RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1450
(187 letters)
>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein,
serotonin, salivary gland, binding, ligand binging
protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis}
PDB: 3q6p_A* 3q6t_A*
Length = 381
Score = 132 bits (333), Expect = 1e-37
Identities = 46/195 (23%), Positives = 76/195 (38%), Gaps = 33/195 (16%)
Query: 2 TVLHEWSSVDYVWPSSQDRDNAIRDGKYNASSVAILDVDVFDPANYGNASGNKEKRIFVT 61
T ++W + Y N + G YN ++ G ++F+
Sbjct: 3 TQGYKWKQLLY---------NNVTPGSYNPDNMISTAFAY---DAEGE-------KLFLA 43
Query: 62 TPKLRTGIPVTLSTLSSKRSK----DGSPLLEPFPNWDAHSEGNCDGLTSVFRVEVDECG 117
P+ +P TL+ + +K S SPLL F LTS+++ +D+C
Sbjct: 44 VPRKLPRVPYTLAEVDTKNSLGVKGKHSPLLNKFSGHK-----TGKELTSIYQPVIDDCR 98
Query: 118 RLWVLDTGKLNAFGETPKV--VCPPQIVVYDLNQGD-KVILRHKFPDSQIAANSLPLTIV 174
RLWV+D G + K P IV YDL Q + ++R+ FP + +
Sbjct: 99 RLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFA 158
Query: 175 IDTRNP--QCTRQYA 187
+D NP C+ +
Sbjct: 159 VDVANPKGDCSETFV 173
>2qe8_A Uncharacterized protein; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc
29413}
Length = 343
Score = 84.5 bits (208), Expect = 5e-20
Identities = 21/123 (17%), Positives = 47/123 (38%), Gaps = 20/123 (16%)
Query: 57 RIFVTTPKLRTGIPVTLSTLSSKRSKDGSPLLEPFPNWDAHSEGNCDGLTSVFRVEVDEC 116
R+F++ + + ++ L+ L PFP ++ +V ++ D
Sbjct: 29 RLFLSLHQFY-QPEMQVAELTQ-------DGLIPFPPQSGNA---IITFDTVLGIKSDGN 77
Query: 117 GRLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKFPDSQIAANSLPLTIVID 176
G +W+LD G + P++V +D +++ P +NS + +D
Sbjct: 78 GIVWMLDNGNQS--------KSVPKLVAWDTL-NNQLSRVIYLPPPITLSNSFVNDLAVD 128
Query: 177 TRN 179
+
Sbjct: 129 LIH 131
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.3 bits (78), Expect = 0.020
Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 85/219 (38%)
Query: 5 HEWSSVDYVWPS-SQDRDNAIRDGKYNASS-VAILDVD---VFDPANYGNASGNKEKRIF 59
+E + PS +D ++ + + S ++I ++ V D N N+ K++
Sbjct: 311 YEAYPNTSLPPSILED---SLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVE 367
Query: 60 VT---TPKLR--TGIPVTLSTLS-------------------SKRSKDG----------- 84
++ K +G P +L L+ S+R
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPF 427
Query: 85 -SPLLEPFPNWDAHSEGNCDGLTSVFRVEVDECGRLWVLDTGKLNAFGETPKVVCPPQIV 143
S LL P + + D + + QI
Sbjct: 428 HSHLLVP----------------ASDLINKDLVKNNVSFNAKDI-------------QIP 458
Query: 144 VYDLNQGDKVILRHKFPDSQIAANSLPLTIV--IDTRNP 180
VYD G D ++ + S+ IV I R P
Sbjct: 459 VYDTFDGS---------DLRVLSGSISERIVDCI-IRLP 487
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 0.82
Identities = 7/24 (29%), Positives = 11/24 (45%), Gaps = 5/24 (20%)
Query: 135 KVVCP-----PQIVVYDLNQGDKV 153
+ CP P +V ++GD V
Sbjct: 21 VLTCPECKVYPPKIVERFSEGDVV 44
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD
repeat, scaffold protein, ATP- binding, endosome, golgi
apparatus; 1.80A {Saccharomyces cerevisiae}
Length = 437
Score = 27.8 bits (62), Expect = 2.4
Identities = 7/71 (9%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 118 RLWVLDTGKLNAFGETPKVVCPPQIVVYDLNQGDKVILRHKF-PDSQ--IAANSLPLTIV 174
+ ++ + + + C +I + + + + + F + + + A + ++
Sbjct: 136 IVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVI 195
Query: 175 I-DTRNPQCTR 184
I D R + +
Sbjct: 196 IFDIRTLERLQ 206
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 26.8 bits (60), Expect = 3.8
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 116 CGRLWVLDTGKLNAFGETPKVVCPPQIV-VYDL 147
R W+L GK+ A G +V+ PP + Y +
Sbjct: 200 AHRAWLLKGGKMLASGRREEVLTPPNLAQAYGM 232
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE),
nitrogen-calcium coordination, BET propeller; HET: ME2
MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB:
1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A
2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A
2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Length = 314
Score = 26.6 bits (59), Expect = 5.2
Identities = 8/33 (24%), Positives = 12/33 (36%), Gaps = 6/33 (18%)
Query: 89 EPFPNWDAHSEGNCDGLTSVFRVEVDECGRLWV 121
+ + + EG DG+ DE L V
Sbjct: 215 KVWGHIPGTHEGGADGMD------FDEDNNLLV 241
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.134 0.414
Gapped
Lambda K H
0.267 0.0520 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,896,967
Number of extensions: 163236
Number of successful extensions: 330
Number of sequences better than 10.0: 1
Number of HSP's gapped: 321
Number of HSP's successfully gapped: 9
Length of query: 187
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 99
Effective length of database: 4,244,745
Effective search space: 420229755
Effective search space used: 420229755
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.1 bits)