Your job contains 1 sequence.
>psy145
MSDRMSNQMKSVLDKIRPEWESNPQPSAYRIPWISNLSQFNAIIGLGTVTIGDITLLVPF
LFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETGVAVFPGQIVA
ARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVSYEKGLPLADYLVNVFEK
SYNSAFITTVADFHRAGSSGFHE
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy145
(203 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030131-778 - symbol:pola2 "polymerase (DNA ... 175 2.3e-12 1
UNIPROTKB|B4DNB4 - symbol:POLA2 "cDNA FLJ60312, highly si... 159 4.5e-11 1
UNIPROTKB|Q14181 - symbol:POLA2 "DNA polymerase alpha sub... 159 1.2e-10 1
UNIPROTKB|F1MXS4 - symbol:POLA2 "DNA polymerase alpha sub... 159 1.2e-10 1
UNIPROTKB|F1MLC0 - symbol:POLA2 "DNA polymerase alpha sub... 159 1.2e-10 1
UNIPROTKB|Q58D13 - symbol:POLA2 "DNA polymerase alpha sub... 159 1.2e-10 1
UNIPROTKB|F1RQV4 - symbol:POLA2 "Uncharacterized protein"... 158 1.5e-10 1
UNIPROTKB|F6XEE7 - symbol:POLA2 "Uncharacterized protein"... 156 2.5e-10 1
UNIPROTKB|E2R2N0 - symbol:POLA2 "Uncharacterized protein"... 156 2.5e-10 1
MGI|MGI:99690 - symbol:Pola2 "polymerase (DNA directed), ... 152 6.8e-10 1
UNIPROTKB|G3V8U6 - symbol:Pola2 "Polymerase (DNA directed... 149 1.4e-09 1
ASPGD|ASPL0000002116 - symbol:AN10855 species:162425 "Eme... 149 1.7e-09 1
RGD|621817 - symbol:Pola2 "polymerase (DNA directed), alp... 148 3.7e-09 1
POMBASE|SPCC553.09c - symbol:spb70 "DNA polymerase alpha ... 145 2.2e-08 1
TAIR|locus:2008580 - symbol:POLA2 "DNA polymerase alpha 2... 126 1.4e-05 1
>ZFIN|ZDB-GENE-030131-778 [details] [associations]
symbol:pola2 "polymerase (DNA directed), alpha 2"
species:7955 "Danio rerio" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 ZFIN:ZDB-GENE-030131-778 GO:GO:0003677 GO:GO:0006260
GO:GO:0003887 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 HOVERGEN:HBG055628 EMBL:BC065460 IPI:IPI00505805
UniGene:Dr.77094 STRING:Q6P0S9 PRIDE:Q6P0S9 InParanoid:Q6P0S9
ArrayExpress:Q6P0S9 Bgee:Q6P0S9 Uniprot:Q6P0S9
Length = 600
Score = 175 (66.7 bits), Expect = 2.3e-12, P = 2.3e-12
Identities = 40/93 (43%), Positives = 56/93 (60%)
Query: 68 ITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VAVFPGQIVAARGSNP 126
IT +G++ CD S+GKLNA SVLLE + GGR + + L E ++FPGQ+V G NP
Sbjct: 251 ITVLGQVCCD-SNGKLNAQSVLLEAGQ-EQGGRQVPVDLSELKEFSLFPGQVVVMEGMNP 308
Query: 127 SRNQFIATKIYSDASLPL---SETRPALDQNTE 156
S + +ATK+Y LP SE + +D+ E
Sbjct: 309 SGEKLVATKLYEGIPLPFYCPSEVKQEMDEVCE 341
>UNIPROTKB|B4DNB4 [details] [associations]
symbol:POLA2 "cDNA FLJ60312, highly similar to DNA
polymerase subunit alpha B" species:9606 "Homo sapiens" [GO:0003677
"DNA binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634 GO:GO:0005737
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 InterPro:IPR016722
InterPro:IPR013627 Pfam:PF08418 PIRSF:PIRSF018300 UniGene:Hs.201897
HGNC:HGNC:30073 ChiTaRS:POLA2 EMBL:AP000944 EMBL:AK297842
IPI:IPI00908664 SMR:B4DNB4 STRING:B4DNB4 Ensembl:ENST00000541089
UCSC:uc010rod.1 Uniprot:B4DNB4
Length = 361
Score = 159 (61.0 bits), Expect = 4.5e-11, P = 4.5e-11
Identities = 37/91 (40%), Positives = 50/91 (54%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
I P L +T +G+I CD S+GKLN SV+LEGD S G I + L E +
Sbjct: 29 IEAFTPLLAPAQEPVTLLGQIGCD-SNGKLNNKSVILEGDREHSSGAQIPVDLSELKEYS 87
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLP 143
+FPGQ+V G N + + +ATK+Y LP
Sbjct: 88 LFPGQVVIMEGINTTGRKLVATKLYEGVPLP 118
>UNIPROTKB|Q14181 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000060
"protein import into nucleus, translocation" evidence=IEA]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA;NAS] [GO:0003674 "molecular_function" evidence=ND]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000082 "G1/S transition of mitotic
cell cycle" evidence=TAS] [GO:0000084 "S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006270 "DNA replication
initiation" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005737 Reactome:REACT_115566
GO:GO:0005654 Reactome:REACT_21300 GO:GO:0003677 GO:GO:0000082
GO:GO:0006270 GO:GO:0000060 GO:GO:0000216 GO:GO:0000084
GO:GO:0000722 Reactome:REACT_383 GO:GO:0006271 GO:GO:0003887
DrugBank:DB00851 GO:GO:0032201 CTD:23649 eggNOG:COG5214
HOGENOM:HOG000007382 KO:K02321 InterPro:IPR016722
InterPro:IPR013627 Pfam:PF08418 PIRSF:PIRSF018300 GO:GO:0005658
EMBL:L24559 EMBL:CR456737 EMBL:BC002990 EMBL:BC001347
IPI:IPI00290272 PIR:S39621 RefSeq:NP_002680.2 UniGene:Hs.201897
PDB:2KEB PDB:4E2I PDBsum:2KEB PDBsum:4E2I ProteinModelPortal:Q14181
SMR:Q14181 IntAct:Q14181 MINT:MINT-1382407 STRING:Q14181
PhosphoSite:Q14181 DMDM:90110415 PaxDb:Q14181 PeptideAtlas:Q14181
PRIDE:Q14181 DNASU:23649 Ensembl:ENST00000265465 GeneID:23649
KEGG:hsa:23649 UCSC:uc001odj.3 GeneCards:GC11P065029
HGNC:HGNC:30073 HPA:HPA037570 neXtProt:NX_Q14181 PharmGKB:PA411
HOVERGEN:HBG055628 InParanoid:Q14181 OMA:QVGGTFG OrthoDB:EOG4933HH
PhylomeDB:Q14181 ChiTaRS:POLA2 EvolutionaryTrace:Q14181
GenomeRNAi:23649 NextBio:46481 ArrayExpress:Q14181 Bgee:Q14181
CleanEx:HS_POLA2 Genevestigator:Q14181 GermOnline:ENSG00000014138
Uniprot:Q14181
Length = 598
Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 37/91 (40%), Positives = 50/91 (54%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
I P L +T +G+I CD S+GKLN SV+LEGD S G I + L E +
Sbjct: 237 IEAFTPLLAPAQEPVTLLGQIGCD-SNGKLNNKSVILEGDREHSSGAQIPVDLSELKEYS 295
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLP 143
+FPGQ+V G N + + +ATK+Y LP
Sbjct: 296 LFPGQVVIMEGINTTGRKLVATKLYEGVPLP 326
>UNIPROTKB|F1MXS4 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9913
"Bos taurus" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
UniGene:Bt.37506 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 EMBL:DAAA02063561
IPI:IPI00841939 Ensembl:ENSBTAT00000045520 ArrayExpress:F1MXS4
Uniprot:F1MXS4
Length = 600
Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 39/111 (35%), Positives = 59/111 (53%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
I P L +T +G+I CD S+GKLN SV+LEGD S G I + L E +
Sbjct: 239 IEAFAPILVPAQEPVTLLGQIGCD-SNGKLNHKSVILEGDLEHSSGAQIPVDLSELKEYS 297
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVS 163
+FPGQ+V G N + + +AT++Y LP + D ++E + + V+
Sbjct: 298 LFPGQVVVMEGINTTGRKLVATRLYEGVPLPFHQPDEE-DGDSEQFMVLVA 347
>UNIPROTKB|F1MLC0 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9913
"Bos taurus" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0000060
GO:GO:0003887 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 GO:GO:0005658
OMA:QVGGTFG EMBL:DAAA02063561 IPI:IPI01017580
Ensembl:ENSBTAT00000015221 ArrayExpress:F1MLC0 Uniprot:F1MLC0
Length = 604
Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 39/111 (35%), Positives = 59/111 (53%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
I P L +T +G+I CD S+GKLN SV+LEGD S G I + L E +
Sbjct: 239 IEAFAPILVPAQEPVTLLGQIGCD-SNGKLNHKSVILEGDLEHSSGAQIPVDLSELKEYS 297
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVS 163
+FPGQ+V G N + + +AT++Y LP + D ++E + + V+
Sbjct: 298 LFPGQVVVMEGINTTGRKLVATRLYEGVPLPFHQPDEE-DGDSEQFMVLVA 347
>UNIPROTKB|Q58D13 [details] [associations]
symbol:POLA2 "DNA polymerase alpha subunit B" species:9913
"Bos taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007185 Pfam:PF04042 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 EMBL:BT021784 IPI:IPI00686582
RefSeq:NP_001019713.2 UniGene:Bt.37506 STRING:Q58D13 GeneID:514793
KEGG:bta:514793 CTD:23649 eggNOG:COG5214 HOGENOM:HOG000007382
InParanoid:Q58D13 KO:K02321 BindingDB:Q58D13 ChEMBL:CHEMBL5259
NextBio:20871515 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 Uniprot:Q58D13
Length = 604
Score = 159 (61.0 bits), Expect = 1.2e-10, P = 1.2e-10
Identities = 39/111 (35%), Positives = 59/111 (53%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
I P L +T +G+I CD S+GKLN SV+LEGD S G I + L E +
Sbjct: 239 IEAFAPILVPAQEPVTLLGQIGCD-SNGKLNHKSVILEGDLEHSSGAQIPVDLSELKEYS 297
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPLSETRPALDQNTEMYKLRVS 163
+FPGQ+V G N + + +AT++Y LP + D ++E + + V+
Sbjct: 298 LFPGQVVVMEGINTTGRKLVATRLYEGVPLPFHQPDEE-DGDSEQFMVLVA 347
>UNIPROTKB|F1RQV4 [details] [associations]
symbol:POLA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0000060
GO:GO:0003887 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 GO:GO:0005658
OMA:QVGGTFG EMBL:CU856029 Ensembl:ENSSSCT00000014207 Uniprot:F1RQV4
Length = 598
Score = 158 (60.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 36/94 (38%), Positives = 51/94 (54%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
I P L +T +G+I CD S+GKLN SV+LEGD S G I + L E +
Sbjct: 238 IEAFTPVLVPAQEPVTLLGQIGCD-SNGKLNHKSVILEGDREHSSGAQIPVDLSELKEYS 296
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLPLSE 146
+FPGQ+V G N + + +AT++Y LP +
Sbjct: 297 LFPGQVVVMEGINTTGRKLVATRLYEGVPLPFHQ 330
>UNIPROTKB|F6XEE7 [details] [associations]
symbol:POLA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 CTD:23649
KO:K02321 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 OMA:QVGGTFG
EMBL:AAEX03011641 Ensembl:ENSCAFT00000021706 RefSeq:XP_533234.2
GeneID:476025 KEGG:cfa:476025 Uniprot:F6XEE7
Length = 595
Score = 156 (60.0 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 36/91 (39%), Positives = 50/91 (54%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
I P L + +G+I CDT+ GKLN+ SV+LEGD S G I + L E +
Sbjct: 233 IEAFTPVLVPAQEPVILLGQIGCDTN-GKLNSKSVILEGDREHSSGAQIPVDLSELKEYS 291
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLP 143
+FPGQ+V G N + + +ATK+Y LP
Sbjct: 292 LFPGQVVIMEGINTTGRKLVATKLYEGLPLP 322
>UNIPROTKB|E2R2N0 [details] [associations]
symbol:POLA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046982 "protein heterodimerization activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0000060
GO:GO:0003887 InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GO:GO:0005658 Ensembl:ENSCAFT00000021706
Uniprot:E2R2N0
Length = 597
Score = 156 (60.0 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 36/91 (39%), Positives = 50/91 (54%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
I P L + +G+I CDT+ GKLN+ SV+LEGD S G I + L E +
Sbjct: 233 IEAFTPVLVPAQEPVILLGQIGCDTN-GKLNSKSVILEGDREHSSGAQIPVDLSELKEYS 291
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLP 143
+FPGQ+V G N + + +ATK+Y LP
Sbjct: 292 LFPGQVVIMEGINTTGRKLVATKLYEGLPLP 322
>MGI|MGI:99690 [details] [associations]
symbol:Pola2 "polymerase (DNA directed), alpha 2"
species:10090 "Mus musculus" [GO:0000060 "protein import into
nucleus, translocation" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISO] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006260 "DNA
replication" evidence=ISO;IDA] [GO:0046982 "protein
heterodimerization activity" evidence=IPI] InterPro:IPR007185
Pfam:PF04042 MGI:MGI:99690 GO:GO:0005737 GO:GO:0003677
GO:GO:0006260 GO:GO:0000060 EMBL:CH466612 GO:GO:0003887 CTD:23649
eggNOG:COG5214 HOGENOM:HOG000007382 KO:K02321 InterPro:IPR016722
InterPro:IPR013627 Pfam:PF08418 PIRSF:PIRSF018300
GeneTree:ENSGT00390000016784 GO:GO:0005658 HOVERGEN:HBG055628
OMA:QVGGTFG OrthoDB:EOG4933HH EMBL:D13546 EMBL:AK150099
EMBL:BC021424 EMBL:BC064795 IPI:IPI00331177 PIR:B46642
RefSeq:NP_032919.2 UniGene:Mm.209931 ProteinModelPortal:P33611
SMR:P33611 IntAct:P33611 STRING:P33611 PhosphoSite:P33611
PaxDb:P33611 PRIDE:P33611 Ensembl:ENSMUST00000025752 GeneID:18969
KEGG:mmu:18969 InParanoid:Q8VDR3 BindingDB:P33611 ChEMBL:CHEMBL3005
NextBio:295312 Bgee:P33611 CleanEx:MM_POLA2 Genevestigator:P33611
GermOnline:ENSMUSG00000024833 Uniprot:P33611
Length = 600
Score = 152 (58.6 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 36/91 (39%), Positives = 50/91 (54%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPETG-VA 112
I P L + +G+I CD S+GKLN+ SV+LEGD+ S G I + L E +
Sbjct: 237 IEAFTPLLVPAQEPVILLGQIGCD-SNGKLNSKSVILEGDQEHSYGAQIPVDLSELKEYS 295
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLP 143
+FPGQ+V G N + + ATK+Y LP
Sbjct: 296 LFPGQVVIMEGFNTTGRRLTATKLYEGVPLP 326
>UNIPROTKB|G3V8U6 [details] [associations]
symbol:Pola2 "Polymerase (DNA directed), alpha 2, isoform
CRA_a" species:10116 "Rattus norvegicus" [GO:0000060 "protein
import into nucleus, translocation" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 RGD:621817 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GeneTree:ENSGT00390000016784 OMA:QVGGTFG
UniGene:Rn.205002 EMBL:CH473953 Ensembl:ENSRNOT00000028406
Uniprot:G3V8U6
Length = 600
Score = 149 (57.5 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 34/91 (37%), Positives = 49/91 (53%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPET-GVA 112
I P L + +G+I CD S+G+LN+ SV+LEGD S G I + + E +
Sbjct: 237 IEAFTPLLVPAQEPVILLGQIGCD-SNGRLNSKSVILEGDREHSSGAQIPVDMSELKDYS 295
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLP 143
+FPGQ+V G N + + ATK+Y LP
Sbjct: 296 LFPGQVVIMEGFNTTGRRLTATKLYEGVPLP 326
>ASPGD|ASPL0000002116 [details] [associations]
symbol:AN10855 species:162425 "Emericella nidulans"
[GO:0005635 "nuclear envelope" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016233
"telomere capping" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
GO:GO:0003677 GO:GO:0006260 EMBL:BN001301 GO:GO:0003887
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 OMA:FFPGQIV EnsemblFungi:CADANIAT00007654
Uniprot:C8V2N1
Length = 682
Score = 149 (57.5 bits), Expect = 1.7e-09, P = 1.7e-09
Identities = 36/94 (38%), Positives = 50/94 (53%)
Query: 65 TTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPET-GVAVFPGQIVAARG 123
T EI A+GRI D+ +GKLN AS++LE + GR + L + V FPGQIVA G
Sbjct: 287 TNEIVAVGRIASDSPEGKLNPASLVLETSRRSGAGRRVPLNVDSIPSVNFFPGQIVALLG 346
Query: 124 SNPSRNQFIATKIYSDASLPLSETR-PALDQNTE 156
N S N F ++ LP + + P ++ E
Sbjct: 347 INASGNYFSVKEVLPPPLLPPAVSSVPTIESTNE 380
>RGD|621817 [details] [associations]
symbol:Pola2 "polymerase (DNA directed), alpha 2, accessory
subunit" species:10116 "Rattus norvegicus" [GO:0000060 "protein
import into nucleus, translocation" evidence=ISO] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IMP] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IC;ISO;TAS] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006260 "DNA replication" evidence=ISO;IMP;TAS] [GO:0046982
"protein heterodimerization activity" evidence=ISO] [GO:0005730
"nucleolus" evidence=ISO] InterPro:IPR007185 Pfam:PF04042
RGD:621817 GO:GO:0005737 GO:GO:0003677 GO:GO:0006260 GO:GO:0000060
GO:GO:0003887 eggNOG:COG5214 HOGENOM:HOG000007382
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GO:GO:0005658 HOVERGEN:HBG055628
OrthoDB:EOG4933HH EMBL:AJ245648 EMBL:AJ011606 IPI:IPI00214475
UniGene:Rn.205002 STRING:O89043 PRIDE:O89043 UCSC:RGD:621817
InParanoid:O89043 Genevestigator:O89043
GermOnline:ENSRNOG00000020906 Uniprot:O89043
Length = 600
Score = 148 (57.2 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 34/91 (37%), Positives = 49/91 (53%)
Query: 54 ITLLVPFLFGDTTEITAIGRIVCDTSDGKLNAASVLLEGDEVTSGGRSISLKLPET-GVA 112
I P L + +G+I CD S+G+LN+ SV+LEGD S G I + + E +
Sbjct: 237 IEAFTPLLVPAQEPVILLGQIGCD-SNGRLNSKSVILEGDREHSSGAQIPVDVSELKDYS 295
Query: 113 VFPGQIVAARGSNPSRNQFIATKIYSDASLP 143
+FPGQ+V G N + + ATK+Y LP
Sbjct: 296 LFPGQVVIMEGFNTTGRRLTATKLYEGVPLP 326
>POMBASE|SPCC553.09c [details] [associations]
symbol:spb70 "DNA polymerase alpha B-subunit"
species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=TAS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IC] [GO:0006270 "DNA
replication initiation" evidence=NAS] InterPro:IPR007185
Pfam:PF04042 PomBase:SPCC553.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0000790 GO:GO:0006270
GO:GO:0003887 GO:GO:0006269 eggNOG:COG5214 KO:K02321
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 GO:GO:0005658 PIR:T41395 RefSeq:NP_587765.1
IntAct:O74946 STRING:O74946 EnsemblFungi:SPCC553.09c.1
GeneID:2539135 KEGG:spo:SPCC553.09c OMA:FFPGQIV OrthoDB:EOG4HDX2Z
NextBio:20800307 Uniprot:O74946
Length = 574
Score = 145 (56.1 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 68 ITAIGRIVCDTSD--GKLNAASVLLEGDEVTSGGRSISLKLPET-GVAVFPGQIVAARGS 124
+ +GRIV ++++ G+LN S+LLE G + LK+ + ++FPGQIV+ +GS
Sbjct: 205 VVVVGRIVVESTNLGGRLNQNSILLESSRRLGAGVRVRLKVDDLPSYSIFPGQIVSVKGS 264
Query: 125 NPSRNQFIATKIYSDASLP 143
NPS N FIA +I LP
Sbjct: 265 NPSGNMFIAKEILPIPPLP 283
>TAIR|locus:2008580 [details] [associations]
symbol:POLA2 "DNA polymerase alpha 2" species:3702
"Arabidopsis thaliana" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260
"DNA replication" evidence=IEA;RCA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005829 "cytosol" evidence=RCA] [GO:0000724
"double-strand break repair via homologous recombination"
evidence=RCA] [GO:0006261 "DNA-dependent DNA replication"
evidence=RCA] [GO:0006270 "DNA replication initiation"
evidence=RCA] [GO:0006275 "regulation of DNA replication"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0008283 "cell proliferation" evidence=RCA] [GO:0009909
"regulation of flower development" evidence=RCA] [GO:0010389
"regulation of G2/M transition of mitotic cell cycle" evidence=RCA]
[GO:0016458 "gene silencing" evidence=RCA] [GO:0034968 "histone
lysine methylation" evidence=RCA] [GO:0051567 "histone H3-K9
methylation" evidence=RCA] [GO:0051726 "regulation of cell cycle"
evidence=RCA] InterPro:IPR007185 Pfam:PF04042 EMBL:CP002684
GO:GO:0005739 GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 KO:K02321
InterPro:IPR016722 InterPro:IPR013627 Pfam:PF08418
PIRSF:PIRSF018300 IPI:IPI00519085 RefSeq:NP_176930.2
UniGene:At.35625 ProteinModelPortal:F4HTP2 SMR:F4HTP2 PRIDE:F4HTP2
EnsemblPlants:AT1G67630.1 GeneID:843086 KEGG:ath:AT1G67630
OMA:GCRFMYD Uniprot:F4HTP2
Length = 620
Score = 126 (49.4 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 34/82 (41%), Positives = 48/82 (58%)
Query: 68 ITAIGRIVCDTSDGKLNAASVLLEGD-EVTSGGR-SISLKLPETGVAVFPGQIVAARGSN 125
I A+G I CD +G LN S+LL+ E TSG R + LK + ++FPGQ+V G N
Sbjct: 252 IFAVGMICCD-GEGHLNDKSILLQSSAERTSGQRVPVDLKRLDQ-FSIFPGQVVGIEGQN 309
Query: 126 PSRNQFIATKIYSDASLPLSET 147
PS + A+K+ S+PL+ T
Sbjct: 310 PSGHYLTASKLLD--SVPLTLT 329
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.133 0.380 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 203 203 0.00092 111 3 11 22 0.38 33
31 0.46 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 15
No. of states in DFA: 589 (63 KB)
Total size of DFA: 155 KB (2093 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.34u 0.09s 17.43t Elapsed: 00:00:05
Total cpu time: 17.34u 0.09s 17.43t Elapsed: 00:00:05
Start: Thu Aug 15 13:02:11 2013 End: Thu Aug 15 13:02:16 2013