RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy145
         (203 letters)



>d2cclb1 a.139.1.1 (B:1-59) Endo-1,4-beta-xylanase Y {Clostridium
          thermocellum [TaxId: 1515]}
          Length = 59

 Score = 27.3 bits (61), Expect = 0.25
 Identities = 14/45 (31%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 47 GTVTIGDITLLVPFLFGDTTEITAIGRIVCD-TSDGKLNAASVLL 90
          GT+   D+T+L   +      +T   +   D   +G +NAA VLL
Sbjct: 7  GTINSTDLTMLKRSVLR-AITLTDDAKARADVDKNGSINAADVLL 50


>d1cxla3 b.71.1.1 (A:407-496) Cyclodextrin glycosyltransferase
           {Bacillus circulans, different strains [TaxId: 1397]}
          Length = 90

 Score = 24.8 bits (54), Expect = 3.9
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 83  LNAASVLLEGDE--VTSGGRSISLKLPETGVAVF 114
            +    LL G+   V SGG + +  L   G AV+
Sbjct: 51  NDVLGGLLNGNTLSVGSGGAASNFTLAAGGTAVW 84


>d1dava_ a.139.1.1 (A:) Cellulosome endoglucanase SS {Clostridium
          thermocellum [TaxId: 1515]}
          Length = 71

 Score = 23.1 bits (50), Expect = 9.0
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 4/45 (8%)

Query: 47 GTVTIGDITLLVPFLFGDTTEITAIGRIVCD-TSDGKLNAASVLL 90
          G V   D   L  ++         I     D   DG++N+  + +
Sbjct: 13 GKVNSTDAVALKRYVLRSGIS---INTDNADLNEDGRVNSTDLGI 54


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.133    0.380 

Gapped
Lambda     K      H
   0.267   0.0711    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 715,609
Number of extensions: 30067
Number of successful extensions: 71
Number of sequences better than 10.0: 1
Number of HSP's gapped: 71
Number of HSP's successfully gapped: 3
Length of query: 203
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 122
Effective length of database: 1,295,466
Effective search space: 158046852
Effective search space used: 158046852
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.5 bits)