RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy1450
         (187 letters)



>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
           uptake, BtuD {Escherichia coli [TaxId: 562]}
          Length = 231

 Score = 25.3 bits (55), Expect = 4.9
 Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 1/33 (3%)

Query: 116 CGRLWVLDTGKLNAFGETPKVVCPPQIV-VYDL 147
             R W+L  GK+ A G   +V+ PP +   Y +
Sbjct: 199 AHRAWLLKGGKMLASGRREEVLTPPNLAQAYGM 231


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.317    0.134    0.414 

Gapped
Lambda     K      H
   0.267   0.0363    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 717,504
Number of extensions: 31522
Number of successful extensions: 65
Number of sequences better than 10.0: 1
Number of HSP's gapped: 65
Number of HSP's successfully gapped: 4
Length of query: 187
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 107
Effective length of database: 1,309,196
Effective search space: 140083972
Effective search space used: 140083972
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (24.0 bits)