BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1450
(187 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3Q6K|A Chain A, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6K|B Chain B, Salivary Protein From Lutzomyia Longipalpis
pdb|3Q6T|A Chain A, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
pdb|3Q6T|B Chain B, Salivary Protein From Lutzomyia Longipalpis, Ligand Free
Length = 381
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 56 KRIFVTTPKLRTGIPVTLSTLSSKRS----KDGSPLLEPFPNWDAHSEGNCDGLTSVFRV 111
+++F+ P+ +P TL+ + +K S SPLL F H G LTS+++
Sbjct: 38 EKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKF---SGHKTGK--ELTSIYQP 92
Query: 112 EVDECGRLWVLDTGKLN--AFGETPKVVCPPQIVVYDLNQGDK-VILRHKFPDSQIAANS 168
+D+C RLWV+D G + + G P IV YDL Q + ++R+ FP + +
Sbjct: 93 VIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPT 152
Query: 169 LPLTIVIDTRNPQ 181
+D NP+
Sbjct: 153 YFGGFAVDVANPK 165
>pdb|3Q6P|A Chain A, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
pdb|3Q6P|B Chain B, Salivary Protein From Lutzomyia Longipalpis.
Selenomethionine Derivative
Length = 381
Score = 54.7 bits (130), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 56 KRIFVTTPKLRTGIPVTLSTLSSKRS----KDGSPLLEPFPNWDAHSEGNCDGLTSVFRV 111
+++F+ P+ +P TL+ + +K S SPLL F H G LTS+++
Sbjct: 38 EKLFLAVPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKF---SGHKTGK--ELTSIYQP 92
Query: 112 EVDECGRLWVLDTG--KLNAFGETPKVVCPPQIVVYDLNQGDK-VILRHKFPDSQIAANS 168
+D+C RLWV+D G + + G P IV YDL Q + ++R+ FP + +
Sbjct: 93 VIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPT 152
Query: 169 LPLTIVIDTRNPQ 181
+D NP+
Sbjct: 153 YFGGFAVDVANPK 165
>pdb|3U7D|A Chain A, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
pdb|3U7D|C Chain C, Crystal Structure Of The Krit1/ccm1 Ferm Domain In Complex
With The Heart Of Glass (heg1) Cytoplasmic Tail
Length = 322
Score = 29.3 bits (64), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 47 YGNASGNKEKRIFVTTPKLRTGIPVTLSTLSSKRSKDGSPLLEPFPNWDAHSEGNCDGLT 106
YGN K K+ F+ L++ +PVT L SK + +L + N SEG +
Sbjct: 149 YGNYESKKHKQGFLNEENLKSIVPVT--KLKSKAPHWTNRILHEYKNLST-SEGVSKEMH 205
Query: 107 SVFRVEVDEC 116
+ R+ + C
Sbjct: 206 HLQRMFLQNC 215
>pdb|4DXA|B Chain B, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 322
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 47 YGNASGNKEKRIFVTTPKLRTGIPVTLSTLSSKRSKDGSPLLEPFPNWDAHSEGNCDGLT 106
YGN K K+ F+ L++ +PVT L SK + +L + N SEG +
Sbjct: 149 YGNYESKKHKQGFLNEENLKSIVPVT--KLKSKAPHWTNRILHEYKNLST-SEGVSKEMH 205
Query: 107 SVFRVEVDEC 116
+ R+ + C
Sbjct: 206 HLQRMFLQNC 215
>pdb|3B1Y|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35a Mutant
Bound To Gdp
Length = 272
Score = 27.3 bits (59), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 53 NKEKRIFVTTPKLRTGIPVTLS 74
N E+ +++TT + TGIPVT++
Sbjct: 92 NLERNLYLTTQLIETGIPVTIA 113
>pdb|3B1X|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
pdb|3B1X|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E66a Mutant
Bound To Gmppnp
Length = 272
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 53 NKEKRIFVTTPKLRTGIPVTLS 74
N E+ +++TT + TGIPVT++
Sbjct: 92 NLERNLYLTTQLIETGIPVTIA 113
>pdb|3B1V|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Mgmppnp
pdb|3B1W|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|C Chain C, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
pdb|3B1W|D Chain D, Crystal Structure Of An S. Thermophilus Nfeob E67a Mutant
Bound To Gdp
Length = 272
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 53 NKEKRIFVTTPKLRTGIPVTLS 74
N E+ +++TT + TGIPVT++
Sbjct: 92 NLERNLYLTTQLIETGIPVTIA 113
>pdb|3B1Z|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob T35s Mutant
Without Nucleotide
Length = 272
Score = 27.3 bits (59), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 53 NKEKRIFVTTPKLRTGIPVTLS 74
N E+ +++TT + TGIPVT++
Sbjct: 92 NLERNLYLTTQLIETGIPVTIA 113
>pdb|3TAH|A Chain A, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
pdb|3TAH|B Chain B, Crystal Structure Of An S. Thermophilus Nfeob N11a Mutant
Bound To Mgdp
Length = 272
Score = 27.3 bits (59), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 53 NKEKRIFVTTPKLRTGIPVTLS 74
N E+ +++TT + TGIPVT++
Sbjct: 92 NLERNLYLTTQLIETGIPVTIA 113
>pdb|3LX5|A Chain A, Crystal Structure Of Mgmppnp-Bound Nfeob From S.
Thermophilus
pdb|3LX8|A Chain A, Crystal Structure Of Gdp-Bound Nfeob From S. Thermophilus
pdb|3SS8|A Chain A, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
pdb|3SS8|B Chain B, Crystal Structure Of Nfeob From S. Thermophilus Bound To
Gdp.Alf4- And K+
Length = 272
Score = 27.3 bits (59), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 17/22 (77%)
Query: 53 NKEKRIFVTTPKLRTGIPVTLS 74
N E+ +++TT + TGIPVT++
Sbjct: 92 NLERNLYLTTQLIETGIPVTIA 113
>pdb|1P9E|A Chain A, Crystal Structure Analysis Of Methyl Parathion Hydrolase
From Pseudomonas Sp Wbc-3
pdb|1P9E|B Chain B, Crystal Structure Analysis Of Methyl Parathion Hydrolase
From Pseudomonas Sp Wbc-3
Length = 331
Score = 26.9 bits (58), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Query: 106 TSVFRVEVDECGRLWVLDTGKLNAFGET-PKVVCPPQIVVYDLNQGDKVILRHKFPD 161
TSV V+ +L ++DTG FG T ++ + Y Q D++ + H PD
Sbjct: 95 TSVTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHMHPD 151
>pdb|1MN8|A Chain A, Structure Of Moloney Murine Leukaemia Virus Matrix
Protein
pdb|1MN8|B Chain B, Structure Of Moloney Murine Leukaemia Virus Matrix
Protein
pdb|1MN8|C Chain C, Structure Of Moloney Murine Leukaemia Virus Matrix
Protein
pdb|1MN8|D Chain D, Structure Of Moloney Murine Leukaemia Virus Matrix
Protein
Length = 100
Score = 26.6 bits (57), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 9/44 (20%)
Query: 6 EWSSVDYVWPSSQDRDNAIRDGKYNASSVAILDVDVFDPANYGN 49
EW + + WP RDG +N + + + VF P +G+
Sbjct: 43 EWPTFNVGWP---------RDGTFNRDLITQVKIKVFSPGPHGH 77
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,203,847
Number of Sequences: 62578
Number of extensions: 261620
Number of successful extensions: 476
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 468
Number of HSP's gapped (non-prelim): 13
length of query: 187
length of database: 14,973,337
effective HSP length: 93
effective length of query: 94
effective length of database: 9,153,583
effective search space: 860436802
effective search space used: 860436802
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)