Query psy145
Match_columns 203
No_of_seqs 117 out of 185
Neff 4.6
Searched_HMMs 29240
Date Fri Aug 16 21:22:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy145.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/145hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3flo_A DNA polymerase alpha su 100.0 6.7E-46 2.3E-50 346.4 9.7 163 28-190 1-189 (460)
2 3e0j_A DNA polymerase subunit 96.0 0.049 1.7E-06 51.1 11.1 75 61-140 91-187 (476)
3 2kct_A Cytochrome C-type bioge 80.0 13 0.00045 27.4 8.7 77 63-140 6-85 (94)
4 4gs3_A Single-stranded DNA-bin 76.3 6.1 0.00021 29.8 6.0 62 63-125 9-78 (107)
5 1sr3_A APO-CCME; OB fold, beta 67.9 35 0.0012 26.8 8.8 74 63-140 26-101 (136)
6 1j6q_A Cytochrome C maturation 66.4 30 0.001 27.1 8.2 74 63-139 30-105 (136)
7 2h5e_A Peptide chain release f 59.2 7.2 0.00025 36.2 3.8 25 111-135 357-383 (529)
8 3tr5_A RF-3, peptide chain rel 58.9 7.9 0.00027 36.0 4.0 61 67-135 312-382 (528)
9 2cbz_A Multidrug resistance-as 56.1 3.7 0.00013 33.8 1.2 21 109-129 24-44 (237)
10 1htw_A HI0065; nucleotide-bind 53.8 3.3 0.00011 32.2 0.5 29 110-138 27-55 (158)
11 2pze_A Cystic fibrosis transme 52.3 4.6 0.00016 33.0 1.2 22 109-130 27-48 (229)
12 1g6h_A High-affinity branched- 51.7 5 0.00017 33.3 1.3 25 109-133 26-50 (257)
13 2ff7_A Alpha-hemolysin translo 51.7 4.7 0.00016 33.5 1.1 23 109-131 28-50 (247)
14 1vpl_A ABC transporter, ATP-bi 51.0 5.1 0.00018 33.6 1.3 24 109-132 34-57 (256)
15 2pcj_A ABC transporter, lipopr 50.8 5.6 0.00019 32.4 1.4 24 109-132 23-46 (224)
16 4g1u_C Hemin import ATP-bindin 50.7 5.1 0.00018 33.7 1.2 26 109-134 30-55 (266)
17 2d2e_A SUFC protein; ABC-ATPas 50.5 5 0.00017 33.2 1.1 26 109-134 22-47 (250)
18 2zu0_C Probable ATP-dependent 50.4 5.3 0.00018 33.5 1.3 30 109-138 39-68 (267)
19 1sgw_A Putative ABC transporte 50.3 4.4 0.00015 33.1 0.8 26 109-134 28-53 (214)
20 3tif_A Uncharacterized ABC tra 50.3 5.2 0.00018 32.8 1.2 23 109-131 24-46 (235)
21 2ixe_A Antigen peptide transpo 49.2 5.5 0.00019 33.5 1.2 26 109-134 38-63 (271)
22 3tiw_A Transitional endoplasmi 49.2 8.7 0.0003 31.4 2.3 43 82-125 20-63 (187)
23 1ji0_A ABC transporter; ATP bi 49.1 5.4 0.00019 32.8 1.1 26 109-134 25-50 (240)
24 2yz2_A Putative ABC transporte 48.3 5.8 0.0002 33.2 1.2 25 109-133 26-50 (266)
25 3vqt_A RF-3, peptide chain rel 48.2 46 0.0016 30.9 7.4 59 68-134 331-399 (548)
26 1mv5_A LMRA, multidrug resista 48.1 5.6 0.00019 32.7 1.0 21 110-130 22-42 (243)
27 4gp7_A Metallophosphoesterase; 48.1 5.8 0.0002 30.4 1.1 25 110-134 3-27 (171)
28 2ghi_A Transport protein; mult 47.6 6.1 0.00021 33.0 1.2 25 110-134 40-64 (260)
29 2qi9_C Vitamin B12 import ATP- 47.2 6.2 0.00021 32.9 1.2 25 109-133 19-43 (249)
30 2nq2_C Hypothetical ABC transp 46.8 6.3 0.00022 32.8 1.2 22 109-130 24-45 (253)
31 3qwz_A Transitional endoplasmi 45.8 9.3 0.00032 31.9 2.1 43 82-125 23-66 (211)
32 2olj_A Amino acid ABC transpor 45.8 6.9 0.00024 33.0 1.3 26 109-134 43-68 (263)
33 2ihy_A ABC transporter, ATP-bi 45.2 6.9 0.00024 33.2 1.2 26 109-134 40-65 (279)
34 3v5w_G G gamma-I, guanine nucl 43.7 2.9 9.8E-05 30.3 -1.2 23 170-192 40-62 (77)
35 2bbs_A Cystic fibrosis transme 43.7 8.1 0.00028 33.0 1.4 22 109-130 57-78 (290)
36 1b0u_A Histidine permease; ABC 43.3 8 0.00027 32.3 1.3 26 109-134 25-50 (262)
37 3gfo_A Cobalt import ATP-bindi 43.2 7.8 0.00027 32.9 1.2 25 109-133 27-51 (275)
38 2pi2_E Replication protein A 1 38.3 1.4E+02 0.0048 23.3 8.7 66 65-139 43-108 (142)
39 3kf8_B Protein TEN1; OB fold; 36.7 1.5E+02 0.005 23.0 8.3 84 56-144 14-104 (123)
40 3kf8_A Protein STN1; OB fold; 35.8 63 0.0021 27.3 5.6 74 66-139 86-182 (220)
41 2rdo_7 EF-G, elongation factor 32.9 2.2E+02 0.0074 27.2 9.6 24 111-134 375-400 (704)
42 3lnc_A Guanylate kinase, GMP k 32.7 19 0.00063 28.5 1.8 29 109-137 20-48 (231)
43 1znw_A Guanylate kinase, GMP k 32.4 14 0.00047 28.9 1.0 26 111-136 15-40 (207)
44 3fdx_A Putative filament prote 31.5 49 0.0017 23.3 3.8 32 159-190 84-115 (143)
45 3hgm_A Universal stress protei 31.0 52 0.0018 23.2 3.9 30 161-190 90-119 (147)
46 2q8u_A Exonuclease, putative; 30.9 28 0.00097 29.3 2.8 22 169-190 49-70 (336)
47 2dy1_A Elongation factor G; tr 30.3 77 0.0026 30.0 5.9 24 112-135 341-366 (665)
48 2ehv_A Hypothetical protein PH 30.2 17 0.00057 28.4 1.1 26 112-137 26-51 (251)
49 1yqt_A RNAse L inhibitor; ATP- 30.0 17 0.00059 33.6 1.4 23 109-131 305-327 (538)
50 2z08_A Universal stress protei 29.0 54 0.0018 23.1 3.6 32 159-190 77-108 (137)
51 1z6g_A Guanylate kinase; struc 28.6 15 0.0005 29.4 0.5 28 109-136 16-43 (218)
52 3b85_A Phosphate starvation-in 28.4 20 0.00069 28.9 1.4 25 113-137 19-43 (208)
53 3bk7_A ABC transporter ATP-bin 28.2 19 0.00066 34.0 1.4 24 109-132 375-398 (607)
54 2pt7_A CAG-ALFA; ATPase, prote 27.9 23 0.0008 30.5 1.7 76 110-187 165-246 (330)
55 3tnj_A Universal stress protei 27.5 64 0.0022 23.0 3.9 31 160-190 88-118 (150)
56 2pjz_A Hypothetical protein ST 27.4 20 0.00069 30.1 1.2 25 109-134 24-48 (263)
57 1dar_A EF-G, elongation factor 27.1 99 0.0034 29.4 6.1 25 111-135 367-393 (691)
58 1ii7_A MRE11 nuclease; RAD50, 27.1 40 0.0014 28.5 3.0 23 169-191 28-50 (333)
59 2yxb_A Coenzyme B12-dependent 26.5 49 0.0017 25.7 3.2 24 169-192 57-80 (161)
60 2yl4_A ATP-binding cassette SU 26.2 28 0.00095 32.3 2.0 26 109-134 363-388 (595)
61 1ccw_A Protein (glutamate muta 26.1 49 0.0017 24.8 3.1 27 168-194 41-67 (137)
62 3tho_B Exonuclease, putative; 25.8 36 0.0012 29.7 2.6 23 169-191 31-53 (379)
63 2xex_A Elongation factor G; GT 25.5 1.2E+02 0.0042 28.8 6.4 35 111-145 367-404 (693)
64 1tq8_A Hypothetical protein RV 25.4 73 0.0025 23.7 4.0 31 160-190 98-128 (163)
65 3nh6_A ATP-binding cassette SU 25.4 14 0.00047 32.0 -0.2 25 109-133 73-97 (306)
66 1q77_A Hypothetical protein AQ 25.0 62 0.0021 22.8 3.4 32 159-190 87-118 (138)
67 3dui_A Beta-galactoside-bindin 24.8 50 0.0017 25.0 2.9 26 109-134 9-35 (135)
68 3s3t_A Nucleotide-binding prot 24.5 66 0.0023 22.7 3.4 32 159-190 85-117 (146)
69 2gm3_A Unknown protein; AT3G01 24.3 73 0.0025 23.5 3.8 32 159-190 102-133 (175)
70 4a74_A DNA repair and recombin 24.3 24 0.00083 27.0 1.1 27 112-138 21-47 (231)
71 3t1i_A Double-strand break rep 24.3 43 0.0015 30.6 2.9 26 169-195 59-84 (431)
72 3b60_A Lipid A export ATP-bind 24.3 27 0.00091 32.3 1.5 26 109-134 362-387 (582)
73 1mjh_A Protein (ATP-binding do 24.3 65 0.0022 23.3 3.4 32 159-190 98-129 (162)
74 2eyu_A Twitching motility prot 24.0 19 0.00063 30.1 0.3 28 109-136 18-45 (261)
75 3tui_C Methionine import ATP-b 24.0 26 0.00088 31.4 1.3 22 109-130 47-68 (366)
76 2k50_A Replication factor A re 24.0 1.9E+02 0.0067 20.4 6.0 59 66-125 17-83 (115)
77 3b5x_A Lipid A export ATP-bind 23.7 27 0.00092 32.3 1.4 28 107-134 360-387 (582)
78 2v9p_A Replication protein E1; 23.7 20 0.0007 31.0 0.6 23 110-132 120-142 (305)
79 1zp6_A Hypothetical protein AT 23.7 27 0.00091 26.3 1.2 27 112-138 5-31 (191)
80 1n0u_A EF-2, elongation factor 23.5 2.8E+02 0.0095 27.1 8.6 22 111-132 446-470 (842)
81 1jmv_A USPA, universal stress 23.4 72 0.0025 22.4 3.4 30 161-190 82-111 (141)
82 3kdf_A Replication protein A 1 23.4 2.4E+02 0.0081 21.2 8.9 65 66-140 23-88 (121)
83 3tr0_A Guanylate kinase, GMP k 23.4 27 0.00092 26.5 1.2 26 111-136 2-27 (205)
84 2wkk_A Galectin-2; sugar-bindi 22.4 67 0.0023 24.9 3.3 24 111-134 15-40 (150)
85 1hlc_A Human lectin; HET: GAL 22.1 86 0.0029 23.5 3.8 25 110-134 6-31 (129)
86 4fbw_A DNA repair protein RAD3 21.9 59 0.002 29.5 3.3 27 169-196 40-66 (417)
87 2jeo_A Uridine-cytidine kinase 21.8 26 0.0009 28.1 0.8 28 109-136 18-45 (245)
88 4fbk_A DNA repair and telomere 21.6 52 0.0018 30.6 2.9 26 169-195 103-128 (472)
89 3qf4_B Uncharacterized ABC tra 21.5 38 0.0013 31.5 2.0 24 109-132 374-397 (598)
90 1cr0_A DNA primase/helicase; R 21.4 32 0.0011 28.2 1.3 26 111-136 30-55 (296)
91 3av0_A DNA double-strand break 21.4 55 0.0019 28.4 2.9 22 170-191 49-70 (386)
92 2wfw_A ARC; ATP-binding protei 21.2 88 0.003 25.1 3.8 42 98-139 27-79 (153)
93 3dlo_A Universal stress protei 21.1 76 0.0026 23.4 3.3 31 160-190 96-126 (155)
94 1w6n_A Galectin-1; carbohydrat 21.0 93 0.0032 23.4 3.8 26 109-134 7-33 (134)
95 1cz4_A VCP-like ATPase; double 20.9 37 0.0013 27.4 1.5 26 100-125 22-48 (185)
96 2vp4_A Deoxynucleoside kinase; 20.5 29 0.00098 27.6 0.8 26 111-136 15-40 (230)
97 3c8u_A Fructokinase; YP_612366 20.4 39 0.0014 26.2 1.6 23 114-136 20-42 (208)
98 3fg9_A Protein of universal st 20.3 74 0.0025 22.9 3.0 32 159-190 95-128 (156)
99 2dum_A Hypothetical protein PH 20.3 89 0.0031 22.8 3.5 32 159-190 93-126 (170)
100 3ozx_A RNAse L inhibitor; ATP 20.2 35 0.0012 31.7 1.4 21 110-130 288-308 (538)
No 1
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.7e-46 Score=346.35 Aligned_cols=163 Identities=22% Similarity=0.230 Sum_probs=137.2
Q ss_pred cccccccccchhHHHhhhhc----cchh--cccc--ccccCccCccccEEEEEEEeeCCC--CCCCCcceeEEEeeccCC
Q psy145 28 AYRIPWISNLSQFNAIIGLG----TVTI--GDIT--LLVPFLFGDTTEITAIGRIVCDTS--DGKLNAASVLLEGDEVTS 97 (203)
Q Consensus 28 ~yrYMyek~~d~~e~L~e~~----~vl~--~~Ie--ef~~~~~~sq~~v~vvGRI~~Ds~--egkLn~~Sv~LEgsr~~g 97 (203)
.|||||+|..|+.|-|-++. +++. ++|+ +|+++..+||++|+||||||||+. +||||++||+|||||+.|
T Consensus 1 ~yr~M~~kl~e~~~vLd~~I~~~~~~~~~~~~~~~~~f~~p~~~sq~~v~~vGRI~~Ds~~~egkLn~~Sl~LE~sr~~g 80 (460)
T 3flo_A 1 KFRTMRQNLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTIQSQSEIYAVGRIVPDSPTYDKFLNPESLSLETSRMGG 80 (460)
T ss_dssp --CCSCCCHHHHHHHHHHHHHHHHHHHHHHHTCCGGGBCCTTSCCSSCEEEEEEEEESSSSCCSCCCTTSEEEECCHHHH
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcccCccccEEEEEEEeeCCCCCCCCcchhheEEEeccccC
Confidence 59999977666555444442 2222 3466 588999999999999999999984 899999999999999999
Q ss_pred CceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccCCCCCCCCCcccccc----ccccccceEEEEcCc----
Q psy145 98 GGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQ----NTEMYKLRVSYEKGL---- 168 (203)
Q Consensus 98 ~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p~lp~p~s~~~~~~----~~~~~~l~i~~A~GP---- 168 (203)
+|+||+|||++ ++||||||||||+||+|++|++|+|+|||++|++++|.+++.+.+ .....+++|++||||
T Consensus 81 ~G~rV~Ldls~l~~~slFPGQIVav~G~N~~G~~f~v~ei~~~P~~~~p~s~~~~l~~~~~~~~~~~l~ivvAsGPyT~s 160 (460)
T 3flo_A 81 VGRRVRLDLSQVNELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVSTSQELQEFQANLEGSSLKVIVTCGPYFAN 160 (460)
T ss_dssp TTCEEEEECTTCCCEEECTTCEEEEEEECSSSSCEEEEEECCCCCCCCCEEEHHHHHHHHHHHTSSCEEEEEEESCCSCS
T ss_pred CCeEEEeecccCCceeecCCCEEEEEEEcCCCCEEEEeeeccCCCCCCCCCCHHHhhhhhhhccCCCcEEEEEeCCccCC
Confidence 99999999999 999999999999999999999999999999999988877765432 122368999999999
Q ss_pred ------ChHHHHHHHHhc-CCCeEEEeee
Q psy145 169 ------PLADYLVNVFEK-SYNSAFITTV 190 (203)
Q Consensus 169 ------pL~DLL~~v~~~-~PdvLvlt~~ 190 (203)
||+||+++++++ +||+|||+|-
T Consensus 161 dnl~yepL~~Ll~~v~~~~kPdvLIL~GP 189 (460)
T 3flo_A 161 DNFSLELLQEFIDSINNEVKPHVLIMFGP 189 (460)
T ss_dssp SCCCCHHHHHHHHHCCCCCCCSEEEEESC
T ss_pred CccChHHHHHHHHHHHhccCCCEEEEecC
Confidence 567999999997 8999999993
No 2
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=96.00 E-value=0.049 Score=51.13 Aligned_cols=75 Identities=17% Similarity=0.224 Sum_probs=51.8
Q ss_pred ccCccccEEEEEEEeeCC----------CCC-CC-----------CcceeEEEeeccCCCceEEEeecCCCcceecCCcE
Q psy145 61 LFGDTTEITAIGRIVCDT----------SDG-KL-----------NAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQI 118 (203)
Q Consensus 61 ~~~sq~~v~vvGRI~~Ds----------~eg-kL-----------n~~Sv~LEgsr~~g~G~rV~Ldls~~~~SLFPGQI 118 (203)
.....+..+++|-|.++. +++ .+ ....++||-. ..||+|...-+.-.|-+|.|
T Consensus 91 dl~~ge~c~viGTvyk~m~lKPsIL~eis~e~~~~~~~~~~~y~~~~D~l~LEDe-----sGRv~L~g~~~~~~lVTG~V 165 (476)
T 3e0j_A 91 ELQPEEKCCVVGTLFKAMPLQPSILREVSEEHNLLPQPPRSKYIHPDDELVLEDE-----LQRIKLKGTIDVSKLVTGTV 165 (476)
T ss_dssp SCCTTCCEEEEEEEEEEC----------------------CCCCCSSCEEEEECS-----SCEEEEEESCCTTTCCTTCE
T ss_pred cccCCCEEEEEEEEEecccCCCcHHHHHhhhhccCCCCccccccCCCceEEEECC-----CCEEEEEEEcccccccCCcE
Confidence 345778999999999863 011 11 1235777753 45888877226677999999
Q ss_pred EEEEeecCCCCeEEEeecccCC
Q psy145 119 VAARGSNPSRNQFIATKIYSDA 140 (203)
Q Consensus 119 VavkG~N~~G~~fvV~eI~~~p 140 (203)
|||+|+-...+.|.|++|+-+-
T Consensus 166 vaV~G~~~~~G~F~V~di~~Pd 187 (476)
T 3e0j_A 166 LAVFGSVRDDGKFLVEDYCFAD 187 (476)
T ss_dssp EEEEEEECTTSSEEEEEEEECB
T ss_pred EEEEEEEcCCCeEEEEEEEcCC
Confidence 9999995555678999986643
No 3
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=80.02 E-value=13 Score=27.44 Aligned_cols=77 Identities=14% Similarity=0.203 Sum_probs=51.3
Q ss_pred CccccEEEEEEEeeCCCCCCC-CcceeEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeecCC-CCeEEEeecccC
Q psy145 63 GDTTEITAIGRIVCDTSDGKL-NAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPS-RNQFIATKIYSD 139 (203)
Q Consensus 63 ~sq~~v~vvGRI~~Ds~egkL-n~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~-G~~fvV~eI~~~ 139 (203)
+....+.+-|.|...+ =.+- +...+...-.+....+..|++.... ..=-|=.||=|+++|+-.. ++.|.+++|+.-
T Consensus 6 ~~~~~iRvgG~V~~GS-v~r~~~~~~v~F~vtD~~~~~~~v~V~Y~GilPDlFrEGqgVV~~G~l~~~~g~F~A~evLaK 84 (94)
T 2kct_A 6 DKLHTVRLFGTVAADG-LTMLDGAPGVRFRLEDKDNTSKTVWVLYKGAVPDTFKPGVEVIIEGGLAPGEDTFKARTLMTK 84 (94)
T ss_dssp CTTCCEEEEEEECSTT-CEECTTSSEEEEEEECSSCTTCEEEEEEESCCCTTCCTTCEEEEEEEECTTCSEEEEEEEEES
T ss_pred CCCCeEEEeeEEeCCe-EEecCCCCEEEEEEEcCCCCCcEEEEEECCCCCccccCCCeEEEEEEEeCCCCEEEEeEEEEe
Confidence 4556889999998765 1111 1223444433332247889998888 3334668999999999754 579999999864
Q ss_pred C
Q psy145 140 A 140 (203)
Q Consensus 140 p 140 (203)
-
T Consensus 85 h 85 (94)
T 2kct_A 85 C 85 (94)
T ss_dssp S
T ss_pred C
Confidence 3
No 4
>4gs3_A Single-stranded DNA-binding protein; primosome, oligonucleotide/oligosaccharide binding domain, D binding protein; 1.09A {Thermoanaerobacter tengcongensis}
Probab=76.29 E-value=6.1 Score=29.84 Aligned_cols=62 Identities=15% Similarity=0.257 Sum_probs=46.5
Q ss_pred CccccEEEEEEEeeCC-----CCCCCCcceeEEEeeccCCCceEEEeecCC---CcceecCCcEEEEEeec
Q psy145 63 GDTTEITAIGRIVCDT-----SDGKLNAASVLLEGDEVTSGGRSISLKLPE---TGVAVFPGQIVAARGSN 125 (203)
Q Consensus 63 ~sq~~v~vvGRI~~Ds-----~egkLn~~Sv~LEgsr~~g~G~rV~Ldls~---~~~SLFPGQIVavkG~N 125 (203)
.....|+.+|||+.|. +.|+ .-.+.-|...|....-..+++-+.+ ....++-|.-|.++|.-
T Consensus 9 ~~~N~V~LiGrl~~dpelr~t~~G~-~v~~f~lAV~R~~~~~Dfi~ivvw~klAe~~~~~kG~~v~v~G~l 78 (107)
T 4gs3_A 9 LENNTVTLVGKVFTPLEFSHELYGE-KFFNFILEVPRLSETKDYLPITISNRLFEGMNLEVGTRVKIEGQL 78 (107)
T ss_dssp -CCSCEEEEEEECSCCEEEEEETTE-EEEEEEEEEECTTSCEEEEEEEEEGGGSTTCCCCTTCEEEEEEEE
T ss_pred hhCCEEEEEEEECCCceEEEecCCc-EEEEEEEEeCCCCCCCcEEEEEEEhHHhhHHhhcCCCEEEEEEEE
Confidence 3567899999999997 1242 1235677888887777888887776 66678899999999964
No 5
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=67.88 E-value=35 Score=26.79 Aligned_cols=74 Identities=14% Similarity=0.106 Sum_probs=48.7
Q ss_pred CccccEEEEEEEeeCCCCCCC-CcceeEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccCC
Q psy145 63 GDTTEITAIGRIVCDTSDGKL-NAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSDA 140 (203)
Q Consensus 63 ~sq~~v~vvGRI~~Ds~egkL-n~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p 140 (203)
+....|.+-|.|...+ =.+- +...+...-.+ .+..|++...+ ..=-|=-||=|+++|+-..++.|.+++|+.-=
T Consensus 26 ~~g~~iRvgG~V~~GS-v~r~~~~~~v~F~vtD---~~~~v~V~Y~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLAKh 101 (136)
T 1sr3_A 26 EVGQRLRVGGMVMPGS-VQRDPNSLKVTFTIYD---AEGSVDVSYEGILPDLFREGQGVVVQGELEKGNHILAKEVLAKH 101 (136)
T ss_dssp CTTSEEEEEEEECTTT-CEECSSSSEEEEEEEC---SSCEEEEEEESCCCTTCCTTSEEEEEEEECSSSEEEESSCBCCS
T ss_pred CCCCEEEEeeEEeCCc-EEEcCCCCEEEEEEEe---CCcEEEEEECCCCCccccCCCeEEEEEEECCCCeEEEEEEEecC
Confidence 3456899999998654 1111 12223333332 26788888877 33334469999999998767899999997543
No 6
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=66.41 E-value=30 Score=27.13 Aligned_cols=74 Identities=16% Similarity=0.133 Sum_probs=49.1
Q ss_pred CccccEEEEEEEeeCCCCCCC-CcceeEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccC
Q psy145 63 GDTTEITAIGRIVCDTSDGKL-NAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSD 139 (203)
Q Consensus 63 ~sq~~v~vvGRI~~Ds~egkL-n~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~ 139 (203)
.....+.+.|.|...+ =.+- +...+...-.+. .+..|++...+ ..=-|=-||-|+++|+--.++.|.+++|+.-
T Consensus 30 ~~g~~iRvgG~V~~GS-v~r~~~~~~v~F~vtD~--~~~~v~V~Y~GilPDlFrEGqgVVa~G~l~~~g~F~A~eVLaK 105 (136)
T 1j6q_A 30 EAGQRIRVGGMVTVGS-MVRDPNSLHVQFAVHDS--LGGEILVTYDDLLPDLFREGQGIVAQGVLGEDGKLAATEVLAK 105 (136)
T ss_dssp CTTCEEEEEEEECTTC-CEECTTSSCEEEEEECT--TCCCEEEEECSCCTTSCCSSSEEEEEEEECSTTSEEEEEEECC
T ss_pred CCCCEEEEeEEEeCCc-EEecCCCCEEEEEEEcC--CCCEEEEEECCCCCccccCCCeEEEEEEECCCCeEEEEEEEec
Confidence 3446899999998655 1111 112233333332 36888888888 3333557999999999876779999999653
No 7
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=59.16 E-value=7.2 Score=36.22 Aligned_cols=25 Identities=16% Similarity=0.404 Sum_probs=20.0
Q ss_pred ceecCCcEEEEEeec--CCCCeEEEee
Q psy145 111 VAVFPGQIVAARGSN--PSRNQFIATK 135 (203)
Q Consensus 111 ~SLFPGQIVavkG~N--~~G~~fvV~e 135 (203)
=..+||+|||+.|.. .+|+++.-.+
T Consensus 357 ~~a~aGdiv~i~~l~~~~~Gdtl~~~~ 383 (529)
T 2h5e_A 357 EEAYPGDILGLHNHGTIQIGDTFTQGE 383 (529)
T ss_dssp CEECTTCEEEECCSSCCCTTCEEESSC
T ss_pred ceECCCCEEEEeccCCCccCCEeecCC
Confidence 368999999999974 3789888655
No 8
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=58.89 E-value=7.9 Score=36.01 Aligned_cols=61 Identities=15% Similarity=0.253 Sum_probs=38.6
Q ss_pred cEEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEee----cC--C--CcceecCCcEEEEEeec--CCCCeEEEee
Q psy145 67 EITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLK----LP--E--TGVAVFPGQIVAARGSN--PSRNQFIATK 135 (203)
Q Consensus 67 ~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ld----ls--~--~~~SLFPGQIVavkG~N--~~G~~fvV~e 135 (203)
.-++++||++ |+|....-+.-.. .|+..++. +. + .-=.++||+|||+.|.. .+|++|.-.+
T Consensus 312 g~l~~~RV~s----G~l~~g~~v~~~~----~~~~~rv~~~~~~~~~~~~~v~~a~aGdI~~~~~l~~~~~GDtl~~~~ 382 (528)
T 3tr5_A 312 DRIAFLRIAS----GQYQKGMKAYHVR----LKKEIQINNALTFMAGKRENAEEAWPGDIIGLHNHGTIQIGDTFTQGE 382 (528)
T ss_dssp CEEEEEEEEE----SCEETTEEEEETT----TTEEEEESSCBCCBTTCSSCCSEECTTCEEEEEESSSCCTTCEEESSC
T ss_pred ceEEEEEEec----CeEcCCCEEEecC----CCceEEEeeeEEEeCCCeeECCEECCCCEEEEcCCCCCccCCEEcCCC
Confidence 4578888885 6777766554322 23444431 11 1 23468999999999853 4799997654
No 9
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=56.06 E-value=3.7 Score=33.80 Aligned_cols=21 Identities=19% Similarity=0.229 Sum_probs=18.6
Q ss_pred CcceecCCcEEEEEeecCCCC
Q psy145 109 TGVAVFPGQIVAARGSNPSRN 129 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~ 129 (203)
-++++-||+++|+-|.|.+|+
T Consensus 24 vsl~i~~Ge~~~i~G~nGsGK 44 (237)
T 2cbz_A 24 ITFSIPEGALVAVVGQVGCGK 44 (237)
T ss_dssp EEEEECTTCEEEEECSTTSSH
T ss_pred eEEEECCCCEEEEECCCCCCH
Confidence 358899999999999999884
No 10
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=53.82 E-value=3.3 Score=32.22 Aligned_cols=29 Identities=7% Similarity=0.035 Sum_probs=23.7
Q ss_pred cceecCCcEEEEEeecCCCCeEEEeeccc
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIATKIYS 138 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~eI~~ 138 (203)
++++-||++|++-|.|..|++-.++-|..
T Consensus 27 sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g 55 (158)
T 1htw_A 27 KLHTEKAIMVYLNGDLGAGKTTLTRGMLQ 55 (158)
T ss_dssp HHCCSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccccCCCCEEEEECCCCCCHHHHHHHHHH
Confidence 57889999999999999998766665543
No 11
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=52.32 E-value=4.6 Score=32.97 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.0
Q ss_pred CcceecCCcEEEEEeecCCCCe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~ 130 (203)
-++++-+|+++|+-|.|.+|++
T Consensus 27 vsl~i~~Ge~~~i~G~nGsGKS 48 (229)
T 2pze_A 27 INFKIERGQLLAVAGSTGAGKT 48 (229)
T ss_dssp EEEEEETTCEEEEECCTTSSHH
T ss_pred eEEEEcCCCEEEEECCCCCCHH
Confidence 3588999999999999998854
No 12
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=51.69 E-value=5 Score=33.35 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=20.6
Q ss_pred CcceecCCcEEEEEeecCCCCeEEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
-++++-+|+++++-|.|.+|++=..
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl 50 (257)
T 1g6h_A 26 VSISVNKGDVTLIIGPNGSGKSTLI 50 (257)
T ss_dssp ECCEEETTCEEEEECSTTSSHHHHH
T ss_pred eEEEEeCCCEEEEECCCCCCHHHHH
Confidence 4589999999999999998855433
No 13
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=51.66 E-value=4.7 Score=33.47 Aligned_cols=23 Identities=13% Similarity=0.294 Sum_probs=19.5
Q ss_pred CcceecCCcEEEEEeecCCCCeE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQF 131 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~f 131 (203)
-++++-+|+++|+-|.|.+|++=
T Consensus 28 vsl~i~~Ge~~~i~G~nGsGKST 50 (247)
T 2ff7_A 28 INLSIKQGEVIGIVGRSGSGKST 50 (247)
T ss_dssp EEEEEETTCEEEEECSTTSSHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHH
Confidence 35889999999999999988543
No 14
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=51.00 E-value=5.1 Score=33.57 Aligned_cols=24 Identities=17% Similarity=0.213 Sum_probs=20.0
Q ss_pred CcceecCCcEEEEEeecCCCCeEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fv 132 (203)
-++++-+|+++++-|.|.+|.+=.
T Consensus 34 vsl~i~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 34 ISFEIEEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHH
T ss_pred eEEEEcCCcEEEEECCCCCCHHHH
Confidence 458899999999999999885433
No 15
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=50.78 E-value=5.6 Score=32.35 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=20.2
Q ss_pred CcceecCCcEEEEEeecCCCCeEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fv 132 (203)
-++++-+|+++++-|.|.+|++=.
T Consensus 23 vsl~i~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 23 ISLSVKKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp EEEEEETTCEEEEEECTTSCHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHH
Confidence 468899999999999999986533
No 16
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=50.69 E-value=5.1 Score=33.70 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=21.4
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-+|++||+-|.|..|++=..+
T Consensus 30 vsl~i~~Ge~~~liG~nGsGKSTLl~ 55 (266)
T 4g1u_C 30 VSLHIASGEMVAIIGPNGAGKSTLLR 55 (266)
T ss_dssp EEEEEETTCEEEEECCTTSCHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHHH
Confidence 46899999999999999988654444
No 17
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=50.48 E-value=5 Score=33.22 Aligned_cols=26 Identities=19% Similarity=0.280 Sum_probs=21.1
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-+|+++++-|.|.+|.+=..+
T Consensus 22 vsl~i~~Ge~~~l~G~nGsGKSTLlk 47 (250)
T 2d2e_A 22 VNLVVPKGEVHALMGPNGAGKSTLGK 47 (250)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 35889999999999999998654444
No 18
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=50.38 E-value=5.3 Score=33.50 Aligned_cols=30 Identities=23% Similarity=0.397 Sum_probs=23.5
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeeccc
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKIYS 138 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI~~ 138 (203)
-++++-+|++|++-|.|..|++=..+=|..
T Consensus 39 vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G 68 (267)
T 2zu0_C 39 LSLDVHPGEVHAIMGPNGSGKSTLSATLAG 68 (267)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 468899999999999999997655554433
No 19
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=50.30 E-value=4.4 Score=33.12 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=21.1
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-+|+++++-|.|.+|.+=..+
T Consensus 28 vsl~i~~Ge~~~iiG~NGsGKSTLlk 53 (214)
T 1sgw_A 28 ITMTIEKGNVVNFHGPNGIGKTTLLK 53 (214)
T ss_dssp EEEEEETTCCEEEECCTTSSHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 46889999999999999998654443
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=50.30 E-value=5.2 Score=32.84 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=19.7
Q ss_pred CcceecCCcEEEEEeecCCCCeE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQF 131 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~f 131 (203)
-++++-||+++|+-|.|.+|++=
T Consensus 24 isl~i~~Ge~~~iiG~nGsGKST 46 (235)
T 3tif_A 24 VNLNIKEGEFVSIMGPSGSGKST 46 (235)
T ss_dssp EEEEECTTCEEEEECSTTSSHHH
T ss_pred eeEEEcCCCEEEEECCCCCcHHH
Confidence 35889999999999999988653
No 21
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=49.24 E-value=5.5 Score=33.54 Aligned_cols=26 Identities=27% Similarity=0.494 Sum_probs=21.0
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||+++|+-|.|.+|++=..+
T Consensus 38 vsl~i~~Ge~~~i~G~nGsGKSTLlk 63 (271)
T 2ixe_A 38 LTFTLYPGKVTALVGPNGSGKSTVAA 63 (271)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHHH
T ss_pred eEEEECCCCEEEEECCCCCCHHHHHH
Confidence 35889999999999999988654443
No 22
>3tiw_A Transitional endoplasmic reticulum ATPase; beta-barrel alpha-helix, transport protein ATPase ubiquitin ubiquitin, phosphorylation; 1.80A {Homo sapiens} PDB: 3qq8_A 3qq7_A 3qc8_A
Probab=49.20 E-value=8.7 Score=31.44 Aligned_cols=43 Identities=19% Similarity=0.368 Sum_probs=31.6
Q ss_pred CCCcceeEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeec
Q psy145 82 KLNAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSN 125 (203)
Q Consensus 82 kLn~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N 125 (203)
|-.|+.+..+-..... ...|+|+-+. +...||||.+|.++|..
T Consensus 20 ~~~p~~l~V~ea~~~D-~givrl~p~~m~~Lgl~~GD~V~I~Gkr 63 (187)
T 3tiw_A 20 KSRPNRLIVDEAINED-NSVVSLSQPKMDELQLFRGDTVLLKGKK 63 (187)
T ss_dssp --CCCEEEEEECSSCC-TTEEEECHHHHHHHTCCTTCEEEEECST
T ss_pred ccCCCeEEEcccccCC-CcEEEECHHHHHHcCCCCCCEEEEECCC
Confidence 4456666666554432 4578888888 99999999999999975
No 23
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=49.11 E-value=5.4 Score=32.80 Aligned_cols=26 Identities=27% Similarity=0.279 Sum_probs=21.0
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-+|+++++-|.|..|++=..+
T Consensus 25 vsl~i~~Ge~~~l~G~nGsGKSTLl~ 50 (240)
T 1ji0_A 25 IDLKVPRGQIVTLIGANGAGKTTTLS 50 (240)
T ss_dssp EEEEEETTCEEEEECSTTSSHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 45889999999999999988654433
No 24
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=48.27 E-value=5.8 Score=33.17 Aligned_cols=25 Identities=12% Similarity=0.230 Sum_probs=20.3
Q ss_pred CcceecCCcEEEEEeecCCCCeEEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
-++++-+|+++++-|.|.+|++=..
T Consensus 26 vsl~i~~Ge~~~liG~nGsGKSTLl 50 (266)
T 2yz2_A 26 VSLVINEGECLLVAGNTGSGKSTLL 50 (266)
T ss_dssp EEEEECTTCEEEEECSTTSSHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHH
Confidence 3588999999999999998854333
No 25
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=48.16 E-value=46 Score=30.89 Aligned_cols=59 Identities=19% Similarity=0.320 Sum_probs=34.8
Q ss_pred EEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEee----cCC----CcceecCCcEEEEEeecC--CCCeEEEe
Q psy145 68 ITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLK----LPE----TGVAVFPGQIVAARGSNP--SRNQFIAT 134 (203)
Q Consensus 68 v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ld----ls~----~~~SLFPGQIVavkG~N~--~G~~fvV~ 134 (203)
-++++||++ |+|...+-+.- .+.|...++. +.. .-=.+.+|+|||+.|... +|+++.-.
T Consensus 331 rla~~RV~s----G~l~~g~~v~~----~~~~~~~rv~~l~~~~g~~~~~v~~a~AGdIvai~gl~~~~~GDTl~~~ 399 (548)
T 3vqt_A 331 RMAFLRICS----GTFTRGMRLKH----HRTGKDVTVANATIFMAQDRTGVEEAFPGDIIGIPNHGTIKIGDTFTES 399 (548)
T ss_dssp CEEEEEEEE----SCEETTCEEEE----TTTTEEEECTTCEECCCSSCCSSCEECTTCEEEEECSSCCCTTCEEESS
T ss_pred eEEEEEEec----ceecCCCEEEe----eccccccccchhhhhccccccccCEEecCCEEEecCCccCccCCEecCC
Confidence 357888886 56665554431 1123333321 111 334689999999999743 68887643
No 26
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=48.15 E-value=5.6 Score=32.70 Aligned_cols=21 Identities=19% Similarity=0.311 Sum_probs=18.1
Q ss_pred cceecCCcEEEEEeecCCCCe
Q psy145 110 GVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~ 130 (203)
++++-||+++|+-|.|.+|++
T Consensus 22 sl~i~~Ge~~~i~G~nGsGKS 42 (243)
T 1mv5_A 22 SFEAQPNSIIAFAGPSGGGKS 42 (243)
T ss_dssp EEEECTTEEEEEECCTTSSHH
T ss_pred EEEEcCCCEEEEECCCCCCHH
Confidence 578899999999999987744
No 27
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=48.14 E-value=5.8 Score=30.42 Aligned_cols=25 Identities=20% Similarity=0.138 Sum_probs=21.7
Q ss_pred cceecCCcEEEEEeecCCCCeEEEe
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++++-+|++|++-|.|.+|++-.++
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHH
T ss_pred cccCCCCEEEEEECCCCCCHHHHHH
Confidence 4678899999999999999877666
No 28
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=47.57 E-value=6.1 Score=33.01 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=20.1
Q ss_pred cceecCCcEEEEEeecCCCCeEEEe
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++++-||++||+-|.|.+|++=..+
T Consensus 40 sl~i~~Ge~~~i~G~nGsGKSTLl~ 64 (260)
T 2ghi_A 40 NFFIPSGTTCALVGHTGSGKSTIAK 64 (260)
T ss_dssp EEEECTTCEEEEECSTTSSHHHHHH
T ss_pred EEEECCCCEEEEECCCCCCHHHHHH
Confidence 5888999999999999988544333
No 29
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=47.16 E-value=6.2 Score=32.93 Aligned_cols=25 Identities=20% Similarity=0.217 Sum_probs=20.5
Q ss_pred CcceecCCcEEEEEeecCCCCeEEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
-++++-+|+++++-|.|.+|++=..
T Consensus 19 vsl~i~~Ge~~~liG~NGsGKSTLl 43 (249)
T 2qi9_C 19 LSGEVRAGEILHLVGPNGAGKSTLL 43 (249)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHHH
Confidence 4688999999999999998855433
No 30
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=46.77 E-value=6.3 Score=32.85 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=18.8
Q ss_pred CcceecCCcEEEEEeecCCCCe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~ 130 (203)
-++++-+|+++++-|.|.+|.+
T Consensus 24 isl~i~~Ge~~~l~G~nGsGKS 45 (253)
T 2nq2_C 24 LNFDLNKGDILAVLGQNGCGKS 45 (253)
T ss_dssp EEEEEETTCEEEEECCSSSSHH
T ss_pred EEEEECCCCEEEEECCCCCCHH
Confidence 3588999999999999998743
No 31
>3qwz_A Transitional endoplasmic reticulum ATPase; UBX, P97 binding, transport protein; HET: MLY; 2.00A {Homo sapiens} PDB: 2pjh_B
Probab=45.79 E-value=9.3 Score=31.87 Aligned_cols=43 Identities=19% Similarity=0.365 Sum_probs=30.8
Q ss_pred CCCcceeEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeec
Q psy145 82 KLNAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSN 125 (203)
Q Consensus 82 kLn~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N 125 (203)
|-.|+.+..+-..... ...|+|+-+. +...||||.+|.++|+.
T Consensus 23 ~~~p~~l~V~ea~~~D-rgivrl~p~~m~~Lgl~~GD~V~I~Gkr 66 (211)
T 3qwz_A 23 KNRPNRLIVDEAINED-NSVVSLSQPKMDELQLFRGDTVLLKGXK 66 (211)
T ss_dssp ---CEEEEEEECSCCC-TTEEEECHHHHHHHTCCBTCEEEEECST
T ss_pred ccCCCeeEEcccccCC-CcEEEECHHHHHHcCCCCCCEEEEeCCC
Confidence 4456666666654322 5678888888 99999999999999975
No 32
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=45.76 E-value=6.9 Score=32.96 Aligned_cols=26 Identities=19% Similarity=0.262 Sum_probs=21.0
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-+|+++|+-|.|..|++=..+
T Consensus 43 vsl~i~~Gei~~liG~NGsGKSTLlk 68 (263)
T 2olj_A 43 INVHIREGEVVVVIGPSGSGKSTFLR 68 (263)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHH
T ss_pred eEEEEcCCCEEEEEcCCCCcHHHHHH
Confidence 46889999999999999988554433
No 33
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=45.18 E-value=6.9 Score=33.20 Aligned_cols=26 Identities=12% Similarity=0.050 Sum_probs=21.1
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-+|+++|+-|.|.+|++=..+
T Consensus 40 isl~i~~Ge~~~liG~NGsGKSTLlk 65 (279)
T 2ihy_A 40 ISWQIAKGDKWILYGLNGAGKTTLLN 65 (279)
T ss_dssp EEEEEETTCEEEEECCTTSSHHHHHH
T ss_pred eeEEEcCCCEEEEECCCCCcHHHHHH
Confidence 46889999999999999998654333
No 34
>3v5w_G G gamma-I, guanine nucleotide-binding protein G(I)/G(S)/G(O) gamma-2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Bos taurus} PDB: 1xhm_B 3pvu_G* 3cik_G 3krw_G* 3krx_G* 3psc_G 1omw_G* 3pvw_G* 3uzs_G 1gp2_G* 1gg2_G* 2bcj_G* 3ah8_G* 2qns_B 3kj5_B 3sn6_G*
Probab=43.68 E-value=2.9 Score=30.34 Aligned_cols=23 Identities=17% Similarity=0.228 Sum_probs=20.9
Q ss_pred hHHHHHHHHhcCCCeEEEeeehh
Q psy145 170 LADYLVNVFEKSYNSAFITTVAD 192 (203)
Q Consensus 170 L~DLL~~v~~~~PdvLvlt~~~~ 192 (203)
.+||++||.++.+++-+|||+.+
T Consensus 40 aadL~~yc~~~~~~DpLl~Gvp~ 62 (77)
T 3v5w_G 40 AADLMAYCEAHAKEDPLLTPVPA 62 (77)
T ss_dssp HHHHHHHHHHSGGGCTTTSCCCG
T ss_pred HHHHHHHHHhcCCCCCCcCCCCC
Confidence 57999999999999999999864
No 35
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=43.67 E-value=8.1 Score=33.05 Aligned_cols=22 Identities=23% Similarity=0.338 Sum_probs=19.0
Q ss_pred CcceecCCcEEEEEeecCCCCe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~ 130 (203)
-++++-+|+++|+-|.|..|++
T Consensus 57 isl~i~~Ge~~~i~G~NGsGKS 78 (290)
T 2bbs_A 57 INFKIERGQLLAVAGSTGAGKT 78 (290)
T ss_dssp EEEEECTTCEEEEEESTTSSHH
T ss_pred eEEEEcCCCEEEEECCCCCcHH
Confidence 4588999999999999998854
No 36
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=43.31 E-value=8 Score=32.31 Aligned_cols=26 Identities=15% Similarity=0.239 Sum_probs=21.2
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-+|+++|+-|.|..|.+=..+
T Consensus 25 vsl~i~~Ge~~~liG~nGsGKSTLlk 50 (262)
T 1b0u_A 25 VSLQARAGDVISIIGSSGSGKSTFLR 50 (262)
T ss_dssp EEEEECTTCEEEEECCTTSSHHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 45889999999999999999654444
No 37
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=43.18 E-value=7.8 Score=32.92 Aligned_cols=25 Identities=16% Similarity=0.232 Sum_probs=20.5
Q ss_pred CcceecCCcEEEEEeecCCCCeEEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
-++++-+|+++|+-|.|..|++=..
T Consensus 27 isl~i~~Ge~~~iiGpnGsGKSTLl 51 (275)
T 3gfo_A 27 INMNIKRGEVTAILGGNGVGKSTLF 51 (275)
T ss_dssp EEEEEETTSEEEEECCTTSSHHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHH
Confidence 3589999999999999998855433
No 38
>2pi2_E Replication protein A 14 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_B 2z6k_C
Probab=38.28 E-value=1.4e+02 Score=23.25 Aligned_cols=66 Identities=17% Similarity=0.219 Sum_probs=46.8
Q ss_pred cccEEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEeecCCCcceecCCcEEEEEeecCCCCeEEEeecccC
Q psy145 65 TTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVAARGSNPSRNQFIATKIYSD 139 (203)
Q Consensus 65 q~~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ldls~~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~ 139 (203)
-..|.++||+..-+++| .++.|+++ .|..|.+.+..+ .+--+++.|=|.|+=.....+.+......
T Consensus 43 Gk~VriVGkV~~~~~~G----~~~~l~s~----Dg~~VtV~l~~p-L~~~~~~~VEViG~V~~~~tI~~~~~~~f 108 (142)
T 2pi2_E 43 DKPVCFVGRLEKIHPTG----KMFILSDG----EGKNGTIELMEP-LDEEISGIVEVVGRVTAKATILCTSYVQF 108 (142)
T ss_dssp TCEEEEEEEEEEECTTS----SEEEEECT----TSCEEEEECSSC-CSSCCCSEEEEEEEECTTSCEEEEEEEEC
T ss_pred CCEEEEEEEEeEEcCCC----CEEEEEeC----CCcEEEEEeCCC-CCccCCCEEEEEEEECCCCcEEEEEEEec
Confidence 57899999999764344 46777765 468888888752 11235999999999666677887775443
No 39
>3kf8_B Protein TEN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=36.73 E-value=1.5e+02 Score=23.04 Aligned_cols=84 Identities=7% Similarity=0.136 Sum_probs=59.1
Q ss_pred ccccCccCccccEEEEEEEeeCCCCCCCCcceeEEEee--ccCCCceEEEeecCC-----CcceecCCcEEEEEeecCCC
Q psy145 56 LLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGD--EVTSGGRSISLKLPE-----TGVAVFPGQIVAARGSNPSR 128 (203)
Q Consensus 56 ef~~~~~~sq~~v~vvGRI~~Ds~egkLn~~Sv~LEgs--r~~g~G~rV~Ldls~-----~~~SLFPGQIVavkG~N~~G 128 (203)
+|-..+....+.|...|+|..-.. +.+.+.|+-- --.++...+..|+.. +.=.+-||++|=+.|.- +|
T Consensus 14 ~FP~aS~s~p~kVR~L~QVisYd~----~sa~L~l~~~p~~p~ss~~tv~VdI~~vL~~i~~~~~~vG~~VNI~Gyy-nG 88 (123)
T 3kf8_B 14 EFPEASISNPERLRILAQVKDFIP----HESTIVIDKVPTITSEQSTYINICIFNLLEACSSRVLVPGTLVNIDAFY-DG 88 (123)
T ss_dssp HCTTCBTTBCEEEEEEEEEEEEEG----GGTEEEEECCGGGCCSCCCCEEEECTTTTTTSCGGGGSTTCEEEEEEEE-CS
T ss_pred hCccccccCCceEEEEEEEEEEcC----CCcEEEEEecCCCCCCCCeEEEEEHHHHHhhcCccccccceEEEEEEEe-cC
Confidence 466667778888999999987541 1223334332 112235668888776 66778999999999976 79
Q ss_pred CeEEEeecccCCCCCC
Q psy145 129 NQFIATKIYSDASLPL 144 (203)
Q Consensus 129 ~~fvV~eI~~~p~lp~ 144 (203)
+.+-|=+||+.-...+
T Consensus 89 e~i~~i~i~~vNgs~~ 104 (123)
T 3kf8_B 89 ESINPVDIYEVNGANF 104 (123)
T ss_dssp SCEEEEEEEECCGGGC
T ss_pred ccccEEEEEeecccce
Confidence 9999999998765444
No 40
>3kf8_A Protein STN1; OB fold; 2.40A {Candida tropicalis mya-3404}
Probab=35.76 E-value=63 Score=27.34 Aligned_cols=74 Identities=20% Similarity=0.257 Sum_probs=44.6
Q ss_pred ccEEEEEEEeeCCCCCC----CCcceeEEEeeccCCCceEEEeecCC-------Ccce-ecCCcEEEEEeecCC------
Q psy145 66 TEITAIGRIVCDTSDGK----LNAASVLLEGDEVTSGGRSISLKLPE-------TGVA-VFPGQIVAARGSNPS------ 127 (203)
Q Consensus 66 ~~v~vvGRI~~Ds~egk----Ln~~Sv~LEgsr~~g~G~rV~Ldls~-------~~~S-LFPGQIVavkG~N~~------ 127 (203)
..|.++|+|+....-.+ -|.+=++|.-++-.|.-..+.+.++. -.++ .-+|.+|-++|.-.+
T Consensus 86 ~~V~IvG~VVg~~~k~~r~~~~~~~~~~l~IDDsSG~~s~i~~k~~~~~~~~~gl~l~~~~~G~iV~VkG~i~~~r~~~~ 165 (220)
T 3kf8_A 86 NQINIFGKIVYEQYKEKEFNGVEESYVILVISDFIGIDSKIRVRLSQEQFKEVGLTLDKKNYGKIVELEGEIYNWYDSIN 165 (220)
T ss_dssp CEEEEEEEEEEEEEECCBCSSCBCCEEEEEEECCCSSSCEEEEEEEHHHHHTTTCCTTSCCTTCEEEEEEEEEECCCSTT
T ss_pred EEEEEEEEEEEEEEEeccccccccceEEEEEeCCCCCCceEEEEecHHHhhccCccccccCCCeEEEEEEEEEeeccccc
Confidence 46889999998641111 12333666655554443355555553 2344 679999999998432
Q ss_pred -----CCeEEEeecccC
Q psy145 128 -----RNQFIATKIYSD 139 (203)
Q Consensus 128 -----G~~fvV~eI~~~ 139 (203)
-..|.|++|--.
T Consensus 166 ~~~~~~rei~ve~i~vl 182 (220)
T 3kf8_A 166 VSKKPDRELKVSKITVL 182 (220)
T ss_dssp TTSCCCEEEEEEEEEEE
T ss_pred cccccceEEEEEEEEEe
Confidence 147888877443
No 41
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=32.88 E-value=2.2e+02 Score=27.20 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=18.5
Q ss_pred ceecCCcEEEEEeec--CCCCeEEEe
Q psy145 111 VAVFPGQIVAARGSN--PSRNQFIAT 134 (203)
Q Consensus 111 ~SLFPGQIVavkG~N--~~G~~fvV~ 134 (203)
=.+.+|+||++-|.. .+|+++.-.
T Consensus 375 ~~~~aGdIv~i~gl~~~~~GdTl~~~ 400 (704)
T 2rdo_7 375 KEVRAGDIAAAIGLKDVTTGDTLCDP 400 (704)
T ss_pred ceeCCCCEEEEeCcccCccCCEEeCC
Confidence 468999999999863 368887753
No 42
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=32.69 E-value=19 Score=28.53 Aligned_cols=29 Identities=14% Similarity=0.149 Sum_probs=19.5
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeecc
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
-++++-+|+++++-|-|.+|++=+++.|.
T Consensus 20 ~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 20 GSMLKSVGVILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp --CCEECCCEEEEECSCC----CHHHHHH
T ss_pred CCcccCCCCEEEEECCCCCCHHHHHHHHH
Confidence 45788999999999999999876666555
No 43
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=32.44 E-value=14 Score=28.94 Aligned_cols=26 Identities=12% Similarity=0.208 Sum_probs=17.9
Q ss_pred ceecCCcEEEEEeecCCCCeEEEeec
Q psy145 111 VAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 111 ~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++.+|+++++-|.|..|++=..+-|
T Consensus 15 ~~i~~Gei~~l~GpnGsGKSTLl~~l 40 (207)
T 1znw_A 15 QPAAVGRVVVLSGPSAVGKSTVVRCL 40 (207)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHH
Confidence 37899999999999999966554443
No 44
>3fdx_A Putative filament protein / universal stress PROT; structural genomics, APC60640.1, universal protein F, PSI-2; HET: MSE ATP; 1.58A {Klebsiella pneumoniae subsp} PDB: 3fh0_A*
Probab=31.52 E-value=49 Score=23.33 Aligned_cols=32 Identities=13% Similarity=0.159 Sum_probs=28.0
Q ss_pred cceEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 159 KLRVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 159 ~l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
.....+..|.+...+++++.++..|.+|+-..
T Consensus 84 ~v~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 115 (143)
T 3fdx_A 84 RMHFHVAEGSPKDKILALAKSLPADLVIIASH 115 (143)
T ss_dssp GEEEEEEESCHHHHHHHHHHHTTCSEEEEESS
T ss_pred ceEEEEEecChHHHHHHHHHHhCCCEEEEeCC
Confidence 45777889999999999999999999998764
No 45
>3hgm_A Universal stress protein TEAD; rossman fold, signaling protein; HET: ATP; 1.90A {Halomonas elongata} SCOP: c.26.2.0
Probab=31.01 E-value=52 Score=23.22 Aligned_cols=30 Identities=13% Similarity=0.103 Sum_probs=26.9
Q ss_pred eEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 161 RVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 161 ~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
...+..|.+...+++++.+...|.+|+-..
T Consensus 90 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 119 (147)
T 3hgm_A 90 RAFVKGGRPSRTIVRFARKRECDLVVIGAQ 119 (147)
T ss_dssp EEEEEESCHHHHHHHHHHHTTCSEEEECSS
T ss_pred EEEEecCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 788889999999999999999999998654
No 46
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=30.86 E-value=28 Score=29.30 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=19.9
Q ss_pred ChHHHHHHHHhcCCCeEEEeee
Q psy145 169 PLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~ 190 (203)
.+..+++.+.+.+||.+|+||-
T Consensus 49 ~l~~lv~~~~~~~~D~vliaGD 70 (336)
T 2q8u_A 49 ALDKVVEEAEKREVDLILLTGD 70 (336)
T ss_dssp HHHHHHHHHHHHTCSEEEEESC
T ss_pred HHHHHHHHHHHhCCCEEEECCc
Confidence 4678999999999999999996
No 47
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=30.28 E-value=77 Score=30.02 Aligned_cols=24 Identities=4% Similarity=0.004 Sum_probs=18.4
Q ss_pred eecCCcEEEEEeec--CCCCeEEEee
Q psy145 112 AVFPGQIVAARGSN--PSRNQFIATK 135 (203)
Q Consensus 112 SLFPGQIVavkG~N--~~G~~fvV~e 135 (203)
.+.||+||++.|.. .+|+++...+
T Consensus 341 ~a~aG~iv~i~gl~~~~~Gdtl~~~~ 366 (665)
T 2dy1_A 341 EAEAGFVLGVPKAEGLHRGMVLWQGE 366 (665)
T ss_dssp CEETTCEEEESSCTTCCTTCEEESSS
T ss_pred EECCCCEEEEeCCccCccCCEEecCC
Confidence 57899999999864 3788887543
No 48
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=30.24 E-value=17 Score=28.41 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=21.9
Q ss_pred eecCCcEEEEEeecCCCCeEEEeecc
Q psy145 112 AVFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 112 SLFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
.+-+|++|++-|.|.+|++-.+..|.
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 68899999999999999876666554
No 49
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=30.04 E-value=17 Score=33.62 Aligned_cols=23 Identities=13% Similarity=0.167 Sum_probs=18.8
Q ss_pred CcceecCCcEEEEEeecCCCCeE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQF 131 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~f 131 (203)
.++++.+|++||+-|.|..|++=
T Consensus 305 ~~~~i~~Ge~~~i~G~NGsGKST 327 (538)
T 1yqt_A 305 EPGEIKKGEVIGIVGPNGIGKTT 327 (538)
T ss_dssp CCEEEETTCEEEEECCTTSSHHH
T ss_pred CccccCCCCEEEEECCCCCCHHH
Confidence 45667899999999999988543
No 50
>2z08_A Universal stress protein family; uncharacterized conserved protein, structural genomics, unknown function, NPPSFA; HET: ATP; 1.55A {Thermus thermophilus} SCOP: c.26.2.4 PDB: 1wjg_A* 2z09_A* 2z3v_A
Probab=28.97 E-value=54 Score=23.14 Aligned_cols=32 Identities=16% Similarity=0.104 Sum_probs=27.4
Q ss_pred cceEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 159 KLRVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 159 ~l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
+....+..|.+...+++++.+...|.+|+-..
T Consensus 77 ~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 108 (137)
T 2z08_A 77 KEDALLLEGVPAEAILQAARAEKADLIVMGTR 108 (137)
T ss_dssp GGGEEEEESSHHHHHHHHHHHTTCSEEEEESS
T ss_pred ccEEEEEecCHHHHHHHHHHHcCCCEEEECCC
Confidence 45667788999999999999999999998654
No 51
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=28.61 E-value=15 Score=29.36 Aligned_cols=28 Identities=7% Similarity=-0.062 Sum_probs=17.7
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++++-+|++|++-|.|..|+.=.++-|
T Consensus 16 isl~i~~G~~~~lvGpsGsGKSTLl~~L 43 (218)
T 1z6g_A 16 PRGSMNNIYPLVICGPSGVGKGTLIKKL 43 (218)
T ss_dssp ------CCCCEEEECSTTSSHHHHHHHH
T ss_pred CceecCCCCEEEEECCCCCCHHHHHHHH
Confidence 4577889999999999999966544443
No 52
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=28.45 E-value=20 Score=28.85 Aligned_cols=25 Identities=20% Similarity=0.196 Sum_probs=20.2
Q ss_pred ecCCcEEEEEeecCCCCeEEEeecc
Q psy145 113 VFPGQIVAARGSNPSRNQFIATKIY 137 (203)
Q Consensus 113 LFPGQIVavkG~N~~G~~fvV~eI~ 137 (203)
+-+|++|++-|.|.+|.+-..+-|.
T Consensus 19 i~~Ge~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 19 IDTNTIVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp HHHCSEEEEECCTTSSTTHHHHHHH
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHh
Confidence 4689999999999999876665443
No 53
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=28.19 E-value=19 Score=34.00 Aligned_cols=24 Identities=13% Similarity=0.176 Sum_probs=19.1
Q ss_pred CcceecCCcEEEEEeecCCCCeEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fv 132 (203)
.++++-+|++||+-|.|.+|.+=.
T Consensus 375 ~~~~v~~Gei~~i~G~NGsGKSTL 398 (607)
T 3bk7_A 375 EPGEIRKGEVIGIVGPNGIGKTTF 398 (607)
T ss_dssp CCEEEETTCEEEEECCTTSSHHHH
T ss_pred cccccCCCCEEEEECCCCCCHHHH
Confidence 456678999999999999885433
No 54
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=27.86 E-value=23 Score=30.48 Aligned_cols=76 Identities=14% Similarity=0.088 Sum_probs=45.8
Q ss_pred cceecCCcEEEEEeecCCCCeEEEeecccCCCCCCCCCcccccccccc----ccceEEEE--cCcChHHHHHHHHhcCCC
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEM----YKLRVSYE--KGLPLADYLVNVFEKSYN 183 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p~lp~p~s~~~~~~~~~~----~~l~i~~A--~GPpL~DLL~~v~~~~Pd 183 (203)
++++-+|++|++-|.|.+|++=...-|....+. ..-....+...+. .+-.+-+. -|..-..+|..+...+||
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~--~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~p~ 242 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPK--EERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMRPD 242 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCT--TSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSCCS
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcC--CCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhCCC
Confidence 356679999999999999977655545443221 1111111111111 12233333 567777888888889999
Q ss_pred eEEE
Q psy145 184 SAFI 187 (203)
Q Consensus 184 vLvl 187 (203)
+|+|
T Consensus 243 ilil 246 (330)
T 2pt7_A 243 RIIL 246 (330)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9988
No 55
>3tnj_A Universal stress protein (USP); structural genomics, PSI-biology, midwest center for structu genomics, MCSG, chaperone; HET: AMP; 2.00A {Nitrosomonas europaea} PDB: 2pfs_A*
Probab=27.54 E-value=64 Score=22.97 Aligned_cols=31 Identities=6% Similarity=-0.022 Sum_probs=27.6
Q ss_pred ceEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 160 LRVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 160 l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
....+..|.+...+++++.++..|.+|+-..
T Consensus 88 ~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 118 (150)
T 3tnj_A 88 AHRWLVWGEPREEIIRIAEQENVDLIVVGSH 118 (150)
T ss_dssp GGEEEEESCHHHHHHHHHHHTTCSEEEEEEC
T ss_pred ceEEEecCCHHHHHHHHHHHcCCCEEEEecC
Confidence 5778889999999999999999999998754
No 56
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=27.41 E-value=20 Score=30.05 Aligned_cols=25 Identities=24% Similarity=0.243 Sum_probs=20.0
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++- |+++++-|.|.+|++=..+
T Consensus 24 vsl~i~-Ge~~~i~G~NGsGKSTLlk 48 (263)
T 2pjz_A 24 INLEVN-GEKVIILGPNGSGKTTLLR 48 (263)
T ss_dssp EEEEEC-SSEEEEECCTTSSHHHHHH
T ss_pred eeEEEC-CEEEEEECCCCCCHHHHHH
Confidence 458899 9999999999988654433
No 57
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=27.15 E-value=99 Score=29.44 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=19.8
Q ss_pred ceecCCcEEEEEeec--CCCCeEEEee
Q psy145 111 VAVFPGQIVAARGSN--PSRNQFIATK 135 (203)
Q Consensus 111 ~SLFPGQIVavkG~N--~~G~~fvV~e 135 (203)
=++.+|+||++-|.. .+|+++.-.+
T Consensus 367 ~~~~aGdI~~i~gl~~~~~Gdtl~~~~ 393 (691)
T 1dar_A 367 EELKAGDLGAVVGLKETITGDTLVGED 393 (691)
T ss_dssp SEEETTCEEEEECCSSCCTTCEEEETT
T ss_pred ceecCCCEEEEeCcccCccCCEEecCC
Confidence 468999999999963 3788888644
No 58
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=27.12 E-value=40 Score=28.47 Aligned_cols=23 Identities=9% Similarity=0.062 Sum_probs=19.9
Q ss_pred ChHHHHHHHHhcCCCeEEEeeeh
Q psy145 169 PLADYLVNVFEKSYNSAFITTVA 191 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~~ 191 (203)
.+..+++.+.+++||.+|++|--
T Consensus 28 ~~~~~~~~~~~~~~D~vl~~GDl 50 (333)
T 1ii7_A 28 AFKNALEIAVQENVDFILIAGDL 50 (333)
T ss_dssp HHHHHHHHHHHTTCSEEEEESCS
T ss_pred HHHHHHHHHHhcCCCEEEECCCc
Confidence 56788999999999999999964
No 59
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=26.53 E-value=49 Score=25.65 Aligned_cols=24 Identities=0% Similarity=0.016 Sum_probs=18.0
Q ss_pred ChHHHHHHHHhcCCCeEEEeeehh
Q psy145 169 PLADYLVNVFEKSYNSAFITTVAD 192 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~~~ 192 (203)
|..++++.+++++||++.|+....
T Consensus 57 p~e~lv~aa~~~~~diV~lS~~~~ 80 (161)
T 2yxb_A 57 TPEQVAMAAVQEDVDVIGVSILNG 80 (161)
T ss_dssp CHHHHHHHHHHTTCSEEEEEESSS
T ss_pred CHHHHHHHHHhcCCCEEEEEeech
Confidence 667788888888888888777544
No 60
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=26.20 E-value=28 Score=32.28 Aligned_cols=26 Identities=15% Similarity=0.253 Sum_probs=21.1
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||++||+-|.|.+|++=.++
T Consensus 363 isl~i~~G~~~~ivG~sGsGKSTLl~ 388 (595)
T 2yl4_A 363 FSLSIPSGSVTALVGPSGSGKSTVLS 388 (595)
T ss_dssp EEEEECTTCEEEEECCTTSSSTHHHH
T ss_pred eEEEEcCCCEEEEECCCCCCHHHHHH
Confidence 35888999999999999998654444
No 61
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=26.09 E-value=49 Score=24.83 Aligned_cols=27 Identities=7% Similarity=0.185 Sum_probs=21.7
Q ss_pred cChHHHHHHHHhcCCCeEEEeeehhhh
Q psy145 168 LPLADYLVNVFEKSYNSAFITTVADFH 194 (203)
Q Consensus 168 PpL~DLL~~v~~~~PdvLvlt~~~~~~ 194 (203)
.|..++++.+++++||++.|+.....|
T Consensus 41 ~p~e~~v~~a~~~~~d~v~lS~~~~~~ 67 (137)
T 1ccw_A 41 SPQELFIKAAIETKADAILVSSLYGQG 67 (137)
T ss_dssp ECHHHHHHHHHHHTCSEEEEEECSSTH
T ss_pred CCHHHHHHHHHhcCCCEEEEEecCcCc
Confidence 378899999999999999998865443
No 62
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=25.85 E-value=36 Score=29.65 Aligned_cols=23 Identities=9% Similarity=0.072 Sum_probs=20.1
Q ss_pred ChHHHHHHHHhcCCCeEEEeeeh
Q psy145 169 PLADYLVNVFEKSYNSAFITTVA 191 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~~ 191 (203)
.+..|++.+.+.+||.+|+||--
T Consensus 31 ~l~~l~~~~~~~~~D~vliaGDl 53 (379)
T 3tho_B 31 ALDKVVEEAEKREVDLILLTGDL 53 (379)
T ss_dssp HHHHHHHHHHHHTCSEEEECSCC
T ss_pred HHHHHHHHHHhcCCCEEEECCCc
Confidence 56789999999999999999963
No 63
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=25.51 E-value=1.2e+02 Score=28.79 Aligned_cols=35 Identities=23% Similarity=0.273 Sum_probs=23.2
Q ss_pred ceecCCcEEEEEeec--CCCCeEEEee-cccCCCCCCC
Q psy145 111 VAVFPGQIVAARGSN--PSRNQFIATK-IYSDASLPLS 145 (203)
Q Consensus 111 ~SLFPGQIVavkG~N--~~G~~fvV~e-I~~~p~lp~p 145 (203)
=.+.+|+|||+-|.. .+|+++.-.+ -+.+++.++|
T Consensus 367 ~~~~aGdI~~i~gl~~~~~GdTl~~~~~~~~~~~~~~~ 404 (693)
T 2xex_A 367 DTVYSGDIAAAVGLKDTGTGDTLCGEKNDIILESMEFP 404 (693)
T ss_dssp SEEETTCEEEEESCSSCCTTCEEEETTCCEECCCCSSC
T ss_pred cccCcCCEEEEeCcccCccCCEEecCCCccccCCcCCC
Confidence 468999999999963 3688887643 2333444443
No 64
>1tq8_A Hypothetical protein RV1636; MTCY01B2.28, structural target, NYSGXRC, PSI, protein structure initiative; 2.40A {Mycobacterium tuberculosis} SCOP: c.26.2.4
Probab=25.45 E-value=73 Score=23.69 Aligned_cols=31 Identities=13% Similarity=0.073 Sum_probs=27.5
Q ss_pred ceEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 160 LRVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 160 l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
....+..|.+...+++++.+...|.+|+-..
T Consensus 98 v~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~ 128 (163)
T 1tq8_A 98 VEERPIVGAPVDALVNLADEEKADLLVVGNV 128 (163)
T ss_dssp EEEEEECSSHHHHHHHHHHHTTCSEEEEECC
T ss_pred EEEEEecCCHHHHHHHHHHhcCCCEEEECCC
Confidence 6677889999999999999999999998754
No 65
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=25.41 E-value=14 Score=32.01 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=20.0
Q ss_pred CcceecCCcEEEEEeecCCCCeEEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIA 133 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV 133 (203)
-++++-||++||+-|.|..|++=.+
T Consensus 73 isl~i~~Ge~vaivG~sGsGKSTLl 97 (306)
T 3nh6_A 73 VSFTVMPGQTLALVGPSGAGKSTIL 97 (306)
T ss_dssp EEEEECTTCEEEEESSSCHHHHHHH
T ss_pred eeEEEcCCCEEEEECCCCchHHHHH
Confidence 3588999999999999987755433
No 66
>1q77_A Hypothetical protein AQ_178; structural genomics, universal stress protein, PSI, protein structure initiative; 2.70A {Aquifex aeolicus} SCOP: c.26.2.4
Probab=25.00 E-value=62 Score=22.75 Aligned_cols=32 Identities=19% Similarity=0.057 Sum_probs=27.2
Q ss_pred cceEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 159 KLRVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 159 ~l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
+....+..|.+...+++++.+...|.+|+-+.
T Consensus 87 ~~~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 118 (138)
T 1q77_A 87 IPGVEYRIGPLSEEVKKFVEGKGYELVVWACY 118 (138)
T ss_dssp CCCEEEECSCHHHHHHHHHTTSCCSEEEECSC
T ss_pred cceEEEEcCCHHHHHHHHHHhcCCCEEEEeCC
Confidence 46667788999999999999999999998654
No 67
>3dui_A Beta-galactoside-binding lectin; carbohydrate-binding proteins, galactosides, galectin, acetylation, sugar binding protein; 2.10A {Gallus gallus} SCOP: b.29.1.3
Probab=24.81 E-value=50 Score=24.99 Aligned_cols=26 Identities=27% Similarity=0.599 Sum_probs=21.2
Q ss_pred CcceecCCcEEEEEee-cCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGS-NPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~-N~~G~~fvV~ 134 (203)
+..+|-||+.|.++|+ ++..+.|.|.
T Consensus 9 ~~~~l~~G~~i~I~G~v~~~a~rF~In 35 (135)
T 3dui_A 9 TNLGLKPGQRLTVKGIIAPNAKSFVMN 35 (135)
T ss_dssp ECCCCCTTCCEEEEEEECTTCCBEEEE
T ss_pred EeCCCCCCCEEEEEEEECCCCCEEEEE
Confidence 4578999999999998 4456789887
No 68
>3s3t_A Nucleotide-binding protein, universal stress PROT family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: ATP; 1.90A {Lactobacillus plantarum} SCOP: c.26.2.0
Probab=24.54 E-value=66 Score=22.70 Aligned_cols=32 Identities=9% Similarity=0.098 Sum_probs=27.8
Q ss_pred cceEEEEcCcChHHHHH-HHHhcCCCeEEEeee
Q psy145 159 KLRVSYEKGLPLADYLV-NVFEKSYNSAFITTV 190 (203)
Q Consensus 159 ~l~i~~A~GPpL~DLL~-~v~~~~PdvLvlt~~ 190 (203)
+.+..+..|.+...+++ ++.+...|.+|+...
T Consensus 85 ~~~~~~~~g~~~~~I~~~~a~~~~~dliV~G~~ 117 (146)
T 3s3t_A 85 NLKTEISYGIPKHTIEDYAKQHPEIDLIVLGAT 117 (146)
T ss_dssp CCEEEEEEECHHHHHHHHHHHSTTCCEEEEESC
T ss_pred ceEEEEecCChHHHHHHHHHhhcCCCEEEECCC
Confidence 56778889999999999 999999999998654
No 69
>2gm3_A Unknown protein; AT3G01520, putative ethylene-responsive protein, USP domain, nucleotide binding domain, AMP; HET: MSE AMP; 2.46A {Arabidopsis thaliana} SCOP: c.26.2.4
Probab=24.30 E-value=73 Score=23.52 Aligned_cols=32 Identities=9% Similarity=-0.074 Sum_probs=27.2
Q ss_pred cceEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 159 KLRVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 159 ~l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
+....+..|.+...+++++.+...|.+|+-+.
T Consensus 102 ~~~~~v~~G~~~~~I~~~a~~~~~DLIVmG~~ 133 (175)
T 2gm3_A 102 GCEAWIKTGDPKDVICQEVKRVRPDFLVVGSR 133 (175)
T ss_dssp EEEEEEEESCHHHHHHHHHHHHCCSEEEEEEC
T ss_pred ceEEEEecCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 35566778999999999999999999999764
No 70
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=24.28 E-value=24 Score=27.05 Aligned_cols=27 Identities=15% Similarity=0.071 Sum_probs=23.2
Q ss_pred eecCCcEEEEEeecCCCCeEEEeeccc
Q psy145 112 AVFPGQIVAARGSNPSRNQFIATKIYS 138 (203)
Q Consensus 112 SLFPGQIVavkG~N~~G~~fvV~eI~~ 138 (203)
.+-+|+++++-|.|.+|++-.+..|..
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g 47 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAV 47 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999887777643
No 71
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=24.28 E-value=43 Score=30.56 Aligned_cols=26 Identities=19% Similarity=0.211 Sum_probs=21.5
Q ss_pred ChHHHHHHHHhcCCCeEEEeeehhhhc
Q psy145 169 PLADYLVNVFEKSYNSAFITTVADFHR 195 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~~~~~~ 195 (203)
.+..|++.+.+.+||.+||||-- ||+
T Consensus 59 ~l~~ll~~~~~~~~D~VliaGDl-fd~ 84 (431)
T 3t1i_A 59 TLDEILRLAQENEVDFILLGGDL-FHE 84 (431)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCC-BSS
T ss_pred HHHHHHHHHhhcCCCEEEEcCcc-ccC
Confidence 35789999999999999999964 454
No 72
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=24.26 E-value=27 Score=32.32 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=20.6
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
-++++-||++||+-|.|.+|++=.++
T Consensus 362 v~~~i~~G~~~~ivG~sGsGKSTLl~ 387 (582)
T 3b60_A 362 INLKIPAGKTVALVGRSGSGKSTIAS 387 (582)
T ss_dssp EEEEECTTCEEEEEECTTSSHHHHHH
T ss_pred eeEEEcCCCEEEEECCCCCCHHHHHH
Confidence 35888999999999999988554333
No 73
>1mjh_A Protein (ATP-binding domain of protein MJ0577); hypothetical protein, structural genomics, functional assignment; HET: ATP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.26.2.4
Probab=24.26 E-value=65 Score=23.34 Aligned_cols=32 Identities=9% Similarity=0.148 Sum_probs=27.0
Q ss_pred cceEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 159 KLRVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 159 ~l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
+....+..|.+...+++++.+.+.|.+|+-..
T Consensus 98 ~~~~~v~~G~~~~~I~~~a~~~~~dlIV~G~~ 129 (162)
T 1mjh_A 98 KVKDIIVVGIPHEEIVKIAEDEGVDIIIMGSH 129 (162)
T ss_dssp EEEEEEEEECHHHHHHHHHHHTTCSEEEEESC
T ss_pred ceEEEEcCCCHHHHHHHHHHHcCCCEEEEcCC
Confidence 45566778999999999999999999998754
No 74
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=24.05 E-value=19 Score=30.08 Aligned_cols=28 Identities=7% Similarity=0.029 Sum_probs=21.5
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
+..++-||++|++-|.|.+|++=...-|
T Consensus 18 ~~i~i~~g~~v~i~Gp~GsGKSTll~~l 45 (261)
T 2eyu_A 18 LELCHRKMGLILVTGPTGSGKSTTIASM 45 (261)
T ss_dssp HHGGGCSSEEEEEECSTTCSHHHHHHHH
T ss_pred HHHhhCCCCEEEEECCCCccHHHHHHHH
Confidence 5567889999999999998865444433
No 75
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=23.99 E-value=26 Score=31.37 Aligned_cols=22 Identities=23% Similarity=0.302 Sum_probs=19.2
Q ss_pred CcceecCCcEEEEEeecCCCCe
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~ 130 (203)
=++++-+|+++|+-|.|..|++
T Consensus 47 vsl~i~~Gei~~IiGpnGaGKS 68 (366)
T 3tui_C 47 VSLHVPAGQIYGVIGASGAGKS 68 (366)
T ss_dssp EEEEECTTCEEEEECCTTSSHH
T ss_pred eEEEEcCCCEEEEEcCCCchHH
Confidence 3588999999999999998855
No 76
>2k50_A Replication factor A related protein; uncharacterized protein, structural genomics, PSI-2; NMR {Methanothermobacterthermautotrophicus str}
Probab=23.98 E-value=1.9e+02 Score=20.45 Aligned_cols=59 Identities=14% Similarity=0.107 Sum_probs=32.6
Q ss_pred ccEEEEEEEeeCCCC----CCCCcceeEEEeeccCCCceEEEeecCC-Cc---ceecCCcEEEEEeec
Q psy145 66 TEITAIGRIVCDTSD----GKLNAASVLLEGDEVTSGGRSISLKLPE-TG---VAVFPGQIVAARGSN 125 (203)
Q Consensus 66 ~~v~vvGRI~~Ds~e----gkLn~~Sv~LEgsr~~g~G~rV~Ldls~-~~---~SLFPGQIVavkG~N 125 (203)
+.+.++|+|..-..- .|=....-+++..-..+.| .|++-+=+ .. -.|=||++|.++|.-
T Consensus 17 ~~v~i~~~V~~~~~~~~~~~k~G~~~~~~~~~l~D~TG-~I~~t~w~~~~~~~~~l~~G~vv~i~g~~ 83 (115)
T 2k50_A 17 AETPVTGRVMKISSPRTFTTRKGREGKLANVIIADDTG-ELRAVFWTENIKLLKKFREGDVIRIKDVN 83 (115)
T ss_dssp CEEEEEEEEEEECCCEECCCTTSSCCEEEEEEEEETTE-EEEEEEETTGGGGGGTCCTTSEEEEEEEE
T ss_pred CEeEEEEEEEECCCceEEEcCCCCEEEEEEEEEEeCCC-eEEEEEeCchhhhhhcCCCCCEEEEEeeE
Confidence 567889999876311 1111102233332222234 67766544 21 267899999999976
No 77
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=23.74 E-value=27 Score=32.29 Aligned_cols=28 Identities=25% Similarity=0.290 Sum_probs=22.1
Q ss_pred CCCcceecCCcEEEEEeecCCCCeEEEe
Q psy145 107 PETGVAVFPGQIVAARGSNPSRNQFIAT 134 (203)
Q Consensus 107 s~~~~SLFPGQIVavkG~N~~G~~fvV~ 134 (203)
++-++++-||++||+-|.|.+|++=.++
T Consensus 360 ~~i~l~i~~G~~~~ivG~sGsGKSTll~ 387 (582)
T 3b5x_A 360 SHVSFSIPQGKTVALVGRSGSGKSTIAN 387 (582)
T ss_pred ccceEEECCCCEEEEECCCCCCHHHHHH
Confidence 3356889999999999999988654443
No 78
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=23.71 E-value=20 Score=31.04 Aligned_cols=23 Identities=9% Similarity=0.034 Sum_probs=19.6
Q ss_pred cceecCCcEEEEEeecCCCCeEE
Q psy145 110 GVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~fv 132 (203)
.+++-||++||+-|.|.+|+.-.
T Consensus 120 sl~i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 120 LKGIPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp HHTCTTCSEEEEECSSSSSHHHH
T ss_pred eEEecCCCEEEEECCCCCcHHHH
Confidence 57889999999999999996543
No 79
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=23.67 E-value=27 Score=26.27 Aligned_cols=27 Identities=22% Similarity=0.236 Sum_probs=21.0
Q ss_pred eecCCcEEEEEeecCCCCeEEEeeccc
Q psy145 112 AVFPGQIVAARGSNPSRNQFIATKIYS 138 (203)
Q Consensus 112 SLFPGQIVavkG~N~~G~~fvV~eI~~ 138 (203)
.+-+|++|++-|.|.+|++-.++.|..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~ 31 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALAN 31 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHh
Confidence 466899999999999997766665543
No 80
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=23.53 E-value=2.8e+02 Score=27.07 Aligned_cols=22 Identities=14% Similarity=0.206 Sum_probs=16.5
Q ss_pred ceecCCcEEEEEeecCC--C-CeEE
Q psy145 111 VAVFPGQIVAARGSNPS--R-NQFI 132 (203)
Q Consensus 111 ~SLFPGQIVavkG~N~~--G-~~fv 132 (203)
=.+.+|+|||+.|.... | +++.
T Consensus 446 ~~~~aGdI~ai~gl~~~~~~t~Tl~ 470 (842)
T 1n0u_A 446 DDCPAGNIIGLVGIDQFLLKTGTLT 470 (842)
T ss_dssp SEEETTCEEEEESCTTTCCSSEEEE
T ss_pred ceeCCCCEEEEEccccceecceeec
Confidence 36899999999998654 4 4554
No 81
>1jmv_A USPA, universal stress protein A; chaperone; 1.85A {Haemophilus influenzae} SCOP: c.26.2.4
Probab=23.43 E-value=72 Score=22.42 Aligned_cols=30 Identities=3% Similarity=-0.278 Sum_probs=25.9
Q ss_pred eEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 161 RVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 161 ~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
...+..|.+...+++++.+.+.|.+|+-..
T Consensus 82 ~~~~~~g~~~~~I~~~a~~~~~dliV~G~~ 111 (141)
T 1jmv_A 82 EKLSGSGDLGQVLSDAIEQYDVDLLVTGHH 111 (141)
T ss_dssp CEEEEEECHHHHHHHHHHHTTCCEEEEEEC
T ss_pred EEEEecCCHHHHHHHHHHhcCCCEEEEeCC
Confidence 566778999999999999999999988754
No 82
>3kdf_A Replication protein A 14 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 1quq_B 1l1o_A
Probab=23.40 E-value=2.4e+02 Score=21.18 Aligned_cols=65 Identities=18% Similarity=0.274 Sum_probs=45.8
Q ss_pred ccEEEEEEEeeCCCCCCCCcceeEEEeeccCCCceEEEeecCC-CcceecCCcEEEEEeecCCCCeEEEeecccCC
Q psy145 66 TEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPE-TGVAVFPGQIVAARGSNPSRNQFIATKIYSDA 140 (203)
Q Consensus 66 ~~v~vvGRI~~Ds~egkLn~~Sv~LEgsr~~g~G~rV~Ldls~-~~~SLFPGQIVavkG~N~~G~~fvV~eI~~~p 140 (203)
..|.++||+..-.++|+ ++.|+++ .|..|.+.|.. -..-+ +..|=+.|+=.....+.+.......
T Consensus 23 k~VrivGkV~~~~~~g~----~~~l~s~----Dg~~Vtv~l~~p~~~~l--~~~vEViG~V~~~~tI~~~~~~~fg 88 (121)
T 3kdf_A 23 KPVCFVGRLEKIHPTGK----MFILSDG----EGKNGTIELMEPLDEEI--SGIVEVVGRVTAKATILCTSYVQFK 88 (121)
T ss_dssp CEEEEEEEEEEECTTSS----EEEEECT----TSCEEEEECSSCCSSCC--CSEEEEEEEECTTSCEEEEEEEECC
T ss_pred CeEEEEEEEEEEcCCCC----EEEEEeC----CCCEEEEEeCCCCCccc--CcEEEEEEEECCCCeEEEEEEEecC
Confidence 78999999997543443 6667664 47889999987 23333 6699999996556677777765443
No 83
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=23.40 E-value=27 Score=26.49 Aligned_cols=26 Identities=4% Similarity=0.051 Sum_probs=18.6
Q ss_pred ceecCCcEEEEEeecCCCCeEEEeec
Q psy145 111 VAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 111 ~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++.=+|+++++-|.|.+|++=.++-|
T Consensus 2 ~~m~~g~ii~l~Gp~GsGKSTl~~~L 27 (205)
T 3tr0_A 2 NAMNKANLFIISAPSGAGKTSLVRAL 27 (205)
T ss_dssp ---CCCCEEEEECCTTSCHHHHHHHH
T ss_pred CcCCCCcEEEEECcCCCCHHHHHHHH
Confidence 34558999999999999976555544
No 84
>2wkk_A Galectin-2; sugar-binding protein, secreted, cell WALL, sugar binding, sugar binding protein, beta-galactoside binding lectin, fruiting BODY; HET: GAL NAG FUC; 1.50A {Coprinopsis cinerea} PDB: 1ulc_A* 1ul9_A* 1ule_A* 1ulf_A* 1ulg_A* 1uld_A*
Probab=22.44 E-value=67 Score=24.95 Aligned_cols=24 Identities=21% Similarity=0.227 Sum_probs=19.4
Q ss_pred ceecCCcEEEEEee--cCCCCeEEEe
Q psy145 111 VAVFPGQIVAARGS--NPSRNQFIAT 134 (203)
Q Consensus 111 ~SLFPGQIVavkG~--N~~G~~fvV~ 134 (203)
-.|-||+.|.++|+ ++..+.|.|.
T Consensus 15 ~gl~~G~~i~I~G~~~~~~a~rF~IN 40 (150)
T 2wkk_A 15 NDFKPESVAAIRSSAFNSKGGTTVFN 40 (150)
T ss_dssp EEECTTCEEEEECSCCCTTCCCEEEE
T ss_pred CCCcCCCEEEEEEEECCCCCCEEEEE
Confidence 35889999999993 5557889987
No 85
>1hlc_A Human lectin; HET: GAL BGC; 2.90A {Homo sapiens} SCOP: b.29.1.3
Probab=22.14 E-value=86 Score=23.49 Aligned_cols=25 Identities=20% Similarity=0.444 Sum_probs=20.4
Q ss_pred cceecCCcEEEEEee-cCCCCeEEEe
Q psy145 110 GVAVFPGQIVAARGS-NPSRNQFIAT 134 (203)
Q Consensus 110 ~~SLFPGQIVavkG~-N~~G~~fvV~ 134 (203)
..+|-||+.|.++|+ ++..+.|.|.
T Consensus 6 ~~gl~~G~~i~I~G~v~~~~~rF~In 31 (129)
T 1hlc_A 6 NMDMKPGSTLKITGSIADGTDGFVIN 31 (129)
T ss_dssp EEEECTTCEEEEEEEECTTCCBEEEE
T ss_pred cCCCCcCCEEEEEEEECCCCCEEEEE
Confidence 357899999999997 4566789886
No 86
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=21.93 E-value=59 Score=29.51 Aligned_cols=27 Identities=15% Similarity=0.215 Sum_probs=22.2
Q ss_pred ChHHHHHHHHhcCCCeEEEeeehhhhcc
Q psy145 169 PLADYLVNVFEKSYNSAFITTVADFHRA 196 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~~~~~~~ 196 (203)
.+..+++.+.+.+||.+||||-- ||+.
T Consensus 40 ~l~~lv~~~~~~~~D~VliaGDL-fd~~ 66 (417)
T 4fbw_A 40 SFNEILEIARERDVDMILLGGDI-FHDN 66 (417)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCC-BSSS
T ss_pred HHHHHHHHHHhcCCCEEEEcCcc-ccCC
Confidence 35789999999999999999975 5543
No 87
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=21.79 E-value=26 Score=28.10 Aligned_cols=28 Identities=14% Similarity=0.179 Sum_probs=19.2
Q ss_pred CcceecCCcEEEEEeecCCCCeEEEeec
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
-++++=+|.||++-|.|.+|.+-+++-|
T Consensus 18 isl~i~~g~iigI~G~~GsGKSTl~k~L 45 (245)
T 2jeo_A 18 LYFQSMRPFLIGVSGGTASGKSTVCEKI 45 (245)
T ss_dssp -----CCSEEEEEECSTTSSHHHHHHHH
T ss_pred eeccCCCCEEEEEECCCCCCHHHHHHHH
Confidence 4577889999999999999976655544
No 88
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=21.64 E-value=52 Score=30.63 Aligned_cols=26 Identities=15% Similarity=0.227 Sum_probs=21.4
Q ss_pred ChHHHHHHHHhcCCCeEEEeeehhhhc
Q psy145 169 PLADYLVNVFEKSYNSAFITTVADFHR 195 (203)
Q Consensus 169 pL~DLL~~v~~~~PdvLvlt~~~~~~~ 195 (203)
.+..|++.+.+.+||.+||||-- ||+
T Consensus 103 ~l~~lv~~~~~~~~D~VliaGDL-fd~ 128 (472)
T 4fbk_A 103 SFNEILEIARERDVDMILLGGDI-FHD 128 (472)
T ss_dssp HHHHHHHHHHHTTCSEEEECSCS-BSS
T ss_pred HHHHHHHHHHhcCCCEEEEcCcc-ccC
Confidence 35789999999999999999964 443
No 89
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=21.48 E-value=38 Score=31.48 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=20.0
Q ss_pred CcceecCCcEEEEEeecCCCCeEE
Q psy145 109 TGVAVFPGQIVAARGSNPSRNQFI 132 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~N~~G~~fv 132 (203)
=++++-||++||+-|.|.+|++=.
T Consensus 374 isl~i~~G~~~~ivG~sGsGKSTl 397 (598)
T 3qf4_B 374 ITFHIKPGQKVALVGPTGSGKTTI 397 (598)
T ss_dssp EEEECCTTCEEEEECCTTSSTTHH
T ss_pred eEEEEcCCCEEEEECCCCCcHHHH
Confidence 457889999999999999886543
No 90
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=21.44 E-value=32 Score=28.16 Aligned_cols=26 Identities=4% Similarity=0.109 Sum_probs=20.7
Q ss_pred ceecCCcEEEEEeecCCCCeEEEeec
Q psy145 111 VAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 111 ~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
++|-||+++++-|.|..|++-.+..|
T Consensus 30 ~~l~~G~~~~i~G~~G~GKTTl~~~i 55 (296)
T 1cr0_A 30 LGARGGEVIMVTSGSGMGKSTFVRQQ 55 (296)
T ss_dssp CSBCTTCEEEEEESTTSSHHHHHHHH
T ss_pred cCCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 67899999999999998865544433
No 91
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=21.37 E-value=55 Score=28.38 Aligned_cols=22 Identities=5% Similarity=0.002 Sum_probs=19.5
Q ss_pred hHHHHHHHHhcCCCeEEEeeeh
Q psy145 170 LADYLVNVFEKSYNSAFITTVA 191 (203)
Q Consensus 170 L~DLL~~v~~~~PdvLvlt~~~ 191 (203)
+..+++.+.+.+||.+|+||--
T Consensus 49 l~~~v~~~~~~~~D~VliaGDl 70 (386)
T 3av0_A 49 FKLCIKKILEIKPDVVLHSGDL 70 (386)
T ss_dssp HHHHHHHHHTTCCSEEEECSCS
T ss_pred HHHHHHHHHHcCCCEEEECCCC
Confidence 6788999999999999999964
No 92
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=21.19 E-value=88 Score=25.12 Aligned_cols=42 Identities=19% Similarity=0.187 Sum_probs=33.6
Q ss_pred CceEEEeecCC--CcceecCCcEE---------EEEeecCCCCeEEEeecccC
Q psy145 98 GGRSISLKLPE--TGVAVFPGQIV---------AARGSNPSRNQFIATKIYSD 139 (203)
Q Consensus 98 ~G~rV~Ldls~--~~~SLFPGQIV---------avkG~N~~G~~fvV~eI~~~ 139 (203)
+|++.++.+|. .-=+|=|||-| ...|.-.+|..-.++|++..
T Consensus 27 ~GRkMrv~vsP~vd~~~L~~Gq~V~LNEal~VVea~~~~~~Gev~tv~EvL~d 79 (153)
T 2wfw_A 27 SGRKMRLTCSPNIDTDTLALGQTVRLNEALTIVEAGTYEQVGEISTLREVLDD 79 (153)
T ss_dssp TTEEEEECBCTTCCGGGCCTTCEEEECTTCCEEEECCCCCSEEEEEEEEECTT
T ss_pred CCcEEEEEeCCCCCHHHCCCCCEEEECCceEEEEccCCCCccCEEEEEEEeCC
Confidence 48899999988 88888999854 55677778888888888865
No 93
>3dlo_A Universal stress protein; unknown function, structural genomics, PSI-2, protein struct initiative, midwest center for structural genomics; HET: MSE; 1.97A {Archaeoglobus fulgidus} PDB: 3qtb_A*
Probab=21.15 E-value=76 Score=23.36 Aligned_cols=31 Identities=13% Similarity=-0.101 Sum_probs=25.8
Q ss_pred ceEEEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 160 LRVSYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 160 l~i~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
..+.+..|.+...+++++.+...|.+|+-..
T Consensus 96 ~~~~v~~G~~~~~I~~~a~~~~~DLIV~G~~ 126 (155)
T 3dlo_A 96 EHLLVRGKEPPDDIVDFADEVDAIAIVIGIR 126 (155)
T ss_dssp EEEEESSSCHHHHHHHHHHHTTCSEEEEECC
T ss_pred EEEEecCCCHHHHHHHHHHHcCCCEEEECCC
Confidence 3455677999999999999999999998654
No 94
>1w6n_A Galectin-1; carbohydrate-binding proteins, galactosides; 1.65A {Homo sapiens} SCOP: b.29.1.3 PDB: 1w6m_A 1w6o_A* 1w6p_A* 3t2t_A* 1gzw_A* 2km2_A 3oy8_A* 3oyw_A* 1w6q_A 2zkn_A* 3m2m_A* 1slt_A* 1sla_A* 1slb_A* 1slc_A*
Probab=20.99 E-value=93 Score=23.40 Aligned_cols=26 Identities=23% Similarity=0.604 Sum_probs=21.1
Q ss_pred CcceecCCcEEEEEee-cCCCCeEEEe
Q psy145 109 TGVAVFPGQIVAARGS-NPSRNQFIAT 134 (203)
Q Consensus 109 ~~~SLFPGQIVavkG~-N~~G~~fvV~ 134 (203)
+..+|-||+.|.++|+ .+..+.|.+.
T Consensus 7 ~~~gl~~G~~i~I~G~v~~~~~rF~In 33 (134)
T 1w6n_A 7 SNLNLKPGECLRVRGEVAPDAKSFVLN 33 (134)
T ss_dssp EEEEECTTCEEEEEEEECTTCCBEEEE
T ss_pred ecCCCCcCCEEEEEEEECCCCCeEEEE
Confidence 3468999999999998 4556789987
No 95
>1cz4_A VCP-like ATPase; double-PSI beta-barrel, beta-CLAM, substrate recognition DOM hydrolase; NMR {Thermoplasma acidophilum} SCOP: b.52.2.3 d.31.1.1 PDB: 1cz5_A
Probab=20.90 E-value=37 Score=27.36 Aligned_cols=26 Identities=12% Similarity=0.093 Sum_probs=22.2
Q ss_pred eEEEeecCC-CcceecCCcEEEEEeec
Q psy145 100 RSISLKLPE-TGVAVFPGQIVAARGSN 125 (203)
Q Consensus 100 ~rV~Ldls~-~~~SLFPGQIVavkG~N 125 (203)
..++|+-+. ....||||.+|-++|..
T Consensus 22 ~ivrl~p~~m~~Lgl~~GD~V~I~G~r 48 (185)
T 1cz4_A 22 SRVRLDESSRRLLDAEIGDVVEIEKVR 48 (185)
T ss_dssp SEEEECHHHHHTTCCCTTCEEEEESSS
T ss_pred CEEEECHHHHHHcCCCCCCEEEEEcCC
Confidence 567888877 89999999999999853
No 96
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=20.46 E-value=29 Score=27.64 Aligned_cols=26 Identities=12% Similarity=-0.068 Sum_probs=19.7
Q ss_pred ceecCCcEEEEEeecCCCCeEEEeec
Q psy145 111 VAVFPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 111 ~SLFPGQIVavkG~N~~G~~fvV~eI 136 (203)
...-+|++|++.|.|.+|.+=.++-|
T Consensus 15 ~~~~~g~~i~i~G~~GsGKSTl~~~L 40 (230)
T 2vp4_A 15 AEGTQPFTVLIEGNIGSGKTTYLNHF 40 (230)
T ss_dssp TTTCCCEEEEEECSTTSCHHHHHHTT
T ss_pred CCCCCceEEEEECCCCCCHHHHHHHH
Confidence 44568999999999999976544443
No 97
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=20.43 E-value=39 Score=26.23 Aligned_cols=23 Identities=22% Similarity=0.223 Sum_probs=18.8
Q ss_pred cCCcEEEEEeecCCCCeEEEeec
Q psy145 114 FPGQIVAARGSNPSRNQFIATKI 136 (203)
Q Consensus 114 FPGQIVavkG~N~~G~~fvV~eI 136 (203)
=+|++|++-|.|.+|++-.++.|
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l 42 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPL 42 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHH
Confidence 47999999999999987655544
No 98
>3fg9_A Protein of universal stress protein USPA family; APC60691, nucleotide- binding, lactobacillus plantarum WCFS1, structural genomics PSI-2; 1.47A {Lactobacillus plantarum}
Probab=20.32 E-value=74 Score=22.91 Aligned_cols=32 Identities=9% Similarity=-0.158 Sum_probs=26.8
Q ss_pred cceEEEEc-CcChHHHHHH-HHhcCCCeEEEeee
Q psy145 159 KLRVSYEK-GLPLADYLVN-VFEKSYNSAFITTV 190 (203)
Q Consensus 159 ~l~i~~A~-GPpL~DLL~~-v~~~~PdvLvlt~~ 190 (203)
+....+.. |.+...++++ +.+...|.+|+-..
T Consensus 95 ~~~~~v~~~g~~~~~I~~~~a~~~~~DlIV~G~~ 128 (156)
T 3fg9_A 95 QVEPLVYEGGDVDDVILEQVIPEFKPDLLVTGAD 128 (156)
T ss_dssp SEEEEEEECSCHHHHHHHTHHHHHCCSEEEEETT
T ss_pred ceEEEEEeCCCHHHHHHHHHHHhcCCCEEEECCC
Confidence 35667777 9999999999 99999999998654
No 99
>2dum_A Hypothetical protein PH0823; conserved hypothetical protein, putative universal protein A structural genomics, NPPSFA; 2.75A {Pyrococcus horikoshii}
Probab=20.28 E-value=89 Score=22.82 Aligned_cols=32 Identities=13% Similarity=0.147 Sum_probs=26.7
Q ss_pred cceE--EEEcCcChHHHHHHHHhcCCCeEEEeee
Q psy145 159 KLRV--SYEKGLPLADYLVNVFEKSYNSAFITTV 190 (203)
Q Consensus 159 ~l~i--~~A~GPpL~DLL~~v~~~~PdvLvlt~~ 190 (203)
+... .+..|.+...+++++.++..|.+|+-..
T Consensus 93 ~~~~~~~~~~g~~~~~I~~~a~~~~~DlIV~G~~ 126 (170)
T 2dum_A 93 AKNVRTIIRFGIPWDEIVKVAEEENVSLIILPSR 126 (170)
T ss_dssp CSEEEEEEEEECHHHHHHHHHHHTTCSEEEEESC
T ss_pred ceeeeeEEecCChHHHHHHHHHHcCCCEEEECCC
Confidence 3454 6778999999999999999999988754
No 100
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=20.16 E-value=35 Score=31.73 Aligned_cols=21 Identities=19% Similarity=0.216 Sum_probs=17.9
Q ss_pred cceecCCcEEEEEeecCCCCe
Q psy145 110 GVAVFPGQIVAARGSNPSRNQ 130 (203)
Q Consensus 110 ~~SLFPGQIVavkG~N~~G~~ 130 (203)
++++-+|+||++-|.|.+|++
T Consensus 288 ~~~i~~Gei~~i~G~nGsGKS 308 (538)
T 3ozx_A 288 NGEAKEGEIIGILGPNGIGKT 308 (538)
T ss_dssp CEEEETTCEEEEECCTTSSHH
T ss_pred cceECCCCEEEEECCCCCCHH
Confidence 466789999999999998854
Done!