Query psy1450
Match_columns 187
No_of_seqs 135 out of 542
Neff 6.2
Searched_HMMs 46136
Date Fri Aug 16 21:23:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1450.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1450hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03022 MRJP: Major royal jel 99.9 2.9E-24 6.3E-29 185.8 8.4 80 106-187 1-80 (287)
2 PF01436 NHL: NHL repeat; Int 93.7 0.089 1.9E-06 29.9 2.9 23 105-127 1-23 (28)
3 COG4257 Vgb Streptogramin lyas 92.0 0.32 6.8E-06 43.0 5.2 55 106-178 104-158 (353)
4 PF07494 Reg_prop: Two compone 90.6 0.3 6.5E-06 26.8 2.4 16 106-121 5-20 (24)
5 PF08450 SGL: SMP-30/Gluconola 90.0 3.6 7.8E-05 33.8 9.6 103 32-178 84-194 (246)
6 PF08450 SGL: SMP-30/Gluconola 84.2 2.9 6.2E-05 34.4 5.8 40 107-161 185-224 (246)
7 TIGR02276 beta_rpt_yvtn 40-res 81.3 7.7 0.00017 22.7 5.5 32 116-161 3-34 (42)
8 PLN02919 haloacid dehalogenase 80.3 17 0.00036 37.3 10.6 45 102-160 855-901 (1057)
9 TIGR03032 conserved hypothetic 79.6 5.3 0.00012 35.8 6.0 56 103-174 200-255 (335)
10 KOG4499|consensus 74.3 5 0.00011 34.9 4.2 43 110-166 216-258 (310)
11 PF06433 Me-amine-dh_H: Methyl 68.0 5.5 0.00012 35.9 3.2 43 115-163 248-291 (342)
12 PF13449 Phytase-like: Esteras 67.0 18 0.00038 31.7 6.2 64 107-179 86-158 (326)
13 COG3386 Gluconolactonase [Carb 63.3 29 0.00064 30.5 6.9 55 109-177 216-274 (307)
14 PF03022 MRJP: Major royal jel 63.1 22 0.00047 30.8 6.0 71 35-130 187-260 (287)
15 PF07995 GSDH: Glucose / Sorbo 62.5 15 0.00033 32.2 5.0 81 33-127 113-203 (331)
16 TIGR02604 Piru_Ver_Nterm putat 59.9 20 0.00043 31.8 5.3 25 102-126 180-204 (367)
17 PF01011 PQQ: PQQ enzyme repea 58.8 24 0.00052 20.8 4.0 24 139-163 9-32 (38)
18 PF13645 YkuD_2: L,D-transpept 57.2 26 0.00057 28.6 5.1 37 113-159 31-67 (176)
19 TIGR02604 Piru_Ver_Nterm putat 56.8 30 0.00065 30.7 5.9 43 105-149 13-56 (367)
20 TIGR02658 TTQ_MADH_Hv methylam 52.3 63 0.0014 29.1 7.2 47 111-162 253-300 (352)
21 smart00284 OLF Olfactomedin-li 47.0 1.1E+02 0.0025 26.4 7.7 85 37-161 131-221 (255)
22 KOG0649|consensus 45.3 28 0.00061 30.5 3.6 47 138-186 225-271 (325)
23 COG4257 Vgb Streptogramin lyas 43.5 35 0.00077 30.4 4.0 52 108-178 235-286 (353)
24 PF03088 Str_synth: Strictosid 40.8 35 0.00075 24.7 3.1 55 110-165 2-64 (89)
25 PF02191 OLF: Olfactomedin-lik 39.6 2.2E+02 0.0048 24.3 8.3 91 36-161 125-216 (250)
26 COG3386 Gluconolactonase [Carb 35.4 1E+02 0.0022 27.2 5.7 43 103-147 108-150 (307)
27 PF02191 OLF: Olfactomedin-lik 32.7 98 0.0021 26.4 5.0 40 138-178 87-133 (250)
28 smart00284 OLF Olfactomedin-li 31.6 99 0.0021 26.7 4.9 40 138-178 92-138 (255)
29 PF03284 PHZA_PHZB: Phenazine 31.5 44 0.00096 26.8 2.5 62 87-159 74-138 (162)
30 PF05096 Glu_cyclase_2: Glutam 31.5 84 0.0018 27.3 4.5 47 106-164 45-91 (264)
31 PRK10380 hypothetical protein; 30.9 1.4E+02 0.0029 20.3 4.4 38 134-171 5-42 (63)
32 PF05096 Glu_cyclase_2: Glutam 30.7 45 0.00098 29.0 2.7 40 139-180 194-243 (264)
33 PF10282 Lactonase: Lactonase, 30.7 2.3E+02 0.005 24.6 7.2 54 106-178 144-202 (345)
34 TIGR03606 non_repeat_PQQ dehyd 29.3 41 0.00088 31.5 2.3 26 102-127 226-251 (454)
35 PF06739 SBBP: Beta-propeller 28.0 77 0.0017 19.0 2.7 18 34-62 13-30 (38)
36 PF06433 Me-amine-dh_H: Methyl 27.8 1.9E+02 0.004 26.2 6.1 93 28-158 234-329 (342)
37 PLN02919 haloacid dehalogenase 27.2 1.3E+02 0.0027 31.1 5.5 40 104-157 802-841 (1057)
38 smart00564 PQQ beta-propeller 26.8 74 0.0016 17.4 2.4 17 140-157 16-32 (33)
39 PF06977 SdiA-regulated: SdiA- 26.3 1.9E+02 0.0042 24.6 5.8 110 32-178 116-232 (248)
40 TIGR02658 TTQ_MADH_Hv methylam 25.5 5E+02 0.011 23.4 11.2 78 55-160 259-342 (352)
41 cd01210 EPS8 Epidermal growth 24.9 30 0.00064 26.9 0.5 47 112-169 32-78 (127)
42 PF14398 ATPgrasp_YheCD: YheC/ 24.8 67 0.0014 27.3 2.7 18 108-125 213-230 (262)
43 PF06977 SdiA-regulated: SdiA- 23.4 3.1E+02 0.0067 23.4 6.5 40 107-161 23-63 (248)
44 PF14269 Arylsulfotran_2: Aryl 22.4 5.2E+02 0.011 22.5 13.7 135 2-164 107-258 (299)
45 KOG3545|consensus 21.2 1.1E+02 0.0024 26.5 3.2 33 116-160 179-212 (249)
46 PF13360 PQQ_2: PQQ-like domai 21.1 1.8E+02 0.004 22.9 4.5 26 139-165 45-70 (238)
47 PF03646 FlaG: FlaG protein; 20.2 1.1E+02 0.0023 22.2 2.7 17 141-158 69-85 (107)
No 1
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=99.90 E-value=2.9e-24 Score=185.79 Aligned_cols=80 Identities=44% Similarity=0.886 Sum_probs=65.7
Q ss_pred eEEEEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCCcccCCCCCcceEEEECCCCCcccc
Q psy1450 106 TSVFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDSQIAANSLPLTIVIDTRNPQCTRQ 185 (187)
Q Consensus 106 vsV~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~~~~~~S~lndl~VD~~~g~c~~~ 185 (187)
+||++++||+||||||||+|.++..+. +.+.|+||||+|||+| ++++|+|+||++++++.|+||||+||.++++|+++
T Consensus 1 ~sV~~v~iD~~~rLWVlD~G~~~~~~~-~~~~~~pKLv~~Dl~t-~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~ 78 (287)
T PF03022_consen 1 VSVQRVQIDECGRLWVLDSGRPNGLQP-PKQVCPPKLVAFDLKT-NQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDG 78 (287)
T ss_dssp S-EEEEEE-TTSEEEEEE-CCHSSSST-TGHTS--EEEEEETTT-TCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SE
T ss_pred CcccEEEEcCCCCEEEEeCCCcCCCCC-CCCCCCcEEEEEECCC-CcEEEEEECChHHcccccccceEEEEccCCCCcce
Confidence 699999999999999999999987554 5679999999999999 99999999999999999999999999999899887
Q ss_pred cC
Q psy1450 186 YA 187 (187)
Q Consensus 186 ~~ 187 (187)
||
T Consensus 79 ~a 80 (287)
T PF03022_consen 79 FA 80 (287)
T ss_dssp EE
T ss_pred EE
Confidence 65
No 2
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=93.69 E-value=0.089 Score=29.89 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=19.4
Q ss_pred ceEEEEEEEcCCCcEEEEeCCCC
Q psy1450 105 LTSVFRVEVDECGRLWVLDTGKL 127 (187)
Q Consensus 105 lvsV~~v~iD~~grLWvLDtG~~ 127 (187)
|....++.+|++|.|||.|++.-
T Consensus 1 f~~P~gvav~~~g~i~VaD~~n~ 23 (28)
T PF01436_consen 1 FNYPHGVAVDSDGNIYVADSGNH 23 (28)
T ss_dssp BSSEEEEEEETTSEEEEEECCCT
T ss_pred CcCCcEEEEeCCCCEEEEECCCC
Confidence 34578999999999999998863
No 3
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.97 E-value=0.32 Score=42.98 Aligned_cols=55 Identities=27% Similarity=0.294 Sum_probs=43.9
Q ss_pred eEEEEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCCcccCCCCCcceEEEECC
Q psy1450 106 TSVFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDSQIAANSLPLTIVIDTR 178 (187)
Q Consensus 106 vsV~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~~~~~~S~lndl~VD~~ 178 (187)
-+.+.|+++++|-+||.|+|.. |..+|.+| . .+.++.||.+. ...-|+..++|..
T Consensus 104 a~Phgiv~gpdg~~Witd~~~a--------------I~R~dpkt-~-evt~f~lp~~~--a~~nlet~vfD~~ 158 (353)
T COG4257 104 ASPHGIVVGPDGSAWITDTGLA--------------IGRLDPKT-L-EVTRFPLPLEH--ADANLETAVFDPW 158 (353)
T ss_pred CCCceEEECCCCCeeEecCcce--------------eEEecCcc-c-ceEEeeccccc--CCCcccceeeCCC
Confidence 3567899999999999999973 67788888 4 45689999653 4567899999976
No 4
>PF07494 Reg_prop: Two component regulator propeller; InterPro: IPR011110 A large group of two component regulator proteins appear to have the same N-terminal structure of 14 tandem repeats. These repeats show homology to members of IPR002372 from INTERPRO and IPR001680 from INTERPRO indicating that they are likely to form a beta-propeller. This family has been built with artificially high cut-offs in order to avoid overlaps with other beta-propeller families. The fourteen repeats are likely to form two propellers; it is not clear if these structures are likely to recruit other proteins or interact with DNA.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=90.55 E-value=0.3 Score=26.78 Aligned_cols=16 Identities=25% Similarity=0.787 Sum_probs=13.3
Q ss_pred eEEEEEEEcCCCcEEE
Q psy1450 106 TSVFRVEVDECGRLWV 121 (187)
Q Consensus 106 vsV~~v~iD~~grLWv 121 (187)
..|+.|..|.+|+|||
T Consensus 5 n~I~~i~~D~~G~lWi 20 (24)
T PF07494_consen 5 NNIYSIYEDSDGNLWI 20 (24)
T ss_dssp SCEEEEEE-TTSCEEE
T ss_pred CeEEEEEEcCCcCEEE
Confidence 3688999999999998
No 5
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=89.96 E-value=3.6 Score=33.82 Aligned_cols=103 Identities=19% Similarity=0.216 Sum_probs=65.0
Q ss_pred CCCeEeeeEecCCCCcCCCCCCCCCcEEEEecCCCCCCC---ceeEEEECCCCCCCCCCccCCCCccccCCCCCCCceEE
Q psy1450 32 SSVAILDVDVFDPANYGNASGNKEKRIFVTTPKLRTGIP---VTLSTLSSKRSKDGSPLLEPFPNWDAHSEGNCDGLTSV 108 (187)
Q Consensus 32 ~~~~p~gv~v~~~~~~~~~~~~~~gRvFvt~PR~~~gvp---~TL~~v~~~~~~~~~p~l~PYP~~~~n~~~~~~~lvsV 108 (187)
....|.++++++ +|++|+|-+....... -.|-.+.. + ...+.. ...+...
T Consensus 84 ~~~~~ND~~vd~-----------~G~ly~t~~~~~~~~~~~~g~v~~~~~-~-----~~~~~~----------~~~~~~p 136 (246)
T PF08450_consen 84 PFNRPNDVAVDP-----------DGNLYVTDSGGGGASGIDPGSVYRIDP-D-----GKVTVV----------ADGLGFP 136 (246)
T ss_dssp CTEEEEEEEE-T-----------TS-EEEEEECCBCTTCGGSEEEEEEET-T-----SEEEEE----------EEEESSE
T ss_pred ccCCCceEEEcC-----------CCCEEEEecCCCccccccccceEEECC-C-----CeEEEE----------ecCcccc
Confidence 467899999997 8999999997643222 34666655 2 121111 1346778
Q ss_pred EEEEEcCCCc-EEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCe-EEEE---EECCCcccCCCCCcceEEEECC
Q psy1450 109 FRVEVDECGR-LWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDK-VILR---HKFPDSQIAANSLPLTIVIDTR 178 (187)
Q Consensus 109 ~~v~iD~~gr-LWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~-vi~~---~~lp~~~~~~~S~lndl~VD~~ 178 (187)
.+|.++++++ |+|.|++.- +|..||+..... +..+ +.++.. ..+...|+||..
T Consensus 137 NGi~~s~dg~~lyv~ds~~~-------------~i~~~~~~~~~~~~~~~~~~~~~~~~----~g~pDG~~vD~~ 194 (246)
T PF08450_consen 137 NGIAFSPDGKTLYVADSFNG-------------RIWRFDLDADGGELSNRRVFIDFPGG----PGYPDGLAVDSD 194 (246)
T ss_dssp EEEEEETTSSEEEEEETTTT-------------EEEEEEEETTTCCEEEEEEEEE-SSS----SCEEEEEEEBTT
T ss_pred cceEECCcchheeecccccc-------------eeEEEeccccccceeeeeeEEEcCCC----CcCCCcceEcCC
Confidence 8999999885 899898764 599999975122 3322 233332 245778888875
No 6
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=84.23 E-value=2.9 Score=34.39 Aligned_cols=40 Identities=35% Similarity=0.533 Sum_probs=31.0
Q ss_pred EEEEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCC
Q psy1450 107 SVFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPD 161 (187)
Q Consensus 107 sV~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~ 161 (187)
..-++.+|..|+|||-+.+. -+|++||.. ++++++|.+|.
T Consensus 185 ~pDG~~vD~~G~l~va~~~~-------------~~I~~~~p~--G~~~~~i~~p~ 224 (246)
T PF08450_consen 185 YPDGLAVDSDGNLWVADWGG-------------GRIVVFDPD--GKLLREIELPV 224 (246)
T ss_dssp EEEEEEEBTTS-EEEEEETT-------------TEEEEEETT--SCEEEEEE-SS
T ss_pred CCCcceEcCCCCEEEEEcCC-------------CEEEEECCC--ccEEEEEcCCC
Confidence 36689999999999987744 279999976 67999999994
No 7
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=81.35 E-value=7.7 Score=22.70 Aligned_cols=32 Identities=25% Similarity=0.360 Sum_probs=25.1
Q ss_pred CCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCC
Q psy1450 116 CGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPD 161 (187)
Q Consensus 116 ~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~ 161 (187)
.++|||.+.|. -+|.+||+++ .++++++....
T Consensus 3 ~~~lyv~~~~~-------------~~v~~id~~~-~~~~~~i~vg~ 34 (42)
T TIGR02276 3 GTKLYVTNSGS-------------NTVSVIDTAT-NKVIATIPVGG 34 (42)
T ss_pred CCEEEEEeCCC-------------CEEEEEECCC-CeEEEEEECCC
Confidence 45688887653 2688899999 99999998853
No 8
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=80.25 E-value=17 Score=37.33 Aligned_cols=45 Identities=29% Similarity=0.355 Sum_probs=33.9
Q ss_pred CCCceEEEEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEE--EEEECC
Q psy1450 102 CDGLTSVFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVI--LRHKFP 160 (187)
Q Consensus 102 ~~~lvsV~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi--~~~~lp 160 (187)
...|....+|.+|++|+|+|.|++.- .|-.||+.+ .+++ .+..|.
T Consensus 855 ~a~l~~P~GIavd~dG~lyVaDt~Nn-------------~Irvid~~~-~~~~~~~~l~~~ 901 (1057)
T PLN02919 855 KAQLSEPAGLALGENGRLFVADTNNS-------------LIRYLDLNK-GEAAEILTLELK 901 (1057)
T ss_pred ccccCCceEEEEeCCCCEEEEECCCC-------------EEEEEECCC-CccceeEeeccc
Confidence 34677899999999999999998763 477888888 7653 344443
No 9
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=79.57 E-value=5.3 Score=35.78 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=36.5
Q ss_pred CCceEEEEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCCcccCCCCCcceEE
Q psy1450 103 DGLTSVFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDSQIAANSLPLTIV 174 (187)
Q Consensus 103 ~~lvsV~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~~~~~~S~lndl~ 174 (187)
++|.-..+.+- -+|+||++|+|.- ++..+|+.+ ++....-.+|. ..+--.|+.++.
T Consensus 200 ~GLsmPhSPRW-hdgrLwvldsgtG-------------ev~~vD~~~-G~~e~Va~vpG-~~rGL~f~G~ll 255 (335)
T TIGR03032 200 SGLSMPHSPRW-YQGKLWLLNSGRG-------------ELGYVDPQA-GKFQPVAFLPG-FTRGLAFAGDFA 255 (335)
T ss_pred cCccCCcCCcE-eCCeEEEEECCCC-------------EEEEEcCCC-CcEEEEEECCC-CCcccceeCCEE
Confidence 45555555555 4799999999984 477888887 76666677764 333334444444
No 10
>KOG4499|consensus
Probab=74.35 E-value=5 Score=34.90 Aligned_cols=43 Identities=26% Similarity=0.406 Sum_probs=33.6
Q ss_pred EEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCCcccCC
Q psy1450 110 RVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDSQIAA 166 (187)
Q Consensus 110 ~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~~~~~ 166 (187)
++.||..|.|||-= -...++..+|+.| ++++..+.||-+.+..
T Consensus 216 Gm~ID~eG~L~Va~-------------~ng~~V~~~dp~t-GK~L~eiklPt~qits 258 (310)
T KOG4499|consen 216 GMTIDTEGNLYVAT-------------FNGGTVQKVDPTT-GKILLEIKLPTPQITS 258 (310)
T ss_pred cceEccCCcEEEEE-------------ecCcEEEEECCCC-CcEEEEEEcCCCceEE
Confidence 56789999999731 1145899999999 9999999999665544
No 11
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=67.96 E-value=5.5 Score=35.86 Aligned_cols=43 Identities=30% Similarity=0.442 Sum_probs=30.6
Q ss_pred CCCcEEEE-eCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCCcc
Q psy1450 115 ECGRLWVL-DTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDSQ 163 (187)
Q Consensus 115 ~~grLWvL-DtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~~ 163 (187)
+.+||+|| +.|.. |. -...+-.|++||++| .+.++|++|+..+
T Consensus 248 ~~~rlyvLMh~g~~---gs--HKdpgteVWv~D~~t-~krv~Ri~l~~~~ 291 (342)
T PF06433_consen 248 ASGRLYVLMHQGGE---GS--HKDPGTEVWVYDLKT-HKRVARIPLEHPI 291 (342)
T ss_dssp TTTEEEEEEEE--T---T---TTS-EEEEEEEETTT-TEEEEEEEEEEEE
T ss_pred ccCeEEEEecCCCC---CC--ccCCceEEEEEECCC-CeEEEEEeCCCcc
Confidence 68899987 43432 33 233456899999999 9999999997654
No 12
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=66.97 E-value=18 Score=31.69 Aligned_cols=64 Identities=22% Similarity=0.335 Sum_probs=47.6
Q ss_pred EEEEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCCcc---------cCCCCCcceEEEEC
Q psy1450 107 SVFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDSQ---------IAANSLPLTIVIDT 177 (187)
Q Consensus 107 sV~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~~---------~~~~S~lndl~VD~ 177 (187)
-.-+|++...|.+||-|-|... . ...|.|+.||+. +++++++.+|... ...+..|..|++..
T Consensus 86 D~Egi~~~~~g~~~is~E~~~~---~----~~~p~I~~~~~~--G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~ 156 (326)
T PF13449_consen 86 DPEGIAVPPDGSFWISSEGGRT---G----GIPPRIRRFDLD--GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSP 156 (326)
T ss_pred ChhHeEEecCCCEEEEeCCccC---C----CCCCEEEEECCC--CcccceEccccccccccCccccccCCCCeEEEEECC
Confidence 3445666789999999999952 1 128999999965 6789999999865 33466788888876
Q ss_pred CC
Q psy1450 178 RN 179 (187)
Q Consensus 178 ~~ 179 (187)
..
T Consensus 157 dG 158 (326)
T PF13449_consen 157 DG 158 (326)
T ss_pred CC
Confidence 63
No 13
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=63.30 E-value=29 Score=30.52 Aligned_cols=55 Identities=24% Similarity=0.346 Sum_probs=35.1
Q ss_pred EEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCCcccCC----CCCcceEEEEC
Q psy1450 109 FRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDSQIAA----NSLPLTIVIDT 177 (187)
Q Consensus 109 ~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~~~~~----~S~lndl~VD~ 177 (187)
=++.+|++|.||+ .+.. + .-+|.+|+.. .+++++|.+|...... +--+++|-|=.
T Consensus 216 DG~~vDadG~lw~--~a~~---~-------g~~v~~~~pd--G~l~~~i~lP~~~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 216 DGMAVDADGNLWV--AAVW---G-------GGRVVRFNPD--GKLLGEIKLPVKRPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred CceEEeCCCCEEE--eccc---C-------CceEEEECCC--CcEEEEEECCCCCCccceEeCCCcCEEEEEe
Confidence 3577888888887 2222 1 2479999887 5899999999533332 22255665533
No 14
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=63.06 E-value=22 Score=30.81 Aligned_cols=71 Identities=13% Similarity=0.132 Sum_probs=43.9
Q ss_pred eEeeeEecCCCCcCCCCCCCCCcEEEEecCCCCCCCceeEEEECCCCCCCCCCccCCCCccccC-CCCCCCceEEEEEEE
Q psy1450 35 AILDVDVFDPANYGNASGNKEKRIFVTTPKLRTGIPVTLSTLSSKRSKDGSPLLEPFPNWDAHS-EGNCDGLTSVFRVEV 113 (187)
Q Consensus 35 ~p~gv~v~~~~~~~~~~~~~~gRvFvt~PR~~~gvp~TL~~v~~~~~~~~~p~l~PYP~~~~n~-~~~~~~lvsV~~v~i 113 (187)
.-.|+++++ +|.+|++...- .++..... + +||.-..... ..+...|+.+-++.+
T Consensus 187 ~s~g~~~D~-----------~G~ly~~~~~~-----~aI~~w~~-~--------~~~~~~~~~~l~~d~~~l~~pd~~~i 241 (287)
T PF03022_consen 187 QSDGMAIDP-----------NGNLYFTDVEQ-----NAIGCWDP-D--------GPYTPENFEILAQDPRTLQWPDGLKI 241 (287)
T ss_dssp SECEEEEET-----------TTEEEEEECCC-----TEEEEEET-T--------TSB-GCCEEEEEE-CC-GSSEEEEEE
T ss_pred CCceEEECC-----------CCcEEEecCCC-----CeEEEEeC-C--------CCcCccchheeEEcCceeeccceeee
Confidence 457888886 89999998862 25666654 2 4554333331 234556999999999
Q ss_pred cC--CCcEEEEeCCCCCCC
Q psy1450 114 DE--CGRLWVLDTGKLNAF 130 (187)
Q Consensus 114 D~--~grLWvLDtG~~~~~ 130 (187)
|. +|.||||=.-.....
T Consensus 242 ~~~~~g~L~v~snrl~~~~ 260 (287)
T PF03022_consen 242 DPEGDGYLWVLSNRLQRFA 260 (287)
T ss_dssp -T--TS-EEEEE-S--SST
T ss_pred ccccCceEEEEECcchHhh
Confidence 99 999999988776543
No 15
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=62.54 E-value=15 Score=32.18 Aligned_cols=81 Identities=19% Similarity=0.266 Sum_probs=42.9
Q ss_pred CCeEeeeEecCCCCcCCCCCCCCCcEEEEecCCCC-----C---CCceeEEEECCCCCCCCCCccCCCCccccCCC-CCC
Q psy1450 33 SVAILDVDVFDPANYGNASGNKEKRIFVTTPKLRT-----G---IPVTLSTLSSKRSKDGSPLLEPFPNWDAHSEG-NCD 103 (187)
Q Consensus 33 ~~~p~gv~v~~~~~~~~~~~~~~gRvFvt~PR~~~-----g---vp~TL~~v~~~~~~~~~p~l~PYP~~~~n~~~-~~~ 103 (187)
.+---++++.. +|.||+++=--.. . ..-.+-.+.. + + .-|.--||-+..-.... =+.
T Consensus 113 ~H~g~~l~fgp-----------DG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~-d-G-~~p~dnP~~~~~~~~~~i~A~ 178 (331)
T PF07995_consen 113 NHNGGGLAFGP-----------DGKLYVSVGDGGNDDNAQDPNSLRGKILRIDP-D-G-SIPADNPFVGDDGADSEIYAY 178 (331)
T ss_dssp SS-EEEEEE-T-----------TSEEEEEEB-TTTGGGGCSTTSSTTEEEEEET-T-S-SB-TTSTTTTSTTSTTTEEEE
T ss_pred CCCCccccCCC-----------CCcEEEEeCCCCCcccccccccccceEEEecc-c-C-cCCCCCccccCCCceEEEEEe
Confidence 44455677776 8999999864322 1 1123444443 2 1 11222344321100000 156
Q ss_pred CceEEEEEEEcCC-CcEEEEeCCCC
Q psy1450 104 GLTSVFRVEVDEC-GRLWVLDTGKL 127 (187)
Q Consensus 104 ~lvsV~~v~iD~~-grLWvLDtG~~ 127 (187)
+|-+.+++..|+. |+||+.|.|.-
T Consensus 179 GlRN~~~~~~d~~tg~l~~~d~G~~ 203 (331)
T PF07995_consen 179 GLRNPFGLAFDPNTGRLWAADNGPD 203 (331)
T ss_dssp --SEEEEEEEETTTTEEEEEEE-SS
T ss_pred CCCccccEEEECCCCcEEEEccCCC
Confidence 8999999999999 99999999874
No 16
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=59.94 E-value=20 Score=31.80 Aligned_cols=25 Identities=20% Similarity=0.458 Sum_probs=22.2
Q ss_pred CCCceEEEEEEEcCCCcEEEEeCCC
Q psy1450 102 CDGLTSVFRVEVDECGRLWVLDTGK 126 (187)
Q Consensus 102 ~~~lvsV~~v~iD~~grLWvLDtG~ 126 (187)
+.++.+.+++.+|+.|.||+-|.+.
T Consensus 180 a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 180 AHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCcCCCccceECCCCCEEEEccCC
Confidence 5679999999999999999999853
No 17
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=58.79 E-value=24 Score=20.83 Aligned_cols=24 Identities=13% Similarity=0.133 Sum_probs=20.2
Q ss_pred CCeEEEEECCCCCeEEEEEECCCcc
Q psy1450 139 PPQIVVYDLNQGDKVILRHKFPDSQ 163 (187)
Q Consensus 139 ~pKLv~~Dl~t~d~vi~~~~lp~~~ 163 (187)
.-.|+++|.+| ++++-+|.....+
T Consensus 9 ~g~l~AlD~~T-G~~~W~~~~~~~~ 32 (38)
T PF01011_consen 9 DGYLYALDAKT-GKVLWKFQTGPPV 32 (38)
T ss_dssp TSEEEEEETTT-TSEEEEEESSSGG
T ss_pred CCEEEEEECCC-CCEEEeeeCCCCC
Confidence 35799999999 9999999987643
No 18
>PF13645 YkuD_2: L,D-transpeptidase catalytic domain
Probab=57.25 E-value=26 Score=28.65 Aligned_cols=37 Identities=19% Similarity=0.245 Sum_probs=29.4
Q ss_pred EcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEEC
Q psy1450 113 VDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKF 159 (187)
Q Consensus 113 iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~l 159 (187)
+...++|-|+|...+ .. .+++++|||++ ++++.....
T Consensus 31 ~~~~~~l~iIDfs~p---S~------~~R~~v~Dl~~-~~~l~~~~V 67 (176)
T PF13645_consen 31 IYNKDILTIIDFSKP---SG------EKRFFVIDLKK-GKLLYNTLV 67 (176)
T ss_pred CCCCCeEEEEECCCC---CC------CCeEEEEECCC-CEEEEeeee
Confidence 335788999999998 32 67999999999 998875443
No 19
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=56.82 E-value=30 Score=30.66 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=28.0
Q ss_pred ceEEEEEEEcCCCcEEEEeCCCCCCCCCCCcccCC-CeEEEEECCC
Q psy1450 105 LTSVFRVEVDECGRLWVLDTGKLNAFGETPKVVCP-PQIVVYDLNQ 149 (187)
Q Consensus 105 lvsV~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~-pKLv~~Dl~t 149 (187)
|.+...|.+|++|||||.++..--. .. ...... -+|++++-.+
T Consensus 13 ~~~P~~ia~d~~G~l~V~e~~~y~~-~~-~~~~~~~~rI~~l~d~d 56 (367)
T TIGR02604 13 LRNPIAVCFDERGRLWVAEGITYSR-PA-GRQGPLGDRILILEDAD 56 (367)
T ss_pred cCCCceeeECCCCCEEEEeCCcCCC-CC-CCCCCCCCEEEEEEcCC
Confidence 6778899999999999999854210 11 011112 2788887654
No 20
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=52.29 E-value=63 Score=29.14 Aligned_cols=47 Identities=13% Similarity=0.181 Sum_probs=33.7
Q ss_pred EEEc-CCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCCc
Q psy1450 111 VEVD-ECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDS 162 (187)
Q Consensus 111 v~iD-~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~ 162 (187)
+.+. +.+||||+-.|... |. -...+-.+.+||++| .++++++.+...
T Consensus 253 ia~~~dg~~lyV~~~~~~~--~t--hk~~~~~V~ViD~~t-~kvi~~i~vG~~ 300 (352)
T TIGR02658 253 VAYHRARDRIYLLADQRAK--WT--HKTASRFLFVVDAKT-GKRLRKIELGHE 300 (352)
T ss_pred EEEcCCCCEEEEEecCCcc--cc--ccCCCCEEEEEECCC-CeEEEEEeCCCc
Confidence 6666 46899996655542 32 122345899999999 999999998654
No 21
>smart00284 OLF Olfactomedin-like domains.
Probab=47.01 E-value=1.1e+02 Score=26.35 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=49.2
Q ss_pred eeeEecCCCCcCCCCCCCCCcEEEEecCCCCCCCceeEEEECCCCCCCCCCccCCCCccccCC----CCCCCceEEEEEE
Q psy1450 37 LDVDVFDPANYGNASGNKEKRIFVTTPKLRTGIPVTLSTLSSKRSKDGSPLLEPFPNWDAHSE----GNCDGLTSVFRVE 112 (187)
Q Consensus 37 ~gv~v~~~~~~~~~~~~~~gRvFvt~PR~~~gvp~TL~~v~~~~~~~~~p~l~PYP~~~~n~~----~~~~~lvsV~~v~ 112 (187)
++++|+ +.-|.+-++.-...--..|+.+.. . .|.- -..|+.. +-+++|+
T Consensus 131 iDlAvD------------E~GLWvIYat~~~~g~ivvSkLnp-~------tL~v--e~tW~T~~~k~sa~naFm------ 183 (255)
T smart00284 131 IDLAVD------------ENGLWVIYATEQNAGKIVISKLNP-A------TLTI--ENTWITTYNKRSASNAFM------ 183 (255)
T ss_pred EEEEEc------------CCceEEEEeccCCCCCEEEEeeCc-c------cceE--EEEEEcCCCcccccccEE------
Confidence 678888 677888887754332455666654 2 2222 1234321 1133343
Q ss_pred EcCCCcEEEEeCCCCCCCCCCCcccCCCe-EEEEECCCCCeEEE-EEECCC
Q psy1450 113 VDECGRLWVLDTGKLNAFGETPKVVCPPQ-IVVYDLNQGDKVIL-RHKFPD 161 (187)
Q Consensus 113 iD~~grLWvLDtG~~~~~~~~~~~~~~pK-Lv~~Dl~t~d~vi~-~~~lp~ 161 (187)
.||.|.++++... . ..+ -.+||+.| ++... .++|+.
T Consensus 184 --vCGvLY~~~s~~~---~-------~~~I~yayDt~t-~~~~~~~i~f~n 221 (255)
T smart00284 184 --ICGILYVTRSLGS---K-------GEKVFYAYDTNT-GKEGHLDIPFEN 221 (255)
T ss_pred --EeeEEEEEccCCC---C-------CcEEEEEEECCC-Cccceeeeeecc
Confidence 4999999998543 1 223 47999999 65443 366654
No 22
>KOG0649|consensus
Probab=45.35 E-value=28 Score=30.51 Aligned_cols=47 Identities=11% Similarity=0.147 Sum_probs=38.8
Q ss_pred CCCeEEEEECCCCCeEEEEEECCCcccCCCCCcceEEEECCCCCccccc
Q psy1450 138 CPPQIVVYDLNQGDKVILRHKFPDSQIAANSLPLTIVIDTRNPQCTRQY 186 (187)
Q Consensus 138 ~~pKLv~~Dl~t~d~vi~~~~lp~~~~~~~S~lndl~VD~~~g~c~~~~ 186 (187)
++|||-.|.|+. -+-..+|+||+.+ +--.|..|.++-...|+|-..|
T Consensus 225 gGp~lslwhLrs-se~t~vfpipa~v-~~v~F~~d~vl~~G~g~~v~~~ 271 (325)
T KOG0649|consen 225 GGPKLSLWHLRS-SESTCVFPIPARV-HLVDFVDDCVLIGGEGNHVQSY 271 (325)
T ss_pred CCCceeEEeccC-CCceEEEecccce-eEeeeecceEEEeccccceeee
Confidence 369999999999 9999999999863 4467888888888878887654
No 23
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=43.46 E-value=35 Score=30.41 Aligned_cols=52 Identities=21% Similarity=0.390 Sum_probs=39.1
Q ss_pred EEEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCCcccCCCCCcceEEEECC
Q psy1450 108 VFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDSQIAANSLPLTIVIDTR 178 (187)
Q Consensus 108 V~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~~~~~~S~lndl~VD~~ 178 (187)
--++-.|+.||+|+-+.|.. +|..||..+ .. =+.|.||..-.+ --+++||..
T Consensus 235 sRriwsdpig~~wittwg~g-------------~l~rfdPs~-~s-W~eypLPgs~ar----pys~rVD~~ 286 (353)
T COG4257 235 SRRIWSDPIGRAWITTWGTG-------------SLHRFDPSV-TS-WIEYPLPGSKAR----PYSMRVDRH 286 (353)
T ss_pred ccccccCccCcEEEeccCCc-------------eeeEeCccc-cc-ceeeeCCCCCCC----cceeeeccC
Confidence 34667899999999876653 689999988 55 789999975333 356788875
No 24
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=40.78 E-value=35 Score=24.70 Aligned_cols=55 Identities=15% Similarity=0.227 Sum_probs=31.3
Q ss_pred EEEEcCC-CcEEEEeCCCCCCCCC----CCcccCCCeEEEEECCCCCe---EEEEEECCCcccC
Q psy1450 110 RVEVDEC-GRLWVLDTGKLNAFGE----TPKVVCPPQIVVYDLNQGDK---VILRHKFPDSQIA 165 (187)
Q Consensus 110 ~v~iD~~-grLWvLDtG~~~~~~~----~~~~~~~pKLv~~Dl~t~d~---vi~~~~lp~~~~~ 165 (187)
++.|+++ |.+++-|+-.--...+ .-...+.-+|+.+|++| ++ ++.-..||..+..
T Consensus 2 dldv~~~~g~vYfTdsS~~~~~~~~~~~~le~~~~GRll~ydp~t-~~~~vl~~~L~fpNGVal 64 (89)
T PF03088_consen 2 DLDVDQDTGTVYFTDSSSRYDRRDWVYDLLEGRPTGRLLRYDPST-KETTVLLDGLYFPNGVAL 64 (89)
T ss_dssp EEEE-TTT--EEEEES-SS--TTGHHHHHHHT---EEEEEEETTT-TEEEEEEEEESSEEEEEE
T ss_pred ceeEecCCCEEEEEeCccccCccceeeeeecCCCCcCEEEEECCC-CeEEEehhCCCccCeEEE
Confidence 5788888 9999999965321111 00123456999999999 75 5666777765533
No 25
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=39.60 E-value=2.2e+02 Score=24.25 Aligned_cols=91 Identities=18% Similarity=0.172 Sum_probs=52.0
Q ss_pred EeeeEecCCCCcCCCCCCCCCcEEEEecCCCCCCCceeEEEECCCCCCCCCCccCCCCccccCCCCCCCceEEEEEEEcC
Q psy1450 36 ILDVDVFDPANYGNASGNKEKRIFVTTPKLRTGIPVTLSTLSSKRSKDGSPLLEPFPNWDAHSEGNCDGLTSVFRVEVDE 115 (187)
Q Consensus 36 p~gv~v~~~~~~~~~~~~~~gRvFvt~PR~~~gvp~TL~~v~~~~~~~~~p~l~PYP~~~~n~~~~~~~lvsV~~v~iD~ 115 (187)
=++++|+ +.-|.|-.+.-...--..|+.++. . .|.. -..|+..-+. .++-..-+ .
T Consensus 125 ~iD~AvD------------E~GLWvIYat~~~~g~ivvskld~-~------tL~v--~~tw~T~~~k---~~~~naFm-v 179 (250)
T PF02191_consen 125 DIDFAVD------------ENGLWVIYATEDNNGNIVVSKLDP-E------TLSV--EQTWNTSYPK---RSAGNAFM-V 179 (250)
T ss_pred eEEEEEc------------CCCEEEEEecCCCCCcEEEEeeCc-c------cCce--EEEEEeccCc---hhhcceee-E
Confidence 3688888 788888888865432356666655 3 2222 2344421111 11111122 5
Q ss_pred CCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCe-EEEEEECCC
Q psy1450 116 CGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDK-VILRHKFPD 161 (187)
Q Consensus 116 ~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~-vi~~~~lp~ 161 (187)
||.|.++|+... .. .-=-.+||+.| ++ ..-.+.|+.
T Consensus 180 CGvLY~~~s~~~---~~------~~I~yafDt~t-~~~~~~~i~f~~ 216 (250)
T PF02191_consen 180 CGVLYATDSYDT---RD------TEIFYAFDTYT-GKEEDVSIPFPN 216 (250)
T ss_pred eeEEEEEEECCC---CC------cEEEEEEECCC-Cceeceeeeecc
Confidence 999999999876 21 11357999999 55 444455543
No 26
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=35.37 E-value=1e+02 Score=27.16 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=26.8
Q ss_pred CCceEEEEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEEC
Q psy1450 103 DGLTSVFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDL 147 (187)
Q Consensus 103 ~~lvsV~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl 147 (187)
..+..-....+|++|++|+=|++..+ .+...... ...|+.+|.
T Consensus 108 ~~~~r~ND~~v~pdG~~wfgt~~~~~-~~~~~~~~-~G~lyr~~p 150 (307)
T COG3386 108 LPLNRPNDGVVDPDGRIWFGDMGYFD-LGKSEERP-TGSLYRVDP 150 (307)
T ss_pred CCcCCCCceeEcCCCCEEEeCCCccc-cCccccCC-cceEEEEcC
Confidence 44566777899999999999999311 01100111 227777775
No 27
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=32.66 E-value=98 Score=26.43 Aligned_cols=40 Identities=23% Similarity=0.414 Sum_probs=30.2
Q ss_pred CCCeEEEEECCCCCeEEEEEECCCcccCC-------CCCcceEEEECC
Q psy1450 138 CPPQIVVYDLNQGDKVILRHKFPDSQIAA-------NSLPLTIVIDTR 178 (187)
Q Consensus 138 ~~pKLv~~Dl~t~d~vi~~~~lp~~~~~~-------~S~lndl~VD~~ 178 (187)
...+|+.|||++ .++..+-.||...... ..---||+||..
T Consensus 87 ~s~~IvkydL~t-~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~ 133 (250)
T PF02191_consen 87 NSRNIVKYDLTT-RSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDEN 133 (250)
T ss_pred CCceEEEEECcC-CcEEEEEECCccccccccceecCCCceEEEEEcCC
Confidence 568999999999 9999899998765542 112358888854
No 28
>smart00284 OLF Olfactomedin-like domains.
Probab=31.65 E-value=99 Score=26.73 Aligned_cols=40 Identities=10% Similarity=0.153 Sum_probs=28.8
Q ss_pred CCCeEEEEECCCCCeEEEEEECCCcccCC-------CCCcceEEEECC
Q psy1450 138 CPPQIVVYDLNQGDKVILRHKFPDSQIAA-------NSLPLTIVIDTR 178 (187)
Q Consensus 138 ~~pKLv~~Dl~t~d~vi~~~~lp~~~~~~-------~S~lndl~VD~~ 178 (187)
..+.|+.|||++ .++..+-.||...... ..---||+||..
T Consensus 92 ~s~~iiKydL~t-~~v~~~~~Lp~a~y~~~~~Y~~~~~sdiDlAvDE~ 138 (255)
T smart00284 92 NSHDICRFDLTT-ETYQKEPLLNGAGYNNRFPYAWGGFSDIDLAVDEN 138 (255)
T ss_pred CCccEEEEECCC-CcEEEEEecCccccccccccccCCCccEEEEEcCC
Confidence 357899999999 9998888898643332 112368888875
No 29
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=31.55 E-value=44 Score=26.80 Aligned_cols=62 Identities=24% Similarity=0.420 Sum_probs=35.9
Q ss_pred CccCCCCccccCCCCCCCceEEEEEEEcCCCcEEEEeCCC--CCCCCCCCcccCC-CeEEEEECCCCCeEEEEEEC
Q psy1450 87 LLEPFPNWDAHSEGNCDGLTSVFRVEVDECGRLWVLDTGK--LNAFGETPKVVCP-PQIVVYDLNQGDKVILRHKF 159 (187)
Q Consensus 87 ~l~PYP~~~~n~~~~~~~lvsV~~v~iD~~grLWvLDtG~--~~~~~~~~~~~~~-pKLv~~Dl~t~d~vi~~~~l 159 (187)
.++=||+|+| .+|.=...|+-+..||==-|. +.++|- |.-.|. -=|-.|.|.. +++.+.=+|
T Consensus 74 slkcFPDWeW---------~nv~ifeT~DP~~fwVEcdG~G~i~fpGy-peg~y~NHfiHsFel~n-GkI~~~REF 138 (162)
T PF03284_consen 74 SLKCFPDWEW---------YNVRIFETQDPNHFWVECDGRGKILFPGY-PEGYYENHFIHSFELEN-GKIKRNREF 138 (162)
T ss_dssp HHHHSTT-EE---------EEEEEEEBSSTTEEEEEEEEEEEE--TTS---EEEEEEEEEEEEEET-TEEEEEEEE
T ss_pred HHHHCCCcEE---------EEEEeecccCCCEEEEEecCccceecCCC-CcccceeeeEEEEEeeC-CEEEeehhh
Confidence 4567999999 566666677778888865443 323332 221222 3467777777 777665554
No 30
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=31.54 E-value=84 Score=27.33 Aligned_cols=47 Identities=21% Similarity=0.246 Sum_probs=34.1
Q ss_pred eEEEEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCCccc
Q psy1450 106 TSVFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDSQI 164 (187)
Q Consensus 106 vsV~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~~~ 164 (187)
.-.|++.++.+|+||. =||.- +.-+|-.+|+.| ++++++..||+...
T Consensus 45 aFTQGL~~~~~g~LyE-STG~y----------G~S~l~~~d~~t-g~~~~~~~l~~~~F 91 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYE-STGLY----------GQSSLRKVDLET-GKVLQSVPLPPRYF 91 (264)
T ss_dssp -EEEEEEEEETTEEEE-EECST----------TEEEEEEEETTT-SSEEEEEE-TTT--
T ss_pred ccCccEEecCCCEEEE-eCCCC----------CcEEEEEEECCC-CcEEEEEECCcccc
Confidence 4568888877888874 34443 345899999999 99999999998653
No 31
>PRK10380 hypothetical protein; Provisional
Probab=30.95 E-value=1.4e+02 Score=20.28 Aligned_cols=38 Identities=13% Similarity=0.109 Sum_probs=31.1
Q ss_pred CcccCCCeEEEEECCCCCeEEEEEECCCcccCCCCCcc
Q psy1450 134 PKVVCPPQIVVYDLNQGDKVILRHKFPDSQIAANSLPL 171 (187)
Q Consensus 134 ~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~~~~~~S~ln 171 (187)
+..+..++||.++-.+.++-+..|.|-++-.+++|++.
T Consensus 5 PpYPReA~iV~vekG~~g~~vtwyelRaDhp~P~sliS 42 (63)
T PRK10380 5 PPYPREAYIVTIEKGKPGQTVTWYQLRADHPKPDSLIS 42 (63)
T ss_pred CCCCcceEEEEeecCCCCceEEEEEeecCCCCCCcccc
Confidence 44556789999999887889999999888888888664
No 32
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=30.71 E-value=45 Score=29.00 Aligned_cols=40 Identities=18% Similarity=0.135 Sum_probs=29.6
Q ss_pred CCeEEEEECCCCCeEEEEEECCCcccC----------CCCCcceEEEECCCC
Q psy1450 139 PPQIVVYDLNQGDKVILRHKFPDSQIA----------ANSLPLTIVIDTRNP 180 (187)
Q Consensus 139 ~pKLv~~Dl~t~d~vi~~~~lp~~~~~----------~~S~lndl~VD~~~g 180 (187)
.+.|++||..| ++++..|+|.. +.. ....||.|+-|...+
T Consensus 194 td~I~~Idp~t-G~V~~~iDls~-L~~~~~~~~~~~~~~dVLNGIAyd~~~~ 243 (264)
T PF05096_consen 194 TDRIVRIDPET-GKVVGWIDLSG-LRPEVGRDKSRQPDDDVLNGIAYDPETD 243 (264)
T ss_dssp SSEEEEEETTT--BEEEEEE-HH-HHHHHTSTTST--TTS-EEEEEEETTTT
T ss_pred CCeEEEEeCCC-CeEEEEEEhhH-hhhcccccccccccCCeeEeEeEeCCCC
Confidence 58999999999 99999999964 322 135799999998754
No 33
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=30.67 E-value=2.3e+02 Score=24.64 Aligned_cols=54 Identities=26% Similarity=0.415 Sum_probs=30.4
Q ss_pred eEEEEEEEcCCCc-EEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCe--EEE--EEECCCcccCCCCCcceEEEECC
Q psy1450 106 TSVFRVEVDECGR-LWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDK--VIL--RHKFPDSQIAANSLPLTIVIDTR 178 (187)
Q Consensus 106 vsV~~v~iD~~gr-LWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~--vi~--~~~lp~~~~~~~S~lndl~VD~~ 178 (187)
-..+.+.++++|+ |||.|.|.- +|.+|++.. +. +.. .+.+| +.+.-..++++..
T Consensus 144 ~h~H~v~~~pdg~~v~v~dlG~D-------------~v~~~~~~~-~~~~l~~~~~~~~~-----~G~GPRh~~f~pd 202 (345)
T PF10282_consen 144 PHPHQVVFSPDGRFVYVPDLGAD-------------RVYVYDIDD-DTGKLTPVDSIKVP-----PGSGPRHLAFSPD 202 (345)
T ss_dssp TCEEEEEE-TTSSEEEEEETTTT-------------EEEEEEE-T-TS-TEEEEEEEECS-----TTSSEEEEEE-TT
T ss_pred ccceeEEECCCCCEEEEEecCCC-------------EEEEEEEeC-CCceEEEeeccccc-----cCCCCcEEEEcCC
Confidence 4456778888765 899898864 477777766 44 433 33333 2444555555543
No 34
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=29.30 E-value=41 Score=31.46 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=23.3
Q ss_pred CCCceEEEEEEEcCCCcEEEEeCCCC
Q psy1450 102 CDGLTSVFRVEVDECGRLWVLDTGKL 127 (187)
Q Consensus 102 ~~~lvsV~~v~iD~~grLWvLDtG~~ 127 (187)
+-++-+.+++.+|+.|+||+-|.|.-
T Consensus 226 A~G~RNp~Gla~dp~G~Lw~~e~Gp~ 251 (454)
T TIGR03606 226 TYGHRNPQGLAFTPDGTLYASEQGPN 251 (454)
T ss_pred EEeccccceeEECCCCCEEEEecCCC
Confidence 45789999999999999999999974
No 35
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=28.01 E-value=77 Score=18.97 Aligned_cols=18 Identities=22% Similarity=0.071 Sum_probs=15.2
Q ss_pred CeEeeeEecCCCCcCCCCCCCCCcEEEEe
Q psy1450 34 VAILDVDVFDPANYGNASGNKEKRIFVTT 62 (187)
Q Consensus 34 ~~p~gv~v~~~~~~~~~~~~~~gRvFvt~ 62 (187)
..+.+|+++. .|.+||+=
T Consensus 13 ~~~~~IavD~-----------~GNiYv~G 30 (38)
T PF06739_consen 13 DYGNGIAVDS-----------NGNIYVTG 30 (38)
T ss_pred eeEEEEEECC-----------CCCEEEEE
Confidence 4689999997 89999974
No 36
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=27.78 E-value=1.9e+02 Score=26.23 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=48.3
Q ss_pred CcccCCCeEeeeEecCCCCcCCCCCCCCCcEEEEecCCCCC---CCceeEEEECCCCCCCCCCccCCCCccccCCCCCCC
Q psy1450 28 KYNASSVAILDVDVFDPANYGNASGNKEKRIFVTTPKLRTG---IPVTLSTLSSKRSKDGSPLLEPFPNWDAHSEGNCDG 104 (187)
Q Consensus 28 ~y~p~~~~p~gv~v~~~~~~~~~~~~~~gRvFvt~PR~~~g---vp~TL~~v~~~~~~~~~p~l~PYP~~~~n~~~~~~~ 104 (187)
...|..-+++.+... .+||||-|+.-.+| -|.|-..+-..... -++.=.|-. ..
T Consensus 234 ~WrPGG~Q~~A~~~~------------~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~---krv~Ri~l~--------~~ 290 (342)
T PF06433_consen 234 GWRPGGWQLIAYHAA------------SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTH---KRVARIPLE--------HP 290 (342)
T ss_dssp TEEE-SSS-EEEETT------------TTEEEEEEEE--TT-TTS-EEEEEEEETTTT---EEEEEEEEE--------EE
T ss_pred CcCCcceeeeeeccc------------cCeEEEEecCCCCCCccCCceEEEEEECCCC---eEEEEEeCC--------Cc
Confidence 445555555555444 79999999964443 46665555431321 122211210 00
Q ss_pred ceEEEEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEE
Q psy1450 105 LTSVFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHK 158 (187)
Q Consensus 105 lvsV~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~ 158 (187)
+.-.++.-|+.=+|..++.|.- -|.+||..| ++++|+++
T Consensus 291 -~~Si~Vsqd~~P~L~~~~~~~~-------------~l~v~D~~t-Gk~~~~~~ 329 (342)
T PF06433_consen 291 -IDSIAVSQDDKPLLYALSAGDG-------------TLDVYDAAT-GKLVRSIE 329 (342)
T ss_dssp -ESEEEEESSSS-EEEEEETTTT-------------EEEEEETTT---EEEEE-
T ss_pred -cceEEEccCCCcEEEEEcCCCC-------------eEEEEeCcC-CcEEeehh
Confidence 1112223366667888887653 499999999 99999886
No 37
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=27.16 E-value=1.3e+02 Score=31.13 Aligned_cols=40 Identities=20% Similarity=0.178 Sum_probs=32.0
Q ss_pred CceEEEEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEE
Q psy1450 104 GLTSVFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRH 157 (187)
Q Consensus 104 ~lvsV~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~ 157 (187)
.|.+..++.+|++|.|||-|++.- +|.+||+.+ ..+....
T Consensus 802 ~l~~P~Gvavd~dG~LYVADs~N~-------------rIrviD~~t-g~v~tia 841 (1057)
T PLN02919 802 LLQHPLGVLCAKDGQIYVADSYNH-------------KIKKLDPAT-KRVTTLA 841 (1057)
T ss_pred hccCCceeeEeCCCcEEEEECCCC-------------EEEEEECCC-CeEEEEe
Confidence 467788999999999999998753 588899888 7665433
No 38
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=26.80 E-value=74 Score=17.39 Aligned_cols=17 Identities=6% Similarity=0.171 Sum_probs=12.3
Q ss_pred CeEEEEECCCCCeEEEEE
Q psy1450 140 PQIVVYDLNQGDKVILRH 157 (187)
Q Consensus 140 pKLv~~Dl~t~d~vi~~~ 157 (187)
-+|+++|.++ ++++-++
T Consensus 16 g~l~a~d~~~-G~~~W~~ 32 (33)
T smart00564 16 GTLYALDAKT-GEILWTY 32 (33)
T ss_pred CEEEEEEccc-CcEEEEc
Confidence 4788888888 7776543
No 39
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=26.34 E-value=1.9e+02 Score=24.59 Aligned_cols=110 Identities=15% Similarity=0.140 Sum_probs=55.3
Q ss_pred CCCeEeeeEecCCCCcCCCCCCCCCcEEEEecCCCCCCCceeEEEECCCCCCCC---CCccCCCCccccCCCCCCCceEE
Q psy1450 32 SSVAILDVDVFDPANYGNASGNKEKRIFVTTPKLRTGIPVTLSTLSSKRSKDGS---PLLEPFPNWDAHSEGNCDGLTSV 108 (187)
Q Consensus 32 ~~~~p~gv~v~~~~~~~~~~~~~~gRvFvt~PR~~~gvp~TL~~v~~~~~~~~~---p~l~PYP~~~~n~~~~~~~lvsV 108 (187)
.|.=.-|++.+ +..+|+|+. +...|..|-++.. ...... ....+.++ ....+..+
T Consensus 116 ~N~G~EGla~D----------~~~~~L~v~----kE~~P~~l~~~~~-~~~~~~~~~~~~~~~~~-------~~~~~~d~ 173 (248)
T PF06977_consen 116 GNKGFEGLAYD----------PKTNRLFVA----KERKPKRLYEVNG-FPGGFDLFVSDDQDLDD-------DKLFVRDL 173 (248)
T ss_dssp -SS--EEEEEE----------TTTTEEEEE----EESSSEEEEEEES-TT-SS--EEEE-HHHH--------HT--SS--
T ss_pred CCcceEEEEEc----------CCCCEEEEE----eCCCChhhEEEcc-ccCccceeecccccccc-------ccceeccc
Confidence 34445677776 336899987 3446777888865 210000 00011111 11223334
Q ss_pred EEEEEcC-CCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCCccc---CCCCCcceEEEECC
Q psy1450 109 FRVEVDE-CGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDSQI---AANSLPLTIVIDTR 178 (187)
Q Consensus 109 ~~v~iD~-~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~~~---~~~S~lndl~VD~~ 178 (187)
-++.+|+ .|+||||..- .++|+.+| .+ ++++..+.|..... +.--.-..|++|..
T Consensus 174 S~l~~~p~t~~lliLS~e-------------s~~l~~~d-~~-G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~ 232 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDE-------------SRLLLELD-RQ-GRVVSSLSLDRGFHGLSKDIPQPEGIAFDPD 232 (248)
T ss_dssp -EEEEETTTTEEEEEETT-------------TTEEEEE--TT---EEEEEE-STTGGG-SS---SEEEEEE-TT
T ss_pred cceEEcCCCCeEEEEECC-------------CCeEEEEC-CC-CCEEEEEEeCCcccCcccccCCccEEEECCC
Confidence 5566666 7899999532 45899999 66 78999999987422 11223467888864
No 40
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=25.46 E-value=5e+02 Score=23.36 Aligned_cols=78 Identities=10% Similarity=0.115 Sum_probs=46.2
Q ss_pred CCcEEEEecCCCC---CCC-ceeEEEECCCCCCCCCCccCCCCccccCCCCCCCceEEEEEEEcCCCc-EEEEeCCCCCC
Q psy1450 55 EKRIFVTTPKLRT---GIP-VTLSTLSSKRSKDGSPLLEPFPNWDAHSEGNCDGLTSVFRVEVDECGR-LWVLDTGKLNA 129 (187)
Q Consensus 55 ~gRvFvt~PR~~~---gvp-~TL~~v~~~~~~~~~p~l~PYP~~~~n~~~~~~~lvsV~~v~iD~~gr-LWvLDtG~~~~ 129 (187)
.+|+||.+..-.+ --| -.|..++. .... .+.=.|- =..+.++.+.++|+ +-+.-.+..
T Consensus 259 g~~lyV~~~~~~~~thk~~~~~V~ViD~-~t~k---vi~~i~v-----------G~~~~~iavS~Dgkp~lyvtn~~s-- 321 (352)
T TIGR02658 259 RDRIYLLADQRAKWTHKTASRFLFVVDA-KTGK---RLRKIEL-----------GHEIDSINVSQDAKPLLYALSTGD-- 321 (352)
T ss_pred CCEEEEEecCCccccccCCCCEEEEEEC-CCCe---EEEEEeC-----------CCceeeEEECCCCCeEEEEeCCCC--
Confidence 6999997754221 123 35777776 3221 1111111 12567788888887 333333332
Q ss_pred CCCCCcccCCCeEEEEECCCCCeEEEEE-ECC
Q psy1450 130 FGETPKVVCPPQIVVYDLNQGDKVILRH-KFP 160 (187)
Q Consensus 130 ~~~~~~~~~~pKLv~~Dl~t~d~vi~~~-~lp 160 (187)
+ .|.+||..+ .++++++ .+.
T Consensus 322 -~---------~VsViD~~t-~k~i~~i~~vg 342 (352)
T TIGR02658 322 -K---------TLYIFDAET-GKELSSVNQLG 342 (352)
T ss_pred -C---------cEEEEECcC-CeEEeeeccCC
Confidence 2 388999999 9999998 665
No 41
>cd01210 EPS8 Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. Epidermal growth factor receptor kinase substrate (EPS8) Phosphotyrosine-binding (PTB) domain. EPS8 is a regulator of Rac signaling. It consists of a PTB and an SH3 domain. PTB domains have a PH-like fold and are found in various eukaryotic signaling molecules. They were initially identified based upon their ability to recognize phosphorylated tyrosine residues. In contrast to SH2 domains, which recognize phosphotyrosine and adjacent carboxy-terminal residues, PTB-domain binding specificity is conferred by residues amino-terminal to the phosphotyrosine. More recent studies have found that some types of PTB domains can bind to peptides which are not tyrosine phosphorylated or lack tyrosine residues altogether.
Probab=24.89 E-value=30 Score=26.94 Aligned_cols=47 Identities=13% Similarity=0.171 Sum_probs=34.1
Q ss_pred EEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCCcccCCCCC
Q psy1450 112 EVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDSQIAANSL 169 (187)
Q Consensus 112 ~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~~~~~~~S~ 169 (187)
..|..|++|.-|+=. +...+-|...|..| ..++.+|++.. +..+.++
T Consensus 32 ~le~~G~iW~Q~m~l---------qv~~~~v~LlD~et-k~elE~fpl~~-I~~~~a~ 78 (127)
T cd01210 32 QMDKQGRVWSQKMIL---------RVRYQWVTLLDYET-KEELESYPLSL-IQEPTAF 78 (127)
T ss_pred HHHhcCCccccceEE---------EEcCCeEEEEcCCC-cChhhcCCHhh-cccccee
Confidence 467889999876643 23466799999999 89999998863 5444443
No 42
>PF14398 ATPgrasp_YheCD: YheC/D like ATP-grasp
Probab=24.75 E-value=67 Score=27.35 Aligned_cols=18 Identities=17% Similarity=0.734 Sum_probs=14.8
Q ss_pred EEEEEEcCCCcEEEEeCC
Q psy1450 108 VFRVEVDECGRLWVLDTG 125 (187)
Q Consensus 108 V~~v~iD~~grLWvLDtG 125 (187)
=.++-||.+|++|+|..=
T Consensus 213 GiDl~iD~~g~iWliEvN 230 (262)
T PF14398_consen 213 GIDLGIDKNGKIWLIEVN 230 (262)
T ss_pred EEEEEEcCCCCEEEEEEe
Confidence 356678999999999873
No 43
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=23.37 E-value=3.1e+02 Score=23.35 Aligned_cols=40 Identities=20% Similarity=0.322 Sum_probs=27.1
Q ss_pred EEEEEEEcC-CCcEEEEeCCCCCCCCCCCcccCCCeEEEEECCCCCeEEEEEECCC
Q psy1450 107 SVFRVEVDE-CGRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPD 161 (187)
Q Consensus 107 sV~~v~iD~-~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl~t~d~vi~~~~lp~ 161 (187)
.+-++..++ .++||.+=- .++.|+.+|+ + ++++|+|+|..
T Consensus 23 e~SGLTy~pd~~tLfaV~d-------------~~~~i~els~-~-G~vlr~i~l~g 63 (248)
T PF06977_consen 23 ELSGLTYNPDTGTLFAVQD-------------EPGEIYELSL-D-GKVLRRIPLDG 63 (248)
T ss_dssp -EEEEEEETTTTEEEEEET-------------TTTEEEEEET-T---EEEEEE-SS
T ss_pred CccccEEcCCCCeEEEEEC-------------CCCEEEEEcC-C-CCEEEEEeCCC
Confidence 466778876 578988632 2568999996 5 68999999975
No 44
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=22.44 E-value=5.2e+02 Score=22.45 Aligned_cols=135 Identities=16% Similarity=0.213 Sum_probs=73.0
Q ss_pred eeeEEEeeeeeeCCChhhhh--cccccC--CcccCCC-eEeeeEecCCCCcCCCCCCCCCcEEEEecCCCCCCCceeEEE
Q psy1450 2 TVLHEWSSVDYVWPSSQDRD--NAIRDG--KYNASSV-AILDVDVFDPANYGNASGNKEKRIFVTTPKLRTGIPVTLSTL 76 (187)
Q Consensus 2 ~~~~~W~~~~~~~~~~~~r~--~~~~~g--~y~p~~~-~p~gv~v~~~~~~~~~~~~~~gRvFvt~PR~~~gvp~TL~~v 76 (187)
+++|||+.+|.--+++.... .....| ...|... =...|+.+. +|.++|++-- -.++..|
T Consensus 107 evlfeW~a~DH~~~~~~~~~~~~~~~~g~~~~~~~D~~HiNsV~~~~-----------~G~yLiS~R~-----~~~i~~I 170 (299)
T PF14269_consen 107 EVLFEWSASDHVDPNDSYDSQDPLPGSGGSSSFPWDYFHINSVDKDD-----------DGDYLISSRN-----TSTIYKI 170 (299)
T ss_pred CEEEEEEhhheecccccccccccccCCCcCCCCCCCccEeeeeeecC-----------CccEEEEecc-----cCEEEEE
Confidence 58999999999766665521 111111 1223333 367788886 7888887633 3467777
Q ss_pred ECCCCCC-----CCC---Ccc-CCCCccccCCCCCCCceEEEEEEEcCCCcEEEEeCCCCCCCCCCCcccCCCeEEEEEC
Q psy1450 77 SSKRSKD-----GSP---LLE-PFPNWDAHSEGNCDGLTSVFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIVVYDL 147 (187)
Q Consensus 77 ~~~~~~~-----~~p---~l~-PYP~~~~n~~~~~~~lvsV~~v~iD~~grLWvLDtG~~~~~~~~~~~~~~pKLv~~Dl 147 (187)
.. .++. .++ ... +--++.||... .+.+.. +..++|=|.|.+.-.. . .......+++.+|.
T Consensus 171 ~~-~tG~I~W~lgG~~~~df~~~~~~f~~QHda---r~~~~~----~~~~~IslFDN~~~~~--~-~~~~s~~~v~~ld~ 239 (299)
T PF14269_consen 171 DP-STGKIIWRLGGKRNSDFTLPATNFSWQHDA---RFLNES----NDDGTISLFDNANSDF--N-GTEPSRGLVLELDP 239 (299)
T ss_pred EC-CCCcEEEEeCCCCCCcccccCCcEeeccCC---EEeccC----CCCCEEEEEcCCCCCC--C-CCcCCCceEEEEEC
Confidence 65 3331 111 111 11223343211 111100 4788888999964322 1 23445689999999
Q ss_pred CCCCe--EEEEEE-CCCccc
Q psy1450 148 NQGDK--VILRHK-FPDSQI 164 (187)
Q Consensus 148 ~t~d~--vi~~~~-lp~~~~ 164 (187)
.+ .+ +++++. =|..+.
T Consensus 240 ~~-~~~~~~~~~~~~~~~~~ 258 (299)
T PF14269_consen 240 ET-MTVTLVREYSDHPDGFY 258 (299)
T ss_pred CC-CEEEEEEEeecCCCccc
Confidence 98 74 566666 344433
No 45
>KOG3545|consensus
Probab=21.18 E-value=1.1e+02 Score=26.49 Aligned_cols=33 Identities=30% Similarity=0.525 Sum_probs=23.3
Q ss_pred CCcEEEEeCCCCCCCCCCCcccCCCeE-EEEECCCCCeEEEEEECC
Q psy1450 116 CGRLWVLDTGKLNAFGETPKVVCPPQI-VVYDLNQGDKVILRHKFP 160 (187)
Q Consensus 116 ~grLWvLDtG~~~~~~~~~~~~~~pKL-v~~Dl~t~d~vi~~~~lp 160 (187)
||.|.+|++... ++ . .| .+||+.| ++. .+..||
T Consensus 179 CGvLY~v~S~~~---~~--~-----~i~yaydt~~-~~~-~~~~ip 212 (249)
T KOG3545|consen 179 CGVLYVVHSYNC---TH--T-----QISYAYDTTT-GTQ-ERIDLP 212 (249)
T ss_pred eeeeEEEecccc---CC--c-----eEEEEEEcCC-Cce-eccccc
Confidence 999999999987 32 1 24 6999999 654 334443
No 46
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=21.11 E-value=1.8e+02 Score=22.86 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=20.3
Q ss_pred CCeEEEEECCCCCeEEEEEECCCcccC
Q psy1450 139 PPQIVVYDLNQGDKVILRHKFPDSQIA 165 (187)
Q Consensus 139 ~pKLv~~Dl~t~d~vi~~~~lp~~~~~ 165 (187)
..+|+++|.+| ++++.++.++..+..
T Consensus 45 ~~~l~~~d~~t-G~~~W~~~~~~~~~~ 70 (238)
T PF13360_consen 45 DGNLYALDAKT-GKVLWRFDLPGPISG 70 (238)
T ss_dssp TSEEEEEETTT-SEEEEEEECSSCGGS
T ss_pred CCEEEEEECCC-CCEEEEeeccccccc
Confidence 45789999999 899999998765433
No 47
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=20.25 E-value=1.1e+02 Score=22.25 Aligned_cols=17 Identities=24% Similarity=0.223 Sum_probs=13.4
Q ss_pred eEEEEECCCCCeEEEEEE
Q psy1450 141 QIVVYDLNQGDKVILRHK 158 (187)
Q Consensus 141 KLv~~Dl~t~d~vi~~~~ 158 (187)
-+-++|..| +++||.|+
T Consensus 69 vVkViD~~T-~eVIRqIP 85 (107)
T PF03646_consen 69 VVKVIDKET-GEVIRQIP 85 (107)
T ss_dssp EEEEEETTT--SEEEEE-
T ss_pred EEEEEECCC-CcEEEeCC
Confidence 577899999 99999986
Done!