=34.98 Aligned_cols=28 Identities=18% Similarity=0.192 Sum_probs=22.7
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-+|++|++-|.|.+|.+=..+
T Consensus 336 ~~vsl~i~~Ge~~~l~G~NGsGKSTLlk 363 (635)
T PRK11147 336 KDFSAQVQRGDKIALIGPNGCGKTTLLK 363 (635)
T ss_pred cCcEEEEcCCCEEEEECCCCCcHHHHHH
Confidence 3357999999999999999999655444
No 251
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=33.38 E-value=22 Score=33.59 Aligned_cols=28 Identities=21% Similarity=0.478 Sum_probs=22.6
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
.+-+|++-+|+++++-|.|.+|++-..+
T Consensus 21 ~~is~~i~~Ge~~~l~G~NGsGKSTLl~ 48 (501)
T PRK10762 21 SGAALNVYPGRVMALVGENGAGKSTMMK 48 (501)
T ss_pred eeeeEEEcCCeEEEEECCCCCCHHHHHH
Confidence 3357899999999999999999764443
No 252
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=33.30 E-value=23 Score=34.03 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=22.3
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++++-+|+++++-|.|.+|.+=..+-|
T Consensus 341 isl~i~~Ge~~~l~G~NGsGKSTLl~~l 368 (552)
T TIGR03719 341 LSFKLPPGGIVGVIGPNGAGKSTLFRMI 368 (552)
T ss_pred ceEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 5689999999999999999865444433
No 253
>PRK13165 cytochrome c-type biogenesis protein CcmE; Reviewed
Probab=32.94 E-value=3e+02 Score=23.19 Aligned_cols=71 Identities=14% Similarity=0.142 Sum_probs=45.9
Q ss_pred ccccEEEEEEEeeCCCCCCCCcc--eeEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccC
Q psy145 64 DTTEITAIGRIVCDTSDGKLNAA--SVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSD 139 (203)
Q Consensus 64 sq~~v~vvGRI~~Ds~egkLn~~--Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~ 139 (203)
....+.+=|.|...| =.+ ++. .+...-.+. ...|+..... -.=.|-.||=|.++|.--.++.|.+++|+.-
T Consensus 56 ~g~~iRvgG~V~~GS-i~r-~~~~l~v~F~vtD~---~~~v~V~Y~GilPDlFrEG~gVVveG~~~~~g~F~A~~vLAK 129 (160)
T PRK13165 56 VGQRLRVGGMVMPGS-VQR-DPNSLKVSFTLYDA---GGSVTVTYEGILPDLFREGQGIVAQGVLEEGNHIEAKEVLAK 129 (160)
T ss_pred CCCEEEEeeEEeCCc-EEE-CCCCeEEEEEEEcC---CeEEEEEEcccCCccccCCCeEEEEEEECCCCeEEEEEEEec
Confidence 456788888888655 111 122 123333221 4566776666 3345567999999999877789999999653
No 254
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=32.34 E-value=24 Score=33.37 Aligned_cols=28 Identities=18% Similarity=0.219 Sum_probs=22.1
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||+++++-|.|.+|++=..+
T Consensus 21 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~ 48 (501)
T PRK11288 21 DDISFDCRAGQVHALMGENGAGKSTLLK 48 (501)
T ss_pred eeeeEEEeCCcEEEEECCCCCCHHHHHH
Confidence 3356899999999999999988654333
No 255
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=32.30 E-value=24 Score=33.56 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=21.7
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-+|+++++-|.|.+|.+-..+
T Consensus 338 is~~i~~Ge~~~l~G~NGsGKSTLl~ 363 (530)
T PRK15064 338 LNLLLEAGERLAIIGENGVGKTTLLR 363 (530)
T ss_pred cEEEECCCCEEEEECCCCCCHHHHHH
Confidence 57999999999999999998654443
No 256
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=32.14 E-value=26 Score=33.35 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=23.3
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
+-++++-+|++||+-|.|.+|.+=..+-|
T Consensus 281 ~isl~i~~Ge~~~l~G~NGsGKSTLl~~i 309 (510)
T PRK15439 281 NISLEVRAGEILGLAGVVGAGRTELAETL 309 (510)
T ss_pred ceeEEEcCCcEEEEECCCCCCHHHHHHHH
Confidence 36789999999999999999976555433
No 257
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=32.00 E-value=27 Score=33.60 Aligned_cols=26 Identities=23% Similarity=0.448 Sum_probs=21.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeE
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQF 131 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~f 131 (203)
|++-++++-+|+++++-|.|.+|.+=
T Consensus 21 l~~is~~i~~Ge~~~liG~NGsGKST 46 (552)
T TIGR03719 21 LKDISLSFFPGAKIGVLGLNGAGKST 46 (552)
T ss_pred ecCceEEECCCCEEEEECCCCCCHHH
Confidence 34457999999999999999988543
No 258
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=31.58 E-value=25 Score=31.40 Aligned_cols=26 Identities=19% Similarity=0.268 Sum_probs=21.4
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||++||+-|.|.+|.+-..+
T Consensus 26 vsl~i~~Ge~v~iiG~nGsGKSTLl~ 51 (305)
T PRK13651 26 VSVEINQGEFIAIIGQTGSGKTTFIE 51 (305)
T ss_pred eEEEEeCCCEEEEECCCCCcHHHHHH
Confidence 46889999999999999988664444
No 259
>PRK11340 phosphodiesterase YaeI; Provisional
Probab=31.46 E-value=44 Score=29.19 Aligned_cols=22 Identities=9% Similarity=0.045 Sum_probs=19.1
Q ss_pred ChHHHHHHHHhcCCCeEEEeee
Q psy145 169 PLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~ 190 (203)
.+..+++.+.+.+||++++||-
T Consensus 68 ~l~~~v~~i~~~~pDlVli~GD 89 (271)
T PRK11340 68 LISDAIALGIEQKPDLILLGGD 89 (271)
T ss_pred HHHHHHHHHHhcCCCEEEEccC
Confidence 3678888889999999999996
No 260
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=31.42 E-value=26 Score=31.91 Aligned_cols=25 Identities=12% Similarity=0.056 Sum_probs=20.8
Q ss_pred cceecCCcEEEEEeecCCCCeEEEe
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++++-||+++++-|.|.+|++-..+
T Consensus 17 sl~i~~Gei~~l~G~nGsGKSTLl~ 41 (354)
T TIGR02142 17 DFTLPGQGVTAIFGRSGSGKTTLIR 41 (354)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHH
Confidence 4889999999999999998665444
No 261
>cd04088 EFG_mtEFG_II EFG_mtEFG_II: this subfamily represents the domain II of elongation factor G (EF-G) in bacteria and, the C-terminus of mitochondrial Elongation factor G1 (mtEFG1) and G2 (mtEFG2)_like proteins found in eukaryotes. During the process of peptide synthesis and tRNA site changes, the ribosome is moved along the mRNA a distance equal to one codon with the addition of each amino acid. In bacteria this translocation step is catalyzed by EF-G_GTP, which is hydrolyzed to provide the required energy. Thus, this action releases the uncharged tRNA from the P site and transfers the newly formed peptidyl-tRNA from the A site to the P site. Eukaryotic cells harbor 2 protein synthesis systems: one localized in the cytoplasm, the other in the mitochondria. Most factors regulating mitochondrial protein synthesis are encoded by nuclear genes, translated in the cytoplasm, and then transported to the mitochondria. The eukaryotic system of elongation factor (EF) components is more compl
Probab=30.55 E-value=51 Score=23.24 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=17.0
Q ss_pred CcceecCCcEEEEEeecC--CCCeE
Q psy145 109 TGVAVFPGQIVAARGSNP--SRNQF 131 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~--~G~~f 131 (203)
+.=++.+|+||++.|... .|+.+
T Consensus 57 ~v~~~~aGdI~~i~g~~~~~~Gdtl 81 (83)
T cd04088 57 EVEEAGAGDIGAVAGLKDTATGDTL 81 (83)
T ss_pred ECCEeCCCCEEEEECCCCCccCCEe
Confidence 446789999999998653 55554
No 262
>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=30.42 E-value=1.2e+02 Score=26.35 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=19.3
Q ss_pred EEEEcC---cChHHHHHHHHhcC--CCeEEEeeeh
Q psy145 162 VSYEKG---LPLADYLVNVFEKS--YNSAFITTVA 191 (203)
Q Consensus 162 i~~A~G---PpL~DLL~~v~~~~--PdvLvlt~~~ 191 (203)
+++|.| +|+..|++++++.. .+|-++.|..
T Consensus 111 lliagGtG~aPl~~i~~~~~~~~~~~~V~~~~G~~ 145 (252)
T COG0543 111 LLIAGGTGIAPLYAIAKELKEKGDANKVTLLYGAR 145 (252)
T ss_pred EEEecccCHhHHHHHHHHHHhcCCCceEEEEEecc
Confidence 555555 57777777777755 6666666643
No 263
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=29.99 E-value=26 Score=32.95 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=22.0
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-||+++++-|.|..|++=..+
T Consensus 21 ~vs~~i~~Geiv~liGpNGaGKSTLLk 47 (402)
T PRK09536 21 GVDLSVREGSLVGLVGPNGAGKTTLLR 47 (402)
T ss_pred eeEEEECCCCEEEEECCCCchHHHHHH
Confidence 356899999999999999988654444
No 264
>PRK05813 single-stranded DNA-binding protein; Provisional
Probab=29.95 E-value=1.1e+02 Score=26.73 Aligned_cols=61 Identities=18% Similarity=0.115 Sum_probs=39.9
Q ss_pred CccccEEEEEEEeeCC-----CCCCCCcceeEEEeeccCCCceEEEeecCC-----CcceecCCcEEEEEeec
Q psy145 63 GDTTEITAIGRIVCDT-----SDGKLNAASVLLEGDEVTSGGRSISLKLPE-----TGVAVFPGQIVAARGSN 125 (203)
Q Consensus 63 ~sq~~v~vvGRI~~Ds-----~egkLn~~Sv~LEgsr~~g~G~rV~Ldls~-----~~~SLFPGQIVavkG~N 125 (203)
.....|+.+|||+.|+ +.|+ .-.++.|..+|..+.-.-+++-.=+ -.+ |-.|+-|+|+|+-
T Consensus 107 ~~~N~V~LiGrL~~DPelR~t~~G~-~va~f~lAvnr~~~~td~i~~v~wg~~Ae~~~~-l~KG~~V~V~GrL 177 (219)
T PRK05813 107 KNPNEIFLDGYICKEPVYRTTPFGR-EIADLLLAVNRPYNKSDYIPCIAWGRNARFCKT-LEVGDNIRVWGRV 177 (219)
T ss_pred CCccEEEEEEEccCCCeEEECCCCC-EEEEEEEEEcCCCCCceEEEEEEEhHHhHHHhh-CCCCCEEEEEEEE
Confidence 5578899999999997 1231 2345667777665433445543211 233 9999999999983
No 265
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=29.91 E-value=28 Score=33.52 Aligned_cols=28 Identities=25% Similarity=0.329 Sum_probs=22.3
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++++-||+++++-|.|.+|.+=..+-|
T Consensus 343 isl~i~~Ge~~~l~G~NGsGKSTLl~~i 370 (556)
T PRK11819 343 LSFSLPPGGIVGIIGPNGAGKSTLFKMI 370 (556)
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHHHH
Confidence 5689999999999999998865444433
No 266
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=29.78 E-value=1e+02 Score=24.99 Aligned_cols=43 Identities=14% Similarity=0.020 Sum_probs=31.9
Q ss_pred eEEEEcCcChHHHHHHH---HhcCCCeEEEeeehhhhcccCCCCCC
Q psy145 161 RVSYEKGLPLADYLVNV---FEKSYNSAFITTVADFHRAGSSGFHE 203 (203)
Q Consensus 161 ~i~~A~GPpL~DLL~~v---~~~~PdvLvlt~~~~~~~~~~~~~~~ 203 (203)
=+++-+||=+.+++.-+ ..++-.+|+|||..+.++.|...|+|
T Consensus 66 v~~~t~GpG~~n~~~~l~~A~~~~~Pvl~I~g~~~~~~~~~~~~q~ 111 (164)
T cd07039 66 VCLGSSGPGAIHLLNGLYDAKRDRAPVLAIAGQVPTDELGTDYFQE 111 (164)
T ss_pred EEEECCCCcHHHHHHHHHHHHhcCCCEEEEecCCcccccCCCCCcc
Confidence 34555689666665444 45788999999999999888777764
No 267
>PHA02546 47 endonuclease subunit; Provisional
Probab=29.62 E-value=48 Score=30.13 Aligned_cols=27 Identities=4% Similarity=-0.116 Sum_probs=23.0
Q ss_pred ChHHHHHHHHhcCCCeEEEeeehhhhcc
Q psy145 169 PLADYLVNVFEKSYNSAFITTVADFHRA 196 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~~~~~~~ 196 (203)
.+..+++++++++||.+|++|-. ||+.
T Consensus 27 ~l~~ii~~a~~~~vD~VliaGDl-fD~~ 53 (340)
T PHA02546 27 FIKQAIEYSKAHGITTWIQLGDT-FDVR 53 (340)
T ss_pred HHHHHHHHHHHcCCCEEEECCcc-cCCC
Confidence 57899999999999999999976 5553
No 268
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=29.56 E-value=29 Score=34.31 Aligned_cols=28 Identities=14% Similarity=0.275 Sum_probs=22.1
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-+|++.||++||+-|.|.+|.+-..+
T Consensus 329 ~~isl~i~~Ge~~~l~G~NGsGKSTLlk 356 (638)
T PRK10636 329 DSIKLNLVPGSRIGLLGRNGAGKSTLIK 356 (638)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 3356899999999999999988654443
No 269
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=29.46 E-value=28 Score=33.00 Aligned_cols=28 Identities=21% Similarity=0.311 Sum_probs=22.5
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-+|+++++-|.|.+|++=..+
T Consensus 22 ~~isl~i~~Ge~~~l~G~nGsGKSTLl~ 49 (506)
T PRK13549 22 DNVSLKVRAGEIVSLCGENGAGKSTLMK 49 (506)
T ss_pred cceeEEEeCCeEEEEECCCCCCHHHHHH
Confidence 3357899999999999999999764444
No 270
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=29.37 E-value=65 Score=23.77 Aligned_cols=21 Identities=5% Similarity=-0.043 Sum_probs=19.1
Q ss_pred hHHHHHHHHhcCCCeEEEeee
Q psy145 170 LADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 170 L~DLL~~v~~~~PdvLvlt~~ 190 (203)
..++.+++.+.+||++.+|+.
T Consensus 40 ~~~l~~~~~~~~pd~V~iS~~ 60 (121)
T PF02310_consen 40 PEELVEALRAERPDVVGISVS 60 (121)
T ss_dssp HHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHhcCCCcEEEEEcc
Confidence 489999999999999999883
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=29.18 E-value=31 Score=32.68 Aligned_cols=29 Identities=10% Similarity=0.205 Sum_probs=23.7
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
-++++-+|++||+-|.|.+|.+=..+-|.
T Consensus 281 vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~ 309 (506)
T PRK13549 281 VSFSLRRGEILGIAGLVGAGRTELVQCLF 309 (506)
T ss_pred eeeEEcCCcEEEEeCCCCCCHHHHHHHHh
Confidence 46899999999999999999775555444
No 272
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=28.86 E-value=69 Score=26.11 Aligned_cols=79 Identities=14% Similarity=0.150 Sum_probs=44.4
Q ss_pred eecCCcEEEEEeecCCCCeEEEeecccCCCCCCCCCcccccccc-----ccccceEEEEcC-------cChHHHHHHHHh
Q psy145 112 AVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNT-----EMYKLRVSYEKG-------LPLADYLVNVFE 179 (203)
Q Consensus 112 SLFPGQIVavkG~N~~G~~fvV~eI~~~p~lp~p~s~~~~~~~~-----~~~~l~i~~A~G-------PpL~DLL~~v~~ 179 (203)
.+=+|+++++-|.|.+|++=...-|....+.. ......+... ......+.+... -...++++.+..
T Consensus 21 ~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~--~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR 98 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLAFIPPD--ERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALR 98 (186)
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhcCCC--CCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhc
Confidence 44578899999999998765555444433211 1110011000 111233333211 135799999999
Q ss_pred cCCCeEEEeeehh
Q psy145 180 KSYNSAFITTVAD 192 (203)
Q Consensus 180 ~~PdvLvlt~~~~ 192 (203)
..||++++.-+.|
T Consensus 99 ~~pd~i~igEir~ 111 (186)
T cd01130 99 MRPDRIIVGEVRG 111 (186)
T ss_pred cCCCEEEEEccCc
Confidence 9999999985543
No 273
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=28.85 E-value=28 Score=31.56 Aligned_cols=34 Identities=12% Similarity=0.109 Sum_probs=27.0
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeecccCC
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKIYSDA 140 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p 140 (203)
++-++++-+|+++++-|-|.+|++-.++-|....
T Consensus 33 ~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 33 NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred eeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 3357899999999999999999877776555443
No 274
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=28.78 E-value=31 Score=31.35 Aligned_cols=33 Identities=12% Similarity=0.258 Sum_probs=25.8
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEeeccc
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIATKIYS 138 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~~ 138 (203)
+++-++++-+|++||+-|-|.+|++-..+=|..
T Consensus 37 l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~G 69 (331)
T PRK15079 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIG 69 (331)
T ss_pred EeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHC
Confidence 334578999999999999999997766665543
No 275
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=28.22 E-value=31 Score=31.74 Aligned_cols=26 Identities=12% Similarity=0.268 Sum_probs=20.9
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEE
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
+-++++-+|+++++-|.|.+|++-..
T Consensus 21 ~vsl~i~~Ge~~~l~G~nGsGKSTLL 46 (369)
T PRK11000 21 DINLDIHEGEFVVFVGPSGCGKSTLL 46 (369)
T ss_pred eeEEEEcCCCEEEEECCCCCcHHHHH
Confidence 35689999999999999998855333
No 276
>PRK10116 universal stress protein UspC; Provisional
Probab=27.99 E-value=94 Score=23.34 Aligned_cols=31 Identities=6% Similarity=-0.059 Sum_probs=26.9
Q ss_pred ceEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 160 LRVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 160 l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
..+++..|.+-..+++++.+..+|.+|+.+.
T Consensus 81 ~~~~~~~G~~~~~I~~~a~~~~~DLiV~g~~ 111 (142)
T PRK10116 81 EKTFIAYGELSEHILEVCRKHHFDLVICGNH 111 (142)
T ss_pred EEEEEecCCHHHHHHHHHHHhCCCEEEEcCC
Confidence 3577888999999999999999999998665
No 277
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=27.63 E-value=33 Score=32.04 Aligned_cols=97 Identities=12% Similarity=0.167 Sum_probs=59.0
Q ss_pred eEEEeecCC----CcceecCCcEEEEEeecCCCCeEEEeecccCC-C-------CCCCCCccccc---cccccccceEEE
Q psy145 100 RSISLKLPE----TGVAVFPGQIVAARGSNPSRNQFIATKIYSDA-S-------LPLSETRPALD---QNTEMYKLRVSY 164 (203)
Q Consensus 100 ~rV~Ldls~----~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p-~-------lp~p~s~~~~~---~~~~~~~l~i~~ 164 (203)
.|++--+.. -+-.+.||.++.+-|....|++..+.++...- . .....+..+.. ........++++
T Consensus 62 ~ri~TGi~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l 141 (372)
T cd01121 62 ERIPTGIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYL 141 (372)
T ss_pred CccccCCHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEE
Confidence 455554444 34589999999999999889877666553211 0 00000111100 011222345555
Q ss_pred EcCcChHHHHHHHHhcCCCeEEEeeehhhhcc
Q psy145 165 EKGLPLADYLVNVFEKSYNSAFITTVADFHRA 196 (203)
Q Consensus 165 A~GPpL~DLL~~v~~~~PdvLvlt~~~~~~~~ 196 (203)
.+...+.++++.+.+.+|+++||=....+++.
T Consensus 142 ~~e~~le~I~~~i~~~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 142 LAETNLEDILASIEELKPDLVIIDSIQTVYSS 173 (372)
T ss_pred EccCcHHHHHHHHHhcCCcEEEEcchHHhhcc
Confidence 55556789999999999999999887666543
No 278
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=27.48 E-value=32 Score=32.77 Aligned_cols=31 Identities=19% Similarity=0.278 Sum_probs=24.4
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEeeccc
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIATKIYS 138 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~eI~~ 138 (203)
+-++++-+|+++|+-|.|.+|++-..+=|..
T Consensus 27 ~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G 57 (529)
T PRK15134 27 DVSLQIEAGETLALVGESGSGKSVTALSILR 57 (529)
T ss_pred ceEEEEeCCCEEEEECCCCCcHHHHHHHHhc
Confidence 3568999999999999999997665554433
No 279
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=27.42 E-value=32 Score=32.21 Aligned_cols=26 Identities=15% Similarity=0.198 Sum_probs=21.0
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-+|++-+|+|+++-|.|.+|.+=..+
T Consensus 43 vsf~i~~Gei~~I~G~nGsGKSTLlr 68 (382)
T TIGR03415 43 ASLDIEEGEICVLMGLSGSGKSSLLR 68 (382)
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHH
Confidence 46899999999999999988654333
No 280
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=26.88 E-value=34 Score=32.53 Aligned_cols=24 Identities=17% Similarity=0.300 Sum_probs=20.1
Q ss_pred CcceecCCcEEEEEeecCCCCeEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fv 132 (203)
-++++-+|+++++-|.|.+|++=.
T Consensus 30 vsl~i~~Ge~~~liG~NGsGKSTL 53 (510)
T PRK15439 30 IDFTLHAGEVHALLGGNGAGKSTL 53 (510)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHH
Confidence 568899999999999999885433
No 281
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=26.76 E-value=36 Score=28.84 Aligned_cols=24 Identities=17% Similarity=0.223 Sum_probs=20.6
Q ss_pred CcceecCCcEEEEEeecCCCCeEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fv 132 (203)
-++++=+|++||+-|.|.+|.+-.
T Consensus 14 vsl~i~~Ge~~~l~G~sGsGKSTL 37 (226)
T cd03270 14 VDVDIPRNKLVVITGVSGSGKSSL 37 (226)
T ss_pred ceeecCCCcEEEEEcCCCCCHHHH
Confidence 568899999999999999986544
No 282
>PF04023 FeoA: FeoA domain; InterPro: IPR007167 This entry represents the core domain of the ferrous iron (Fe2+) transport protein FeoA found in bacteria. This domain also occurs at the C terminus in related proteins. The transporter Feo is composed of three proteins: FeoA a small, soluble SH3-domain protein probably located in the cytosol; FeoB, a large protein with a cytosolic N-terminal G-protein domain and a C-terminal integral inner-membrane domain containing two 'Gate' motifs which likely functions as the Fe2+ permease; and FeoC, a small protein apparently functioning as an [Fe-S]-dependent transcriptional repressor [, ]. Feo allows the bacterial cell to acquire iron from its environment. ; GO: 0005506 iron ion binding; PDB: 3HRT_B 3HRS_A 3HRU_B 1G3T_A 1C0W_B 1BI3_A 1QVP_A 1BI1_A 1BYM_A 2QQB_A ....
Probab=26.67 E-value=77 Score=21.79 Aligned_cols=27 Identities=15% Similarity=0.290 Sum_probs=22.9
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEee
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATK 135 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~e 135 (203)
.+..|.||+-|-+.-+++.|+.++++-
T Consensus 29 ~~lGl~~G~~i~v~~~~~~~~~~~i~~ 55 (74)
T PF04023_consen 29 ADLGLTPGSEITVIRKNPFGGPVVIKV 55 (74)
T ss_dssp HHCT-STTEEEEEEEEETTSSEEEEEE
T ss_pred HHCCCCCCCEEEEEEeCCCCCCEEEEE
Confidence 678999999999999999888888873
No 283
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=26.58 E-value=60 Score=29.75 Aligned_cols=24 Identities=8% Similarity=0.014 Sum_probs=21.2
Q ss_pred HHHHHHHHhcCCCeEEEeeehhhh
Q psy145 171 ADYLVNVFEKSYNSAFITTVADFH 194 (203)
Q Consensus 171 ~DLL~~v~~~~PdvLvlt~~~~~~ 194 (203)
..+.+.+++.+||++|.+|-.+|+
T Consensus 79 ~~~~~~l~~~kPd~vi~~g~~~~~ 102 (385)
T TIGR00215 79 KEVVQLAKQAKPDLLVGIDAPDFN 102 (385)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcc
Confidence 477788999999999999988887
No 284
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=26.54 E-value=35 Score=31.05 Aligned_cols=25 Identities=12% Similarity=0.106 Sum_probs=20.4
Q ss_pred cceecCCcEEEEEeecCCCCeEEEe
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++++-+|+++++-|.|.+|++-..+
T Consensus 18 sl~i~~Ge~~~l~G~nGsGKSTLl~ 42 (352)
T PRK11144 18 NLTLPAQGITAIFGRSGAGKTSLIN 42 (352)
T ss_pred EEEEcCCCEEEEECCCCCCHHHHHH
Confidence 5888999999999999988654433
No 285
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=26.49 E-value=35 Score=31.30 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=22.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-||+++++-|.|..|++-.++
T Consensus 21 L~~vsl~i~~Gei~gIiG~sGaGKSTLlr 49 (343)
T TIGR02314 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIR 49 (343)
T ss_pred EeeeEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 33456899999999999999988654443
No 286
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=26.46 E-value=36 Score=31.26 Aligned_cols=26 Identities=23% Similarity=0.293 Sum_probs=21.1
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-+|+++++-|.|.+|++-..+
T Consensus 21 isl~i~~Ge~~~llGpsGsGKSTLLr 46 (353)
T PRK10851 21 ISLDIPSGQMVALLGPSGSGKTTLLR 46 (353)
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 46888999999999999988664444
No 287
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=26.03 E-value=36 Score=32.25 Aligned_cols=27 Identities=7% Similarity=0.242 Sum_probs=21.8
Q ss_pred CCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 108 ETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 108 ~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
+-++++-+|++|++-|.|.+|++=..+
T Consensus 18 ~is~~i~~Ge~~~iiG~nGsGKSTLl~ 44 (520)
T TIGR03269 18 NISFTIEEGEVLGILGRSGAGKSVLMH 44 (520)
T ss_pred ceeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 356899999999999999999654433
No 288
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=25.76 E-value=37 Score=32.13 Aligned_cols=28 Identities=11% Similarity=0.170 Sum_probs=22.7
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++++-||+++++-|.|.+|++=..+-|
T Consensus 271 vsl~i~~Ge~~~liG~NGsGKSTLl~~l 298 (501)
T PRK10762 271 VSFTLRKGEILGVSGLMGAGRTELMKVL 298 (501)
T ss_pred ceEEEcCCcEEEEecCCCCCHHHHHHHH
Confidence 6789999999999999999866544433
No 289
>PRK10966 exonuclease subunit SbcD; Provisional
Probab=25.73 E-value=59 Score=30.59 Aligned_cols=26 Identities=19% Similarity=0.146 Sum_probs=21.4
Q ss_pred ChHHHHHHHHhcCCCeEEEeeehhhhc
Q psy145 169 PLADYLVNVFEKSYNSAFITTVADFHR 195 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~~~~~~ 195 (203)
.+..|++++.+++||.+||||-- ||+
T Consensus 27 ~l~~l~~~i~~~~~D~viIaGDi-fD~ 52 (407)
T PRK10966 27 FLDWLLEQVQEHQVDAIIVAGDI-FDT 52 (407)
T ss_pred HHHHHHHHHHhcCCCEEEECCcc-ccC
Confidence 46778999999999999999965 444
No 290
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=25.48 E-value=52 Score=29.52 Aligned_cols=27 Identities=26% Similarity=0.266 Sum_probs=21.3
Q ss_pred cceecCCcEEEEEeecCCCCeEEEeec
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++++-+|+||++-|-|..|.+-..--|
T Consensus 24 sl~v~~GEiVGLLGPNGAGKTT~Fymi 50 (243)
T COG1137 24 SLEVNSGEIVGLLGPNGAGKTTTFYMI 50 (243)
T ss_pred eEEEcCCcEEEEECCCCCCceeEEEEE
Confidence 578899999999999999976443333
No 291
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=25.09 E-value=38 Score=31.99 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=21.5
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++=||+++|+-|.|.+|.+=..+
T Consensus 272 isl~i~~Ge~~~iiG~NGsGKSTLlk 297 (501)
T PRK11288 272 ISFSVRAGEIVGLFGLVGAGRSELMK 297 (501)
T ss_pred eeEEEeCCcEEEEEcCCCCCHHHHHH
Confidence 56899999999999999998654433
No 292
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=24.97 E-value=40 Score=30.39 Aligned_cols=34 Identities=21% Similarity=0.266 Sum_probs=26.9
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEeecccCC
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIATKIYSDA 140 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p 140 (203)
++-++++-+|+++++-|-|.+|++-..+-|....
T Consensus 24 ~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 24 DRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred eeeEEEECCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 3356889999999999999999887666555443
No 293
>COG1535 EntB Isochorismate hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.90 E-value=58 Score=28.66 Aligned_cols=21 Identities=29% Similarity=0.216 Sum_probs=19.5
Q ss_pred HHHHHHHHhcCCCeEEEeeeh
Q psy145 171 ADYLVNVFEKSYNSAFITTVA 191 (203)
Q Consensus 171 ~DLL~~v~~~~PdvLvlt~~~ 191 (203)
.+||+..++...|=||||||-
T Consensus 132 s~Llq~lr~~grdQLIItGVy 152 (218)
T COG1535 132 SPLLQMLREKGRDQLIITGVY 152 (218)
T ss_pred ChHHHHHHHcCCCcEEEeehh
Confidence 499999999999999999984
No 294
>PRK09982 universal stress protein UspD; Provisional
Probab=24.88 E-value=1.1e+02 Score=23.45 Aligned_cols=30 Identities=13% Similarity=0.092 Sum_probs=26.2
Q ss_pred cceEEEEcCcChHHHHHHHHhcCCCeEEEe
Q psy145 159 KLRVSYEKGLPLADYLVNVFEKSYNSAFIT 188 (203)
Q Consensus 159 ~l~i~~A~GPpL~DLL~~v~~~~PdvLvlt 188 (203)
.....+..|.|-..+++++.+...|.+|+-
T Consensus 81 ~~~~~v~~G~p~~~I~~~A~~~~aDLIVmG 110 (142)
T PRK09982 81 KTKLRIERGEMPETLLEIMQKEQCDLLVCG 110 (142)
T ss_pred cceEEEEecCHHHHHHHHHHHcCCCEEEEe
Confidence 467788889999999999999999988774
No 295
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=24.21 E-value=43 Score=31.52 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=21.2
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++.+-+|++|++-|.|.+|.+=..+
T Consensus 267 vsl~i~~Ge~~~l~G~nGsGKSTLl~ 292 (491)
T PRK10982 267 VSFDLHKGEILGIAGLVGAKRTDIVE 292 (491)
T ss_pred eeEEEeCCcEEEEecCCCCCHHHHHH
Confidence 46889999999999999988654433
No 296
>PF00582 Usp: Universal stress protein family; InterPro: IPR006016 The universal stress protein UspA P28242 from SWISSPROT [] is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA [] reveals an alpha/beta fold similar to that of the Methanocaldococcus jannaschii (Methanococcus jannaschii) MJ0577 protein, which binds ATP [], though UspA lacks ATP-binding activity.; GO: 0006950 response to stress; PDB: 3DLO_C 3QTB_A 2PFS_A 3TNJ_A 1JMV_D 3FH0_B 3FDX_B 3AB7_A 3AB8_A 2GM3_F ....
Probab=24.03 E-value=1.3e+02 Score=21.27 Aligned_cols=34 Identities=12% Similarity=0.024 Sum_probs=29.5
Q ss_pred ccceEEEEcCcChHHHHHHHHhcCCCeEEEeeeh
Q psy145 158 YKLRVSYEKGLPLADYLVNVFEKSYNSAFITTVA 191 (203)
Q Consensus 158 ~~l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~~ 191 (203)
......+..|.+...+++++.+..+|.+|+-...
T Consensus 79 ~~~~~~~~~~~~~~~i~~~~~~~~~dliv~G~~~ 112 (140)
T PF00582_consen 79 IVIEVVIESGDVADAIIEFAEEHNADLIVMGSRG 112 (140)
T ss_dssp SEEEEEEEESSHHHHHHHHHHHTTCSEEEEESSS
T ss_pred ceeEEEEEeeccchhhhhccccccceeEEEeccC
Confidence 4567788889999999999999999999987765
No 297
>TIGR00583 mre11 DNA repair protein (mre11). All proteins in this family for which functions are known are subunits of a nuclease complex made up of multiple proteins including MRE11 and RAD50 homologs. The functions of this nuclease complex include recombinational repair and non-homolgous end joining. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). The proteins in this family are distantly related to proteins in the SbcCD complex of bacteria.
Probab=23.99 E-value=67 Score=30.51 Aligned_cols=26 Identities=15% Similarity=0.209 Sum_probs=21.9
Q ss_pred hHHHHHHHHhcCCCeEEEeeehhhhcc
Q psy145 170 LADYLVNVFEKSYNSAFITTVADFHRA 196 (203)
Q Consensus 170 L~DLL~~v~~~~PdvLvlt~~~~~~~~ 196 (203)
+.+++++++++++|.+||+|-- ||+.
T Consensus 31 f~eil~~a~~~~vD~VLiaGDL-Fd~~ 56 (405)
T TIGR00583 31 FEEVLQIAKEQDVDMILLGGDL-FHEN 56 (405)
T ss_pred HHHHHHHHHHcCCCEEEECCcc-CCCC
Confidence 7899999999999999999953 4443
No 298
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=23.55 E-value=43 Score=33.35 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=20.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~ 130 (203)
|++-++++-||+++++-|.|.+|.+
T Consensus 40 L~nVSfsI~~GEivgIiGpNGSGKS 64 (549)
T PRK13545 40 LNNISFEVPEGEIVGIIGLNGSGKS 64 (549)
T ss_pred EeeeEEEEeCCCEEEEEcCCCCCHH
Confidence 3345689999999999999988754
No 299
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=23.16 E-value=44 Score=32.85 Aligned_cols=30 Identities=13% Similarity=0.319 Sum_probs=24.4
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeeccc
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKIYS 138 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI~~ 138 (203)
-++++-+|+++++-|.|.+|++-..+-|..
T Consensus 343 vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~G 372 (623)
T PRK10261 343 VSFDLWPGETLSLVGESGSGKSTTGRALLR 372 (623)
T ss_pred eEeEEcCCCEEEEECCCCCCHHHHHHHHHc
Confidence 578999999999999999997766654443
No 300
>TIGR01110 mdcA malonate decarboxylase, alpha subunit. This model describes malonate decarboxylase alpha subunit, from both the water-soluble form as found in Klebsiella pneumoniae and the form couple to sodium ion pumping in Malonomonas rubra. Malonate decarboxylase Na+ pump is the paradigm of the family of Na+ transport decarboxylases. Essentially, it couples the energy derived from decarboxylation of a carboxylic acid substrate to move Na+ ion across the bilayer. Functional malonate decarboylase is a multi subunit protein. The alpha subunit enzymatically performs the transfer of malonate (substrate) to an acyl carrier protein subunit for subsequent decarboxylation, hence the name: acetyl-S-acyl carrier protein:malonate carrier protein-SH transferase.
Probab=23.08 E-value=45 Score=33.23 Aligned_cols=84 Identities=20% Similarity=0.225 Sum_probs=44.8
Q ss_pred ceecCCcEEEEEeecCCCCeEEEe---ec-----ccCCCCCCCCCcccccc--cccc-ccceEEEEcCc-----------
Q psy145 111 VAVFPGQIVAARGSNPSRNQFIAT---KI-----YSDASLPLSETRPALDQ--NTEM-YKLRVSYEKGL----------- 168 (203)
Q Consensus 111 ~SLFPGQIVavkG~N~~G~~fvV~---eI-----~~~p~lp~p~s~~~~~~--~~~~-~~l~i~~A~GP----------- 168 (203)
--+=||..||++|.|-.---|.+. ++ ..+-..-.+.+.++-+. ..+. .+++.-|+.|+
T Consensus 36 ~~i~~Gdrv~leg~~q~~a~~l~~~l~~~~~~~~~dLh~v~~~~~~~~~~~l~~~G~a~kl~fs~~g~~~~R~~~av~~G 115 (543)
T TIGR01110 36 AVIAPGDRVVLEGNNQKQADFLSRCLASCDPEKINDLHMVQSSVPLPEHLDLFEKGIARKLDFSFAGPQSLRIAQLLEDG 115 (543)
T ss_pred HhCCCCCEEEECCccccchHHHHhhHHhhCccccCCcEEEEecCCchhHHHHHhcCceeeEEEeecCcchHHHHHHHHcC
Confidence 346699999999988654444444 22 11111222222222111 1122 24555444331
Q ss_pred ---------ChHHHHHHHHhcCCCeEEEeee-hhhh
Q psy145 169 ---------PLADYLVNVFEKSYNSAFITTV-ADFH 194 (203)
Q Consensus 169 ---------pL~DLL~~v~~~~PdvLvlt~~-~~~~ 194 (203)
++.+.=++.+.-+|||.+|+.. +|-|
T Consensus 116 ~id~iPih~~lse~pRlf~~L~pDVALI~aSpAD~~ 151 (543)
T TIGR01110 116 KLEIGAIHTYLELYSRYFVDLTPNVSLIAAYEADRD 151 (543)
T ss_pred CeeEeehhchHhhhhhhhhccCCcEEEEECCcCCCC
Confidence 3355556666889999999864 5643
No 301
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=22.98 E-value=22 Score=28.70 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=28.5
Q ss_pred eecCCcEEEEEeecCCCCeEEEeecccCCCCCCCCCccc
Q psy145 112 AVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPA 150 (203)
Q Consensus 112 SLFPGQIVavkG~N~~G~~fvV~eI~~~p~lp~p~s~~~ 150 (203)
.|.||.+|++.|....|++-.++.+...-..+-..+.|.
T Consensus 18 ~l~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPT 56 (133)
T TIGR00150 18 PLDFGTVVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPT 56 (133)
T ss_pred hCCCCCEEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCC
Confidence 367999999999999999988888866544333343443
No 302
>cd03770 SR_TndX_transposase Serine Recombinase (SR) family, TndX-like transposase subfamily, catalytic domain; composed of large serine recombinases similar to Clostridium TndX and TnpX transposases. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. TndX mediates the excision and circularization of the conjugative transposon Tn5397 from Clostridium difficile. TnpX is responsible for the movement of the nonconjugative chloramphenicol resistance elements of the Tn4451/3 family. Mobile genetic elements such as transposons are important vehicles for the transmission of virulence and antibiotic resistance in many microorganisms.
Probab=22.89 E-value=75 Score=24.93 Aligned_cols=28 Identities=4% Similarity=0.125 Sum_probs=22.1
Q ss_pred cChHHHHHHHHhcCCCeEEEeeehhhhc
Q psy145 168 LPLADYLVNVFEKSYNSAFITTVADFHR 195 (203)
Q Consensus 168 PpL~DLL~~v~~~~PdvLvlt~~~~~~~ 195 (203)
|-+..||++++..+.|+||++-..-|.|
T Consensus 55 p~l~~ll~~~~~g~vd~vvv~~ldRl~R 82 (140)
T cd03770 55 PGFNRMIEDIEAGKIDIVIVKDMSRLGR 82 (140)
T ss_pred HHHHHHHHHHHcCCCCEEEEeccchhcc
Confidence 7888999999999999999876544433
No 303
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=22.79 E-value=1.2e+02 Score=25.39 Aligned_cols=24 Identities=8% Similarity=0.004 Sum_probs=15.3
Q ss_pred ChHHHHHHHHhcCCCeEEEeeehh
Q psy145 169 PLADYLVNVFEKSYNSAFITTVAD 192 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~~~ 192 (203)
|..++++.+.+.+||++.|+....
T Consensus 123 p~e~~v~~~~~~~pd~v~lS~~~~ 146 (197)
T TIGR02370 123 PIDTVVEKVKKEKPLMLTGSALMT 146 (197)
T ss_pred CHHHHHHHHHHcCCCEEEEccccc
Confidence 666666666666666666665433
No 304
>COG2163 RPL14A Ribosomal protein L14E/L6E/L27E [Translation, ribosomal structure and biogenesis]
Probab=22.70 E-value=81 Score=25.57 Aligned_cols=25 Identities=20% Similarity=0.323 Sum_probs=18.2
Q ss_pred eecCCcEEE-EEeecCCCCeEEEeec
Q psy145 112 AVFPGQIVA-ARGSNPSRNQFIATKI 136 (203)
Q Consensus 112 SLFPGQIVa-vkG~N~~G~~fvV~eI 136 (203)
+|-||+||. .+|++.+....+|+-|
T Consensus 4 ~l~~GrVvvv~~GR~aGkk~VIv~~i 29 (125)
T COG2163 4 SLEVGRVVVVTAGRFAGKKVVIVKII 29 (125)
T ss_pred cccCCeEEEEecceeCCceEEEEEEc
Confidence 577999987 6899976655555544
No 305
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=22.48 E-value=52 Score=29.49 Aligned_cols=32 Identities=25% Similarity=0.259 Sum_probs=25.1
Q ss_pred cceecCCcEEEEEeecCCCCeEEEeecccCCC
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIATKIYSDAS 141 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p~ 141 (203)
++++=+|+||++-|.|..|++=..+-|.-..+
T Consensus 23 sl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~ 54 (237)
T COG0410 23 SLEVERGEIVALLGRNGAGKTTLLKTIMGLVR 54 (237)
T ss_pred eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57788999999999999998766665654443
No 306
>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins. Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.
Probab=22.47 E-value=3.3e+02 Score=22.36 Aligned_cols=18 Identities=22% Similarity=0.429 Sum_probs=14.1
Q ss_pred ecCCcEEEEEeecCCCCeEE
Q psy145 113 VFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 113 LFPGQIVavkG~N~~G~~fv 132 (203)
+=||+.|.++| |.|+.+.
T Consensus 76 l~~G~~v~i~g--P~G~~~~ 93 (224)
T cd06189 76 LKENGLVRIEG--PLGDFFL 93 (224)
T ss_pred ccCCCEEEEec--CCccEEe
Confidence 66899999998 7776654
No 307
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=22.17 E-value=45 Score=32.75 Aligned_cols=29 Identities=17% Similarity=0.218 Sum_probs=23.3
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
-+|++-+|+++|+-|.|.+|++-...=|.
T Consensus 35 is~~v~~Ge~~~lvG~nGsGKSTLl~~l~ 63 (623)
T PRK10261 35 LSFSLQRGETLAIVGESGSGKSVTALALM 63 (623)
T ss_pred eEEEECCCCEEEEECCCCChHHHHHHHHH
Confidence 56899999999999999998765555443
No 308
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=21.97 E-value=58 Score=26.80 Aligned_cols=27 Identities=15% Similarity=0.236 Sum_probs=21.3
Q ss_pred cceecCCcEEEEEeecCCCCeEEEeec
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++++-+|+++++-|.|.+|++-..+-|
T Consensus 23 ~~~l~~~~~~~l~G~Ng~GKStll~~i 49 (202)
T cd03243 23 DINLGSGRLLLITGPNMGGKSTYLRSI 49 (202)
T ss_pred eEEEcCCeEEEEECCCCCccHHHHHHH
Confidence 467778999999999999976555544
No 309
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=21.69 E-value=52 Score=29.79 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=18.8
Q ss_pred CcceecCCcEEEEEeecCCCCe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~ 130 (203)
-++.+-||.++|+-|-|..|+.
T Consensus 20 vsl~~~pGev~ailGPNGAGKS 41 (259)
T COG4559 20 VSLDLRPGEVLAILGPNGAGKS 41 (259)
T ss_pred cceeccCCcEEEEECCCCccHH
Confidence 4577899999999999998854
No 310
>PRK13409 putative ATPase RIL; Provisional
Probab=21.68 E-value=50 Score=32.52 Aligned_cols=22 Identities=18% Similarity=0.460 Sum_probs=18.7
Q ss_pred CcceecCCcEEEEEeecCCCCe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~ 130 (203)
-++++-+|++|++-|.|.+|.+
T Consensus 358 ~s~~i~~Geiv~l~G~NGsGKS 379 (590)
T PRK13409 358 EGGEIYEGEVIGIVGPNGIGKT 379 (590)
T ss_pred cceEECCCCEEEEECCCCCCHH
Confidence 4577899999999999998854
No 311
>PRK15456 universal stress protein UspG; Provisional
Probab=21.57 E-value=1.5e+02 Score=22.51 Aligned_cols=32 Identities=9% Similarity=-0.038 Sum_probs=27.0
Q ss_pred cceEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 159 KLRVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 159 ~l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
+.+..+..|.|-.++++++.++..|.+|+-+.
T Consensus 83 ~v~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~ 114 (142)
T PRK15456 83 RIKQHVRFGSVRDEVNELAEELGADVVVIGSR 114 (142)
T ss_pred ceEEEEcCCChHHHHHHHHhhcCCCEEEEcCC
Confidence 45777888999999999999999998888543
No 312
>cd01829 SGNH_hydrolase_peri2 SGNH_peri2; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=21.57 E-value=93 Score=24.76 Aligned_cols=26 Identities=8% Similarity=-0.033 Sum_probs=20.8
Q ss_pred hHHHHHHHHhcCCCeEEEe-eehhhhc
Q psy145 170 LADYLVNVFEKSYNSAFIT-TVADFHR 195 (203)
Q Consensus 170 L~DLL~~v~~~~PdvLvlt-~~~~~~~ 195 (203)
+..+.+.|.+.+||++||+ |..|..+
T Consensus 48 ~~~~~~~l~~~~pd~vii~~G~ND~~~ 74 (200)
T cd01829 48 PEKLKELIAEEKPDVVVVFLGANDRQD 74 (200)
T ss_pred HHHHHHHHhcCCCCEEEEEecCCCCcc
Confidence 4567778899999999999 7778653
No 313
>cd00338 Ser_Recombinase Serine Recombinase family, catalytic domain; a DNA binding domain may be present either N- or C-terminal to the catalytic domain. These enzymes perform site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and serine recombinase. Serine recombinases demonstrate functional versatility and include resolvases, invertases, integrases, and transposases. Resolvases and invertases (i.e. Tn3, gamma-delta, Tn5044 resolvases, Gin and Hin invertases) in this family contain a C-terminal DNA binding domain and comprise a major phylogenic group. Also included are phage- and bacterial-encoded recombinases such as phiC31 integrase, SpoIVCA excisionase, and Tn4451 TnpX transposase. These integrases and transposases have larger C-terminal domains compared to resolvases/invertases and are referred to as large serine recombinases. Also belonging to this family are protei
Probab=21.53 E-value=88 Score=23.46 Aligned_cols=28 Identities=14% Similarity=0.221 Sum_probs=21.9
Q ss_pred cChHHHHHHHHhcCCCeEEEeeehhhhc
Q psy145 168 LPLADYLVNVFEKSYNSAFITTVADFHR 195 (203)
Q Consensus 168 PpL~DLL~~v~~~~PdvLvlt~~~~~~~ 195 (203)
|-+..||+.+...+.|+||++-..-|-|
T Consensus 52 ~~~~~ll~~~~~~~~d~ivv~~~~Rl~R 79 (137)
T cd00338 52 PGLQRLLADVKAGKIDVVLVEKLDRLSR 79 (137)
T ss_pred HHHHHHHHHHHcCCCCEEEEEecchhhC
Confidence 5678899999888899998887665544
No 314
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=21.49 E-value=80 Score=29.17 Aligned_cols=35 Identities=17% Similarity=0.116 Sum_probs=27.5
Q ss_pred ccceEEEEc---CcChHHHHHHHHhcCCCeEEEeeehh
Q psy145 158 YKLRVSYEK---GLPLADYLVNVFEKSYNSAFITTVAD 192 (203)
Q Consensus 158 ~~l~i~~A~---GPpL~DLL~~v~~~~PdvLvlt~~~~ 192 (203)
....|++|+ ||.-.+-|++.++.+|||+|+-|--.
T Consensus 175 g~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpt 212 (304)
T COG2248 175 GKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPT 212 (304)
T ss_pred CCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCch
Confidence 456677776 57888888888999999999888665
No 315
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=21.45 E-value=49 Score=28.81 Aligned_cols=18 Identities=22% Similarity=0.250 Sum_probs=15.3
Q ss_pred ecCCcEEEEEeecCCCCe
Q psy145 113 VFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 113 LFPGQIVavkG~N~~G~~ 130 (203)
+-||+++++-|.|..|+.
T Consensus 23 i~~Ge~~~IvG~nGsGKS 40 (255)
T cd03236 23 PREGQVLGLVGPNGIGKS 40 (255)
T ss_pred CCCCCEEEEECCCCCCHH
Confidence 569999999999987754
No 316
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=21.21 E-value=52 Score=31.23 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=20.8
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-+|+++++-|.|.+|.+=..+
T Consensus 303 is~~i~~Ge~~~l~G~NGsGKSTLl~ 328 (520)
T TIGR03269 303 VSLEVKEGEIFGIVGTSGAGKTTLSK 328 (520)
T ss_pred EEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 35788999999999999988654443
No 317
>smart00857 Resolvase Resolvase, N terminal domain. The N-terminal domain of the resolvase family contains the active site and the dimer interface. The extended arm at the C-terminus of this domain connects to the C-terminal helix-turn-helix domain of resolvase.
Probab=21.11 E-value=86 Score=23.99 Aligned_cols=28 Identities=11% Similarity=0.134 Sum_probs=22.4
Q ss_pred cChHHHHHHHHhcCCCeEEEeeehhhhc
Q psy145 168 LPLADYLVNVFEKSYNSAFITTVADFHR 195 (203)
Q Consensus 168 PpL~DLL~~v~~~~PdvLvlt~~~~~~~ 195 (203)
|-+..||+++...+.|+||++-..-|-|
T Consensus 52 p~l~~ll~~~~~g~~~~ivv~~~~Rl~R 79 (148)
T smart00857 52 PGLQRLLADLRAGDIDVLVVYKLDRLGR 79 (148)
T ss_pred HHHHHHHHHHHcCCCCEEEEeccchhhC
Confidence 6788999999999899988887665544
No 318
>PF08660 Alg14: Oligosaccharide biosynthesis protein Alg14 like; InterPro: IPR013969 Alg14 is involved dolichol-linked oligosaccharide biosynthesis and anchors the catalytic subunit Alg13 to the ER membrane [].
Probab=21.04 E-value=71 Score=26.49 Aligned_cols=20 Identities=5% Similarity=-0.117 Sum_probs=15.7
Q ss_pred HHHHHHHhcCCCeEEEeeeh
Q psy145 172 DYLVNVFEKSYNSAFITTVA 191 (203)
Q Consensus 172 DLL~~v~~~~PdvLvlt~~~ 191 (203)
.=+..+..++||++|-||-+
T Consensus 83 ~~~~il~r~rPdvii~nGpg 102 (170)
T PF08660_consen 83 QSLRILRRERPDVIISNGPG 102 (170)
T ss_pred HHHHHHHHhCCCEEEEcCCc
Confidence 33557788999999999854
No 319
>PF15628 RRM_DME: RRM in Demeter
Probab=20.71 E-value=48 Score=26.21 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=17.9
Q ss_pred EEEEeecC-CCCeEEEeecccCC
Q psy145 119 VAARGSNP-SRNQFIATKIYSDA 140 (203)
Q Consensus 119 VavkG~N~-~G~~fvV~eI~~~p 140 (203)
-|+||.-| +|.+|.|.|+|..-
T Consensus 9 tAmrg~FPLnGTYFQ~nEVFaD~ 31 (103)
T PF15628_consen 9 TAMRGSFPLNGTYFQVNEVFADH 31 (103)
T ss_pred hhhCCccccCceEEEEEEEEecc
Confidence 36888877 89999999998643
No 320
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=20.60 E-value=1.1e+02 Score=25.68 Aligned_cols=25 Identities=12% Similarity=0.159 Sum_probs=16.9
Q ss_pred ChHHHHHHHHhcCCCeEEEeeehhh
Q psy145 169 PLADYLVNVFEKSYNSAFITTVADF 193 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~~~~ 193 (203)
|..+|++.+.+++||++.|+.....
T Consensus 121 p~~~l~~~~~~~~~d~v~lS~~~~~ 145 (201)
T cd02070 121 PPEEFVEAVKEHKPDILGLSALMTT 145 (201)
T ss_pred CHHHHHHHHHHcCCCEEEEeccccc
Confidence 6677777777777777777665433
No 321
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=20.25 E-value=55 Score=30.06 Aligned_cols=25 Identities=12% Similarity=0.222 Sum_probs=20.4
Q ss_pred CcceecCCcEEEEEeecCCCCeEEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
-++++-+|+++|+-|.|..|++-..
T Consensus 23 vsl~i~~Ge~~~llG~sGsGKSTLL 47 (356)
T PRK11650 23 IDLDVADGEFIVLVGPSGCGKSTLL 47 (356)
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHH
Confidence 4688999999999999998855433
No 322
>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase. Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.
Probab=20.19 E-value=2.7e+02 Score=23.64 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=11.8
Q ss_pred eecCCcEEEEEeecCCCCeEE
Q psy145 112 AVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 112 SLFPGQIVavkG~N~~G~~fv 132 (203)
.+=||+.|.+.| |.|+.|.
T Consensus 75 ~l~~Gd~v~i~g--P~G~~~~ 93 (246)
T cd06218 75 ELKAGDELDVLG--PLGNGFD 93 (246)
T ss_pred cCCCCCEEEEEe--cCCCCcC
Confidence 345788777777 5555443
No 323
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=20.19 E-value=51 Score=31.04 Aligned_cols=29 Identities=17% Similarity=0.277 Sum_probs=22.4
Q ss_pred cCCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 106 LPETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 106 ls~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
|++-++++-+|+++++-|.|.+|++-..+
T Consensus 44 L~~isl~i~~Gei~~LvG~NGsGKSTLLr 72 (400)
T PRK10070 44 VKDASLAIEEGEIFVIMGLSGSGKSTMVR 72 (400)
T ss_pred EEeEEEEEcCCCEEEEECCCCchHHHHHH
Confidence 34457889999999999999988654433
No 324
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=20.10 E-value=1e+02 Score=23.40 Aligned_cols=21 Identities=19% Similarity=0.102 Sum_probs=17.9
Q ss_pred hHHHHHHHHhcCCCeEEEeee
Q psy145 170 LADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 170 L~DLL~~v~~~~PdvLvlt~~ 190 (203)
+..+++.+.+.+||.+|+||-
T Consensus 24 l~~~~~~~~~~~~d~vi~~GD 44 (144)
T cd07400 24 LDRLLAEIKALDPDLVVITGD 44 (144)
T ss_pred HHHHHHHHhccCCCEEEECCC
Confidence 556788888999999999995
Done!