Query psy14500
Match_columns 938
No_of_seqs 575 out of 5521
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 21:25:44 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14500.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14500hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 3.2E-96 7E-101 841.4 60.5 625 7-715 146-775 (786)
2 PRK10865 protein disaggregatio 100.0 2E-84 4.3E-89 786.8 67.3 692 9-714 156-848 (857)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 1.4E-83 3E-88 776.0 68.2 675 10-712 166-848 (852)
4 TIGR03346 chaperone_ClpB ATP-d 100.0 2.5E-82 5.4E-87 773.5 72.0 695 8-714 150-845 (852)
5 CHL00095 clpC Clp protease ATP 100.0 5.8E-79 1.3E-83 742.5 66.0 631 10-714 158-801 (821)
6 PRK11034 clpA ATP-dependent Cl 100.0 1.9E-75 4.2E-80 690.3 52.4 568 11-714 166-735 (758)
7 TIGR02639 ClpA ATP-dependent C 100.0 2.9E-75 6.2E-80 702.8 55.0 567 10-712 161-729 (731)
8 KOG1051|consensus 100.0 3.7E-68 8.1E-73 617.5 39.1 673 8-714 163-852 (898)
9 TIGR00668 apaH bis(5'-nucleosy 100.0 1.1E-55 2.5E-60 455.8 23.4 263 669-937 3-268 (279)
10 cd07422 MPP_ApaH Escherichia c 100.0 4.2E-51 9.2E-56 424.6 22.5 253 670-928 2-257 (257)
11 PRK00166 apaH diadenosine tetr 100.0 8.9E-51 1.9E-55 427.2 24.0 263 669-937 3-268 (275)
12 KOG0733|consensus 100.0 1.7E-43 3.7E-48 382.8 30.2 453 29-637 188-692 (802)
13 KOG0730|consensus 100.0 3.9E-38 8.5E-43 347.7 28.1 406 49-678 215-644 (693)
14 TIGR01243 CDC48 AAA family ATP 100.0 5E-32 1.1E-36 328.9 36.0 418 27-637 174-635 (733)
15 PRK13625 bis(5'-nucleosyl)-tet 100.0 5.3E-32 1.1E-36 284.2 17.2 207 670-937 4-232 (245)
16 KOG0736|consensus 100.0 6.5E-30 1.4E-34 284.7 29.7 437 32-677 402-886 (953)
17 cd07413 MPP_PA3087 Pseudomonas 100.0 2.6E-31 5.6E-36 274.3 14.6 194 670-931 2-220 (222)
18 KOG0735|consensus 100.0 3E-29 6.4E-34 276.6 29.6 387 50-637 429-848 (952)
19 COG0466 Lon ATP-dependent Lon 100.0 2.8E-28 6.1E-33 272.2 31.5 410 198-685 127-556 (782)
20 cd07423 MPP_PrpE Bacillus subt 100.0 3.2E-29 7E-34 262.2 14.4 208 670-937 4-229 (234)
21 TIGR00382 clpX endopeptidase C 100.0 1.7E-27 3.7E-32 262.8 23.9 260 418-695 68-390 (413)
22 PRK11439 pphA serine/threonine 100.0 2E-28 4.4E-33 252.8 13.8 200 658-928 8-218 (218)
23 TIGR00763 lon ATP-dependent pr 99.9 3.4E-25 7.3E-30 269.4 36.0 357 262-689 185-554 (775)
24 PRK10787 DNA-binding ATP-depen 99.9 1.7E-25 3.7E-30 268.3 32.8 357 262-687 187-553 (784)
25 PRK05342 clpX ATP-dependent pr 99.9 1.9E-26 4E-31 256.8 22.5 259 418-693 62-382 (412)
26 cd07421 MPP_Rhilphs Rhilph pho 99.9 3.4E-27 7.3E-32 243.3 13.0 204 669-934 4-298 (304)
27 KOG0741|consensus 99.9 1.8E-25 3.9E-30 239.2 26.3 169 49-234 253-440 (744)
28 KOG2004|consensus 99.9 3.1E-24 6.8E-29 237.8 29.6 354 266-685 279-644 (906)
29 PHA02239 putative protein phos 99.9 5.8E-26 1.2E-30 234.7 13.4 125 670-794 4-172 (235)
30 COG2256 MGS1 ATPase related to 99.9 7.4E-25 1.6E-29 230.4 17.9 201 19-255 12-221 (436)
31 PRK09968 serine/threonine-spec 99.9 2.3E-25 5E-30 229.4 12.0 196 664-927 12-217 (218)
32 COG1222 RPT1 ATP-dependent 26S 99.9 3.7E-24 7.9E-29 221.3 19.1 201 26-254 146-372 (406)
33 COG1223 Predicted ATPase (AAA+ 99.9 1.2E-23 2.6E-28 206.9 19.2 189 22-233 112-318 (368)
34 COG1219 ClpX ATP-dependent pro 99.9 2E-23 4.4E-28 211.4 17.0 276 417-709 51-391 (408)
35 COG2204 AtoC Response regulato 99.9 2E-23 4.4E-28 230.2 17.6 269 382-686 99-371 (464)
36 KOG0989|consensus 99.9 1.3E-23 2.9E-28 212.9 14.1 207 18-252 23-236 (346)
37 cd07424 MPP_PrpA_PrpB PrpA and 99.9 6.6E-24 1.4E-28 218.1 11.0 191 670-927 4-206 (207)
38 PF07724 AAA_2: AAA domain (Cd 99.9 1.2E-23 2.5E-28 207.2 12.2 151 455-617 1-170 (171)
39 COG0464 SpoVK ATPases of the A 99.9 2.1E-21 4.6E-26 226.9 31.4 383 44-639 10-425 (494)
40 COG3829 RocR Transcriptional r 99.9 4.7E-23 1E-27 225.6 15.8 244 426-705 244-491 (560)
41 COG3604 FhlA Transcriptional r 99.9 4.2E-23 9.1E-28 222.4 15.2 227 427-686 223-453 (550)
42 PRK05201 hslU ATP-dependent pr 99.9 1.7E-22 3.6E-27 218.8 19.2 250 418-695 6-412 (443)
43 PF05496 RuvB_N: Holliday junc 99.9 7.6E-23 1.6E-27 202.7 13.9 189 18-250 11-225 (233)
44 cd00144 MPP_PPP_family phospho 99.9 2.8E-23 6E-28 217.7 9.6 209 670-927 1-225 (225)
45 KOG0738|consensus 99.9 4.2E-22 9.1E-27 207.0 17.8 197 28-252 209-430 (491)
46 TIGR00390 hslU ATP-dependent p 99.9 8.1E-22 1.8E-26 213.3 19.5 250 418-695 3-410 (441)
47 KOG0730|consensus 99.9 4.7E-22 1E-26 220.8 17.6 200 28-255 431-653 (693)
48 PRK14956 DNA polymerase III su 99.9 1.6E-21 3.5E-26 216.8 18.1 204 19-253 6-229 (484)
49 KOG0734|consensus 99.9 2.6E-21 5.7E-26 207.8 15.0 203 28-258 301-525 (752)
50 KOG2028|consensus 99.9 3.6E-21 7.9E-26 197.8 15.4 207 18-257 125-347 (554)
51 PRK07003 DNA polymerase III su 99.9 7.9E-21 1.7E-25 217.8 17.5 203 20-253 5-227 (830)
52 KOG0745|consensus 99.8 2.8E-20 6.1E-25 195.8 19.3 219 458-694 227-513 (564)
53 KOG0733|consensus 99.8 1.1E-20 2.4E-25 206.3 15.9 175 50-251 543-730 (802)
54 KOG0739|consensus 99.8 1E-20 2.3E-25 189.6 14.1 183 29-234 131-335 (439)
55 PRK12323 DNA polymerase III su 99.8 1.2E-20 2.6E-25 213.9 16.1 203 19-252 4-231 (700)
56 TIGR02974 phageshock_pspF psp 99.8 2.3E-20 5.1E-25 204.1 16.9 226 429-686 1-230 (329)
57 PRK14960 DNA polymerase III su 99.8 7E-20 1.5E-24 208.4 20.8 203 20-253 4-226 (702)
58 KOG0736|consensus 99.8 5.3E-20 1.2E-24 206.1 18.5 198 29-253 670-894 (953)
59 CHL00195 ycf46 Ycf46; Provisio 99.8 9.8E-20 2.1E-24 206.8 20.8 202 27-254 224-444 (489)
60 PLN03025 replication factor C 99.8 5.7E-20 1.2E-24 202.0 16.4 194 20-249 2-203 (319)
61 PRK14949 DNA polymerase III su 99.8 8.9E-20 1.9E-24 213.4 17.2 203 19-252 4-226 (944)
62 PRK13342 recombination factor 99.8 1.4E-19 3E-24 205.8 18.1 196 20-253 1-203 (413)
63 PRK14964 DNA polymerase III su 99.8 2.2E-19 4.8E-24 202.6 18.4 204 20-254 2-225 (491)
64 PRK07994 DNA polymerase III su 99.8 2E-19 4.4E-24 208.6 18.5 204 19-253 4-227 (647)
65 PRK14958 DNA polymerase III su 99.8 1.9E-19 4.1E-24 206.9 17.3 203 20-253 5-227 (509)
66 PRK15424 propionate catabolism 99.8 2.6E-19 5.6E-24 205.4 18.0 225 427-686 219-462 (538)
67 CHL00195 ycf46 Ycf46; Provisio 99.8 1.1E-17 2.5E-22 190.1 31.0 160 459-678 261-436 (489)
68 TIGR01817 nifA Nif-specific re 99.8 2E-19 4.3E-24 211.8 17.2 227 426-686 195-425 (534)
69 PRK14962 DNA polymerase III su 99.8 3.2E-19 7E-24 202.7 18.3 202 20-252 3-224 (472)
70 PRK11608 pspF phage shock prot 99.8 3.7E-19 8E-24 195.1 18.1 228 427-686 6-237 (326)
71 TIGR02329 propionate_PrpR prop 99.8 3E-19 6.4E-24 205.4 17.8 225 427-686 212-447 (526)
72 PF00158 Sigma54_activat: Sigm 99.8 2.9E-19 6.3E-24 175.4 14.1 163 429-617 1-164 (168)
73 COG3283 TyrR Transcriptional r 99.8 5E-19 1.1E-23 181.9 16.1 225 426-687 203-430 (511)
74 COG1220 HslU ATP-dependent pro 99.8 4.7E-19 1E-23 181.1 15.8 248 419-694 7-412 (444)
75 COG2256 MGS1 ATPase related to 99.8 2.6E-19 5.6E-24 188.9 14.3 189 427-688 24-219 (436)
76 PRK14957 DNA polymerase III su 99.8 6.2E-19 1.3E-23 201.9 18.7 204 19-253 4-227 (546)
77 PLN00020 ribulose bisphosphate 99.8 8.2E-19 1.8E-23 185.4 18.0 170 50-252 146-341 (413)
78 PF05496 RuvB_N: Holliday junc 99.8 1.1E-18 2.3E-23 173.3 17.7 181 426-665 23-211 (233)
79 cd07425 MPP_Shelphs Shewanella 99.8 7.3E-20 1.6E-24 187.0 9.8 122 670-791 1-141 (208)
80 CHL00181 cbbX CbbX; Provisiona 99.8 7.6E-19 1.6E-23 188.2 18.0 216 416-687 12-252 (287)
81 KOG0728|consensus 99.8 2.6E-19 5.7E-24 175.2 12.9 180 21-218 137-342 (404)
82 PRK03992 proteasome-activating 99.8 1.7E-18 3.7E-23 194.4 21.5 201 27-255 127-353 (389)
83 COG2255 RuvB Holliday junction 99.8 5E-19 1.1E-23 177.9 15.2 193 20-256 15-233 (332)
84 COG1221 PspF Transcriptional r 99.8 2.9E-19 6.3E-24 194.0 14.5 230 423-689 74-309 (403)
85 PRK05022 anaerobic nitric oxid 99.8 7.1E-19 1.5E-23 205.0 18.9 227 427-686 187-417 (509)
86 KOG0991|consensus 99.8 5E-20 1.1E-24 178.7 7.6 208 15-254 11-222 (333)
87 KOG0737|consensus 99.8 3E-19 6.4E-24 186.6 13.8 182 29-234 90-296 (386)
88 PRK14952 DNA polymerase III su 99.8 1.2E-18 2.7E-23 201.3 20.2 203 20-253 2-226 (584)
89 PRK10820 DNA-binding transcrip 99.8 7.2E-19 1.6E-23 204.7 18.4 229 426-687 203-435 (520)
90 PTZ00454 26S protease regulato 99.8 2.4E-18 5.1E-23 191.8 21.6 202 26-255 140-367 (398)
91 PRK14961 DNA polymerase III su 99.8 1E-18 2.2E-23 195.0 18.6 204 19-253 4-227 (363)
92 PRK13341 recombination factor 99.8 7.2E-19 1.6E-23 208.5 17.7 198 19-252 16-223 (725)
93 TIGR02881 spore_V_K stage V sp 99.8 2.6E-18 5.5E-23 183.4 19.7 213 29-254 4-238 (261)
94 PRK14951 DNA polymerase III su 99.8 1E-18 2.2E-23 202.6 17.8 203 20-253 5-232 (618)
95 TIGR02880 cbbX_cfxQ probable R 99.8 1.8E-18 3.9E-23 185.6 18.5 216 415-686 10-250 (284)
96 KOG0731|consensus 99.8 1.8E-18 4E-23 198.8 19.3 201 28-255 308-534 (774)
97 PRK06645 DNA polymerase III su 99.8 1.8E-18 3.9E-23 197.1 18.3 205 19-254 9-237 (507)
98 PRK08451 DNA polymerase III su 99.8 3.6E-18 7.7E-23 194.5 20.4 204 20-254 3-226 (535)
99 PRK07764 DNA polymerase III su 99.8 5.1E-18 1.1E-22 203.6 22.7 203 20-253 4-228 (824)
100 PRK08691 DNA polymerase III su 99.8 1.4E-18 3E-23 200.0 16.8 204 19-253 4-227 (709)
101 TIGR01241 FtsH_fam ATP-depende 99.8 2.9E-18 6.3E-23 199.6 19.5 200 27-254 51-275 (495)
102 PTZ00361 26 proteosome regulat 99.8 2.4E-18 5.3E-23 192.5 18.0 206 22-255 174-405 (438)
103 PRK14959 DNA polymerase III su 99.8 2.4E-18 5.1E-23 197.7 18.0 205 19-251 4-225 (624)
104 COG2812 DnaX DNA polymerase II 99.8 9.1E-19 2E-23 196.4 14.0 204 20-254 5-228 (515)
105 KOG0740|consensus 99.8 3.6E-18 7.8E-23 185.8 17.6 203 21-251 143-368 (428)
106 PRK14969 DNA polymerase III su 99.8 1.1E-17 2.4E-22 193.7 21.9 203 20-253 5-227 (527)
107 KOG0727|consensus 99.8 1.3E-18 2.8E-23 170.6 11.8 178 49-254 186-376 (408)
108 TIGR01243 CDC48 AAA family ATP 99.8 5.3E-18 1.1E-22 206.6 20.1 197 28-252 450-670 (733)
109 TIGR03689 pup_AAA proteasome A 99.8 2.7E-18 5.8E-23 194.5 15.7 181 22-209 173-380 (512)
110 PRK05896 DNA polymerase III su 99.8 5.4E-18 1.2E-22 193.7 17.9 204 19-253 4-227 (605)
111 KOG0726|consensus 99.8 6.5E-19 1.4E-23 176.2 8.7 179 22-218 176-380 (440)
112 KOG0735|consensus 99.8 6.7E-18 1.5E-22 187.5 17.4 183 29-234 665-870 (952)
113 PRK05563 DNA polymerase III su 99.8 1E-17 2.2E-22 195.4 19.5 203 20-253 5-227 (559)
114 PRK11388 DNA-binding transcrip 99.8 5.6E-18 1.2E-22 204.0 18.0 225 426-686 324-551 (638)
115 PRK07133 DNA polymerase III su 99.8 9.3E-18 2E-22 195.5 19.0 203 19-252 6-225 (725)
116 PRK04195 replication factor C 99.8 3.6E-18 7.8E-23 198.0 15.6 194 19-249 2-205 (482)
117 PRK14963 DNA polymerase III su 99.8 1E-17 2.3E-22 192.0 18.9 202 20-252 3-223 (504)
118 COG0464 SpoVK ATPases of the A 99.8 1.6E-17 3.4E-22 194.4 20.8 203 28-256 239-464 (494)
119 PRK15429 formate hydrogenlyase 99.8 1.1E-17 2.4E-22 202.6 19.7 226 427-686 376-606 (686)
120 COG1222 RPT1 ATP-dependent 26S 99.8 5.8E-18 1.3E-22 175.7 14.4 164 427-639 151-337 (406)
121 PRK00080 ruvB Holliday junctio 99.8 1.8E-17 4E-22 183.1 18.8 190 21-254 15-230 (328)
122 CHL00181 cbbX CbbX; Provisiona 99.8 3.7E-17 7.9E-22 175.2 20.4 210 32-254 24-254 (287)
123 PRK09111 DNA polymerase III su 99.8 1.6E-17 3.5E-22 193.3 18.8 204 19-253 12-240 (598)
124 PHA02544 44 clamp loader, smal 99.8 1.4E-17 3E-22 184.0 17.2 199 18-249 8-212 (316)
125 PRK14965 DNA polymerase III su 99.8 1E-17 2.2E-22 196.4 16.9 204 20-254 5-228 (576)
126 CHL00176 ftsH cell division pr 99.8 3.2E-17 6.9E-22 192.3 20.9 199 28-254 180-403 (638)
127 COG1223 Predicted ATPase (AAA+ 99.7 5.7E-18 1.2E-22 167.1 11.9 166 425-639 119-299 (368)
128 KOG0729|consensus 99.7 2.3E-17 5E-22 163.0 14.5 163 29-209 175-363 (435)
129 PRK06647 DNA polymerase III su 99.7 4.6E-17 1E-21 188.9 19.2 204 19-253 4-227 (563)
130 KOG0652|consensus 99.7 1.4E-17 3E-22 164.1 12.4 184 28-234 168-377 (424)
131 KOG0989|consensus 99.7 2.5E-17 5.3E-22 167.6 14.6 190 426-686 35-235 (346)
132 PRK10923 glnG nitrogen regulat 99.7 3.7E-17 8E-22 190.8 17.4 226 428-686 139-368 (469)
133 TIGR02915 PEP_resp_reg putativ 99.7 8.7E-17 1.9E-21 186.5 19.9 267 384-686 98-369 (445)
134 PRK14955 DNA polymerase III su 99.7 3.7E-17 7.9E-22 184.6 16.2 204 19-253 4-235 (397)
135 PRK06305 DNA polymerase III su 99.7 8.1E-17 1.8E-21 183.3 19.0 203 19-252 5-228 (451)
136 PRK14954 DNA polymerase III su 99.7 7.5E-17 1.6E-21 187.9 18.6 204 20-254 5-236 (620)
137 KOG0732|consensus 99.7 3.8E-17 8.2E-22 192.8 15.9 189 29-234 263-474 (1080)
138 PRK14953 DNA polymerase III su 99.7 7.6E-17 1.7E-21 184.4 18.0 203 19-252 4-226 (486)
139 TIGR00635 ruvB Holliday juncti 99.7 1.2E-16 2.7E-21 175.5 19.0 183 28-254 1-209 (305)
140 TIGR01242 26Sp45 26S proteasom 99.7 1.4E-16 3E-21 178.6 19.6 201 26-254 117-343 (364)
141 TIGR02880 cbbX_cfxQ probable R 99.7 2.4E-16 5.1E-21 169.3 20.5 186 32-230 23-227 (284)
142 KOG2035|consensus 99.7 2.9E-16 6.3E-21 156.9 18.7 253 21-303 3-280 (351)
143 PRK12402 replication factor C 99.7 1.1E-16 2.5E-21 178.7 17.7 205 19-251 3-231 (337)
144 TIGR02902 spore_lonB ATP-depen 99.7 7.4E-17 1.6E-21 187.6 16.4 210 17-254 51-312 (531)
145 PRK14956 DNA polymerase III su 99.7 1.1E-16 2.3E-21 178.6 16.7 201 426-686 17-227 (484)
146 TIGR02881 spore_V_K stage V sp 99.7 2.6E-16 5.7E-21 168.0 18.9 182 429-663 8-208 (261)
147 CHL00206 ycf2 Ycf2; Provisiona 99.7 2.1E-16 4.5E-21 194.0 19.6 181 49-257 1627-1860(2281)
148 PRK11361 acetoacetate metaboli 99.7 3E-16 6.5E-21 182.8 20.3 226 428-686 144-373 (457)
149 COG0465 HflB ATP-dependent Zn 99.7 9.2E-17 2E-21 182.2 15.3 200 28-255 147-371 (596)
150 COG5271 MDN1 AAA ATPase contai 99.7 1.2E-15 2.5E-20 179.5 24.4 152 459-638 1545-1704(4600)
151 TIGR02397 dnaX_nterm DNA polym 99.7 3.1E-16 6.8E-21 176.4 19.5 204 19-253 2-225 (355)
152 PRK14948 DNA polymerase III su 99.7 2.7E-16 5.9E-21 184.6 18.8 202 19-251 4-227 (620)
153 PRK14971 DNA polymerase III su 99.7 2.8E-16 6.1E-21 184.5 18.9 204 19-253 5-229 (614)
154 PRK14970 DNA polymerase III su 99.7 5.3E-16 1.1E-20 174.7 20.1 204 19-253 5-216 (367)
155 PRK00440 rfc replication facto 99.7 2.6E-16 5.7E-21 174.3 17.1 198 19-252 5-209 (319)
156 PRK04132 replication factor C 99.7 2.7E-14 5.9E-19 170.1 32.8 162 459-686 566-736 (846)
157 PRK07003 DNA polymerase III su 99.7 5.2E-16 1.1E-20 178.6 17.2 201 426-686 15-225 (830)
158 COG0466 Lon ATP-dependent Lon 99.7 4.8E-16 1E-20 175.0 16.3 202 32-254 324-561 (782)
159 KOG2170|consensus 99.7 5.7E-16 1.2E-20 157.2 15.2 240 418-678 73-334 (344)
160 TIGR01818 ntrC nitrogen regula 99.7 5.5E-16 1.2E-20 180.8 17.5 225 429-686 136-364 (463)
161 PRK15115 response regulator Gl 99.7 6.3E-16 1.4E-20 179.2 17.2 226 428-686 135-364 (444)
162 COG2255 RuvB Holliday junction 99.7 1.4E-15 3E-20 153.3 16.9 181 426-665 25-213 (332)
163 PRK12323 DNA polymerase III su 99.7 2.6E-16 5.6E-21 179.0 13.2 185 426-664 15-214 (700)
164 PRK14949 DNA polymerase III su 99.7 4.4E-16 9.6E-21 182.7 14.9 186 426-664 15-209 (944)
165 PRK14950 DNA polymerase III su 99.7 8.5E-16 1.8E-20 181.4 17.3 202 20-252 5-227 (585)
166 COG3284 AcoR Transcriptional a 99.7 2.1E-16 4.5E-21 177.1 11.2 219 430-686 316-537 (606)
167 PRK10733 hflB ATP-dependent me 99.7 2.7E-15 5.9E-20 178.6 19.9 202 26-255 147-373 (644)
168 TIGR00763 lon ATP-dependent pr 99.6 1.3E-15 2.9E-20 185.7 16.3 198 32-250 321-554 (775)
169 KOG2004|consensus 99.6 1.5E-15 3.3E-20 169.5 14.8 202 31-253 411-648 (906)
170 PRK14960 DNA polymerase III su 99.6 2.3E-15 5E-20 171.9 16.7 200 426-686 14-224 (702)
171 PRK14964 DNA polymerase III su 99.6 1.4E-15 3.1E-20 171.9 14.3 202 426-686 12-222 (491)
172 KOG0734|consensus 99.6 1.5E-15 3.3E-20 163.9 13.6 163 425-639 302-486 (752)
173 KOG0651|consensus 99.6 6.9E-16 1.5E-20 156.7 10.3 165 27-209 128-318 (388)
174 PRK14958 DNA polymerase III su 99.6 2.5E-15 5.5E-20 172.9 16.4 185 426-665 15-210 (509)
175 PRK07994 DNA polymerase III su 99.6 4.6E-15 9.9E-20 172.6 17.8 184 426-664 15-209 (647)
176 TIGR02902 spore_lonB ATP-depen 99.6 3.6E-15 7.9E-20 173.6 16.9 206 427-678 65-304 (531)
177 PRK14952 DNA polymerase III su 99.6 5E-15 1.1E-19 171.6 17.6 202 426-686 12-224 (584)
178 PLN03025 replication factor C 99.6 6.2E-15 1.3E-19 162.2 16.8 182 427-683 13-202 (319)
179 PRK14962 DNA polymerase III su 99.6 5.7E-15 1.2E-19 168.2 16.4 200 426-686 13-223 (472)
180 PRK14957 DNA polymerase III su 99.6 7.2E-15 1.6E-19 168.7 17.2 201 426-686 15-225 (546)
181 PRK07764 DNA polymerase III su 99.6 7.3E-15 1.6E-19 176.6 17.7 200 426-686 14-226 (824)
182 PRK14951 DNA polymerase III su 99.6 5.2E-15 1.1E-19 171.9 15.2 201 426-686 15-230 (618)
183 KOG0990|consensus 99.6 2.2E-14 4.7E-19 147.2 17.5 210 14-255 24-241 (360)
184 KOG2028|consensus 99.6 3.8E-15 8.3E-20 153.8 12.0 190 428-686 139-341 (554)
185 PF00004 AAA: ATPase family as 99.6 6.1E-15 1.3E-19 140.5 12.8 121 55-192 1-131 (132)
186 cd07420 MPP_RdgC Drosophila me 99.6 6.5E-15 1.4E-19 157.8 13.5 159 623-797 19-184 (321)
187 PRK14961 DNA polymerase III su 99.6 9.8E-15 2.1E-19 163.1 15.4 201 426-686 15-225 (363)
188 PRK06645 DNA polymerase III su 99.6 1.2E-14 2.5E-19 166.1 15.4 200 426-686 20-234 (507)
189 PRK10365 transcriptional regul 99.6 1.7E-14 3.8E-19 167.3 17.1 225 429-686 141-369 (441)
190 PRK07940 DNA polymerase III su 99.6 1.5E-14 3.3E-19 160.9 15.8 185 29-248 3-215 (394)
191 PRK13531 regulatory ATPase Rav 99.6 3.3E-14 7.2E-19 157.9 18.2 179 416-635 9-192 (498)
192 PRK08691 DNA polymerase III su 99.6 6.4E-15 1.4E-19 170.1 13.1 200 426-686 15-225 (709)
193 PRK05563 DNA polymerase III su 99.6 2.3E-14 5E-19 167.5 17.9 201 426-686 15-225 (559)
194 PRK08451 DNA polymerase III su 99.6 1.6E-14 3.4E-19 164.9 15.6 201 427-686 14-223 (535)
195 PRK07133 DNA polymerase III su 99.6 1.5E-14 3.2E-19 169.0 15.5 186 426-665 17-209 (725)
196 PRK14959 DNA polymerase III su 99.6 2.4E-14 5.2E-19 165.0 17.0 200 426-686 15-225 (624)
197 PRK14965 DNA polymerase III su 99.6 9.8E-15 2.1E-19 171.4 14.1 202 426-686 15-225 (576)
198 PRK08084 DNA replication initi 99.6 3.6E-14 7.7E-19 148.6 16.7 189 29-250 20-213 (235)
199 COG2812 DnaX DNA polymerase II 99.6 7.1E-15 1.5E-19 165.3 12.0 197 426-678 15-220 (515)
200 TIGR02903 spore_lon_C ATP-depe 99.6 4.9E-14 1.1E-18 166.5 19.6 213 17-252 140-400 (615)
201 KOG0742|consensus 99.6 1.7E-14 3.7E-19 151.0 13.5 185 13-215 332-536 (630)
202 PRK14963 DNA polymerase III su 99.6 2.3E-14 5E-19 164.6 15.6 200 427-686 14-222 (504)
203 PRK05896 DNA polymerase III su 99.6 4.3E-14 9.3E-19 162.0 16.7 200 426-686 15-225 (605)
204 PRK14969 DNA polymerase III su 99.6 1.6E-14 3.4E-19 167.6 13.4 201 426-686 15-225 (527)
205 smart00156 PP2Ac Protein phosp 99.6 3.4E-14 7.3E-19 150.7 14.5 118 668-791 29-151 (271)
206 PRK00080 ruvB Holliday junctio 99.6 2.1E-13 4.5E-18 150.8 21.3 180 427-665 25-212 (328)
207 TIGR00602 rad24 checkpoint pro 99.6 3.6E-14 7.8E-19 165.2 15.6 223 19-252 72-329 (637)
208 PRK09111 DNA polymerase III su 99.6 2.8E-14 6E-19 166.5 14.7 187 426-665 23-223 (598)
209 PTZ00112 origin recognition co 99.6 6.7E-14 1.5E-18 161.4 17.4 213 21-253 748-988 (1164)
210 KOG0738|consensus 99.6 2.4E-14 5.3E-19 149.7 12.5 167 427-638 212-396 (491)
211 PTZ00244 serine/threonine-prot 99.5 4.3E-14 9.3E-19 150.5 13.6 148 623-792 24-176 (294)
212 TIGR02928 orc1/cdc6 family rep 99.5 2.1E-13 4.7E-18 153.9 20.1 221 19-255 6-255 (365)
213 PRK13341 recombination factor 99.5 6.5E-14 1.4E-18 166.6 16.4 191 427-686 28-222 (725)
214 PRK13342 recombination factor 99.5 1.1E-13 2.5E-18 157.4 17.7 183 427-686 12-201 (413)
215 PRK06305 DNA polymerase III su 99.5 5.7E-14 1.2E-18 160.1 15.2 199 426-685 16-226 (451)
216 PRK07940 DNA polymerase III su 99.5 4E-14 8.6E-19 157.6 13.2 171 426-634 4-186 (394)
217 TIGR00635 ruvB Holliday juncti 99.5 2.1E-13 4.6E-18 149.8 19.0 179 427-664 4-190 (305)
218 PRK14953 DNA polymerase III su 99.5 5.4E-14 1.2E-18 161.1 14.7 186 426-664 15-209 (486)
219 KOG0728|consensus 99.5 6.1E-14 1.3E-18 137.9 12.5 162 428-638 148-332 (404)
220 PRK06893 DNA replication initi 99.5 1.1E-13 2.5E-18 144.3 15.5 191 26-250 11-207 (229)
221 PF01078 Mg_chelatase: Magnesi 99.5 1.8E-14 3.9E-19 142.9 8.9 174 427-628 3-206 (206)
222 KOG0727|consensus 99.5 5.8E-14 1.3E-18 138.2 12.2 156 428-632 156-334 (408)
223 PRK09112 DNA polymerase III su 99.5 3.1E-13 6.7E-18 148.6 18.6 201 25-250 17-244 (351)
224 PRK10787 DNA-binding ATP-depen 99.5 1.2E-13 2.5E-18 166.7 16.7 200 29-250 319-555 (784)
225 PRK06647 DNA polymerase III su 99.5 1.7E-13 3.8E-18 159.3 17.5 184 426-664 15-209 (563)
226 TIGR02640 gas_vesic_GvpN gas v 99.5 4E-13 8.7E-18 143.1 18.9 150 459-636 23-197 (262)
227 PRK14954 DNA polymerase III su 99.5 1.1E-13 2.3E-18 161.7 15.3 200 426-686 15-233 (620)
228 cd07418 MPP_PP7 PP7, metalloph 99.5 4.5E-14 9.7E-19 153.4 11.0 122 667-792 66-194 (377)
229 PHA02544 44 clamp loader, smal 99.5 4.6E-13 1E-17 148.0 19.2 187 427-684 21-212 (316)
230 cd07414 MPP_PP1_PPKL PP1, PPKL 99.5 2.1E-13 4.5E-18 145.7 15.4 148 623-792 22-174 (293)
231 PRK07471 DNA polymerase III su 99.5 3E-13 6.4E-18 149.5 17.1 197 25-248 13-240 (365)
232 cd07417 MPP_PP5_C PP5, C-termi 99.5 5.1E-14 1.1E-18 151.5 10.8 117 668-789 61-182 (316)
233 PRK14955 DNA polymerase III su 99.5 8.8E-14 1.9E-18 157.2 13.1 185 426-665 15-218 (397)
234 cd07419 MPP_Bsu1_C Arabidopsis 99.5 8.8E-14 1.9E-18 150.4 12.2 151 624-791 21-185 (311)
235 PLN00020 ribulose bisphosphate 99.5 2.9E-13 6.4E-18 143.6 15.7 140 458-638 149-312 (413)
236 PF05673 DUF815: Protein of un 99.5 8E-13 1.7E-17 133.6 18.0 194 26-250 22-245 (249)
237 PRK03992 proteasome-activating 99.5 2.4E-13 5.2E-18 152.9 15.3 167 426-637 130-315 (389)
238 cd07415 MPP_PP2A_PP4_PP6 PP2A, 99.5 3.1E-13 6.8E-18 143.7 15.3 149 623-792 14-167 (285)
239 cd07416 MPP_PP2B PP2B, metallo 99.5 1.1E-13 2.4E-18 148.8 12.0 148 623-792 15-167 (305)
240 KOG0744|consensus 99.5 7.4E-14 1.6E-18 142.7 9.9 148 55-210 180-343 (423)
241 COG5271 MDN1 AAA ATPase contai 99.5 2.9E-11 6.4E-16 143.6 32.3 146 459-634 890-1044(4600)
242 TIGR02903 spore_lon_C ATP-depe 99.5 1.9E-12 4.2E-17 153.1 23.1 198 427-666 154-386 (615)
243 TIGR02640 gas_vesic_GvpN gas v 99.5 5.8E-13 1.2E-17 141.9 16.2 164 38-233 9-215 (262)
244 TIGR03689 pup_AAA proteasome A 99.5 2.8E-13 6.2E-18 153.8 14.5 161 429-638 184-379 (512)
245 PRK04195 replication factor C 99.5 5E-13 1.1E-17 155.2 16.6 187 427-684 14-205 (482)
246 PRK12402 replication factor C 99.5 7E-13 1.5E-17 148.2 17.1 183 427-665 15-216 (337)
247 TIGR00390 hslU ATP-dependent p 99.5 1E-12 2.2E-17 143.2 17.5 107 125-232 248-380 (441)
248 TIGR03420 DnaA_homol_Hda DnaA 99.5 2.4E-12 5.2E-17 135.0 20.0 187 27-252 11-207 (226)
249 PRK05201 hslU ATP-dependent pr 99.5 7.3E-13 1.6E-17 144.3 16.2 106 126-232 251-382 (443)
250 CHL00176 ftsH cell division pr 99.5 4.8E-13 1E-17 157.4 16.1 194 427-678 183-395 (638)
251 PRK14971 DNA polymerase III su 99.5 7.7E-13 1.7E-17 155.7 17.7 200 426-686 16-227 (614)
252 PRK05642 DNA replication initi 99.5 1.8E-12 4E-17 135.5 18.3 189 29-251 17-213 (234)
253 KOG1969|consensus 99.5 3.1E-13 6.8E-18 151.9 13.0 204 13-255 253-519 (877)
254 KOG0731|consensus 99.5 3.5E-13 7.6E-18 155.7 13.8 164 426-639 310-497 (774)
255 PTZ00239 serine/threonine prot 99.5 2.2E-13 4.9E-18 145.5 11.4 148 623-791 15-167 (303)
256 PRK14948 DNA polymerase III su 99.5 4.8E-13 1E-17 157.3 15.1 182 426-664 15-211 (620)
257 PTZ00454 26S protease regulato 99.5 5.6E-13 1.2E-17 148.8 14.9 164 426-638 144-330 (398)
258 PTZ00480 serine/threonine-prot 99.5 4.5E-13 9.7E-18 143.4 13.5 148 623-792 31-183 (320)
259 PRK00411 cdc6 cell division co 99.5 3.7E-12 8.1E-17 145.4 21.3 223 14-255 16-263 (394)
260 TIGR01241 FtsH_fam ATP-depende 99.5 5.7E-13 1.2E-17 155.4 14.6 164 427-638 55-239 (495)
261 PRK14970 DNA polymerase III su 99.4 1.7E-12 3.6E-17 146.3 17.6 188 426-686 16-214 (367)
262 PRK14950 DNA polymerase III su 99.4 1.1E-12 2.4E-17 155.1 16.5 201 426-686 15-226 (585)
263 PRK05342 clpX ATP-dependent pr 99.4 1.7E-12 3.7E-17 145.3 17.0 188 32-230 72-357 (412)
264 KOG0739|consensus 99.4 5.8E-13 1.3E-17 134.4 11.8 181 427-663 133-329 (439)
265 TIGR02397 dnaX_nterm DNA polym 99.4 1.8E-12 4E-17 145.8 17.4 199 426-686 13-223 (355)
266 PHA02244 ATPase-like protein 99.4 6.7E-12 1.4E-16 135.0 20.6 169 426-626 95-263 (383)
267 PRK07399 DNA polymerase III su 99.4 9.4E-13 2E-17 142.9 14.1 166 426-636 3-194 (314)
268 PRK08727 hypothetical protein; 99.4 9.3E-12 2E-16 130.2 21.1 189 29-251 17-209 (233)
269 PRK00149 dnaA chromosomal repl 99.4 4.5E-12 9.8E-17 146.2 20.6 200 29-252 120-328 (450)
270 PRK12422 chromosomal replicati 99.4 5.5E-12 1.2E-16 143.2 20.8 198 28-250 108-317 (445)
271 COG1224 TIP49 DNA helicase TIP 99.4 2.7E-12 6E-17 133.2 16.3 102 530-665 292-393 (450)
272 PRK08903 DnaA regulatory inact 99.4 8.5E-12 1.8E-16 130.7 19.7 182 26-251 13-204 (227)
273 PF06068 TIP49: TIP49 C-termin 99.4 2.2E-12 4.8E-17 136.7 15.1 102 530-665 279-380 (398)
274 KOG0991|consensus 99.4 5.1E-13 1.1E-17 130.3 9.4 185 427-687 27-220 (333)
275 KOG0742|consensus 99.4 2.6E-10 5.6E-15 120.1 29.8 147 449-642 376-533 (630)
276 PRK13407 bchI magnesium chelat 99.4 2.5E-12 5.4E-17 139.6 15.5 222 27-268 4-302 (334)
277 PRK14086 dnaA chromosomal repl 99.4 9.5E-12 2.1E-16 142.9 20.7 188 29-234 286-482 (617)
278 PRK08727 hypothetical protein; 99.4 4.1E-12 8.8E-17 132.9 16.1 163 459-686 43-209 (233)
279 PTZ00361 26 proteosome regulat 99.4 1.3E-12 2.8E-17 146.7 12.7 163 427-638 183-368 (438)
280 PRK11034 clpA ATP-dependent Cl 99.4 3.5E-12 7.6E-17 152.7 17.2 178 32-230 459-694 (758)
281 PRK13407 bchI magnesium chelat 99.4 3.5E-12 7.6E-17 138.5 15.6 205 427-665 8-264 (334)
282 PRK00440 rfc replication facto 99.4 6.3E-12 1.4E-16 139.3 17.9 185 427-686 17-208 (319)
283 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.6E-12 5.7E-17 134.7 13.9 185 431-686 21-209 (226)
284 CHL00081 chlI Mg-protoporyphyr 99.4 2.8E-12 6.1E-17 139.3 14.3 176 426-636 16-231 (350)
285 KOG0726|consensus 99.4 8E-13 1.7E-17 133.0 9.2 160 426-634 184-366 (440)
286 COG0714 MoxR-like ATPases [Gen 99.4 3.4E-12 7.3E-17 141.2 15.2 174 418-632 15-197 (329)
287 PRK06620 hypothetical protein; 99.4 4E-12 8.7E-17 130.5 14.6 171 29-251 14-194 (214)
288 KOG0652|consensus 99.4 2.4E-12 5.2E-17 127.5 12.2 162 427-637 171-355 (424)
289 PRK05564 DNA polymerase III su 99.4 7E-12 1.5E-16 137.7 17.3 176 29-233 2-183 (313)
290 PRK08084 DNA replication initi 99.4 4.9E-12 1.1E-16 132.5 15.1 163 459-685 47-213 (235)
291 CHL00081 chlI Mg-protoporyphyr 99.4 1E-11 2.2E-16 135.0 17.9 235 20-272 5-322 (350)
292 PF07728 AAA_5: AAA domain (dy 99.4 1.6E-12 3.4E-17 125.1 10.3 131 459-615 1-139 (139)
293 KOG0729|consensus 99.4 1.2E-12 2.5E-17 130.1 9.5 158 427-633 177-357 (435)
294 TIGR00678 holB DNA polymerase 99.4 7E-12 1.5E-16 127.2 15.5 162 42-234 3-185 (188)
295 KOG0743|consensus 99.4 3E-12 6.6E-17 138.4 13.1 157 26-208 196-384 (457)
296 CHL00206 ycf2 Ycf2; Provisiona 99.4 2.4E-12 5.1E-17 159.1 13.7 146 456-634 1629-1814(2281)
297 PF00004 AAA: ATPase family as 99.4 2.3E-12 4.9E-17 122.7 10.8 116 460-622 1-131 (132)
298 PRK09087 hypothetical protein; 99.4 1.4E-11 3E-16 127.7 17.4 176 29-251 19-200 (226)
299 PF13177 DNA_pol3_delta2: DNA 99.4 3.1E-12 6.6E-17 125.6 11.8 151 431-625 1-162 (162)
300 COG0542 clpA ATP-binding subun 99.4 4.7E-12 1E-16 147.8 15.2 184 31-232 491-735 (786)
301 PRK07399 DNA polymerase III su 99.4 1E-11 2.2E-16 134.8 16.6 195 29-249 2-224 (314)
302 TIGR00382 clpX endopeptidase C 99.4 9.7E-12 2.1E-16 138.1 16.6 188 32-230 78-363 (413)
303 TIGR02639 ClpA ATP-dependent C 99.4 6.6E-12 1.4E-16 152.8 16.6 178 32-230 455-690 (731)
304 PRK13531 regulatory ATPase Rav 99.4 7E-11 1.5E-15 131.7 23.1 217 32-266 21-278 (498)
305 TIGR02442 Cob-chelat-sub cobal 99.4 9.1E-12 2E-16 148.5 17.3 202 426-666 3-263 (633)
306 TIGR01242 26Sp45 26S proteasom 99.4 4.4E-12 9.5E-17 142.3 13.7 167 426-637 121-306 (364)
307 PRK14088 dnaA chromosomal repl 99.4 1.9E-11 4.1E-16 139.4 18.9 205 28-255 102-314 (440)
308 PF14532 Sigma54_activ_2: Sigm 99.4 1.6E-12 3.4E-17 124.6 8.4 137 430-624 1-138 (138)
309 TIGR02030 BchI-ChlI magnesium 99.4 7.7E-12 1.7E-16 136.2 14.7 206 427-665 4-267 (337)
310 PRK09112 DNA polymerase III su 99.4 7.8E-12 1.7E-16 137.5 14.9 179 427-664 23-229 (351)
311 PF00308 Bac_DnaA: Bacterial d 99.4 1.4E-11 2.9E-16 127.4 15.8 201 28-252 5-214 (219)
312 TIGR02030 BchI-ChlI magnesium 99.4 1.8E-11 3.9E-16 133.4 17.4 225 30-272 3-309 (337)
313 PRK06893 DNA replication initi 99.4 9.4E-12 2E-16 129.9 14.5 163 459-685 41-207 (229)
314 PRK14087 dnaA chromosomal repl 99.3 3.2E-11 6.9E-16 137.7 19.9 203 27-251 111-324 (450)
315 PRK07471 DNA polymerase III su 99.3 1E-11 2.2E-16 137.3 15.2 161 427-635 19-211 (365)
316 TIGR01650 PD_CobS cobaltochela 99.3 7E-12 1.5E-16 133.7 13.0 154 32-207 46-233 (327)
317 PRK08058 DNA polymerase III su 99.3 1.2E-11 2.6E-16 136.1 15.3 156 29-204 3-179 (329)
318 COG0606 Predicted ATPase with 99.3 4.4E-12 9.5E-17 138.3 11.6 176 427-626 179-381 (490)
319 PRK08903 DnaA regulatory inact 99.3 1.4E-11 3E-16 129.1 15.1 158 458-681 43-202 (227)
320 KOG0375|consensus 99.3 1.8E-12 3.8E-17 132.9 7.9 146 668-831 89-241 (517)
321 TIGR00362 DnaA chromosomal rep 99.3 3.1E-11 6.7E-16 137.7 19.1 202 29-254 108-318 (405)
322 COG1474 CDC6 Cdc6-related prot 99.3 6.3E-11 1.4E-15 130.8 20.3 212 31-259 17-250 (366)
323 TIGR00368 Mg chelatase-related 99.3 2.6E-11 5.6E-16 139.0 17.8 185 427-629 192-396 (499)
324 PRK05564 DNA polymerase III su 99.3 1.3E-11 2.7E-16 135.7 14.3 156 427-635 4-163 (313)
325 PRK04132 replication factor C 99.3 1.3E-11 2.8E-16 147.5 15.2 161 56-252 568-737 (846)
326 TIGR01650 PD_CobS cobaltochela 99.3 2E-11 4.4E-16 130.3 15.0 156 459-635 66-231 (327)
327 COG3829 RocR Transcriptional r 99.3 5.5E-12 1.2E-16 139.4 10.9 181 28-228 242-458 (560)
328 KOG0371|consensus 99.3 1.6E-12 3.4E-17 128.0 5.5 222 668-916 61-298 (319)
329 PRK08058 DNA polymerase III su 99.3 1.1E-11 2.5E-16 136.2 12.8 163 427-633 5-178 (329)
330 COG2607 Predicted ATPase (AAA+ 99.3 9.4E-11 2E-15 115.8 17.6 194 29-253 58-280 (287)
331 COG0470 HolB ATPase involved i 99.3 3.3E-11 7.1E-16 134.0 16.4 184 31-252 1-205 (325)
332 COG4650 RtcR Sigma54-dependent 99.3 1E-11 2.3E-16 125.0 11.0 212 424-663 181-399 (531)
333 PF07726 AAA_3: ATPase family 99.3 5.4E-12 1.2E-16 114.4 7.9 109 459-579 1-112 (131)
334 PRK05642 DNA replication initi 99.3 3.5E-11 7.6E-16 125.9 15.0 148 458-664 46-197 (234)
335 PF00308 Bac_DnaA: Bacterial d 99.3 3.7E-11 8.1E-16 124.1 14.7 168 458-678 35-208 (219)
336 TIGR00678 holB DNA polymerase 99.3 8.3E-11 1.8E-15 119.3 16.1 156 458-664 15-180 (188)
337 PF01078 Mg_chelatase: Magnesi 99.3 4.2E-12 9.2E-17 126.1 6.3 146 29-196 1-204 (206)
338 KOG0372|consensus 99.3 7.8E-12 1.7E-16 122.4 7.8 118 667-793 43-169 (303)
339 TIGR03345 VI_ClpV1 type VI sec 99.3 3.8E-11 8.3E-16 146.9 15.3 181 427-665 187-386 (852)
340 PTZ00112 origin recognition co 99.3 7.7E-11 1.7E-15 136.6 16.6 216 426-687 754-987 (1164)
341 PF13177 DNA_pol3_delta2: DNA 99.3 7.6E-11 1.6E-15 115.7 14.2 143 35-195 1-162 (162)
342 PRK06871 DNA polymerase III su 99.3 4.1E-11 8.8E-16 129.5 13.1 162 430-635 5-177 (325)
343 COG0465 HflB ATP-dependent Zn 99.3 3.3E-11 7.2E-16 137.4 13.0 160 426-634 149-330 (596)
344 PRK08769 DNA polymerase III su 99.3 3.6E-11 7.8E-16 129.8 12.6 162 428-634 5-182 (319)
345 KOG0737|consensus 99.2 3.1E-11 6.8E-16 127.0 11.4 138 456-639 126-276 (386)
346 COG0593 DnaA ATPase involved i 99.2 3.7E-10 8.1E-15 123.9 20.0 196 29-252 85-292 (408)
347 KOG0374|consensus 99.2 1.5E-11 3.3E-16 132.1 8.5 119 668-792 60-185 (331)
348 PRK12422 chromosomal replicati 99.2 9.5E-11 2.1E-15 133.2 15.2 174 457-686 141-318 (445)
349 TIGR00362 DnaA chromosomal rep 99.2 3.9E-11 8.5E-16 136.8 12.2 173 457-682 136-314 (405)
350 PRK05707 DNA polymerase III su 99.2 8.4E-11 1.8E-15 128.3 14.0 143 457-635 22-176 (328)
351 TIGR00764 lon_rel lon-related 99.2 2.3E-10 4.9E-15 135.1 18.2 116 523-664 211-342 (608)
352 KOG0744|consensus 99.2 2.2E-11 4.8E-16 124.8 8.3 144 459-641 179-344 (423)
353 COG1219 ClpX ATP-dependent pro 99.2 8.2E-11 1.8E-15 120.6 12.1 170 50-230 95-346 (408)
354 PRK14087 dnaA chromosomal repl 99.2 1.2E-10 2.5E-15 133.0 14.7 178 456-686 140-324 (450)
355 CHL00095 clpC Clp protease ATP 99.2 1.9E-10 4.1E-15 141.8 17.6 182 31-230 509-760 (821)
356 COG0714 MoxR-like ATPases [Gen 99.2 3.4E-10 7.4E-15 125.2 17.9 154 31-204 24-200 (329)
357 PRK00149 dnaA chromosomal repl 99.2 1.1E-10 2.4E-15 134.7 14.4 169 457-678 148-322 (450)
358 smart00763 AAA_PrkA PrkA AAA d 99.2 3.2E-10 6.9E-15 122.4 16.6 210 427-663 51-347 (361)
359 PRK05707 DNA polymerase III su 99.2 2.1E-10 4.5E-15 125.3 15.4 166 50-248 19-205 (328)
360 TIGR02031 BchD-ChlD magnesium 99.2 1.6E-10 3.5E-15 136.2 15.4 194 457-679 16-228 (589)
361 PRK11331 5-methylcytosine-spec 99.2 5.7E-10 1.2E-14 123.5 18.6 171 427-630 175-365 (459)
362 PRK06090 DNA polymerase III su 99.2 1.9E-10 4E-15 124.1 14.4 160 429-634 5-177 (319)
363 PRK10865 protein disaggregatio 99.2 2.5E-10 5.4E-15 140.3 17.4 184 29-230 566-807 (857)
364 COG0470 HolB ATPase involved i 99.2 1.4E-10 2.9E-15 129.0 13.6 144 428-626 2-170 (325)
365 PRK10733 hflB ATP-dependent me 99.2 1.5E-10 3.3E-15 138.3 14.8 133 459-639 187-337 (644)
366 PTZ00111 DNA replication licen 99.2 4.5E-10 9.7E-15 133.4 18.4 200 417-638 440-658 (915)
367 PRK07993 DNA polymerase III su 99.2 1.3E-10 2.9E-15 127.1 13.1 161 430-634 5-177 (334)
368 TIGR02928 orc1/cdc6 family rep 99.2 4.7E-10 1E-14 126.7 17.9 217 427-687 15-252 (365)
369 PRK06964 DNA polymerase III su 99.2 1.5E-10 3.2E-15 126.1 13.0 141 458-634 22-201 (342)
370 TIGR02974 phageshock_pspF psp 99.2 2.1E-10 4.5E-15 125.9 14.1 177 33-229 1-213 (329)
371 PRK13765 ATP-dependent proteas 99.2 3.2E-10 6.9E-15 133.0 16.4 128 523-674 220-360 (637)
372 PRK14086 dnaA chromosomal repl 99.2 3E-10 6.5E-15 130.7 15.3 168 458-678 315-488 (617)
373 PRK11608 pspF phage shock prot 99.2 4.3E-10 9.3E-15 123.6 15.9 180 29-228 4-219 (326)
374 PRK08769 DNA polymerase III su 99.2 6.2E-10 1.4E-14 120.3 16.8 183 36-247 9-209 (319)
375 TIGR03346 chaperone_ClpB ATP-d 99.2 5.2E-10 1.1E-14 138.2 18.4 181 31-229 565-803 (852)
376 TIGR01817 nifA Nif-specific re 99.2 2.3E-10 5E-15 135.2 14.5 185 25-229 190-408 (534)
377 PRK11331 5-methylcytosine-spec 99.2 2.2E-10 4.8E-15 126.8 13.0 158 30-193 174-357 (459)
378 PRK09862 putative ATP-dependen 99.2 2.2E-10 4.7E-15 130.6 13.1 176 427-627 191-391 (506)
379 KOG1942|consensus 99.2 5.2E-10 1.1E-14 113.0 14.2 102 530-665 297-399 (456)
380 PRK00411 cdc6 cell division co 99.2 1.2E-09 2.6E-14 124.8 19.3 214 427-686 30-259 (394)
381 KOG2035|consensus 99.2 4.8E-10 1E-14 112.9 13.7 163 458-665 35-218 (351)
382 PRK15424 propionate catabolism 99.2 3.1E-10 6.7E-15 131.0 14.3 184 28-223 216-432 (538)
383 KOG0743|consensus 99.1 2.5E-10 5.3E-15 123.8 12.6 152 459-663 237-415 (457)
384 cd00009 AAA The AAA+ (ATPases 99.1 4.8E-10 1E-14 108.5 13.6 150 431-623 2-151 (151)
385 KOG0740|consensus 99.1 2.4E-10 5.2E-15 125.2 12.5 198 424-678 150-363 (428)
386 COG2204 AtoC Response regulato 99.1 1.4E-10 3E-15 129.1 10.7 182 28-229 138-354 (464)
387 TIGR02329 propionate_PrpR prop 99.1 3E-10 6.5E-15 131.4 13.7 179 28-225 209-419 (526)
388 PF05621 TniB: Bacterial TniB 99.1 1.3E-09 2.9E-14 114.1 16.8 217 31-257 34-272 (302)
389 PHA02244 ATPase-like protein 99.1 3.9E-10 8.4E-15 121.5 13.0 139 33-196 98-263 (383)
390 COG1224 TIP49 DNA helicase TIP 99.1 5.8E-09 1.3E-13 108.9 21.1 114 125-255 292-413 (450)
391 COG3604 FhlA Transcriptional r 99.1 9.5E-11 2.1E-15 127.7 8.1 181 29-229 221-436 (550)
392 PRK05022 anaerobic nitric oxid 99.1 6.5E-10 1.4E-14 130.1 15.3 181 29-229 185-400 (509)
393 PRK15429 formate hydrogenlyase 99.1 1.2E-09 2.5E-14 133.0 17.8 196 13-228 356-588 (686)
394 PRK07993 DNA polymerase III su 99.1 1.7E-09 3.7E-14 118.5 17.1 179 37-248 8-206 (334)
395 COG1239 ChlI Mg-chelatase subu 99.1 7.3E-10 1.6E-14 119.7 13.5 181 424-638 14-233 (423)
396 KOG0651|consensus 99.1 4.5E-10 9.8E-15 114.9 10.8 154 427-626 132-305 (388)
397 smart00350 MCM minichromosome 99.1 1.1E-09 2.3E-14 127.8 15.5 199 418-638 194-401 (509)
398 cd00009 AAA The AAA+ (ATPases 99.1 6.6E-10 1.4E-14 107.6 11.7 145 34-192 1-150 (151)
399 PRK06871 DNA polymerase III su 99.1 3.4E-09 7.5E-14 114.7 18.1 150 37-205 8-177 (325)
400 PRK14088 dnaA chromosomal repl 99.1 3.5E-10 7.5E-15 129.1 10.8 170 458-679 131-306 (440)
401 PRK09087 hypothetical protein; 99.1 4.7E-10 1E-14 116.3 10.8 152 459-685 46-199 (226)
402 TIGR02442 Cob-chelat-sub cobal 99.1 2.3E-09 4.9E-14 128.2 18.1 210 30-257 3-287 (633)
403 PRK06620 hypothetical protein; 99.1 1.4E-09 3.1E-14 111.8 14.1 145 458-684 45-192 (214)
404 KOG0745|consensus 99.1 1.4E-09 3.1E-14 115.8 14.1 170 50-230 224-487 (564)
405 KOG0373|consensus 99.1 5.5E-10 1.2E-14 107.4 9.8 118 667-793 46-172 (306)
406 PF05673 DUF815: Protein of un 99.1 5.7E-09 1.2E-13 106.0 17.4 178 427-639 27-209 (249)
407 PF06068 TIP49: TIP49 C-termin 99.1 3.9E-09 8.4E-14 112.4 16.9 96 125-232 279-382 (398)
408 KOG0732|consensus 99.1 1.4E-09 3E-14 129.7 14.9 192 427-676 265-479 (1080)
409 COG1221 PspF Transcriptional r 99.1 4.6E-10 1E-14 122.7 10.1 184 25-228 72-288 (403)
410 PRK05917 DNA polymerase III su 99.1 7.4E-10 1.6E-14 117.0 11.0 143 435-624 5-154 (290)
411 PRK06090 DNA polymerase III su 99.0 6.6E-09 1.4E-13 112.2 17.4 150 37-204 9-177 (319)
412 PRK10820 DNA-binding transcrip 99.0 1.8E-09 3.9E-14 126.3 14.0 184 26-229 199-417 (520)
413 PRK11388 DNA-binding transcrip 99.0 1.6E-09 3.5E-14 131.0 14.0 183 28-229 322-534 (638)
414 PF00158 Sigma54_activat: Sigm 99.0 7.9E-10 1.7E-14 108.8 9.0 139 33-191 1-167 (168)
415 COG1220 HslU ATP-dependent pro 99.0 5.7E-09 1.2E-13 108.1 15.2 106 126-232 252-383 (444)
416 COG0606 Predicted ATPase with 99.0 1.3E-09 2.8E-14 119.3 11.2 150 28-199 176-384 (490)
417 PF07728 AAA_5: AAA domain (dy 99.0 7.9E-11 1.7E-15 113.2 1.5 111 54-186 1-139 (139)
418 PRK12377 putative replication 99.0 1.5E-09 3.3E-14 113.2 10.5 106 459-584 103-210 (248)
419 TIGR00764 lon_rel lon-related 99.0 2.1E-08 4.6E-13 118.5 21.1 118 126-254 219-371 (608)
420 COG1474 CDC6 Cdc6-related prot 99.0 7.1E-09 1.5E-13 114.7 16.0 217 429-690 19-246 (366)
421 PF01637 Arch_ATPase: Archaeal 99.0 8.3E-10 1.8E-14 116.2 8.2 196 33-234 1-228 (234)
422 TIGR03015 pepcterm_ATPase puta 99.0 4.4E-08 9.5E-13 105.7 21.7 186 50-254 41-246 (269)
423 smart00350 MCM minichromosome 99.0 5E-09 1.1E-13 122.3 15.3 199 32-255 204-454 (509)
424 PRK07276 DNA polymerase III su 99.0 4.1E-09 8.8E-14 111.9 13.0 156 431-633 6-171 (290)
425 KOG0990|consensus 99.0 2.5E-09 5.4E-14 110.5 10.7 195 427-692 41-243 (360)
426 PF03215 Rad17: Rad17 cell cyc 99.0 4.4E-09 9.6E-14 121.0 13.8 214 18-252 6-269 (519)
427 PF07724 AAA_2: AAA domain (Cd 99.0 1E-09 2.3E-14 108.3 7.3 110 51-171 2-131 (171)
428 PF07726 AAA_3: ATPase family 99.0 5.3E-11 1.1E-15 108.1 -1.8 108 54-187 1-130 (131)
429 COG1239 ChlI Mg-chelatase subu 99.0 1.4E-08 3.1E-13 109.8 16.1 163 29-207 15-232 (423)
430 PRK06964 DNA polymerase III su 99.0 9.1E-09 2E-13 112.3 14.8 154 38-205 8-202 (342)
431 TIGR00368 Mg chelatase-related 99.0 2.3E-09 5E-14 123.0 10.7 151 28-198 189-395 (499)
432 PF06309 Torsin: Torsin; Inte 98.9 2.1E-09 4.5E-14 97.6 7.9 66 418-485 16-81 (127)
433 KOG1969|consensus 98.9 1.3E-08 2.7E-13 115.5 15.1 173 459-687 328-516 (877)
434 smart00763 AAA_PrkA PrkA AAA d 98.9 2.2E-08 4.9E-13 108.3 16.4 95 126-229 238-348 (361)
435 PRK08699 DNA polymerase III su 98.9 3.9E-09 8.4E-14 115.2 10.5 140 458-633 22-181 (325)
436 PRK08116 hypothetical protein; 98.9 8.5E-09 1.9E-13 109.8 12.7 108 459-584 116-225 (268)
437 PTZ00111 DNA replication licen 98.9 1E-08 2.2E-13 122.1 14.3 162 32-209 451-659 (915)
438 PRK05818 DNA polymerase III su 98.9 5.3E-09 1.1E-13 107.9 10.3 136 457-628 7-151 (261)
439 COG0593 DnaA ATPase involved i 98.9 7.7E-09 1.7E-13 113.6 11.3 179 455-690 111-295 (408)
440 KOG2680|consensus 98.9 1.5E-08 3.2E-13 103.0 11.9 102 530-665 289-390 (454)
441 TIGR00602 rad24 checkpoint pro 98.9 2.1E-08 4.6E-13 117.5 14.4 219 427-685 84-327 (637)
442 TIGR02031 BchD-ChlD magnesium 98.8 5.5E-08 1.2E-12 114.9 17.0 195 49-269 13-255 (589)
443 PF01695 IstB_IS21: IstB-like 98.8 5.1E-09 1.1E-13 104.3 6.1 108 459-588 49-158 (178)
444 PF12775 AAA_7: P-loop contain 98.8 9.3E-09 2E-13 109.5 8.0 149 42-210 24-196 (272)
445 PRK08699 DNA polymerase III su 98.8 5.5E-08 1.2E-12 106.2 14.0 153 38-204 8-182 (325)
446 PRK13765 ATP-dependent proteas 98.8 4.8E-08 1E-12 114.9 14.0 119 126-255 228-381 (637)
447 PRK08181 transposase; Validate 98.8 2.4E-08 5.2E-13 105.6 10.2 108 459-588 108-217 (269)
448 PRK06526 transposase; Provisio 98.8 6.3E-09 1.4E-13 109.5 5.8 108 459-589 100-210 (254)
449 KOG1970|consensus 98.8 9E-08 2E-12 105.7 14.7 214 16-250 67-319 (634)
450 KOG1942|consensus 98.8 2.2E-07 4.8E-12 94.4 15.8 114 125-255 297-419 (456)
451 TIGR02915 PEP_resp_reg putativ 98.8 1.1E-07 2.4E-12 110.4 15.9 182 28-229 136-352 (445)
452 PRK12377 putative replication 98.8 2.1E-08 4.6E-13 104.7 8.8 143 25-186 68-222 (248)
453 PRK07132 DNA polymerase III su 98.7 1.3E-07 2.8E-12 101.6 14.6 141 435-634 4-159 (299)
454 PRK07132 DNA polymerase III su 98.7 3.2E-07 7E-12 98.6 17.1 164 38-231 3-176 (299)
455 KOG0741|consensus 98.7 9.6E-09 2.1E-13 112.0 5.4 135 459-641 258-418 (744)
456 PF14532 Sigma54_activ_2: Sigm 98.7 6.6E-09 1.4E-13 99.5 3.7 130 34-195 1-137 (138)
457 PRK05917 DNA polymerase III su 98.7 1.6E-07 3.4E-12 99.5 14.3 160 38-234 4-175 (290)
458 PRK09862 putative ATP-dependen 98.7 1.4E-08 3.1E-13 115.9 6.4 150 28-197 188-391 (506)
459 PRK08116 hypothetical protein; 98.7 1.6E-07 3.6E-12 100.0 13.8 159 22-196 76-251 (268)
460 COG2607 Predicted ATPase (AAA+ 98.7 3E-07 6.5E-12 91.4 14.4 176 428-639 61-241 (287)
461 PRK10923 glnG nitrogen regulat 98.7 1.8E-07 3.9E-12 109.5 15.4 180 29-228 136-350 (469)
462 PRK06835 DNA replication prote 98.7 5.3E-08 1.1E-12 106.1 9.6 109 458-585 184-294 (329)
463 TIGR03015 pepcterm_ATPase puta 98.7 6.9E-07 1.5E-11 96.3 17.7 174 459-665 45-228 (269)
464 PRK07952 DNA replication prote 98.7 8.3E-08 1.8E-12 100.0 9.7 108 459-585 101-210 (244)
465 PF13173 AAA_14: AAA domain 98.7 1E-07 2.2E-12 90.0 9.2 123 53-198 3-126 (128)
466 smart00382 AAA ATPases associa 98.7 1.4E-07 3E-12 90.4 10.4 126 52-193 2-146 (148)
467 KOG0377|consensus 98.6 8.6E-09 1.9E-13 108.9 1.8 118 670-792 168-293 (631)
468 PRK15115 response regulator Gl 98.6 3.2E-07 6.9E-12 106.6 15.0 176 32-230 135-348 (444)
469 COG1484 DnaC DNA replication p 98.6 9.9E-08 2.1E-12 100.6 9.5 110 459-589 107-218 (254)
470 PRK07952 DNA replication prote 98.6 1.1E-07 2.4E-12 99.0 9.6 147 22-186 63-221 (244)
471 PRK07276 DNA polymerase III su 98.6 8.5E-07 1.8E-11 94.4 16.2 147 35-204 6-172 (290)
472 PRK13406 bchD magnesium chelat 98.6 2.4E-07 5.1E-12 108.4 12.9 175 458-665 26-208 (584)
473 PRK15455 PrkA family serine pr 98.6 7.1E-07 1.5E-11 101.0 15.0 185 425-632 74-341 (644)
474 TIGR00040 yfcE phosphoesterase 98.6 2.2E-07 4.9E-12 91.2 9.8 61 670-735 4-64 (158)
475 KOG1514|consensus 98.6 1.1E-06 2.3E-11 100.2 16.2 228 12-256 380-630 (767)
476 PRK09183 transposase/IS protei 98.6 2E-07 4.3E-12 99.0 9.6 107 459-588 104-214 (259)
477 KOG0478|consensus 98.6 5E-07 1.1E-11 102.0 13.0 184 420-627 422-616 (804)
478 PF12775 AAA_7: P-loop contain 98.6 6.2E-07 1.3E-11 95.7 13.2 155 459-640 35-196 (272)
479 smart00382 AAA ATPases associa 98.6 2.2E-07 4.8E-12 89.0 9.0 118 459-579 4-125 (148)
480 PF00493 MCM: MCM2/3/5 family 98.6 5.3E-08 1.1E-12 107.2 4.9 223 421-663 18-272 (331)
481 PRK08939 primosomal protein Dn 98.5 5.9E-07 1.3E-11 97.3 12.8 109 459-588 158-269 (306)
482 PRK05818 DNA polymerase III su 98.5 1.3E-06 2.8E-11 90.5 14.5 125 50-194 5-147 (261)
483 PRK11361 acetoacetate metaboli 98.5 7.5E-07 1.6E-11 104.0 14.7 181 29-229 141-356 (457)
484 TIGR01818 ntrC nitrogen regula 98.5 1.4E-06 3E-11 101.8 16.7 180 30-229 133-347 (463)
485 KOG2227|consensus 98.5 7.7E-07 1.7E-11 96.8 12.8 219 427-690 150-380 (529)
486 KOG2227|consensus 98.5 4.7E-06 1E-10 90.8 17.8 216 15-254 137-379 (529)
487 PRK06921 hypothetical protein; 98.5 2.8E-07 6E-12 98.1 8.0 105 458-585 118-230 (266)
488 COG1241 MCM2 Predicted ATPase 98.5 1.4E-06 3E-11 101.9 14.0 225 419-663 278-536 (682)
489 KOG1051|consensus 98.5 5.5E-07 1.2E-11 107.5 10.4 121 32-170 563-711 (898)
490 PF13173 AAA_14: AAA domain 98.4 1.3E-06 2.8E-11 82.4 10.3 121 459-629 4-127 (128)
491 PRK08181 transposase; Validate 98.4 7.1E-07 1.5E-11 94.5 9.1 126 51-195 105-243 (269)
492 PF05729 NACHT: NACHT domain 98.4 3.7E-06 8E-11 83.2 12.7 149 55-208 3-164 (166)
493 KOG2680|consensus 98.4 9.1E-06 2E-10 83.2 15.3 114 125-255 289-410 (454)
494 PF12774 AAA_6: Hydrolytic ATP 98.4 6.2E-06 1.3E-10 85.4 14.6 133 459-633 34-176 (231)
495 PF03215 Rad17: Rad17 cell cyc 98.4 9.7E-06 2.1E-10 93.7 17.7 218 431-686 23-268 (519)
496 PRK06581 DNA polymerase III su 98.4 4.1E-06 8.8E-11 84.6 12.6 146 437-635 3-159 (263)
497 KOG0480|consensus 98.4 1.8E-06 3.8E-11 96.9 10.6 200 416-637 334-542 (764)
498 PRK10365 transcriptional regul 98.4 5.8E-06 1.3E-10 96.0 15.7 175 31-229 139-352 (441)
499 COG1484 DnaC DNA replication p 98.4 1.3E-06 2.7E-11 92.3 9.0 119 51-186 104-230 (254)
500 PRK06835 DNA replication prote 98.3 3E-06 6.4E-11 92.6 12.0 122 51-187 182-306 (329)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.2e-96 Score=841.36 Aligned_cols=625 Identities=61% Similarity=0.985 Sum_probs=578.6
Q ss_pred chhhhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC
Q psy14500 7 DEEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL 86 (938)
Q Consensus 7 ~e~~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~ 86 (938)
.|...+.|++|+.+|++.+|.+++|++|||++++++++++|.+.+++|.+|+|+||+|||.+++.+|.++..+++|..+.
T Consensus 146 ~~~~~~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~ 225 (786)
T COG0542 146 AEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLK 225 (786)
T ss_pred cccchhhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHc
Confidence 35566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC-ccchhhhhhhhccCCceEEEE
Q psy14500 87 SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG-SIDAGNMLKPELSRGELHCIG 165 (938)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~-~~~~~~~L~~~l~~~~i~vI~ 165 (938)
+..++.+|++.+.+|++|+|++|++++.+++++...+ ++||||||+|.+.+.+.+.| +.++.|.|++.|.+|.+.+|+
T Consensus 226 ~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLARGeL~~IG 304 (786)
T COG0542 226 DKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPALARGELRCIG 304 (786)
T ss_pred CCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHHhcCCeEEEE
Confidence 9999999999999999999999999999999999777 99999999999999988766 588999999999999999999
Q ss_pred ecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhh
Q psy14500 166 ATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAID 245 (938)
Q Consensus 166 ~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ 245 (938)
+||..+|+++++.|+||.|||+.|.+..|+.++...||+.+..+|+.+|++.|+++|+.+++.+|.+|+++|++|++|++
T Consensus 305 ATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LPDKAID 384 (786)
T COG0542 305 ATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLPDKAID 384 (786)
T ss_pred eccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCCchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 246 LIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDS 325 (938)
Q Consensus 246 ll~~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (938)
++|+|+++.+.... .|..++.+++++.++..+.+.+.++.|... +..+..+
T Consensus 385 LiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~~----------------------------k~~~~~~ 435 (786)
T COG0542 385 LLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEKE----------------------------KKLIDEI 435 (786)
T ss_pred HHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHHH----------------------------HHHHHHH
Confidence 99999999999888 999999999999999999998888765100 0000000
Q ss_pred HHHHHHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCC
Q psy14500 326 QQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGI 405 (938)
Q Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~ 405 (938)
. +++...+|+++..+. . .|+.++|++++++|+|+
T Consensus 436 ~--------------------------~~~~~~~~~~~~~~~-------------------~-~v~~~~Ia~vv~~~TgI 469 (786)
T COG0542 436 I--------------------------KLKEGRIPELEKELE-------------------A-EVDEDDIAEVVARWTGI 469 (786)
T ss_pred H--------------------------HHhhhhhhhHHHHHh-------------------h-ccCHHHHHHHHHHHHCC
Confidence 0 001123333333221 1 28999999999999999
Q ss_pred CccccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC
Q psy14500 406 PVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE 485 (938)
Q Consensus 406 ~~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~ 485 (938)
|+.++.+.+...+.++++.|.+.|+||++|+..+..++++.+.|+.+|++|.+++||.||+|||||++|++||..+|+..
T Consensus 470 Pv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e 549 (786)
T COG0542 470 PVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE 549 (786)
T ss_pred ChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCce
Q psy14500 486 ESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRT 565 (938)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~ 565 (938)
..++++|||+|...|++++|+|+||||+||++++.+++.+++.|++||+||||||+||+++|.||++||+|+++|+.|++
T Consensus 550 ~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdGrLTD~~Gr~ 629 (786)
T COG0542 550 QALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDGRLTDGQGRT 629 (786)
T ss_pred ccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCCeeecCCCCE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCeEEEEecCCCchhhhhhhcc----hHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHH
Q psy14500 566 INFRNTIIVMTSNLGSDKIKEMEKG----DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILK 641 (938)
Q Consensus 566 ~~~~~~iiI~ttn~~~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~ 641 (938)
++|+|++||||||.|+..+.+.... ..+..+..+++.++..|+|+|++|+|.+|+|.|++++++.+|+...+.++.
T Consensus 630 VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~ 709 (786)
T COG0542 630 VDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLA 709 (786)
T ss_pred EecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999988776532 356778889999999999999999999999999999999999999999999
Q ss_pred HHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhH
Q psy14500 642 NKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTL 715 (938)
Q Consensus 642 ~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~ 715 (938)
.++..+++++.+++++.++|+..+|++.||+|++.+. +++.+ .++.+..++.|.+.+.+...+.+-
T Consensus 710 ~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~---Iq~~i-----~~~La~~iL~g~~~~~~~v~v~~~ 775 (786)
T COG0542 710 KRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRA---IQQEI-----EDPLADEILFGKIEDGGTVKVDVD 775 (786)
T ss_pred HHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHH---HHHHH-----HHHHHHHHHhcccCCCcEEEEEec
Confidence 9999889999999999999999999999999999999 88888 578889999999999777766554
No 2
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=2e-84 Score=786.80 Aligned_cols=692 Identities=59% Similarity=0.968 Sum_probs=642.5
Q ss_pred hhhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14500 9 EHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 88 (938)
Q Consensus 9 ~~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~ 88 (938)
...++|++|+.+|++++||++++++|||++++++++.+|++...+|++|+||||||||++|+.+|..+..+.+|..+.+.
T Consensus 156 ~~~~~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~ 235 (857)
T PRK10865 156 DQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGR 235 (857)
T ss_pred cchhHHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCC
Confidence 44568999999999999999999999999999999999999999999999999999999999999999998999999999
Q ss_pred eEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecC
Q psy14500 89 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATT 168 (938)
Q Consensus 89 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn 168 (938)
+++.++++.+..+.++.|+++..++.+|.++....+++||||||+|.+.+.+.+.++.++++.|++.+++|.+++|++||
T Consensus 236 ~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaTt 315 (857)
T PRK10865 236 RVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATT 315 (857)
T ss_pred EEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcCC
Confidence 99999999999999999999999999999987666789999999999998877777888999999999999999999999
Q ss_pred hhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHH
Q psy14500 169 LNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 248 (938)
Q Consensus 169 ~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 248 (938)
.++|++++.+|+++.|||+.|.++.|+.+++..|++.+..+++.++++.++++++..++.++.+|++++++|++|+++++
T Consensus 316 ~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~LiD 395 (857)
T PRK10865 316 LDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLID 395 (857)
T ss_pred CHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 249 EAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQI 328 (938)
Q Consensus 249 ~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (938)
.+++.++......|..+..+++.+.++..+++.+..+.+..+..|+.++++++++.++++..+.+.|..++..+++....
T Consensus 396 ~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~ 475 (857)
T PRK10865 396 EAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQTI 475 (857)
T ss_pred HHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999888999999999999999999999999888778888999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCcc
Q psy14500 329 KEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVS 408 (938)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~ 408 (938)
+.++++++.+++.+...+++..++++.+..+++++..+......... ...++...|+.++|+.++++|+|+|+.
T Consensus 476 ~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~~~i~~vv~~~tgip~~ 549 (857)
T PRK10865 476 KAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEGK------TMRLLRNKVTDAEIAEVLARWTGIPVS 549 (857)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhcc------ccccccCccCHHHHHHHHHHHHCCCch
Confidence 88889999999999999999999999999999998877665432111 344567889999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce
Q psy14500 409 KIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 488 (938)
Q Consensus 409 ~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~ 488 (938)
++...+...+.++++.|++.++||+.++..+...+.+.+.++.+|.+|.+++||+||||||||++|++||+.+++.+.++
T Consensus 550 ~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~ 629 (857)
T PRK10865 550 RMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAM 629 (857)
T ss_pred hhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcE
Confidence 99999999999999999999999999999999999999999999999988999999999999999999999999888899
Q ss_pred EEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeec
Q psy14500 489 IRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINF 568 (938)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~ 568 (938)
++++|++|...+..+.++|.++||+|++.++.+...++..|++||||||++++++.+++.|+++|++|+++++.|+++++
T Consensus 630 i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd~ 709 (857)
T PRK10865 630 VRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVDF 709 (857)
T ss_pred EEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEee
Confidence 99999999988888999999999999998888999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCchhhhhhhcc-hHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHcc
Q psy14500 569 RNTIIVMTSNLGSDKIKEMEKG-DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 647 (938)
Q Consensus 569 ~~~iiI~ttn~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~ 647 (938)
++++||+|||.+...+.+.++. ....+...+...+.+.|.|+|++|+|.++.|.|++.+++.+|+...+.++..+++..
T Consensus 710 rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~ 789 (857)
T PRK10865 710 RNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEER 789 (857)
T ss_pred cccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999999999998877654443 345556677788889999999999999999999999999999999999998888777
Q ss_pred CCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehh
Q psy14500 648 NMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 714 (938)
Q Consensus 648 ~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v 714 (938)
++.+.++++++++|++.+|++.||+|+|.++ +++.+ .++.+..++.|.+.++++..+.+
T Consensus 790 gi~l~is~~al~~L~~~gy~~~~GARpL~r~---I~~~i-----~~~la~~iL~g~~~~~~~~~~~~ 848 (857)
T PRK10865 790 GYEIHISDEALKLLSENGYDPVYGARPLKRA---IQQQI-----ENPLAQQILSGELVPGKVIRLEV 848 (857)
T ss_pred CCcCcCCHHHHHHHHHcCCCccCChHHHHHH---HHHHH-----HHHHHHHHHcCcCCCCCEEEEEE
Confidence 8889999999999999999999999999999 88888 56788889999999988877754
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=1.4e-83 Score=776.04 Aligned_cols=675 Identities=42% Similarity=0.698 Sum_probs=600.7
Q ss_pred hhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14500 10 HIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 89 (938)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~ 89 (938)
..++|++|+.+|++++||++++++|||++++++++.+|.+...+|++|+||||||||++|+.+|+.+..+.+|..+.+..
T Consensus 166 ~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~ 245 (852)
T TIGR03345 166 GTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVR 245 (852)
T ss_pred chhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCe
Confidence 34689999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred EEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecCh
Q psy14500 90 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTL 169 (938)
Q Consensus 90 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~ 169 (938)
++.++++.+.+++++.|+++.+++.++.++.+...++||||||+|.+.+.+.+.+.+++.+.|++.+++|.+++|+|||.
T Consensus 246 i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~ 325 (852)
T TIGR03345 246 LLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTW 325 (852)
T ss_pred EEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCH
Confidence 99999999998889999999999999999986667899999999999987766667788899999999999999999999
Q ss_pred hHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHH
Q psy14500 170 NEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 249 (938)
Q Consensus 170 ~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 249 (938)
.+|+.++.+|++|.|||..|.|++|+.+++..||+.+...++.++++.++++++..++.+|.+|++++++|++|++++|+
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdllde 405 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDT 405 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 250 AAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDE--SSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQ 327 (938)
Q Consensus 250 a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (938)
|++.++....+.|..+..+++.+..+..+...+..+... ....+..++++++.++..++..+...|..++........
T Consensus 406 a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (852)
T TIGR03345 406 ACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILA 485 (852)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988899999999999999999999988665332 223466777888999999999999999988766543332
Q ss_pred HHHHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCc
Q psy14500 328 IKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPV 407 (938)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~ 407 (938)
...+... .........+..+..+++++..+..... +..+....|+.++|+.++++|+|+|+
T Consensus 486 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~i~~vv~~~tgip~ 546 (852)
T TIGR03345 486 LRAELEA---------DADAPADDDAALRAQLAELEAALASAQG----------EEPLVFPEVDAQAVAEVVADWTGIPV 546 (852)
T ss_pred HHHHhhh---------cccchhhhhHHHHHHHHHHHHHHHHHhh----------ccccccceecHHHHHHHHHHHHCCCc
Confidence 2221110 0111123344455566777766555433 23455678999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc
Q psy14500 408 SKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES 487 (938)
Q Consensus 408 ~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~ 487 (938)
.++...+...+.++++.|.+.|+||+.+++.+..++.+.+.++.+|.+|.+++||+||||||||++|++||+.+++....
T Consensus 547 ~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~ 626 (852)
T TIGR03345 547 GRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQN 626 (852)
T ss_pred hhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred eEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceee
Q psy14500 488 IIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN 567 (938)
Q Consensus 488 ~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~ 567 (938)
++++||++|...+++++++|+++||+|+.+++.++..++..|++||+|||||++++++++.|+++|++|.++++.|+.++
T Consensus 627 ~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd 706 (852)
T TIGR03345 627 LITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREID 706 (852)
T ss_pred eEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCchhhhhhhcc-----hHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHH
Q psy14500 568 FRNTIIVMTSNLGSDKIKEMEKG-----DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKN 642 (938)
Q Consensus 568 ~~~~iiI~ttn~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~ 642 (938)
+.+++||+|||.+...|.+.+.+ +.+.+...+.+.+...|+|+|++||+ +|+|.||+.+++.+|+...+..+..
T Consensus 707 ~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~ 785 (852)
T TIGR03345 707 FKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIAR 785 (852)
T ss_pred ccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999988775533 24566778888999999999999997 9999999999999999999999988
Q ss_pred HHHcc-CCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEe
Q psy14500 643 KLLKM-NMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSL 712 (938)
Q Consensus 643 ~~~~~-~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~ 712 (938)
++... ++.+.++++++++|+..+|++.+|+|.+.+. +++.+ .++.+..++.|-.-...+..+
T Consensus 786 rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~---Ie~~i-----~~~la~~~l~~~~~~~~~~~~ 848 (852)
T TIGR03345 786 RLKENHGAELVYSEALVEHIVARCTEVESGARNIDAI---LNQTL-----LPELSRQILERLAAGEPIERI 848 (852)
T ss_pred HHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHH---HHHHH-----HHHHHHHHHhChhcCCCeeEE
Confidence 88766 8999999999999999999999999999999 88777 456677777776666555544
No 4
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=2.5e-82 Score=773.55 Aligned_cols=695 Identities=61% Similarity=0.987 Sum_probs=640.2
Q ss_pred hhhhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCC
Q psy14500 8 EEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLS 87 (938)
Q Consensus 8 e~~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~ 87 (938)
+.+.++|++|+.+|++++||+.++++|||++++++++.+|.+..++|++|+||||||||++++.++..+..+.+|..+.+
T Consensus 150 ~~~~~~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~ 229 (852)
T TIGR03346 150 EDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKN 229 (852)
T ss_pred ccchhHHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred CeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEec
Q psy14500 88 KKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGAT 167 (938)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~t 167 (938)
.+++.++++.+..+++|.|+++..++.++.++....+++||||||+|.|.+.+.+.++.++.+.|++.++++.+.+|++|
T Consensus 230 ~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaT 309 (852)
T TIGR03346 230 KRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT 309 (852)
T ss_pred CeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeC
Confidence 99999999999988899999999999999999766668999999999999876666667788999999999999999999
Q ss_pred ChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHH
Q psy14500 168 TLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLI 247 (938)
Q Consensus 168 n~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll 247 (938)
|.++|++++.+|+++.|||+.|.++.|+.+++..||+.+..+++.++++.+++.++..++.+|.+|++++++|++|++++
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidll 389 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLI 389 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 248 DEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQ 327 (938)
Q Consensus 248 ~~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (938)
|+|++.++......|..+..+++++..+..+.+.+..+.+..+..|+.++++++.++..++..++..|..+...+.....
T Consensus 390 d~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (852)
T TIGR03346 390 DEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQ 469 (852)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988899999999999999999999999877666777889999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCc
Q psy14500 328 IKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPV 407 (938)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~ 407 (938)
....+..++.++..+...++..++.++.+..++++++.+..+....... ....+....|+.++|..+++.|+|+|.
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~v~~~~i~~v~~~~tgip~ 545 (852)
T TIGR03346 470 IKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEE----TKPRLLREEVTAEEIAEVVSRWTGIPV 545 (852)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhc----cccccccCCcCHHHHHHHHHHhcCCCc
Confidence 8777777777777788888888899999999999988887665431110 123456678999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc
Q psy14500 408 SKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES 487 (938)
Q Consensus 408 ~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~ 487 (938)
..+...+...+.++++.|.+.|+||+.+++.+..++.+.+.++..|.+|.+++||+||||||||++|++||+.+++.+.+
T Consensus 546 ~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~ 625 (852)
T TIGR03346 546 SKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDA 625 (852)
T ss_pred ccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred eEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceee
Q psy14500 488 IIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN 567 (938)
Q Consensus 488 ~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~ 567 (938)
++++||++|...+..+.++|.++||+|+.+++.++..++..|++||+||||+++++++++.|+++|++|+++++.|++++
T Consensus 626 ~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd 705 (852)
T TIGR03346 626 MVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred EEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCchhhhhhhcc-hHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHc
Q psy14500 568 FRNTIIVMTSNLGSDKIKEMEKG-DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 646 (938)
Q Consensus 568 ~~~~iiI~ttn~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~ 646 (938)
+++++||+|||.+...+.+..+. +...+...+++.+.+.|+|+|++|+|.+++|.|++++++.+|+...+..+.+.+..
T Consensus 706 ~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~ 785 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAE 785 (852)
T ss_pred cCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999877664433 44566777888899999999999999999999999999999999999999998888
Q ss_pred cCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehh
Q psy14500 647 MNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 714 (938)
Q Consensus 647 ~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v 714 (938)
.++.+.++++++++|++.+|++.+|+|+|.+. +++.+ .++.+..++.|.+.++++..+.+
T Consensus 786 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~---i~~~i-----~~~l~~~~l~~~~~~~~~~~~~~ 845 (852)
T TIGR03346 786 RKITLELSDAALDFLAEAGYDPVYGARPLKRA---IQREI-----ENPLAKKILAGEVADGDTIVVDV 845 (852)
T ss_pred CCCeecCCHHHHHHHHHhCCCCCCCchhHHHH---HHHHH-----HHHHHHHHHhCCCCCCCEEEEEe
Confidence 88899999999999999999999999999999 99888 67888889999999888877654
No 5
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=5.8e-79 Score=742.47 Aligned_cols=631 Identities=51% Similarity=0.822 Sum_probs=565.9
Q ss_pred hhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14500 10 HIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 89 (938)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~ 89 (938)
+.++|++|+.+|+++++.+.+++++|+++++++++++|.+..++|+||+||||||||++|+.+|..+..+++|..+.+..
T Consensus 158 ~~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~ 237 (821)
T CHL00095 158 KTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKL 237 (821)
T ss_pred cchHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCe
Confidence 45789999999999999999999999999999999999999999999999999999999999999998889999999999
Q ss_pred EEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecCh
Q psy14500 90 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTL 169 (938)
Q Consensus 90 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~ 169 (938)
++.++++.+.++++|+|++++.++.+++++.. .+++||||||+|.+++.+.+.++.++.+.|++.+.+|.+++|++||.
T Consensus 238 i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~-~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt~ 316 (821)
T CHL00095 238 VITLDIGLLLAGTKYRGEFEERLKRIFDEIQE-NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTL 316 (821)
T ss_pred EEEeeHHHHhccCCCccHHHHHHHHHHHHHHh-cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCCH
Confidence 99999999999999999999999999999974 45889999999999988776677788999999999999999999999
Q ss_pred hHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHH
Q psy14500 170 NEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 249 (938)
Q Consensus 170 ~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 249 (938)
.+|++++..|+++.+||..|.++.|+.++...|++.+...++..+++.++++++..++.+|.+|++++++|++|++++|.
T Consensus 317 ~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld~ 396 (821)
T CHL00095 317 DEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLDE 396 (821)
T ss_pred HHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 250 AAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIK 329 (938)
Q Consensus 250 a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (938)
+++.++......|..+..+++++..+..+.+.+..+.+... ..+++.+..++++++..+...|..++.
T Consensus 397 a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 464 (821)
T CHL00095 397 AGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDFET---AKQLRDREMEVRAQIAAIIQSKKTEEE--------- 464 (821)
T ss_pred HHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcchHH---HHHHHHHHHHHHHHHHHHHHHHHhhhc---------
Confidence 99999988888899999999999998888877766644321 122222222333333333333322100
Q ss_pred HHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCccc
Q psy14500 330 EEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSK 409 (938)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~ 409 (938)
.......|+.++|..+++.|+|+|+.+
T Consensus 465 -----------------------------------------------------~~~~~~~v~~~~i~~~~~~~tgip~~~ 491 (821)
T CHL00095 465 -----------------------------------------------------KRLEVPVVTEEDIAEIVSAWTGIPVNK 491 (821)
T ss_pred -----------------------------------------------------ccccCCccCHHHHHHHHHHHHCCCchh
Confidence 001135699999999999999999999
Q ss_pred cchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceE
Q psy14500 410 IVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESII 489 (938)
Q Consensus 410 ~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~ 489 (938)
+...+...+.++++.|.+.|+||+++++.+..++.+.+.++..|.+|.+++||+||||||||++|++||+.+|+...+++
T Consensus 492 ~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~ 571 (821)
T CHL00095 492 LTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMI 571 (821)
T ss_pred hchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998889999
Q ss_pred EeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecC
Q psy14500 490 RIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFR 569 (938)
Q Consensus 490 ~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 569 (938)
++||++|...+.++.++|+++||+|+++++.+...++..|++||+|||||++++++++.|+++||+|++++..|++++++
T Consensus 572 ~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~ 651 (821)
T CHL00095 572 RLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFK 651 (821)
T ss_pred EEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCCchhhhhh-----hc--------chHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHH
Q psy14500 570 NTIIVMTSNLGSDKIKEM-----EK--------GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 636 (938)
Q Consensus 570 ~~iiI~ttn~~~~~~~~~-----~~--------~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~ 636 (938)
+++||+|||.+...+... +. ..+..+...+.+.+...|+|+|++|+|.+|+|.||+.+++.+|+...
T Consensus 652 ~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~ 731 (821)
T CHL00095 652 NTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIM 731 (821)
T ss_pred ceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHH
Confidence 999999999998765432 11 12455677788889999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehh
Q psy14500 637 LNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 714 (938)
Q Consensus 637 l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v 714 (938)
+.++..+++.+++.+.++++++++|+..+|++.+|+|+|+++ +++.+ .++....++.|.+..++...+++
T Consensus 732 l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~---i~~~i-----~~~l~~~~l~~~~~~g~~v~~~~ 801 (821)
T CHL00095 732 LKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRA---IMRLL-----EDPLAEEVLSFKIKPGDIIIVDV 801 (821)
T ss_pred HHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHH---HHHHH-----HHHHHHHHHhCccCCCCEEEEEE
Confidence 999999998889999999999999999999999999999999 88888 56788889999998888877765
No 6
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-75 Score=690.33 Aligned_cols=568 Identities=46% Similarity=0.761 Sum_probs=517.1
Q ss_pred hhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeE
Q psy14500 11 IGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKI 90 (938)
Q Consensus 11 ~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~ 90 (938)
..+|++|+.+|+++++.+++++++|+++++++++.+|.+..++|+||+||||||||++|++++..+.....|..+.++.+
T Consensus 166 ~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~ 245 (758)
T PRK11034 166 EERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTI 245 (758)
T ss_pred hhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeE
Confidence 46899999999999999999999999999999999999999999999999999999999999999988889999999999
Q ss_pred EEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCC-CCccchhhhhhhhccCCceEEEEecCh
Q psy14500 91 LLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV-EGSIDAGNMLKPELSRGELHCIGATTL 169 (938)
Q Consensus 91 ~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~-~~~~~~~~~L~~~l~~~~i~vI~~tn~ 169 (938)
+.++++.+..+.++.|+++..++.++..+... ++.||||||+|.+.+.+.+ .+..++.+.|++.++++.+++|++||.
T Consensus 246 ~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~-~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt~ 324 (758)
T PRK11034 246 YSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTY 324 (758)
T ss_pred EeccHHHHhcccchhhhHHHHHHHHHHHHHhc-CCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCCh
Confidence 99999999998999999999999999988744 4679999999999887653 445678899999999999999999999
Q ss_pred hHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHH
Q psy14500 170 NEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 249 (938)
Q Consensus 170 ~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 249 (938)
++|++++..|++|.|||+.|.+++|+.+++..||+.+..+|+.++++.++++++..++.++.+|++++++|+++++++++
T Consensus 325 ~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidllde 404 (758)
T PRK11034 325 QEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDE 404 (758)
T ss_pred HHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 250 AAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIK 329 (938)
Q Consensus 250 a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (938)
+++..+.... .
T Consensus 405 a~a~~~~~~~-------------------------~-------------------------------------------- 415 (758)
T PRK11034 405 AGARARLMPV-------------------------S-------------------------------------------- 415 (758)
T ss_pred HHHhhccCcc-------------------------c--------------------------------------------
Confidence 9986542100 0
Q ss_pred HHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCccc
Q psy14500 330 EEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSK 409 (938)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~ 409 (938)
. -+..|+.++|.+++++|+|+|...
T Consensus 416 ----------------------------------------------------~---~~~~v~~~~i~~v~~~~tgip~~~ 440 (758)
T PRK11034 416 ----------------------------------------------------K---RKKTVNVADIESVVARIARIPEKS 440 (758)
T ss_pred ----------------------------------------------------c---cccccChhhHHHHHHHHhCCChhh
Confidence 0 012377888999999999999999
Q ss_pred cchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceE
Q psy14500 410 IVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESII 489 (938)
Q Consensus 410 ~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~ 489 (938)
+...+...+.++++.|.+.|+||+++++.+..++...+.++..+.+|.+++||+||||||||++|+++|+.+ +.+++
T Consensus 441 ~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~~~i 517 (758)
T PRK11034 441 VSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIELL 517 (758)
T ss_pred hhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CCCcE
Confidence 998899999999999999999999999999999999999999999999999999999999999999999998 67999
Q ss_pred EeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecC
Q psy14500 490 RIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFR 569 (938)
Q Consensus 490 ~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 569 (938)
++||++|...+....++|.++||+|++.++.++..++..|++||||||||++++++++.|+++|++|.+++..|++++++
T Consensus 518 ~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 518 RFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred EeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCC
Confidence 99999999988899999999999999988899999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCCCchhhhhhh-cchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccC
Q psy14500 570 NTIIVMTSNLGSDKIKEME-KGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMN 648 (938)
Q Consensus 570 ~~iiI~ttn~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~ 648 (938)
+++||+|||.+...+.... +.........+.+.++..|.|+|++|+|.+|.|+|++.+++.+|+...+.++.++++..+
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 9999999999877654321 111111123445677889999999999999999999999999999999999999999999
Q ss_pred CeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehh
Q psy14500 649 MDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 714 (938)
Q Consensus 649 ~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v 714 (938)
+++.++++++++|+..+|++.+|+|+|++. +++.+ .++.+..++.|.+.+++...+.+
T Consensus 678 i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~---i~~~l-----~~~la~~il~~~~~~~~~~~v~~ 735 (758)
T PRK11034 678 VSLEVSQEARDWLAEKGYDRAMGARPMARV---IQDNL-----KKPLANELLFGSLVDGGQVTVAL 735 (758)
T ss_pred CCceECHHHHHHHHHhCCCCCCCCchHHHH---HHHHH-----HHHHHHHHHhCcccCCCEEEEEE
Confidence 999999999999999999999999999999 99888 67888899999999888877654
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2.9e-75 Score=702.77 Aligned_cols=567 Identities=50% Similarity=0.815 Sum_probs=519.1
Q ss_pred hhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14500 10 HIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 89 (938)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~ 89 (938)
+.++|++|+.+|++++||++++++|||++++++++..|.+..++|+||+||||||||++|+++|+++..+.+|..+.++.
T Consensus 161 ~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~ 240 (731)
T TIGR02639 161 QEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAK 240 (731)
T ss_pred chhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCC-CCccchhhhhhhhccCCceEEEEecC
Q psy14500 90 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV-EGSIDAGNMLKPELSRGELHCIGATT 168 (938)
Q Consensus 90 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~-~~~~~~~~~L~~~l~~~~i~vI~~tn 168 (938)
++.++++.+.++.++.|++++.++.+++++... .++||||||+|.+++.+.+ +++.++++.|++.+++|.+.+|++||
T Consensus 241 ~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaTt 319 (731)
T TIGR02639 241 IYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE-PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGSTT 319 (731)
T ss_pred EEEecHHHHhhhccccchHHHHHHHHHHHHhcc-CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEecC
Confidence 999999999999999999999999999999754 5889999999999987653 33467889999999999999999999
Q ss_pred hhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHH
Q psy14500 169 LNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 248 (938)
Q Consensus 169 ~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 248 (938)
..+|+.++..|+++.|||+.|+++.|+.+++..||+.+...++..+++.++++++..++.++.+|++++++|++|+++++
T Consensus 320 ~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~lld 399 (731)
T TIGR02639 320 YEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVID 399 (731)
T ss_pred HHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHHH
Confidence 99999999999999999999999999999999999999998888889999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 249 EAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQI 328 (938)
Q Consensus 249 ~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (938)
++++.++.....
T Consensus 400 ~a~a~~~~~~~~-------------------------------------------------------------------- 411 (731)
T TIGR02639 400 EAGASFRLRPKA-------------------------------------------------------------------- 411 (731)
T ss_pred HhhhhhhcCccc--------------------------------------------------------------------
Confidence 988755421000
Q ss_pred HHHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCcc
Q psy14500 329 KEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVS 408 (938)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~ 408 (938)
.-+..|+.+++..+++.|+|+|+.
T Consensus 412 --------------------------------------------------------~~~~~v~~~~i~~~i~~~tgiP~~ 435 (731)
T TIGR02639 412 --------------------------------------------------------KKKANVSVKDIENVVAKMAHIPVK 435 (731)
T ss_pred --------------------------------------------------------ccccccCHHHHHHHHHHHhCCChh
Confidence 001348889999999999999999
Q ss_pred ccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce
Q psy14500 409 KIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 488 (938)
Q Consensus 409 ~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~ 488 (938)
.+...+...+.+++..|.+.|+||+++++.+..++...+.++..|.+|.+++||+||||||||++|++||+.+ +.++
T Consensus 436 ~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~~~~ 512 (731)
T TIGR02639 436 TVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---GVHL 512 (731)
T ss_pred hhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---cCCe
Confidence 9988899999999999999999999999999999999999999999999999999999999999999999998 6789
Q ss_pred EEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeec
Q psy14500 489 IRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINF 568 (938)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~ 568 (938)
+++||++|...+....++|+++||+|++.++.+...++..|++||+|||||++++++++.|+++|++|.+++..|+++++
T Consensus 513 ~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~ 592 (731)
T TIGR02639 513 ERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADF 592 (731)
T ss_pred EEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCchhhhhhh-cchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHcc
Q psy14500 569 RNTIIVMTSNLGSDKIKEME-KGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 647 (938)
Q Consensus 569 ~~~iiI~ttn~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~ 647 (938)
++++||+|||.+...+.... +-......+.+...+...|.|+|++|+|.+|+|.||+.+++.+|+...+.++.++++..
T Consensus 593 ~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~ 672 (731)
T TIGR02639 593 RNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEK 672 (731)
T ss_pred CCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999987665421 11223334567788899999999999999999999999999999999999999999888
Q ss_pred CCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEe
Q psy14500 648 NMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSL 712 (938)
Q Consensus 648 ~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~ 712 (938)
++.+.++++++++|+..+|++.+|+|.|+++ +++.+ .++.+..++.|.+.+.++..+
T Consensus 673 ~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~---i~~~~-----~~~l~~~~l~~~~~~~~~~~~ 729 (731)
T TIGR02639 673 NIKLELTDDAKKYLAEKGYDEEFGARPLARV---IQEEI-----KKPLSDEILFGKLKKGGSVKV 729 (731)
T ss_pred CCeEEeCHHHHHHHHHhCCCcccCchHHHHH---HHHHh-----HHHHHHHHHhCcCCCCCEEEE
Confidence 9999999999999999999999999999999 88888 567788888899888777654
No 8
>KOG1051|consensus
Probab=100.00 E-value=3.7e-68 Score=617.49 Aligned_cols=673 Identities=46% Similarity=0.748 Sum_probs=599.0
Q ss_pred hhhhhHHHHHhhhHHHHHhcCCCCCcccc-HHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC
Q psy14500 8 EEHIGYLKKYTIDLTEKARLGKLDPVIGR-DDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL 86 (938)
Q Consensus 8 e~~~~~~~~~~~~l~~~~~~~~~~~lvG~-~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~ 86 (938)
.-..++|++|+.+++..++.+.+++++|+ ++++++++++|.+..++|.+|+|+||+|||.++.-+++++..+++|..+.
T Consensus 163 ~~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~ 242 (898)
T KOG1051|consen 163 LWPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLK 242 (898)
T ss_pred ccchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCcccc
Confidence 44678999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEe
Q psy14500 87 SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGA 166 (938)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~ 166 (938)
...++.++.+.+..|.+++|+++.+++.+..++...++++||||||+|.+.+.+.+.+..++.+.|+..+.++.+.+|+|
T Consensus 243 ~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGa 322 (898)
T KOG1051|consen 243 DKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGA 322 (898)
T ss_pred ccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEEEec
Confidence 99999999999999999999999999999999987778899999999999998877667789999999999999999999
Q ss_pred cChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhH
Q psy14500 167 TTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDL 246 (938)
Q Consensus 167 tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~l 246 (938)
|+..+|++....+|++-+||+.+.++.|+.++...||+.+..+++.++++.+++.++..++..+.+|++.+++|+.++++
T Consensus 323 tT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl 402 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDL 402 (898)
T ss_pred ccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 247 IDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQ 326 (938)
Q Consensus 247 l~~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (938)
.+++++..+....+.|..+..+++...++..++..++++.+.++.+|+. .+.+.........+...|..++....++.
T Consensus 403 ~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~--~~~~~~~~~~~~~l~~~~~~~~s~~~~l~ 480 (898)
T KOG1051|consen 403 EDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPS--LESLAPSKPTQQPLSASVDSERSVIEELK 480 (898)
T ss_pred HHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccc--cccccccccccccchhhhccchhHHhhhc
Confidence 9999999999888999999999999999999999999988866655555 44555555566677788888888877777
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCC
Q psy14500 327 QIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIP 406 (938)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~ 406 (938)
..+.......- +.++....++..+.++.+..+| .+... .+. + +..+..+++...+.|+|+|
T Consensus 481 ~~~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p-~~~~~---~~~---------~-----~~~~~~~i~~~~s~~tgip 541 (898)
T KOG1051|consen 481 LKKNSLDRNSL-LAKAHRPNDYTRETDLRYGRIP-DELSE---KSN---------D-----NQGGESDISEVVSRWTGIP 541 (898)
T ss_pred cccCCcccchh-hhcccCCCCcchhhhccccccc-hhhhh---hcc---------c-----ccCCccchhhhhhhhcCCc
Confidence 76666655555 7888999999999999999888 22211 110 1 1127888999999999999
Q ss_pred ccccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC
Q psy14500 407 VSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 486 (938)
Q Consensus 407 ~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~ 486 (938)
...+...+...+..|++.|.+.|+||++|+.+|..++++++.|+.+| .|...+||.||+|+|||.+|+++|..+|++..
T Consensus 542 ~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~ 620 (898)
T KOG1051|consen 542 VDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEE 620 (898)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999998 78889999999999999999999999999999
Q ss_pred ceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCcee
Q psy14500 487 SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 566 (938)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~ 566 (938)
.++++||++|.. +++++|.++||+|+.+++.+++.+++.|++||+|||||++++.+++.|++++|+|+++|+.|+.+
T Consensus 621 ~~IriDmse~~e---vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~V 697 (898)
T KOG1051|consen 621 NFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREV 697 (898)
T ss_pred ceEEechhhhhh---hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEe
Confidence 999999999988 88999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEecCCCchhhhhhhc-----c-------hHHHHHHHHHHHHh----hccChHHhhcCCeEEEccCCCHHHHH
Q psy14500 567 NFRNTIIVMTSNLGSDKIKEMEK-----G-------DKEIIKLAVMNEVK----IYFRPEFINRIDDIIVFRYLNRKNIL 630 (938)
Q Consensus 567 ~~~~~iiI~ttn~~~~~~~~~~~-----~-------~~~~~~~~~~~~l~----~~~~~~l~~R~~~~i~f~~l~~e~~~ 630 (938)
++.|+|||||+|.+...+...+. . .....+..+.+... ..|+|+|++|+|.++.|.|++.+++.
T Consensus 698 d~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~ 777 (898)
T KOG1051|consen 698 DFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELI 777 (898)
T ss_pred eccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHh
Confidence 99999999999998876654432 1 12223345566677 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCee
Q psy14500 631 SIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQ 710 (938)
Q Consensus 631 ~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~ 710 (938)
+|+...+....+++...++.+.+++.+..++...+|++.||++.|... +++.+ ..+....++ |++-+....
T Consensus 778 ~i~~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~---i~~~~-----~~~la~~~l-~ei~~~~~~ 848 (898)
T KOG1051|consen 778 EIVNKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRS---IEERF-----ENRLAEALL-GEVEDGLTE 848 (898)
T ss_pred hhhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHH---HHHHH-----HHHHhhhhe-eeecCCceE
Confidence 999999999999888877778899999999999999999999999988 77776 334444444 666665555
Q ss_pred Eehh
Q psy14500 711 SLDT 714 (938)
Q Consensus 711 ~~~v 714 (938)
.+.+
T Consensus 849 ~i~~ 852 (898)
T KOG1051|consen 849 RILV 852 (898)
T ss_pred EEEe
Confidence 5433
No 9
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=100.00 E-value=1.1e-55 Score=455.83 Aligned_cols=263 Identities=35% Similarity=0.687 Sum_probs=247.2
Q ss_pred cccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHHHHHhccccCCc
Q psy14500 669 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSK 748 (938)
Q Consensus 669 ~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~ 748 (938)
.|.+||||||+++|.++|++++|++..|.++++||+++|||.|.+|+++++++++.+.+|+||||.+++.++.+......
T Consensus 3 ~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~~~~~~VlGNHD~~lL~~~~g~~~~~~ 82 (279)
T TIGR00668 3 TYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLGDAVRLVLGNHDLHLLAVFAGISRNKP 82 (279)
T ss_pred EEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCCeEEEEChhHHHHHHHhcCCCccCc
Confidence 48899999999999999999999888899999999999999999999999999877889999999999998877555555
Q ss_pred cccHHHhhCCCCHHHHHHHHhcCCceEEeC--CEEEEecccCcCCCHHHHHHHhHHHHHHhhhccHHHHHHHhcCCCCCC
Q psy14500 749 LDTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSIN 826 (938)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~--~~~~vHAg~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 826 (938)
.+++..++.+++.+++++||+++|++++.+ ++++||||++|.|+..++..++++++..|++++|..|+..||+++|..
T Consensus 83 ~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w~l~~a~~~a~eve~~L~~~~~~~fl~~mygn~p~~ 162 (279)
T TIGR00668 83 KDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNR 162 (279)
T ss_pred hHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHhhCCCCcc
Confidence 678888999999999999999999998754 599999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCCcCCCceEEEccCCCc-Cccc
Q psy14500 827 WDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL-GLIM 905 (938)
Q Consensus 827 w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~~~~-~~~~ 905 (938)
|++++ .|++|.|+|+|+|||||||+.+|+++|..|+.+. ..|.++.|||+.+++......||||||++. |...
T Consensus 163 W~~~l-----~g~~r~r~i~n~~TRmR~c~~~g~ld~~~k~~~~-~~p~~~~PWf~~~~~~~~~~~ivfGHWaaL~g~~~ 236 (279)
T TIGR00668 163 WSPEL-----QGLARLRFIINAFTRMRFCFPNGQLDMYSKESPE-DAPAPLKPWFAIPGPVYEEYSIAFGHWASLEGEGT 236 (279)
T ss_pred CCCCC-----chHHHHHHHHHHHhhheeeCCCCCCcccccCCcc-cCCCCCCCcccCCCccCCCCcEEEeehhhccCCCC
Confidence 99987 9999999999999999999999999999999885 458889999999999888899999999999 8999
Q ss_pred CCCeEEeccccccCCeEEEEEecCCcEEEeeC
Q psy14500 906 KPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 937 (938)
Q Consensus 906 ~~~~~~lDtG~~~gg~Lta~~l~~~~~~~v~~ 937 (938)
.++.++|||||||||+|||++|++++++++++
T Consensus 237 ~~~~~~lDtGCvWGg~Lta~~l~~~~~~~~~~ 268 (279)
T TIGR00668 237 PEGIYALDTGCCWGGRLTCLRWEDKQYFTQPS 268 (279)
T ss_pred CCCeEEcccccccCcceEEEEecCCCEEEEEc
Confidence 99999999999999999999999999999987
No 10
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=100.00 E-value=4.2e-51 Score=424.59 Aligned_cols=253 Identities=47% Similarity=0.867 Sum_probs=234.2
Q ss_pred ccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHHHHHhccccCCcc
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSKL 749 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~~ 749 (938)
|.+||||||+++|+++|++++|.+..|.++++||+|||||.|.+|+++++++...+.+|+||||.+++.+..+.......
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~~~v~~VlGNHD~~ll~~~~g~~~~~~~ 81 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLGDSAKTVLGNHDLHLLAVAAGIKKPKKK 81 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcCCCeEEEcCCchHHHHHHhcCccccccH
Confidence 67999999999999999999998788999999999999999999999999997779999999999999887654444556
Q ss_pred ccHHHhhCCCCHHHHHHHHhcCCceEEeC--CEEEEecccCcCCCHHHHHHHhHHHHHHhhhccHHHHHHHhcCCCCCCC
Q psy14500 750 DTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINW 827 (938)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~l~~lp~~~~~~--~~~~vHAg~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w 827 (938)
+++.+++..++.+++++||+++|++++.+ ++++||||++|.|+..++..++++++..|++..|..++..||++.+..|
T Consensus 82 ~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w~~~~~~~~a~eve~~l~~~~~~~~~~~my~~~p~~W 161 (257)
T cd07422 82 DTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQWSIEQALKLAREVEAALRGPNYREFLKNMYGNEPDRW 161 (257)
T ss_pred hHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCCCHHHHHHHHHHHHHHhcCCcHHHHHHHhhCCCCccc
Confidence 77888888888899999999999999987 7999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCCcCCCceEEEccCCCcC-cccC
Q psy14500 828 DNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTLG-LIMK 906 (938)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~~~~~-~~~~ 906 (938)
++.+ .|.+|.|+|+|+|||||||+.+|+++|..|+.+ +..|+++.|||+.|++...+..||||||++.+ ....
T Consensus 162 ~~~l-----~g~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~-~~~~~~~~pWf~~~~~~~~~~~i~fGHwa~l~~~~~~ 235 (257)
T cd07422 162 SDDL-----TGIDRLRYIVNAFTRMRFCTPDGRLDFSSKGAP-EDAPKGLKPWFELPNRKTDDYTIVFGHWAALGGKTRP 235 (257)
T ss_pred Cccc-----CccHHHHHHHHHhhceeeecCCCCEeecccCCc-ccCCCCCCCceeCCCccCCCCcEEEeecccccCccCC
Confidence 9987 999999999999999999999999999999988 45688999999999998889999999999995 5555
Q ss_pred CCeEEeccccccCCeEEEEEec
Q psy14500 907 PNIICLDTGCVWGNKLTALCLE 928 (938)
Q Consensus 907 ~~~~~lDtG~~~gg~Lta~~l~ 928 (938)
+++++|||||||||+|||++|+
T Consensus 236 ~~~~~lDtGcvwG~~lta~~~~ 257 (257)
T cd07422 236 NNIIALDTGCVWGGKLTALRLE 257 (257)
T ss_pred CCeEEeccccccCCeeeEEEeC
Confidence 7799999999999999999985
No 11
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=100.00 E-value=8.9e-51 Score=427.18 Aligned_cols=263 Identities=43% Similarity=0.832 Sum_probs=243.5
Q ss_pred cccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHHHHHhccccCCc
Q psy14500 669 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSK 748 (938)
Q Consensus 669 ~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~ 748 (938)
.+.+||||||++++.+++++++|++..|.++++||++||||.|.+|++++++++.++.+|+||||.+++.+..+......
T Consensus 3 ~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~~~~~~VlGNHD~~ll~~~~g~~~~~~ 82 (275)
T PRK00166 3 TYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLGDSAVTVLGNHDLHLLAVAAGIKRNKK 82 (275)
T ss_pred EEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhcCCCeEEEecChhHHHHHhhcCCccccc
Confidence 37799999999999999999998777899999999999999999999999998777899999999999988765444345
Q ss_pred cccHHHhhCCCCHHHHHHHHhcCCceEE--eCCEEEEecccCcCCCHHHHHHHhHHHHHHhhhccHHHHHHHhcCCCCCC
Q psy14500 749 LDTFDDILDAPDKKKLVSWLRTQPLAIY--YKKYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSIN 826 (938)
Q Consensus 749 ~~~~~~~~~~~~~~~~~~~l~~lp~~~~--~~~~~~vHAg~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 826 (938)
.+++.+++...+.+++++||+++|++++ .+++++||||++|.|...+...++++++..|++..|..++..+|++.+..
T Consensus 83 ~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~~~~~~~~~a~eve~~l~~~~~~~~~~~my~~~p~~ 162 (275)
T PRK00166 83 KDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQWDLATALALAREVEAVLRSDDYRDFLANMYGNEPDR 162 (275)
T ss_pred hhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCCCHHHHHHHHHHHHHHhcCCcHHHHHHHhcCCCcCc
Confidence 5677777777778899999999999999 66899999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCCcCCCceEEEccCCCc-Cccc
Q psy14500 827 WDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL-GLIM 905 (938)
Q Consensus 827 w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~~~~-~~~~ 905 (938)
|+..+ .|.+|.|+++|+|||||||+.+|.++|..|+.+ +..|+++.|||++|++......|||||||+. |...
T Consensus 163 W~~~l-----~~~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~-~~~~~~~~pWf~~~~~~~~~~~i~fGHwa~l~G~~~ 236 (275)
T PRK00166 163 WSPDL-----TGLERLRYIINAFTRMRFCTPDGRLDFKCKGPP-DEAPAGLKPWFEVPGRKTRDYTIVFGHWAALEGLTT 236 (275)
T ss_pred cCccc-----CchHHHHHHHHHHhhhhcccCCCceeecccCCc-ccCCcCCCCCccCcCccCCCCeEEEecCcccCCccC
Confidence 99987 999999999999999999999999999999977 4567899999999999888889999999999 9999
Q ss_pred CCCeEEeccccccCCeEEEEEecCCcEEEeeC
Q psy14500 906 KPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 937 (938)
Q Consensus 906 ~~~~~~lDtG~~~gg~Lta~~l~~~~~~~v~~ 937 (938)
.+|+++|||||||||+|||++|++++++||++
T Consensus 237 ~~~~~~LDtGcvwgg~Lta~~l~~~~~~~~~~ 268 (275)
T PRK00166 237 PPNIIALDTGCVWGGKLTALRLEDKQIFQVPC 268 (275)
T ss_pred CCCeEEeecccccCCeEEEEEeCCCcEEEEeC
Confidence 99999999999999999999999999999986
No 12
>KOG0733|consensus
Probab=100.00 E-value=1.7e-43 Score=382.80 Aligned_cols=453 Identities=20% Similarity=0.271 Sum_probs=296.2
Q ss_pred CCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
+|+++=|.++.+.+|...+. -.++++|||+||||||||+||+++|.++ +.+++.++..
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isAp 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISAP 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecch
Confidence 48899999999888877553 3567889999999999999999999999 9999999999
Q ss_pred hhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cchhhhhhhhcc--------CCceEEEE
Q psy14500 97 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPELS--------RGELHCIG 165 (938)
Q Consensus 97 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l~--------~~~i~vI~ 165 (938)
.+++| +.|+.|+.++.+|++|.. ..|||+||||||.+.+.+..++. ..+...|+..|. ...|+||+
T Consensus 258 eivSG--vSGESEkkiRelF~~A~~-~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg 334 (802)
T KOG0733|consen 258 EIVSG--VSGESEKKIRELFDQAKS-NAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG 334 (802)
T ss_pred hhhcc--cCcccHHHHHHHHHHHhc-cCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence 99965 559999999999999985 55999999999999998865332 224445555552 24699999
Q ss_pred ecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchh
Q psy14500 166 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 242 (938)
Q Consensus 166 ~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 242 (938)
|||+++ .+||+|+| ||+. |.+..|+..+|..||+.+++.+..... -....+++++.+|+ +++
T Consensus 335 ATnRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~-----~d~~qlA~lTPGfV-----GAD 399 (802)
T KOG0733|consen 335 ATNRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGD-----FDFKQLAKLTPGFV-----GAD 399 (802)
T ss_pred cCCCCc-----ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCC-----cCHHHHHhcCCCcc-----chh
Confidence 999999 99999999 9997 999999999999999999986543322 23567889988887 455
Q ss_pred hhhHHHHHHHHHHHh---hcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 243 AIDLIDEAAAKIKIE---IDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEK 319 (938)
Q Consensus 243 a~~ll~~a~~~~~~~---~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (938)
...++..|+..+-.+ ..+.|.... ....|..+ ++++.-++-+. ++.
T Consensus 400 L~AL~~~Aa~vAikR~ld~~~~p~~~~----------------~~~ed~~~-~~~~~d~S~i~--------------~~~ 448 (802)
T KOG0733|consen 400 LMALCREAAFVAIKRILDQSSSPLTKV----------------PISEDSSN-KDAEEDQSSIK--------------ITS 448 (802)
T ss_pred HHHHHHHHHHHHHHHHhhcccCccccC----------------CccccccC-CCccchhhhhh--------------cCC
Confidence 556666655443211 011000000 00000000 00000000000 000
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHH
Q psy14500 320 TLIKDSQQIKEEI-EKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEI 398 (938)
Q Consensus 320 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~ 398 (938)
.. +..-++ +.++..+.+....-. ++ .+-.-.|..+|+..+
T Consensus 449 ~~-----~~~~~ld~v~~~~i~~~~d~~S------------~E----------------------~~~~L~i~~eDF~~A 489 (802)
T KOG0733|consen 449 NA-----ERPLELDRVVQDAILNNPDPLS------------KE----------------------LLEGLSIKFEDFEEA 489 (802)
T ss_pred cc-----cccccHHHHHHHHHHhCCCCcC------------hH----------------------HhccceecHHHHHHH
Confidence 00 000000 000000100000000 00 000112344444444
Q ss_pred HHHhhC-------CCccccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHH
Q psy14500 399 VSRTTG-------IPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKT 471 (938)
Q Consensus 399 ~~~~~~-------~~~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT 471 (938)
+...-. +.++...+.+...+.+++.+|...|+ ..+.+.=...+.|+..|. .+||+||||||||
T Consensus 490 l~~iQPSakREGF~tVPdVtW~dIGaL~~vR~eL~~aI~------~PiK~pd~~k~lGi~~Ps----GvLL~GPPGCGKT 559 (802)
T KOG0733|consen 490 LSKIQPSAKREGFATVPDVTWDDIGALEEVRLELNMAIL------APIKRPDLFKALGIDAPS----GVLLCGPPGCGKT 559 (802)
T ss_pred HHhcCcchhcccceecCCCChhhcccHHHHHHHHHHHHh------hhccCHHHHHHhCCCCCC----ceEEeCCCCccHH
Confidence 432211 11233444444445555555544332 122221122234444333 5999999999999
Q ss_pred HHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccCH------
Q psy14500 472 ELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS------ 543 (938)
Q Consensus 472 ~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~------ 543 (938)
.||+++|++. +.+|+.+...++.+. |+|+++. +.++...+.+.+|||||||+|.+-|
T Consensus 560 LlAKAVANEa---g~NFisVKGPELlNk------------YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~ 624 (802)
T KOG0733|consen 560 LLAKAVANEA---GANFISVKGPELLNK------------YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEG 624 (802)
T ss_pred HHHHHHhhhc---cCceEeecCHHHHHH------------HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCC
Confidence 9999999988 899999999998875 8998775 6677777888899999999998754
Q ss_pred -----HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCC
Q psy14500 544 -----DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRID 616 (938)
Q Consensus 544 -----~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~ 616 (938)
.+.|+||..||... .-.++.+|++||.+.- ++|+++ +|+|
T Consensus 625 s~~s~RvvNqLLtElDGl~---------~R~gV~viaATNRPDi------------------------IDpAiLRPGRlD 671 (802)
T KOG0733|consen 625 SSVSSRVVNQLLTELDGLE---------ERRGVYVIAATNRPDI------------------------IDPAILRPGRLD 671 (802)
T ss_pred chhHHHHHHHHHHHhcccc---------cccceEEEeecCCCcc------------------------cchhhcCCCccC
Confidence 68999999998632 3356788999997542 456666 7999
Q ss_pred eEEEccCCCHHHHHHHHHHHH
Q psy14500 617 DIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 617 ~~i~f~~l~~e~~~~i~~~~l 637 (938)
.+..+.+++.++...|++...
T Consensus 672 k~LyV~lPn~~eR~~ILK~~t 692 (802)
T KOG0733|consen 672 KLLYVGLPNAEERVAILKTIT 692 (802)
T ss_pred ceeeecCCCHHHHHHHHHHHh
Confidence 999999999999999966544
No 13
>KOG0730|consensus
Probab=100.00 E-value=3.9e-38 Score=347.69 Aligned_cols=406 Identities=23% Similarity=0.329 Sum_probs=287.3
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEE
Q psy14500 49 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 128 (938)
Q Consensus 49 ~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL 128 (938)
-+.+.++|+|||||||||.+++++|++. ++.++.++...+. .++.|+.+..++..|+++.....|+++
T Consensus 215 ~~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli--~k~~gEte~~LR~~f~~a~k~~~psii 282 (693)
T KOG0730|consen 215 IKPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELI--SKFPGETESNLRKAFAEALKFQVPSII 282 (693)
T ss_pred CCCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHHHH--HhcccchHHHHHHHHHHHhccCCCeeE
Confidence 3667889999999999999999999998 7889999998888 568899999999999999866669999
Q ss_pred EEeCccccccCCCCCCc--cchhhhhhhhcc----CCceEEEEecChhHHHHhhhcCHHHHc-ccce-EEeeCCCHHHHH
Q psy14500 129 FIDELHTMIGTGKVEGS--IDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER-RFQK-ILVEEPDIEETI 200 (938)
Q Consensus 129 ~iDEid~l~~~~~~~~~--~~~~~~L~~~l~----~~~i~vI~~tn~~~~~~~~~ld~al~~-Rf~~-i~~~~p~~~e~~ 200 (938)
||||+|.+.+.+..... ..+...|+.++. .+++++|++||+++ .+|++++| ||+. +.+..|+..+|.
T Consensus 283 ~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-----sld~alRRgRfd~ev~IgiP~~~~Rl 357 (693)
T KOG0730|consen 283 FIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-----SLDPALRRGRFDREVEIGIPGSDGRL 357 (693)
T ss_pred eHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc-----ccChhhhcCCCcceeeecCCCchhHH
Confidence 99999999987654332 234444555553 57899999999999 99999998 9996 999999999999
Q ss_pred HHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHH
Q psy14500 201 SILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHE 280 (938)
Q Consensus 201 ~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~ 280 (938)
.|++.+.+.++ .. ++..+..++..+.+|. +++...++..+......+
T Consensus 358 dIl~~l~k~~~----~~-~~~~l~~iA~~thGyv-----GaDL~~l~~ea~~~~~r~----------------------- 404 (693)
T KOG0730|consen 358 DILRVLTKKMN----LL-SDVDLEDIAVSTHGYV-----GADLAALCREASLQATRR----------------------- 404 (693)
T ss_pred HHHHHHHHhcC----Cc-chhhHHHHHHHccchh-----HHHHHHHHHHHHHHHhhh-----------------------
Confidence 99999888643 22 5677888889888887 334444444433211100
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHhhhhhhhcchH
Q psy14500 281 AIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELN 360 (938)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 360 (938)
T Consensus 405 -------------------------------------------------------------------------------- 404 (693)
T KOG0730|consen 405 -------------------------------------------------------------------------------- 404 (693)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCccccchHHHHHHHHHHHHhhccccChHHHHHHHH
Q psy14500 361 KLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVS 440 (938)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~ 440 (938)
+...++.+. ..+.++.++..+ ++.++..+.+...+++++..|++.|.+- +.
T Consensus 405 ----~~~~~~~A~--------------~~i~psa~Re~~-----ve~p~v~W~dIGGlE~lK~elq~~V~~p------~~ 455 (693)
T KOG0730|consen 405 ----TLEIFQEAL--------------MGIRPSALREIL-----VEMPNVSWDDIGGLEELKRELQQAVEWP------LK 455 (693)
T ss_pred ----hHHHHHHHH--------------hcCCchhhhhee-----ccCCCCChhhccCHHHHHHHHHHHHhhh------hh
Confidence 000000000 111111122111 2233333344444555555555444222 11
Q ss_pred HHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCcccccc--
Q psy14500 441 NAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG-- 518 (938)
Q Consensus 441 ~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~-- 518 (938)
..-...+.|+..|+ .+|||||||||||++|+++|+.. +.+|+.+.+.++.++ |+|.++.
T Consensus 456 ~pe~F~r~Gi~ppk----GVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~sk------------~vGeSEr~i 516 (693)
T KOG0730|consen 456 HPEKFARFGISPPK----GVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFSK------------YVGESERAI 516 (693)
T ss_pred chHHHHHhcCCCCc----eEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHHHH------------hcCchHHHH
Confidence 11122344554443 59999999999999999999998 899999999988764 7777664
Q ss_pred chhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhh
Q psy14500 519 GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 587 (938)
Q Consensus 519 ~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 587 (938)
+.++...+.+.++|+||||||.+. ..+++.||+.|+... ...++++|++||.+..
T Consensus 517 r~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e---------~~k~V~ViAATNRpd~----- 582 (693)
T KOG0730|consen 517 REVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE---------ALKNVLVIAATNRPDM----- 582 (693)
T ss_pred HHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc---------ccCcEEEEeccCChhh-----
Confidence 667777888888999999998754 467899999998521 2367899999998553
Q ss_pred hcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHH-HHHHHHhh
Q psy14500 588 EKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA-ALKKISNI 664 (938)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~-~~~~L~~~ 664 (938)
+++++++ |+|.+|.+++++.+...+|++...++ +.++++ -++.|+..
T Consensus 583 -------------------ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk-----------mp~~~~vdl~~La~~ 632 (693)
T KOG0730|consen 583 -------------------IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK-----------MPFSEDVDLEELAQA 632 (693)
T ss_pred -------------------cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc-----------CCCCccccHHHHHHH
Confidence 6788887 99999999999999999997665544 334444 34556552
Q ss_pred cccccccccccccc
Q psy14500 665 GFDLIYGARDVHGC 678 (938)
Q Consensus 665 ~~~~~~~~~dl~~~ 678 (938)
...|.-.||.+.
T Consensus 633 --T~g~SGAel~~l 644 (693)
T KOG0730|consen 633 --TEGYSGAEIVAV 644 (693)
T ss_pred --hccCChHHHHHH
Confidence 222444566554
No 14
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=5e-32 Score=328.91 Aligned_cols=418 Identities=22% Similarity=0.342 Sum_probs=273.6
Q ss_pred cCCCCCccccHHHHHHHHHHHhc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 27 LGKLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 27 ~~~~~~lvG~~~~~~~l~~~l~~-------------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
.-+|+++.|.+++++.+...+.. ..+.++||+||||||||++++++|+.+ +..++.+
T Consensus 174 ~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~i 243 (733)
T TIGR01243 174 KVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFISI 243 (733)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEEE
Confidence 35888999999998888776531 445789999999999999999999988 6788888
Q ss_pred ehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cchhhhhhhhc----cCCceEEEEe
Q psy14500 94 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPEL----SRGELHCIGA 166 (938)
Q Consensus 94 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l----~~~~i~vI~~ 166 (938)
+...+. +++.|+.+..++.+|..+.. ..|+||||||+|.+.+.++.... ..+.+.|...+ +.+.+++|++
T Consensus 244 ~~~~i~--~~~~g~~~~~l~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~a 320 (733)
T TIGR01243 244 NGPEIM--SKYYGESEERLREIFKEAEE-NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIGA 320 (733)
T ss_pred ecHHHh--cccccHHHHHHHHHHHHHHh-cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEee
Confidence 887776 45778888899999999874 44789999999999876543221 23445566555 3567999999
Q ss_pred cChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCC-CHHHHHHHHHhhhhccccCCCchh
Q psy14500 167 TTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEI-TDPAIVAASELSYRYISDRFMPDK 242 (938)
Q Consensus 167 tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i-~~~~l~~~~~~s~~~~~~~~~p~~ 242 (938)
||.++ .+|+++++ ||+. +.++.|+.++|..||+...... .+ ++..+..++..+.+|. +..
T Consensus 321 tn~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~------~l~~d~~l~~la~~t~G~~-----gad 384 (733)
T TIGR01243 321 TNRPD-----ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM------PLAEDVDLDKLAEVTHGFV-----GAD 384 (733)
T ss_pred cCChh-----hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC------CCccccCHHHHHHhCCCCC-----HHH
Confidence 99998 79999998 9986 9999999999999999655432 22 2334677778877766 222
Q ss_pred hhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 243 AIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLI 322 (938)
Q Consensus 243 a~~ll~~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (938)
...++..++.....+. +. ..+.
T Consensus 385 l~~l~~~a~~~al~r~-------------~~-----------~~~~---------------------------------- 406 (733)
T TIGR01243 385 LAALAKEAAMAALRRF-------------IR-----------EGKI---------------------------------- 406 (733)
T ss_pred HHHHHHHHHHHHHHHH-------------hh-----------cccc----------------------------------
Confidence 2333333322111000 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHh
Q psy14500 323 KDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRT 402 (938)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~ 402 (938)
++. .. .++ ........++.+++..++...
T Consensus 407 ------------------------~~~-~~-----~i~---------------------~~~~~~~~v~~~df~~Al~~v 435 (733)
T TIGR01243 407 ------------------------NFE-AE-----EIP---------------------AEVLKELKVTMKDFMEALKMV 435 (733)
T ss_pred ------------------------ccc-cc-----ccc---------------------chhcccccccHHHHHHHHhhc
Confidence 000 00 000 000000112233332222211
Q ss_pred hCCCccccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcC----CCCCCCCceEEEEeCCCCCcHHHHHHHHH
Q psy14500 403 TGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSG----LSDAKRPYGSFMFLGPTGVGKTELCKTLS 478 (938)
Q Consensus 403 ~~~~~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~----~~~~~~~~~~iLl~GppGtGKT~lA~~la 478 (938)
.... +. ....+....-.+++.|++.+++.+...+...... ......+...+||+||||||||++|+++|
T Consensus 436 ~ps~---~~----~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA 508 (733)
T TIGR01243 436 EPSA---IR----EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVA 508 (733)
T ss_pred cccc---cc----hhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHH
Confidence 1000 00 0000001112345778888888887776532100 00011222369999999999999999999
Q ss_pred HHhccCCCceEEeccccccchhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccC------------HH
Q psy14500 479 ACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN------------SD 544 (938)
Q Consensus 479 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~------------~~ 544 (938)
+.+ +.+|+.++++++... |+|+.+. +.++...+...++||||||||.+. ..
T Consensus 509 ~e~---~~~fi~v~~~~l~~~------------~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~ 573 (733)
T TIGR01243 509 TES---GANFIAVRGPEILSK------------WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDR 573 (733)
T ss_pred Hhc---CCCEEEEehHHHhhc------------ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHH
Confidence 998 789999998876542 6665543 445566677778999999999763 24
Q ss_pred HHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEcc
Q psy14500 545 VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFR 622 (938)
Q Consensus 545 ~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~ 622 (938)
+.+.||..|+.- ....++++|+|||.+. .+++.++ +|||.++.++
T Consensus 574 ~~~~lL~~ldg~---------~~~~~v~vI~aTn~~~------------------------~ld~allRpgRfd~~i~v~ 620 (733)
T TIGR01243 574 IVNQLLTEMDGI---------QELSNVVVIAATNRPD------------------------ILDPALLRPGRFDRLILVP 620 (733)
T ss_pred HHHHHHHHhhcc---------cCCCCEEEEEeCCChh------------------------hCCHhhcCCCccceEEEeC
Confidence 678888888741 1235688999999743 3677777 4999999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy14500 623 YLNRKNILSIANIQL 637 (938)
Q Consensus 623 ~l~~e~~~~i~~~~l 637 (938)
+++.++..+|+....
T Consensus 621 ~Pd~~~R~~i~~~~~ 635 (733)
T TIGR01243 621 PPDEEARKEIFKIHT 635 (733)
T ss_pred CcCHHHHHHHHHHHh
Confidence 999999999976443
No 15
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=99.98 E-value=5.3e-32 Score=284.18 Aligned_cols=207 Identities=24% Similarity=0.416 Sum_probs=152.0
Q ss_pred ccccccccchHHHHHHHHHhccc--------CCccccccccccCCCCeeEehhHHHHHhc--CCccEEEcCCChHHHHHH
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKK--------SPEANFIFLGDLINKGPQSLDTLRMVYSM--RNYAKIVLGNHEIHLLDV 739 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~--------~~~~~li~~GD~~drg~~~~~v~~~~~~~--~~~~~~v~GNHe~~~l~~ 739 (938)
+.+||||||+++|.++|++++|. +..+.+||+||++||||+|.+|+++++++ .+++.+|+||||.|++++
T Consensus 4 ~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~~~~~~~l~GNHE~~~l~~ 83 (245)
T PRK13625 4 DIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEKKAAYYVPGNHCNKLYRF 83 (245)
T ss_pred EEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhhCCCEEEEeCccHHHHHHH
Confidence 56899999999999999999885 35689999999999999999999999887 447899999999999999
Q ss_pred Hhccc---cCCccccHHHhhCCC------CHHHHHHHHhcCCceEEe--CCEEEEecccCcCCCHHHHHHHhHHHHHHhh
Q psy14500 740 LININ---KKSKLDTFDDILDAP------DKKKLVSWLRTQPLAIYY--KKYLMIHAGVAKQWTAQQTIKLSHQVEKILR 808 (938)
Q Consensus 740 ~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~l~~lp~~~~~--~~~~~vHAg~~p~~~~~~~~~~~~~~~~~l~ 808 (938)
+.+.. .+++..++.++.... ..+.+.+|++++|+++.. ++++|||||++|.+..... ......+
T Consensus 84 ~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~~~~~~----~~~~~~~- 158 (245)
T PRK13625 84 FLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDYIGRQD----KKVQTFV- 158 (245)
T ss_pred HhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHhcccch----hhhhhHH-
Confidence 86532 233445555543221 246789999999999865 6799999999886311100 0111100
Q ss_pred hccHHHHHHHhcCCC-CCCCCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCCc
Q psy14500 809 TSYWKNLFFKLYNHN-SINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRK 887 (938)
Q Consensus 809 ~~~~~~~~~~~~~~~-~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~ 887 (938)
+++.. ...|.. ......+|.+.+..
T Consensus 159 ----------l~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~g- 184 (245)
T PRK13625 159 ----------LYGDITGEKHPD-------------------------------------------GSPVRRDWAKEYKG- 184 (245)
T ss_pred ----------hhccccCCcCCC-------------------------------------------CCeeeeccchhcCC-
Confidence 11100 000110 00112346554443
Q ss_pred CCCceEEEccCCCcCcccCCCeEEeccccccCCeEEEEEecCCcEEEeeC
Q psy14500 888 TIDITVLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 937 (938)
Q Consensus 888 ~~~~~vv~GH~~~~~~~~~~~~~~lDtG~~~gg~Lta~~l~~~~~~~v~~ 937 (938)
...|||||||+..+...++.++|||||++||+|||++++++++++|++
T Consensus 185 --~~~vV~GHtp~~~~~~~~~~i~IDtGa~~gG~Ltal~l~~~~~~~v~~ 232 (245)
T PRK13625 185 --TAWIVYGHTPVKEPRFVNHTVNIDTGCVFGGRLTALRYPEMETVSVPS 232 (245)
T ss_pred --CcEEEECCCCCccceecCCeEEEECcCccCCEEEEEECCCCcEEEEEC
Confidence 568999999999999889999999999999999999999999999986
No 16
>KOG0736|consensus
Probab=99.97 E-value=6.5e-30 Score=284.67 Aligned_cols=437 Identities=18% Similarity=0.258 Sum_probs=277.6
Q ss_pred CccccHHHHHHHHHHHhcC---------CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14500 32 PVIGRDDEIRRAIQVLQRR---------SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 102 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~~---------~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~ 102 (938)
..-+++..+..+.+++... ..+.+||+|+||||||++++++|.++ +.+++++++..+.+.+
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~s 471 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAES 471 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhcc
Confidence 3345666666677766532 22347999999999999999999999 9999999999998554
Q ss_pred cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc-------CCceEEEEecChhHHHHh
Q psy14500 103 KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-------RGELHCIGATTLNEYRQY 175 (938)
Q Consensus 103 ~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~-------~~~i~vI~~tn~~~~~~~ 175 (938)
.+..+..+...|..++.+ .|+|||+-++|.+..+.+.+....++..+...++ .+.+++|++|+..+
T Consensus 472 --~~~~etkl~~~f~~a~~~-~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~---- 544 (953)
T KOG0736|consen 472 --ASHTETKLQAIFSRARRC-SPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE---- 544 (953)
T ss_pred --cchhHHHHHHHHHHHhhc-CceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccc----
Confidence 466777899999999865 5999999999999865544433344444444443 35789999999988
Q ss_pred hhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCH-HHHHHHHHhhhhccccCCCchhhhhHHHHHHHH
Q psy14500 176 IEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITD-PAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 253 (938)
Q Consensus 176 ~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~-~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~ 253 (938)
.+++.+++-|.. |.++.|+.+||.+||+++..... +.. .-++.++..+.+|. ++....++..+
T Consensus 545 -~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~------~n~~v~~k~~a~~t~gfs-----~~~L~~l~~~~--- 609 (953)
T KOG0736|consen 545 -DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP------LNQDVNLKQLARKTSGFS-----FGDLEALVAHS--- 609 (953)
T ss_pred -cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc------cchHHHHHHHHHhcCCCC-----HHHHHHHhcCc---
Confidence 899999998864 99999999999999999887532 222 22334444444433 11111111000
Q ss_pred HHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 254 IKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIE 333 (938)
Q Consensus 254 ~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (938)
++. ++.+++.
T Consensus 610 ------------------------------------s~~----~~~~i~~------------------------------ 619 (953)
T KOG0736|consen 610 ------------------------------------SLA----AKTRIKN------------------------------ 619 (953)
T ss_pred ------------------------------------hHH----HHHHHHh------------------------------
Confidence 000 0000000
Q ss_pred HHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHH-------HhhCCC
Q psy14500 334 KVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVS-------RTTGIP 406 (938)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~-------~~~~~~ 406 (938)
+.-.|+... ... + ........++.+|+...++ ...|.|
T Consensus 620 --------~~l~g~~~~------------------~~~---~------~~~~~~~~l~~edf~kals~~~~~fs~aiGAP 664 (953)
T KOG0736|consen 620 --------KGLAGGLQE------------------EDE---G------ELCAAGFLLTEEDFDKALSRLQKEFSDAIGAP 664 (953)
T ss_pred --------hcccccchh------------------ccc---c------ccccccceecHHHHHHHHHHHHHhhhhhcCCC
Confidence 000000000 000 0 0000012344444444333 344554
Q ss_pred -ccccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhh---cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhc
Q psy14500 407 -VSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSR---SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIF 482 (938)
Q Consensus 407 -~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~---~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~ 482 (938)
+++..+.+. -|.++++..+...+...- .-+...-+++..+|||||||||||.+|+|+|.++
T Consensus 665 KIPnV~WdDV--------------GGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc- 729 (953)
T KOG0736|consen 665 KIPNVSWDDV--------------GGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC- 729 (953)
T ss_pred CCCccchhcc--------------cCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-
Confidence 455555444 455566666666654310 0011111333469999999999999999999998
Q ss_pred cCCCceEEeccccccchhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccCH-------------HHHH
Q psy14500 483 NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-------------DVFN 547 (938)
Q Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-------------~~~~ 547 (938)
...|..+...++.+. |+|+++. +.+++..+.+.+|||||||+|.+.| .+..
T Consensus 730 --sL~FlSVKGPELLNM------------YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVS 795 (953)
T KOG0736|consen 730 --SLNFLSVKGPELLNM------------YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVS 795 (953)
T ss_pred --eeeEEeecCHHHHHH------------HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHH
Confidence 789999999998875 9998876 6778888999999999999999886 5789
Q ss_pred HHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCC
Q psy14500 548 ILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLN 625 (938)
Q Consensus 548 ~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~ 625 (938)
.||..||. . .++ +..++++|.+||.+. .++|+|+ +|||..+..-+-.
T Consensus 796 QLLAELDg-l-s~~-----~s~~VFViGATNRPD------------------------LLDpALLRPGRFDKLvyvG~~~ 844 (953)
T KOG0736|consen 796 QLLAELDG-L-SDS-----SSQDVFVIGATNRPD------------------------LLDPALLRPGRFDKLVYVGPNE 844 (953)
T ss_pred HHHHHhhc-c-cCC-----CCCceEEEecCCCcc------------------------ccChhhcCCCccceeEEecCCc
Confidence 99999984 1 111 346678888999743 2556666 7999888777765
Q ss_pred H-HHHHHHHHHHHHHHHHHHHccCCeEEEcHHH-HHHHHhhccccccccccccc
Q psy14500 626 R-KNILSIANIQLNILKNKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHG 677 (938)
Q Consensus 626 ~-e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~-~~~L~~~~~~~~~~~~dl~~ 677 (938)
. +...++++..-++ +.+++++ +..+++ ..++++.-.|+..
T Consensus 845 d~esk~~vL~AlTrk-----------FkLdedVdL~eiAk-~cp~~~TGADlYs 886 (953)
T KOG0736|consen 845 DAESKLRVLEALTRK-----------FKLDEDVDLVEIAK-KCPPNMTGADLYS 886 (953)
T ss_pred cHHHHHHHHHHHHHH-----------ccCCCCcCHHHHHh-hCCcCCchhHHHH
Confidence 4 4455554433322 2344433 223333 3455565556653
No 17
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.97 E-value=2.6e-31 Score=274.31 Aligned_cols=194 Identities=28% Similarity=0.448 Sum_probs=138.7
Q ss_pred ccccccccchHHHHHHHHHhccc-------CCccccccccccCCCCeeEehhHHHHHhcC--CccEEEcCCChHHHHHHH
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKK-------SPEANFIFLGDLINKGPQSLDTLRMVYSMR--NYAKIVLGNHEIHLLDVL 740 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~-------~~~~~li~~GD~~drg~~~~~v~~~~~~~~--~~~~~v~GNHe~~~l~~~ 740 (938)
+.+||||||+++|.++|++++++ ++.+.+||+||||||||+|.+|+++++++. .++.+|+||||.|+++++
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~~~~~~l~GNHE~~ll~~~ 81 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAGHALAVMGNHEFNAIAWH 81 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcCCCEEEEEccCcHHHHHhh
Confidence 56899999999999999999886 256899999999999999999999999883 368999999999999987
Q ss_pred hcccc-------CCc------cccHHHhh-CCCCHHHHHHHHhcCCceEEeCCEEEEecccCcCCCHHHHHHHhHHHHHH
Q psy14500 741 ININK-------KSK------LDTFDDIL-DAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQWTAQQTIKLSHQVEKI 806 (938)
Q Consensus 741 ~~~~~-------~~~------~~~~~~~~-~~~~~~~~~~~l~~lp~~~~~~~~~~vHAg~~p~~~~~~~~~~~~~~~~~ 806 (938)
.+... .+. ..++.++. .....+.+++||++||++++.++++|||||+++.+.
T Consensus 82 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~VHAg~~~~l~-------------- 147 (222)
T cd07413 82 TKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDLGGVRVVHACWDETLL-------------- 147 (222)
T ss_pred hCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEECCEEEEECCcCHhhc--------------
Confidence 54211 111 12222221 123357899999999999999999999999763211
Q ss_pred hhhccHHHHHHHhcCCCCCCCCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCC
Q psy14500 807 LRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNR 886 (938)
Q Consensus 807 l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~ 886 (938)
|.+.. .. .....|++..+. ..+....+|+.
T Consensus 148 --------------------~~~~~-----~~----------~~~~~~~~~~~~-----------~~~~~~~~~~~---- 177 (222)
T cd07413 148 --------------------KGPEI-----AL----------PEGHSFVDKDGI-----------VRDNIRVKWWG---- 177 (222)
T ss_pred --------------------cCCCc-----CC----------CCCceeecCCCc-----------cccccchhhcC----
Confidence 11110 00 000122211110 00112233432
Q ss_pred cCCCceEEEccCCCcC--cccCCCeEEeccccccCCeEEEEEecCCc
Q psy14500 887 KTIDITVLFGHWSTLG--LIMKPNIICLDTGCVWGNKLTALCLEDRS 931 (938)
Q Consensus 887 ~~~~~~vv~GH~~~~~--~~~~~~~~~lDtG~~~gg~Lta~~l~~~~ 931 (938)
..|||||||+++ +...+|++||||||++||+|||++++++.
T Consensus 178 ----~~Vv~GHt~~~~~~~~~~~~~i~iDTGA~~~G~Lta~~~~~~~ 220 (222)
T cd07413 178 ----KPVFVGHYWLNGEPAPLNPNVACLDYSAAKGGKLVAYRWDGED 220 (222)
T ss_pred ----CCEEEecCCCCCCCccccCCEEEEecccccCCeeEEEEcCCcc
Confidence 569999999975 88889999999999999999999998753
No 18
>KOG0735|consensus
Probab=99.97 E-value=3e-29 Score=276.61 Aligned_cols=387 Identities=21% Similarity=0.262 Sum_probs=251.6
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEE
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 129 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~ 129 (938)
.+.+|+||+||+|+|||.|++++++++.... -+.+..++|+.+... -...+.+.+..+|.++.. .+|+|++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~------~~hv~~v~Cs~l~~~--~~e~iQk~l~~vfse~~~-~~PSiIv 499 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDL------IAHVEIVSCSTLDGS--SLEKIQKFLNNVFSEALW-YAPSIIV 499 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhcccc------ceEEEEEechhccch--hHHHHHHHHHHHHHHHHh-hCCcEEE
Confidence 4568899999999999999999999985332 456777888777632 245566778888888875 4599999
Q ss_pred EeCccccccCCCCCCccc--hhhhh--------hhhccCC-ceEEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCC
Q psy14500 130 IDELHTMIGTGKVEGSID--AGNML--------KPELSRG-ELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPD 195 (938)
Q Consensus 130 iDEid~l~~~~~~~~~~~--~~~~L--------~~~l~~~-~i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~ 195 (938)
+|++|.|....+.+++++ ..+.| +.+++++ .+.+|++.+..+ .++|.|.+ +|+. +.++.|.
T Consensus 500 LDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-----tl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 500 LDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-----TLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred EcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-----hcChhhcCccceEEEEecCCcc
Confidence 999999998544444433 22222 2233444 568999988877 78888888 7875 8899999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHH
Q psy14500 196 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQL 275 (938)
Q Consensus 196 ~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~~~~p~~l~~~~~~~~~~ 275 (938)
..+|..||+.++.+. ...+....++.++..++||. +.+..-+++.+...+....-++
T Consensus 575 ~~~R~~IL~~~~s~~----~~~~~~~dLd~ls~~TEGy~-----~~DL~ifVeRai~~a~leris~-------------- 631 (952)
T KOG0735|consen 575 VTRRKEILTTIFSKN----LSDITMDDLDFLSVKTEGYL-----ATDLVIFVERAIHEAFLERISN-------------- 631 (952)
T ss_pred hhHHHHHHHHHHHhh----hhhhhhHHHHHHHHhcCCcc-----chhHHHHHHHHHHHHHHHHhcc--------------
Confidence 999999999988762 23455666777888877776 3444444544432221000000
Q ss_pred HHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHhhhhhh
Q psy14500 276 KIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLK 355 (938)
Q Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (938)
..+-+. +
T Consensus 632 --------------~~kllt----------------------------------------k------------------- 638 (952)
T KOG0735|consen 632 --------------GPKLLT----------------------------------------K------------------- 638 (952)
T ss_pred --------------Ccccch----------------------------------------H-------------------
Confidence 000000 0
Q ss_pred hcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCccccchHHHHHHHHHHHHhhccccChHHH
Q psy14500 356 YGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEA 435 (938)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~viGq~~~ 435 (938)
..+++.+..+.+..+. ..+ +...+|+-| .++-|..++
T Consensus 639 ----e~f~ksL~~F~P~aLR------~ik--------------~~k~tgi~w-------------------~digg~~~~ 675 (952)
T KOG0735|consen 639 ----ELFEKSLKDFVPLALR------GIK--------------LVKSTGIRW-------------------EDIGGLFEA 675 (952)
T ss_pred ----HHHHHHHHhcChHHhh------hcc--------------ccccCCCCc-------------------eecccHHHH
Confidence 0011111111111000 000 001122222 233455555
Q ss_pred HHHHHHHHHhhh----cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCC
Q psy14500 436 ISAVSNAIRRSR----SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG 511 (938)
Q Consensus 436 ~~~l~~~l~~~~----~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 511 (938)
++.+.+.+.-.. ...+-|-+-...+||+||||||||.+|.++|... +..|+.+...++.++
T Consensus 676 k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~~~fisvKGPElL~K------------ 740 (952)
T KOG0735|consen 676 KKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---NLRFISVKGPELLSK------------ 740 (952)
T ss_pred HHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---CeeEEEecCHHHHHH------------
Confidence 555555553221 0111122333469999999999999999999988 789999999988765
Q ss_pred Ccccccc--chhHHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCceeecCCeEEEEecC
Q psy14500 512 YIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 578 (938)
Q Consensus 512 ~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 578 (938)
|+|.+++ +.++...+.+.+|||||||+|.+.| .+.|.||+.||.-. ....++++++|.
T Consensus 741 yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E---------gl~GV~i~aaTs 811 (952)
T KOG0735|consen 741 YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE---------GLDGVYILAATS 811 (952)
T ss_pred HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc---------ccceEEEEEecC
Confidence 7777665 5677777888899999999998875 68999999998511 123455555665
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
.+. .++|+++ +|+|..|..+.+++.+..+|++..-
T Consensus 812 Rpd------------------------liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 812 RPD------------------------LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred Ccc------------------------ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 432 2556666 7999999999999999999965533
No 19
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.8e-28 Score=272.19 Aligned_cols=410 Identities=22% Similarity=0.338 Sum_probs=307.9
Q ss_pred HHHHHHHhhhhhhhc--ccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHHHhhcCc------hhHHHHHH
Q psy14500 198 ETISILRGLQKKYEV--HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSK------PEIMDKLE 269 (938)
Q Consensus 198 e~~~il~~~~~~~~~--~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~~~~------p~~l~~~~ 269 (938)
+...+.+.+...+.. ..+..++++.+..+... ...-.+.+.+++......... ...-..++
T Consensus 127 ~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~~i-----------~~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rle 195 (782)
T COG0466 127 EIEALVRSILSEFEEYAKLNKKIPPEELQSLNSI-----------DDPGKLADTIAAHLPLKLEEKQEILETLDVKERLE 195 (782)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCHHHHHHHhcc-----------cchHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHHH
Confidence 344555555444332 12233677776655532 122245555555543322222 22347788
Q ss_pred HHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchH
Q psy14500 270 RRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQ 349 (938)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (938)
..+..+..+++.+..++...++ |++++++.|++|...||.+.+++++-.+.+. ..+.++++++++... .++
T Consensus 196 k~l~~l~~ei~~~~~ek~I~~k-----Vk~~meK~QREyyL~EQlKaIqkELG~~~d~-~~e~~~~~~kie~~~---~p~ 266 (782)
T COG0466 196 KLLDLLEKEIDLLQLEKRIRKK-----VKEQMEKSQREYYLREQLKAIQKELGEDDDD-KDEVEELREKIEKLK---LPK 266 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCccc-hhHHHHHHHHHhhcC---CCH
Confidence 8888899999988888776554 9999999999999999999999998665432 367788888888554 566
Q ss_pred hhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCccccchHHHHHHHHHHHHhhccc
Q psy14500 350 TVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRV 429 (938)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~v 429 (938)
.+.+.+..++.+|+. +++.|++++++++ ++.+++.+||.+... +...+.+.+..|+++-
T Consensus 267 evk~k~~~El~kL~~-----------m~~~SaE~~ViRn---------YlDwll~lPW~~~sk-~~~Dl~~a~~iLd~dH 325 (782)
T COG0466 267 EAKEKAEKELKKLET-----------MSPMSAEATVIRN---------YLDWLLDLPWGKRSK-DKLDLKKAEKILDKDH 325 (782)
T ss_pred HHHHHHHHHHHHHhc-----------CCCCCchHHHHHH---------HHHHHHhCCCccccc-hhhhHHHHHHHhcccc
Confidence 777776767766665 5556666666655 888999999987655 4456888999999999
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCC
Q psy14500 430 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAP 509 (938)
Q Consensus 430 iGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 509 (938)
.|.+.+++.+.+.+...... ..-++| .++|+||||+|||+|++.||+.+ +.+|+++.+....+. +++-|+.
T Consensus 326 YGLekVKeRIlEyLAV~~l~-~~~kGp--ILcLVGPPGVGKTSLgkSIA~al---~RkfvR~sLGGvrDE---AEIRGHR 396 (782)
T COG0466 326 YGLEKVKERILEYLAVQKLT-KKLKGP--ILCLVGPPGVGKTSLGKSIAKAL---GRKFVRISLGGVRDE---AEIRGHR 396 (782)
T ss_pred cCchhHHHHHHHHHHHHHHh-ccCCCc--EEEEECCCCCCchhHHHHHHHHh---CCCEEEEecCccccH---HHhcccc
Confidence 99999999999988654432 122233 58899999999999999999999 789999999887764 5667999
Q ss_pred CCCccccccchhHHHH-HhCCCEEEEEccccccCHHH----HHHHHHhhc---CCceecCC-CceeecCCeEEEEecCCC
Q psy14500 510 PGYIGYEEGGYLTEIV-RRKPYSLILLDEIEKANSDV----FNILLQILD---DGRLTDNR-GRTINFRNTIIVMTSNLG 580 (938)
Q Consensus 510 ~~~~g~~~~~~l~~~~-~~~~~~vl~lDEid~~~~~~----~~~Ll~~le---~g~~~~~~-g~~~~~~~~iiI~ttn~~ 580 (938)
..|+|.-+++.+.... ....+.+++||||||++.+. ..+||.+|| +..|.|.. ....+.+++.||+|+|.
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANs- 475 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANS- 475 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCc-
Confidence 9999999998877665 33447799999999998765 589999997 45666655 56678899999999996
Q ss_pred chhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccC---CeEEEcHHH
Q psy14500 581 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMN---MDLKISKAA 657 (938)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~---~~l~~~~~~ 657 (938)
...++.+|++|+ .+|.+..+++++..+|+..+| +-+.++..| -++.+++++
T Consensus 476 -----------------------l~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L--iPk~~~~~gL~~~el~i~d~a 529 (782)
T COG0466 476 -----------------------LDTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL--IPKQLKEHGLKKGELTITDEA 529 (782)
T ss_pred -----------------------cccCChHHhcce-eeeeecCCChHHHHHHHHHhc--chHHHHHcCCCccceeecHHH
Confidence 234788999999 699999999999999999887 334444444 458999999
Q ss_pred HHHHHhhcccccccccccccchHHHHHH
Q psy14500 658 LKKISNIGFDLIYGARDVHGCKKSLSIL 685 (938)
Q Consensus 658 ~~~L~~~~~~~~~~~~dl~~~~~~l~~~ 685 (938)
+..|.+ .|...-|+|.|.+.+..+.|-
T Consensus 530 i~~iI~-~YTREAGVR~LeR~i~ki~RK 556 (782)
T COG0466 530 IKDIIR-YYTREAGVRNLEREIAKICRK 556 (782)
T ss_pred HHHHHH-HHhHhhhhhHHHHHHHHHHHH
Confidence 999998 688999999999995554443
No 20
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.96 E-value=3.2e-29 Score=262.24 Aligned_cols=208 Identities=28% Similarity=0.399 Sum_probs=148.7
Q ss_pred ccccccccchHHHHHHHHHhcccC---------CccccccccccCCCCeeEehhHHHHHhc--CCccEEEcCCChHHHHH
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKS---------PEANFIFLGDLINKGPQSLDTLRMVYSM--RNYAKIVLGNHEIHLLD 738 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~---------~~~~li~~GD~~drg~~~~~v~~~~~~~--~~~~~~v~GNHe~~~l~ 738 (938)
..++|||||+++|.++|++++|.. ..+++||+||++||||.+.+|+++++++ +.++.+|+||||.++++
T Consensus 4 ~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~~~~~~v~GNHE~~l~~ 83 (234)
T cd07423 4 DIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAAGAALCVPGNHDNKLYR 83 (234)
T ss_pred EEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhCCcEEEEECCcHHHHHH
Confidence 458999999999999999998753 3579999999999999999999999987 34688999999999999
Q ss_pred HHhcccc---CCccccHHHhh--CCCCHHHHHHHHhcCCceEEe--CCEEEEecccCcCCCHHHHHHHhHHHHHHhhhcc
Q psy14500 739 VLININK---KSKLDTFDDIL--DAPDKKKLVSWLRTQPLAIYY--KKYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSY 811 (938)
Q Consensus 739 ~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~l~~lp~~~~~--~~~~~vHAg~~p~~~~~~~~~~~~~~~~~l~~~~ 811 (938)
++.+... .+...++.++. .....+++++||++||++++. ++++|||||++|.+..... .. +.
T Consensus 84 ~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~~~~~~~----~~----~~--- 152 (234)
T cd07423 84 KLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEEMIGRDS----KR----VR--- 152 (234)
T ss_pred HhcCCCccccCcccchHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChHhccccc----hh----he---
Confidence 8865322 22234444432 222357789999999999875 4799999998874321100 00 00
Q ss_pred HHHHHHHhcCCCCCCCCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCCcCCCc
Q psy14500 812 WKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDI 891 (938)
Q Consensus 812 ~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~ 891 (938)
....|.+.. . ..+ ........+|...+. +..
T Consensus 153 -----------~~~~~~~~~-------------------~--~~~--------------~~~~~~~~~~~~~~~---~~~ 183 (234)
T cd07423 153 -----------SFALYGDTT-------------------G--ETD--------------EFGLPVRRDWAKEYR---GDA 183 (234)
T ss_pred -----------eeeeccccc-------------------C--CcC--------------CCCCccchhhHhhCC---CCe
Confidence 000011000 0 000 000011234554443 356
Q ss_pred eEEEccCCCcCcccCCCeEEeccccccCCeEEEEEecCCcEEEeeC
Q psy14500 892 TVLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 937 (938)
Q Consensus 892 ~vv~GH~~~~~~~~~~~~~~lDtG~~~gg~Lta~~l~~~~~~~v~~ 937 (938)
+||||||+++.+...++.++|||||+|||+|||+++++++++||+.
T Consensus 184 ~vv~GHt~~~~~~~~~~~i~IDtGav~gG~Lt~l~~~~~~~~~~~~ 229 (234)
T cd07423 184 LVVYGHTPVPEPRWLNNTINIDTGCVFGGKLTALRYPEREIVSVPA 229 (234)
T ss_pred EEEECCCCCccceEeCCEEEEECCCCCCCcceEEECCCCcEEEeec
Confidence 8999999999998899999999999999999999999999999975
No 21
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.96 E-value=1.7e-27 Score=262.75 Aligned_cols=260 Identities=25% Similarity=0.392 Sum_probs=202.0
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCC----CC-----CCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSD----AK-----RPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 488 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~----~~-----~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~ 488 (938)
+.++++.|++.|+||+++++.+..++..+..++.. +. .+.+++||+||||||||++|++||..+ +.+|
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~pf 144 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVPF 144 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCCe
Confidence 56788899999999999999999988554443322 11 123589999999999999999999988 6788
Q ss_pred EEeccccccchhhhhhhcCCCCCCccccccchhHHHHH-------hCCCEEEEEccccccCH--------------HHHH
Q psy14500 489 IRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKANS--------------DVFN 547 (938)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~lDEid~~~~--------------~~~~ 547 (938)
..++++.+. +++|+|.+....+...+. .+.++||||||||++++ ++|+
T Consensus 145 ~~~da~~L~-----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 145 AIADATTLT-----------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQ 213 (413)
T ss_pred EEechhhcc-----------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHH
Confidence 888876653 356888876655555443 34568999999999987 6999
Q ss_pred HHHHhhcCCceec---CCCceeecCCeEEEEecCC---------Cchhhhhh--------hcch--------HHHHHHHH
Q psy14500 548 ILLQILDDGRLTD---NRGRTINFRNTIIVMTSNL---------GSDKIKEM--------EKGD--------KEIIKLAV 599 (938)
Q Consensus 548 ~Ll~~le~g~~~~---~~g~~~~~~~~iiI~ttn~---------~~~~~~~~--------~~~~--------~~~~~~~~ 599 (938)
.||++|| |.+++ .+|+.+++.++++|+|||. |.+.+.+. +..+ ...++...
T Consensus 214 ~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 214 ALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 9999995 88875 5689999999999999998 44433221 0000 01122222
Q ss_pred H-HHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHH----HHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccc
Q psy14500 600 M-NEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ----LNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARD 674 (938)
Q Consensus 600 ~-~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~----l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~d 674 (938)
. +..+..|.|+|++|+|.+++|.||+.+++.+|+... +.++.+.+...++++.++++++++|++.+|++.+|+|.
T Consensus 293 ~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~ 372 (413)
T TIGR00382 293 PEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARG 372 (413)
T ss_pred HHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchH
Confidence 2 334556999999999999999999999999999975 55556666777999999999999999999999999999
Q ss_pred cccchHHHHHHHHHhcccCCc
Q psy14500 675 VHGCKKSLSILLKKIHKKSPE 695 (938)
Q Consensus 675 l~~~~~~l~~~l~~~~~~~~~ 695 (938)
|++. +++.+...-|+-|.
T Consensus 373 Lr~i---ie~~l~~~m~e~p~ 390 (413)
T TIGR00382 373 LRSI---VEGLLLDVMFDLPS 390 (413)
T ss_pred HHHH---HHHhhHHHHhhCCC
Confidence 9999 99998877775543
No 22
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.95 E-value=2e-28 Score=252.85 Aligned_cols=200 Identities=26% Similarity=0.368 Sum_probs=140.1
Q ss_pred HHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHH
Q psy14500 658 LKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLL 737 (938)
Q Consensus 658 ~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l 737 (938)
.+.+....+...+.++|||||+++|.++|+++++.+..|+++++||++||||.|.+|++++++ .++.+|+||||+|++
T Consensus 8 ~~~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~--~~~~~v~GNHE~~~l 85 (218)
T PRK11439 8 YQRIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEE--HWVRAVRGNHEQMAL 85 (218)
T ss_pred eecccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHc--CCceEeeCchHHHHH
Confidence 334445566677999999999999999999999877789999999999999999999999975 468899999999999
Q ss_pred HHHhcccc-----CCccccHHHhhC--CCCHHHHHHHHhcCCceEEe----CCEEEEecccCcCCCHHHHHHHhHHHHHH
Q psy14500 738 DVLININK-----KSKLDTFDDILD--APDKKKLVSWLRTQPLAIYY----KKYLMIHAGVAKQWTAQQTIKLSHQVEKI 806 (938)
Q Consensus 738 ~~~~~~~~-----~~~~~~~~~~~~--~~~~~~~~~~l~~lp~~~~~----~~~~~vHAg~~p~~~~~~~~~~~~~~~~~ 806 (938)
+++.+... +++ ..+..... .....++++||++||++++. ++++|||||++..+. + + +.+
T Consensus 86 ~~~~~~~~~~w~~~gg-~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~~-~----~--~~~-- 155 (218)
T PRK11439 86 DALASQQMSLWLMNGG-DWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADVY-E----W--QKD-- 155 (218)
T ss_pred HHHHCCccchhhhCCC-hhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCch-h----h--hcc--
Confidence 98865321 111 11211111 11235678999999999873 469999999843211 0 0 000
Q ss_pred hhhccHHHHHHHhcCCCCCCCCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCC
Q psy14500 807 LRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNR 886 (938)
Q Consensus 807 l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~ 886 (938)
....+..|.+ .+++.. . ++ ..
T Consensus 156 -------------~~~~~~~w~r----------------------~~~~~~-------------------~-~~----~~ 176 (218)
T PRK11439 156 -------------VDLHQVLWSR----------------------SRLGER-------------------Q-KG----QG 176 (218)
T ss_pred -------------CCccceEEcC----------------------hhhhhc-------------------c-cc----cc
Confidence 0001122332 122110 0 00 01
Q ss_pred cCCCceEEEccCCCcCcccCCCeEEeccccccCCeEEEEEec
Q psy14500 887 KTIDITVLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLE 928 (938)
Q Consensus 887 ~~~~~~vv~GH~~~~~~~~~~~~~~lDtG~~~gg~Lta~~l~ 928 (938)
..+...|||||||++.+...++.++|||||||||+|||++++
T Consensus 177 ~~~~~~vv~GHT~~~~~~~~~~~i~IDtGav~gg~Lt~l~~~ 218 (218)
T PRK11439 177 ITGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ 218 (218)
T ss_pred ccCCCEEEECCccCCCccccCCEEEEECCCCCCCeeEEEEcC
Confidence 112347999999999999899999999999999999999874
No 23
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.95 E-value=3.4e-25 Score=269.43 Aligned_cols=357 Identities=22% Similarity=0.320 Sum_probs=268.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 262 PEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINK 341 (938)
Q Consensus 262 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (938)
++....++..+..+..+++.++.+.+..++ |++++++.|++|...||.+.+++++-.. ...+++++.++++++.
T Consensus 185 ~d~~~RL~~l~~lL~~ele~l~l~~~I~~~-----v~~~~~~~qr~~~Lreqlk~i~~eLg~~-~~~~~~~~~~~~k~~~ 258 (775)
T TIGR00763 185 VNIEKRLKKALELLKKELELLKLQNKITKK-----VEEKMEKTQREYYLREQLKAIKKELGIE-KDDKDELEKLKEKLEE 258 (775)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CCchhHHHHHHHHHHh
Confidence 344567777888888888888888777554 9999999999999999999999887432 3344566888888877
Q ss_pred hhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCccccchHHHHHHHHH
Q psy14500 342 ATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNI 421 (938)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l 421 (938)
.. -++.+.+....++..+++ +++.++++..+ ..++.+++++||.+.... ...+..+
T Consensus 259 ~~---~~~~~~~~~~~e~~~~~~-----------~~~~~~~~~~~---------~~yl~~~~~ip~~~~~~~-~~~~~~~ 314 (775)
T TIGR00763 259 LK---LPEEVKKVIEKELTKLSL-----------LEPSSSEFTVT---------RNYLDWLTDLPWGKYSKE-NLDLKRA 314 (775)
T ss_pred cC---CCHHHHHHHHHHHHHHHc-----------CCCCCchHHHH---------HHHHHHHHCCCCcccccc-hhhHHHH
Confidence 66 455555555554444443 33444444443 558889999999986665 5668889
Q ss_pred HHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhh
Q psy14500 422 ENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS 501 (938)
Q Consensus 422 ~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~ 501 (938)
++.|.+.++||+.+++.+...+...... ..+.+ .+++|+||||||||++|++||+.+ +.++..++++...+
T Consensus 315 ~~~l~~~~~G~~~~k~~i~~~~~~~~~~-~~~~~--~~lll~GppG~GKT~lAk~iA~~l---~~~~~~i~~~~~~~--- 385 (775)
T TIGR00763 315 KEILDEDHYGLKKVKERILEYLAVQKLR-GKMKG--PILCLVGPPGVGKTSLGKSIAKAL---NRKFVRFSLGGVRD--- 385 (775)
T ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhh-cCCCC--ceEEEECCCCCCHHHHHHHHHHHh---cCCeEEEeCCCccc---
Confidence 9999999999999999999877544321 11222 269999999999999999999999 67899998876544
Q ss_pred hhhhcCCCCCCccccccchhHHHHHh--CCCEEEEEccccccCHHH----HHHHHHhhcC---CceecCC-CceeecCCe
Q psy14500 502 ISRLIGAPPGYIGYEEGGYLTEIVRR--KPYSLILLDEIEKANSDV----FNILLQILDD---GRLTDNR-GRTINFRNT 571 (938)
Q Consensus 502 ~~~l~g~~~~~~g~~~~~~l~~~~~~--~~~~vl~lDEid~~~~~~----~~~Ll~~le~---g~~~~~~-g~~~~~~~~ 571 (938)
...+.|+...|+|...+... ..+.. ..+.||||||||++++.. .++|+++|+. +.+.+.. +..++++++
T Consensus 386 ~~~i~g~~~~~~g~~~g~i~-~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 386 EAEIRGHRRTYVGAMPGRII-QGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred HHHHcCCCCceeCCCCchHH-HHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 34455777778887766443 33322 234699999999997744 5899999984 5666654 667788999
Q ss_pred EEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCC--
Q psy14500 572 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNM-- 649 (938)
Q Consensus 572 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~-- 649 (938)
+||+|||.. ..++++|++|| .+|.|++++.++..+|+..++.. +.++..++
T Consensus 465 ~~I~TtN~~------------------------~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~--~~~~~~~l~~ 517 (775)
T TIGR00763 465 IFIATANSI------------------------DTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIP--KALEDHGLKP 517 (775)
T ss_pred EEEEecCCc------------------------hhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHH--HHHHHcCCCc
Confidence 999999962 24789999999 58999999999999999887743 33333333
Q ss_pred -eEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHh
Q psy14500 650 -DLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKI 689 (938)
Q Consensus 650 -~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~ 689 (938)
.+.++++++.+|++ .|...+|+|+|... +.+++.+.
T Consensus 518 ~~~~~~~~~l~~i~~-~~~~e~g~R~l~r~---i~~~~~~~ 554 (775)
T TIGR00763 518 DELKITDEALLLLIK-YYTREAGVRNLERQ---IEKICRKA 554 (775)
T ss_pred ceEEECHHHHHHHHH-hcChhcCChHHHHH---HHHHHHHH
Confidence 58899999999998 79999999999998 66655443
No 24
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.95 E-value=1.7e-25 Score=268.29 Aligned_cols=357 Identities=20% Similarity=0.290 Sum_probs=270.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 262 PEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINK 341 (938)
Q Consensus 262 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (938)
++....++..+..+..+++.++.+.+..++ |++++++.|++|...||.+.+++++-.. ...+.+.+++++++..
T Consensus 187 ~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~-----v~~~~~k~q~e~~lreq~~~i~~elg~~-~~~~~~~~~~~~~~~~ 260 (784)
T PRK10787 187 SDVNERLEYLMAMMESEIDLLQVEKRIRNR-----VKKQMEKSQREYYLNEQMKAIQKELGEM-DDAPDENEALKRKIDA 260 (784)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhhhcchhhhhhhcccccCC-CcchhHHHHHHHHHHh
Confidence 344567777778888888888888776554 9999999999999999999999987432 2334567888888766
Q ss_pred hhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCccccchHHHHHHHHH
Q psy14500 342 ATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNI 421 (938)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l 421 (938)
.. -++.+.+....++..+++ +++.++++.+++. ++.+.+.+||.+.... ...+.+.
T Consensus 261 ~~---~~~~~~~~~~~e~~~~~~-----------~~~~~~e~~~~~~---------yl~~~~~~pw~~~~~~-~~~~~~~ 316 (784)
T PRK10787 261 AK---MPKEAKEKAEAELQKLKM-----------MSPMSAEATVVRG---------YIDWMVQVPWNARSKV-KKDLRQA 316 (784)
T ss_pred cC---CCHHHHHHHHHHHHHHHh-----------CCCCCchHHHHHH---------HHHHHHhCCCCCCCcc-cccHHHH
Confidence 54 445555555555555444 4455556655544 8899999999886554 4568889
Q ss_pred HHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhh
Q psy14500 422 ENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS 501 (938)
Q Consensus 422 ~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~ 501 (938)
++.|.+..+|++.+++.+...+...... ..... ..++|+||||||||++|+.+|+.+ +.++.+++++...+
T Consensus 317 ~~~l~~~~~g~~~vK~~i~~~l~~~~~~-~~~~g--~~i~l~GppG~GKTtl~~~ia~~l---~~~~~~i~~~~~~d--- 387 (784)
T PRK10787 317 QEILDTDHYGLERVKDRILEYLAVQSRV-NKIKG--PILCLVGPPGVGKTSLGQSIAKAT---GRKYVRMALGGVRD--- 387 (784)
T ss_pred HHHhhhhccCHHHHHHHHHHHHHHHHhc-ccCCC--ceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEcCCCCC---
Confidence 9999999999999999999877643321 11222 269999999999999999999998 67888888776544
Q ss_pred hhhhcCCCCCCccccccchhHHHHHh-CCCEEEEEccccccCHHH----HHHHHHhhcCC---ceecCC-CceeecCCeE
Q psy14500 502 ISRLIGAPPGYIGYEEGGYLTEIVRR-KPYSLILLDEIEKANSDV----FNILLQILDDG---RLTDNR-GRTINFRNTI 572 (938)
Q Consensus 502 ~~~l~g~~~~~~g~~~~~~l~~~~~~-~~~~vl~lDEid~~~~~~----~~~Ll~~le~g---~~~~~~-g~~~~~~~~i 572 (938)
...+.|+...|.|...++.+...... ..+.|++|||+|++++.. +++|+++++.+ .+.|.. ...++.++++
T Consensus 388 ~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 388 EAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred HHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 34566777778887776544333322 246799999999999876 59999999864 445544 3456789999
Q ss_pred EEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHH-HHHHHHHccCCeE
Q psy14500 573 IVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLN-ILKNKLLKMNMDL 651 (938)
Q Consensus 573 iI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~-~~~~~~~~~~~~l 651 (938)
||+|+|.- .++++|++|+ .+|+|.+++.+++.+|+.+++. +..++....+..+
T Consensus 468 ~i~TaN~~-------------------------~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l 521 (784)
T PRK10787 468 FVATSNSM-------------------------NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGEL 521 (784)
T ss_pred EEEcCCCC-------------------------CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeE
Confidence 99999851 3789999999 5999999999999999999885 3444444445679
Q ss_pred EEcHHHHHHHHhhcccccccccccccchHHHHHHHH
Q psy14500 652 KISKAALKKISNIGFDLIYGARDVHGCKKSLSILLK 687 (938)
Q Consensus 652 ~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~ 687 (938)
.++++++++|++ +|.+.+|+|++.+. +.++++
T Consensus 522 ~i~~~ai~~ii~-~yt~e~GaR~LeR~---I~~i~r 553 (784)
T PRK10787 522 TVDDSAIIGIIR-YYTREAGVRSLERE---ISKLCR 553 (784)
T ss_pred EECHHHHHHHHH-hCCcccCCcHHHHH---HHHHHH
Confidence 999999999997 89999999999999 666553
No 25
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.95 E-value=1.9e-26 Score=256.76 Aligned_cols=259 Identities=25% Similarity=0.358 Sum_probs=195.9
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhhhcCC----C---CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGL----S---DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 490 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~----~---~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~ 490 (938)
+.++...|++.|+||+.+++.+..++......+ . ....+..++||+||||||||++|++||..+ +.+|+.
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~ 138 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFAI 138 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCcee
Confidence 556788899999999999999988874332211 1 112344689999999999999999999988 789999
Q ss_pred eccccccchhhhhhhcCCCCCCccccccchhHHH-------HHhCCCEEEEEccccccCH--------------HHHHHH
Q psy14500 491 IDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEI-------VRRKPYSLILLDEIEKANS--------------DVFNIL 549 (938)
Q Consensus 491 ~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~-------~~~~~~~vl~lDEid~~~~--------------~~~~~L 549 (938)
++++.+.. .+|+|.+....+... +..+.++||||||||++++ .+|+.|
T Consensus 139 id~~~l~~-----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~L 207 (412)
T PRK05342 139 ADATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQAL 207 (412)
T ss_pred cchhhccc-----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHH
Confidence 99987653 468887665554443 2346789999999999975 499999
Q ss_pred HHhhcCCce--ecCCCceeecCCeEEEEecCC---------Cchhhhhh--------hcch----H-----HHHHHHH--
Q psy14500 550 LQILDDGRL--TDNRGRTINFRNTIIVMTSNL---------GSDKIKEM--------EKGD----K-----EIIKLAV-- 599 (938)
Q Consensus 550 l~~le~g~~--~~~~g~~~~~~~~iiI~ttn~---------~~~~~~~~--------~~~~----~-----~~~~~~~-- 599 (938)
|++||.+.. ++.+|+..++.+.++|.|+|. +.+.+.+. +..+ . ..+...+
T Consensus 208 L~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~ 287 (412)
T PRK05342 208 LKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEP 287 (412)
T ss_pred HHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCH
Confidence 999985433 345677777888888888887 33322211 0000 0 1111222
Q ss_pred HHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH----HHHHHHHHHHHccCCeEEEcHHHHHHHHhhccccccccccc
Q psy14500 600 MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDV 675 (938)
Q Consensus 600 ~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl 675 (938)
.+.....|.|+|++|+|.++.|.||+++++.+|+. ..+.++.+.+...++.+.++++++++|++.+|++.+|+|.|
T Consensus 288 ~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~L 367 (412)
T PRK05342 288 EDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGL 367 (412)
T ss_pred HHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchH
Confidence 23345568999999999999999999999999998 46666777788889999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhcccC
Q psy14500 676 HGCKKSLSILLKKIHKKS 693 (938)
Q Consensus 676 ~~~~~~l~~~l~~~~~~~ 693 (938)
++. +++.+...-|+-
T Consensus 368 rri---ie~~l~~~~~~~ 382 (412)
T PRK05342 368 RSI---LEEILLDVMFEL 382 (412)
T ss_pred HHH---HHHHhHHHHHhc
Confidence 999 888887666643
No 26
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.94 E-value=3.4e-27 Score=243.32 Aligned_cols=204 Identities=21% Similarity=0.271 Sum_probs=144.2
Q ss_pred cccccccccchHHHHHHHHHhccc-----CCccccccccccCCCCeeEehhHHHHHhcCC-----ccEEEcCCChHHHHH
Q psy14500 669 IYGARDVHGCKKSLSILLKKIHKK-----SPEANFIFLGDLINKGPQSLDTLRMVYSMRN-----YAKIVLGNHEIHLLD 738 (938)
Q Consensus 669 ~~~~~dl~~~~~~l~~~l~~~~~~-----~~~~~li~~GD~~drg~~~~~v~~~~~~~~~-----~~~~v~GNHe~~~l~ 738 (938)
.|.++||||++++|.++++.+..+ ...+.+||+|||+||||++.+|+++++++.. .+.+|+||||.|++.
T Consensus 4 iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l~ 83 (304)
T cd07421 4 VICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFAA 83 (304)
T ss_pred EEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHHh
Confidence 478999999999999999877643 1345799999999999999999999998742 468999999999999
Q ss_pred HHhcc-cc----------------------------------------------------------CCccccHHHh----
Q psy14500 739 VLINI-NK----------------------------------------------------------KSKLDTFDDI---- 755 (938)
Q Consensus 739 ~~~~~-~~----------------------------------------------------------~~~~~~~~~~---- 755 (938)
++... .. .++..|+.++
T Consensus 84 fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~~ 163 (304)
T cd07421 84 FLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVPH 163 (304)
T ss_pred HhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCCc
Confidence 98751 11 0012333332
Q ss_pred ----hCCCCHHHHHHHHhcCCceEEeCCE-------------EEEecccCcCCCHHHHHHHhHHHHHHhhhccHHHHHHH
Q psy14500 756 ----LDAPDKKKLVSWLRTQPLAIYYKKY-------------LMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFK 818 (938)
Q Consensus 756 ----~~~~~~~~~~~~l~~lp~~~~~~~~-------------~~vHAg~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 818 (938)
+....+++|.+||++||++++.+++ +|||||+.|..+.++ |.+. |....+.
T Consensus 164 ~~~~l~~avP~~H~~fl~~l~~~~~~~~~~~~~~~g~~~~~lifVHAGlrPg~pLe~------Q~~~-L~~~d~~----- 231 (304)
T cd07421 164 GSSDLIKAVPEEHKKFLRNLVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKSNSVEE------QLKL-LRTKDTS----- 231 (304)
T ss_pred chHHHHHhCCHHHHHHHHhCCceEEeCcccccccccccccceEEEEcccCCCCChHH------hhhh-hhccccc-----
Confidence 1223478999999999999999988 999999999766553 3322 1100000
Q ss_pred hcCCCCCCCCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCCcCCCceEEEccC
Q psy14500 819 LYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHW 898 (938)
Q Consensus 819 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~ 898 (938)
....+..|. |..||+.... -...+..||+|||
T Consensus 232 -~p~~~~l~~----------------------R~~f~~~~~~-------------------------~~~~~~~VVhGHt 263 (304)
T cd07421 232 -IPKIAPLSG----------------------RKNVWNIPQE-------------------------LADKKTIVVSGHH 263 (304)
T ss_pred -ccccccccc----------------------chhhhcCccc-------------------------ccCCCeEEEECCC
Confidence 001122222 4444442111 0122578999999
Q ss_pred CCcCcccCCCeEEeccccccCCeEEEE-EecCCcEEE
Q psy14500 899 STLGLIMKPNIICLDTGCVWGNKLTAL-CLEDRSIIQ 934 (938)
Q Consensus 899 ~~~~~~~~~~~~~lDtG~~~gg~Lta~-~l~~~~~~~ 934 (938)
..+.+.+++++|||||+++|+|||+ +||+.+++.
T Consensus 264 --~~~~~~~~Ri~iDtGa~~~~~l~aa~vlp~~~~~~ 298 (304)
T cd07421 264 --GKLHIDGLRLIIDEGGGFDDRPIAAIVLPSKEIIR 298 (304)
T ss_pred --CCceecCCEEEEECCCCcCCceeEEEEeccceeEe
Confidence 5689999999999999999986655 579988875
No 27
>KOG0741|consensus
Probab=99.94 E-value=1.8e-25 Score=239.21 Aligned_cols=169 Identities=22% Similarity=0.321 Sum_probs=126.0
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhc------
Q psy14500 49 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN------ 122 (938)
Q Consensus 49 ~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~------ 122 (938)
-....++|||||||||||.+||.|.+.+... .| . .++-..+. .+|+|+.|++++.+|..|.+.
T Consensus 253 i~HVKGiLLyGPPGTGKTLiARqIGkMLNAr-eP------K--IVNGPeIL--~KYVGeSE~NvR~LFaDAEeE~r~~g~ 321 (744)
T KOG0741|consen 253 IKHVKGILLYGPPGTGKTLIARQIGKMLNAR-EP------K--IVNGPEIL--NKYVGESEENVRKLFADAEEEQRRLGA 321 (744)
T ss_pred ccceeeEEEECCCCCChhHHHHHHHHHhcCC-CC------c--ccCcHHHH--HHhhcccHHHHHHHHHhHHHHHHhhCc
Confidence 4555678999999999999999999988332 12 1 23434444 689999999999999988621
Q ss_pred -CCCeEEEEeCccccccCCCCCC-----ccchhhhhhhhcc----CCceEEEEecChhHHHHhhhcCHHHHc--ccce-E
Q psy14500 123 -QKDIIIFIDELHTMIGTGKVEG-----SIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-I 189 (938)
Q Consensus 123 -~~~~iL~iDEid~l~~~~~~~~-----~~~~~~~L~~~l~----~~~i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i 189 (938)
.+=+|+++||+|.+++.+.+.+ ...+.|.|+.-|. -++|.+|+.||+.+ .+|+||+| ||.+ +
T Consensus 322 ~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~D-----lIDEALLRPGRlEVqm 396 (744)
T KOG0741|consen 322 NSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKD-----LIDEALLRPGRLEVQM 396 (744)
T ss_pred cCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchh-----hHHHHhcCCCceEEEE
Confidence 2237999999999998776532 2346677766663 36899999999999 79999999 9997 9
Q ss_pred EeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 190 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 190 ~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
++..|+++-|.+|++-+.++.+.+ +.--++-.+..++.++..|-
T Consensus 397 EIsLPDE~gRlQIl~IHT~rMre~-~~l~~dVdl~elA~lTKNfS 440 (744)
T KOG0741|consen 397 EISLPDEKGRLQILKIHTKRMREN-NKLSADVDLKELAALTKNFS 440 (744)
T ss_pred EEeCCCccCceEEEEhhhhhhhhc-CCCCCCcCHHHHHHHhcCCc
Confidence 999999999999998777765432 21112334566777766554
No 28
>KOG2004|consensus
Probab=99.93 E-value=3.1e-24 Score=237.84 Aligned_cols=354 Identities=21% Similarity=0.305 Sum_probs=275.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy14500 266 DKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRK 345 (938)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (938)
..++..+..+..+++..+.+.+... .++.++..-+++|-..+|.+.+-+++-.+.....+..+.+++++.. .
T Consensus 279 ~Rl~~al~llkke~e~~klq~ki~k-----~vE~k~~~~~r~ylL~eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~---~ 350 (906)
T KOG2004|consen 279 KRLEKALELLKKELELAKLQQKIGK-----EVEEKIKQDHREYLLREQLKAIKKELGIEKDDKDALVEKFRERIKS---L 350 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-----HHHhhhhHHHHHHHHHHHHHHHHHhhCCCccchhhHHHHHHHHhhh---c
Confidence 5567777778888888777765433 4888999999999999999999888866655555667788888777 4
Q ss_pred CchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCccccchHHHHHHHHHHHHh
Q psy14500 346 SDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLL 425 (938)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l 425 (938)
+.++.+.+..+.++.+|+. +.+.++++.+.++ ++.+++.+||++...+ .-.+...+..|
T Consensus 351 ~~P~~v~kv~~eEl~kL~~-----------le~~~sEfnvtrN---------YLdwlt~LPWgk~S~E-n~dl~~Ak~iL 409 (906)
T KOG2004|consen 351 KMPDHVLKVIDEELTKLKL-----------LEPSSSEFNVTRN---------YLDWLTSLPWGKSSTE-NLDLARAKEIL 409 (906)
T ss_pred cCcHHHHHHHHHHHHHHhc-----------cCccccchhHHHH---------HHHHHHhCCCCCCChh-hhhHHHHHHhh
Confidence 4777888888888777765 4445556666655 8899999999987766 44577889999
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 505 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 505 (938)
+++-.|.+++++.+.+.+...+.... .+++ .++|+||||+|||++|+.||+++ +..|+++.+..+.+ ++.+
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrgs-~qGk--IlCf~GPPGVGKTSI~kSIA~AL---nRkFfRfSvGG~tD---vAeI 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRGS-VQGK--ILCFVGPPGVGKTSIAKSIARAL---NRKFFRFSVGGMTD---VAEI 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhccc-CCCc--EEEEeCCCCCCcccHHHHHHHHh---CCceEEEecccccc---HHhh
Confidence 99999999999999999976654311 1222 58899999999999999999999 77899998887765 5567
Q ss_pred cCCCCCCccccccchhHHHHH-hCCCEEEEEccccccCHHH----HHHHHHhhc---CCceecCC-CceeecCCeEEEEe
Q psy14500 506 IGAPPGYIGYEEGGYLTEIVR-RKPYSLILLDEIEKANSDV----FNILLQILD---DGRLTDNR-GRTINFRNTIIVMT 576 (938)
Q Consensus 506 ~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDEid~~~~~~----~~~Ll~~le---~g~~~~~~-g~~~~~~~~iiI~t 576 (938)
-|+...|+|.-+++.+...-+ ...+.+++||||||+.... ..+||.+|| +..|.|.. ..+++.++++||||
T Consensus 481 kGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicT 560 (906)
T KOG2004|consen 481 KGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICT 560 (906)
T ss_pred cccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEe
Confidence 799999999999876644332 2336799999999998643 588999997 34455544 56788999999999
Q ss_pred cCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccC---CeEEE
Q psy14500 577 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMN---MDLKI 653 (938)
Q Consensus 577 tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~---~~l~~ 653 (938)
.|. -..++++|++|+ ++|.++-+..++..+|++.+|-. +..+..| -.+.+
T Consensus 561 AN~------------------------idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip--~a~~~~gl~~e~v~i 613 (906)
T KOG2004|consen 561 ANV------------------------IDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIP--QALKDCGLKPEQVKI 613 (906)
T ss_pred ccc------------------------cccCChhhhhhh-heeeccCccHHHHHHHHHHhhhh--HHHHHcCCCHHhcCc
Confidence 996 335899999999 69999999999999999988744 2333333 34779
Q ss_pred cHHHHHHHHhhcccccccccccccchHHHHHH
Q psy14500 654 SKAALKKISNIGFDLIYGARDVHGCKKSLSIL 685 (938)
Q Consensus 654 ~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~ 685 (938)
+++++..|.. .|...-|+|.|+..+.++-|.
T Consensus 614 s~~al~~lI~-~YcrEaGVRnLqk~iekI~Rk 644 (906)
T KOG2004|consen 614 SDDALLALIE-RYCREAGVRNLQKQIEKICRK 644 (906)
T ss_pred cHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHH
Confidence 9999988887 578889999999995544443
No 29
>PHA02239 putative protein phosphatase
Probab=99.93 E-value=5.8e-26 Score=234.66 Aligned_cols=125 Identities=22% Similarity=0.461 Sum_probs=97.8
Q ss_pred ccccccccchHHHHHHHHHhcccC-CccccccccccCCCCeeEehhHHHHHhc---CCccEEEcCCChHHHHHHHhcccc
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKS-PEANFIFLGDLINKGPQSLDTLRMVYSM---RNYAKIVLGNHEIHLLDVLININK 745 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~-~~~~li~~GD~~drg~~~~~v~~~~~~~---~~~~~~v~GNHe~~~l~~~~~~~~ 745 (938)
+.++|||||++.+.++++.+.... +.+.++++||++|||+.+.++++.++++ ...+++|+||||.|+++++.+...
T Consensus 4 ~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~~~~~~~l~GNHE~~~l~~~~~~~~ 83 (235)
T PHA02239 4 YVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLLGNHDDEFYNIMENVDR 83 (235)
T ss_pred EEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhCchh
Confidence 679999999999999999986542 4689999999999999999999998876 236889999999999998854331
Q ss_pred ----------CCccccHHHhh------------------------------CCCCHHHHHHHHhcCCceEEeCCEEEEec
Q psy14500 746 ----------KSKLDTFDDIL------------------------------DAPDKKKLVSWLRTQPLAIYYKKYLMIHA 785 (938)
Q Consensus 746 ----------~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~lp~~~~~~~~~~vHA 785 (938)
+++.+|+.++. ..+.+.++..|+++||++++.++++||||
T Consensus 84 ~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~~~~ifVHA 163 (235)
T PHA02239 84 LSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKEDKYIFSHS 163 (235)
T ss_pred cccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEECCEEEEeC
Confidence 12223332220 01234678889999999999999999999
Q ss_pred ccCcCCCHH
Q psy14500 786 GVAKQWTAQ 794 (938)
Q Consensus 786 g~~p~~~~~ 794 (938)
|+.|..+++
T Consensus 164 Gi~p~~~~~ 172 (235)
T PHA02239 164 GGVSWKPVE 172 (235)
T ss_pred CCCCCCChh
Confidence 999975433
No 30
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.93 E-value=7.4e-25 Score=230.37 Aligned_cols=201 Identities=24% Similarity=0.355 Sum_probs=167.8
Q ss_pred hhHHHHHhcCCCCCccccHHHH---HHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEI---RRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~---~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
.+|++++||++|+++|||++.+ +-|...+.....++++|+|||||||||+|+.||... ++.+..++.
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~sA 81 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALSA 81 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEecc
Confidence 4999999999999999999876 446667778899999999999999999999999988 778887764
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHH
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEY 172 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~ 172 (938)
..++.+ .++.++++++.. +...||||||||++.+ ..++.|++.+|+|.|++|+|||.++
T Consensus 82 --v~~gvk-------dlr~i~e~a~~~~~~gr~tiLflDEIHRfnK--------~QQD~lLp~vE~G~iilIGATTENP- 143 (436)
T COG2256 82 --VTSGVK-------DLREIIEEARKNRLLGRRTILFLDEIHRFNK--------AQQDALLPHVENGTIILIGATTENP- 143 (436)
T ss_pred --ccccHH-------HHHHHHHHHHHHHhcCCceEEEEehhhhcCh--------hhhhhhhhhhcCCeEEEEeccCCCC-
Confidence 332222 688999888533 3478999999999965 4566899999999999999999988
Q ss_pred HHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcc---cCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHH
Q psy14500 173 RQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVH---HGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 249 (938)
Q Consensus 173 ~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~---~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 249 (938)
.+.++++|+||+.++.|.+++.++...++++.+...+.. ..+.+++++++.++.++.++. +.+...++.
T Consensus 144 --sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~------R~aLN~LE~ 215 (436)
T COG2256 144 --SFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA------RRALNLLEL 215 (436)
T ss_pred --CeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH------HHHHHHHHH
Confidence 679999999999999999999999999998733322221 225589999999999999999 999999988
Q ss_pred HHHHHH
Q psy14500 250 AAAKIK 255 (938)
Q Consensus 250 a~~~~~ 255 (938)
+....+
T Consensus 216 ~~~~~~ 221 (436)
T COG2256 216 AALSAE 221 (436)
T ss_pred HHHhcC
Confidence 876654
No 31
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.92 E-value=2.3e-25 Score=229.39 Aligned_cols=196 Identities=22% Similarity=0.239 Sum_probs=133.5
Q ss_pred hcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHHHHHhcc
Q psy14500 664 IGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLINI 743 (938)
Q Consensus 664 ~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l~~~~~~ 743 (938)
..+.+-+.++|+|||+++++++++.+.|....|.++++||++||||.+.+|++++.+ .++.+|+||||+|+++++...
T Consensus 12 ~~~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~--~~~~~v~GNHE~~~~~~~~~~ 89 (218)
T PRK09968 12 HHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ--PWFISVKGNHEAMALDAFETG 89 (218)
T ss_pred CCCCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh--CCcEEEECchHHHHHHHHhcC
Confidence 345566889999999999999999998877789999999999999999999999874 468899999999999987532
Q ss_pred ccCCccccHHHhhCCC------CHHHHHHHHhcCCceEEeC----CEEEEecccCcCCCHHHHHHHhHHHHHHhhhccHH
Q psy14500 744 NKKSKLDTFDDILDAP------DKKKLVSWLRTQPLAIYYK----KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWK 813 (938)
Q Consensus 744 ~~~~~~~~~~~~~~~~------~~~~~~~~l~~lp~~~~~~----~~~~vHAg~~p~~~~~~~~~~~~~~~~~l~~~~~~ 813 (938)
...........|.... ....++.||++||++++.. +++|||||++..+ ... .....
T Consensus 90 ~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p~~~-~~~---~~~~~---------- 155 (218)
T PRK09968 90 DGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYPGDE-YDF---GKEIA---------- 155 (218)
T ss_pred ChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCCCch-hhh---ccccc----------
Confidence 2111111111121111 1234567999999999753 6999999984321 000 00000
Q ss_pred HHHHHhcCCCCCCCCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCCcCCCceE
Q psy14500 814 NLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITV 893 (938)
Q Consensus 814 ~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~v 893 (938)
..+..|.+. ++. ....+|...+ .+...|
T Consensus 156 --------~~~~~w~r~----------------------~~~-------------------~~~~~~~~~~---~~~~~v 183 (218)
T PRK09968 156 --------ESELLWPVD----------------------RVQ-------------------KSLNGELQQI---NGADYF 183 (218)
T ss_pred --------hhhceeCcH----------------------HHh-------------------hCcccccccc---CCCCEE
Confidence 011123211 110 0111222111 234689
Q ss_pred EEccCCCcCcccCCCeEEeccccccCCeEEEEEe
Q psy14500 894 LFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCL 927 (938)
Q Consensus 894 v~GH~~~~~~~~~~~~~~lDtG~~~gg~Lta~~l 927 (938)
|||||+.+.+...++.++|||||++||+|||+++
T Consensus 184 v~GHTh~~~~~~~~~~i~IDtGs~~gG~Lt~~~~ 217 (218)
T PRK09968 184 IFGHMMFDNIQTFANQIYIDTGSPKSGRLSFYKI 217 (218)
T ss_pred EECCCCcCcceeECCEEEEECCCCCCCceeEEec
Confidence 9999999998888899999999999999999986
No 32
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=3.7e-24 Score=221.35 Aligned_cols=201 Identities=23% Similarity=0.312 Sum_probs=166.0
Q ss_pred hcCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
+--+++++=|-++.++++.+.+. -.++.+||||||||||||.||+|+|+.. ++.++.
T Consensus 146 PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIr 215 (406)
T COG1222 146 PDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIR 215 (406)
T ss_pred CCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEE
Confidence 33478888889999998888664 3677899999999999999999999988 899999
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCC---CCCccchhhhhhhhcc-------CCceE
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK---VEGSIDAGNMLKPELS-------RGELH 162 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~---~~~~~~~~~~L~~~l~-------~~~i~ 162 (938)
+..+.++ -+|.|+....++.+|.-|+. +.|+|+||||||.+...+. ++++.+++.++.++|. .++|.
T Consensus 216 vvgSElV--qKYiGEGaRlVRelF~lAre-kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvK 292 (406)
T COG1222 216 VVGSELV--QKYIGEGARLVRELFELARE-KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVK 292 (406)
T ss_pred eccHHHH--HHHhccchHHHHHHHHHHhh-cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeE
Confidence 9999999 67999999999999999985 4599999999999987553 3456678888888883 57999
Q ss_pred EEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 163 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 163 vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
+|+|||+++ .+||||+| ||+. |+||.|+.+.|..||+-+..+.....+++ ++.++..+.++ .
T Consensus 293 VI~ATNR~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd-----~e~la~~~~g~-----s 357 (406)
T COG1222 293 VIMATNRPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD-----LELLARLTEGF-----S 357 (406)
T ss_pred EEEecCCcc-----ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC-----HHHHHHhcCCC-----c
Confidence 999999999 89999999 9996 99999999999999999888765555443 45566665443 4
Q ss_pred chhhhhHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKI 254 (938)
Q Consensus 240 p~~a~~ll~~a~~~~ 254 (938)
++....++-+|...+
T Consensus 358 GAdlkaictEAGm~A 372 (406)
T COG1222 358 GADLKAICTEAGMFA 372 (406)
T ss_pred hHHHHHHHHHHhHHH
Confidence 566667777765443
No 33
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.91 E-value=1.2e-23 Score=206.91 Aligned_cols=189 Identities=26% Similarity=0.355 Sum_probs=151.8
Q ss_pred HHHHhcCCCCCccccHHHHHHHH---HHHh------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 22 TEKARLGKLDPVIGRDDEIRRAI---QVLQ------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 22 ~~~~~~~~~~~lvG~~~~~~~l~---~~l~------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
.+..+.-+|+++|||+++.+... .+|. .+.+.|||||||||||||++|+++|++. +.+++.
T Consensus 112 ~e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l~ 181 (368)
T COG1223 112 REIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLLL 181 (368)
T ss_pred hhhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceEE
Confidence 34556669999999998866543 3443 4778999999999999999999999988 788999
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC----ccchhhhhhhhc----cCCceEEE
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG----SIDAGNMLKPEL----SRGELHCI 164 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~----~~~~~~~L~~~l----~~~~i~vI 164 (938)
+....+. +.++|+...++..+++.|+.. .|||+||||+|.+.-++..+. -.++.|+|+..| ++.+++.|
T Consensus 182 vkat~li--GehVGdgar~Ihely~rA~~~-aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtI 258 (368)
T COG1223 182 VKATELI--GEHVGDGARRIHELYERARKA-APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTI 258 (368)
T ss_pred echHHHH--HHHhhhHHHHHHHHHHHHHhc-CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEE
Confidence 9988888 678999999999999999854 499999999999976654321 134667777776 35679999
Q ss_pred EecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhc
Q psy14500 165 GATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 233 (938)
Q Consensus 165 ~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 233 (938)
++||+++ .+|+++++||.. |+|..|+.++|..|++...+.+... ++.. ++.++..+.++
T Consensus 259 aaTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp--v~~~---~~~~~~~t~g~ 318 (368)
T COG1223 259 AATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP--VDAD---LRYLAAKTKGM 318 (368)
T ss_pred eecCChh-----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc--cccC---HHHHHHHhCCC
Confidence 9999999 899999999986 9999999999999999999886543 2222 55566655443
No 34
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2e-23 Score=211.39 Aligned_cols=276 Identities=24% Similarity=0.349 Sum_probs=204.3
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHhh----hcCCC--CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14500 417 KLLNIENLLCKRVVGQDEAISAVSNAIRRS----RSGLS--DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 490 (938)
Q Consensus 417 ~l~~l~~~l~~~viGq~~~~~~l~~~l~~~----~~~~~--~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~ 490 (938)
...++...|++.|+||+.+++.++-++..+ ..... +-.-...++|+.||+|||||.||+.||+.+ +.||..
T Consensus 51 tP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFai 127 (408)
T COG1219 51 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAI 127 (408)
T ss_pred ChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCeee
Confidence 456788999999999999998777665332 22111 111233489999999999999999999999 899999
Q ss_pred eccccccchhhhhhhcCCCCCCccccccchhHHHHH-------hCCCEEEEEccccccC--------------HHHHHHH
Q psy14500 491 IDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKAN--------------SDVFNIL 549 (938)
Q Consensus 491 ~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~lDEid~~~--------------~~~~~~L 549 (938)
.|+..++. +||+|++..+.+...+. ++..||+|||||||++ ..+|.+|
T Consensus 128 ADATtLTE-----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQAL 196 (408)
T COG1219 128 ADATTLTE-----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQAL 196 (408)
T ss_pred ccccchhh-----------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHH
Confidence 99988874 68999998887777654 4557999999999875 3799999
Q ss_pred HHhhcCCce--ecCCCceeecCCeEEEEecC--------C-Cchhhhhh--------hcc---h--H-HHHHHHH-----
Q psy14500 550 LQILDDGRL--TDNRGRTINFRNTIIVMTSN--------L-GSDKIKEM--------EKG---D--K-EIIKLAV----- 599 (938)
Q Consensus 550 l~~le~g~~--~~~~g~~~~~~~~iiI~ttn--------~-~~~~~~~~--------~~~---~--~-~~~~~~~----- 599 (938)
|+++|.-.. .+.+|++.+....+-|-|+| + |.+.+... ++. + . ......+
T Consensus 197 LKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vep 276 (408)
T COG1219 197 LKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEP 276 (408)
T ss_pred HHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcCh
Confidence 999984322 24457755444444444444 3 33333322 110 1 0 1111121
Q ss_pred HHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH----HHHHHHHHHHHccCCeEEEcHHHHHHHHhhccccccccccc
Q psy14500 600 MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDV 675 (938)
Q Consensus 600 ~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl 675 (938)
.+.++..+.|+|++|++.+..+.+++++++.+|+. ..++++...+.-.++.+.|+++++..+++......-|+|.|
T Consensus 277 eDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGL 356 (408)
T COG1219 277 EDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGL 356 (408)
T ss_pred HHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHH
Confidence 25667788999999999999999999999999997 66777777788889999999999999999999999999999
Q ss_pred ccchHHHHHHHHHhcccCC----ccccccccccCCCCe
Q psy14500 676 HGCKKSLSILLKKIHKKSP----EANFIFLGDLINKGP 709 (938)
Q Consensus 676 ~~~~~~l~~~l~~~~~~~~----~~~li~~GD~~drg~ 709 (938)
++. ++.++-.+.|+-| ...++...+.++...
T Consensus 357 RsI---~E~~lld~MfelPs~~~v~~v~I~~~~v~~~~ 391 (408)
T COG1219 357 RSI---IEELLLDVMFELPSLEDVEKVVITEEVVDGNA 391 (408)
T ss_pred HHH---HHHHHHHHHhhCCCCCCceEEEEeHHHhCCCC
Confidence 999 8888888887655 234555556555443
No 35
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.90 E-value=2e-23 Score=230.18 Aligned_cols=269 Identities=17% Similarity=0.227 Sum_probs=215.2
Q ss_pred ccccccccCChHHHHHHHHHhhCCCccccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEE
Q psy14500 382 KFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFM 461 (938)
Q Consensus 382 ~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iL 461 (938)
.+..+.+.++.+.+...+.+......-.. +...-..-.......++|++.++..+.+.+.+.... ..++|
T Consensus 99 A~Dfl~KP~~~~~L~~~v~ral~~~~~~~---e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s-------~a~VL 168 (464)
T COG2204 99 AFDFLEKPFDLDRLLAIVERALELRELQR---ENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVAPS-------DASVL 168 (464)
T ss_pred cceeeeCCCCHHHHHHHHHHHHHHhhhhh---hhhhhhhccccccCCceecCHHHHHHHHHHHHHhCC-------CCCEE
Confidence 34455677888888888876654311000 000000011134678999999999999999876522 34799
Q ss_pred EeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCC-CccccccchhHHHHHhCCCEEEEEccccc
Q psy14500 462 FLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEK 540 (938)
Q Consensus 462 l~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~ 540 (938)
++|++||||..+|++||+...+.+.||+.+||..+......++|||+..| +.|.... -.+.+..+.+|+||||||..
T Consensus 169 I~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~--r~G~fE~A~GGTLfLDEI~~ 246 (464)
T COG2204 169 ITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITR--RIGRFEQANGGTLFLDEIGE 246 (464)
T ss_pred EECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccc--cCcceeEcCCceEEeecccc
Confidence 99999999999999999999999999999999999998888999999887 4444322 23567888999999999999
Q ss_pred cCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EE
Q psy14500 541 ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-II 619 (938)
Q Consensus 541 ~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i 619 (938)
|+.++|..||.+|+++.+...+|.+.-.-++.||++||.+.....+ .+.|+++|++|++. .+
T Consensus 247 mpl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~-----------------~G~FReDLyyRLnV~~i 309 (464)
T COG2204 247 MPLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVA-----------------AGRFREDLYYRLNVVPL 309 (464)
T ss_pred CCHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHH-----------------cCCcHHHHHhhhcccee
Confidence 9999999999999999999988887778899999999987765433 56899999999976 67
Q ss_pred EccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 620 VFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 620 ~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
..|||.+ +||.-++++++.+++.+....- ..++++++..|.. |+|+.++|.|.++ +++++
T Consensus 310 ~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~--~~~s~~a~~~L~~--y~WPGNVREL~N~---ver~~ 371 (464)
T COG2204 310 RLPPLRERKEDIPLLAEHFLKRFAAELGRPP--KGFSPEALAALLA--YDWPGNVRELENV---VERAV 371 (464)
T ss_pred cCCcccccchhHHHHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHh--CCCChHHHHHHHH---HHHHH
Confidence 7888865 8999999999998887765432 6799999999987 8999999999999 88777
No 36
>KOG0989|consensus
Probab=99.90 E-value=1.3e-23 Score=212.89 Aligned_cols=207 Identities=21% Similarity=0.232 Sum_probs=167.2
Q ss_pred hhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh
Q psy14500 18 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL 97 (938)
Q Consensus 18 ~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~ 97 (938)
-.-|+|||||++|++++||+.++..|.+.+.+...+|.|||||||||||+.|+++|+++.. +.++.+++.+.+.+.
T Consensus 23 ~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaSd 98 (346)
T KOG0989|consen 23 HRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNASD 98 (346)
T ss_pred ccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhcccc
Confidence 3459999999999999999999999999999988899999999999999999999999955 344566777666655
Q ss_pred hhcCccccchHHHHHHHHHHHHH-----hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChh
Q psy14500 98 LLAGTKYRGEFEDRLKKILKEIS-----NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLN 170 (938)
Q Consensus 98 l~~~~~~~g~~~~~l~~~~~~a~-----~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~ 170 (938)
..+.+- ..+--+.+..+..... .+....|+||||+|.| +.+++++|+..|++ ..++||..||+.
T Consensus 99 erGisv-vr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm--------tsdaq~aLrr~mE~~s~~trFiLIcnyl 169 (346)
T KOG0989|consen 99 ERGISV-VREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM--------TSDAQAALRRTMEDFSRTTRFILICNYL 169 (346)
T ss_pred cccccc-hhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh--------hHHHHHHHHHHHhccccceEEEEEcCCh
Confidence 442221 1111111111111110 1122269999999999 45889999999985 678999999999
Q ss_pred HHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHH
Q psy14500 171 EYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 171 ~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 250 (938)
. .+...+.+||+.+.|+++..+.....|+.++.+ ++++++++++..++..|+|.. ++|+..|+.+
T Consensus 170 s-----rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~----E~v~~d~~al~~I~~~S~GdL------R~Ait~Lqsl 234 (346)
T KOG0989|consen 170 S-----RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASK----EGVDIDDDALKLIAKISDGDL------RRAITTLQSL 234 (346)
T ss_pred h-----hCChHHHhhHHHhcCCCcchHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcH------HHHHHHHHHh
Confidence 8 899999999999999999999999999999886 799999999999999999999 9999999887
Q ss_pred HH
Q psy14500 251 AA 252 (938)
Q Consensus 251 ~~ 252 (938)
..
T Consensus 235 s~ 236 (346)
T KOG0989|consen 235 SL 236 (346)
T ss_pred hc
Confidence 65
No 37
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.90 E-value=6.6e-24 Score=218.11 Aligned_cols=191 Identities=26% Similarity=0.314 Sum_probs=129.8
Q ss_pred ccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHHHHHhcccc----
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININK---- 745 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~---- 745 (938)
+.++|+||++.++.++++.+++....+.++++||++|+||.+.++++++.+ .++.+|+||||.+++.+..+...
T Consensus 4 ~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~--~~~~~v~GNhe~~~~~~~~~~~~~~~~ 81 (207)
T cd07424 4 FVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE--PWFHAVRGNHEQMAIDALRAEPLDAVR 81 (207)
T ss_pred EEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc--CCEEEeECCChHHHHhHhhCCCcchhH
Confidence 668999999999999999888755678999999999999999999999875 45889999999999987754211
Q ss_pred ---CCccccHHHhhCCCCHHHHHHHHhcCCceEEeC----CEEEEecccCcCCCHHHHHHHhHHHHHHhhhccHHHHHHH
Q psy14500 746 ---KSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK----KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFK 818 (938)
Q Consensus 746 ---~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~----~~~~vHAg~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 818 (938)
++...+. ........+.+.+||++||++++.+ ++++||||+++....... .. +.+.
T Consensus 82 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~~---~~---~~~~---------- 144 (207)
T cd07424 82 WLANGGEWFL-DLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWSDGV---GA---VTLR---------- 144 (207)
T ss_pred HHhcCCeehh-hcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhhhhh---hc---cccC----------
Confidence 1111111 1111112456889999999998753 589999998764211100 00 0000
Q ss_pred hcCCCCCCCCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccC-CCCcCCCceEEEcc
Q psy14500 819 LYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDL-PNRKTIDITVLFGH 897 (938)
Q Consensus 819 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~~~~vv~GH 897 (938)
-.......|.+. ++ ... .....+...|||||
T Consensus 145 ~~~~~~~~w~~~----------------------~~--------------------------~~~~~~~~~~~~~iV~GH 176 (207)
T cd07424 145 PEDIEELLWSRT----------------------RI--------------------------QKAQTQPIKGVDAVVHGH 176 (207)
T ss_pred cccceeeeeccc----------------------hh--------------------------hhcCccccCCCCEEEECC
Confidence 000011112211 00 000 00111235799999
Q ss_pred CCCcCcccCCCeEEeccccccCCeEEEEEe
Q psy14500 898 WSTLGLIMKPNIICLDTGCVWGNKLTALCL 927 (938)
Q Consensus 898 ~~~~~~~~~~~~~~lDtG~~~gg~Lta~~l 927 (938)
|+++.+...++.++||||||+||+|||+++
T Consensus 177 Th~~~~~~~~~~i~ID~Gsv~gg~Lt~~~~ 206 (207)
T cd07424 177 TPVKRPLRLGNVLYIDTGAVFDGNLTLLDL 206 (207)
T ss_pred CCCCcceEECCEEEEECCCCCCCeEEEEec
Confidence 999999888999999999999999999987
No 38
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.90 E-value=1.2e-23 Score=207.16 Aligned_cols=151 Identities=48% Similarity=0.836 Sum_probs=129.9
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHhc-cCCCceEEeccccccc----hhhhhhhcCCCCCCccccccchhHHHHHhCC
Q psy14500 455 RPYGSFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDMSEFIE----KHSISRLIGAPPGYIGYEEGGYLTEIVRRKP 529 (938)
Q Consensus 455 ~~~~~iLl~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~~~~~~----~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~ 529 (938)
+|..++||+||+|||||++|++||+.++ +...+++.+||++|.. .+.+..++|.+++|++..+.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~----------- 69 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEG----------- 69 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHH-----------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccch-----------
Confidence 4677999999999999999999999998 7889999999999999 77778888888877765443
Q ss_pred CEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhc---chHHHH
Q psy14500 530 YSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK---GDKEII 595 (938)
Q Consensus 530 ~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~---~~~~~~ 595 (938)
+|||||||||+++ .+|+.||++||+|.+++..|+.+++++++||+|||.+......... ......
T Consensus 70 -gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~ 148 (171)
T PF07724_consen 70 -GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIEQEQ 148 (171)
T ss_dssp -TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCHHHH
T ss_pred -hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccccccHHHH
Confidence 3999999999999 9999999999999999999999999999999999998877665432 234455
Q ss_pred HHHHHHHHhhccChHHhhcCCe
Q psy14500 596 KLAVMNEVKIYFRPEFINRIDD 617 (938)
Q Consensus 596 ~~~~~~~l~~~~~~~l~~R~~~ 617 (938)
.....+.+...|.|+|++|||.
T Consensus 149 ~~~~~~~~~~~f~pEf~~Ri~~ 170 (171)
T PF07724_consen 149 EEQIRDLVEYGFRPEFLGRIDV 170 (171)
T ss_dssp CHHHHHHHHHTS-HHHHTTSSE
T ss_pred HHHHHHHHHcCCCHHHHccCCc
Confidence 5667788899999999999985
No 39
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2.1e-21 Score=226.90 Aligned_cols=383 Identities=27% Similarity=0.339 Sum_probs=233.5
Q ss_pred HHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcC
Q psy14500 44 IQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQ 123 (938)
Q Consensus 44 ~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~ 123 (938)
...+....+.+++++||||+|||+++++++.. . -.. ..++..... .++.|..+..+..++..+....
T Consensus 10 ~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~---~-------~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~~ 76 (494)
T COG0464 10 FKKLGIEPPKGVLLHGPPGTGKTLLARALANE---G-------AEF-LSINGPEIL--SKYVGESELRLRELFEEAEKLA 76 (494)
T ss_pred HHHhCCCCCCCceeeCCCCCchhHHHHHHHhc---c-------Ccc-cccCcchhh--hhhhhHHHHHHHHHHHHHHHhC
Confidence 34445677889999999999999999999987 1 111 223333333 5677888889999999998554
Q ss_pred CCeEEEEeCccccccCCCCCC---ccchhhhhhhhcc---CCceEEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCC
Q psy14500 124 KDIIIFIDELHTMIGTGKVEG---SIDAGNMLKPELS---RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEP 194 (938)
Q Consensus 124 ~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~---~~~i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p 194 (938)
++++++||++.+.+...... ...+.+.+...+. ++.+.+++.|+.+. .+++++.+ ||.. +.+..|
T Consensus 77 -~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~ 150 (494)
T COG0464 77 -PSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-----GLDPAKRRPGRFDREIEVNLP 150 (494)
T ss_pred -CCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcc-----ccChhHhCccccceeeecCCC
Confidence 68999999999998775511 1112333333332 33477888888887 78988888 8886 999999
Q ss_pred CHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHHHhh-cCchhHHHHHHHHHH
Q psy14500 195 DIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEI-DSKPEIMDKLERRLI 273 (938)
Q Consensus 195 ~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~-~~~p~~l~~~~~~~~ 273 (938)
+...+..|+.......... .+.....++..+.++. ......+...+........ ...+.
T Consensus 151 ~~~~~~ei~~~~~~~~~~~-----~~~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~r~~~~~~~---------- 210 (494)
T COG0464 151 DEAGRLEILQIHTRLMFLG-----PPGTGKTLAARTVGKS-----GADLGALAKEAALRELRRAIDLVGE---------- 210 (494)
T ss_pred CHHHHHHHHHHHHhcCCCc-----ccccHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHHhhhccCcc----------
Confidence 9999988887554332111 1344455555555444 1111111111111000000 00000
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCchHhhhh
Q psy14500 274 QLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSK 353 (938)
Q Consensus 274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (938)
.+
T Consensus 211 --------------------------~~---------------------------------------------------- 212 (494)
T COG0464 211 --------------------------YI---------------------------------------------------- 212 (494)
T ss_pred --------------------------cc----------------------------------------------------
Confidence 00
Q ss_pred hhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCCccccchHHHHHHHHHHHHhhccccChH
Q psy14500 354 LKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQD 433 (938)
Q Consensus 354 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~viGq~ 433 (938)
.....+....++..... .......+.+++.++ .|.+
T Consensus 213 --~~~~~~~~~~l~~~~~~--------~~~~~~~~~v~~~di----------------------------------ggl~ 248 (494)
T COG0464 213 --GVTEDDFEEALKKVLPS--------RGVLFEDEDVTLDDI----------------------------------GGLE 248 (494)
T ss_pred --cccHHHHHHHHHhcCcc--------cccccCCCCcceehh----------------------------------hcHH
Confidence 00000000000000000 000001111222221 1222
Q ss_pred HHHHHHHHHHHhh----h----cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q psy14500 434 EAISAVSNAIRRS----R----SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 505 (938)
Q Consensus 434 ~~~~~l~~~l~~~----~----~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 505 (938)
.++..+...+... . .+. ++...+||+||||||||++|+++|..+ +.+|+.++.+++.+.
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~----~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~sk------ 315 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGL----RPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLSK------ 315 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCC----CCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhcc------
Confidence 2222222222111 1 122 222379999999999999999999987 889999999987754
Q ss_pred cCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceeecCCeE
Q psy14500 506 IGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRNTI 572 (938)
Q Consensus 506 ~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~i 572 (938)
|+|..+. +.++...+...+|||||||+|++. ..+.+.|+..++.-. ...+++
T Consensus 316 ------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~~~~v~ 380 (494)
T COG0464 316 ------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVL 380 (494)
T ss_pred ------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------ccCceE
Confidence 6776654 456666677778999999999763 268889999987411 345678
Q ss_pred EEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 573 IVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 573 iI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
+|.|||.+.. ++++++. |||.++.|++++.++..+|+...+..
T Consensus 381 vi~aTN~p~~------------------------ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 381 VIAATNRPDD------------------------LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EEecCCCccc------------------------cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 8999997543 6677777 99999999999999999997776653
No 40
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.89 E-value=4.7e-23 Score=225.62 Aligned_cols=244 Identities=19% Similarity=0.253 Sum_probs=203.4
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 505 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 505 (938)
++.|+|.+.++..+...+++... ...++|+.|++||||..+|++||+.+-+.+.||+.+||+.+...--.+.|
T Consensus 244 f~~Iig~S~~m~~~~~~akr~A~-------tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESEL 316 (560)
T COG3829 244 FDDIIGESPAMLRVLELAKRIAK-------TDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESEL 316 (560)
T ss_pred hhhhccCCHHHHHHHHHHHhhcC-------CCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHH
Confidence 46899999999999988887652 23479999999999999999999999999999999999999998888999
Q ss_pred cCCCCC-CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhh
Q psy14500 506 IGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 584 (938)
Q Consensus 506 ~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 584 (938)
||...| |.|...++. .+.+..+.+|.||||||..|+...|..||.+|+++.+..-+|.+....++.+|+|||.....+
T Consensus 317 FGye~GAFTGA~~~GK-~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~ 395 (560)
T COG3829 317 FGYEKGAFTGASKGGK-PGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKM 395 (560)
T ss_pred hCcCCccccccccCCC-CcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHH
Confidence 999888 566555332 356778889999999999999999999999999999999888888888999999999987766
Q ss_pred hhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHH
Q psy14500 585 KEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKI 661 (938)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L 661 (938)
.+ .+.|+.+|++|++. .|..|||.+ +|+..++..++.++..++...- ..++++++..|
T Consensus 396 i~-----------------~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v--~~ls~~a~~~L 456 (560)
T COG3829 396 IA-----------------EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNV--KGLSPDALALL 456 (560)
T ss_pred Hh-----------------cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCc--ccCCHHHHHHH
Confidence 55 57899999999987 677788865 8999999999988887765431 34999999999
Q ss_pred HhhcccccccccccccchHHHHHHHHHhcccCCccccccccccC
Q psy14500 662 SNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLI 705 (938)
Q Consensus 662 ~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~ 705 (938)
.+ |+|+.++|.|.+. +++++-- ...+.+|...|+.
T Consensus 457 ~~--y~WPGNVRELeNv---iER~v~~----~~~~~~I~~~~lp 491 (560)
T COG3829 457 LR--YDWPGNVRELENV---IERAVNL----VESDGLIDADDLP 491 (560)
T ss_pred Hh--CCCCchHHHHHHH---HHHHHhc----cCCcceeehhhcc
Confidence 87 8999999999999 8888731 1223345555554
No 41
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.89 E-value=4.2e-23 Score=222.40 Aligned_cols=227 Identities=17% Similarity=0.260 Sum_probs=189.9
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
..|||++.++..+.+.+...... ..++|+.|++||||..+|++|++...+...||+.+||+.+......+++|
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~S-------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAKS-------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF 295 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhcC-------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHh
Confidence 46899999999999999866522 24799999999999999999999999999999999999999998899999
Q ss_pred CCCCC-CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 507 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 507 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
|+..| +.|.... -.+.++.+.+|.||+|||..++..+|..||.+|++|.+...+|...-.-++.+|++||.+.....
T Consensus 296 GHeKGAFTGA~~~--r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V 373 (550)
T COG3604 296 GHEKGAFTGAINT--RRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMV 373 (550)
T ss_pred cccccccccchhc--cCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHH
Confidence 99877 3333211 22445677889999999999999999999999999999988877666778999999998766544
Q ss_pred hhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHH
Q psy14500 586 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 662 (938)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 662 (938)
+ .+.|+.+|++|++. .+.+||+.+ +|+.-++..++.++..++... .+.++.++++.|.
T Consensus 374 ~-----------------~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~--~l~ls~~Al~~L~ 434 (550)
T COG3604 374 R-----------------DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA--ILSLSAEALELLS 434 (550)
T ss_pred H-----------------cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc--ccccCHHHHHHHH
Confidence 3 56899999999976 455667654 788888888887777665443 4889999999998
Q ss_pred hhcccccccccccccchHHHHHHH
Q psy14500 663 NIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 663 ~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+ |.|+.++|.+.+| ++++.
T Consensus 435 ~--y~wPGNVRELen~---veRav 453 (550)
T COG3604 435 S--YEWPGNVRELENV---VERAV 453 (550)
T ss_pred c--CCCCCcHHHHHHH---HHHHH
Confidence 7 8899999999999 88887
No 42
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.89 E-value=1.7e-22 Score=218.76 Aligned_cols=250 Identities=24% Similarity=0.402 Sum_probs=186.3
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhh--hcCCCC----CCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEe
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRS--RSGLSD----AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 491 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~--~~~~~~----~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~ 491 (938)
..++.+.|++.|+||+.+++.+..++... +.++.. +..| .++||+||||||||++|++||+.+ +.+|+.+
T Consensus 6 p~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~-~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~v 81 (443)
T PRK05201 6 PREIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKV 81 (443)
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CChheee
Confidence 45677889999999999999999999652 222211 1223 589999999999999999999998 8899999
Q ss_pred ccccccch-----h---hh--------------------------------hhhcCCC----------------------
Q psy14500 492 DMSEFIEK-----H---SI--------------------------------SRLIGAP---------------------- 509 (938)
Q Consensus 492 ~~~~~~~~-----~---~~--------------------------------~~l~g~~---------------------- 509 (938)
|+++|... . .. ..+.+..
T Consensus 82 D~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~ 161 (443)
T PRK05201 82 EATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRK 161 (443)
T ss_pred cchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHH
Confidence 99877642 0 00 0111100
Q ss_pred -----------------C--C----Cc--cccc------------------------------------------cchhH
Q psy14500 510 -----------------P--G----YI--GYEE------------------------------------------GGYLT 522 (938)
Q Consensus 510 -----------------~--~----~~--g~~~------------------------------------------~~~l~ 522 (938)
. + +. |... .....
T Consensus 162 ~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~ 241 (443)
T PRK05201 162 KLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQ 241 (443)
T ss_pred HHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHH
Confidence 0 0 00 0000 00011
Q ss_pred HHHHh-CCCEEEEEccccccC------------HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhc
Q psy14500 523 EIVRR-KPYSLILLDEIEKAN------------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 589 (938)
Q Consensus 523 ~~~~~-~~~~vl~lDEid~~~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~ 589 (938)
.++.. ...||||||||||+. ..+|..||+++|.-.+.. .-.+++..+.+||++..+....-
T Consensus 242 ~ai~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~~i~T~~ILFI~~GAF~~~kp----- 315 (443)
T PRK05201 242 EAIERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYGMVKTDHILFIASGAFHVSKP----- 315 (443)
T ss_pred HHHHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cceeEECCceeEEecCCcCCCCh-----
Confidence 12333 367999999999875 359999999999544443 33468899999999887643211
Q ss_pred chHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHH----HHHHHHHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 590 GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA----NIQLNILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 590 ~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~----~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
..+.|+|++||+.++.+.+|+++++.+|+ ...+.++...++..|+++.|++++++.+++.+
T Consensus 316 ---------------~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 380 (443)
T PRK05201 316 ---------------SDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIA 380 (443)
T ss_pred ---------------hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHH
Confidence 12679999999999999999999999999 46888899999999999999999999999987
Q ss_pred cc-----ccccccccccchHHHHHHHHHhcccCCc
Q psy14500 666 FD-----LIYGARDVHGCKKSLSILLKKIHKKSPE 695 (938)
Q Consensus 666 ~~-----~~~~~~dl~~~~~~l~~~l~~~~~~~~~ 695 (938)
+. .+.|+|.||.. ++++|..+.|+.|.
T Consensus 381 ~~~N~~~~~iGAR~LrtI---~E~~L~d~~Fe~p~ 412 (443)
T PRK05201 381 YQVNEKTENIGARRLHTV---MEKLLEDISFEAPD 412 (443)
T ss_pred HHhcccccccchhhHHHH---HHHHHHHHhccCCC
Confidence 76 68999999999 99999999997764
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.89 E-value=7.6e-23 Score=202.69 Aligned_cols=189 Identities=24% Similarity=0.333 Sum_probs=133.3
Q ss_pred hhhHHHHHhcCCCCCccccHHHHHHHHHHHh-----cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 18 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ-----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 18 ~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~-----~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
..++.+.+||++|+++|||++.+..+.-++. .....|+|||||||+||||||+.+|+++ +..+..
T Consensus 11 ~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~ 80 (233)
T PF05496_consen 11 EAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKI 80 (233)
T ss_dssp -S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEE
T ss_pred chhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEe
Confidence 3578999999999999999999888766544 2345789999999999999999999998 777776
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCc------------
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE------------ 160 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~------------ 160 (938)
++...+.. .+ .+..++..+. .+.||||||||++.+ .+++.|.+.||++.
T Consensus 81 ~sg~~i~k----~~----dl~~il~~l~---~~~ILFIDEIHRlnk--------~~qe~LlpamEd~~idiiiG~g~~ar 141 (233)
T PF05496_consen 81 TSGPAIEK----AG----DLAAILTNLK---EGDILFIDEIHRLNK--------AQQEILLPAMEDGKIDIIIGKGPNAR 141 (233)
T ss_dssp EECCC--S----CH----HHHHHHHT-----TT-EEEECTCCC--H--------HHHHHHHHHHHCSEEEEEBSSSSS-B
T ss_pred ccchhhhh----HH----HHHHHHHhcC---CCcEEEEechhhccH--------HHHHHHHHHhccCeEEEEeccccccc
Confidence 65433221 12 3445555544 345999999999954 56778999998764
Q ss_pred --------eEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhh
Q psy14500 161 --------LHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSY 231 (938)
Q Consensus 161 --------i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~ 231 (938)
+.+|+|||+.. .++++|++||.. ..+..++.++...|+++-... .++++++++..+++..|.
T Consensus 142 ~~~~~l~~FTligATTr~g-----~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~----l~i~i~~~~~~~Ia~rsr 212 (233)
T PF05496_consen 142 SIRINLPPFTLIGATTRAG-----LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI----LNIEIDEDAAEEIARRSR 212 (233)
T ss_dssp EEEEE----EEEEEESSGC-----CTSHCCCTTSSEEEE----THHHHHHHHHHCCHC----TT-EE-HHHHHHHHHCTT
T ss_pred eeeccCCCceEeeeecccc-----ccchhHHhhcceecchhcCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHhcC
Confidence 45799999988 899999999997 579999999999999866654 588999999999999764
Q ss_pred hccccCCCchhhhhHHHHH
Q psy14500 232 RYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 232 ~~~~~~~~p~~a~~ll~~a 250 (938)
+.|+-|..++..+
T Consensus 213 ------GtPRiAnrll~rv 225 (233)
T PF05496_consen 213 ------GTPRIANRLLRRV 225 (233)
T ss_dssp ------TSHHHHHHHHHHH
T ss_pred ------CChHHHHHHHHHH
Confidence 4679888888765
No 44
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.89 E-value=2.8e-23 Score=217.74 Aligned_cols=209 Identities=26% Similarity=0.382 Sum_probs=141.3
Q ss_pred ccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcC---CccEEEcCCChHHHHHHHhccccC
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR---NYAKIVLGNHEIHLLDVLININKK 746 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~---~~~~~v~GNHe~~~l~~~~~~~~~ 746 (938)
+.++||||+++.+.++++.+++ .+.+.+|++||++|+|+.+.+++++++.+. .++++|+||||.+++.+..+....
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~-~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~~~~~~~l~GNHe~~~~~~~~~~~~~ 79 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGF-PPNDKLIFLGDYVDRGPDSVEVIDLLLALKILPDNVILLRGNHEDMLLNFLYGFYDE 79 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCC-CCCCEEEEECCEeCCCCCcHHHHHHHHHhcCCCCcEEEEccCchhhhhhhhcCCcch
Confidence 4689999999999999999987 467999999999999999999999999884 378999999999999877543321
Q ss_pred C----ccccHHHhhCCCCHHHHHHHHhcCCceEEeC--CEEEEecccCcCCCHHHHHHHhHHHHHHhhhccHHHHHHHhc
Q psy14500 747 S----KLDTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLY 820 (938)
Q Consensus 747 ~----~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~--~~~~vHAg~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 820 (938)
. ................+..|+.++|+.++.+ +++|||||++|.+....... ... ...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~-------~~~---------~~~ 143 (225)
T cd00144 80 DEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK-------EEP---------EDQ 143 (225)
T ss_pred hhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh-------cCc---------ccc
Confidence 1 0011122222334577889999999999887 99999999999865442211 000 000
Q ss_pred CCCCCCCCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCCcCCCceEEEccCCC
Q psy14500 821 NHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWST 900 (938)
Q Consensus 821 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~~~ 900 (938)
...+..|.+.. +...... ... ....+....|+..+ .+...||+||||+
T Consensus 144 ~~~~~lw~r~~----------------------~~~~~~~--~~~-----~~~~~~~~~~~~~~---~~~~~ii~GHt~~ 191 (225)
T cd00144 144 LPEDLLWSDPL----------------------ELPGGFG--SSR-----RGGGPDAVEWFLKK---NGLKLIVRGHTPV 191 (225)
T ss_pred cceeeeecCCC----------------------CCCCCCc--CCC-----CCCCHHHHHHHHHH---CCCeEEEEcCccc
Confidence 01223344321 1100000 000 00001112233333 3478999999999
Q ss_pred cCcc---cCCCeEEecccccc----CCeEEEEEe
Q psy14500 901 LGLI---MKPNIICLDTGCVW----GNKLTALCL 927 (938)
Q Consensus 901 ~~~~---~~~~~~~lDtG~~~----gg~Lta~~l 927 (938)
.+.. ..+++++|||||+| ||+|+++.+
T Consensus 192 ~~~~~~~~~~~~i~IDtg~~~~~~~~~~l~~~~~ 225 (225)
T cd00144 192 EEGYEFGHDGNLITIDSGCNYCGGGGNKLAALVL 225 (225)
T ss_pred cCccEEcCCCCEEEEecCCcccCCCCccEEEEeC
Confidence 9876 68899999999999 899999863
No 45
>KOG0738|consensus
Probab=99.88 E-value=4.2e-22 Score=206.96 Aligned_cols=197 Identities=23% Similarity=0.328 Sum_probs=156.3
Q ss_pred CCCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
-+.++|.|.+++.+-|.+.+- +.+..+||++||||||||.||+|+|.++ +..++-++.
T Consensus 209 ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc----------~tTFFNVSs 278 (491)
T KOG0738|consen 209 IKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC----------GTTFFNVSS 278 (491)
T ss_pred cChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh----------cCeEEEech
Confidence 477899999988887777442 5777899999999999999999999998 778888887
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhc-----------cC-CceEE
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL-----------SR-GELHC 163 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l-----------~~-~~i~v 163 (938)
+.+. ++|+|+.|+.++-+|+-|+. ..|+++||||||.|+..+++.+.+++...++..| +. .-|.|
T Consensus 279 stlt--SKwRGeSEKlvRlLFemARf-yAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmV 355 (491)
T KOG0738|consen 279 STLT--SKWRGESEKLVRLLFEMARF-YAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMV 355 (491)
T ss_pred hhhh--hhhccchHHHHHHHHHHHHH-hCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEE
Confidence 7777 78999999999999888874 4589999999999999998888788777776554 22 23666
Q ss_pred EEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchh
Q psy14500 164 IGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 242 (938)
Q Consensus 164 I~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 242 (938)
+++||.+- ++|++|+|||.+ |++|.|+.+.|..+++..+...+. -++-.+..++..+.+|- +.+
T Consensus 356 LAATN~PW-----diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-----~~~~~~~~lae~~eGyS-----GaD 420 (491)
T KOG0738|consen 356 LAATNFPW-----DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-----DDPVNLEDLAERSEGYS-----GAD 420 (491)
T ss_pred EeccCCCc-----chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-----CCCccHHHHHHHhcCCC-----hHH
Confidence 77788776 999999999996 999999999999999877765332 23345667778777776 344
Q ss_pred hhhHHHHHHH
Q psy14500 243 AIDLIDEAAA 252 (938)
Q Consensus 243 a~~ll~~a~~ 252 (938)
+..++..|..
T Consensus 421 I~nvCreAsm 430 (491)
T KOG0738|consen 421 ITNVCREASM 430 (491)
T ss_pred HHHHHHHHHH
Confidence 4455555533
No 46
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.88 E-value=8.1e-22 Score=213.32 Aligned_cols=250 Identities=25% Similarity=0.391 Sum_probs=185.3
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhh-h-cCC----CCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEe
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRS-R-SGL----SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 491 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~-~-~~~----~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~ 491 (938)
..++.+.|++.|+||+++++.+..++... + ... .....| .++||+||||||||++|++||..+ +.+|+.+
T Consensus 3 P~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p-~~ILLiGppG~GKT~lAraLA~~l---~~~fi~v 78 (441)
T TIGR00390 3 PREIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKV 78 (441)
T ss_pred HHHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEe
Confidence 34677889999999999999999998753 1 111 112223 489999999999999999999999 7899999
Q ss_pred ccccccch-----h---hhhh--------------------------------hcCCCCCCcc-----------------
Q psy14500 492 DMSEFIEK-----H---SISR--------------------------------LIGAPPGYIG----------------- 514 (938)
Q Consensus 492 ~~~~~~~~-----~---~~~~--------------------------------l~g~~~~~~g----------------- 514 (938)
|++.+... . .+.. |+.......|
T Consensus 79 dat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~ 158 (441)
T TIGR00390 79 EATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRK 158 (441)
T ss_pred ecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHH
Confidence 98766431 0 0011 1100000000
Q ss_pred -------------------------------cccc------------------------------------------chh
Q psy14500 515 -------------------------------YEEG------------------------------------------GYL 521 (938)
Q Consensus 515 -------------------------------~~~~------------------------------------------~~l 521 (938)
.... ...
T Consensus 159 ~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~ 238 (441)
T TIGR00390 159 KLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIK 238 (441)
T ss_pred HHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHH
Confidence 0000 000
Q ss_pred HHHHH-hCCCEEEEEccccccCH------------HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhh
Q psy14500 522 TEIVR-RKPYSLILLDEIEKANS------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 588 (938)
Q Consensus 522 ~~~~~-~~~~~vl~lDEid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~ 588 (938)
..++. ....||||||||||+.. .+|+.||+++|...+.. ...+++..+.+||++..+.....
T Consensus 239 ~~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~T~~ILFI~~GAF~~~kp---- 313 (441)
T TIGR00390 239 QEAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVKTDHILFIAAGAFQLAKP---- 313 (441)
T ss_pred HHHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEECCceeEEecCCcCCCCh----
Confidence 11122 25679999999998753 58999999999544443 33468899999999887643211
Q ss_pred cchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH----HHHHHHHHHHHccCCeEEEcHHHHHHHHhh
Q psy14500 589 KGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNI 664 (938)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 664 (938)
..+.|+|++||+.++.+.+|+.+++.+|+. ..++++...++..|+++.|+++++..+++.
T Consensus 314 ----------------~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~ 377 (441)
T TIGR00390 314 ----------------SDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAEL 377 (441)
T ss_pred ----------------hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHH
Confidence 126799999999999999999999999994 678888989999999999999999999998
Q ss_pred ccc-----ccccccccccchHHHHHHHHHhcccCCc
Q psy14500 665 GFD-----LIYGARDVHGCKKSLSILLKKIHKKSPE 695 (938)
Q Consensus 665 ~~~-----~~~~~~dl~~~~~~l~~~l~~~~~~~~~ 695 (938)
.+. .+.|+|.||.. ++++|+.+.|+.|.
T Consensus 378 A~~~N~~~~~iGAR~Lrti---lE~~l~d~~fe~p~ 410 (441)
T TIGR00390 378 AYNVNEKTENIGARRLHTV---LERLLEDISFEAPD 410 (441)
T ss_pred HHHhcccccccchhhHHHH---HHHHHHHHHhcCCC
Confidence 776 68999999999 99999999997764
No 47
>KOG0730|consensus
Probab=99.88 E-value=4.7e-22 Score=220.84 Aligned_cols=200 Identities=25% Similarity=0.336 Sum_probs=161.8
Q ss_pred CCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
-++++|=|.++..+.+.+.+. -.++++||||||||||||++|+++|++. ++.++.+.
T Consensus 431 v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsvk 500 (693)
T KOG0730|consen 431 VSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSVK 500 (693)
T ss_pred CChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeecc
Confidence 367787778887777775442 2667889999999999999999999998 88999999
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cchhhhhhhhcc----CCceEEEEec
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPELS----RGELHCIGAT 167 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l~----~~~i~vI~~t 167 (938)
...+. ++|+|+.|..++.+|+.|+... |+|+|+||||.+...+++..+ ..+.+.|+..|. .++|.||++|
T Consensus 501 gpEL~--sk~vGeSEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAAT 577 (693)
T KOG0730|consen 501 GPELF--SKYVGESERAIREVFRKARQVA-PCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAAT 577 (693)
T ss_pred CHHHH--HHhcCchHHHHHHHHHHHhhcC-CeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEecc
Confidence 88888 7899999999999999999655 899999999999998864333 224455555553 4589999999
Q ss_pred ChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhh
Q psy14500 168 TLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAI 244 (938)
Q Consensus 168 n~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~ 244 (938)
|+++ .+|++++| ||+. |+++.|+.+.|.+||+...++...... -.+..++..+.+| .+++..
T Consensus 578 NRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~-----vdl~~La~~T~g~-----SGAel~ 642 (693)
T KOG0730|consen 578 NRPD-----MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSED-----VDLEELAQATEGY-----SGAEIV 642 (693)
T ss_pred CChh-----hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCcc-----ccHHHHHHHhccC-----ChHHHH
Confidence 9999 89999999 9997 999999999999999988876433222 2567777776655 467788
Q ss_pred hHHHHHHHHHH
Q psy14500 245 DLIDEAAAKIK 255 (938)
Q Consensus 245 ~ll~~a~~~~~ 255 (938)
.++.+|+..+.
T Consensus 643 ~lCq~A~~~a~ 653 (693)
T KOG0730|consen 643 AVCQEAALLAL 653 (693)
T ss_pred HHHHHHHHHHH
Confidence 88888876654
No 48
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=1.6e-21 Score=216.76 Aligned_cols=204 Identities=21% Similarity=0.209 Sum_probs=161.2
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCC--------------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN-------------- 83 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~-------------- 83 (938)
..|.++|||++|+++|||+.+++.|..++..+..+| +||+||+||||||+|+.+|+.+.+...+.
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 579999999999999999999999999988877766 79999999999999999999986532110
Q ss_pred CcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--
Q psy14500 84 SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 158 (938)
Q Consensus 84 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 158 (938)
......+++++...- .| ...++.+...+. ..+...|+||||+|.|. .++++.|+..++.
T Consensus 86 ~g~~~dviEIdaas~------~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------~~A~NALLKtLEEPp 149 (484)
T PRK14956 86 KGISSDVLEIDAASN------RG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------DQSFNALLKTLEEPP 149 (484)
T ss_pred ccCCccceeechhhc------cc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------HHHHHHHHHHhhcCC
Confidence 000113344443211 11 113444444443 22345799999999993 4678889999987
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
+.+++|++||... .+.+++++||..+.|..++.++....+++++.. .++.++++++..++..+.|.+
T Consensus 150 ~~viFILaTte~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~----Egi~~e~eAL~~Ia~~S~Gd~---- 216 (484)
T PRK14956 150 AHIVFILATTEFH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI----ENVQYDQEGLFWIAKKGDGSV---- 216 (484)
T ss_pred CceEEEeecCChh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCChH----
Confidence 6899999999877 899999999999999999999999999988875 688999999999999999988
Q ss_pred CchhhhhHHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAAK 253 (938)
Q Consensus 239 ~p~~a~~ll~~a~~~ 253 (938)
|+++.++++++..
T Consensus 217 --RdAL~lLeq~i~~ 229 (484)
T PRK14956 217 --RDMLSFMEQAIVF 229 (484)
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999997753
No 49
>KOG0734|consensus
Probab=99.86 E-value=2.6e-21 Score=207.76 Aligned_cols=203 Identities=22% Similarity=0.316 Sum_probs=153.1
Q ss_pred CCCCCccccHHHHHHHHH---HHh---------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 28 GKLDPVIGRDDEIRRAIQ---VLQ---------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~---~l~---------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
-+|+++-|.+++..+|.+ +|. .+-+.+|||+||||||||.||+++|.+. +.+++...-
T Consensus 301 v~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----------~VPFF~~sG 370 (752)
T KOG0734|consen 301 VTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----------GVPFFYASG 370 (752)
T ss_pred cccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----------CCCeEeccc
Confidence 379999999976555544 443 4667889999999999999999999988 778887766
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccc---hhhhhhhhcc----CCceEEEEecC
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSID---AGNMLKPELS----RGELHCIGATT 168 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~---~~~~L~~~l~----~~~i~vI~~tn 168 (938)
+.+. ..++|....+++.+|.+|+. ..|||+||||+|.+...+.....+. ..|.|+..|+ +..|++|++||
T Consensus 371 SEFd--Em~VGvGArRVRdLF~aAk~-~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigATN 447 (752)
T KOG0734|consen 371 SEFD--EMFVGVGARRVRDLFAAAKA-RAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGATN 447 (752)
T ss_pred cchh--hhhhcccHHHHHHHHHHHHh-cCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEeccC
Confidence 6555 45788888999999999985 4599999999999977654322212 2344444442 45799999999
Q ss_pred hhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhh
Q psy14500 169 LNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAID 245 (938)
Q Consensus 169 ~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ 245 (938)
.++ .+|++|.| ||+. |.+|.||..-|.+||..++.+.....+ ++.. .+++-+.+ +.+++...
T Consensus 448 fpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~--VD~~---iiARGT~G-----FsGAdLaN 512 (752)
T KOG0734|consen 448 FPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDED--VDPK---IIARGTPG-----FSGADLAN 512 (752)
T ss_pred Chh-----hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccC--CCHh---HhccCCCC-----CchHHHHH
Confidence 999 99999999 9997 999999999999999999887543333 3333 33444333 34677778
Q ss_pred HHHHHHHHHHHhh
Q psy14500 246 LIDEAAAKIKIEI 258 (938)
Q Consensus 246 ll~~a~~~~~~~~ 258 (938)
++++|+-.+....
T Consensus 513 lVNqAAlkAa~dg 525 (752)
T KOG0734|consen 513 LVNQAALKAAVDG 525 (752)
T ss_pred HHHHHHHHHHhcC
Confidence 8888877665443
No 50
>KOG2028|consensus
Probab=99.86 E-value=3.6e-21 Score=197.76 Aligned_cols=207 Identities=21% Similarity=0.325 Sum_probs=161.1
Q ss_pred hhhHHHHHhcCCCCCccccHHHHHH---HHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 18 TIDLTEKARLGKLDPVIGRDDEIRR---AIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 18 ~~~l~~~~~~~~~~~lvG~~~~~~~---l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
..+|.|++||+++++.|||++.+.+ |...+..++.++++|+|||||||||||+.|+...... ...++ .
T Consensus 125 h~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~-------Syrfv--e 195 (554)
T KOG2028|consen 125 HKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH-------SYRFV--E 195 (554)
T ss_pred cCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC-------ceEEE--E
Confidence 3489999999999999999987543 4456667889999999999999999999999865221 23344 4
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHh----cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChh
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISN----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN 170 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~----~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~ 170 (938)
++...++.. .++.+|+.+.+ .+.+.||||||||++.+ ..++.|++.+|.|.|.+|++|+.+
T Consensus 196 lSAt~a~t~-------dvR~ife~aq~~~~l~krkTilFiDEiHRFNk--------sQQD~fLP~VE~G~I~lIGATTEN 260 (554)
T KOG2028|consen 196 LSATNAKTN-------DVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK--------SQQDTFLPHVENGDITLIGATTEN 260 (554)
T ss_pred EeccccchH-------HHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh--------hhhhcccceeccCceEEEecccCC
Confidence 444433332 57888887763 24568999999999965 345689999999999999999987
Q ss_pred HHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhc---------ccCCCCCHHHHHHHHHhhhhccccCCCch
Q psy14500 171 EYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEV---------HHGVEITDPAIVAASELSYRYISDRFMPD 241 (938)
Q Consensus 171 ~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~---------~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 241 (938)
+ .+.++.+|++||.++.+..++.+....||++-+.-+.. +..+.+++.++++++.++.+.. +
T Consensus 261 P---SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa------R 331 (554)
T KOG2028|consen 261 P---SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA------R 331 (554)
T ss_pred C---ccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH------H
Confidence 7 67899999999999999999999999999775442211 1124588899999999999988 8
Q ss_pred hhhhHHHHHHHHHHHh
Q psy14500 242 KAIDLIDEAAAKIKIE 257 (938)
Q Consensus 242 ~a~~ll~~a~~~~~~~ 257 (938)
.+...|+.++.....+
T Consensus 332 ~aLN~Lems~~m~~tr 347 (554)
T KOG2028|consen 332 AALNALEMSLSMFCTR 347 (554)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 8888888775544433
No 51
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.85 E-value=7.9e-21 Score=217.84 Aligned_cols=203 Identities=20% Similarity=0.214 Sum_probs=160.6
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCCC--------------
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNS-------------- 84 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~~-------------- 84 (938)
.|.+||||++|+++|||+..++.|..++..++..|. ||+||+||||||+++++++.+.+......
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 589999999999999999999999999998877775 89999999999999999999865321000
Q ss_pred cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--C
Q psy14500 85 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 159 (938)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 159 (938)
..-..+++++.... +| ...++.+++.+.. .....|+||||+|.|. ....|.|+..||. .
T Consensus 85 G~h~DviEIDAas~------rg--VDdIReLIe~a~~~P~~gr~KVIIIDEah~LT--------~~A~NALLKtLEEPP~ 148 (830)
T PRK07003 85 GRFVDYVEMDAASN------RG--VDEMAALLERAVYAPVDARFKVYMIDEVHMLT--------NHAFNAMLKTLEEPPP 148 (830)
T ss_pred CCCceEEEeccccc------cc--HHHHHHHHHHHHhccccCCceEEEEeChhhCC--------HHHHHHHHHHHHhcCC
Confidence 00113444543211 11 1235556655432 1335699999999993 3567888888976 4
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
.++||++||... .+.++|+|||..+.|..++.++....|+.+++. +++.++++++..+++.+.+.+
T Consensus 149 ~v~FILaTtd~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~----EgI~id~eAL~lIA~~A~Gsm----- 214 (830)
T PRK07003 149 HVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE----ERIAFEPQALRLLARAAQGSM----- 214 (830)
T ss_pred CeEEEEEECChh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 789999999887 889999999999999999999999999988875 688999999999999999988
Q ss_pred chhhhhHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAK 253 (938)
Q Consensus 240 p~~a~~ll~~a~~~ 253 (938)
++++.+++++...
T Consensus 215 -RdALsLLdQAia~ 227 (830)
T PRK07003 215 -RDALSLTDQAIAY 227 (830)
T ss_pred -HHHHHHHHHHHHh
Confidence 9999999988753
No 52
>KOG0745|consensus
Probab=99.85 E-value=2.8e-20 Score=195.75 Aligned_cols=219 Identities=23% Similarity=0.422 Sum_probs=169.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHH-------HhCCC
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV-------RRKPY 530 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~-------~~~~~ 530 (938)
.++|+.||+|+|||.||+.||+.+ +.||...||..++. +||+|++....+...+ ..+..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQ-----------AGYVGeDVEsvi~KLl~~A~~nVekAQq 292 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQEAEYNVEKAQQ 292 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhh-----------cccccccHHHHHHHHHHHccCCHHHHhc
Confidence 379999999999999999999999 89999999999875 6899999877766655 34557
Q ss_pred EEEEEccccccC--------------HHHHHHHHHhhcCCceecC--CC---------ceeecCCeEEEEecCC-Cchhh
Q psy14500 531 SLILLDEIEKAN--------------SDVFNILLQILDDGRLTDN--RG---------RTINFRNTIIVMTSNL-GSDKI 584 (938)
Q Consensus 531 ~vl~lDEid~~~--------------~~~~~~Ll~~le~g~~~~~--~g---------~~~~~~~~iiI~ttn~-~~~~~ 584 (938)
+||||||+||+. ..+|.+||+++| |.+... .| .+++..+.+||+...+ +.+.+
T Consensus 293 GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~ 371 (564)
T KOG0745|consen 293 GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKI 371 (564)
T ss_pred CeEEEehhhhhcccCccccccccccchhHHHHHHHHhc-ccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHH
Confidence 999999999875 379999999998 555432 11 2566777777776543 22221
Q ss_pred h-hh-------hc---------------c-hHHHHHH--HH-----HHHHhhccChHHhhcCCeEEEccCCCHHHHHHHH
Q psy14500 585 K-EM-------EK---------------G-DKEIIKL--AV-----MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 633 (938)
Q Consensus 585 ~-~~-------~~---------------~-~~~~~~~--~~-----~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~ 633 (938)
. +. ++ . +.....+ .+ .+.+...+.|+|++||..+++|.+|+++++.+|+
T Consensus 372 I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VL 451 (564)
T KOG0745|consen 372 ISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVL 451 (564)
T ss_pred HHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHH
Confidence 1 11 00 0 0111111 11 1456677899999999999999999999999998
Q ss_pred H----HHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCC
Q psy14500 634 N----IQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSP 694 (938)
Q Consensus 634 ~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~ 694 (938)
. ..+.++...+.-.++++.+++++++.+++......-|+|.|++. ++++|-...|+-|
T Consensus 452 tEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsI---lE~~LleamfevP 513 (564)
T KOG0745|consen 452 TEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSI---LESLLLEAMFEVP 513 (564)
T ss_pred hcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHH---HHHHHhhhcccCC
Confidence 7 56677777777789999999999999999999999999999999 9999988777654
No 53
>KOG0733|consensus
Probab=99.85 E-value=1.1e-20 Score=206.32 Aligned_cols=175 Identities=26% Similarity=0.391 Sum_probs=140.0
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEE
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 129 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~ 129 (938)
..+.+|||+||||||||.||+|+|++. +..++.+.-..+. .+|+|+.|..++.+|..|+. ..|||+|
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELl--NkYVGESErAVR~vFqRAR~-saPCVIF 609 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKGPELL--NKYVGESERAVRQVFQRARA-SAPCVIF 609 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecCHHHH--HHHhhhHHHHHHHHHHHhhc-CCCeEEE
Confidence 557889999999999999999999998 8899999888888 68999999999999999985 4599999
Q ss_pred EeCccccccCCCCCCc---cchhhhhhhhc----cCCceEEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHH
Q psy14500 130 IDELHTMIGTGKVEGS---IDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEET 199 (938)
Q Consensus 130 iDEid~l~~~~~~~~~---~~~~~~L~~~l----~~~~i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~ 199 (938)
+||+|.|.+.++..++ ..+.|.|+..| ++.+|.+|+|||+++ -+|||++| ||+. ++++.|+.++|
T Consensus 610 FDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD-----iIDpAiLRPGRlDk~LyV~lPn~~eR 684 (802)
T KOG0733|consen 610 FDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD-----IIDPAILRPGRLDKLLYVGLPNAEER 684 (802)
T ss_pred ecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc-----ccchhhcCCCccCceeeecCCCHHHH
Confidence 9999999998876543 34667777666 356899999999999 89999999 9997 99999999999
Q ss_pred HHHHHhhhhhhhcccCCCCCH-HHHHHHHHhhh--hccccCCCchhhhhHHHHHH
Q psy14500 200 ISILRGLQKKYEVHHGVEITD-PAIVAASELSY--RYISDRFMPDKAIDLIDEAA 251 (938)
Q Consensus 200 ~~il~~~~~~~~~~~~~~i~~-~~l~~~~~~s~--~~~~~~~~p~~a~~ll~~a~ 251 (938)
..||+.+.+. +...+++ -.++.++.... +| .+++...++.++.
T Consensus 685 ~~ILK~~tkn----~k~pl~~dVdl~eia~~~~c~gf-----tGADLaaLvreAs 730 (802)
T KOG0733|consen 685 VAILKTITKN----TKPPLSSDVDLDEIARNTKCEGF-----TGADLAALVREAS 730 (802)
T ss_pred HHHHHHHhcc----CCCCCCcccCHHHHhhcccccCC-----chhhHHHHHHHHH
Confidence 9999988873 1222222 23445554432 43 3555556666654
No 54
>KOG0739|consensus
Probab=99.85 E-value=1e-20 Score=189.59 Aligned_cols=183 Identities=23% Similarity=0.366 Sum_probs=152.1
Q ss_pred CCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
+.+++-|-+.+.+.|.+.+- +.+.+.+|||||||||||.||+++|.+. +..+++++.+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSSS 200 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSS 200 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeehH
Confidence 67789999988888877442 4557889999999999999999999988 7899999999
Q ss_pred hhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhc---------cCCceEEEEec
Q psy14500 97 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL---------SRGELHCIGAT 167 (938)
Q Consensus 97 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l---------~~~~i~vI~~t 167 (938)
+++ ++|.|+.++.++.+|+-++++ .|+|+||||||.++.++....+ ++...++..+ ....+.|+++|
T Consensus 201 DLv--SKWmGESEkLVknLFemARe~-kPSIIFiDEiDslcg~r~enEs-easRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 201 DLV--SKWMGESEKLVKNLFEMAREN-KPSIIFIDEIDSLCGSRSENES-EASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred HHH--HHHhccHHHHHHHHHHHHHhc-CCcEEEeehhhhhccCCCCCch-HHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 999 789999999999999998854 4999999999999988754443 3444444322 24578999999
Q ss_pred ChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 168 TLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 168 n~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
|-+- .+|.+++|||.. |++|.|....|..+++-.+.. ....+++..+.+++..+.+|-
T Consensus 277 NiPw-----~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~----tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 277 NIPW-----VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD----TPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred CCch-----hHHHHHHHHhhcceeccCCcHHHhhhhheeccCC----CccccchhhHHHHHhhcCCCC
Confidence 9886 899999999996 999999999999998765543 235688999999999999887
No 55
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=1.2e-20 Score=213.94 Aligned_cols=203 Identities=20% Similarity=0.231 Sum_probs=160.3
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCC-----C---CC-----
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEV-----P---NS----- 84 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~-----p---~~----- 84 (938)
..|.+||||++|+++|||+..++.|.+.+..++..|. ||+||+||||||+|+.+++.+.+... + .+
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 3689999999999999999999999999998888885 99999999999999999999965210 0 00
Q ss_pred ------cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhh
Q psy14500 85 ------LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE 155 (938)
Q Consensus 85 ------~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~ 155 (938)
.....+++++.... .| ...++.+++.+. ..++..|+||||+|.|. .+..|.|+..
T Consensus 84 C~~I~aG~hpDviEIdAas~------~g--VDdIReLie~~~~~P~~gr~KViIIDEah~Ls--------~~AaNALLKT 147 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASN------RG--VDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLT--------NHAFNAMLKT 147 (700)
T ss_pred HHHHHcCCCCcceEeccccc------CC--HHHHHHHHHHHHhchhcCCceEEEEEChHhcC--------HHHHHHHHHh
Confidence 00014445544211 11 123555555543 22345799999999994 3577889999
Q ss_pred ccC--CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhc
Q psy14500 156 LSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 233 (938)
Q Consensus 156 l~~--~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 233 (938)
||. +.++||++||... .+.++++|||..+.|..++.++....|+.++.. .++.++++++..++..+.|.
T Consensus 148 LEEPP~~v~FILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~----Egi~~d~eAL~~IA~~A~Gs 218 (700)
T PRK12323 148 LEEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE----EGIAHEVNALRLLAQAAQGS 218 (700)
T ss_pred hccCCCCceEEEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 986 6789999999888 889999999999999999999999999888764 57889999999999999888
Q ss_pred cccCCCchhhhhHHHHHHH
Q psy14500 234 ISDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 234 ~~~~~~p~~a~~ll~~a~~ 252 (938)
. ++++.+++++..
T Consensus 219 ~------RdALsLLdQaia 231 (700)
T PRK12323 219 M------RDALSLTDQAIA 231 (700)
T ss_pred H------HHHHHHHHHHHH
Confidence 7 999999988765
No 56
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.84 E-value=2.3e-20 Score=204.06 Aligned_cols=226 Identities=16% Similarity=0.236 Sum_probs=180.4
Q ss_pred ccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCC
Q psy14500 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 508 (938)
Q Consensus 429 viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 508 (938)
++|++.+++.+...+++.... ..++||+|++||||+++|++|+....+...||+.+||+.+........+||+
T Consensus 1 liG~S~~m~~~~~~~~~~a~~-------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL-------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc
Confidence 478899999988888876522 2379999999999999999999998777889999999988766666788998
Q ss_pred CCC-CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhh
Q psy14500 509 PPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 587 (938)
Q Consensus 509 ~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 587 (938)
..| +.|.... -.+.+..+.+++||||||+.++..+|..|+.+|+++.+...++......++.+|++||.....+..
T Consensus 74 ~~g~~~ga~~~--~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~- 150 (329)
T TIGR02974 74 EAGAFTGAQKR--HQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAA- 150 (329)
T ss_pred ccccccCcccc--cCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhh-
Confidence 765 3333221 224466777899999999999999999999999999988766665666789999999976543322
Q ss_pred hcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCC--HHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhh
Q psy14500 588 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN--RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 664 (938)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~--~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 664 (938)
.+.|+++|++|++. .|.+|||. .+|+..++..++.++....... +...+++++++.|.+
T Consensus 151 ----------------~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~-~~~~ls~~a~~~L~~- 212 (329)
T TIGR02974 151 ----------------EGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLP-LFPGFTPQAREQLLE- 212 (329)
T ss_pred ----------------cCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCC-CCCCcCHHHHHHHHh-
Confidence 45799999999964 89999998 4899999998888776554321 114799999999988
Q ss_pred cccccccccccccchHHHHHHH
Q psy14500 665 GFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 665 ~~~~~~~~~dl~~~~~~l~~~l 686 (938)
|+|+.+++.|+++ +++++
T Consensus 213 -y~WPGNvrEL~n~---i~~~~ 230 (329)
T TIGR02974 213 -YHWPGNVRELKNV---VERSV 230 (329)
T ss_pred -CCCCchHHHHHHH---HHHHH
Confidence 8899999999998 77776
No 57
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=7e-20 Score=208.38 Aligned_cols=203 Identities=20% Similarity=0.226 Sum_probs=159.6
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCC--------------C
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN--------------S 84 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~--------------~ 84 (938)
.|.+||||++|+++|||+..++.|..++.+++.++. ||+||+||||||+|+++|+.+.+...+. .
T Consensus 4 ~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~ 83 (702)
T PRK14960 4 VLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNE 83 (702)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhc
Confidence 689999999999999999999999999988776665 9999999999999999999986532110 0
Q ss_pred cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--C
Q psy14500 85 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 159 (938)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 159 (938)
.....++.++.+.- .+ ...++.++..+.. .++..|+||||+|.|. ....+.|+..++. +
T Consensus 84 g~hpDviEIDAAs~------~~--VddIReli~~~~y~P~~gk~KV~IIDEVh~LS--------~~A~NALLKtLEEPP~ 147 (702)
T PRK14960 84 GRFIDLIEIDAASR------TK--VEDTRELLDNVPYAPTQGRFKVYLIDEVHMLS--------THSFNALLKTLEEPPE 147 (702)
T ss_pred CCCCceEEeccccc------CC--HHHHHHHHHHHhhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhcCCC
Confidence 01124455544211 11 1245556555431 2345699999999993 3567889999987 6
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
.+.+|++|+.+. .+.+++++||..+.|.+++.++....++.++++ .++.++++++..++..+++.+
T Consensus 148 ~v~FILaTtd~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k----EgI~id~eAL~~IA~~S~GdL----- 213 (702)
T PRK14960 148 HVKFLFATTDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILEK----EQIAADQDAIWQIAESAQGSL----- 213 (702)
T ss_pred CcEEEEEECChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 788999888776 678899999999999999999999999988876 689999999999999999888
Q ss_pred chhhhhHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAK 253 (938)
Q Consensus 240 p~~a~~ll~~a~~~ 253 (938)
+.+..+++++++.
T Consensus 214 -RdALnLLDQaIay 226 (702)
T PRK14960 214 -RDALSLTDQAIAY 226 (702)
T ss_pred -HHHHHHHHHHHHh
Confidence 9999999988753
No 58
>KOG0736|consensus
Probab=99.84 E-value=5.3e-20 Score=206.10 Aligned_cols=198 Identities=25% Similarity=0.401 Sum_probs=155.4
Q ss_pred CCCCccccHHHHHHHHHHHh-----------c-CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQ-----------R-RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~-----------~-~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
+-+++=|-+++...++..+. + ..+++||||||||||||.+|+|+|.++ +..++++.--
T Consensus 670 ~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVKGP 739 (953)
T KOG0736|consen 670 SWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVKGP 739 (953)
T ss_pred chhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeecCH
Confidence 66788888888888888664 1 336789999999999999999999998 7788888877
Q ss_pred hhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCcc-----chhhhhhhhcc------CCceEEEE
Q psy14500 97 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSI-----DAGNMLKPELS------RGELHCIG 165 (938)
Q Consensus 97 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~-----~~~~~L~~~l~------~~~i~vI~ 165 (938)
.+. ..|+|+.|++++.+|+.|+. ..|||+|+||+|++.++++..|+. .+...|+..|+ ...+.||+
T Consensus 740 ELL--NMYVGqSE~NVR~VFerAR~-A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViG 816 (953)
T KOG0736|consen 740 ELL--NMYVGQSEENVREVFERARS-AAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIG 816 (953)
T ss_pred HHH--HHHhcchHHHHHHHHHHhhc-cCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEe
Confidence 777 67999999999999999985 559999999999999988765432 23444444442 35799999
Q ss_pred ecChhHHHHhhhcCHHHHc--ccce-EEeeCC-CHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCch
Q psy14500 166 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEP-DIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 241 (938)
Q Consensus 166 ~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p-~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 241 (938)
|||+++ .+||+|+| ||++ +++.++ +.+.+..+|+.+..++....++++ ..+++.+ +..+.++
T Consensus 817 ATNRPD-----LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL-----~eiAk~c----p~~~TGA 882 (953)
T KOG0736|consen 817 ATNRPD-----LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL-----VEIAKKC----PPNMTGA 882 (953)
T ss_pred cCCCcc-----ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH-----HHHHhhC----CcCCchh
Confidence 999999 89999999 9998 888888 566678999999998877666633 3444443 3444566
Q ss_pred hhhhHHHHHHHH
Q psy14500 242 KAIDLIDEAAAK 253 (938)
Q Consensus 242 ~a~~ll~~a~~~ 253 (938)
+...++..|.-.
T Consensus 883 DlYsLCSdA~l~ 894 (953)
T KOG0736|consen 883 DLYSLCSDAMLA 894 (953)
T ss_pred HHHHHHHHHHHH
Confidence 777777776543
No 59
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.84 E-value=9.8e-20 Score=206.84 Aligned_cols=202 Identities=19% Similarity=0.243 Sum_probs=154.5
Q ss_pred cCCCCCccccHHHHHHHHHHH----------hcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 27 LGKLDPVIGRDDEIRRAIQVL----------QRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 27 ~~~~~~lvG~~~~~~~l~~~l----------~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
..+|+++.|.+...+.+.... .-..+.++||+||||||||++|+++|+++ +.+++.++++
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~ 293 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVG 293 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhH
Confidence 347889999887766555421 12456789999999999999999999998 8899999998
Q ss_pred hhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc----cchhhhhhhhcc--CCceEEEEecChh
Q psy14500 97 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS----IDAGNMLKPELS--RGELHCIGATTLN 170 (938)
Q Consensus 97 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~----~~~~~~L~~~l~--~~~i~vI~~tn~~ 170 (938)
.+. +++.|+.+..++.+|..+... .|+||||||+|.++......+. ..+...|+..+. ...+.+|+|||.+
T Consensus 294 ~l~--~~~vGese~~l~~~f~~A~~~-~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~ 370 (489)
T CHL00195 294 KLF--GGIVGESESRMRQMIRIAEAL-SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNI 370 (489)
T ss_pred Hhc--ccccChHHHHHHHHHHHHHhc-CCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCCh
Confidence 887 468899999999999988754 5999999999999875332222 223344455553 4578999999999
Q ss_pred HHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHH
Q psy14500 171 EYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLI 247 (938)
Q Consensus 171 ~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll 247 (938)
+ .+|++++| ||+. ++++.|+.++|..|++.++.+.... ...+..+..++..+.+|. +++...++
T Consensus 371 ~-----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~---~~~~~dl~~La~~T~GfS-----GAdI~~lv 437 (489)
T CHL00195 371 D-----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK---SWKKYDIKKLSKLSNKFS-----GAEIEQSI 437 (489)
T ss_pred h-----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC---cccccCHHHHHhhcCCCC-----HHHHHHHH
Confidence 8 89999998 9986 9999999999999999888764211 223455778888877765 56666677
Q ss_pred HHHHHHH
Q psy14500 248 DEAAAKI 254 (938)
Q Consensus 248 ~~a~~~~ 254 (938)
.+|+...
T Consensus 438 ~eA~~~A 444 (489)
T CHL00195 438 IEAMYIA 444 (489)
T ss_pred HHHHHHH
Confidence 6665544
No 60
>PLN03025 replication factor C subunit; Provisional
Probab=99.83 E-value=5.7e-20 Score=202.04 Aligned_cols=194 Identities=18% Similarity=0.228 Sum_probs=152.8
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL 99 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~ 99 (938)
+|++||||++|++++|+++.++.|..++.....+|+||+||||||||++|+++|+.+..... ...+++++.++..
T Consensus 2 ~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~~ 76 (319)
T PLN03025 2 PWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDDR 76 (319)
T ss_pred ChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeecccccc
Confidence 79999999999999999999999999888888889999999999999999999999844221 1234455543321
Q ss_pred cCccccchHHHHHHHHHHHHHh------cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhH
Q psy14500 100 AGTKYRGEFEDRLKKILKEISN------NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNE 171 (938)
Q Consensus 100 ~~~~~~g~~~~~l~~~~~~a~~------~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~ 171 (938)
. .. .++..+..... .....|++|||+|.|.. +.++.|+..++. +...+|.+||...
T Consensus 77 ~----~~----~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------~aq~aL~~~lE~~~~~t~~il~~n~~~ 140 (319)
T PLN03025 77 G----ID----VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------GAQQALRRTMEIYSNTTRFALACNTSS 140 (319)
T ss_pred c----HH----HHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------HHHHHHHHHHhcccCCceEEEEeCCcc
Confidence 1 11 23333332211 12356999999999943 456778888874 4567888888776
Q ss_pred HHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHH
Q psy14500 172 YRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 249 (938)
Q Consensus 172 ~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 249 (938)
.+.+++++||..++|++|+.++....++.++++ +++.++++++..++..+++.+ +.++..++.
T Consensus 141 -----~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~----egi~i~~~~l~~i~~~~~gDl------R~aln~Lq~ 203 (319)
T PLN03025 141 -----KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA----EKVPYVPEGLEAIIFTADGDM------RQALNNLQA 203 (319)
T ss_pred -----ccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHH
Confidence 778999999999999999999999999988775 688999999999999999988 888888874
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=8.9e-20 Score=213.43 Aligned_cols=203 Identities=17% Similarity=0.206 Sum_probs=159.2
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCC---CC----------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVP---NS---------- 84 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p---~~---------- 84 (938)
..|.+||||.+|++||||+..++.|..++..++.+|. ||+|||||||||+|+++|+.+.+.... .+
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 4789999999999999999999999999988888886 899999999999999999999653210 00
Q ss_pred -cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--
Q psy14500 85 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 158 (938)
Q Consensus 85 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 158 (938)
.....+++++... ..+ ...++.++..+. ..+...|+||||+|.|. .+.++.|++.||.
T Consensus 84 ~g~~~DviEidAas------~~k--VDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------~eAqNALLKtLEEPP 147 (944)
T PRK14949 84 QGRFVDLIEVDAAS------RTK--VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------RSSFNALLKTLEEPP 147 (944)
T ss_pred cCCCceEEEecccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhccC
Confidence 0011223333211 111 113455554443 12345699999999993 4678899999986
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
+.+++|++||.+. .+.+++++||..+.|.+++.++....|++++.. .++.++++++..++..+.|.+
T Consensus 148 ~~vrFILaTTe~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----EgI~~edeAL~lIA~~S~Gd~---- 214 (944)
T PRK14949 148 EHVKFLLATTDPQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----EQLPFEAEALTLLAKAANGSM---- 214 (944)
T ss_pred CCeEEEEECCCch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 6788999998887 788999999999999999999999999888775 478999999999999999988
Q ss_pred CchhhhhHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAA 252 (938)
Q Consensus 239 ~p~~a~~ll~~a~~ 252 (938)
|+++.+++++.+
T Consensus 215 --R~ALnLLdQala 226 (944)
T PRK14949 215 --RDALSLTDQAIA 226 (944)
T ss_pred --HHHHHHHHHHHH
Confidence 999999988774
No 62
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.82 E-value=1.4e-19 Score=205.80 Aligned_cols=196 Identities=26% Similarity=0.379 Sum_probs=157.6
Q ss_pred hHHHHHhcCCCCCccccHHHHHH---HHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRR---AIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~---l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
+|+++|||++|+++|||++.+.. +..++.....+++||+|||||||||+|+++++.+ +..++.++..
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~ 70 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAV 70 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 68999999999999999999777 8888888888899999999999999999999987 5667777653
Q ss_pred hhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHH
Q psy14500 97 LLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYR 173 (938)
Q Consensus 97 ~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~ 173 (938)
.. + ...++.++..+.. .+...||||||+|.+.. ..++.|+..++.+.+++|++|+...
T Consensus 71 ~~--~-------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------~~q~~LL~~le~~~iilI~att~n~-- 131 (413)
T PRK13342 71 TS--G-------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------AQQDALLPHVEDGTITLIGATTENP-- 131 (413)
T ss_pred cc--c-------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------HHHHHHHHHhhcCcEEEEEeCCCCh--
Confidence 21 1 1134555555532 23467999999999843 4567889999999999999887654
Q ss_pred HhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCC-CCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHH
Q psy14500 174 QYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGV-EITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 174 ~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~-~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 252 (938)
...+++++++||..+.|++++.++...+++..+..... ++ .++++++..++..+.+.+ +.+..+++.++.
T Consensus 132 -~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~--~~i~i~~~al~~l~~~s~Gd~------R~aln~Le~~~~ 202 (413)
T PRK13342 132 -SFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER--GLVELDDEALDALARLANGDA------RRALNLLELAAL 202 (413)
T ss_pred -hhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHhCCCCH------HHHHHHHHHHHH
Confidence 24789999999988999999999999999887765422 44 899999999999988776 888888887764
Q ss_pred H
Q psy14500 253 K 253 (938)
Q Consensus 253 ~ 253 (938)
.
T Consensus 203 ~ 203 (413)
T PRK13342 203 G 203 (413)
T ss_pred c
Confidence 3
No 63
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=2.2e-19 Score=202.57 Aligned_cols=204 Identities=22% Similarity=0.231 Sum_probs=162.6
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCC-CcEEEcCCCChHHHHHHHHHHHHHcCCCCC--------------C
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKN-NPVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------S 84 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~-~vLL~Gp~GtGKT~la~~la~~l~~~~~p~--------------~ 84 (938)
.|.+||||++|+++|||+..++.|.+.+..++.+ ++||+||+||||||+|+.+|+.+.+...|. .
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 6889999999999999999999999988877666 589999999999999999999886643221 1
Q ss_pred cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--C
Q psy14500 85 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 159 (938)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 159 (938)
.....+++++.++- .| ...++.+++.+... ....|+||||+|.|. .+..+.|+..+++ .
T Consensus 82 ~~~~Dv~eidaas~------~~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls--------~~A~NaLLK~LEePp~ 145 (491)
T PRK14964 82 SNHPDVIEIDAASN------TS--VDDIKVILENSCYLPISSKFKVYIIDEVHMLS--------NSAFNALLKTLEEPAP 145 (491)
T ss_pred cCCCCEEEEecccC------CC--HHHHHHHHHHHHhccccCCceEEEEeChHhCC--------HHHHHHHHHHHhCCCC
Confidence 12345666665321 11 12466666665422 335699999999993 3577889999986 5
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
.+.+|++|+... .+.+++++||..+.|.+++.++....++.++++ .++.++++++..++..+++..
T Consensus 146 ~v~fIlatte~~-----Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~----Egi~i~~eAL~lIa~~s~Gsl----- 211 (491)
T PRK14964 146 HVKFILATTEVK-----KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK----ENIEHDEESLKLIAENSSGSM----- 211 (491)
T ss_pred CeEEEEEeCChH-----HHHHHHHHhheeeecccccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 788888888776 688899999999999999999999999888875 688999999999999998887
Q ss_pred chhhhhHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKI 254 (938)
Q Consensus 240 p~~a~~ll~~a~~~~ 254 (938)
+.+..+++.++...
T Consensus 212 -R~alslLdqli~y~ 225 (491)
T PRK14964 212 -RNALFLLEQAAIYS 225 (491)
T ss_pred -HHHHHHHHHHHHhc
Confidence 88999999887643
No 64
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=2e-19 Score=208.56 Aligned_cols=204 Identities=19% Similarity=0.203 Sum_probs=160.5
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCC---Cc---------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN---SL--------- 85 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~---~~--------- 85 (938)
..|.+||||++|+++|||+.+++.|...+..++.+|. ||+||+||||||+|+++|+.+.+..... +.
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 4689999999999999999999999999998888885 8999999999999999999997632100 00
Q ss_pred --CCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--
Q psy14500 86 --LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 158 (938)
Q Consensus 86 --~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 158 (938)
....+++++.+. ..+ ...++.+++.+. ..+...|+||||+|.|. .+.+|.|+..||.
T Consensus 84 ~g~~~D~ieidaas------~~~--VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls--------~~a~NALLKtLEEPp 147 (647)
T PRK07994 84 QGRFVDLIEIDAAS------RTK--VEDTRELLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 147 (647)
T ss_pred cCCCCCceeecccc------cCC--HHHHHHHHHHHHhhhhcCCCEEEEEechHhCC--------HHHHHHHHHHHHcCC
Confidence 001334443321 011 123555555543 22445799999999993 4678899999987
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
+.++||++||.++ .+.++++|||..+.|.+++.++....|++++.. .++.+++.++..++..+.|.+
T Consensus 148 ~~v~FIL~Tt~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~----e~i~~e~~aL~~Ia~~s~Gs~---- 214 (647)
T PRK07994 148 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQA----EQIPFEPRALQLLARAADGSM---- 214 (647)
T ss_pred CCeEEEEecCCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 6788999999887 889999999999999999999999999888765 478899999999999999988
Q ss_pred CchhhhhHHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAAK 253 (938)
Q Consensus 239 ~p~~a~~ll~~a~~~ 253 (938)
++++.+++.+...
T Consensus 215 --R~Al~lldqaia~ 227 (647)
T PRK07994 215 --RDALSLTDQAIAS 227 (647)
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999887653
No 65
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.9e-19 Score=206.92 Aligned_cols=203 Identities=21% Similarity=0.203 Sum_probs=159.6
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC--------------
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS-------------- 84 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~-------------- 84 (938)
.|++||||++|+++|||+..++.|..++.....+| +||+||+||||||+|+++|+.+.+...+..
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 84 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDE 84 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhc
Confidence 58999999999999999999999999998888887 599999999999999999999965421110
Q ss_pred cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--C
Q psy14500 85 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 159 (938)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 159 (938)
..-..+++++.+.- . ....++.+++.+. ..+...|+||||+|.|. .+..+.|+..|+. .
T Consensus 85 g~~~d~~eidaas~------~--~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls--------~~a~naLLk~LEepp~ 148 (509)
T PRK14958 85 GRFPDLFEVDAASR------T--KVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS--------GHSFNALLKTLEEPPS 148 (509)
T ss_pred CCCceEEEEccccc------C--CHHHHHHHHHHHhhccccCCcEEEEEEChHhcC--------HHHHHHHHHHHhccCC
Confidence 01113555554321 1 1113555555543 12335699999999994 3567889999986 4
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
.+.+|++||.+. .+.+.+++||..++|.+++.++....++.++++ .++.++++++..++..+++.+
T Consensus 149 ~~~fIlattd~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~----egi~~~~~al~~ia~~s~Gsl----- 214 (509)
T PRK14958 149 HVKFILATTDHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE----ENVEFENAALDLLARAANGSV----- 214 (509)
T ss_pred CeEEEEEECChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcH-----
Confidence 788888888776 778889999999999999999999888888775 588999999999999998877
Q ss_pred chhhhhHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAK 253 (938)
Q Consensus 240 p~~a~~ll~~a~~~ 253 (938)
+.+..+++++++.
T Consensus 215 -R~al~lLdq~ia~ 227 (509)
T PRK14958 215 -RDALSLLDQSIAY 227 (509)
T ss_pred -HHHHHHHHHHHhc
Confidence 9999999988654
No 66
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.81 E-value=2.6e-19 Score=205.39 Aligned_cols=225 Identities=17% Similarity=0.205 Sum_probs=176.9
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHH--------hccCCCceEEeccccccc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSAC--------IFNNEESIIRIDMSEFIE 498 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~--------l~~~~~~~~~~~~~~~~~ 498 (938)
..++|++.+++.+...+...... ..++||+|++||||+.+|++|++. ..+.+.||+.+||+.+..
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s-------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e 291 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARS-------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE 291 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh
Confidence 45899999999999998765421 237999999999999999999998 566788999999999987
Q ss_pred hhhhhhhcCCCCCC-ccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEec
Q psy14500 499 KHSISRLIGAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 577 (938)
Q Consensus 499 ~~~~~~l~g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 577 (938)
....+.+||+..|. .|...+ .-.+.+..+.+++||||||+.+++..|..|+.+|+++.+...++...-..++.+|++|
T Consensus 292 ~lleseLFG~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat 370 (538)
T PRK15424 292 SLLEAELFGYEEGAFTGSRRG-GRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 370 (538)
T ss_pred hhHHHHhcCCccccccCcccc-ccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEec
Confidence 76778899987663 333221 1124566778899999999999999999999999999988766655556788999999
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
|.......+ .+.|+++|++|++. .|.+|||.+ +|+..++..++.++.... + ..++
T Consensus 371 ~~~L~~~v~-----------------~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---~--~~~~ 428 (538)
T PRK15424 371 HCDLEEDVR-----------------QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAAL---S--APFS 428 (538)
T ss_pred CCCHHHHHh-----------------cccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc---C--CCCC
Confidence 987654332 45799999999965 888999976 789999888888765433 2 2255
Q ss_pred HHHH-------HHHHhhcccccccccccccchHHHHHHH
Q psy14500 655 KAAL-------KKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 655 ~~~~-------~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
++++ +.|.. |+|+.+++.|++. +++++
T Consensus 429 ~~a~~~~~~a~~~L~~--y~WPGNvREL~nv---ier~~ 462 (538)
T PRK15424 429 AALRQGLQQCETLLLH--YDWPGNVRELRNL---MERLA 462 (538)
T ss_pred HHHHHhhHHHHHHHHh--CCCCchHHHHHHH---HHHHH
Confidence 6555 56655 8899999999999 77765
No 67
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.81 E-value=1.1e-17 Score=190.07 Aligned_cols=160 Identities=21% Similarity=0.362 Sum_probs=115.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLD 536 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lD 536 (938)
.+||+||||||||++|+++|+.+ +.+++.++++.+.+ +|+|..+. +.++...+...+||||||
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~~------------~~vGese~~l~~~f~~A~~~~P~IL~ID 325 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLFG------------GIVGESESRMRQMIRIAEALSPCILWID 325 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhcc------------cccChHHHHHHHHHHHHHhcCCcEEEeh
Confidence 69999999999999999999998 88999999876543 25565443 344455566778999999
Q ss_pred cccccCH------------HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHh
Q psy14500 537 EIEKANS------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVK 604 (938)
Q Consensus 537 Eid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~ 604 (938)
|||++.. .+++.|++.|++ ....+++|+|||...
T Consensus 326 EID~~~~~~~~~~d~~~~~rvl~~lL~~l~~-----------~~~~V~vIaTTN~~~----------------------- 371 (489)
T CHL00195 326 EIDKAFSNSESKGDSGTTNRVLATFITWLSE-----------KKSPVFVVATANNID----------------------- 371 (489)
T ss_pred hhhhhhccccCCCCchHHHHHHHHHHHHHhc-----------CCCceEEEEecCChh-----------------------
Confidence 9997632 355677777764 234578889999643
Q ss_pred hccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccc
Q psy14500 605 IYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 605 ~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
.++++++. |||.++.++.++.++..+|+...+.+.... ..++.-++.|+. ....|..+||...
T Consensus 372 -~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~--------~~~~~dl~~La~--~T~GfSGAdI~~l 436 (489)
T CHL00195 372 -LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK--------SWKKYDIKKLSK--LSNKFSGAEIEQS 436 (489)
T ss_pred -hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC--------cccccCHHHHHh--hcCCCCHHHHHHH
Confidence 36788874 999999999999999999988877653210 112223556665 2345666777765
No 68
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.81 E-value=2e-19 Score=211.82 Aligned_cols=227 Identities=19% Similarity=0.253 Sum_probs=182.1
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 505 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 505 (938)
...++|++.+++.+.+.+++... ...++||+|++||||+++|++|++...+.+.+|+.+||..+........+
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~-------~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~l 267 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVAR-------SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESEL 267 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhC-------cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHH
Confidence 35789999999999999887652 12379999999999999999999998878889999999998776666788
Q ss_pred cCCCCCC-ccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhh
Q psy14500 506 IGAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 584 (938)
Q Consensus 506 ~g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 584 (938)
||+..|. .|.... -.+.+..+.+++||||||+.+++.+|..|+.+|+++.+...++......++.+|+||+.+....
T Consensus 268 fg~~~~~~~~~~~~--~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~ 345 (534)
T TIGR01817 268 FGHEKGAFTGAIAQ--RKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEA 345 (534)
T ss_pred cCCCCCccCCCCcC--CCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHH
Confidence 9987653 232111 1233456678999999999999999999999999999887665545556788999999765433
Q ss_pred hhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCC--HHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHH
Q psy14500 585 KEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN--RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKI 661 (938)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~--~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L 661 (938)
.. .+.|+++|++|++. .|.+|||. .+|+..++..++.++..+.. ..+.+++++++.|
T Consensus 346 ~~-----------------~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~---~~~~~s~~a~~~L 405 (534)
T TIGR01817 346 VA-----------------KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENG---RPLTITPSAIRVL 405 (534)
T ss_pred HH-----------------cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcC---CCCCCCHHHHHHH
Confidence 22 56799999999975 78899997 58999999999988766443 3367999999999
Q ss_pred HhhcccccccccccccchHHHHHHH
Q psy14500 662 SNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 662 ~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
.+ |+|+.+++.|.++ +++++
T Consensus 406 ~~--~~WPGNvrEL~~v---~~~a~ 425 (534)
T TIGR01817 406 MS--CKWPGNVRELENC---LERTA 425 (534)
T ss_pred Hh--CCCCChHHHHHHH---HHHHH
Confidence 88 8899999999998 77766
No 69
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=3.2e-19 Score=202.74 Aligned_cols=202 Identities=24% Similarity=0.267 Sum_probs=153.8
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC--------------
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS-------------- 84 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~-------------- 84 (938)
.|.++|||++|+++|||+...+.|...+..+..++ +||+|||||||||+|+++|+.+.+...+..
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 58899999999999999999999999888877766 799999999999999999999854321100
Q ss_pred cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--C
Q psy14500 85 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 159 (938)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 159 (938)
.....++.++.+. ..| ...++.+...+.. .+...|+||||+|.|. .+.++.|+..++. +
T Consensus 83 g~~~dv~el~aa~------~~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt--------~~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 83 GTFMDVIELDAAS------NRG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT--------KEAFNALLKTLEEPPS 146 (472)
T ss_pred CCCCccEEEeCcc------cCC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhH--------HHHHHHHHHHHHhCCC
Confidence 0011344444321 111 1134444444431 2335699999999994 3456788888876 6
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
.+++|++|+.+. .+++++.+||..+.|.+++.++...+++..+.. .++.++++++..++..+++.+
T Consensus 147 ~vv~Ilattn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~----egi~i~~eal~~Ia~~s~Gdl----- 212 (472)
T PRK14962 147 HVVFVLATTNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAEA----EGIEIDREALSFIAKRASGGL----- 212 (472)
T ss_pred cEEEEEEeCChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCCH-----
Confidence 788888888665 789999999999999999999999999887764 578999999999999998887
Q ss_pred chhhhhHHHHHHH
Q psy14500 240 PDKAIDLIDEAAA 252 (938)
Q Consensus 240 p~~a~~ll~~a~~ 252 (938)
+.++..++.++.
T Consensus 213 -R~aln~Le~l~~ 224 (472)
T PRK14962 213 -RDALTMLEQVWK 224 (472)
T ss_pred -HHHHHHHHHHHH
Confidence 788888877654
No 70
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.81 E-value=3.7e-19 Score=195.09 Aligned_cols=228 Identities=17% Similarity=0.204 Sum_probs=178.9
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++|.+.+++.+.+.+++.... ..++||+|++||||+++|++|+....+.+.+|+.+||..+........+|
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~-------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPL-------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHc
Confidence 46889999999999998876522 23799999999999999999998887778899999999987654456788
Q ss_pred CCCCCC-ccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 507 GAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 507 g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
|+..+. .|.... ..+.+..+.+++||||||+.+++.+|..|+.++++|.+...++......++.+|+||+.....+.
T Consensus 79 g~~~~~~~g~~~~--~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~ 156 (326)
T PRK11608 79 GHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV 156 (326)
T ss_pred cccccccCCcccc--cCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHH
Confidence 876543 232221 12345677789999999999999999999999999988765554444567899999997654432
Q ss_pred hhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHH
Q psy14500 586 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 662 (938)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 662 (938)
. .+.|+++|++|+.. .|.+|||.+ +|+..++..++.++...+... +...+++++++.|.
T Consensus 157 ~-----------------~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~-~~~~~s~~al~~L~ 218 (326)
T PRK11608 157 A-----------------EGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLP-LFPGFTERARETLL 218 (326)
T ss_pred H-----------------cCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCC-CCCCCCHHHHHHHH
Confidence 2 45799999999954 899999976 789999988888875544321 11469999999998
Q ss_pred hhcccccccccccccchHHHHHHH
Q psy14500 663 NIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 663 ~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+ |+|+.+++.|.++ +++++
T Consensus 219 ~--y~WPGNvrEL~~v---l~~a~ 237 (326)
T PRK11608 219 N--YRWPGNIRELKNV---VERSV 237 (326)
T ss_pred h--CCCCcHHHHHHHH---HHHHH
Confidence 8 8899999999999 77766
No 71
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.81 E-value=3e-19 Score=205.41 Aligned_cols=225 Identities=18% Similarity=0.236 Sum_probs=180.3
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++|++.+++.+...++..... ..++||+|++||||+.+|++|++...+.+.||+.+||..+......+.+|
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~-------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLF 284 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARS-------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELF 284 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhc
Confidence 45889999999999998765422 23799999999999999999999887888999999999998766677899
Q ss_pred CCCCCC-ccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 507 GAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 507 g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
|+..|. .|.... ...+.+..+.+++||||||+.+++.+|..|+.+|+++.+...++......++.+|++||.......
T Consensus 285 G~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v 363 (526)
T TIGR02329 285 GYEEGAFTGARRG-GRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAV 363 (526)
T ss_pred CCccccccccccc-ccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHh
Confidence 987663 333211 123456677889999999999999999999999999988876655555567889999998665433
Q ss_pred hhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHH--
Q psy14500 586 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKK-- 660 (938)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~-- 660 (938)
. .+.|+++|++|++. .|.+|||.+ +|+..++..++.++.... + +.+++++++.
T Consensus 364 ~-----------------~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---~--~~~~~~a~~~~~ 421 (526)
T TIGR02329 364 Q-----------------QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL---R--LPDSEAAAQVLA 421 (526)
T ss_pred h-----------------hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc---C--CCCCHHHHHHhH
Confidence 2 45799999999964 899999976 799999999988876533 2 3488888887
Q ss_pred -----HHhhcccccccccccccchHHHHHHH
Q psy14500 661 -----ISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 661 -----L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
|.+ |+|+.+++.|.+. +++++
T Consensus 422 ~~~~~L~~--y~WPGNvrEL~nv---ier~~ 447 (526)
T TIGR02329 422 GVADPLQR--YPWPGNVRELRNL---VERLA 447 (526)
T ss_pred HHHHHHHh--CCCCchHHHHHHH---HHHHH
Confidence 766 8899999999998 77665
No 72
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.81 E-value=2.9e-19 Score=175.43 Aligned_cols=163 Identities=20% Similarity=0.314 Sum_probs=128.1
Q ss_pred ccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCC
Q psy14500 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 508 (938)
Q Consensus 429 viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 508 (938)
++|.+.+++.+.+.++..... ..++|++|++||||+.+|++|++...+...||+.+||+.+........+||.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~-------~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS-------DLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS-------TS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCC-------CCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 579999999999999876522 1479999999999999999999999888899999999999888777899998
Q ss_pred CCCC-ccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhh
Q psy14500 509 PPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 587 (938)
Q Consensus 509 ~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 587 (938)
..+. .|.... -.+.+..+.+|+||||||+.+++.+|..|+++|+++.+...++......++.+|+||+.+...+.+
T Consensus 74 ~~~~~~~~~~~--~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~- 150 (168)
T PF00158_consen 74 EKGAFTGARSD--KKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVE- 150 (168)
T ss_dssp CSSSSTTTSSE--BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHH-
T ss_pred ccccccccccc--cCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHH-
Confidence 7653 232221 237888999999999999999999999999999999998877666666799999999987765544
Q ss_pred hcchHHHHHHHHHHHHhhccChHHhhcCCe
Q psy14500 588 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD 617 (938)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~ 617 (938)
.+.|+++|++|+..
T Consensus 151 ----------------~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 151 ----------------QGRFREDLYYRLNV 164 (168)
T ss_dssp ----------------TTSS-HHHHHHHTT
T ss_pred ----------------cCCChHHHHHHhce
Confidence 56899999999963
No 73
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.81 E-value=5e-19 Score=181.93 Aligned_cols=225 Identities=17% Similarity=0.260 Sum_probs=189.3
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 505 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 505 (938)
++.+++++..++.+....++.... ..++|+.|.+||||..+|++.+...-+...||+.+||+.+......+++
T Consensus 203 F~~~v~~S~~mk~~v~qA~k~Aml-------DAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsEl 275 (511)
T COG3283 203 FEQIVAVSPKMKHVVEQAQKLAML-------DAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESEL 275 (511)
T ss_pred hHHHhhccHHHHHHHHHHHHhhcc-------CCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHH
Confidence 456788888888888777665422 2369999999999999999999999888999999999999999999999
Q ss_pred cCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 506 IGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 506 ~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
||+.+|-.| -.++++.+.+|.+|+|||..|+|..|..||.+|.+|.|...++..--+-++.+|+||..+...+.
T Consensus 276 FG~apg~~g------k~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv 349 (511)
T COG3283 276 FGHAPGDEG------KKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELV 349 (511)
T ss_pred hcCCCCCCC------ccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHH
Confidence 999887222 23577888999999999999999999999999999999987765556678999999998777665
Q ss_pred hhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHH
Q psy14500 586 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 662 (938)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 662 (938)
+ +..|+.++++|++. .+.+||+.+ +++..+.+.++.++.+++.--. ..++++++.+|.
T Consensus 350 ~-----------------~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~--pkl~~~~~~~L~ 410 (511)
T COG3283 350 Q-----------------KGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVPR--PKLAADLLTVLT 410 (511)
T ss_pred h-----------------cCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCCC--CccCHHHHHHHH
Confidence 5 67899999999986 788888866 7899999998888877665332 679999999998
Q ss_pred hhcccccccccccccchHHHHHHHH
Q psy14500 663 NIGFDLIYGARDVHGCKKSLSILLK 687 (938)
Q Consensus 663 ~~~~~~~~~~~dl~~~~~~l~~~l~ 687 (938)
+ |.|+.++|.+.+. +-+++.
T Consensus 411 ~--y~WpGNVRqL~N~---iyRA~s 430 (511)
T COG3283 411 R--YAWPGNVRQLKNA---IYRALT 430 (511)
T ss_pred H--cCCCccHHHHHHH---HHHHHH
Confidence 7 8888889999888 777774
No 74
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=4.7e-19 Score=181.15 Aligned_cols=248 Identities=25% Similarity=0.416 Sum_probs=178.9
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHhhhcCCC------CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14500 419 LNIENLLCKRVVGQDEAISAVSNAIRRSRSGLS------DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 492 (938)
Q Consensus 419 ~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~------~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 492 (938)
.++-.+|++.|+||+.|++.+.-+++....... +--.|. ++|+.||+|+|||.+||.||+.. +.||+.+.
T Consensus 7 reIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PK-NILMIGpTGVGKTEIARRLAkl~---~aPFiKVE 82 (444)
T COG1220 7 REIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLA---GAPFIKVE 82 (444)
T ss_pred HHHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCcc-ceEEECCCCCcHHHHHHHHHHHh---CCCeEEEE
Confidence 345667889999999999999999854321111 112343 89999999999999999999998 88999887
Q ss_pred cccccch----------------------------------------hhhhhhcCCCCCCccccc---------------
Q psy14500 493 MSEFIEK----------------------------------------HSISRLIGAPPGYIGYEE--------------- 517 (938)
Q Consensus 493 ~~~~~~~----------------------------------------~~~~~l~g~~~~~~g~~~--------------- 517 (938)
.+.|+.- .-+..|++......|..+
T Consensus 83 ATKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkk 162 (444)
T COG1220 83 ATKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKK 162 (444)
T ss_pred eeeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHH
Confidence 7776321 011122232211111000
Q ss_pred ---------------------------------c-chh-----------------------------------------H
Q psy14500 518 ---------------------------------G-GYL-----------------------------------------T 522 (938)
Q Consensus 518 ---------------------------------~-~~l-----------------------------------------~ 522 (938)
. ..+ .
T Consensus 163 Lr~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~ 242 (444)
T COG1220 163 LREGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQ 242 (444)
T ss_pred HHcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHH
Confidence 0 000 0
Q ss_pred HHH-HhCCCEEEEEccccccC------------HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhc
Q psy14500 523 EIV-RRKPYSLILLDEIEKAN------------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 589 (938)
Q Consensus 523 ~~~-~~~~~~vl~lDEid~~~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~ 589 (938)
.++ +....||+|||||||+. ..+|.-||+++|...+....| .+...+.+||++..+....-.
T Consensus 243 eAi~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG-~VkTdHILFIasGAFh~sKPS---- 317 (444)
T COG1220 243 EAIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYG-PVKTDHILFIASGAFHVAKPS---- 317 (444)
T ss_pred HHHHHHHhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccc-ccccceEEEEecCceecCChh----
Confidence 011 11226999999999864 368999999999655554444 356677888887765433221
Q ss_pred chHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH----HHHHHHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 590 GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 590 ~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
.+.|+|.+||+..|.+.+|+.+++.+|+. ..+.++...++..++.+.|++++++.|+...
T Consensus 318 ----------------DLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA 381 (444)
T COG1220 318 ----------------DLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIA 381 (444)
T ss_pred ----------------hcChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHH
Confidence 26799999999999999999999999997 6677788888889999999999999999977
Q ss_pred cc-----ccccccccccchHHHHHHHHHhcccCC
Q psy14500 666 FD-----LIYGARDVHGCKKSLSILLKKIHKKSP 694 (938)
Q Consensus 666 ~~-----~~~~~~dl~~~~~~l~~~l~~~~~~~~ 694 (938)
|. .+.|+|-||.. ++++|+.+.|..+
T Consensus 382 ~~vN~~~ENIGARRLhTv---lErlLediSFeA~ 412 (444)
T COG1220 382 YQVNEKTENIGARRLHTV---LERLLEDISFEAP 412 (444)
T ss_pred HHhcccccchhHHHHHHH---HHHHHHHhCccCC
Confidence 74 66899999999 9999999999765
No 75
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.80 E-value=2.6e-19 Score=188.86 Aligned_cols=189 Identities=17% Similarity=0.284 Sum_probs=138.9
Q ss_pred ccccChHHHH---HHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAI---SAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~---~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.++||++.+ +.+.+++.... .++++||||||||||++|+.||... +..|..++...-
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~---------l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~~------- 84 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGH---------LHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVTS------- 84 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCC---------CceeEEECCCCCCHHHHHHHHHHhh---CCceEEeccccc-------
Confidence 4578999988 56666776444 3489999999999999999999988 677777765421
Q ss_pred hhcCCCCCCccccccchhHHHH----HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCC
Q psy14500 504 RLIGAPPGYIGYEEGGYLTEIV----RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 579 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~~~l~~~~----~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 579 (938)
|..+.+.+.+.. .....-|||+|||++++...|+.||..+|+|.++ +|.+|+-
T Consensus 85 ----------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~ii-------------lIGATTE 141 (436)
T COG2256 85 ----------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTII-------------LIGATTE 141 (436)
T ss_pred ----------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEE-------------EEeccCC
Confidence 122222232222 1123579999999999999999999999997644 6665554
Q ss_pred CchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHH
Q psy14500 580 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 659 (938)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 659 (938)
.+. ..+.+++++|+ .++.|.|++.+++.+++.+.+......+.. ..+.+++++++
T Consensus 142 NPs----------------------F~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~~--~~~~i~~~a~~ 196 (436)
T COG2256 142 NPS----------------------FELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLGG--QIIVLDEEALD 196 (436)
T ss_pred CCC----------------------eeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCCc--ccccCCHHHHH
Confidence 332 13678999999 599999999999999988865544433332 33669999999
Q ss_pred HHHhhcccccccccccccchHHHHHHHHH
Q psy14500 660 KISNIGFDLIYGARDVHGCKKSLSILLKK 688 (938)
Q Consensus 660 ~L~~~~~~~~~~~~dl~~~~~~l~~~l~~ 688 (938)
+|+. ...||.+..++.++-+...
T Consensus 197 ~l~~------~s~GD~R~aLN~LE~~~~~ 219 (436)
T COG2256 197 YLVR------LSNGDARRALNLLELAALS 219 (436)
T ss_pred HHHH------hcCchHHHHHHHHHHHHHh
Confidence 9998 4468888887777776643
No 76
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=6.2e-19 Score=201.89 Aligned_cols=204 Identities=19% Similarity=0.210 Sum_probs=158.1
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCC---CC----------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVP---NS---------- 84 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p---~~---------- 84 (938)
..|+++|||.+|+++|||+.+++.|...+..++.+| +||+||+||||||+|+.+|+.+.+.... ..
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 369999999999999999999999999998877766 6899999999999999999988652110 00
Q ss_pred -cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--
Q psy14500 85 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 158 (938)
Q Consensus 85 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 158 (938)
.....++.++... ..| ...++.++..+. ..+...|+||||+|.|. .+.++.|+..+|.
T Consensus 84 ~~~~~dlieidaas------~~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------~~a~naLLK~LEepp 147 (546)
T PRK14957 84 NNSFIDLIEIDAAS------RTG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------KQSFNALLKTLEEPP 147 (546)
T ss_pred cCCCCceEEeeccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------HHHHHHHHHHHhcCC
Confidence 0011344443311 111 113444544443 22346799999999993 3578899999987
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
+.+++|++|+... .+.+++++||..++|.+++.++....++.++.+ .++.+++.++..++..+++.+
T Consensus 148 ~~v~fIL~Ttd~~-----kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~----egi~~e~~Al~~Ia~~s~Gdl---- 214 (546)
T PRK14957 148 EYVKFILATTDYH-----KIPVTILSRCIQLHLKHISQADIKDQLKIILAK----ENINSDEQSLEYIAYHAKGSL---- 214 (546)
T ss_pred CCceEEEEECChh-----hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 4788888887765 677889999999999999999999998887776 578999999999999999888
Q ss_pred CchhhhhHHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAAK 253 (938)
Q Consensus 239 ~p~~a~~ll~~a~~~ 253 (938)
+.++.+++.++..
T Consensus 215 --R~alnlLek~i~~ 227 (546)
T PRK14957 215 --RDALSLLDQAISF 227 (546)
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999988764
No 77
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.80 E-value=8.2e-19 Score=185.38 Aligned_cols=170 Identities=16% Similarity=0.214 Sum_probs=130.5
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh----cCCC
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN----NQKD 125 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~----~~~~ 125 (938)
..+..++|+||||||||.+|+++|+++ +..++.++.+.+. ++|.|+.++.++.+|..|.. ...|
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~--sk~vGEsEk~IR~~F~~A~~~a~~~~aP 213 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELE--SENAGEPGKLIRQRYREAADIIKKKGKM 213 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhh--cCcCCcHHHHHHHHHHHHHHHhhccCCC
Confidence 555678999999999999999999999 8899999999998 67999999999999999874 3579
Q ss_pred eEEEEeCccccccCCCCCCcc---c-hhhhhhhhcc----------------CCceEEEEecChhHHHHhhhcCHHHHc-
Q psy14500 126 IIIFIDELHTMIGTGKVEGSI---D-AGNMLKPELS----------------RGELHCIGATTLNEYRQYIEKDAAFER- 184 (938)
Q Consensus 126 ~iL~iDEid~l~~~~~~~~~~---~-~~~~L~~~l~----------------~~~i~vI~~tn~~~~~~~~~ld~al~~- 184 (938)
|||||||||.+++.+.+.... . +...|...++ ...+.||+|||.++ .+|++|+|
T Consensus 214 cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpALlRp 288 (413)
T PLN00020 214 SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPLIRD 288 (413)
T ss_pred eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhHcCC
Confidence 999999999999876532211 1 1234444432 34689999999998 89999999
Q ss_pred -ccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHH
Q psy14500 185 -RFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 185 -Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 252 (938)
||+.+ +..|+.++|..||+.+.+. ..++...+..++. .| |..++++.-...+
T Consensus 289 GRfDk~-i~lPd~e~R~eIL~~~~r~------~~l~~~dv~~Lv~---~f------~gq~~Df~GAlra 341 (413)
T PLN00020 289 GRMEKF-YWAPTREDRIGVVHGIFRD------DGVSREDVVKLVD---TF------PGQPLDFFGALRA 341 (413)
T ss_pred CCCCce-eCCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHH---cC------CCCCchhhhHHHH
Confidence 99973 4689999999999988775 2455555554444 33 3555665544433
No 78
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.80 E-value=1.1e-18 Score=173.33 Aligned_cols=181 Identities=18% Similarity=0.345 Sum_probs=118.4
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 505 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 505 (938)
.++++||++.+..+...++.... ...+..++||+||||+|||++|+.||+.+ +.++..++.+.+...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~----r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k~------ 89 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK----RGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEKA------ 89 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC----TTS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--SC------
T ss_pred HHHccCcHHHHhhhHHHHHHHHh----cCCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhhH------
Confidence 36789999999998888776542 12345689999999999999999999999 667766655433221
Q ss_pred cCCCCCCccccccchhHHHH-HhCCCEEEEEccccccCHHHHHHHHHhhcCCceec--CCC-----ceeecCCeEEEEec
Q psy14500 506 IGAPPGYIGYEEGGYLTEIV-RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD--NRG-----RTINFRNTIIVMTS 577 (938)
Q Consensus 506 ~g~~~~~~g~~~~~~l~~~~-~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~--~~g-----~~~~~~~~iiI~tt 577 (938)
+.+...+ ...++.|||||||+++++.+|+.|+..||+|.+.. +.| ..++.....+|.+|
T Consensus 90 -------------~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 90 -------------GDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp -------------HHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred -------------HHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 1122222 22456799999999999999999999999999752 322 34455677777777
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHH
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 657 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 657 (938)
+. .+.++++|.+||..+..+..++.+++.+|+.+... . ..+.+++++
T Consensus 157 Tr------------------------~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~-------~--l~i~i~~~~ 203 (233)
T PF05496_consen 157 TR------------------------AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR-------I--LNIEIDEDA 203 (233)
T ss_dssp SS------------------------GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCH-------C--TT-EE-HHH
T ss_pred cc------------------------ccccchhHHhhcceecchhcCCHHHHHHHHHHHHH-------H--hCCCcCHHH
Confidence 64 23478999999987789999999999999654322 2 238899999
Q ss_pred HHHHHhhc
Q psy14500 658 LKKISNIG 665 (938)
Q Consensus 658 ~~~L~~~~ 665 (938)
...|+..+
T Consensus 204 ~~~Ia~rs 211 (233)
T PF05496_consen 204 AEEIARRS 211 (233)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHhc
Confidence 99999854
No 79
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.80 E-value=7.3e-20 Score=186.97 Aligned_cols=122 Identities=23% Similarity=0.444 Sum_probs=92.8
Q ss_pred ccccccccchHHHHHHHHHhcc-------cCCccccccccccCCCCeeEehhHHHHHhcC-------CccEEEcCCChHH
Q psy14500 670 YGARDVHGCKKSLSILLKKIHK-------KSPEANFIFLGDLINKGPQSLDTLRMVYSMR-------NYAKIVLGNHEIH 735 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~-------~~~~~~li~~GD~~drg~~~~~v~~~~~~~~-------~~~~~v~GNHe~~ 735 (938)
+.++||||++++|.++|+.+++ ....+.++++||++|+||.+.+|+++++++. .++++|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 4689999999999999998875 3467899999999999999999999999884 3588999999999
Q ss_pred HHHHHhccccCCccccHH-----HhhCCCCHHHHHHHHhcCCceEEeCCEEEEecccCcCC
Q psy14500 736 LLDVLININKKSKLDTFD-----DILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQW 791 (938)
Q Consensus 736 ~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~lp~~~~~~~~~~vHAg~~p~~ 791 (938)
++................ .........++.+||+++|+++..++++|||||+.|.|
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~~~~fvHag~~~~w 141 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVNDTLFVHGGLGPLW 141 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEECCEEEEeCCcHHHH
Confidence 986332111111111111 11111234678999999999999999999999996644
No 80
>CHL00181 cbbX CbbX; Provisional
Probab=99.80 E-value=7.6e-19 Score=188.16 Aligned_cols=216 Identities=17% Similarity=0.301 Sum_probs=150.8
Q ss_pred HHHHHHHHHhhccccChHHHHHHHHHHHHh-------hhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC----
Q psy14500 416 EKLLNIENLLCKRVVGQDEAISAVSNAIRR-------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN---- 484 (938)
Q Consensus 416 ~~l~~l~~~l~~~viGq~~~~~~l~~~l~~-------~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~---- 484 (938)
..+.++.+.|.+.++|++.+++.+...+.. ...++..+.. ..+++|+||||||||++|+++|+.++..
T Consensus 12 ~~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~-~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~ 90 (287)
T CHL00181 12 TQIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNP-GLHMSFTGSPGTGKTTVALKMADILYKLGYIK 90 (287)
T ss_pred cCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CceEEEECCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 346778888999999999999888766421 2344444433 3479999999999999999999988542
Q ss_pred CCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEcccccc---------CHHHHHHHHHhhcC
Q psy14500 485 EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKA---------NSDVFNILLQILDD 555 (938)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~---------~~~~~~~Ll~~le~ 555 (938)
..+++.++.+++... |+|.... .....++.+.++||||||++.+ ++++++.|++.|++
T Consensus 91 ~~~~~~v~~~~l~~~------------~~g~~~~-~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~ 157 (287)
T CHL00181 91 KGHLLTVTRDDLVGQ------------YIGHTAP-KTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMEN 157 (287)
T ss_pred CCceEEecHHHHHHH------------HhccchH-HHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhc
Confidence 235777776554321 3343322 2345667777899999999986 57889999999986
Q ss_pred CceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHH
Q psy14500 556 GRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI 635 (938)
Q Consensus 556 g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~ 635 (938)
+ ..++++|++++.... .. .....|+|.+||+.+|.|+|++.+++.+|+..
T Consensus 158 ~-----------~~~~~vI~ag~~~~~--~~-----------------~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~ 207 (287)
T CHL00181 158 Q-----------RDDLVVIFAGYKDRM--DK-----------------FYESNPGLSSRIANHVDFPDYTPEELLQIAKI 207 (287)
T ss_pred C-----------CCCEEEEEeCCcHHH--HH-----------------HHhcCHHHHHhCCceEEcCCcCHHHHHHHHHH
Confidence 2 245677777764211 00 11246999999999999999999999999888
Q ss_pred HHHHHHHHHHccCCeEEEcHH----HHHHHHhhccccccc-ccccccchHHHHHHHH
Q psy14500 636 QLNILKNKLLKMNMDLKISKA----ALKKISNIGFDLIYG-ARDVHGCKKSLSILLK 687 (938)
Q Consensus 636 ~l~~~~~~~~~~~~~l~~~~~----~~~~L~~~~~~~~~~-~~dl~~~~~~l~~~l~ 687 (938)
++.+.. ..++++ +++++.+..+.+.+| +|+++++ +++++.
T Consensus 208 ~l~~~~---------~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~---ve~~~~ 252 (287)
T CHL00181 208 MLEEQQ---------YQLTPEAEKALLDYIKKRMEQPLFANARSVRNA---LDRARM 252 (287)
T ss_pred HHHHhc---------CCCChhHHHHHHHHHHHhCCCCCCccHHHHHHH---HHHHHH
Confidence 877642 223444 445555445555556 8999998 666553
No 81
>KOG0728|consensus
Probab=99.80 E-value=2.6e-19 Score=175.20 Aligned_cols=180 Identities=22% Similarity=0.343 Sum_probs=144.0
Q ss_pred HHHHHhcCCCCCccccHHHHHHHHHHH-------------hcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCC
Q psy14500 21 LTEKARLGKLDPVIGRDDEIRRAIQVL-------------QRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLS 87 (938)
Q Consensus 21 l~~~~~~~~~~~lvG~~~~~~~l~~~l-------------~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~ 87 (938)
.+++.+..+++=+=|-+..++++.+.+ .-..+.++|||||||||||.||+++|... .
T Consensus 137 mVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht----------~ 206 (404)
T KOG0728|consen 137 MVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------D 206 (404)
T ss_pred hhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc----------c
Confidence 455544444444444555666655543 23556789999999999999999999987 8
Q ss_pred CeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCC---CCCccchhhhhhhhcc-------
Q psy14500 88 KKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK---VEGSIDAGNMLKPELS------- 157 (938)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~---~~~~~~~~~~L~~~l~------- 157 (938)
|.++.++-+.++ .+|.|+....++.+|--++.+. |+|+|+||||++..++. ++++.+++..++.++.
T Consensus 207 c~firvsgselv--qk~igegsrmvrelfvmareha-psiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea 283 (404)
T KOG0728|consen 207 CTFIRVSGSELV--QKYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA 283 (404)
T ss_pred eEEEEechHHHH--HHHhhhhHHHHHHHHHHHHhcC-CceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc
Confidence 999999999998 5789999989999999988654 89999999999977643 3345667777777773
Q ss_pred CCceEEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCC
Q psy14500 158 RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEI 218 (938)
Q Consensus 158 ~~~i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i 218 (938)
..++.+|.+||+.+ -+||+++| |++. |+||+|+.+.|..||+-...+.++..|+++
T Consensus 284 tknikvimatnrid-----ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l 342 (404)
T KOG0728|consen 284 TKNIKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL 342 (404)
T ss_pred ccceEEEEeccccc-----cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH
Confidence 46899999999998 79999999 9986 999999999999999988888777777654
No 82
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.80 E-value=1.7e-18 Score=194.38 Aligned_cols=201 Identities=23% Similarity=0.309 Sum_probs=152.7
Q ss_pred cCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 27 LGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 27 ~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
.-+++++.|.+++++.+...+. -..+.++||+||||||||++|+++|+.+ +..++.+
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v 196 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRV 196 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEe
Confidence 3467789999999888887653 1456789999999999999999999998 6788889
Q ss_pred ehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC---ccchhhhhhhhc-------cCCceEE
Q psy14500 94 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDAGNMLKPEL-------SRGELHC 163 (938)
Q Consensus 94 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~l-------~~~~i~v 163 (938)
+++.+. ..+.|+.+..++.+|..+.. ..|+||||||+|.+.+.+...+ +.+.+..+..++ ..+++.+
T Consensus 197 ~~~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 197 VGSELV--QKFIGEGARLVRELFELARE-KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred ehHHHh--HhhccchHHHHHHHHHHHHh-cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 888876 45778888889999988874 4588999999999986654322 223344444443 2357999
Q ss_pred EEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCc
Q psy14500 164 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 240 (938)
Q Consensus 164 I~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 240 (938)
|+|||.++ .+|+++++ ||+. |+|+.|+.++|..||+.+........+ ..+..++..+.+|. +
T Consensus 274 I~aTn~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~-----~~~~~la~~t~g~s-----g 338 (389)
T PRK03992 274 IAATNRID-----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD-----VDLEELAELTEGAS-----G 338 (389)
T ss_pred EEecCChh-----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc-----CCHHHHHHHcCCCC-----H
Confidence 99999998 89999998 9986 999999999999999987765432222 23556667665544 6
Q ss_pred hhhhhHHHHHHHHHH
Q psy14500 241 DKAIDLIDEAAAKIK 255 (938)
Q Consensus 241 ~~a~~ll~~a~~~~~ 255 (938)
+....++.+|+..+.
T Consensus 339 adl~~l~~eA~~~a~ 353 (389)
T PRK03992 339 ADLKAICTEAGMFAI 353 (389)
T ss_pred HHHHHHHHHHHHHHH
Confidence 677777777766543
No 83
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.80 E-value=5e-19 Score=177.85 Aligned_cols=193 Identities=24% Similarity=0.347 Sum_probs=148.4
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHh-----cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQ-----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~-----~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
......||+.|+++|||+++.+++.-++. ....-|+||+||||.||||||+.+|+++ +..+-..+
T Consensus 15 ~~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~ts 84 (332)
T COG2255 15 KIERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKITS 84 (332)
T ss_pred hhhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEecc
Confidence 34556799999999999999998887765 2444689999999999999999999999 54444333
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC----------------
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---------------- 158 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---------------- 158 (938)
...+.. .| .+-.++..+...+ ||||||||+|.+ .+-+.|-+.||+
T Consensus 85 Gp~leK----~g----DlaaiLt~Le~~D---VLFIDEIHrl~~--------~vEE~LYpaMEDf~lDI~IG~gp~Arsv 145 (332)
T COG2255 85 GPALEK----PG----DLAAILTNLEEGD---VLFIDEIHRLSP--------AVEEVLYPAMEDFRLDIIIGKGPAARSI 145 (332)
T ss_pred cccccC----hh----hHHHHHhcCCcCC---eEEEehhhhcCh--------hHHHHhhhhhhheeEEEEEccCCccceE
Confidence 322221 12 3455555554333 999999999955 344566666643
Q ss_pred ----CceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhc
Q psy14500 159 ----GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 233 (938)
Q Consensus 159 ----~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 233 (938)
..+.+|+|||+.. .+..+|++||.. ..+..++.++...|+.+-... .++++++++...+++.|
T Consensus 146 ~ldLppFTLIGATTr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~----l~i~i~~~~a~eIA~rS--- 213 (332)
T COG2255 146 RLDLPPFTLIGATTRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI----LGIEIDEEAALEIARRS--- 213 (332)
T ss_pred eccCCCeeEeeeccccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH----hCCCCChHHHHHHHHhc---
Confidence 2567899999998 889999999996 889999999999999866654 58899999999999876
Q ss_pred cccCCCchhhhhHHHHHHHHHHH
Q psy14500 234 ISDRFMPDKAIDLIDEAAAKIKI 256 (938)
Q Consensus 234 ~~~~~~p~~a~~ll~~a~~~~~~ 256 (938)
++.|+-|.++|......+..
T Consensus 214 ---RGTPRIAnRLLrRVRDfa~V 233 (332)
T COG2255 214 ---RGTPRIANRLLRRVRDFAQV 233 (332)
T ss_pred ---cCCcHHHHHHHHHHHHHHHH
Confidence 55789999999887665543
No 84
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.80 E-value=2.9e-19 Score=193.99 Aligned_cols=230 Identities=17% Similarity=0.267 Sum_probs=179.9
Q ss_pred HHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-CCCceEEeccccccchhh
Q psy14500 423 NLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-NEESIIRIDMSEFIEKHS 501 (938)
Q Consensus 423 ~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~-~~~~~~~~~~~~~~~~~~ 501 (938)
......+||.+...+.+.+.++... |.. .++|+.|++||||+.+|++|+...-+ ...||+.+||+.|.....
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~a-----p~~--~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~ 146 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYA-----PSG--LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQ 146 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhC-----CCC--CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHH
Confidence 3445778999999999999998632 111 27999999999999999999966655 588999999999999988
Q ss_pred hhhhcCCCCC-CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCC
Q psy14500 502 ISRLIGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG 580 (938)
Q Consensus 502 ~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~ 580 (938)
...+||+..| +.|.... -.+.+..+.+|+||+|||..+++..|..|+.+||+|.++..++......++.+|++||..
T Consensus 147 ~~eLFG~~kGaftGa~~~--k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~ 224 (403)
T COG1221 147 EAELFGHEKGAFTGAQGG--KAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTED 224 (403)
T ss_pred HHHHhccccceeecccCC--cCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccC
Confidence 8889999888 5563322 346778889999999999999999999999999999999888777788899999999975
Q ss_pred chhhhhhhcchHHHHHHHHHHHHhhccChHHhh-cCCeEEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEE-cHH
Q psy14500 581 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN-RIDDIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKI-SKA 656 (938)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~-R~~~~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~-~~~ 656 (938)
.... +..+ .+|.+ |+..+|.+||+.+ +|+..++..++..++.++ +..+.. +++
T Consensus 225 l~~~------------------~~~g--~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l---~~~~~~~~~~ 281 (403)
T COG1221 225 LEEA------------------VLAG--ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRL---GLPLSVDSPE 281 (403)
T ss_pred HHHH------------------HHhh--cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHc---CCCCCCCCHH
Confidence 5422 1111 47887 5666999999977 556666666666555444 444433 358
Q ss_pred HHHHHHhhcccccccccccccchHHHHHHHHHh
Q psy14500 657 ALKKISNIGFDLIYGARDVHGCKKSLSILLKKI 689 (938)
Q Consensus 657 ~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~ 689 (938)
++..|.. |+|+.++|.+++. +++++...
T Consensus 282 a~~~L~~--y~~pGNirELkN~---Ve~~~~~~ 309 (403)
T COG1221 282 ALRALLA--YDWPGNIRELKNL---VERAVAQA 309 (403)
T ss_pred HHHHHHh--CCCCCcHHHHHHH---HHHHHHHh
Confidence 8999877 8899999999998 77776443
No 85
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.80 E-value=7.1e-19 Score=204.98 Aligned_cols=227 Identities=19% Similarity=0.242 Sum_probs=182.7
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
..++|++..++.+...++..... ..++||+|++||||+++|++|+....+.+.+|+.+||..+......+.+|
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~-------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lf 259 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAAS-------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELF 259 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCC-------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhc
Confidence 56899999999999999876522 23799999999999999999999988788899999999987765567889
Q ss_pred CCCCC-CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 507 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 507 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
|+..| +.|.... -.+.+..+.+++||||||+.+++.+|..|+.+|+++.+...++......++.+|++||.......
T Consensus 260 G~~~g~~~ga~~~--~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~ 337 (509)
T PRK05022 260 GHVKGAFTGAISN--RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEV 337 (509)
T ss_pred CccccccCCCccc--CCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHH
Confidence 97655 2332211 12335567789999999999999999999999999988766555555578899999998665432
Q ss_pred hhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHH
Q psy14500 586 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 662 (938)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 662 (938)
. .+.|+++|++|+.. .|.+|||.+ +|+..++..++.++..++.... +.+++++++.|.
T Consensus 338 ~-----------------~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~--~~~s~~a~~~L~ 398 (509)
T PRK05022 338 R-----------------AGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRS--LRLSPAAQAALL 398 (509)
T ss_pred H-----------------cCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCC--CCCCHHHHHHHH
Confidence 2 45799999999975 689999976 7899999888888766554332 679999999998
Q ss_pred hhcccccccccccccchHHHHHHH
Q psy14500 663 NIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 663 ~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+ |+|+.+++.|.++ +++++
T Consensus 399 ~--y~WPGNvrEL~~~---i~ra~ 417 (509)
T PRK05022 399 A--YDWPGNVRELEHV---ISRAA 417 (509)
T ss_pred h--CCCCCcHHHHHHH---HHHHH
Confidence 8 8899999999999 77766
No 86
>KOG0991|consensus
Probab=99.80 E-value=5e-20 Score=178.66 Aligned_cols=208 Identities=18% Similarity=0.246 Sum_probs=159.6
Q ss_pred HHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 15 KKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
.++..+|+|||||..+.++||.++.+.++..+...+..+|++|.|||||||||.+.++|+++..... .-.+.+++
T Consensus 11 ~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-----ke~vLELN 85 (333)
T KOG0991|consen 11 DKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-----KEAVLELN 85 (333)
T ss_pred ccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-----hhHhhhcc
Confidence 4566679999999999999999999999999999999999999999999999999999999843211 22344555
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhc--CCCeEEEEeCccccccCCCCCCccchhhhhhhhcc--CCceEEEEecChh
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNN--QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS--RGELHCIGATTLN 170 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~--~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~i~vI~~tn~~ 170 (938)
.++-.+ ..-....++.+-+.-... +.-.|+++||+|+|. ..++.+|+..|| ++..+++.+||..
T Consensus 86 ASdeRG----IDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT--------~gAQQAlRRtMEiyS~ttRFalaCN~s 153 (333)
T KOG0991|consen 86 ASDERG----IDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMT--------AGAQQALRRTMEIYSNTTRFALACNQS 153 (333)
T ss_pred Cccccc----cHHHHHHHHHHHHhhccCCCCceeEEEeeccchhh--------hHHHHHHHHHHHHHcccchhhhhhcch
Confidence 543221 111222333322221111 122499999999993 346667888886 5778999999998
Q ss_pred HHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHH
Q psy14500 171 EYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 171 ~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 250 (938)
+ ++-+++.+||..+++...+..+...-+..+.+. +++.++++.+++++..+.++. +.+...|...
T Consensus 154 ~-----KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~----Ekv~yt~dgLeaiifta~GDM------RQalNnLQst 218 (333)
T KOG0991|consen 154 E-----KIIEPIQSRCAILRYSKLSDQQILKRLLEVAKA----EKVNYTDDGLEAIIFTAQGDM------RQALNNLQST 218 (333)
T ss_pred h-----hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHH----hCCCCCcchHHHhhhhccchH------HHHHHHHHHH
Confidence 8 888999999999999999999888777776664 689999999999999999998 8888888776
Q ss_pred HHHH
Q psy14500 251 AAKI 254 (938)
Q Consensus 251 ~~~~ 254 (938)
.+..
T Consensus 219 ~~g~ 222 (333)
T KOG0991|consen 219 VNGF 222 (333)
T ss_pred hccc
Confidence 5543
No 87
>KOG0737|consensus
Probab=99.80 E-value=3e-19 Score=186.59 Aligned_cols=182 Identities=25% Similarity=0.388 Sum_probs=148.8
Q ss_pred CCCCccccHHHHHHHHHHHh--------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQ--------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~--------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
+|+++=|-+.++..+.+.+- -.++.+|||+||||||||.+|+++|++. ++.++.+.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~ 159 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVS 159 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCcceee
Confidence 78888888888887777432 2456789999999999999999999998 88999999
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhc--------c--CCceEEE
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL--------S--RGELHCI 164 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l--------~--~~~i~vI 164 (938)
.+.+. ++|.|+.++.++.+|.-+.. -.|+|+||||+|.++..+ ..+.+++...++... . +..|.|+
T Consensus 160 ~s~lt--~KWfgE~eKlv~AvFslAsK-l~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 160 VSNLT--SKWFGEAQKLVKAVFSLASK-LQPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred ccccc--hhhHHHHHHHHHHHHhhhhh-cCcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 98888 48999999999999998874 459999999999999888 455566666555433 2 2359999
Q ss_pred EecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 165 GATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 165 ~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
||||++. .+|.++.||+.. +.++.|+.++|.+||+-+++.-... ++-.+..++.++.||-
T Consensus 236 gATNRP~-----DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-----~~vD~~~iA~~t~GyS 296 (386)
T KOG0737|consen 236 GATNRPF-----DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-----DDVDLDEIAQMTEGYS 296 (386)
T ss_pred eCCCCCc-----cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-----cccCHHHHHHhcCCCc
Confidence 9999998 999999999985 9999999999999999888753222 3345677888888876
No 88
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.2e-18 Score=201.33 Aligned_cols=203 Identities=19% Similarity=0.177 Sum_probs=159.0
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC--------------
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS-------------- 84 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~-------------- 84 (938)
.|.+||||++|+++|||+..++.|..++..++.+| +||+||+||||||+|+++|+.+.+...+..
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 37799999999999999999999999999888888 589999999999999999999875321110
Q ss_pred --cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC-
Q psy14500 85 --LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR- 158 (938)
Q Consensus 85 --~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~- 158 (938)
-....+++++.+.. .| ...++.+...+. ......|+||||+|.|. .+++|.|+..|+.
T Consensus 82 ~~~~~~dvieidaas~------~g--vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt--------~~A~NALLK~LEEp 145 (584)
T PRK14952 82 NGPGSIDVVELDAASH------GG--VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT--------TAGFNALLKIVEEP 145 (584)
T ss_pred ccCCCceEEEeccccc------cC--HHHHHHHHHHHHhhhhcCCceEEEEECCCcCC--------HHHHHHHHHHHhcC
Confidence 01123444443211 11 113444444433 12345699999999993 3578899999986
Q ss_pred -CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccC
Q psy14500 159 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 237 (938)
Q Consensus 159 -~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~ 237 (938)
+.+++|++|+.++ .+.+++++||..++|..++.++....+..++++ .++.++++++..++..+++.+
T Consensus 146 p~~~~fIL~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~----egi~i~~~al~~Ia~~s~Gdl--- 213 (584)
T PRK14952 146 PEHLIFIFATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ----EGVVVDDAVYPLVIRAGGGSP--- 213 (584)
T ss_pred CCCeEEEEEeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH---
Confidence 6789999988887 888999999999999999999999999888775 578999999999999998887
Q ss_pred CCchhhhhHHHHHHHH
Q psy14500 238 FMPDKAIDLIDEAAAK 253 (938)
Q Consensus 238 ~~p~~a~~ll~~a~~~ 253 (938)
+.++.+|++++..
T Consensus 214 ---R~aln~Ldql~~~ 226 (584)
T PRK14952 214 ---RDTLSVLDQLLAG 226 (584)
T ss_pred ---HHHHHHHHHHHhc
Confidence 9999999987653
No 89
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.80 E-value=7.2e-19 Score=204.71 Aligned_cols=229 Identities=16% Similarity=0.219 Sum_probs=181.8
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 505 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 505 (938)
++.++|.+.+++.+...+++.... ..++||+|++||||+++|++++....+...||+.+||+.+......+.+
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~-------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~el 275 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAML-------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESEL 275 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCC-------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHh
Confidence 457899999999998888765422 2369999999999999999999988777889999999998876666788
Q ss_pred cCCCCC-CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhh
Q psy14500 506 IGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 584 (938)
Q Consensus 506 ~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 584 (938)
||..+| +.|...+ ..+.+..+.+++||||||+.+++..|..|++++++|.+...++......++.+|+||+.+...+
T Consensus 276 FG~~~~~~~~~~~~--~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l 353 (520)
T PRK10820 276 FGHAPGAYPNALEG--KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 353 (520)
T ss_pred cCCCCCCcCCcccC--CCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHH
Confidence 997664 3332221 1234566778999999999999999999999999998876655444456788999999876554
Q ss_pred hhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHH
Q psy14500 585 KEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKI 661 (938)
Q Consensus 585 ~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L 661 (938)
.+ .+.|+++|++|+.. .|.+|||.+ +|+..++..++.++..+.... ...++++++++|
T Consensus 354 ~~-----------------~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~--~~~ls~~a~~~L 414 (520)
T PRK10820 354 VQ-----------------KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP--RPKLAADLNTVL 414 (520)
T ss_pred HH-----------------cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHH
Confidence 33 45799999999864 889999976 689999888888876544322 247999999999
Q ss_pred HhhcccccccccccccchHHHHHHHH
Q psy14500 662 SNIGFDLIYGARDVHGCKKSLSILLK 687 (938)
Q Consensus 662 ~~~~~~~~~~~~dl~~~~~~l~~~l~ 687 (938)
.+ |+|+.+++.|+++ +.+++.
T Consensus 415 ~~--y~WPGNvreL~nv---l~~a~~ 435 (520)
T PRK10820 415 TR--YGWPGNVRQLKNA---IYRALT 435 (520)
T ss_pred hc--CCCCCHHHHHHHH---HHHHHH
Confidence 87 8899999999998 777773
No 90
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.80 E-value=2.4e-18 Score=191.77 Aligned_cols=202 Identities=18% Similarity=0.226 Sum_probs=151.9
Q ss_pred hcCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
+.-+|++|.|.+..++.+...+. -..+.++||+||||||||++|+++|+.+ +..++.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~ 209 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIR 209 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEE
Confidence 34488899999988888777543 1456789999999999999999999987 677888
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC---Cccchhhhhhhhc---c----CCceE
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSIDAGNMLKPEL---S----RGELH 162 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~~~~~L~~~l---~----~~~i~ 162 (938)
+..+.+. .++.|+.+..++.+|..+.. ..|+||||||+|.+...+... .+...+..+..++ + ..++.
T Consensus 210 i~~s~l~--~k~~ge~~~~lr~lf~~A~~-~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~ 286 (398)
T PTZ00454 210 VVGSEFV--QKYLGEGPRMVRDVFRLARE-NAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVK 286 (398)
T ss_pred EehHHHH--HHhcchhHHHHHHHHHHHHh-cCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEE
Confidence 8877765 45788888889999998874 458999999999998654221 1222333333333 2 35789
Q ss_pred EEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 163 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 163 vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
+|+|||.++ .+|++++| ||+. |+|+.|+.++|..|++.+..+.....+ ..+..++..+.+|.
T Consensus 287 VI~aTN~~d-----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d-----vd~~~la~~t~g~s----- 351 (398)
T PTZ00454 287 VIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE-----VDLEDFVSRPEKIS----- 351 (398)
T ss_pred EEEecCCch-----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc-----cCHHHHHHHcCCCC-----
Confidence 999999998 89999998 9986 999999999999999988876433222 23456666655544
Q ss_pred chhhhhHHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKIK 255 (938)
Q Consensus 240 p~~a~~ll~~a~~~~~ 255 (938)
|++...++.+|+..+.
T Consensus 352 gaDI~~l~~eA~~~A~ 367 (398)
T PTZ00454 352 AADIAAICQEAGMQAV 367 (398)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6777788877765544
No 91
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1e-18 Score=195.04 Aligned_cols=204 Identities=21% Similarity=0.209 Sum_probs=154.7
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCCC--c----------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNS--L---------- 85 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~~--~---------- 85 (938)
..|++||||++|+++|||+..++.+...+..+..+|. ||+|||||||||+|+++|+.+.+...+.. .
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 4699999999999999999999999999888777775 89999999999999999999854211100 0
Q ss_pred --CCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--
Q psy14500 86 --LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 158 (938)
Q Consensus 86 --~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 158 (938)
.-..++.++.+. . .....++.++..+.. .+...|+||||+|.+. ...++.|+..++.
T Consensus 84 ~~~~~d~~~~~~~~------~--~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~--------~~a~naLLk~lEe~~ 147 (363)
T PRK14961 84 KGLCLDLIEIDAAS------R--TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 147 (363)
T ss_pred cCCCCceEEecccc------c--CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC--------HHHHHHHHHHHhcCC
Confidence 001233333211 0 111245566555431 1234699999999983 3466778888875
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
+.+.+|++|+..+ .+.+++.+||..++|++++.++...+++.++++ .++.++++++..++..+.+.+
T Consensus 148 ~~~~fIl~t~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~----~g~~i~~~al~~ia~~s~G~~---- 214 (363)
T PRK14961 148 QHIKFILATTDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK----ESIDTDEYALKLIAYHAHGSM---- 214 (363)
T ss_pred CCeEEEEEcCChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5677888888776 688999999999999999999999999887775 478899999999999988776
Q ss_pred CchhhhhHHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAAK 253 (938)
Q Consensus 239 ~p~~a~~ll~~a~~~ 253 (938)
+.+..+++.++..
T Consensus 215 --R~al~~l~~~~~~ 227 (363)
T PRK14961 215 --RDALNLLEHAINL 227 (363)
T ss_pred --HHHHHHHHHHHHh
Confidence 8899999887653
No 92
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.80 E-value=7.2e-19 Score=208.54 Aligned_cols=198 Identities=23% Similarity=0.336 Sum_probs=156.3
Q ss_pred hhHHHHHhcCCCCCccccHHHHH---HHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIR---RAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~---~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
.+|.++|||.+|++++||++.+. .+...+.....+++||+|||||||||+|+++++.+ +..++.+++
T Consensus 16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna 85 (725)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNA 85 (725)
T ss_pred CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehh
Confidence 48999999999999999999884 56677777888899999999999999999999987 455555554
Q ss_pred hhhhcCccccchHHHHHHHHHHHH----HhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhH
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEI----SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNE 171 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a----~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~ 171 (938)
.. .+.+ .++..+..+ ...+...+|||||+|.+.. ..++.|+..++.+.+++|++|+.+.
T Consensus 86 ~~--~~i~-------dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------~qQdaLL~~lE~g~IiLI~aTTenp 148 (725)
T PRK13341 86 VL--AGVK-------DLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------AQQDALLPWVENGTITLIGATTENP 148 (725)
T ss_pred hh--hhhH-------HHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------HHHHHHHHHhcCceEEEEEecCCCh
Confidence 31 1111 223333332 1223456999999999843 4567788999999999999988765
Q ss_pred HHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhc---ccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHH
Q psy14500 172 YRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEV---HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 248 (938)
Q Consensus 172 ~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~---~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 248 (938)
.+.+++++.+|+..+.|++++.+++..+++.++..... ..++.++++++..++..+.+.+ +.+..+++
T Consensus 149 ---~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~------R~lln~Le 219 (725)
T PRK13341 149 ---YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA------RSLLNALE 219 (725)
T ss_pred ---HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH------HHHHHHHH
Confidence 34688999999999999999999999999988874332 3468899999999999998888 88888888
Q ss_pred HHHH
Q psy14500 249 EAAA 252 (938)
Q Consensus 249 ~a~~ 252 (938)
.++.
T Consensus 220 ~a~~ 223 (725)
T PRK13341 220 LAVE 223 (725)
T ss_pred HHHH
Confidence 8764
No 93
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.79 E-value=2.6e-18 Score=183.44 Aligned_cols=213 Identities=19% Similarity=0.269 Sum_probs=155.4
Q ss_pred CCCCccccHHHHHHHHHHHh---------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQ---------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~---------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
.+++++|.+++.+++..+.. .+...|+||+||||||||++|+++|+.+..... .....++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEEe
Confidence 45789999988777664322 124467899999999999999999998754321 224567788
Q ss_pred ehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhH
Q psy14500 94 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNE 171 (938)
Q Consensus 94 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~ 171 (938)
+++.+. +.+.|+....++.+|..+. +.||||||+|.|....+.....+.++.|...++. +.+++|+++++.+
T Consensus 81 ~~~~l~--~~~~g~~~~~~~~~~~~a~----~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~ 154 (261)
T TIGR02881 81 ERADLV--GEYIGHTAQKTREVIKKAL----GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDE 154 (261)
T ss_pred cHHHhh--hhhccchHHHHHHHHHhcc----CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcch
Confidence 888776 4577888888888887764 3499999999996533222224566778887764 4678888887766
Q ss_pred HHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc----ccCCCchhhhhH
Q psy14500 172 YRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI----SDRFMPDKAIDL 246 (938)
Q Consensus 172 ~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~----~~~~~p~~a~~l 246 (938)
...+..++|++.+||.. |.|++++.+++..|++.++.. .+..++++++..++....+.. ...+-.+.+..+
T Consensus 155 ~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 155 MDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred hHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 66667889999999975 999999999999999988875 467799999988877654432 112334666677
Q ss_pred HHHHHHHH
Q psy14500 247 IDEAAAKI 254 (938)
Q Consensus 247 l~~a~~~~ 254 (938)
++.+..+.
T Consensus 231 ~e~a~~~~ 238 (261)
T TIGR02881 231 IEKAIRRQ 238 (261)
T ss_pred HHHHHHHH
Confidence 77665544
No 94
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=1e-18 Score=202.58 Aligned_cols=203 Identities=20% Similarity=0.215 Sum_probs=158.0
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCC----C----------
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN----S---------- 84 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~----~---------- 84 (938)
.|.+||||++|+++|||+..++.|.+++..++.+|. ||+||+||||||+|+++|+.+.+..... .
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C 84 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC 84 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence 589999999999999999999999999998888776 9999999999999999999996532100 0
Q ss_pred -----cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhc
Q psy14500 85 -----LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL 156 (938)
Q Consensus 85 -----~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l 156 (938)
.....+++++... ..| ...++.+++.+... +...|+||||+|.|. .+..|.|+..+
T Consensus 85 ~~i~~g~h~D~~eldaas------~~~--Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls--------~~a~NaLLKtL 148 (618)
T PRK14951 85 RDIDSGRFVDYTELDAAS------NRG--VDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT--------NTAFNAMLKTL 148 (618)
T ss_pred HHHHcCCCCceeecCccc------ccC--HHHHHHHHHHHHhCcccCCceEEEEEChhhCC--------HHHHHHHHHhc
Confidence 0011233333211 111 12456666554421 234699999999994 35678899999
Q ss_pred cC--CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 157 SR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 157 ~~--~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
+. +.+.+|++|+.+. .+.+.+++||..++|..++.++....++.++.+ .++.++++++..++..+.+.+
T Consensus 149 EEPP~~~~fIL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~----egi~ie~~AL~~La~~s~Gsl 219 (618)
T PRK14951 149 EEPPEYLKFVLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA----ENVPAEPQALRLLARAARGSM 219 (618)
T ss_pred ccCCCCeEEEEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH
Confidence 86 5688888888776 678889999999999999999999999887765 588999999999999999888
Q ss_pred ccCCCchhhhhHHHHHHHH
Q psy14500 235 SDRFMPDKAIDLIDEAAAK 253 (938)
Q Consensus 235 ~~~~~p~~a~~ll~~a~~~ 253 (938)
+.+..++++++..
T Consensus 220 ------R~al~lLdq~ia~ 232 (618)
T PRK14951 220 ------RDALSLTDQAIAF 232 (618)
T ss_pred ------HHHHHHHHHHHHh
Confidence 9999999887754
No 95
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.79 E-value=1.8e-18 Score=185.63 Aligned_cols=216 Identities=17% Similarity=0.293 Sum_probs=154.4
Q ss_pred HHHHHHHHHHhhccccChHHHHHHHHHHHHh-------hhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC---
Q psy14500 415 REKLLNIENLLCKRVVGQDEAISAVSNAIRR-------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--- 484 (938)
Q Consensus 415 ~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~-------~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~--- 484 (938)
...+.++.+.|++.++|.+.+++.+...+.. ...|+.. ..|..+++|+||||||||++|+++|+.++..
T Consensus 10 ~~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~ 88 (284)
T TIGR02880 10 ASGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYV 88 (284)
T ss_pred hccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCc
Confidence 3456777888888899999999988775432 1233332 2344589999999999999999999988543
Q ss_pred -CCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEcccccc---------CHHHHHHHHHhhc
Q psy14500 485 -EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKA---------NSDVFNILLQILD 554 (938)
Q Consensus 485 -~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~---------~~~~~~~Ll~~le 554 (938)
..+++.++++++.. . |.|... ..+...+..+.++||||||++.+ +..+++.|++.|+
T Consensus 89 ~~~~~v~v~~~~l~~-----~-------~~g~~~-~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le 155 (284)
T TIGR02880 89 RKGHLVSVTRDDLVG-----Q-------YIGHTA-PKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVME 155 (284)
T ss_pred ccceEEEecHHHHhH-----h-------hcccch-HHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHh
Confidence 23677777655432 2 333322 23445667777899999999977 4678999999998
Q ss_pred CCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH
Q psy14500 555 DGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 634 (938)
Q Consensus 555 ~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~ 634 (938)
++ ..++++|++++..... ....+.|+|.+||+..|.|++++.+++..|+.
T Consensus 156 ~~-----------~~~~~vI~a~~~~~~~-------------------~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~ 205 (284)
T TIGR02880 156 NQ-----------RDDLVVILAGYKDRMD-------------------SFFESNPGFSSRVAHHVDFPDYSEAELLVIAG 205 (284)
T ss_pred cC-----------CCCEEEEEeCCcHHHH-------------------HHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHH
Confidence 63 2566778877743110 11235899999999999999999999999988
Q ss_pred HHHHHHHHHHHccCCeEEEcHHHHHHHHhh-----cccccccccccccchHHHHHHH
Q psy14500 635 IQLNILKNKLLKMNMDLKISKAALKKISNI-----GFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 635 ~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~-----~~~~~~~~~dl~~~~~~l~~~l 686 (938)
.++.+.. ..+++++++.+.++ ..+|..++|.++++ +++++
T Consensus 206 ~~l~~~~---------~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~---ve~~~ 250 (284)
T TIGR02880 206 LMLKEQQ---------YRFSAEAEEAFADYIALRRTQPHFANARSIRNA---IDRAR 250 (284)
T ss_pred HHHHHhc---------cccCHHHHHHHHHHHHHhCCCCCCChHHHHHHH---HHHHH
Confidence 8877642 34677777777652 12677778888888 66655
No 96
>KOG0731|consensus
Probab=99.79 E-value=1.8e-18 Score=198.81 Aligned_cols=201 Identities=22% Similarity=0.318 Sum_probs=152.8
Q ss_pred CCCCCccccHHHHHHHHHHH---h---------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 28 GKLDPVIGRDDEIRRAIQVL---Q---------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l---~---------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
-+|+++.|.+++..+|.+++ . ..-++++||+||||||||.||+|+|.+. +.+++.++.
T Consensus 308 V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~svSG 377 (774)
T KOG0731|consen 308 VKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSVSG 377 (774)
T ss_pred CccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeeech
Confidence 47999999998766665544 3 3667899999999999999999999998 899999999
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCC---C-CCccc---hhhhhhhhcc----CCceEEE
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK---V-EGSID---AGNMLKPELS----RGELHCI 164 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~---~-~~~~~---~~~~L~~~l~----~~~i~vI 164 (938)
+.++. .+.|....+++.+|..++. ..|||+||||+|.+...+. . .+.++ ..|.|+..|+ ...++++
T Consensus 378 SEFvE--~~~g~~asrvr~lf~~ar~-~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~ 454 (774)
T KOG0731|consen 378 SEFVE--MFVGVGASRVRDLFPLARK-NAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVL 454 (774)
T ss_pred HHHHH--HhcccchHHHHHHHHHhhc-cCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEE
Confidence 98884 3455557789999999985 4599999999999987773 2 22223 3344444442 3579999
Q ss_pred EecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCch
Q psy14500 165 GATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 241 (938)
Q Consensus 165 ~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 241 (938)
++||+++ -+|++++| ||+. |.++.|+...|.+|++.+...... ..++..+..++.++.+|. ++
T Consensus 455 a~tnr~d-----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~----~~e~~dl~~~a~~t~gf~-----ga 520 (774)
T KOG0731|consen 455 AATNRPD-----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKL----DDEDVDLSKLASLTPGFS-----GA 520 (774)
T ss_pred eccCCcc-----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCC----CcchhhHHHHHhcCCCCc-----HH
Confidence 9999999 89999999 9997 999999999999999988775322 223444444666655544 56
Q ss_pred hhhhHHHHHHHHHH
Q psy14500 242 KAIDLIDEAAAKIK 255 (938)
Q Consensus 242 ~a~~ll~~a~~~~~ 255 (938)
+...++.+++....
T Consensus 521 dl~n~~neaa~~a~ 534 (774)
T KOG0731|consen 521 DLANLCNEAALLAA 534 (774)
T ss_pred HHHhhhhHHHHHHH
Confidence 66666666655443
No 97
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=1.8e-18 Score=197.13 Aligned_cols=205 Identities=21% Similarity=0.222 Sum_probs=159.8
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCC-CCcEEEcCCCChHHHHHHHHHHHHHcCCC----CC----------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSK-NNPVLIGEPGVGKTAIVEGLAQRIINGEV----PN---------- 83 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~-~~vLL~Gp~GtGKT~la~~la~~l~~~~~----p~---------- 83 (938)
.+|.++|||++|+++|||+..++.|...+..++. +++||+|||||||||+|+++|+.+.+... |.
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 5899999999999999999999999987766554 57899999999999999999999865321 00
Q ss_pred ----CcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhc
Q psy14500 84 ----SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL 156 (938)
Q Consensus 84 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l 156 (938)
......+++++... .. ....++.+++.+... +...|+||||+|.|. ....+.|+..+
T Consensus 89 ~~i~~~~h~Dv~eidaas------~~--~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls--------~~a~naLLk~L 152 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAAS------KT--SVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS--------KGAFNALLKTL 152 (507)
T ss_pred HHHhcCCCCcEEEeeccC------CC--CHHHHHHHHHHHHhccccCCcEEEEEEChhhcC--------HHHHHHHHHHH
Confidence 00112344444321 11 123566777666422 335699999999983 35677888888
Q ss_pred cC--CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 157 SR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 157 ~~--~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
+. ..+++|++|+... .+.+++.+||..++|.+++.++...+++.++++ .++.++++++..++..+++..
T Consensus 153 Eepp~~~vfI~aTte~~-----kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~----egi~ie~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 153 EEPPPHIIFIFATTEVQ-----KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ----ENLKTDIEALRIIAYKSEGSA 223 (507)
T ss_pred hhcCCCEEEEEEeCChH-----HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH
Confidence 75 5688888888776 788999999999999999999999999988875 588999999999999998887
Q ss_pred ccCCCchhhhhHHHHHHHHH
Q psy14500 235 SDRFMPDKAIDLIDEAAAKI 254 (938)
Q Consensus 235 ~~~~~p~~a~~ll~~a~~~~ 254 (938)
+.+..+++.++...
T Consensus 224 ------R~al~~Ldkai~~~ 237 (507)
T PRK06645 224 ------RDAVSILDQAASMS 237 (507)
T ss_pred ------HHHHHHHHHHHHhh
Confidence 99999999987653
No 98
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=3.6e-18 Score=194.47 Aligned_cols=204 Identities=23% Similarity=0.261 Sum_probs=159.6
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCC--------------C
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN--------------S 84 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~--------------~ 84 (938)
.|++||||.+|+++|||+.+++.|...+..+..+|+ ||+||+|+|||++|+++++.+.+...+. .
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~ 82 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALE 82 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhh
Confidence 589999999999999999999999999988888876 8999999999999999999986532211 0
Q ss_pred cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--C
Q psy14500 85 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 159 (938)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 159 (938)
.....++.++.+. ..| ...++.++..+... +...|+||||+|.|. .++++.|+..++. .
T Consensus 83 ~~h~dv~eldaas------~~g--Id~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------~~A~NALLK~LEEpp~ 146 (535)
T PRK08451 83 NRHIDIIEMDAAS------NRG--IDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------KEAFNALLKTLEEPPS 146 (535)
T ss_pred cCCCeEEEecccc------ccC--HHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHHhhcCC
Confidence 1122344443211 111 12456666553311 334699999999993 4678889999986 5
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
.+.+|.+|+.+. .+.+++++||..++|.+++.++....++.++.+ .|+.++++++..++..+++..
T Consensus 147 ~t~FIL~ttd~~-----kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~----EGi~i~~~Al~~Ia~~s~Gdl----- 212 (535)
T PRK08451 147 YVKFILATTDPL-----KLPATILSRTQHFRFKQIPQNSIISHLKTILEK----EGVSYEPEALEILARSGNGSL----- 212 (535)
T ss_pred ceEEEEEECChh-----hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcH-----
Confidence 678888888765 788999999999999999999999999888775 588999999999999999887
Q ss_pred chhhhhHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKI 254 (938)
Q Consensus 240 p~~a~~ll~~a~~~~ 254 (938)
+.+..+++.++...
T Consensus 213 -R~alnlLdqai~~~ 226 (535)
T PRK08451 213 -RDTLTLLDQAIIYC 226 (535)
T ss_pred -HHHHHHHHHHHHhc
Confidence 99999999887543
No 99
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=5.1e-18 Score=203.61 Aligned_cols=203 Identities=20% Similarity=0.180 Sum_probs=157.7
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCCc-------------
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNSL------------- 85 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~------------- 85 (938)
.|.+||||.+|++||||+.+++.|...+..++.+| +||+||+|||||++|++||+.+.+...+...
T Consensus 4 ~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~ 83 (824)
T PRK07764 4 ALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAP 83 (824)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHc
Confidence 58899999999999999999999999999888888 6899999999999999999999753211100
Q ss_pred ---CCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC-
Q psy14500 86 ---LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR- 158 (938)
Q Consensus 86 ---~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~- 158 (938)
....++.++.... .+ ...++.+.+.+. ......|+||||+|.|. .+.+|.|+.+|++
T Consensus 84 g~~~~~dv~eidaas~------~~--Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt--------~~a~NaLLK~LEEp 147 (824)
T PRK07764 84 GGPGSLDVTEIDAASH------GG--VDDARELRERAFFAPAESRYKIFIIDEAHMVT--------PQGFNALLKIVEEP 147 (824)
T ss_pred CCCCCCcEEEeccccc------CC--HHHHHHHHHHHHhchhcCCceEEEEechhhcC--------HHHHHHHHHHHhCC
Confidence 1123344432111 01 113444433332 12345699999999994 4678899999986
Q ss_pred -CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccC
Q psy14500 159 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 237 (938)
Q Consensus 159 -~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~ 237 (938)
..++||++|+..+ .+.++|++||..++|..++.++....|+.+++. .++.++++++..++..+++.+
T Consensus 148 P~~~~fIl~tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~----EGv~id~eal~lLa~~sgGdl--- 215 (824)
T PRK07764 148 PEHLKFIFATTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ----EGVPVEPGVLPLVIRAGGGSV--- 215 (824)
T ss_pred CCCeEEEEEeCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH---
Confidence 6788999988877 688899999999999999999999999887765 588999999999999999887
Q ss_pred CCchhhhhHHHHHHHH
Q psy14500 238 FMPDKAIDLIDEAAAK 253 (938)
Q Consensus 238 ~~p~~a~~ll~~a~~~ 253 (938)
+.+..+|++.+..
T Consensus 216 ---R~Al~eLEKLia~ 228 (824)
T PRK07764 216 ---RDSLSVLDQLLAG 228 (824)
T ss_pred ---HHHHHHHHHHHhh
Confidence 8888999887743
No 100
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=1.4e-18 Score=200.05 Aligned_cols=204 Identities=21% Similarity=0.246 Sum_probs=158.4
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC-------------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------- 84 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~------------- 84 (938)
..|.+||||++|+++|||+.+++.|..++..++.++ +||+||+|||||++|+++|+.+.+...+..
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 358999999999999999999999999998777665 699999999999999999999865321100
Q ss_pred -cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--
Q psy14500 85 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 158 (938)
Q Consensus 85 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 158 (938)
..-..+++++... ..| ...++.++..+. ......|+||||+|.|. ....+.|+..|+.
T Consensus 84 ~g~~~DvlEidaAs------~~g--Vd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------~~A~NALLKtLEEPp 147 (709)
T PRK08691 84 AGRYVDLLEIDAAS------NTG--IDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------KSAFNAMLKTLEEPP 147 (709)
T ss_pred ccCccceEEEeccc------cCC--HHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------HHHHHHHHHHHHhCC
Confidence 0001233343211 111 124566665443 12345699999999883 3567788888875
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
+.+.+|++|+... .+.+.+++||..+.|..++.++....|++++++ .++.++++++..++..+.+.+
T Consensus 148 ~~v~fILaTtd~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k----Egi~id~eAL~~Ia~~A~Gsl---- 214 (709)
T PRK08691 148 EHVKFILATTDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS----EKIAYEPPALQLLGRAAAGSM---- 214 (709)
T ss_pred CCcEEEEEeCCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCCH----
Confidence 5788899988776 788999999999999999999999999988875 688999999999999999888
Q ss_pred CchhhhhHHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAAK 253 (938)
Q Consensus 239 ~p~~a~~ll~~a~~~ 253 (938)
+.++.++++++..
T Consensus 215 --RdAlnLLDqaia~ 227 (709)
T PRK08691 215 --RDALSLLDQAIAL 227 (709)
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999988764
No 101
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.78 E-value=2.9e-18 Score=199.61 Aligned_cols=200 Identities=22% Similarity=0.332 Sum_probs=150.9
Q ss_pred cCCCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 27 LGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 27 ~~~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
.-+|++++|.+++.+++..++. ...+.++||+||||||||++|+++|..+ +.+++.++
T Consensus 51 ~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i~ 120 (495)
T TIGR01241 51 KVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSIS 120 (495)
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeecc
Confidence 4589999999988766665443 3455689999999999999999999987 77888888
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC--C-c---cchhhhhhhhc----cCCceEEE
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE--G-S---IDAGNMLKPEL----SRGELHCI 164 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~--~-~---~~~~~~L~~~l----~~~~i~vI 164 (938)
.+.+. ..+.|..+..++.+|..+.. ..|+||||||+|.+...++.. + . ....+.|+..+ +.+.+++|
T Consensus 121 ~~~~~--~~~~g~~~~~l~~~f~~a~~-~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI 197 (495)
T TIGR01241 121 GSDFV--EMFVGVGASRVRDLFEQAKK-NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVI 197 (495)
T ss_pred HHHHH--HHHhcccHHHHHHHHHHHHh-cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEE
Confidence 87766 34667777889999999875 458899999999998765431 1 1 12334444444 34579999
Q ss_pred EecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCch
Q psy14500 165 GATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 241 (938)
Q Consensus 165 ~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 241 (938)
+|||+++ .+|++++| ||+. |+++.|+.++|.+|++.++...... ++..+..++..+.+|. ++
T Consensus 198 ~aTn~~~-----~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-----~~~~l~~la~~t~G~s-----ga 262 (495)
T TIGR01241 198 AATNRPD-----VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-----PDVDLKAVARRTPGFS-----GA 262 (495)
T ss_pred EecCChh-----hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-----cchhHHHHHHhCCCCC-----HH
Confidence 9999998 89999998 9986 9999999999999999877642111 2344567777766554 56
Q ss_pred hhhhHHHHHHHHH
Q psy14500 242 KAIDLIDEAAAKI 254 (938)
Q Consensus 242 ~a~~ll~~a~~~~ 254 (938)
+...++.+++...
T Consensus 263 dl~~l~~eA~~~a 275 (495)
T TIGR01241 263 DLANLLNEAALLA 275 (495)
T ss_pred HHHHHHHHHHHHH
Confidence 6777777765443
No 102
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.78 E-value=2.4e-18 Score=192.47 Aligned_cols=206 Identities=21% Similarity=0.269 Sum_probs=153.9
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14500 22 TEKARLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 88 (938)
Q Consensus 22 ~~~~~~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~ 88 (938)
.++.++.+|++|.|.+++++.+...+. -..+.++||+||||||||++|+++|+.+ +.
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~ 243 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SA 243 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CC
Confidence 455677899999999999888887663 1355689999999999999999999988 56
Q ss_pred eEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCC---CCccchhhhhhhhc-------cC
Q psy14500 89 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV---EGSIDAGNMLKPEL-------SR 158 (938)
Q Consensus 89 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~---~~~~~~~~~L~~~l-------~~ 158 (938)
.++.+..+.+. .++.|+.+..++.+|..+.. ..|+||||||+|.+...+.. .+..+++..+..++ ..
T Consensus 244 ~fi~V~~seL~--~k~~Ge~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 244 TFLRVVGSELI--QKYLGDGPKLVRELFRVAEE-NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred CEEEEecchhh--hhhcchHHHHHHHHHHHHHh-CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 77888777765 46788888889999988875 45899999999999865532 22333444444333 34
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccc
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 235 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~ 235 (938)
.++.+|+|||..+ .+|++++| ||+. |+|+.|+.++|..||+.+..+.....+ ..+..++..+.+|.
T Consensus 321 ~~V~VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d-----vdl~~la~~t~g~s- 389 (438)
T PTZ00361 321 GDVKVIMATNRIE-----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED-----VDLEEFIMAKDELS- 389 (438)
T ss_pred CCeEEEEecCChH-----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC-----cCHHHHHHhcCCCC-
Confidence 5799999999988 88999987 9986 999999999999999987765432222 23455555555544
Q ss_pred cCCCchhhhhHHHHHHHHHH
Q psy14500 236 DRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 236 ~~~~p~~a~~ll~~a~~~~~ 255 (938)
++....++..|+..+.
T Consensus 390 ----gAdI~~i~~eA~~~Al 405 (438)
T PTZ00361 390 ----GADIKAICTEAGLLAL 405 (438)
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 5556667777665543
No 103
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.78 E-value=2.4e-18 Score=197.71 Aligned_cols=205 Identities=19% Similarity=0.187 Sum_probs=154.2
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCC-CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCC-------------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRS-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------- 84 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~-~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~------------- 84 (938)
..|+++|||++|++||||+.+++.|...+..++ .+++||+||+|||||++|+++|+.+.+...+..
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 378999999999999999999999999888765 466789999999999999999999865321100
Q ss_pred -cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--Cce
Q psy14500 85 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GEL 161 (938)
Q Consensus 85 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i 161 (938)
.....+++++.... ....+.. .+...+..........|+||||+|.|. .+.++.|+..++. +.+
T Consensus 84 ~g~hpDv~eId~a~~----~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt--------~~a~naLLk~LEEP~~~~ 150 (624)
T PRK14959 84 QGMHVDVVEIDGASN----RGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLT--------REAFNALLKTLEEPPARV 150 (624)
T ss_pred cCCCCceEEEecccc----cCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCC--------HHHHHHHHHHhhccCCCE
Confidence 01122444433110 0011111 233333322223445699999999993 3567889999975 578
Q ss_pred EEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCch
Q psy14500 162 HCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 241 (938)
Q Consensus 162 ~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 241 (938)
++|++||... .+.+.+++||..+.|+.++.++...+|+.++.+ .++.++++++..++.++.+.+ +
T Consensus 151 ifILaTt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~----egi~id~eal~lIA~~s~Gdl------R 215 (624)
T PRK14959 151 TFVLATTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR----EGVDYDPAAVRLIARRAAGSV------R 215 (624)
T ss_pred EEEEecCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------H
Confidence 8889888876 677899999999999999999999999887764 578899999999999999888 9
Q ss_pred hhhhHHHHHH
Q psy14500 242 KAIDLIDEAA 251 (938)
Q Consensus 242 ~a~~ll~~a~ 251 (938)
+++.++++++
T Consensus 216 ~Al~lLeqll 225 (624)
T PRK14959 216 DSMSLLGQVL 225 (624)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 104
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.78 E-value=9.1e-19 Score=196.37 Aligned_cols=204 Identities=24% Similarity=0.289 Sum_probs=164.3
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCC------------CcC
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN------------SLL 86 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~------------~~~ 86 (938)
.|..||||++|+++|||+.+.+.|...+...+..| -||.||.||||||+|+.+|+.+.+.+.+. ...
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE 84 (515)
T ss_pred HHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc
Confidence 58899999999999999999999999988777666 58999999999999999999997654211 011
Q ss_pred C--CeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--
Q psy14500 87 S--KKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-- 159 (938)
Q Consensus 87 ~--~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-- 159 (938)
+ ..++++|..+- ..-..++.+.+.+.. .....|++|||+|+| +..+.|.|+..+|..
T Consensus 85 g~~~DviEiDaASn--------~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML--------S~~afNALLKTLEEPP~ 148 (515)
T COG2812 85 GSLIDVIEIDAASN--------TGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML--------SKQAFNALLKTLEEPPS 148 (515)
T ss_pred CCcccchhhhhhhc--------cChHHHHHHHHHhccCCccccceEEEEecHHhh--------hHHHHHHHhcccccCcc
Confidence 1 12222222111 112246666666652 233569999999999 456788999999864
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
.|.+|++|+.++ ++++.++|||+.+.|...+.++....|..++.+ +++.++++++..+++.+.|.+
T Consensus 149 hV~FIlATTe~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~----E~I~~e~~aL~~ia~~a~Gs~----- 214 (515)
T COG2812 149 HVKFILATTEPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILDK----EGINIEEDALSLIARAAEGSL----- 214 (515)
T ss_pred CeEEEEecCCcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHHh----cCCccCHHHHHHHHHHcCCCh-----
Confidence 699999999998 999999999999999999999999999988875 799999999999999999988
Q ss_pred chhhhhHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKI 254 (938)
Q Consensus 240 p~~a~~ll~~a~~~~ 254 (938)
+++..++|++....
T Consensus 215 -RDalslLDq~i~~~ 228 (515)
T COG2812 215 -RDALSLLDQAIAFG 228 (515)
T ss_pred -hhHHHHHHHHHHcc
Confidence 99999999998764
No 105
>KOG0740|consensus
Probab=99.78 E-value=3.6e-18 Score=185.77 Aligned_cols=203 Identities=24% Similarity=0.344 Sum_probs=160.9
Q ss_pred HHHHHhcCCCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14500 21 LTEKARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 88 (938)
Q Consensus 21 l~~~~~~~~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~ 88 (938)
+....++-.++++-|.+.+.+.+...+. +....++||.||||+|||+|++++|-+. +.
T Consensus 143 I~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~a 212 (428)
T KOG0740|consen 143 IGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GA 212 (428)
T ss_pred HhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cc
Confidence 4444466678888887766655555332 5666789999999999999999999998 88
Q ss_pred eEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhh-----hhhhhc-----cC
Q psy14500 89 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGN-----MLKPEL-----SR 158 (938)
Q Consensus 89 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~-----~L~~~l-----~~ 158 (938)
.++.++.+.+. ++|.|+.+..++.+|.-|+ ...|.|+||||+|+++..+ +...++... .|.+.. ..
T Consensus 213 tff~iSassLt--sK~~Ge~eK~vralf~vAr-~~qPsvifidEidslls~R-s~~e~e~srr~ktefLiq~~~~~s~~~ 288 (428)
T KOG0740|consen 213 TFFNISASSLT--SKYVGESEKLVRALFKVAR-SLQPSVIFIDEIDSLLSKR-SDNEHESSRRLKTEFLLQFDGKNSAPD 288 (428)
T ss_pred eEeeccHHHhh--hhccChHHHHHHHHHHHHH-hcCCeEEEechhHHHHhhc-CCcccccchhhhhHHHhhhccccCCCC
Confidence 99999999988 7899999999999999887 5669999999999999887 333333322 222222 34
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 237 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~ 237 (938)
..|++|+|||.+. .+|.++++||.. +++|.|+.+.|..+|.+++... +..+.+..+..+++++.+|-
T Consensus 289 drvlvigaTN~P~-----e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~----~~~l~~~d~~~l~~~Tegys--- 356 (428)
T KOG0740|consen 289 DRVLVIGATNRPW-----ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ----PNGLSDLDISLLAKVTEGYS--- 356 (428)
T ss_pred CeEEEEecCCCch-----HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC----CCCccHHHHHHHHHHhcCcc---
Confidence 5899999999998 999999999996 9999999999999999998863 56678899999999998876
Q ss_pred CCchhhhhHHHHHH
Q psy14500 238 FMPDKAIDLIDEAA 251 (938)
Q Consensus 238 ~~p~~a~~ll~~a~ 251 (938)
..+..+++.+++
T Consensus 357 --gsdi~~l~kea~ 368 (428)
T KOG0740|consen 357 --GSDITALCKEAA 368 (428)
T ss_pred --cccHHHHHHHhh
Confidence 344555555544
No 106
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.1e-17 Score=193.69 Aligned_cols=203 Identities=19% Similarity=0.218 Sum_probs=158.2
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCC---Cc----------
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN---SL---------- 85 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~---~~---------- 85 (938)
.|.+||||++|+++||++.+++.|...+..++.+|. ||+|||||||||+|+.+|+.+.+...+. ..
T Consensus 5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 589999999999999999999999999988777775 8999999999999999999986532110 00
Q ss_pred -CCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--C
Q psy14500 86 -LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 159 (938)
Q Consensus 86 -~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 159 (938)
.-..++.++.+. .. ....++.++..+.. .+...|+||||+|.|. .+..|.|+..++. +
T Consensus 85 ~~~~d~~ei~~~~------~~--~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls--------~~a~naLLK~LEepp~ 148 (527)
T PRK14969 85 GRFVDLIEVDAAS------NT--QVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS--------KSAFNAMLKTLEEPPE 148 (527)
T ss_pred CCCCceeEeeccc------cC--CHHHHHHHHHHHhhCcccCCceEEEEcCcccCC--------HHHHHHHHHHHhCCCC
Confidence 011334443221 01 12246666665542 1335699999999993 3567889999986 5
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
.+++|++|+.++ .+.+++++||..++|..++.++....+..++++ .++.+++.++..++..+.+.+
T Consensus 149 ~~~fIL~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~----egi~~~~~al~~la~~s~Gsl----- 214 (527)
T PRK14969 149 HVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ----ENIPFDATALQLLARAAAGSM----- 214 (527)
T ss_pred CEEEEEEeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 788999888876 677789999999999999999999988887764 578899999999999998877
Q ss_pred chhhhhHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAK 253 (938)
Q Consensus 240 p~~a~~ll~~a~~~ 253 (938)
+.+..++++++..
T Consensus 215 -r~al~lldqai~~ 227 (527)
T PRK14969 215 -RDALSLLDQAIAY 227 (527)
T ss_pred -HHHHHHHHHHHHh
Confidence 9999999988764
No 107
>KOG0727|consensus
Probab=99.77 E-value=1.3e-18 Score=170.55 Aligned_cols=178 Identities=20% Similarity=0.302 Sum_probs=139.0
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEE
Q psy14500 49 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 128 (938)
Q Consensus 49 ~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL 128 (938)
-.++.+||+|||||||||+|++++|+.. ...++.+.-+.++ .+|.|+....++.+|.-++. +.|+|+
T Consensus 186 idpprgvllygppg~gktml~kava~~t----------~a~firvvgsefv--qkylgegprmvrdvfrlake-napsii 252 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKE-NAPSII 252 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHH--HHHhccCcHHHHHHHHHHhc-cCCcEE
Confidence 4678899999999999999999999876 6678888888888 57889999899999999885 459999
Q ss_pred EEeCccccccCC---CCCCccchhhhhhhhcc-------CCceEEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCC
Q psy14500 129 FIDELHTMIGTG---KVEGSIDAGNMLKPELS-------RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPD 195 (938)
Q Consensus 129 ~iDEid~l~~~~---~~~~~~~~~~~L~~~l~-------~~~i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~ 195 (938)
||||+|.+.-.+ +++...+++..|..++. ..++.+|.+||+.+ .+||+++| |++. |+||.|+
T Consensus 253 fideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefplpd 327 (408)
T KOG0727|consen 253 FIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred EeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc-----ccCHhhcCCccccccccCCCCc
Confidence 999999997543 23334567778877773 34799999999998 89999999 9986 9999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHH
Q psy14500 196 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 254 (938)
Q Consensus 196 ~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 254 (938)
..+++-++..+..+......+++.+-+ .. ++.-..+.+..++.++...+
T Consensus 328 rrqkrlvf~titskm~ls~~vdle~~v-----~r-----pdkis~adi~aicqeagm~a 376 (408)
T KOG0727|consen 328 RRQKRLVFSTITSKMNLSDEVDLEDLV-----AR-----PDKISGADINAICQEAGMLA 376 (408)
T ss_pred hhhhhhhHHhhhhcccCCcccCHHHHh-----cC-----ccccchhhHHHHHHHHhHHH
Confidence 999999999998887665555443321 11 23333455566666665443
No 108
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.77 E-value=5.3e-18 Score=206.58 Aligned_cols=197 Identities=23% Similarity=0.324 Sum_probs=152.6
Q ss_pred CCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
-+++++.|.+.+.+.|...+. ...+.++||+||||||||++|+++|.++ +.+++.++
T Consensus 450 ~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v~ 519 (733)
T TIGR01243 450 VRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAVR 519 (733)
T ss_pred cchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEe
Confidence 368899999988887777553 2445679999999999999999999998 78899999
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc----cchhhhhhhhc----cCCceEEEEe
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS----IDAGNMLKPEL----SRGELHCIGA 166 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~----~~~~~~L~~~l----~~~~i~vI~~ 166 (938)
.+.+. ++|.|+.+..++.+|..+.. ..|+||||||+|.+.+.++.... ..+.+.|+..+ +..++++|+|
T Consensus 520 ~~~l~--~~~vGese~~i~~~f~~A~~-~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~a 596 (733)
T TIGR01243 520 GPEIL--SKWVGESEKAIREIFRKARQ-AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAA 596 (733)
T ss_pred hHHHh--hcccCcHHHHHHHHHHHHHh-cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEe
Confidence 88887 57899999999999999985 44899999999999887653322 22445555555 3467999999
Q ss_pred cChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhh
Q psy14500 167 TTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKA 243 (938)
Q Consensus 167 tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a 243 (938)
||.++ .+|++++| ||+. |+++.|+.++|.+||+......... ++..+..++..+.+|. +++.
T Consensus 597 Tn~~~-----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-----~~~~l~~la~~t~g~s-----gadi 661 (733)
T TIGR01243 597 TNRPD-----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-----EDVDLEELAEMTEGYT-----GADI 661 (733)
T ss_pred CCChh-----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-----ccCCHHHHHHHcCCCC-----HHHH
Confidence 99998 89999998 9996 9999999999999998665543221 2234677777776655 4555
Q ss_pred hhHHHHHHH
Q psy14500 244 IDLIDEAAA 252 (938)
Q Consensus 244 ~~ll~~a~~ 252 (938)
..++.+|+.
T Consensus 662 ~~~~~~A~~ 670 (733)
T TIGR01243 662 EAVCREAAM 670 (733)
T ss_pred HHHHHHHHH
Confidence 555555554
No 109
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.77 E-value=2.7e-18 Score=194.49 Aligned_cols=181 Identities=25% Similarity=0.337 Sum_probs=135.1
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14500 22 TEKARLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 88 (938)
Q Consensus 22 ~~~~~~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~ 88 (938)
.+.+++-+|++|.|.++.++++...+. -..++++|||||||||||++|+++|+.+............
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 344567799999999999888887653 2456789999999999999999999988432110000112
Q ss_pred eEEEEehhhhhcCccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccc----hhhhhhhhcc----
Q psy14500 89 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSID----AGNMLKPELS---- 157 (938)
Q Consensus 89 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~----~~~~L~~~l~---- 157 (938)
.++.+..+.+. .+|.|+.+..++.+|..+... +.|+||||||+|.+++.+....+.+ +.+.|+..++
T Consensus 253 ~fl~v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 253 YFLNIKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred eEEeccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 23334444444 568899999999999988743 3689999999999998765433322 3345555553
Q ss_pred CCceEEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhh
Q psy14500 158 RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKK 209 (938)
Q Consensus 158 ~~~i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~ 209 (938)
.+++++|+|||+++ .+|++++| ||+. |+|+.|+.+++..|++.++..
T Consensus 331 ~~~ViVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 331 LDNVIVIGASNRED-----MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CCceEEEeccCChh-----hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 36799999999998 89999999 9996 999999999999999887653
No 110
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=5.4e-18 Score=193.74 Aligned_cols=204 Identities=23% Similarity=0.267 Sum_probs=156.1
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCC--CcCC--------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN--SLLS-------- 87 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~--~~~~-------- 87 (938)
..|.++|||.+|++++||+..++.+...+..+..++ +||+||+|+|||++|+++|+.+.+..... ..-.
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 479999999999999999999999999987766665 78999999999999999999986532110 0001
Q ss_pred ----CeEEEEehhhhhcCccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--
Q psy14500 88 ----KKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 158 (938)
Q Consensus 88 ----~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 158 (938)
..++.++.+. ..| ...++.++..+... ....|++|||+|.|. .++++.|+..++.
T Consensus 84 ~~~h~DiieIdaas------~ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------~~A~NaLLKtLEEPp 147 (605)
T PRK05896 84 TNQSVDIVELDAAS------NNG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------TSAWNALLKTLEEPP 147 (605)
T ss_pred cCCCCceEEecccc------ccC--HHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------HHHHHHHHHHHHhCC
Confidence 1333443211 111 12355555554421 234699999999983 3467889999985
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
+.+++|++|+... .+.+++++||..++|.+++.++....++.++.+ .++.++++++..++.++++.+
T Consensus 148 ~~tvfIL~Tt~~~-----KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k----egi~Is~eal~~La~lS~Gdl---- 214 (605)
T PRK05896 148 KHVVFIFATTEFQ-----KIPLTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADGSL---- 214 (605)
T ss_pred CcEEEEEECCChH-----hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcH----
Confidence 4678888888776 788999999999999999999999999887765 578899999999999998877
Q ss_pred CchhhhhHHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAAK 253 (938)
Q Consensus 239 ~p~~a~~ll~~a~~~ 253 (938)
+.+..+++.++..
T Consensus 215 --R~AlnlLekL~~y 227 (605)
T PRK05896 215 --RDGLSILDQLSTF 227 (605)
T ss_pred --HHHHHHHHHHHhh
Confidence 8899999886543
No 111
>KOG0726|consensus
Probab=99.77 E-value=6.5e-19 Score=176.21 Aligned_cols=179 Identities=24% Similarity=0.353 Sum_probs=147.9
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14500 22 TEKARLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 88 (938)
Q Consensus 22 ~~~~~~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~ 88 (938)
.++++..++.++=|-+..++++.+.+. -.++.+|+|||+||||||.||+++|+.. ..
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SA 245 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SA 245 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------ch
Confidence 577788899999999999999988764 3567889999999999999999999876 56
Q ss_pred eEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCC---CCCCccchhhhhhhhc-------cC
Q psy14500 89 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTG---KVEGSIDAGNMLKPEL-------SR 158 (938)
Q Consensus 89 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~---~~~~~~~~~~~L~~~l-------~~ 158 (938)
.++.+--+.++ .+|.|+....++.+|+-|..+ .|+|+||||||.+...+ .+++..+++..++.+| .+
T Consensus 246 TFlRvvGseLi--QkylGdGpklvRqlF~vA~e~-apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr 322 (440)
T KOG0726|consen 246 TFLRVVGSELI--QKYLGDGPKLVRELFRVAEEH-APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR 322 (440)
T ss_pred hhhhhhhHHHH--HHHhccchHHHHHHHHHHHhc-CCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc
Confidence 66666667777 568899999999999999854 49999999999986543 2445567888777777 36
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEI 218 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i 218 (938)
+.+.+|.+||..+ .+||+|.| |++. |+|+.|+...+..|+.-+..+......+.+
T Consensus 323 gDvKvimATnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dVnl 380 (440)
T KOG0726|consen 323 GDVKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDVNL 380 (440)
T ss_pred CCeEEEEeccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccccH
Confidence 7899999999999 99999999 9996 999999999999999877766555444443
No 112
>KOG0735|consensus
Probab=99.77 E-value=6.7e-18 Score=187.53 Aligned_cols=183 Identities=22% Similarity=0.310 Sum_probs=149.0
Q ss_pred CCCCccccHHHHHHHHHHHhc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~~-------------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
+.+++=|..++.+.+.+.+.. +.+.+||||||||||||.||.++|... +..++.+.-
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKG 734 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKG 734 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecC
Confidence 456777777776666665542 334679999999999999999999987 788888887
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCC---CCccchhhhhhhhccC----CceEEEEecC
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV---EGSIDAGNMLKPELSR----GELHCIGATT 168 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~---~~~~~~~~~L~~~l~~----~~i~vI~~tn 168 (938)
..+. .+|.|..|+.++.+|..|.. ..|||||+||+|++.+.++- +-...+.|.|+..|.. .++.+++||+
T Consensus 735 PElL--~KyIGaSEq~vR~lF~rA~~-a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTs 811 (952)
T KOG0735|consen 735 PELL--SKYIGASEQNVRDLFERAQS-AKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATS 811 (952)
T ss_pred HHHH--HHHhcccHHHHHHHHHHhhc-cCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecC
Confidence 7887 68999999999999999984 55999999999999998753 2345578888888853 4789999999
Q ss_pred hhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 169 LNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 169 ~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
+++ .+||||+| |++. ++.+.|+..+|.+|++.+...+.. -++..++.++..+.+|.
T Consensus 812 Rpd-----liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-----~~~vdl~~~a~~T~g~t 870 (952)
T KOG0735|consen 812 RPD-----LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-----DTDVDLECLAQKTDGFT 870 (952)
T ss_pred Ccc-----ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCC-----ccccchHHHhhhcCCCc
Confidence 999 89999999 9997 999999999999999988775322 23455778888888776
No 113
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=1e-17 Score=195.42 Aligned_cols=203 Identities=21% Similarity=0.253 Sum_probs=158.1
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC--------------
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS-------------- 84 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~-------------- 84 (938)
.|.++|||.+|++++||+..++.|.+.+.....+| +||+||+|||||++|+.+|+.+.+...+..
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN 84 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence 57899999999999999999999999998877777 588999999999999999999865432110
Q ss_pred cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--C
Q psy14500 85 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 159 (938)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 159 (938)
.....++.++.+. +.....++.+...+.. .....|+||||+|.|. ....+.|+..++. .
T Consensus 85 g~~~dv~eidaas--------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------~~a~naLLKtLEepp~ 148 (559)
T PRK05563 85 GSLMDVIEIDAAS--------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------TGAFNALLKTLEEPPA 148 (559)
T ss_pred CCCCCeEEeeccc--------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHhcCCCC
Confidence 1112344444321 1112245566655542 2345699999999993 3567888888886 4
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
.+++|++|+.+. .+.+++++||..+.|.+|+.++....++.++++ .++.++++++..++..+++..
T Consensus 149 ~~ifIlatt~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~----egi~i~~~al~~ia~~s~G~~----- 214 (559)
T PRK05563 149 HVIFILATTEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILDK----EGIEYEDEALRLIARAAEGGM----- 214 (559)
T ss_pred CeEEEEEeCChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 678888887776 789999999999999999999999999888775 588999999999999998877
Q ss_pred chhhhhHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAK 253 (938)
Q Consensus 240 p~~a~~ll~~a~~~ 253 (938)
+.+..+++.+...
T Consensus 215 -R~al~~Ldq~~~~ 227 (559)
T PRK05563 215 -RDALSILDQAISF 227 (559)
T ss_pred -HHHHHHHHHHHHh
Confidence 8999999887653
No 114
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.76 E-value=5.6e-18 Score=204.04 Aligned_cols=225 Identities=16% Similarity=0.215 Sum_probs=179.0
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 505 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 505 (938)
...++|.+.+++.+...+++.... ..++||+|++||||+++|++|++...+...||+.+||..+......+.+
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~-------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~el 396 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKS-------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEF 396 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCc-------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHh
Confidence 456889999999888888765421 2369999999999999999999998877889999999998876666789
Q ss_pred cCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 506 IGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 506 ~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
||...+. ...+ ..+.+..+.+++||||||+.+++.+|..|+++|+++.++..++......++.+|+||+.+...+.
T Consensus 397 fg~~~~~---~~~~-~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~ 472 (638)
T PRK11388 397 LGSDRTD---SENG-RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLV 472 (638)
T ss_pred cCCCCcC---ccCC-CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHH
Confidence 9865321 1111 12335567789999999999999999999999999998876655444557889999998665433
Q ss_pred hhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHH
Q psy14500 586 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 662 (938)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 662 (938)
+ .+.|+++|++|+.. .|.+|||.+ +|+..++..++.++..... ..+.+++++++.|.
T Consensus 473 ~-----------------~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~---~~~~~s~~a~~~L~ 532 (638)
T PRK11388 473 E-----------------QNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFS---TRLKIDDDALARLV 532 (638)
T ss_pred h-----------------cCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhC---CCCCcCHHHHHHHH
Confidence 2 45799999999965 788999976 6899999999988765443 23679999999998
Q ss_pred hhcccccccccccccchHHHHHHH
Q psy14500 663 NIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 663 ~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+ |+|+.+++.|.++ +++++
T Consensus 533 ~--y~WPGNvreL~~~---l~~~~ 551 (638)
T PRK11388 533 S--YRWPGNDFELRSV---IENLA 551 (638)
T ss_pred c--CCCCChHHHHHHH---HHHHH
Confidence 8 8888899999988 77766
No 115
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=9.3e-18 Score=195.50 Aligned_cols=203 Identities=21% Similarity=0.277 Sum_probs=157.2
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCCC-----------cC
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNS-----------LL 86 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~~-----------~~ 86 (938)
..|+++|||.+|+++|||+.+++.|...+..+..+|. ||+||+|+|||++|+++|+.+.+...... ..
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 4799999999999999999999999999988777775 89999999999999999999865321100 00
Q ss_pred CCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--Cce
Q psy14500 87 SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GEL 161 (938)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i 161 (938)
...++.++.. ...| ...++.+++.+.. .+...|+||||+|.|. ..+++.|+..|+. +.+
T Consensus 86 ~~Dvieidaa------sn~~--vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------~~A~NALLKtLEEPP~~t 149 (725)
T PRK07133 86 SLDIIEMDAA------SNNG--VDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------KSAFNALLKTLEEPPKHV 149 (725)
T ss_pred CCcEEEEecc------ccCC--HHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------HHHHHHHHHHhhcCCCce
Confidence 1122222211 1011 2235666665542 2345699999999984 3578889999986 468
Q ss_pred EEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCch
Q psy14500 162 HCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 241 (938)
Q Consensus 162 ~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 241 (938)
++|++|+.++ .+.+++++||..++|.+++.++....++.++.+ .++.++++++..++.++++.+ +
T Consensus 150 ifILaTte~~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k----egI~id~eAl~~LA~lS~Gsl------R 214 (725)
T PRK07133 150 IFILATTEVH-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILEK----ENISYEKNALKLIAKLSSGSL------R 214 (725)
T ss_pred EEEEEcCChh-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------H
Confidence 8888888776 788999999999999999999999999887765 578899999999999999877 8
Q ss_pred hhhhHHHHHHH
Q psy14500 242 KAIDLIDEAAA 252 (938)
Q Consensus 242 ~a~~ll~~a~~ 252 (938)
.+..+++.++.
T Consensus 215 ~AlslLekl~~ 225 (725)
T PRK07133 215 DALSIAEQVSI 225 (725)
T ss_pred HHHHHHHHHHH
Confidence 89999888754
No 116
>PRK04195 replication factor C large subunit; Provisional
Probab=99.76 E-value=3.6e-18 Score=197.96 Aligned_cols=194 Identities=19% Similarity=0.281 Sum_probs=151.8
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcC----CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRR----SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~----~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
..|++||||.+|++++|++++++.+..++... ..+++||+||||||||++|+++|+.+ +..++.++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ieln 71 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELN 71 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEc
Confidence 37999999999999999999999999988643 26789999999999999999999998 67788887
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhc-----CCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecCh
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNN-----QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTL 169 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~-----~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~ 169 (938)
.+.... ...+..++..+... ..+.||||||+|.|.... .....+.|...++.....+|++||.
T Consensus 72 asd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----d~~~~~aL~~~l~~~~~~iIli~n~ 139 (482)
T PRK04195 72 ASDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----DRGGARAILELIKKAKQPIILTAND 139 (482)
T ss_pred cccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----chhHHHHHHHHHHcCCCCEEEeccC
Confidence 654321 11244444443321 246799999999996532 1234556777777777778888887
Q ss_pred hHHHHhhhcCH-HHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHH
Q psy14500 170 NEYRQYIEKDA-AFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 248 (938)
Q Consensus 170 ~~~~~~~~ld~-al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 248 (938)
.. .+.+ .+++||..|.|++|+..++..+++.++.. .++.++++++..++..+.+.+ +.++..|+
T Consensus 140 ~~-----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~----egi~i~~eaL~~Ia~~s~GDl------R~ain~Lq 204 (482)
T PRK04195 140 PY-----DPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK----EGIECDDEALKEIAERSGGDL------RSAINDLQ 204 (482)
T ss_pred cc-----ccchhhHhccceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHH
Confidence 64 5565 78899999999999999999999988875 688899999999999998888 77776665
Q ss_pred H
Q psy14500 249 E 249 (938)
Q Consensus 249 ~ 249 (938)
.
T Consensus 205 ~ 205 (482)
T PRK04195 205 A 205 (482)
T ss_pred H
Confidence 4
No 117
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1e-17 Score=192.01 Aligned_cols=202 Identities=22% Similarity=0.230 Sum_probs=156.3
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCC-CCC------------Cc
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGE-VPN------------SL 85 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~-~p~------------~~ 85 (938)
.|.+||||.+|++++||+++++.|..++.....+|. ||+|||||||||+|+++|+.+.+.. .+. ..
T Consensus 3 ~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~ 82 (504)
T PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRG 82 (504)
T ss_pred hHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcC
Confidence 467999999999999999999999999998888887 9999999999999999999986521 110 01
Q ss_pred CCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--Cc
Q psy14500 86 LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GE 160 (938)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~ 160 (938)
....++.++... ..+ ...++.+...+.. ...+.|+||||+|.+. .+.++.|+..++. ..
T Consensus 83 ~h~dv~el~~~~------~~~--vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------~~a~naLLk~LEep~~~ 146 (504)
T PRK14963 83 AHPDVLEIDAAS------NNS--VEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------KSAFNALLKTLEEPPEH 146 (504)
T ss_pred CCCceEEecccc------cCC--HHHHHHHHHHHhhccccCCCeEEEEECccccC--------HHHHHHHHHHHHhCCCC
Confidence 112344554321 111 1234444444331 2346699999999883 3567778888876 56
Q ss_pred eEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCc
Q psy14500 161 LHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 240 (938)
Q Consensus 161 i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 240 (938)
+++|.+|+... .+.+++.+||..++|.+|+.++....++.++.+ .|+.++++++..++..+++.+
T Consensus 147 t~~Il~t~~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~----egi~i~~~Al~~ia~~s~Gdl------ 211 (504)
T PRK14963 147 VIFILATTEPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA----EGREAEPEALQLVARLADGAM------ 211 (504)
T ss_pred EEEEEEcCChh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------
Confidence 78888888776 789999999999999999999999999988875 588999999999999999988
Q ss_pred hhhhhHHHHHHH
Q psy14500 241 DKAIDLIDEAAA 252 (938)
Q Consensus 241 ~~a~~ll~~a~~ 252 (938)
+.+...|+.++.
T Consensus 212 R~aln~Lekl~~ 223 (504)
T PRK14963 212 RDAESLLERLLA 223 (504)
T ss_pred HHHHHHHHHHHh
Confidence 999999888754
No 118
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=1.6e-17 Score=194.42 Aligned_cols=203 Identities=24% Similarity=0.340 Sum_probs=156.9
Q ss_pred CCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
-+++++.|.+.+...+...+. ...+..+||+||||||||++|+++|..+ +.+++.++
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~v~ 308 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFISVK 308 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEEee
Confidence 467777777766555554332 2455679999999999999999999987 88999999
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cchhhhhhhhcc----CCceEEEEec
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPELS----RGELHCIGAT 167 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l~----~~~i~vI~~t 167 (938)
.+.+. ++|.|+.++.++.+|..|. ...|+||||||+|.+.+.++.... ..+.+.|+..+. ...+.+|+||
T Consensus 309 ~~~l~--sk~vGesek~ir~~F~~A~-~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aT 385 (494)
T COG0464 309 GSELL--SKWVGESEKNIRELFEKAR-KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAAT 385 (494)
T ss_pred CHHHh--ccccchHHHHHHHHHHHHH-cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecC
Confidence 99777 7899999999999999998 455999999999999988764432 245566665552 3578999999
Q ss_pred ChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhh
Q psy14500 168 TLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAI 244 (938)
Q Consensus 168 n~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~ 244 (938)
|+++ .+|++++| ||+. ++|+.|+.++|..|++..+...... -..+..+..++..+.+ +.+.++.
T Consensus 386 N~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~---~~~~~~~~~l~~~t~~-----~sgadi~ 452 (494)
T COG0464 386 NRPD-----DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP---LAEDVDLEELAEITEG-----YSGADIA 452 (494)
T ss_pred CCcc-----ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc---chhhhhHHHHHHHhcC-----CCHHHHH
Confidence 9998 89999999 9996 9999999999999999887742111 1334556667776555 4567777
Q ss_pred hHHHHHHHHHHH
Q psy14500 245 DLIDEAAAKIKI 256 (938)
Q Consensus 245 ~ll~~a~~~~~~ 256 (938)
.++.+|+.....
T Consensus 453 ~i~~ea~~~~~~ 464 (494)
T COG0464 453 ALVREAALEALR 464 (494)
T ss_pred HHHHHHHHHHHH
Confidence 778777665443
No 119
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.76 E-value=1.1e-17 Score=202.57 Aligned_cols=226 Identities=16% Similarity=0.246 Sum_probs=180.8
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
..++|++.+++.+...++..... ..++||+|++|||||++|++|+....+.+.+|+.+||..+........+|
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~-------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lf 448 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQS-------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLF 448 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCC-------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhc
Confidence 36999999999999888865422 23799999999999999999999988888999999999987655566788
Q ss_pred CCCCCC-ccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 507 GAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 507 g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
|+..+. .|... ...+.+..+.+++||||||+.+++.+|..|+.+|+++.+...++......++.+|+||+.+.....
T Consensus 449 g~~~~~~~g~~~--~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~ 526 (686)
T PRK15429 449 GHERGAFTGASA--QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMV 526 (686)
T ss_pred Cccccccccccc--chhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHH
Confidence 876543 23211 122445667789999999999999999999999999988776655555678899999998665433
Q ss_pred hhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeE-EEcHHHHHHH
Q psy14500 586 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDL-KISKAALKKI 661 (938)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l-~~~~~~~~~L 661 (938)
. .+.|+++|++|+.. .|.+|||.+ +|+..++..++.++..+.. ..+ .+++++++.|
T Consensus 527 ~-----------------~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~---~~~~~~s~~al~~L 586 (686)
T PRK15429 527 A-----------------DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMG---RNIDSIPAETLRTL 586 (686)
T ss_pred H-----------------cCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcC---CCCCCcCHHHHHHH
Confidence 2 45799999999976 789999975 7899898888888766443 333 5999999999
Q ss_pred HhhcccccccccccccchHHHHHHH
Q psy14500 662 SNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 662 ~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
.+ |+|+.+++.|+++ +++++
T Consensus 587 ~~--y~WPGNvrEL~~~---i~~a~ 606 (686)
T PRK15429 587 SN--MEWPGNVRELENV---IERAV 606 (686)
T ss_pred Hh--CCCCCcHHHHHHH---HHHHH
Confidence 88 8899999999999 77776
No 120
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.76 E-value=5.8e-18 Score=175.70 Aligned_cols=164 Identities=27% Similarity=0.447 Sum_probs=128.6
Q ss_pred ccccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14500 427 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 498 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 498 (938)
+.|-|.+..++.+.+++... ..|+..|+ .+|||||||||||.||+|+|+.. +..|+++..+++..
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPK----GVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSElVq 223 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPK----GVLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSELVQ 223 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCC----ceEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHHHH
Confidence 56788888999999988543 23444443 59999999999999999999887 88999999999887
Q ss_pred hhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCce
Q psy14500 499 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 565 (938)
Q Consensus 499 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 565 (938)
+ |+|+... +.++...++..+|||||||||.+. .++|.+|+++|.+- |+..
T Consensus 224 K------------YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~ql---DGFD-- 286 (406)
T COG1222 224 K------------YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQL---DGFD-- 286 (406)
T ss_pred H------------HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhc---cCCC--
Confidence 5 6666543 667777888888999999998754 58999999888751 1110
Q ss_pred eecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 566 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 566 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
+..++-+|++||... .++|+++ +|||..|.|+.++.+...+|+....++
T Consensus 287 -~~~nvKVI~ATNR~D------------------------~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk 337 (406)
T COG1222 287 -PRGNVKVIMATNRPD------------------------ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK 337 (406)
T ss_pred -CCCCeEEEEecCCcc------------------------ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh
Confidence 246788999999743 3677777 799999999999999999996655443
No 121
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=1.8e-17 Score=183.07 Aligned_cols=190 Identities=23% Similarity=0.294 Sum_probs=142.3
Q ss_pred HHHHHhcCCCCCccccHHHHHHHHHHHh-----cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 21 LTEKARLGKLDPVIGRDDEIRRAIQVLQ-----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 21 l~~~~~~~~~~~lvG~~~~~~~l~~~l~-----~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
+..+|||.+|++++|+++.++.+...+. ....+++||+||||||||++|+++|+.+ +..+...+.
T Consensus 15 ~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~~ 84 (328)
T PRK00080 15 IERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITSG 84 (328)
T ss_pred hhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEec
Confidence 3678999999999999999998887665 3445689999999999999999999998 445544443
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC-----------------
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR----------------- 158 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~----------------- 158 (938)
..+.. ...+..++..+ ..+.||||||+|.+.. ...+.|...++.
T Consensus 85 ~~~~~--------~~~l~~~l~~l---~~~~vl~IDEi~~l~~--------~~~e~l~~~~e~~~~~~~l~~~~~~~~~~ 145 (328)
T PRK00080 85 PALEK--------PGDLAAILTNL---EEGDVLFIDEIHRLSP--------VVEEILYPAMEDFRLDIMIGKGPAARSIR 145 (328)
T ss_pred ccccC--------hHHHHHHHHhc---ccCCEEEEecHhhcch--------HHHHHHHHHHHhcceeeeeccCcccccee
Confidence 22211 11244444443 2355999999999853 223334433321
Q ss_pred ---CceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 159 ---GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 159 ---~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
..+.+|++||+.. .+++++.+||.. +.|++|+.+++..|++..... .++.++++++..++..+.++.
T Consensus 146 ~~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~ia~~~~G~p 216 (328)
T PRK00080 146 LDLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI----LGVEIDEEGALEIARRSRGTP 216 (328)
T ss_pred ecCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHcCCCc
Confidence 2367899999887 789999999975 899999999999999977765 578899999999999987765
Q ss_pred ccCCCchhhhhHHHHHHHHH
Q psy14500 235 SDRFMPDKAIDLIDEAAAKI 254 (938)
Q Consensus 235 ~~~~~p~~a~~ll~~a~~~~ 254 (938)
+.+..+++.+....
T Consensus 217 ------R~a~~~l~~~~~~a 230 (328)
T PRK00080 217 ------RIANRLLRRVRDFA 230 (328)
T ss_pred ------hHHHHHHHHHHHHH
Confidence 88888887765443
No 122
>CHL00181 cbbX CbbX; Provisional
Probab=99.76 E-value=3.7e-17 Score=175.21 Aligned_cols=210 Identities=17% Similarity=0.218 Sum_probs=149.2
Q ss_pred CccccHHHHHHHHHHHh---------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 32 PVIGRDDEIRRAIQVLQ---------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~---------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
+++|.+++.+++.++.. .....|+||+||||||||++|+++|+.+..... ....+++.++.+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~---~~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY---IKKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC---CCCCceEEecHH
Confidence 68999888776655432 123446899999999999999999998754221 124468888887
Q ss_pred hhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCC-CCCccchhhhhhhhccC--CceEEEEecChhHHH
Q psy14500 97 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK-VEGSIDAGNMLKPELSR--GELHCIGATTLNEYR 173 (938)
Q Consensus 97 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~-~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~~~ 173 (938)
.+. +.+.|+.+.....++..+. +.||||||++.|.+.+. ...+.++++.|...|+. +.+++|++++.....
T Consensus 101 ~l~--~~~~g~~~~~~~~~l~~a~----ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 101 DLV--GQYIGHTAPKTKEVLKKAM----GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHH--HHHhccchHHHHHHHHHcc----CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 776 4467776666777777654 34999999999865321 22345677888888864 468999999887777
Q ss_pred HhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC--chhhhhHHHHH
Q psy14500 174 QYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM--PDKAIDLIDEA 250 (938)
Q Consensus 174 ~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~--p~~a~~ll~~a 250 (938)
.++..+|+|.+||.. |.|++++.+++..|++.++++. +..+++++...+.....+......+ .+.+..+++.+
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~----~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ----QYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh----cCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 777889999999985 9999999999999999988863 5667787776666554332211222 25555666665
Q ss_pred HHHH
Q psy14500 251 AAKI 254 (938)
Q Consensus 251 ~~~~ 254 (938)
....
T Consensus 251 ~~~~ 254 (287)
T CHL00181 251 RMRQ 254 (287)
T ss_pred HHHH
Confidence 5443
No 123
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=1.6e-17 Score=193.35 Aligned_cols=204 Identities=23% Similarity=0.278 Sum_probs=158.2
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCC-C---CCcCC------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEV-P---NSLLS------ 87 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~-p---~~~~~------ 87 (938)
..|.+||||++|+++|||+..++.|...+...+.++ +||+||+|+|||++|+++|+.+.+... . .....
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 468999999999999999999999999998777665 899999999999999999999865321 0 00001
Q ss_pred ---------CeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhh
Q psy14500 88 ---------KKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE 155 (938)
Q Consensus 88 ---------~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~ 155 (938)
..+++++... ..| ...++.+++.+.. .....|+||||+|.|. ....+.|+..
T Consensus 92 C~~i~~g~h~Dv~e~~a~s------~~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------~~a~naLLKt 155 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAAS------HTG--VDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------TAAFNALLKT 155 (598)
T ss_pred HHHHhcCCCCceEEecccc------cCC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------HHHHHHHHHH
Confidence 1233333221 111 2246666665542 2345699999999993 3567889999
Q ss_pred ccC--CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhc
Q psy14500 156 LSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 233 (938)
Q Consensus 156 l~~--~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 233 (938)
|++ ..+++|++|+... .+.+.+++||..+.|..++.++....++.++++ .++.++++++..++..++++
T Consensus 156 LEePp~~~~fIl~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~k----egi~i~~eAl~lIa~~a~Gd 226 (598)
T PRK09111 156 LEEPPPHVKFIFATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAK----EGVEVEDEALALIARAAEGS 226 (598)
T ss_pred HHhCCCCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 986 5688888888776 678889999999999999999999999888765 58899999999999999988
Q ss_pred cccCCCchhhhhHHHHHHHH
Q psy14500 234 ISDRFMPDKAIDLIDEAAAK 253 (938)
Q Consensus 234 ~~~~~~p~~a~~ll~~a~~~ 253 (938)
. +.+..++++++..
T Consensus 227 l------r~al~~Ldkli~~ 240 (598)
T PRK09111 227 V------RDGLSLLDQAIAH 240 (598)
T ss_pred H------HHHHHHHHHHHhh
Confidence 7 9999999887654
No 124
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.75 E-value=1.4e-17 Score=183.99 Aligned_cols=199 Identities=18% Similarity=0.240 Sum_probs=147.4
Q ss_pred hhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEE-EcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 18 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVL-IGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 18 ~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL-~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
-..|++||||++|++++|+++..+.+..++..+..++++| +||||+|||++|+++++.+ +..++.++++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~ 77 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGS 77 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccC
Confidence 4578999999999999999999999999988777777766 8999999999999999987 4566667664
Q ss_pred hhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhHHHH
Q psy14500 97 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQ 174 (938)
Q Consensus 97 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~~~~ 174 (938)
. . . .......+............+.+|||||+|.+.. .+..+.|+..++. +.+.+|++||...
T Consensus 78 ~-~---~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~~~~~L~~~le~~~~~~~~Ilt~n~~~--- 142 (316)
T PHA02544 78 D-C---R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------ADAQRHLRSFMEAYSKNCSFIITANNKN--- 142 (316)
T ss_pred c-c---c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HHHHHHHHHHHHhcCCCceEEEEcCChh---
Confidence 4 1 1 1122222333222222123467999999998822 2345567777763 5678899998776
Q ss_pred hhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhh---cccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHH
Q psy14500 175 YIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYE---VHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 249 (938)
Q Consensus 175 ~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~---~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 249 (938)
.+.+++++||..+.|+.|+.+++..+++.+..+.. ...++.++++++..++..+.+.. +.++..++.
T Consensus 143 --~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~------r~~l~~l~~ 212 (316)
T PHA02544 143 --GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDF------RRTINELQR 212 (316)
T ss_pred --hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCH------HHHHHHHHH
Confidence 78999999999999999999999988876655432 24688999999999988776655 555555553
No 125
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1e-17 Score=196.39 Aligned_cols=204 Identities=20% Similarity=0.227 Sum_probs=158.9
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCC---C-----------
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN---S----------- 84 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~---~----------- 84 (938)
-|.+||||++|+++|||+++++.|...+..+..+|. ||+||+|+|||++|+++|+.+.+...+. +
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 578999999999999999999999999988777774 8999999999999999999986532110 0
Q ss_pred cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--C
Q psy14500 85 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 159 (938)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 159 (938)
.....+++++... .. ....++.+...+.. .....|+||||+|.|. ....|.|+..||. .
T Consensus 85 g~~~d~~eid~~s------~~--~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------~~a~naLLk~LEepp~ 148 (576)
T PRK14965 85 GRSVDVFEIDGAS------NT--GVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------TNAFNALLKTLEEPPP 148 (576)
T ss_pred CCCCCeeeeeccC------cc--CHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------HHHHHHHHHHHHcCCC
Confidence 0011233333211 11 11235555555442 2334699999999993 3578899999986 4
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
.+++|++||.+. .+.+++++||..++|..++.++....++.++.+ .++.++++++..++..+++.+
T Consensus 149 ~~~fIl~t~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~----egi~i~~~al~~la~~a~G~l----- 214 (576)
T PRK14965 149 HVKFIFATTEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ----EGISISDAALALVARKGDGSM----- 214 (576)
T ss_pred CeEEEEEeCChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH-----
Confidence 788898888876 788999999999999999999999888887765 588999999999999999988
Q ss_pred chhhhhHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKI 254 (938)
Q Consensus 240 p~~a~~ll~~a~~~~ 254 (938)
+.+..+++++++..
T Consensus 215 -r~al~~Ldqliay~ 228 (576)
T PRK14965 215 -RDSLSTLDQVLAFC 228 (576)
T ss_pred -HHHHHHHHHHHHhc
Confidence 99999999887654
No 126
>CHL00176 ftsH cell division protein; Validated
Probab=99.75 E-value=3.2e-17 Score=192.29 Aligned_cols=199 Identities=22% Similarity=0.300 Sum_probs=148.1
Q ss_pred CCCCCccccHHHHHHHHHHH---h---------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 28 GKLDPVIGRDDEIRRAIQVL---Q---------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l---~---------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
-+|++++|.++..+++...+ . ...+.++||+||||||||++|+++|.++ +.+++.+++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~ 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISG 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccH
Confidence 48899999998776666544 2 2335689999999999999999999988 778888888
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC---Ccc---chhhhhhhhc----cCCceEEEE
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSI---DAGNMLKPEL----SRGELHCIG 165 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~---~~~~~L~~~l----~~~~i~vI~ 165 (938)
+.+. ..+.|.....++.+|..+.. ..|+||||||+|.+...++.. +.. ...+.|+..+ .+..+++|+
T Consensus 250 s~f~--~~~~g~~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIa 326 (638)
T CHL00176 250 SEFV--EMFVGVGAARVRDLFKKAKE-NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIA 326 (638)
T ss_pred HHHH--HHhhhhhHHHHHHHHHHHhc-CCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEE
Confidence 7765 34556666678999999874 558999999999998654321 111 2334444444 345799999
Q ss_pred ecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchh
Q psy14500 166 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 242 (938)
Q Consensus 166 ~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 242 (938)
+||.++ .+|++++| ||+. |.|+.|+.++|..||+.++... ...++..+..++..+.+|. +++
T Consensus 327 aTN~~~-----~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~-----~~~~d~~l~~lA~~t~G~s-----gaD 391 (638)
T CHL00176 327 ATNRVD-----ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK-----KLSPDVSLELIARRTPGFS-----GAD 391 (638)
T ss_pred ecCchH-----hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-----ccchhHHHHHHHhcCCCCC-----HHH
Confidence 999998 78999998 8986 9999999999999999887652 1123455667777665543 567
Q ss_pred hhhHHHHHHHHH
Q psy14500 243 AIDLIDEAAAKI 254 (938)
Q Consensus 243 a~~ll~~a~~~~ 254 (938)
...++++++...
T Consensus 392 L~~lvneAal~a 403 (638)
T CHL00176 392 LANLLNEAAILT 403 (638)
T ss_pred HHHHHHHHHHHH
Confidence 778887776543
No 127
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.75 E-value=5.7e-18 Score=167.14 Aligned_cols=166 Identities=22% Similarity=0.324 Sum_probs=125.3
Q ss_pred hhccccChHHHHHHHHHHHHhhhcCCCC-CCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 425 LCKRVVGQDEAISAVSNAIRRSRSGLSD-AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 425 l~~~viGq~~~~~~l~~~l~~~~~~~~~-~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
..++|+||+.|++...-.++.....-.- .-.|. ++||+||||||||++|+++|+.. +.|++.++..++..+
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPk-nVLFyGppGTGKTm~Akalane~---kvp~l~vkat~liGe---- 190 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPK-NVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELIGE---- 190 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcc-eeEEECCCCccHHHHHHHHhccc---CCceEEechHHHHHH----
Confidence 3467999999998777666543311000 01233 89999999999999999999888 889999988876654
Q ss_pred hhcCCCCCCcccc--ccchhHHHHHhCCCEEEEEccccccC------------HHHHHHHHHhhcCCceecCCCceeecC
Q psy14500 504 RLIGAPPGYIGYE--EGGYLTEIVRRKPYSLILLDEIEKAN------------SDVFNILLQILDDGRLTDNRGRTINFR 569 (938)
Q Consensus 504 ~l~g~~~~~~g~~--~~~~l~~~~~~~~~~vl~lDEid~~~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~ 569 (938)
|+|.. ..+.+....++..+||+||||+|.+. .++.|+||+-|+. . ....
T Consensus 191 --------hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg-i--------~ene 253 (368)
T COG1223 191 --------HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG-I--------KENE 253 (368)
T ss_pred --------HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC-c--------ccCC
Confidence 44432 23556666778888999999999765 2578999999984 1 1335
Q ss_pred CeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 570 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 570 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
.++.|++||.+. .++|++.+||..-|.|.-++.++...|++..+..
T Consensus 254 GVvtIaaTN~p~------------------------~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~ 299 (368)
T COG1223 254 GVVTIAATNRPE------------------------LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKK 299 (368)
T ss_pred ceEEEeecCChh------------------------hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHh
Confidence 578899999743 3789999999999999999999999997776654
No 128
>KOG0729|consensus
Probab=99.74 E-value=2.3e-17 Score=163.04 Aligned_cols=163 Identities=24% Similarity=0.356 Sum_probs=136.9
Q ss_pred CCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
++.++=|-.+.++.+.+.+. -.++.+||+|||||||||.+|+++|++. +.-++.+--
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvig 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIG 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehh
Confidence 56677777788888877654 2567889999999999999999999987 778888888
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCC---CCccchhhhhhhhc-------cCCceEEEE
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV---EGSIDAGNMLKPEL-------SRGELHCIG 165 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~---~~~~~~~~~L~~~l-------~~~~i~vI~ 165 (938)
+.++ .+|+|+....++.+|+-++ ...-||+|+||+|.+.+.+-. ++..+++..+++++ .+|+|.++.
T Consensus 245 selv--qkyvgegarmvrelf~mar-tkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlm 321 (435)
T KOG0729|consen 245 SELV--QKYVGEGARMVRELFEMAR-TKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 321 (435)
T ss_pred HHHH--HHHhhhhHHHHHHHHHHhc-ccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEe
Confidence 8888 5799999999999999887 455799999999999876532 34556777777776 368999999
Q ss_pred ecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhh
Q psy14500 166 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKK 209 (938)
Q Consensus 166 ~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~ 209 (938)
+||+++ .+||+|+| |++. ++|..|+.+-|..|++-+.+.
T Consensus 322 atnrpd-----tldpallrpgrldrkvef~lpdlegrt~i~kihaks 363 (435)
T KOG0729|consen 322 ATNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKS 363 (435)
T ss_pred ecCCCC-----CcCHhhcCCcccccceeccCCcccccceeEEEeccc
Confidence 999999 89999999 9986 999999999999999866554
No 129
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=4.6e-17 Score=188.90 Aligned_cols=204 Identities=20% Similarity=0.193 Sum_probs=155.8
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC-------------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------- 84 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~------------- 84 (938)
..|.++|||.+|+++|||+..++.|...+..+..+| +||+||+|+|||++|+++|+.+.+...+..
T Consensus 4 ~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~ 83 (563)
T PRK06647 4 RGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSID 83 (563)
T ss_pred HHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHH
Confidence 458899999999999999999999999998877776 789999999999999999999865321110
Q ss_pred -cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--
Q psy14500 85 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 158 (938)
Q Consensus 85 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 158 (938)
.....++.++.. ... ....++.+.+.+. ......|+||||+|.|. ..+++.|+..++.
T Consensus 84 ~~~~~dv~~idga------s~~--~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------~~a~naLLK~LEepp 147 (563)
T PRK06647 84 NDNSLDVIEIDGA------SNT--SVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------NSAFNALLKTIEEPP 147 (563)
T ss_pred cCCCCCeEEecCc------ccC--CHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------HHHHHHHHHhhccCC
Confidence 001123333211 001 1123445544433 12345699999999993 3567889999986
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
..+++|++|+... .+.+++++||..++|.+++.++....++.++.. .++.++++++..++..+++.+
T Consensus 148 ~~~vfI~~tte~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~----egi~id~eAl~lLa~~s~Gdl---- 214 (563)
T PRK06647 148 PYIVFIFATTEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE----DQIKYEDEALKWIAYKSTGSV---- 214 (563)
T ss_pred CCEEEEEecCChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5788888887765 688999999999999999999999998877765 578999999999999998877
Q ss_pred CchhhhhHHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAAK 253 (938)
Q Consensus 239 ~p~~a~~ll~~a~~~ 253 (938)
+.+..++++++..
T Consensus 215 --R~alslLdklis~ 227 (563)
T PRK06647 215 --RDAYTLFDQVVSF 227 (563)
T ss_pred --HHHHHHHHHHHhh
Confidence 8999999887653
No 130
>KOG0652|consensus
Probab=99.74 E-value=1.4e-17 Score=164.12 Aligned_cols=184 Identities=21% Similarity=0.297 Sum_probs=140.1
Q ss_pred CCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
..+.++=|-++.+++|.+.+- -.++.++|+|||||||||.+|++.|... +..+..+-
T Consensus 168 E~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFLKLA 237 (424)
T KOG0652|consen 168 EQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFLKLA 237 (424)
T ss_pred ccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHHHhc
Confidence 467788889999999888542 3667889999999999999999998875 33443333
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCC---CCCccchhhhhhhhcc-------CCceEEE
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK---VEGSIDAGNMLKPELS-------RGELHCI 164 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~---~~~~~~~~~~L~~~l~-------~~~i~vI 164 (938)
...++ ..|.|+..+.++..|.-++. ..|+|+||||+|.+.-.+. ..|..+++..++.++. ...+.+|
T Consensus 238 gPQLV--QMfIGdGAkLVRDAFaLAKE-kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKvi 314 (424)
T KOG0652|consen 238 GPQLV--QMFIGDGAKLVRDAFALAKE-KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVI 314 (424)
T ss_pred chHHH--hhhhcchHHHHHHHHHHhhc-cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEE
Confidence 33333 34778888889999988875 4599999999999965432 2455678877777773 4579999
Q ss_pred EecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 165 GATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 165 ~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
++||+.+ -+||+|+| |++. |+||.|+.+.|..|++-+..+.....++.+ +.+++.+..|-
T Consensus 315 AATNRvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNf-----eELaRsTddFN 377 (424)
T KOG0652|consen 315 AATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNF-----EELARSTDDFN 377 (424)
T ss_pred eeccccc-----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCH-----HHHhhcccccC
Confidence 9999998 79999999 9986 999999999999999987776554444433 44555555544
No 131
>KOG0989|consensus
Probab=99.74 E-value=2.5e-17 Score=167.65 Aligned_cols=190 Identities=22% Similarity=0.339 Sum_probs=135.0
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC---ceEEeccccccchhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE---SIIRIDMSEFIEKHSI 502 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~---~~~~~~~~~~~~~~~~ 502 (938)
.+.+.||+.++..+.+++.+ +. .+++|||||||||||+.|+++|+++|+... .+...+.+......
T Consensus 35 ~de~~gQe~vV~~L~~a~~~-~~--------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-- 103 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR-RI--------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-- 103 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh-cC--------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc--
Confidence 35688999999999999986 32 247999999999999999999999986321 11222222222111
Q ss_pred hhhcCCCCCCcccccc--chhHHHH------HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 503 SRLIGAPPGYIGYEEG--GYLTEIV------RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 503 ~~l~g~~~~~~g~~~~--~~l~~~~------~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
.+..... ..+.... ...++.|++|||+|.|..++|++|.+.||+ ....++||
T Consensus 104 ---------vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-----------~s~~trFi 163 (346)
T KOG0989|consen 104 ---------VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-----------FSRTTRFI 163 (346)
T ss_pred ---------chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-----------cccceEEE
Confidence 0000000 0000000 123458999999999999999999999996 45678999
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
+.||.-. ++..++.+|| ..+.|+++..+++...++ ..+..++ +.++
T Consensus 164 LIcnyls------------------------rii~pi~SRC-~KfrFk~L~d~~iv~rL~-------~Ia~~E~--v~~d 209 (346)
T KOG0989|consen 164 LICNYLS------------------------RIIRPLVSRC-QKFRFKKLKDEDIVDRLE-------KIASKEG--VDID 209 (346)
T ss_pred EEcCChh------------------------hCChHHHhhH-HHhcCCCcchHHHHHHHH-------HHHHHhC--CCCC
Confidence 9999633 4678899999 599999999988877743 3344556 8899
Q ss_pred HHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 655 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 655 ~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
++++++++. +.-||++.....|+.+-
T Consensus 210 ~~al~~I~~------~S~GdLR~Ait~Lqsls 235 (346)
T KOG0989|consen 210 DDALKLIAK------ISDGDLRRAITTLQSLS 235 (346)
T ss_pred HHHHHHHHH------HcCCcHHHHHHHHHHhh
Confidence 999999998 34678887755565544
No 132
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.73 E-value=3.7e-17 Score=190.82 Aligned_cols=226 Identities=18% Similarity=0.217 Sum_probs=177.1
Q ss_pred cccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcC
Q psy14500 428 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 507 (938)
Q Consensus 428 ~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 507 (938)
.++|.+.++..+...+..... ...+++++|++||||+++|++|++...+...+|+.+||+.+........+||
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~-------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg 211 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSR-------SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFG 211 (469)
T ss_pred cceecCHHHHHHHHHHHHHhc-------cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcC
Confidence 467777777777777764331 1237999999999999999999999888889999999999977666778999
Q ss_pred CCCC-CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhh
Q psy14500 508 APPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 586 (938)
Q Consensus 508 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 586 (938)
+..| +.|.... -.+.+..+.+|+||||||+.+++..|..|+++|+++.+...++......++.+|+||+........
T Consensus 212 ~~~g~~~~~~~~--~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 289 (469)
T PRK10923 212 HEKGAFTGANTI--RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ 289 (469)
T ss_pred CCCCCCCCCCcC--CCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHH
Confidence 8766 3333221 123355667899999999999999999999999999988766655556788999999976543322
Q ss_pred hhcchHHHHHHHHHHHHhhccChHHhhcCC-eEEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHh
Q psy14500 587 MEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 663 (938)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~ 663 (938)
.+.|+++|++|++ ..|.+||+.+ +|+..++..++.++....... ...+++++++.|..
T Consensus 290 -----------------~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~ 350 (469)
T PRK10923 290 -----------------EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVE--AKLLHPETEAALTR 350 (469)
T ss_pred -----------------cCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHHh
Confidence 4579999999995 4888888866 789999999888875543321 14689999999988
Q ss_pred hcccccccccccccchHHHHHHH
Q psy14500 664 IGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 664 ~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
|+|+++++.|.++ +++++
T Consensus 351 --~~wpgNv~eL~~~---i~~~~ 368 (469)
T PRK10923 351 --LAWPGNVRQLENT---CRWLT 368 (469)
T ss_pred --CCCCChHHHHHHH---HHHHH
Confidence 8899999999999 77776
No 133
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.73 E-value=8.7e-17 Score=186.48 Aligned_cols=267 Identities=17% Similarity=0.229 Sum_probs=193.8
Q ss_pred ccccccCChHHHHHHHHHhhCCCccccchHHHHHHHH-HHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEE
Q psy14500 384 TLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLN-IENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMF 462 (938)
Q Consensus 384 ~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl 462 (938)
..+.+.++.+++...+....... .+.. ....+.. +...-...++|.+..+..+...+..... ...++++
T Consensus 98 dyl~KP~~~~~L~~~i~~~~~~~--~l~~-~~~~l~~~~~~~~~~~lig~s~~~~~l~~~i~~~a~-------~~~~vli 167 (445)
T TIGR02915 98 DFYQKPIDPDVLKLIVDRAFHLY--TLET-ENRRLQSALGGTALRGLITSSPGMQKICRTIEKIAP-------SDITVLL 167 (445)
T ss_pred EEEeCCCCHHHHHHHHhhhhhhh--hhHH-HHHHhhhhhhcccccceeecCHHHHHHHHHHHHHhC-------CCCCEEE
Confidence 34456678888877666544321 0000 1111111 1111123588999998888888765431 1236899
Q ss_pred eCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCC-ccccccchhHHHHHhCCCEEEEEcccccc
Q psy14500 463 LGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKA 541 (938)
Q Consensus 463 ~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~ 541 (938)
+|++||||+++|++++........+|+.+||..+......+.+||...+. .|... ...+.+..+.+++||||||+.+
T Consensus 168 ~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l 245 (445)
T TIGR02915 168 LGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFGYEKGAFTGAVK--QTLGKIEYAHGGTLFLDEIGDL 245 (445)
T ss_pred ECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcCCCCCCcCCCcc--CCCCceeECCCCEEEEechhhC
Confidence 99999999999999999887778899999999987766667889976553 23211 1223456677899999999999
Q ss_pred CHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEE
Q psy14500 542 NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIV 620 (938)
Q Consensus 542 ~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~ 620 (938)
++.+|..|+++++++.+...++......++.+|+||+.+...... .+.|+++|++|+.. .|.
T Consensus 246 ~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~-----------------~~~~~~~L~~~l~~~~i~ 308 (445)
T TIGR02915 246 PLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA-----------------EGTFREDLFYRIAEISIT 308 (445)
T ss_pred CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHH-----------------cCCccHHHHHHhccceec
Confidence 999999999999999887665555555688999999986654322 45799999999965 788
Q ss_pred ccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 621 FRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 621 f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+||+.+ +|+..++..++.++........ ..+++++++.|.. |+|+.+++.|.++ +++++
T Consensus 309 lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~--~~~~~~a~~~L~~--~~wpgNvreL~~~---i~~a~ 369 (445)
T TIGR02915 309 IPPLRSRDGDAVLLANAFLERFARELKRKT--KGFTDDALRALEA--HAWPGNVRELENK---VKRAV 369 (445)
T ss_pred CCCchhchhhHHHHHHHHHHHHHHHhCCCC--CCCCHHHHHHHHh--CCCCChHHHHHHH---HHHHH
Confidence 999865 7899999888888766543322 5689999999988 8888999999998 77766
No 134
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=3.7e-17 Score=184.58 Aligned_cols=204 Identities=20% Similarity=0.194 Sum_probs=153.0
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC-------cC----
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS-------LL---- 86 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~-------~~---- 86 (938)
.-|+++|||.+|+++|||+.+++.|...+.+++.+| +||+|||||||||+|+++|+.+.+...... ..
T Consensus 4 ~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~ 83 (397)
T PRK14955 4 QVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGE 83 (397)
T ss_pred HHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCC
Confidence 358999999999999999999999999998877777 889999999999999999999965310000 00
Q ss_pred -----------CCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhh
Q psy14500 87 -----------SKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNML 152 (938)
Q Consensus 87 -----------~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L 152 (938)
...++.++... .. ....++.+...+. ......|+||||+|.|.. ..++.|
T Consensus 84 c~~c~~~~~~~~~n~~~~~~~~------~~--~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------~~~~~L 147 (397)
T PRK14955 84 CESCRDFDAGTSLNISEFDAAS------NN--SVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------AAFNAF 147 (397)
T ss_pred CHHHHHHhcCCCCCeEeecccc------cC--CHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------HHHHHH
Confidence 01222222111 01 1224556655553 123356999999999943 456778
Q ss_pred hhhccC--CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhh
Q psy14500 153 KPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELS 230 (938)
Q Consensus 153 ~~~l~~--~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s 230 (938)
+..+++ +..++|++|+... .+.+++.+|+..++|.+++.++....++..+.. .++.++++++..++..+
T Consensus 148 Lk~LEep~~~t~~Il~t~~~~-----kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~----~g~~i~~~al~~l~~~s 218 (397)
T PRK14955 148 LKTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLEEIQQQLQGICEA----EGISVDADALQLIGRKA 218 (397)
T ss_pred HHHHhcCCCCeEEEEEeCChH-----HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHc
Confidence 888876 4677777777654 677899999999999999999998888877664 57889999999999999
Q ss_pred hhccccCCCchhhhhHHHHHHHH
Q psy14500 231 YRYISDRFMPDKAIDLIDEAAAK 253 (938)
Q Consensus 231 ~~~~~~~~~p~~a~~ll~~a~~~ 253 (938)
++.+ +.+...++.+...
T Consensus 219 ~g~l------r~a~~~L~kl~~~ 235 (397)
T PRK14955 219 QGSM------RDAQSILDQVIAF 235 (397)
T ss_pred CCCH------HHHHHHHHHHHHh
Confidence 9887 8888888876654
No 135
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=8.1e-17 Score=183.26 Aligned_cols=203 Identities=21% Similarity=0.233 Sum_probs=153.0
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC-----------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL----------- 86 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~----------- 86 (938)
..|+++|||.+|+++||++.+++.+...+..+..++ +||+||||+|||++|+++|+.+.+........
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 368999999999999999999999999998776655 78999999999999999999986532110000
Q ss_pred ----CCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC-
Q psy14500 87 ----SKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR- 158 (938)
Q Consensus 87 ----~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~- 158 (938)
...++.++.. ...| -..++.+.+.+. ......|+||||+|.|.. +.++.|+..++.
T Consensus 85 ~~~~~~d~~~i~g~------~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------~~~n~LLk~lEep 148 (451)
T PRK06305 85 SSGTSLDVLEIDGA------SHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------EAFNSLLKTLEEP 148 (451)
T ss_pred hcCCCCceEEeecc------ccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--------HHHHHHHHHhhcC
Confidence 1123333311 1111 112333333332 124467999999999943 467788999986
Q ss_pred -CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccC
Q psy14500 159 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 237 (938)
Q Consensus 159 -~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~ 237 (938)
+.+++|++|+... .+.+++.+||..++|.+++.++....++.++++ .++.++++++..++..+++..
T Consensus 149 ~~~~~~Il~t~~~~-----kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~----eg~~i~~~al~~L~~~s~gdl--- 216 (451)
T PRK06305 149 PQHVKFFLATTEIH-----KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ----EGIETSREALLPIARAAQGSL--- 216 (451)
T ss_pred CCCceEEEEeCChH-----hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH---
Confidence 5778888887775 788999999999999999999999988877664 588899999999999999888
Q ss_pred CCchhhhhHHHHHHH
Q psy14500 238 FMPDKAIDLIDEAAA 252 (938)
Q Consensus 238 ~~p~~a~~ll~~a~~ 252 (938)
+.+...++..+.
T Consensus 217 ---r~a~~~Lekl~~ 228 (451)
T PRK06305 217 ---RDAESLYDYVVG 228 (451)
T ss_pred ---HHHHHHHHHHHH
Confidence 888888887654
No 136
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=7.5e-17 Score=187.90 Aligned_cols=204 Identities=20% Similarity=0.212 Sum_probs=154.6
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCC---CC----CcC-----
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEV---PN----SLL----- 86 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~---p~----~~~----- 86 (938)
-|.++|||.+|+++|||+..++.|...+..++.+| +||+||+||||||+|+.+|+.+.+... |. ...
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 57899999999999999999999999988877777 889999999999999999999965320 10 000
Q ss_pred ----------CCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhh
Q psy14500 87 ----------SKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLK 153 (938)
Q Consensus 87 ----------~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~ 153 (938)
...++.++.. ...+ ...++.+.+.+. ......|+||||+|.|. ...++.|+
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~------s~~~--vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~~a~naLL 148 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAA------SNNS--VDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------TAAFNAFL 148 (620)
T ss_pred HHHHHHhccCCCCeEEeccc------ccCC--HHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------HHHHHHHH
Confidence 1122222211 1111 224555555552 22345699999999993 35678899
Q ss_pred hhccC--CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhh
Q psy14500 154 PELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSY 231 (938)
Q Consensus 154 ~~l~~--~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~ 231 (938)
..|+. +.+++|++|+... .+.+++.+|+..++|.+++.++....++.++.. .++.++++++..++..++
T Consensus 149 K~LEePp~~tv~IL~t~~~~-----kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~----egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 149 KTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLDEIQSQLQMICRA----EGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHhCCCCCeEEEEEeCChh-----hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhC
Confidence 99987 4677777777665 788899999999999999999988888877664 578899999999999999
Q ss_pred hccccCCCchhhhhHHHHHHHHH
Q psy14500 232 RYISDRFMPDKAIDLIDEAAAKI 254 (938)
Q Consensus 232 ~~~~~~~~p~~a~~ll~~a~~~~ 254 (938)
+.+ +.+...++..+...
T Consensus 220 Gdl------r~al~eLeKL~~y~ 236 (620)
T PRK14954 220 GSM------RDAQSILDQVIAFS 236 (620)
T ss_pred CCH------HHHHHHHHHHHHhc
Confidence 988 88888888776544
No 137
>KOG0732|consensus
Probab=99.72 E-value=3.8e-17 Score=192.77 Aligned_cols=189 Identities=25% Similarity=0.357 Sum_probs=150.3
Q ss_pred CCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
.|+++=|-+.++.+|.+.+- -.++.++||+||||||||..|+++|..+.++. ....++.-..
T Consensus 263 ~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-----~kisffmrkg 337 (1080)
T KOG0732|consen 263 GFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN-----RKISFFMRKG 337 (1080)
T ss_pred CccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-----cccchhhhcC
Confidence 78888888888888877542 24567899999999999999999999886653 1222332233
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cchhhhhhhhc----cCCceEEEEecC
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPEL----SRGELHCIGATT 168 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l----~~~~i~vI~~tn 168 (938)
.+.. ++|+|+.+.+++.+|++|.. ..|+|+|+||||.|.+.+++... ..+...|+.+| .+|.+++|+|||
T Consensus 338 aD~l--skwvgEaERqlrllFeeA~k-~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigATn 414 (1080)
T KOG0732|consen 338 ADCL--SKWVGEAERQLRLLFEEAQK-TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGATN 414 (1080)
T ss_pred chhh--ccccCcHHHHHHHHHHHHhc-cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcccC
Confidence 3333 68999999999999999985 45999999999999998754322 23556677777 478999999999
Q ss_pred hhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 169 LNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 169 ~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
+++ .+||+++| ||+. ++|+.|+.+.|..|+.-...++ .-.++...+..++..+.+|.
T Consensus 415 Rpd-----a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw----~~~i~~~l~~~la~~t~gy~ 474 (1080)
T KOG0732|consen 415 RPD-----AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKW----EPPISRELLLWLAEETSGYG 474 (1080)
T ss_pred Ccc-----ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCC----CCCCCHHHHHHHHHhccccc
Confidence 999 89999999 9996 9999999999999998665543 34678888899999988887
No 138
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=7.6e-17 Score=184.41 Aligned_cols=203 Identities=22% Similarity=0.253 Sum_probs=153.4
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCC---C----------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN---S---------- 84 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~---~---------- 84 (938)
.+|+++|||.+|++++||+..++.|...+..+..+|+ ||+||+|+|||++|+.+|+.+.+..... .
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 3799999999999999999999999999988777775 7899999999999999999986421110 0
Q ss_pred -cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-
Q psy14500 85 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG- 159 (938)
Q Consensus 85 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~- 159 (938)
.....++.++.+. ..| ...++.+...+. ..+...|+||||+|.|. .+..+.|+..++..
T Consensus 84 ~g~~~d~~eidaas------~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt--------~~a~naLLk~LEepp 147 (486)
T PRK14953 84 KGSFPDLIEIDAAS------NRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT--------KEAFNALLKTLEEPP 147 (486)
T ss_pred cCCCCcEEEEeCcc------CCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcC--------HHHHHHHHHHHhcCC
Confidence 0011333343211 111 112444444443 22345699999999983 35667888888764
Q ss_pred -ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 160 -ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 160 -~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
.+++|.+|+... .+.+++.+||..+.|.+++.++....++.+++. .++.++++++..++..+.+.+
T Consensus 148 ~~~v~Il~tt~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~----egi~id~~al~~La~~s~G~l---- 214 (486)
T PRK14953 148 PRTIFILCTTEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE----EKIEYEEKALDLLAQASEGGM---- 214 (486)
T ss_pred CCeEEEEEECCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 577777777665 678899999999999999999999999888775 578899999999999998877
Q ss_pred CchhhhhHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAA 252 (938)
Q Consensus 239 ~p~~a~~ll~~a~~ 252 (938)
+.+..+++.++.
T Consensus 215 --r~al~~Ldkl~~ 226 (486)
T PRK14953 215 --RDAASLLDQAST 226 (486)
T ss_pred --HHHHHHHHHHHH
Confidence 889999988764
No 139
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.72 E-value=1.2e-16 Score=175.48 Aligned_cols=183 Identities=22% Similarity=0.290 Sum_probs=135.5
Q ss_pred CCCCCccccHHHHHHHHHHHh-----cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQ-----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 102 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~-----~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~ 102 (938)
++|+++|||++.+++|..++. .....+++|+||||||||++|+++|+.+ +..+...+......
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~----------~~~~~~~~~~~~~~-- 68 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM----------GVNLKITSGPALEK-- 68 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeccchhcC--
Confidence 478999999999999888776 3445689999999999999999999988 44444443322211
Q ss_pred cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--------------------CceE
Q psy14500 103 KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--------------------GELH 162 (938)
Q Consensus 103 ~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--------------------~~i~ 162 (938)
.+ .+...+..+ ..+.+|||||+|.+.+ +..+.|...+++ ..+.
T Consensus 69 --~~----~l~~~l~~~---~~~~vl~iDEi~~l~~--------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 69 --PG----DLAAILTNL---EEGDVLFIDEIHRLSP--------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred --ch----hHHHHHHhc---ccCCEEEEehHhhhCH--------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 11 233333333 3356999999999854 233445544432 2377
Q ss_pred EEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCch
Q psy14500 163 CIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 241 (938)
Q Consensus 163 vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 241 (938)
+|++||.+. .+++++.+||.. +.|++|+.+++..+++..+.. .++.++++++..++..+.++. +
T Consensus 132 li~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~----~~~~~~~~al~~ia~~~~G~p------R 196 (305)
T TIGR00635 132 LVGATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL----LNVEIEPEAALEIARRSRGTP------R 196 (305)
T ss_pred EEEecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHHhCCCc------c
Confidence 899999887 789999999975 899999999999999877764 477899999999999988766 8
Q ss_pred hhhhHHHHHHHHH
Q psy14500 242 KAIDLIDEAAAKI 254 (938)
Q Consensus 242 ~a~~ll~~a~~~~ 254 (938)
.+..+++.+....
T Consensus 197 ~~~~ll~~~~~~a 209 (305)
T TIGR00635 197 IANRLLRRVRDFA 209 (305)
T ss_pred hHHHHHHHHHHHH
Confidence 8888888765443
No 140
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.72 E-value=1.4e-16 Score=178.64 Aligned_cols=201 Identities=23% Similarity=0.328 Sum_probs=147.0
Q ss_pred hcCCCCCccccHHHHHHHHHHHhc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~~-------------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
+.-+++++.|.+++++++...+.. ..+.++||+||||||||++|+++|+.+ +..++.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~ 186 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIR 186 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEe
Confidence 444778999999999998886631 335679999999999999999999988 566777
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC---Cccchhhhhhhhc---c----CCceE
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSIDAGNMLKPEL---S----RGELH 162 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~~~~~L~~~l---~----~~~i~ 162 (938)
+..+.+. ..+.|+....++.+|..+.. ..|+||||||+|.+...+... +....+..+...+ + .+++.
T Consensus 187 v~~~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 263 (364)
T TIGR01242 187 VVGSELV--RKYIGEGARLVREIFELAKE-KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVK 263 (364)
T ss_pred cchHHHH--HHhhhHHHHHHHHHHHHHHh-cCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 7766665 35677777778888888764 458899999999997654321 1222333343333 2 45799
Q ss_pred EEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 163 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 163 vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
+|+|||.++ .+|+++++ ||+. |+|+.|+.++|..|++.+........+ ..+..++..+.+|.
T Consensus 264 vI~ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~-----~~~~~la~~t~g~s----- 328 (364)
T TIGR01242 264 VIAATNRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED-----VDLEAIAKMTEGAS----- 328 (364)
T ss_pred EEEecCChh-----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc-----CCHHHHHHHcCCCC-----
Confidence 999999998 89999997 9985 999999999999999877655322211 23566677766554
Q ss_pred chhhhhHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKI 254 (938)
Q Consensus 240 p~~a~~ll~~a~~~~ 254 (938)
++....++..|+..+
T Consensus 329 g~dl~~l~~~A~~~a 343 (364)
T TIGR01242 329 GADLKAICTEAGMFA 343 (364)
T ss_pred HHHHHHHHHHHHHHH
Confidence 556667777666554
No 141
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.72 E-value=2.4e-16 Score=169.29 Aligned_cols=186 Identities=19% Similarity=0.216 Sum_probs=139.2
Q ss_pred CccccHHHHHHHHHHHh---------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 32 PVIGRDDEIRRAIQVLQ---------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~---------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
.++|.+++.+++.++.. ..+..++||+||||||||++|+++++.+..... ....+++.++..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~---~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY---VRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC---cccceEEEecHH
Confidence 68999988777655322 112348999999999999999999998854321 123468888887
Q ss_pred hhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCC-CCCccchhhhhhhhccC--CceEEEEecChhHHH
Q psy14500 97 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK-VEGSIDAGNMLKPELSR--GELHCIGATTLNEYR 173 (938)
Q Consensus 97 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~-~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~~~ 173 (938)
.+.. .+.|..+..+..+|..+. +.+|||||++.|.+.+. ...+.++++.|...|+. +++++|++++.+...
T Consensus 100 ~l~~--~~~g~~~~~~~~~~~~a~----~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~ 173 (284)
T TIGR02880 100 DLVG--QYIGHTAPKTKEILKRAM----GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMD 173 (284)
T ss_pred HHhH--hhcccchHHHHHHHHHcc----CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 7763 567777667777887764 34999999999864321 22345577788888864 478999999887766
Q ss_pred HhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhh
Q psy14500 174 QYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELS 230 (938)
Q Consensus 174 ~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s 230 (938)
.++.++|+|.+||.. |.|++++.+++..|++.++.+. +..++++++..+..+.
T Consensus 174 ~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~----~~~l~~~a~~~L~~~l 227 (284)
T TIGR02880 174 SFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ----QYRFSAEAEEAFADYI 227 (284)
T ss_pred HHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh----ccccCHHHHHHHHHHH
Confidence 777889999999985 9999999999999999988863 4567788777766543
No 142
>KOG2035|consensus
Probab=99.72 E-value=2.9e-16 Score=156.91 Aligned_cols=253 Identities=18% Similarity=0.214 Sum_probs=184.9
Q ss_pred HHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC---------CCeEE
Q psy14500 21 LTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL---------SKKIL 91 (938)
Q Consensus 21 l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~---------~~~~~ 91 (938)
|+++|||+.|+.++++++....+........-+|+|+|||+|+||.|.+.++.+++....++..-. +.. +
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kk-l 81 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKK-L 81 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCce-E
Confidence 789999999999999999999888877767779999999999999999999999986633221000 110 1
Q ss_pred EEeh-hh---hhcCccccchHH-HHHHHHHHHHHhc--------CCCeEEEEeCccccccCCCCCCccchhhhhhhhcc-
Q psy14500 92 LLDI-AL---LLAGTKYRGEFE-DRLKKILKEISNN--------QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS- 157 (938)
Q Consensus 92 ~~~~-~~---l~~~~~~~g~~~-~~l~~~~~~a~~~--------~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~- 157 (938)
+++. ++ +....+..|... --+++++.++.+. ..-.+++|-|+|.|. .+++.+|+..||
T Consensus 82 EistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT--------~dAQ~aLRRTMEk 153 (351)
T KOG2035|consen 82 EISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELT--------RDAQHALRRTMEK 153 (351)
T ss_pred EEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhh--------HHHHHHHHHHHHH
Confidence 1111 00 000011223221 2356666665532 223599999999994 478889999998
Q ss_pred -CCceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcccc
Q psy14500 158 -RGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISD 236 (938)
Q Consensus 158 -~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~ 236 (938)
.+.+++|..+|... .+-+++++||-.|.++.|+.++...++..++++ +++.++.+.+..++.-|+|..
T Consensus 154 Ys~~~RlIl~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~kS~~nL-- 222 (351)
T KOG2035|consen 154 YSSNCRLILVCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAEKSNRNL-- 222 (351)
T ss_pred HhcCceEEEEecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH----hcccCcHHHHHHHHHHhcccH--
Confidence 47899999999887 899999999999999999999999999999886 788999999999999999988
Q ss_pred CCCchhhhhHHHHHHHHHHH-hhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHH
Q psy14500 237 RFMPDKAIDLIDEAAAKIKI-EIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINK 303 (938)
Q Consensus 237 ~~~p~~a~~ll~~a~~~~~~-~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (938)
++|+-+++.++..-.. ...+.+...-+|+-.+++.+..+-. ..+.++|.++++.+.+
T Consensus 223 ----RrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~------eQs~~~L~~vR~~LYe 280 (351)
T KOG2035|consen 223 ----RRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILK------EQSPAKLLEVRGRLYE 280 (351)
T ss_pred ----HHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHh------ccCHHHHHHHHHHHHH
Confidence 8888888777654221 1222344456788777777655432 3455677777777764
No 143
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.72 E-value=1.1e-16 Score=178.67 Aligned_cols=205 Identities=22% Similarity=0.309 Sum_probs=148.0
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 98 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l 98 (938)
..|.++|||.+|++++|++..++.+..++..+..+++||+||||||||++|+++++.+.... .+..++.++++.+
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~ 77 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADF 77 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhh
Confidence 36899999999999999999999999998888777999999999999999999999884321 1223455666543
Q ss_pred hcCcc--------c---cch-------HHHHHHHHHHHHHhc----CCCeEEEEeCccccccCCCCCCccchhhhhhhhc
Q psy14500 99 LAGTK--------Y---RGE-------FEDRLKKILKEISNN----QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL 156 (938)
Q Consensus 99 ~~~~~--------~---~g~-------~~~~l~~~~~~a~~~----~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l 156 (938)
..... + .+. ....++.++...... ..+.+|||||+|.+.. +..+.|...+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------~~~~~L~~~l 149 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------DAQQALRRIM 149 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------HHHHHHHHHH
Confidence 21110 0 000 112334443333221 2345999999998832 3455677776
Q ss_pred cC--CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 157 SR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 157 ~~--~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
+. ....+|.+++.+. .+.+++.+|+..+.|.+|+.++...+++.++.+ .++.++++++..++..+.+.+
T Consensus 150 e~~~~~~~~Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~----~~~~~~~~al~~l~~~~~gdl 220 (337)
T PRK12402 150 EQYSRTCRFIIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA----EGVDYDDDGLELIAYYAGGDL 220 (337)
T ss_pred HhccCCCeEEEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH
Confidence 53 3456777776655 567889999988999999999999999887765 578899999999999987776
Q ss_pred ccCCCchhhhhHHHHHH
Q psy14500 235 SDRFMPDKAIDLIDEAA 251 (938)
Q Consensus 235 ~~~~~p~~a~~ll~~a~ 251 (938)
+.+...++.++
T Consensus 221 ------r~l~~~l~~~~ 231 (337)
T PRK12402 221 ------RKAILTLQTAA 231 (337)
T ss_pred ------HHHHHHHHHHH
Confidence 66666666543
No 144
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.71 E-value=7.4e-17 Score=187.62 Aligned_cols=210 Identities=22% Similarity=0.258 Sum_probs=148.8
Q ss_pred HhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 17 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 17 ~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
...+|.++|||.+|++++|++..++.+...+..+.+.++||+||||||||++|+++++...+........+.+++.+++.
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 46699999999999999999999999999888888899999999999999999999986543221111124577888865
Q ss_pred hhhcCcc-----ccchHH----------------HHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhh
Q psy14500 97 LLLAGTK-----YRGEFE----------------DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE 155 (938)
Q Consensus 97 ~l~~~~~-----~~g~~~----------------~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~ 155 (938)
......+ ..|... ......+.. ....+|||||++.|. .+.++.|+..
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~----a~gG~L~IdEI~~L~--------~~~q~~LL~~ 198 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR----AHGGVLFIDEIGELH--------PVQMNKLLKV 198 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhc----cCCcEEEEechhhCC--------HHHHHHHHHH
Confidence 3210000 000000 000011111 123599999999994 3566777766
Q ss_pred ccCC------------------------------ceEEEEecCh-hHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHH
Q psy14500 156 LSRG------------------------------ELHCIGATTL-NEYRQYIEKDAAFERRFQKILVEEPDIEETISILR 204 (938)
Q Consensus 156 l~~~------------------------------~i~vI~~tn~-~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~ 204 (938)
++.+ ++++|++|+. ++ .+++++++||..+.|++++.+++..|++
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~-----~L~paLrsR~~~I~f~pL~~eei~~Il~ 273 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPE-----EIPPALRSRCVEIFFRPLLDEEIKEIAK 273 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcc-----cCChHHhhhhheeeCCCCCHHHHHHHHH
Confidence 6432 2466776665 44 7999999999999999999999999999
Q ss_pred hhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHH
Q psy14500 205 GLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 254 (938)
Q Consensus 205 ~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 254 (938)
..+++ .++.+++++++.+...+. . .+.+..+++.++..+
T Consensus 274 ~~a~k----~~i~is~~al~~I~~y~~-n------~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 274 NAAEK----IGINLEKHALELIVKYAS-N------GREAVNIVQLAAGIA 312 (531)
T ss_pred HHHHH----cCCCcCHHHHHHHHHhhh-h------HHHHHHHHHHHHHHH
Confidence 88876 467899999987776543 1 277778887776543
No 145
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=1.1e-16 Score=178.58 Aligned_cols=201 Identities=19% Similarity=0.293 Sum_probs=136.9
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce--EEeccc---cccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDMS---EFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~~---~~~~~~ 500 (938)
.+.++||++++..+..++...+.+ +.+||+||+|||||++|+.+|+.++....+- .+..|. .+....
T Consensus 17 f~dvVGQe~iv~~L~~~i~~~ri~--------ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~ 88 (484)
T PRK14956 17 FRDVIHQDLAIGALQNALKSGKIG--------HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGI 88 (484)
T ss_pred HHHHhChHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccC
Confidence 356899999999999999865432 3589999999999999999999985432110 011111 111100
Q ss_pred hhhhhcC-CCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEE
Q psy14500 501 SISRLIG-APPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 575 (938)
Q Consensus 501 ~~~~l~g-~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 575 (938)
.. .++- ......|.+..+.+...+. ...+.|+||||+|.++..++|+||+.||+ +..+++||+
T Consensus 89 ~~-dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-----------Pp~~viFIL 156 (484)
T PRK14956 89 SS-DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-----------PPAHIVFIL 156 (484)
T ss_pred Cc-cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-----------CCCceEEEe
Confidence 00 0000 0001223333334433333 23467999999999999999999999997 567888998
Q ss_pred ecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcH
Q psy14500 576 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 655 (938)
Q Consensus 576 ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 655 (938)
+|+.. ..+.+.+++|| ..+.|.+++.+++.+.+...+. ..+ +.+++
T Consensus 157 aTte~------------------------~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~-------~Eg--i~~e~ 202 (484)
T PRK14956 157 ATTEF------------------------HKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCK-------IEN--VQYDQ 202 (484)
T ss_pred ecCCh------------------------hhccHHHHhhh-heeeecCCCHHHHHHHHHHHHH-------HcC--CCCCH
Confidence 88852 24778999999 5899999999988887555443 345 67899
Q ss_pred HHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 656 AALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 656 ~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+++..|+.. +-||++..+..|++++
T Consensus 203 eAL~~Ia~~------S~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 203 EGLFWIAKK------GDGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHH------cCChHHHHHHHHHHHH
Confidence 999999983 3566666655566655
No 146
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.71 E-value=2.6e-16 Score=167.97 Aligned_cols=182 Identities=18% Similarity=0.322 Sum_probs=126.5
Q ss_pred ccChHHHHHHHHHHHHh-------hhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc----CCCceEEecccccc
Q psy14500 429 VVGQDEAISAVSNAIRR-------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----NEESIIRIDMSEFI 497 (938)
Q Consensus 429 viGq~~~~~~l~~~l~~-------~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~----~~~~~~~~~~~~~~ 497 (938)
++|++.+++.+...... ...|...+..+ .+++|+||||||||++|+++|+.++. ...+++.++++++.
T Consensus 8 ~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~ 86 (261)
T TIGR02881 8 MVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQV-LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLV 86 (261)
T ss_pred hcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc-ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhh
Confidence 78999998887755422 23344433333 48999999999999999999998743 22356666665543
Q ss_pred chhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccC--------HHHHHHHHHhhcCCceecCCCceeecC
Q psy14500 498 EKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKAN--------SDVFNILLQILDDGRLTDNRGRTINFR 569 (938)
Q Consensus 498 ~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~~~ 569 (938)
.. |+|... ..+.+.+..+.++||||||++.+. .+.++.|++.++++ ..
T Consensus 87 ~~------------~~g~~~-~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~-----------~~ 142 (261)
T TIGR02881 87 GE------------YIGHTA-QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN-----------RN 142 (261)
T ss_pred hh------------hccchH-HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc-----------CC
Confidence 21 334332 234566677778999999999875 46789999999862 23
Q ss_pred CeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCC
Q psy14500 570 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNM 649 (938)
Q Consensus 570 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~ 649 (938)
+.++|+++....... ...++|++.+||+..|.|++++.+++.+|+...+.. .+
T Consensus 143 ~~~vila~~~~~~~~-------------------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~-------~~- 195 (261)
T TIGR02881 143 EFVLILAGYSDEMDY-------------------FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE-------RE- 195 (261)
T ss_pred CEEEEecCCcchhHH-------------------HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH-------cC-
Confidence 455666655321100 123678999999889999999999999998776643 22
Q ss_pred eEEEcHHHHHHHHh
Q psy14500 650 DLKISKAALKKISN 663 (938)
Q Consensus 650 ~l~~~~~~~~~L~~ 663 (938)
..++++++.+|.+
T Consensus 196 -~~l~~~a~~~l~~ 208 (261)
T TIGR02881 196 -YKLTEEAKWKLRE 208 (261)
T ss_pred -CccCHHHHHHHHH
Confidence 5688999988865
No 147
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.71 E-value=2.1e-16 Score=194.02 Aligned_cols=181 Identities=14% Similarity=0.128 Sum_probs=131.2
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc-------------c------------
Q psy14500 49 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT-------------K------------ 103 (938)
Q Consensus 49 ~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~-------------~------------ 103 (938)
...+++|||+||||||||.||+++|... +.+++.++.+.+.... .
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 4566789999999999999999999998 8889999988877421 0
Q ss_pred --------------ccchH--HHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc-------CCc
Q psy14500 104 --------------YRGEF--EDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-------RGE 160 (938)
Q Consensus 104 --------------~~g~~--~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~-------~~~ 160 (938)
+.+.. ...++.+|+.|++. .||||||||||.+...... ....+.|+..|. ..+
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk~-SPCIIFIDEIDaL~~~ds~---~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKAM-SPCIIWIPNIHDLNVNESN---YLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHHC-CCeEEEEEchhhcCCCccc---eehHHHHHHHhccccccCCCCC
Confidence 01111 22478899999865 5999999999999765211 112345555553 246
Q ss_pred eEEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHH--HHHHHHHhhhhccc
Q psy14500 161 LHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDP--AIVAASELSYRYIS 235 (938)
Q Consensus 161 i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~--~l~~~~~~s~~~~~ 235 (938)
|+||||||.++ .+||||+| ||+. |.++.|+..+|.+++..+... .++.+.+. .+..++..+.||.
T Consensus 1773 VIVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t----kg~~L~~~~vdl~~LA~~T~GfS- 1842 (2281)
T CHL00206 1773 ILVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT----RGFHLEKKMFHTNGFGSITMGSN- 1842 (2281)
T ss_pred EEEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh----cCCCCCcccccHHHHHHhCCCCC-
Confidence 99999999999 99999999 9997 999999999999988754321 12333322 3567777766655
Q ss_pred cCCCchhhhhHHHHHHHHHHHh
Q psy14500 236 DRFMPDKAIDLIDEAAAKIKIE 257 (938)
Q Consensus 236 ~~~~p~~a~~ll~~a~~~~~~~ 257 (938)
+++...++.+|+..+...
T Consensus 1843 ----GADLanLvNEAaliAirq 1860 (2281)
T CHL00206 1843 ----ARDLVALTNEALSISITQ 1860 (2281)
T ss_pred ----HHHHHHHHHHHHHHHHHc
Confidence 677778888877665443
No 148
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.71 E-value=3e-16 Score=182.83 Aligned_cols=226 Identities=16% Similarity=0.227 Sum_probs=176.3
Q ss_pred cccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcC
Q psy14500 428 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 507 (938)
Q Consensus 428 ~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 507 (938)
.++|.+..+..+...+...... ..++++.|++||||+++|++++....+.+.+|+.++|..+........+||
T Consensus 144 ~ii~~S~~~~~~~~~~~~~a~~-------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg 216 (457)
T PRK11361 144 HILTNSPAMMDICKDTAKIALS-------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFG 216 (457)
T ss_pred ceecccHHHhHHHHHHHHHcCC-------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcC
Confidence 5889888888887777655422 237999999999999999999998877788999999999987766778999
Q ss_pred CCCCCc-cccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhh
Q psy14500 508 APPGYI-GYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 586 (938)
Q Consensus 508 ~~~~~~-g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 586 (938)
+..+.. |.... ..+.+..+.+++||||||+.+++..|..|+.+++++.+...++......++.+|+|||.+...+.+
T Consensus 217 ~~~~~~~~~~~~--~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~ 294 (457)
T PRK11361 217 HEKGAFTGAQTL--RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK 294 (457)
T ss_pred CCCCCCCCCCCC--CCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHH
Confidence 865532 22211 123455677899999999999999999999999998877655544445678999999986654433
Q ss_pred hhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHh
Q psy14500 587 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 663 (938)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~ 663 (938)
.+.|++++++|+.. .|..||+.+ +|+..++..++.++....... .+.+++++++.|..
T Consensus 295 -----------------~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~ 355 (457)
T PRK11361 295 -----------------EGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRD--IIDIDPMAMSLLTA 355 (457)
T ss_pred -----------------cCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHHc
Confidence 45789999999965 788888874 788888888888876543321 25699999999988
Q ss_pred hcccccccccccccchHHHHHHH
Q psy14500 664 IGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 664 ~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
|+|+.+++.+.++ +++++
T Consensus 356 --~~wpgNv~eL~~~---~~~~~ 373 (457)
T PRK11361 356 --WSWPGNIRELSNV---IERAV 373 (457)
T ss_pred --CCCCCcHHHHHHH---HHHHH
Confidence 8889999999988 77766
No 149
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.71 E-value=9.2e-17 Score=182.21 Aligned_cols=200 Identities=24% Similarity=0.327 Sum_probs=151.1
Q ss_pred CCCCCccccHHHHHHHHHHH---h---------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 28 GKLDPVIGRDDEIRRAIQVL---Q---------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l---~---------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
-+|.++-|.+++.+.+.+.+ . ..-+.++||+||||||||.||+++|.+. +.+++.++-
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccc
Confidence 48999999998776666644 3 2446789999999999999999999988 888998888
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC---Cccc---hhhhhhhhcc----CCceEEEE
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSID---AGNMLKPELS----RGELHCIG 165 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~---~~~~L~~~l~----~~~i~vI~ 165 (938)
++.+ ..++|-...+++.+|.+++.+ .|||+||||+|.....+..+ +..+ ..|.|+..|+ +..|++|+
T Consensus 217 S~FV--emfVGvGAsRVRdLF~qAkk~-aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 217 SDFV--EMFVGVGASRVRDLFEQAKKN-APCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred hhhh--hhhcCCCcHHHHHHHHHhhcc-CCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 8877 456777777899999999854 48999999999998776422 2222 4455555553 34699999
Q ss_pred ecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchh
Q psy14500 166 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 242 (938)
Q Consensus 166 ~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 242 (938)
+||+++ -+|+||+| ||+. |.++.|+...|.+|++-+.+.......+ + +..+++.+.++. ++.
T Consensus 294 aTNRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~V--d---l~~iAr~tpGfs-----GAd 358 (596)
T COG0465 294 ATNRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDV--D---LKKIARGTPGFS-----GAD 358 (596)
T ss_pred cCCCcc-----cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcC--C---HHHHhhhCCCcc-----cch
Confidence 999999 79999999 9997 9999999999999999666543322222 2 223666666554 566
Q ss_pred hhhHHHHHHHHHH
Q psy14500 243 AIDLIDEAAAKIK 255 (938)
Q Consensus 243 a~~ll~~a~~~~~ 255 (938)
...++.+++....
T Consensus 359 L~nl~NEAal~aa 371 (596)
T COG0465 359 LANLLNEAALLAA 371 (596)
T ss_pred HhhhHHHHHHHHH
Confidence 6777777665543
No 150
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.71 E-value=1.2e-15 Score=179.55 Aligned_cols=152 Identities=26% Similarity=0.338 Sum_probs=110.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhH----HHH-HhCCCEEE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLT----EIV-RRKPYSLI 533 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~----~~~-~~~~~~vl 533 (938)
++||.|.||+|||++..++|+.. +..++++|+++.++ +..+||+..... +++++. .++ .-..+++|
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~t---G~kliRINLSeQTd---L~DLfGsd~Pve---~~Gef~w~dapfL~amr~G~WV 1615 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKT---GKKLIRINLSEQTD---LCDLFGSDLPVE---EGGEFRWMDAPFLHAMRDGGWV 1615 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHh---cCceEEeeccccch---HHHHhCCCCCcc---cCceeEecccHHHHHhhcCCEE
Confidence 69999999999999999999998 88999999998665 567888754322 222221 112 22345799
Q ss_pred EEccccccCHHHHHHHHHhhcC-CceecCC-Cceee-cCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChH
Q psy14500 534 LLDEIEKANSDVFNILLQILDD-GRLTDNR-GRTIN-FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPE 610 (938)
Q Consensus 534 ~lDEid~~~~~~~~~Ll~~le~-g~~~~~~-g~~~~-~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 610 (938)
++||+.-+++++.+.|...|+. +....+. ..+++ ..+.++.+|-|.... -.. ++.++..
T Consensus 1616 lLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~q-ggG-----------------RKgLPkS 1677 (4600)
T COG5271 1616 LLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQ-GGG-----------------RKGLPKS 1677 (4600)
T ss_pred EeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhc-CCC-----------------cccCCHH
Confidence 9999999999999999999996 3333332 33444 366677677774211 000 4568899
Q ss_pred HhhcCCeEEEccCCCHHHHHHHHHHHHH
Q psy14500 611 FINRIDDIIVFRYLNRKNILSIANIQLN 638 (938)
Q Consensus 611 l~~R~~~~i~f~~l~~e~~~~i~~~~l~ 638 (938)
|++|| .+|....++.+++..|+.....
T Consensus 1678 F~nRF-svV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1678 FLNRF-SVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred Hhhhh-heEEecccccchHHHHHHhhCC
Confidence 99999 5999999999999999886554
No 151
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.71 E-value=3.1e-16 Score=176.39 Aligned_cols=204 Identities=23% Similarity=0.273 Sum_probs=152.7
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC-------------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------- 84 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~------------- 84 (938)
.+|+++|||.+|+++||+++.++.+...+..+..++ +||+||||+|||++|+++++.+.+...+..
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 379999999999999999999999999988766665 689999999999999999999865421100
Q ss_pred -cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--
Q psy14500 85 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 158 (938)
Q Consensus 85 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 158 (938)
.....++.++... . .....++.++..+... .+..|++|||+|.+. ....+.|+..++.
T Consensus 82 ~~~~~~~~~~~~~~------~--~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~--------~~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 82 SGSSLDVIEIDAAS------N--NGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS--------KSAFNALLKTLEEPP 145 (355)
T ss_pred cCCCCCEEEeeccc------c--CCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC--------HHHHHHHHHHHhCCc
Confidence 0012233333321 0 1122356666665422 334699999999883 2456678888865
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
..+++|++|+... .+.+++.+||..++|++|+.++...+++..+++ .++.++++++..++..+++..
T Consensus 146 ~~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~g~~---- 212 (355)
T TIGR02397 146 EHVVFILATTEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILDK----EGIKIEDEALELIARAADGSL---- 212 (355)
T ss_pred cceeEEEEeCCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCh----
Confidence 4677788887766 678899999999999999999999999887765 578899999999999987766
Q ss_pred CchhhhhHHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAAK 253 (938)
Q Consensus 239 ~p~~a~~ll~~a~~~ 253 (938)
+.+...++.+...
T Consensus 213 --~~a~~~lekl~~~ 225 (355)
T TIGR02397 213 --RDALSLLDQLISF 225 (355)
T ss_pred --HHHHHHHHHHHhh
Confidence 8888888776653
No 152
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.7e-16 Score=184.56 Aligned_cols=202 Identities=19% Similarity=0.193 Sum_probs=154.1
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCC-CCcEEEcCCCChHHHHHHHHHHHHHcCCCC-CCcCCC--------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSK-NNPVLIGEPGVGKTAIVEGLAQRIINGEVP-NSLLSK-------- 88 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~-~~vLL~Gp~GtGKT~la~~la~~l~~~~~p-~~~~~~-------- 88 (938)
.+|.++|||++|++++|++..++.|..++..++. +++||+||+|+|||++|+++|+.+.+.... .....|
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 4789999999999999999999999998887654 678999999999999999999998653210 000011
Q ss_pred -------eEEEEehhhhhcCccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccC
Q psy14500 89 -------KILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR 158 (938)
Q Consensus 89 -------~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~ 158 (938)
.++.++.. .+.....++.++..+... ....|+||||+|.|. .+.++.|+..++.
T Consensus 84 i~~g~h~D~~ei~~~--------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------~~a~naLLK~LEe 147 (620)
T PRK14948 84 IAAGNALDVIEIDAA--------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------TAAFNALLKTLEE 147 (620)
T ss_pred HhcCCCccEEEEecc--------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------HHHHHHHHHHHhc
Confidence 22333221 111223567777665422 334699999999993 3577889999986
Q ss_pred --CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcccc
Q psy14500 159 --GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISD 236 (938)
Q Consensus 159 --~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~ 236 (938)
+.+++|++|+... .+.+++++||..++|..++.++....+..++.+ .++.++++++..++..+++.+
T Consensus 148 Pp~~tvfIL~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k----egi~is~~al~~La~~s~G~l-- 216 (620)
T PRK14948 148 PPPRVVFVLATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK----ESIEIEPEALTLVAQRSQGGL-- 216 (620)
T ss_pred CCcCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH--
Confidence 4688888888766 678899999999999999999888888877664 578899999999999998877
Q ss_pred CCCchhhhhHHHHHH
Q psy14500 237 RFMPDKAIDLIDEAA 251 (938)
Q Consensus 237 ~~~p~~a~~ll~~a~ 251 (938)
+.+..+++...
T Consensus 217 ----r~A~~lLekls 227 (620)
T PRK14948 217 ----RDAESLLDQLS 227 (620)
T ss_pred ----HHHHHHHHHHH
Confidence 88888887643
No 153
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=2.8e-16 Score=184.54 Aligned_cols=204 Identities=20% Similarity=0.197 Sum_probs=158.5
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCC--------------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN-------------- 83 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~-------------- 83 (938)
..++++|||.+|+++|||++.++.|...+..+..+| +||+||+|+|||++|+.+|+.+.+.....
T Consensus 5 ~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~ 84 (614)
T PRK14971 5 IVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAF 84 (614)
T ss_pred HHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHH
Confidence 357899999999999999999999999998887777 68999999999999999999986432100
Q ss_pred -CcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccC-
Q psy14500 84 -SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR- 158 (938)
Q Consensus 84 -~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~- 158 (938)
......++.++.... .....++.++..+... +...|+||||+|.|. .+.++.|+.+|+.
T Consensus 85 ~~~~~~n~~~ld~~~~--------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------~~a~naLLK~LEep 148 (614)
T PRK14971 85 NEQRSYNIHELDAASN--------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------QAAFNAFLKTLEEP 148 (614)
T ss_pred hcCCCCceEEeccccc--------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------HHHHHHHHHHHhCC
Confidence 011123344433211 1122466666655421 235699999999993 3678889999986
Q ss_pred -CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccC
Q psy14500 159 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 237 (938)
Q Consensus 159 -~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~ 237 (938)
...++|++|+... .+.+++++||..++|.+++.++....++.++.+ .++.++++++..++..+++.+
T Consensus 149 p~~tifIL~tt~~~-----kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~----egi~i~~~al~~La~~s~gdl--- 216 (614)
T PRK14971 149 PSYAIFILATTEKH-----KILPTILSRCQIFDFNRIQVADIVNHLQYVASK----EGITAEPEALNVIAQKADGGM--- 216 (614)
T ss_pred CCCeEEEEEeCCch-----hchHHHHhhhheeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH---
Confidence 4678888887665 788999999999999999999999998887775 588999999999999999888
Q ss_pred CCchhhhhHHHHHHHH
Q psy14500 238 FMPDKAIDLIDEAAAK 253 (938)
Q Consensus 238 ~~p~~a~~ll~~a~~~ 253 (938)
+.+...++..+..
T Consensus 217 ---r~al~~Lekl~~y 229 (614)
T PRK14971 217 ---RDALSIFDQVVSF 229 (614)
T ss_pred ---HHHHHHHHHHHHh
Confidence 8888888876644
No 154
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=5.3e-16 Score=174.67 Aligned_cols=204 Identities=22% Similarity=0.248 Sum_probs=151.6
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCC-CcEEEcCCCChHHHHHHHHHHHHHcCCCCCC--cCCCeEEEEeh
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKN-NPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--LLSKKILLLDI 95 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~-~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~--~~~~~~~~~~~ 95 (938)
..|.+||||.+|++++|++..++.+...+..+..+ ++||+||||+|||++|+++++.+.+...+.. .....++.++.
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 46899999999999999999999999998876544 6899999999999999999998855322111 11222333321
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChh
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLN 170 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~ 170 (938)
.. . .....++.++.++.. ..++.|+||||+|.+.. ...+.|+..++. ...++|++|+..
T Consensus 85 ~~------~--~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 85 AS------N--NSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------AAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred cc------C--CCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------HHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 11 0 112246666665542 13356999999998833 345677777765 346677777766
Q ss_pred HHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHH
Q psy14500 171 EYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 171 ~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 250 (938)
. .+.+++.+||..++|++|+.++...++...+.+ .++.++++++..++..+++.+ +.+...++..
T Consensus 149 ~-----kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~----~g~~i~~~al~~l~~~~~gdl------r~~~~~lekl 213 (367)
T PRK14970 149 H-----KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVK----EGIKFEDDALHIIAQKADGAL------RDALSIFDRV 213 (367)
T ss_pred c-----cCCHHHHhcceeEecCCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCCH------HHHHHHHHHH
Confidence 5 788999999999999999999999988877765 588999999999999988877 8888888776
Q ss_pred HHH
Q psy14500 251 AAK 253 (938)
Q Consensus 251 ~~~ 253 (938)
+..
T Consensus 214 ~~y 216 (367)
T PRK14970 214 VTF 216 (367)
T ss_pred HHh
Confidence 643
No 155
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.70 E-value=2.6e-16 Score=174.34 Aligned_cols=198 Identities=24% Similarity=0.315 Sum_probs=147.8
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 98 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l 98 (938)
..|+++|||.+|++++|++++++.+..++..+..++++|+||||||||++++++++.+..... ...++.++.+..
T Consensus 5 ~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~~ 79 (319)
T PRK00440 5 EIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASDE 79 (319)
T ss_pred CccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEeccccc
Confidence 479999999999999999999999999998887788999999999999999999998843211 123344433221
Q ss_pred hcCccccchHHHHHHHHHHHHHh----c-CCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhH
Q psy14500 99 LAGTKYRGEFEDRLKKILKEISN----N-QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNE 171 (938)
Q Consensus 99 ~~~~~~~g~~~~~l~~~~~~a~~----~-~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~ 171 (938)
. + .. .+...+..... . ..+.+++|||+|.+.. +.++.|...++. ....+|.++|...
T Consensus 80 ~------~-~~-~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------~~~~~L~~~le~~~~~~~lIl~~~~~~ 143 (319)
T PRK00440 80 R------G-ID-VIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------DAQQALRRTMEMYSQNTRFILSCNYSS 143 (319)
T ss_pred c------c-hH-HHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------HHHHHHHHHHhcCCCCCeEEEEeCCcc
Confidence 1 0 00 12222222211 1 2356999999999843 344567766663 4567777777665
Q ss_pred HHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHH
Q psy14500 172 YRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 251 (938)
Q Consensus 172 ~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 251 (938)
.+.+++.+|+..++|++++.++...+++.++.+ .++.++++++..++..+++.+ +.+...++.++
T Consensus 144 -----~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~----~~~~i~~~al~~l~~~~~gd~------r~~~~~l~~~~ 208 (319)
T PRK00440 144 -----KIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN----EGIEITDDALEAIYYVSEGDM------RKAINALQAAA 208 (319)
T ss_pred -----ccchhHHHHhheeeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHH
Confidence 677889999999999999999999999887765 578899999999999998877 88888887665
Q ss_pred H
Q psy14500 252 A 252 (938)
Q Consensus 252 ~ 252 (938)
.
T Consensus 209 ~ 209 (319)
T PRK00440 209 A 209 (319)
T ss_pred H
Confidence 4
No 156
>PRK04132 replication factor C small subunit; Provisional
Probab=99.68 E-value=2.7e-14 Score=170.13 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=122.1
Q ss_pred EEEEeC--CCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHh-----CC
Q psy14500 459 SFMFLG--PTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR-----KP 529 (938)
Q Consensus 459 ~iLl~G--ppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-----~~ 529 (938)
+-+..| |++.|||++|++||+.+++. +.+++.+|.++......+...+ ..+... .+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iI---------------k~~a~~~~~~~~~ 630 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKV---------------KEFARTKPIGGAS 630 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHH---------------HHHHhcCCcCCCC
Confidence 457779 99999999999999999775 4578999998754433333221 111111 13
Q ss_pred CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccCh
Q psy14500 530 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 609 (938)
Q Consensus 530 ~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 609 (938)
+.|+||||+|.+++++|++|++.||+ +..++.||++||... .+.+
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEe-----------p~~~~~FILi~N~~~------------------------kIi~ 675 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCNYSS------------------------KIIE 675 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhC-----------CCCCeEEEEEeCChh------------------------hCch
Confidence 47999999999999999999999996 557788999999643 3668
Q ss_pred HHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 610 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 610 ~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
++.+|| .++.|.|++.+++...+...+. ..+ +.++++++..|+. .+-||+..++..|+.+.
T Consensus 676 tIrSRC-~~i~F~~ls~~~i~~~L~~I~~-------~Eg--i~i~~e~L~~Ia~------~s~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 676 PIQSRC-AIFRFRPLRDEDIAKRLRYIAE-------NEG--LELTEEGLQAILY------IAEGDMRRAINILQAAA 736 (846)
T ss_pred HHhhhc-eEEeCCCCCHHHHHHHHHHHHH-------hcC--CCCCHHHHHHHHH------HcCCCHHHHHHHHHHHH
Confidence 899999 5999999999999888554432 334 5678999999988 34578877766666544
No 157
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.68 E-value=5.2e-16 Score=178.58 Aligned_cols=201 Identities=16% Similarity=0.245 Sum_probs=135.0
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC----ce-EEeccccccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SI-IRIDMSEFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~----~~-~~~~~~~~~~~~ 500 (938)
.++|+||+++++.|.+++...+. .+.+||+||+|||||++|+++++.++.... ++ .+-.|..+....
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL--------~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRL--------HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGR 86 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCC
Confidence 46789999999999999875442 235799999999999999999999954211 10 001111111100
Q ss_pred hhhhhcC-CCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEE
Q psy14500 501 SISRLIG-APPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 575 (938)
Q Consensus 501 ~~~~l~g-~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 575 (938)
. ..++- ......|.++.+.+.+.+. ...+.|+||||+|.|+...+|.||+.||+ ...+++||+
T Consensus 87 h-~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-----------PP~~v~FIL 154 (830)
T PRK07003 87 F-VDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPPHVKFIL 154 (830)
T ss_pred C-ceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-----------cCCCeEEEE
Confidence 0 00000 0001122222233333332 24468999999999999999999999997 567888999
Q ss_pred ecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcH
Q psy14500 576 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 655 (938)
Q Consensus 576 ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 655 (938)
+||... ++.+.+++|| ..|.|.+++.+++.+.+...+. .++ +.+++
T Consensus 155 aTtd~~------------------------KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~-------~Eg--I~id~ 200 (830)
T PRK07003 155 ATTDPQ------------------------KIPVTVLSRC-LQFNLKQMPAGHIVSHLERILG-------EER--IAFEP 200 (830)
T ss_pred EECChh------------------------hccchhhhhe-EEEecCCcCHHHHHHHHHHHHH-------HcC--CCCCH
Confidence 998633 4678999999 6999999999999988655443 345 67899
Q ss_pred HHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 656 AALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 656 ~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+++..|++.+ -|++...+..+.+.+
T Consensus 201 eAL~lIA~~A------~GsmRdALsLLdQAi 225 (830)
T PRK07003 201 QALRLLARAA------QGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 9999998833 456655544455544
No 158
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=4.8e-16 Score=174.98 Aligned_cols=202 Identities=20% Similarity=0.247 Sum_probs=155.7
Q ss_pred CccccHHHHHHHHHHHhc------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc---
Q psy14500 32 PVIGRDDEIRRAIQVLQR------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT--- 102 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~--- 102 (938)
+-.|-+++.++++++|+- ...+-+||+||||+|||+|++++|+.+ +..++.++++.+...+
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhc
Confidence 678999999999998862 222446899999999999999999999 8899999987664332
Q ss_pred ----cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc-----------------CCce
Q psy14500 103 ----KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-----------------RGEL 161 (938)
Q Consensus 103 ----~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~-----------------~~~i 161 (938)
.|.|.+..++-..+..+...+ | +++|||||.|..+- ..+-+.+|+++|. -.+|
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~N-P-v~LLDEIDKm~ss~----rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKN-P-VFLLDEIDKMGSSF----RGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcC-C-eEEeechhhccCCC----CCChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 366777767766677776444 3 89999999996543 2234456777772 1368
Q ss_pred EEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhh-hhhhccc-----CCCCCHHHHHHHHHhhhhccc
Q psy14500 162 HCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQ-KKYEVHH-----GVEITDPAIVAASELSYRYIS 235 (938)
Q Consensus 162 ~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~-~~~~~~~-----~~~i~~~~l~~~~~~s~~~~~ 235 (938)
.||+|+|..+ .++.+|++|+.+|++.-++.+|..+|.+.++ .+.-..+ .+.++++++..+++...+..+
T Consensus 468 mFiaTANsl~-----tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAG 542 (782)
T COG0466 468 MFIATANSLD-----TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAG 542 (782)
T ss_pred EEEeecCccc-----cCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhh
Confidence 9999999988 8999999999999999999999999997554 2222223 367999999999999888887
Q ss_pred cCCCchhhhhHHHHHHHHH
Q psy14500 236 DRFMPDKAIDLIDEAAAKI 254 (938)
Q Consensus 236 ~~~~p~~a~~ll~~a~~~~ 254 (938)
-|.+.+....+++.++...
T Consensus 543 VR~LeR~i~ki~RK~~~~i 561 (782)
T COG0466 543 VRNLEREIAKICRKAAKKI 561 (782)
T ss_pred hhHHHHHHHHHHHHHHHHH
Confidence 7777777777776665543
No 159
>KOG2170|consensus
Probab=99.68 E-value=5.7e-16 Score=157.23 Aligned_cols=240 Identities=22% Similarity=0.319 Sum_probs=162.3
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
+..|+..|...++||.-+++.|..+++.... ...|++|+ .+-|+|+|||||+.+++.||+.++..+.. +.+.
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~-n~~p~KPL-vLSfHG~tGTGKN~Va~iiA~n~~~~Gl~------S~~V 144 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWA-NPNPRKPL-VLSFHGWTGTGKNYVAEIIAENLYRGGLR------SPFV 144 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhc-CCCCCCCe-EEEecCCCCCchhHHHHHHHHHHHhcccc------chhH
Confidence 5678889999999999999999999986654 34588887 67799999999999999999999766543 2222
Q ss_pred chhhhhhhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEE
Q psy14500 498 EKHSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 575 (938)
Q Consensus 498 ~~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 575 (938)
.......-|-++.-..-|.+ .+.+.+.+..++.++++|||+|||++++.+.|-..|+.-...+ -+++.++|||+
T Consensus 145 ~~fvat~hFP~~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~----gv~frkaIFIf 220 (344)
T KOG2170|consen 145 HHFVATLHFPHASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVS----GVDFRKAIFIF 220 (344)
T ss_pred HHhhhhccCCChHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccccc----cccccceEEEE
Confidence 11111111111100011111 2455667788999999999999999999999999998522222 25889999999
Q ss_pred ecCCCchhhhhhhcc-----------hHHHHHHHHHHHHh----hcc-ChHHh--hcCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 576 TSNLGSDKIKEMEKG-----------DKEIIKLAVMNEVK----IYF-RPEFI--NRIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 576 ttn~~~~~~~~~~~~-----------~~~~~~~~~~~~l~----~~~-~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
-||.+.+.+.++..+ ....++..++.... ..+ ...++ .++|.+|||.|+++.++..+++..+
T Consensus 221 LSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el 300 (344)
T KOG2170|consen 221 LSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAEL 300 (344)
T ss_pred EcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHH
Confidence 999999988876432 12222322222111 111 11222 5788899999999999999966554
Q ss_pred HHHHHHHHccCCeEEEcHHHHHHHHhh--cccccccccccccc
Q psy14500 638 NILKNKLLKMNMDLKISKAALKKISNI--GFDLIYGARDVHGC 678 (938)
Q Consensus 638 ~~~~~~~~~~~~~l~~~~~~~~~L~~~--~~~~~~~~~dl~~~ 678 (938)
+.+| +..+++.++.+++. -|+...-+-...||
T Consensus 301 -------~~rg--~~~d~~~~erva~~l~ffp~~~k~Fs~sGC 334 (344)
T KOG2170|consen 301 -------RKRG--LAPDQDFVERVANSLSFFPESSKLFSSSGC 334 (344)
T ss_pred -------Hhcc--cccchHHHHHHHHhhcccccccceeecccc
Confidence 4445 66677777777762 24444445566666
No 160
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.68 E-value=5.5e-16 Score=180.84 Aligned_cols=225 Identities=21% Similarity=0.260 Sum_probs=175.8
Q ss_pred ccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCC
Q psy14500 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 508 (938)
Q Consensus 429 viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 508 (938)
++|.+.+...+...+..... ...++++.|++||||+++|++++....+...+|+.+||..+......+.+||+
T Consensus 136 lig~s~~~~~v~~~i~~~a~-------~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~ 208 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRLSR-------SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGH 208 (463)
T ss_pred eeecCHHHHHHHHHHHHHhC-------cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCC
Confidence 56777777777766654321 11369999999999999999999998878899999999998776666788897
Q ss_pred CCC-CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhh
Q psy14500 509 PPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 587 (938)
Q Consensus 509 ~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 587 (938)
..+ +.|.... ..+.+..+.+++||||||+.+++.+|..|+++|++|.+...++......++.+|+||+.....+.+
T Consensus 209 ~~~~~~~~~~~--~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~- 285 (463)
T TIGR01818 209 EKGAFTGANTR--RQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR- 285 (463)
T ss_pred CCCCCCCcccC--CCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH-
Confidence 655 3332211 123455667899999999999999999999999999988766655556678899999987654432
Q ss_pred hcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCC--HHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhh
Q psy14500 588 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN--RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 664 (938)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~--~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 664 (938)
.+.|+++|++|+.. .|.+|||. .+|+..++..++.++........ ..+++++++.|..
T Consensus 286 ----------------~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~--~~~~~~a~~~L~~- 346 (463)
T TIGR01818 286 ----------------QGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEP--KLLDPEALERLKQ- 346 (463)
T ss_pred ----------------cCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCC--CCcCHHHHHHHHh-
Confidence 45789999999975 89999998 68999999999988765443221 3699999999988
Q ss_pred cccccccccccccchHHHHHHH
Q psy14500 665 GFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 665 ~~~~~~~~~dl~~~~~~l~~~l 686 (938)
|+|+.+++.|.++ +++++
T Consensus 347 -~~wpgNvreL~~~---~~~~~ 364 (463)
T TIGR01818 347 -LRWPGNVRQLENL---CRWLT 364 (463)
T ss_pred -CCCCChHHHHHHH---HHHHH
Confidence 7889999999998 77766
No 161
>PRK15115 response regulator GlrR; Provisional
Probab=99.67 E-value=6.3e-16 Score=179.23 Aligned_cols=226 Identities=16% Similarity=0.170 Sum_probs=171.0
Q ss_pred cccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcC
Q psy14500 428 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 507 (938)
Q Consensus 428 ~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 507 (938)
.++|.+..+..+...+...... ..+++++|++||||+++|+++++...+.+.+|+.++|..+........+||
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~-------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS-------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC-------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 3556666666655555433211 136999999999999999999999877788999999999877666678888
Q ss_pred CCCCCc-cccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhh
Q psy14500 508 APPGYI-GYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 586 (938)
Q Consensus 508 ~~~~~~-g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 586 (938)
+..+.. |... ...+.+..+.+++||||||+.+++..|..|+.+|+++.+...++......++.+|+||+.+......
T Consensus 208 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~ 285 (444)
T PRK15115 208 HARGAFTGAVS--NREGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMA 285 (444)
T ss_pred CCcCCCCCCcc--CCCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHH
Confidence 866532 2211 1123455667899999999999999999999999999887655544445688999999975443322
Q ss_pred hhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHh
Q psy14500 587 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 663 (938)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~ 663 (938)
.+.|++++++|++. .|.+|||.+ +|+..++..++.++....... ...+++++++.|..
T Consensus 286 -----------------~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~ 346 (444)
T PRK15115 286 -----------------RGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPF--VRAFSTDAMKRLMT 346 (444)
T ss_pred -----------------cCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCC--CCCcCHHHHHHHHh
Confidence 45799999999975 788888876 789999888888876543322 13599999999988
Q ss_pred hcccccccccccccchHHHHHHH
Q psy14500 664 IGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 664 ~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
|+|+.+++.+.++ +++++
T Consensus 347 --~~WpgNvreL~~~---i~~~~ 364 (444)
T PRK15115 347 --ASWPGNVRQLVNV---IEQCV 364 (444)
T ss_pred --CCCCChHHHHHHH---HHHHH
Confidence 8889999999998 77766
No 162
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.67 E-value=1.4e-15 Score=153.29 Aligned_cols=181 Identities=15% Similarity=0.269 Sum_probs=136.2
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 505 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 505 (938)
.+.++||+++++.+.-.++.++.. ...+-++||+||||.|||+||..||+.+ +.++.......+..+.+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~r----~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK~gD---- 93 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKKR----GEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEKPGD---- 93 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHhc----CCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccChhh----
Confidence 356789999999999999877632 3344589999999999999999999999 55555555444433222
Q ss_pred cCCCCCCccccccchhHHHH-HhCCCEEEEEccccccCHHHHHHHHHhhcCCceec--CC-----CceeecCCeEEEEec
Q psy14500 506 IGAPPGYIGYEEGGYLTEIV-RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD--NR-----GRTINFRNTIIVMTS 577 (938)
Q Consensus 506 ~g~~~~~~g~~~~~~l~~~~-~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~--~~-----g~~~~~~~~iiI~tt 577 (938)
+...+ .-.++.|||||||+++++.+-+.|+..||+..+.. +. ...++.....+|-+|
T Consensus 94 ---------------laaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 94 ---------------LAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred ---------------HHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 22222 34566899999999999999999999999877642 22 234566777777666
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHH
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 657 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 657 (938)
.. .+.++.+|.+||..+..+.-++.+++.+|+.+....+ .+++++++
T Consensus 159 Tr------------------------~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l---------~i~i~~~~ 205 (332)
T COG2255 159 TR------------------------AGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL---------GIEIDEEA 205 (332)
T ss_pred cc------------------------cccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh---------CCCCChHH
Confidence 64 2347789999999999999999999999977654332 27888999
Q ss_pred HHHHHhhc
Q psy14500 658 LKKISNIG 665 (938)
Q Consensus 658 ~~~L~~~~ 665 (938)
...++..+
T Consensus 206 a~eIA~rS 213 (332)
T COG2255 206 ALEIARRS 213 (332)
T ss_pred HHHHHHhc
Confidence 99998854
No 163
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=2.6e-16 Score=179.03 Aligned_cols=185 Identities=18% Similarity=0.278 Sum_probs=127.7
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC---c-e---EEeccc---c
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE---S-I---IRIDMS---E 495 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~---~-~---~~~~~~---~ 495 (938)
.++|+||+++++.|.+++...+.. +.+||+||+|||||++|+.+|+.++..+. . . -+..|. .
T Consensus 15 FddVIGQe~vv~~L~~al~~gRLp--------HA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~ 86 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRLH--------HAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTE 86 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCCc--------eEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHH
Confidence 467899999999999999866532 46799999999999999999999964210 0 0 011111 1
Q ss_pred ccchhhhhhhcC-CCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 496 FIEKHSISRLIG-APPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 496 ~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
+.... ...++. ......|.++.+.+.+.+. ...+.|+||||+|.|+...+|.||+.||+ +..+
T Consensus 87 I~aG~-hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE-----------PP~~ 154 (700)
T PRK12323 87 IDAGR-FVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPEH 154 (700)
T ss_pred HHcCC-CCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc-----------CCCC
Confidence 11100 000110 0011233333444444443 33468999999999999999999999997 5677
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
++||++||... .+.+.+++|| ..+.|.+++.+++.+.+...+. ..+
T Consensus 155 v~FILaTtep~------------------------kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~-------~Eg-- 200 (700)
T PRK12323 155 VKFILATTDPQ------------------------KIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILG-------EEG-- 200 (700)
T ss_pred ceEEEEeCChH------------------------hhhhHHHHHH-HhcccCCCChHHHHHHHHHHHH-------HcC--
Confidence 88999888533 3678999999 6999999999999888665553 234
Q ss_pred EEEcHHHHHHHHhh
Q psy14500 651 LKISKAALKKISNI 664 (938)
Q Consensus 651 l~~~~~~~~~L~~~ 664 (938)
+.+++++++.|+..
T Consensus 201 i~~d~eAL~~IA~~ 214 (700)
T PRK12323 201 IAHEVNALRLLAQA 214 (700)
T ss_pred CCCCHHHHHHHHHH
Confidence 56788888888773
No 164
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=4.4e-16 Score=182.72 Aligned_cols=186 Identities=19% Similarity=0.264 Sum_probs=126.8
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC-c-eEEecccc---ccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-S-IIRIDMSE---FIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~-~-~~~~~~~~---~~~~~ 500 (938)
.+.|+||+++++.|.+++...+. .+.+||+||||||||++|+++|+.++.... . ..+..|.. +....
T Consensus 15 FddIIGQe~Iv~~LknaI~~~rl--------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~ 86 (944)
T PRK14949 15 FEQMVGQSHVLHALTNALTQQRL--------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGR 86 (944)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC--------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCC
Confidence 35689999999999999876543 235699999999999999999999964311 0 01111111 11100
Q ss_pred hhhhhcCCCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEe
Q psy14500 501 SISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 576 (938)
Q Consensus 501 ~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 576 (938)
...-+.-......|.+..+.+...+. .+.+.|+||||+++|+...+|.||+.||+ +..+++||++
T Consensus 87 ~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-----------PP~~vrFILa 155 (944)
T PRK14949 87 FVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-----------PPEHVKFLLA 155 (944)
T ss_pred CceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------cCCCeEEEEE
Confidence 00000000011223333344444333 34568999999999999999999999997 5667788888
Q ss_pred cCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHH
Q psy14500 577 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 656 (938)
Q Consensus 577 tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 656 (938)
|+... .+.+.+++|| .++.|.+++.+++.+.+...+.. .+ +.++++
T Consensus 156 TTe~~------------------------kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~-------Eg--I~~ede 201 (944)
T PRK14949 156 TTDPQ------------------------KLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQ-------EQ--LPFEAE 201 (944)
T ss_pred CCCch------------------------hchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHH-------cC--CCCCHH
Confidence 77533 3567899999 69999999999999987665543 23 678899
Q ss_pred HHHHHHhh
Q psy14500 657 ALKKISNI 664 (938)
Q Consensus 657 ~~~~L~~~ 664 (938)
+++.|+..
T Consensus 202 AL~lIA~~ 209 (944)
T PRK14949 202 ALTLLAKA 209 (944)
T ss_pred HHHHHHHH
Confidence 99998874
No 165
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=8.5e-16 Score=181.42 Aligned_cols=202 Identities=19% Similarity=0.212 Sum_probs=150.3
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC------------
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL------------ 86 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~------------ 86 (938)
.|.++|||++|+++|||++.++.|...+..+..+| +||+||+|+|||++|+++|+.+.+........
T Consensus 5 ~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~ 84 (585)
T PRK14950 5 VLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIA 84 (585)
T ss_pred HHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHh
Confidence 47899999999999999999999999888776666 58999999999999999999985422100000
Q ss_pred ---CCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--
Q psy14500 87 ---SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 158 (938)
Q Consensus 87 ---~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 158 (938)
...++.++... ..+ ...++.+...+.. .....|+||||+|.|. .+..+.|+..++.
T Consensus 85 ~~~~~d~~~i~~~~------~~~--vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~--------~~a~naLLk~LEepp 148 (585)
T PRK14950 85 EGSAVDVIEMDAAS------HTS--VDDAREIIERVQFRPALARYKVYIIDEVHMLS--------TAAFNALLKTLEEPP 148 (585)
T ss_pred cCCCCeEEEEeccc------cCC--HHHHHHHHHHHhhCcccCCeEEEEEeChHhCC--------HHHHHHHHHHHhcCC
Confidence 11233333211 111 1234555544431 2335699999999983 3567788888876
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
..+++|++++... .+.+.+.+||..+.|..++..+...+++.++.+ .++.++++++..++..+++..
T Consensus 149 ~~tv~Il~t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~----egl~i~~eal~~La~~s~Gdl---- 215 (585)
T PRK14950 149 PHAIFILATTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAAA----EGINLEPGALEAIARAATGSM---- 215 (585)
T ss_pred CCeEEEEEeCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 4677777777665 677899999999999999999999888877764 578899999999999998877
Q ss_pred CchhhhhHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAA 252 (938)
Q Consensus 239 ~p~~a~~ll~~a~~ 252 (938)
+.+...++..+.
T Consensus 216 --r~al~~LekL~~ 227 (585)
T PRK14950 216 --RDAENLLQQLAT 227 (585)
T ss_pred --HHHHHHHHHHHH
Confidence 888888887654
No 166
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.66 E-value=2.1e-16 Score=177.11 Aligned_cols=219 Identities=16% Similarity=0.217 Sum_probs=172.1
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCC
Q psy14500 430 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAP 509 (938)
Q Consensus 430 iGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 509 (938)
++.+..++.+.+.+++.... ..++++.|.|||||-.+|+++++..- ...||+.+||..+......+++||..
T Consensus 316 ~~~d~s~a~l~rk~~rv~~~-------~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~ 387 (606)
T COG3284 316 PLLDPSRATLLRKAERVAAT-------DLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYV 387 (606)
T ss_pred cccCHHHHHHHHHHHHHhhc-------CCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccC
Confidence 45666666666666554421 23799999999999999999999886 77899999999999999999999987
Q ss_pred CCC-ccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhh
Q psy14500 510 PGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 588 (938)
Q Consensus 510 ~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~ 588 (938)
+|. .|.... .-...+..+..+.+|+|||..|+-..|..||++|++|.+++.+|.. ..-++.+|.||+.+...+.+
T Consensus 388 ~GafTga~~k-G~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~-- 463 (606)
T COG3284 388 AGAFTGARRK-GYKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVE-- 463 (606)
T ss_pred ccccccchhc-cccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHH--
Confidence 763 332222 2235567788999999999999999999999999999999998887 66788999999998877665
Q ss_pred cchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH-HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcc
Q psy14500 589 KGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR-KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGF 666 (938)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~-e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~ 666 (938)
.+.|+.+|++|+.. +|.+||+.+ .+....+.+.+.+.. .-.+.++++++..|.. |
T Consensus 464 ---------------~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~------~~~~~l~~~~~~~l~~--~ 520 (606)
T COG3284 464 ---------------QGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREN------DWRLQLDDDALARLLA--Y 520 (606)
T ss_pred ---------------cCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHcc------CCCccCCHHHHHHHHh--C
Confidence 56899999999976 788888865 444455444443322 2348899999999977 8
Q ss_pred cccccccccccchHHHHHHH
Q psy14500 667 DLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 667 ~~~~~~~dl~~~~~~l~~~l 686 (938)
.|+.++|.+.+. |+.+.
T Consensus 521 ~WPGNirel~~v---~~~~~ 537 (606)
T COG3284 521 RWPGNIRELDNV---IERLA 537 (606)
T ss_pred CCCCcHHHHHHH---HHHHH
Confidence 899999998888 55554
No 167
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.65 E-value=2.7e-15 Score=178.64 Aligned_cols=202 Identities=19% Similarity=0.291 Sum_probs=149.6
Q ss_pred hcCCCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
...+|+++.|.+...+++..++. ...+.++||+||||||||++++++++++ +.+++.+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~i 216 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTI 216 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEE
Confidence 34577888888877666655442 1335679999999999999999999988 7788888
Q ss_pred ehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC--C-cc---chhhhhhhhcc----CCceEE
Q psy14500 94 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE--G-SI---DAGNMLKPELS----RGELHC 163 (938)
Q Consensus 94 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~--~-~~---~~~~~L~~~l~----~~~i~v 163 (938)
+.+.+. ..+.|.....++.+|..+.. ..|+||||||+|.+...+... + .. ...+.|+..++ ...+++
T Consensus 217 s~~~~~--~~~~g~~~~~~~~~f~~a~~-~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv 293 (644)
T PRK10733 217 SGSDFV--EMFVGVGASRVRDMFEQAKK-AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 (644)
T ss_pred ehHHhH--HhhhcccHHHHHHHHHHHHh-cCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE
Confidence 887766 34667777789999998874 458999999999998765431 1 11 13344444443 457899
Q ss_pred EEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCc
Q psy14500 164 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 240 (938)
Q Consensus 164 I~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 240 (938)
|+|||+++ .+|++++| ||+. |.|+.|+.++|.+||+.+..+.....++ .+..++..+.+| .+
T Consensus 294 IaaTN~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~-----d~~~la~~t~G~-----sg 358 (644)
T PRK10733 294 IAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI-----DAAIIARGTPGF-----SG 358 (644)
T ss_pred EEecCChh-----hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcC-----CHHHHHhhCCCC-----CH
Confidence 99999999 89999998 9986 9999999999999999888764332222 233455555444 46
Q ss_pred hhhhhHHHHHHHHHH
Q psy14500 241 DKAIDLIDEAAAKIK 255 (938)
Q Consensus 241 ~~a~~ll~~a~~~~~ 255 (938)
++...++.+|+..+.
T Consensus 359 adl~~l~~eAa~~a~ 373 (644)
T PRK10733 359 ADLANLVNEAALFAA 373 (644)
T ss_pred HHHHHHHHHHHHHHH
Confidence 777888888876554
No 168
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.64 E-value=1.3e-15 Score=185.73 Aligned_cols=198 Identities=18% Similarity=0.226 Sum_probs=138.2
Q ss_pred CccccHHHHHHHHHHHhc------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-----
Q psy14500 32 PVIGRDDEIRRAIQVLQR------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA----- 100 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~----- 100 (938)
+++|++++.+++..++.. ...+++||+||||||||++|+++|+.+ +.+++.++++....
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~~~i~ 390 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDEAEIR 390 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccHHHHc
Confidence 588999999998886642 234579999999999999999999998 66777776543211
Q ss_pred --CccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC-----------------Cce
Q psy14500 101 --GTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-----------------GEL 161 (938)
Q Consensus 101 --~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-----------------~~i 161 (938)
...|.|.....+...+..+.... | |+||||+|.+.+... .+..+.|++.++. +++
T Consensus 391 g~~~~~~g~~~g~i~~~l~~~~~~~-~-villDEidk~~~~~~----~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v 464 (775)
T TIGR00763 391 GHRRTYVGAMPGRIIQGLKKAKTKN-P-LFLLDEIDKIGSSFR----GDPASALLEVLDPEQNNAFSDHYLDVPFDLSKV 464 (775)
T ss_pred CCCCceeCCCCchHHHHHHHhCcCC-C-EEEEechhhcCCccC----CCHHHHHHHhcCHHhcCccccccCCceeccCCE
Confidence 12355555555666666665333 3 899999999976321 1234455555531 468
Q ss_pred EEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhh-hhcc-----cCCCCCHHHHHHHHHhhhhccc
Q psy14500 162 HCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKK-YEVH-----HGVEITDPAIVAASELSYRYIS 235 (938)
Q Consensus 162 ~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~-~~~~-----~~~~i~~~~l~~~~~~s~~~~~ 235 (938)
++|+|||..+ .++++|++||..|+|+.|+.+++..|++.++.. .... .++.++++++..++....+..+
T Consensus 465 ~~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g 539 (775)
T TIGR00763 465 IFIATANSID-----TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAG 539 (775)
T ss_pred EEEEecCCch-----hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcC
Confidence 8999999987 899999999999999999999999999765532 1111 2467999999999885544443
Q ss_pred cCCCchhhhhHHHHH
Q psy14500 236 DRFMPDKAIDLIDEA 250 (938)
Q Consensus 236 ~~~~p~~a~~ll~~a 250 (938)
-|.+-+....++..+
T Consensus 540 ~R~l~r~i~~~~~~~ 554 (775)
T TIGR00763 540 VRNLERQIEKICRKA 554 (775)
T ss_pred ChHHHHHHHHHHHHH
Confidence 444444444444333
No 169
>KOG2004|consensus
Probab=99.64 E-value=1.5e-15 Score=169.54 Aligned_cols=202 Identities=20% Similarity=0.282 Sum_probs=150.0
Q ss_pred CCccccHHHHHHHHHHHhcCC------CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc--
Q psy14500 31 DPVIGRDDEIRRAIQVLQRRS------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT-- 102 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~~~~------~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~-- 102 (938)
++-.|.+++.++++++++-.. .+-++|+||||+|||+++++||+.+ +..++.++.+.+..-+
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeI 480 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEI 480 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhh
Confidence 377899999999999887322 2236899999999999999999999 8899999887654221
Q ss_pred -----cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc-----------------CCc
Q psy14500 103 -----KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-----------------RGE 160 (938)
Q Consensus 103 -----~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~-----------------~~~ 160 (938)
.|+|.+..++-..+....-.+ | +++|||+|.+.... . .+-+.+|+++|. -.+
T Consensus 481 kGHRRTYVGAMPGkiIq~LK~v~t~N-P-liLiDEvDKlG~g~--q--GDPasALLElLDPEQNanFlDHYLdVp~DLSk 554 (906)
T KOG2004|consen 481 KGHRRTYVGAMPGKIIQCLKKVKTEN-P-LILIDEVDKLGSGH--Q--GDPASALLELLDPEQNANFLDHYLDVPVDLSK 554 (906)
T ss_pred cccceeeeccCChHHHHHHHhhCCCC-c-eEEeehhhhhCCCC--C--CChHHHHHHhcChhhccchhhhccccccchhh
Confidence 356777666666666665434 4 78999999996322 2 234456666662 136
Q ss_pred eEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhh-hhcccC-----CCCCHHHHHHHHHhhhhcc
Q psy14500 161 LHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKK-YEVHHG-----VEITDPAIVAASELSYRYI 234 (938)
Q Consensus 161 i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~-~~~~~~-----~~i~~~~l~~~~~~s~~~~ 234 (938)
|.||+|.|..+ .++++|++|+..|+++-+..++...|.+.++-. ....+| +++++.++..+++...+..
T Consensus 555 VLFicTAN~id-----tIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEa 629 (906)
T KOG2004|consen 555 VLFICTANVID-----TIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREA 629 (906)
T ss_pred eEEEEeccccc-----cCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHH
Confidence 89999999998 899999999999999999999999999766543 333444 6799999998888777766
Q ss_pred ccCCCchhhhhHHHHHHHH
Q psy14500 235 SDRFMPDKAIDLIDEAAAK 253 (938)
Q Consensus 235 ~~~~~p~~a~~ll~~a~~~ 253 (938)
+-|.+......+++.++-.
T Consensus 630 GVRnLqk~iekI~Rk~Al~ 648 (906)
T KOG2004|consen 630 GVRNLQKQIEKICRKVALK 648 (906)
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6666666555555555433
No 170
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=2.3e-15 Score=171.88 Aligned_cols=200 Identities=19% Similarity=0.254 Sum_probs=132.1
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEecc---ccccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDM---SEFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~---~~~~~~~ 500 (938)
.+.++||+++++.+.+++...+. .+.+||+||+|||||++|+++|+.++..... -.+..| ..+....
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl--------~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRL--------HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGR 85 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCC
Confidence 35789999999999999985542 2478999999999999999999998542110 000111 1111000
Q ss_pred h--hhhhcCCCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 501 S--ISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 501 ~--~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
. +..+-+ .+..+.+..+.+...+. .+.+.|+||||+|.++...++.|++.||+ +...+.||
T Consensus 86 hpDviEIDA--As~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-----------PP~~v~FI 152 (702)
T PRK14960 86 FIDLIEIDA--ASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-----------PPEHVKFL 152 (702)
T ss_pred CCceEEecc--cccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------CCCCcEEE
Confidence 0 000000 01122222233333332 23468999999999999999999999997 44667788
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
++|+... .+.+.+++|| .++.|.+++.+++.+.+...+. ..+ +.++
T Consensus 153 LaTtd~~------------------------kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~-------kEg--I~id 198 (702)
T PRK14960 153 FATTDPQ------------------------KLPITVISRC-LQFTLRPLAVDEITKHLGAILE-------KEQ--IAAD 198 (702)
T ss_pred EEECChH------------------------hhhHHHHHhh-heeeccCCCHHHHHHHHHHHHH-------HcC--CCCC
Confidence 8887522 2457889999 5999999999999888655543 345 7799
Q ss_pred HHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 655 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 655 ~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
++++..|+..+ -||+...+..+.+++
T Consensus 199 ~eAL~~IA~~S------~GdLRdALnLLDQaI 224 (702)
T PRK14960 199 QDAIWQIAESA------QGSLRDALSLTDQAI 224 (702)
T ss_pred HHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 99999998843 345555544455444
No 171
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=1.4e-15 Score=171.88 Aligned_cols=202 Identities=16% Similarity=0.195 Sum_probs=134.5
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceE--Ee---ccccccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESII--RI---DMSEFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~--~~---~~~~~~~~~ 500 (938)
.++++||+.+++.+.+++...+. .+++||+||+|+|||++|+.+|+.++....+-. +. +|..+....
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri--------~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~ 83 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKI--------PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSN 83 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccC
Confidence 45789999999999998875542 247999999999999999999998843221110 00 111111110
Q ss_pred hhhhhcCCCCCCccccccchhHHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEe
Q psy14500 501 SISRLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 576 (938)
Q Consensus 501 ~~~~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 576 (938)
...-+.-...+..|.+..+.+.+.+... .+.|+||||++.++...+|.|++.||+ +...++||++
T Consensus 84 ~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-----------Pp~~v~fIla 152 (491)
T PRK14964 84 HPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE-----------PAPHVKFILA 152 (491)
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC-----------CCCCeEEEEE
Confidence 0000000111233444444444444433 367999999999999999999999997 5567888888
Q ss_pred cCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHH
Q psy14500 577 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 656 (938)
Q Consensus 577 tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 656 (938)
|+.. .++.+.+.+|| ..+.|.+++.+++.+.+...+. ..+ +.++++
T Consensus 153 tte~------------------------~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~-------~Eg--i~i~~e 198 (491)
T PRK14964 153 TTEV------------------------KKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAK-------KEN--IEHDEE 198 (491)
T ss_pred eCCh------------------------HHHHHHHHHhh-eeeecccccHHHHHHHHHHHHH-------HcC--CCCCHH
Confidence 8642 23567899999 5899999999999888555443 345 678999
Q ss_pred HHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 657 ALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 657 ~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+++.|++.+ -|++......+++++
T Consensus 199 AL~lIa~~s------~GslR~alslLdqli 222 (491)
T PRK14964 199 SLKLIAENS------SGSMRNALFLLEQAA 222 (491)
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 999998843 234444444455554
No 172
>KOG0734|consensus
Probab=99.64 E-value=1.5e-15 Score=163.88 Aligned_cols=163 Identities=21% Similarity=0.300 Sum_probs=123.5
Q ss_pred hhccccChHHHHHHHHHHHHhhh-------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 425 LCKRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 425 l~~~viGq~~~~~~l~~~l~~~~-------~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
-+++|.|.++|+..+.+.+...+ .|-+-|+ .+||+||||||||.|||++|.+. +.||+....++|-
T Consensus 302 ~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPK----GVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFd 374 (752)
T KOG0734|consen 302 TFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPK----GVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFD 374 (752)
T ss_pred ccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCC----ceEEeCCCCCchhHHHHHhhccc---CCCeEeccccchh
Confidence 36788999999988888775443 2322333 59999999999999999999877 8999999888876
Q ss_pred chhhhhhhcCCCCCCcccc--ccchhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCc
Q psy14500 498 EKHSISRLIGAPPGYIGYE--EGGYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGR 564 (938)
Q Consensus 498 ~~~~~~~l~g~~~~~~g~~--~~~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~ 564 (938)
.. |+|.. ..+.++...+...+|||||||||... ...+|.||-.||...
T Consensus 375 Em------------~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~------- 435 (752)
T KOG0734|consen 375 EM------------FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFK------- 435 (752)
T ss_pred hh------------hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcC-------
Confidence 43 55543 33667777788888999999999764 245688888887421
Q ss_pred eeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 565 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 565 ~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
....+|+|.+||.+.. ++++|. +|||..|..+.++-.-..+|+..++.+
T Consensus 436 --qNeGiIvigATNfpe~------------------------LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~k 486 (752)
T KOG0734|consen 436 --QNEGIIVIGATNFPEA------------------------LDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSK 486 (752)
T ss_pred --cCCceEEEeccCChhh------------------------hhHHhcCCCccceeEecCCCCcccHHHHHHHHHhc
Confidence 2356788899997543 333443 799999999999999999998877765
No 173
>KOG0651|consensus
Probab=99.64 E-value=6.9e-16 Score=156.68 Aligned_cols=165 Identities=24% Similarity=0.325 Sum_probs=135.9
Q ss_pred cCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 27 LGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 27 ~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
.-+|+.+-|-...++.+...+. -..|..++||||||+|||.+|+++|..+ ++.++.+
T Consensus 128 ~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v 197 (388)
T KOG0651|consen 128 NISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKV 197 (388)
T ss_pred ccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEe
Confidence 3388888888888888877553 2455678999999999999999999998 8999999
Q ss_pred ehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cchhhhhhhhcc-------CCceEE
Q psy14500 94 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPELS-------RGELHC 163 (938)
Q Consensus 94 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l~-------~~~i~v 163 (938)
..+.+. .+|.|+....++..|..|+... |||+|+||+|...+.+.+.++ +.++.+|-.++. -+.+.+
T Consensus 198 ~ss~lv--~kyiGEsaRlIRemf~yA~~~~-pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ 274 (388)
T KOG0651|consen 198 VSSALV--DKYIGESARLIRDMFRYAREVI-PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKT 274 (388)
T ss_pred eHhhhh--hhhcccHHHHHHHHHHHHhhhC-ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccE
Confidence 999998 6789999999999999998654 899999999999876654443 345556655552 468999
Q ss_pred EEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhh
Q psy14500 164 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKK 209 (938)
Q Consensus 164 I~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~ 209 (938)
|.|||.++ .++|+|+| |++. +++|.|....|..|++-....
T Consensus 275 ImatNrpd-----tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~ 318 (388)
T KOG0651|consen 275 IMATNRPD-----TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQP 318 (388)
T ss_pred EEecCCcc-----ccchhhcCCccccceeccCCcchhhceeeEeecccc
Confidence 99999999 89999999 9986 999999999999988755443
No 174
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.64 E-value=2.5e-15 Score=172.93 Aligned_cols=185 Identities=20% Similarity=0.286 Sum_probs=126.1
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce--EEeccc---cccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDMS---EFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~~---~~~~~~ 500 (938)
.+.++||+++++.+.+++...+. .+.+||+||+|||||++|+++|+.++.....- .+..|. .+....
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~ 86 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYL--------HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGR 86 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCC--------CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence 45689999999999999976542 23689999999999999999999996432110 011111 110000
Q ss_pred --hhhhhcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 501 --SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 501 --~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
++..+- ..+..|.+..+.+.+.+.. +.+.|+||||+|.+++..+|+|++.||+ +..+++||
T Consensus 87 ~~d~~eid--aas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-----------pp~~~~fI 153 (509)
T PRK14958 87 FPDLFEVD--AASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-----------PPSHVKFI 153 (509)
T ss_pred CceEEEEc--ccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-----------cCCCeEEE
Confidence 000010 0112333333334343332 3468999999999999999999999997 56678888
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
++|+... .+.+.+.+|| ..+.|.+++.+++.+.+...+. ..+ +.++
T Consensus 154 lattd~~------------------------kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~-------~eg--i~~~ 199 (509)
T PRK14958 154 LATTDHH------------------------KLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLK-------EEN--VEFE 199 (509)
T ss_pred EEECChH------------------------hchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHH-------HcC--CCCC
Confidence 8886422 3556799999 5899999999998888555443 345 6678
Q ss_pred HHHHHHHHhhc
Q psy14500 655 KAALKKISNIG 665 (938)
Q Consensus 655 ~~~~~~L~~~~ 665 (938)
+++++.|+..+
T Consensus 200 ~~al~~ia~~s 210 (509)
T PRK14958 200 NAALDLLARAA 210 (509)
T ss_pred HHHHHHHHHHc
Confidence 99999998743
No 175
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.63 E-value=4.6e-15 Score=172.57 Aligned_cols=184 Identities=19% Similarity=0.285 Sum_probs=126.2
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC--ceEEeccc---cccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMS---EFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~---~~~~~~ 500 (938)
.+.|+||+++++.+.+.+...+. .+.+||+||+|||||++|+++|+.++.... ..-+..|. .+....
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl--------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRL--------HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGR 86 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCC
Confidence 46789999999999999986542 235799999999999999999999954211 00011111 110000
Q ss_pred --hhhhhcCCCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 501 --SISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 501 --~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
++..+ . ..+..+.+..+.+...+. .+.+.|+||||+|+|+...+|.||+.||+ +..+++||
T Consensus 87 ~~D~iei-d-aas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-----------Pp~~v~FI 153 (647)
T PRK07994 87 FVDLIEI-D-AASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFL 153 (647)
T ss_pred CCCceee-c-ccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-----------CCCCeEEE
Confidence 00000 0 011123333344444332 24568999999999999999999999997 66778888
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
++|+... .+.+.+++|| ..+.|.+++.+++...+...+.. .+ +.++
T Consensus 154 L~Tt~~~------------------------kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~-------e~--i~~e 199 (647)
T PRK07994 154 LATTDPQ------------------------KLPVTILSRC-LQFHLKALDVEQIRQQLEHILQA-------EQ--IPFE 199 (647)
T ss_pred EecCCcc------------------------ccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHH-------cC--CCCC
Confidence 8887533 3667899999 69999999999999886655532 34 6678
Q ss_pred HHHHHHHHhh
Q psy14500 655 KAALKKISNI 664 (938)
Q Consensus 655 ~~~~~~L~~~ 664 (938)
++++..|+..
T Consensus 200 ~~aL~~Ia~~ 209 (647)
T PRK07994 200 PRALQLLARA 209 (647)
T ss_pred HHHHHHHHHH
Confidence 8888888873
No 176
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.63 E-value=3.6e-15 Score=173.55 Aligned_cols=206 Identities=23% Similarity=0.316 Sum_probs=140.2
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhc-------cCCCceEEeccccc--c
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIF-------NNEESIIRIDMSEF--I 497 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~-------~~~~~~~~~~~~~~--~ 497 (938)
+.++||+.+++.+..++... .+ .++||+||||||||++|+++++.+. ..+.+|+.+||+.. .
T Consensus 65 ~~iiGqs~~i~~l~~al~~~--------~~-~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~ 135 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP--------NP-QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFD 135 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC--------CC-ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCC
Confidence 45899999999988664311 11 3799999999999999999997642 22468999998742 2
Q ss_pred chhhhhhhcCCC--CCCccccc------cchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC------C
Q psy14500 498 EKHSISRLIGAP--PGYIGYEE------GGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR------G 563 (938)
Q Consensus 498 ~~~~~~~l~g~~--~~~~g~~~------~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~------g 563 (938)
.......++|+. +.|.|... .....+.+..+.+++||||||+.+++..|+.|+++|+++.+.... +
T Consensus 136 ~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 136 ERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred ccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccC
Confidence 211122344431 11222110 011233566778899999999999999999999999987754221 1
Q ss_pred c-----------eeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHH
Q psy14500 564 R-----------TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSI 632 (938)
Q Consensus 564 ~-----------~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i 632 (938)
. .....++++|++|+.... .+.|++.+|| ..+.|+|++.+++.+|
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~-----------------------~L~paLrsR~-~~I~f~pL~~eei~~I 271 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNPE-----------------------EIPPALRSRC-VEIFFRPLLDEEIKEI 271 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCcc-----------------------cCChHHhhhh-heeeCCCCCHHHHHHH
Confidence 0 011345667777665443 2678999999 4889999999999999
Q ss_pred HHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccc
Q psy14500 633 ANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 633 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
++..+.+ .+ +.+++++++.|.. |.| +.|++.+.
T Consensus 272 l~~~a~k-------~~--i~is~~al~~I~~--y~~--n~Rel~nl 304 (531)
T TIGR02902 272 AKNAAEK-------IG--INLEKHALELIVK--YAS--NGREAVNI 304 (531)
T ss_pred HHHHHHH-------cC--CCcCHHHHHHHHH--hhh--hHHHHHHH
Confidence 7775543 23 6789999999887 444 34666655
No 177
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=5e-15 Score=171.61 Aligned_cols=202 Identities=19% Similarity=0.253 Sum_probs=133.9
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce--EEecc---ccccch-
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDM---SEFIEK- 499 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~---~~~~~~- 499 (938)
.+.|+||+++++.|.+++...+. .+.+||+||+|||||++|+++|+.++....+- -+..| ..+...
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~ 83 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRI--------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNG 83 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhccc
Confidence 45788999999999999985442 23579999999999999999999986432110 11111 111100
Q ss_pred -hhhhhhcCCCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 500 -HSISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 500 -~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
.....+.-......|.+..+.+.+.+. .+.+.|+||||++.++...+|+||+.||+ +..+++||
T Consensus 84 ~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-----------pp~~~~fI 152 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-----------PPEHLIFI 152 (584)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-----------CCCCeEEE
Confidence 000000000111223344444444433 34578999999999999999999999997 56778888
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
++|+... .+.+.+.+|| ..+.|.+++.+++.+.+...+ ...+ +.++
T Consensus 153 L~tte~~------------------------kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~-------~~eg--i~i~ 198 (584)
T PRK14952 153 FATTEPE------------------------KVLPTIRSRT-HHYPFRLLPPRTMRALIARIC-------EQEG--VVVD 198 (584)
T ss_pred EEeCChH------------------------hhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHH-------HHcC--CCCC
Confidence 8886532 3567899999 599999999999888854443 3345 6688
Q ss_pred HHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 655 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 655 ~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
++++.+++..+ -|++......|++++
T Consensus 199 ~~al~~Ia~~s------~GdlR~aln~Ldql~ 224 (584)
T PRK14952 199 DAVYPLVIRAG------GGSPRDTLSVLDQLL 224 (584)
T ss_pred HHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 99999998743 244444433355544
No 178
>PLN03025 replication factor C subunit; Provisional
Probab=99.62 E-value=6.2e-15 Score=162.20 Aligned_cols=182 Identities=17% Similarity=0.238 Sum_probs=127.5
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC--ceEEeccccccchhhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSEFIEKHSISR 504 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~ 504 (938)
++++||++++..+...+.... .+++||+||||||||++|+++|+.+++.+. .++.++.++......+..
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~---------~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr~ 83 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN---------MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVRN 83 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHHH
Confidence 457899999998887765322 236999999999999999999999865432 244444433221111110
Q ss_pred hcCCCCCCccccccchhHHHHH------hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecC
Q psy14500 505 LIGAPPGYIGYEEGGYLTEIVR------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 578 (938)
Q Consensus 505 l~g~~~~~~g~~~~~~l~~~~~------~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 578 (938)
.+..... .....|++|||+|.++...|++|++.+|. ....+.||+++|
T Consensus 84 ---------------~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-----------~~~~t~~il~~n 137 (319)
T PLN03025 84 ---------------KIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEI-----------YSNTTRFALACN 137 (319)
T ss_pred ---------------HHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-----------ccCCceEEEEeC
Confidence 0111111 12467999999999999999999999985 234467888888
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHH
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 658 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 658 (938)
... .+.+++.+|| .++.|.+++.+++...+...+ +.++ +.++++++
T Consensus 138 ~~~------------------------~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~-------~~eg--i~i~~~~l 183 (319)
T PLN03025 138 TSS------------------------KIIEPIQSRC-AIVRFSRLSDQEILGRLMKVV-------EAEK--VPYVPEGL 183 (319)
T ss_pred Ccc------------------------ccchhHHHhh-hcccCCCCCHHHHHHHHHHHH-------HHcC--CCCCHHHH
Confidence 533 3567899999 599999999999988855433 4445 67889999
Q ss_pred HHHHhhcccccccccccccchHHHH
Q psy14500 659 KKISNIGFDLIYGARDVHGCKKSLS 683 (938)
Q Consensus 659 ~~L~~~~~~~~~~~~dl~~~~~~l~ 683 (938)
++|+..+ -||+......++
T Consensus 184 ~~i~~~~------~gDlR~aln~Lq 202 (319)
T PLN03025 184 EAIIFTA------DGDMRQALNNLQ 202 (319)
T ss_pred HHHHHHc------CCCHHHHHHHHH
Confidence 9998833 367777655555
No 179
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=5.7e-15 Score=168.19 Aligned_cols=200 Identities=21% Similarity=0.334 Sum_probs=130.5
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc----eEEe-ccccccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES----IIRI-DMSEFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~----~~~~-~~~~~~~~~ 500 (938)
.+.++||+++++.+...+...+. .+.+||+||||||||++|+++|+.++....+ +... .|.......
T Consensus 13 ~~divGq~~i~~~L~~~i~~~~l--------~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~ 84 (472)
T PRK14962 13 FSEVVGQDHVKKLIINALKKNSI--------SHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGT 84 (472)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCC
Confidence 35689999999999888875442 2368999999999999999999998542211 0000 000000000
Q ss_pred --hhhhhcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 501 --SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 501 --~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
.+..+ . .....|.+..+.+...+.. +...||||||++.++...++.|+..+++ +...+++|
T Consensus 85 ~~dv~el-~-aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-----------p~~~vv~I 151 (472)
T PRK14962 85 FMDVIEL-D-AASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-----------PPSHVVFV 151 (472)
T ss_pred CCccEEE-e-CcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-----------CCCcEEEE
Confidence 00001 0 0011222222333333332 3357999999999999999999999996 34567777
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
++|+... .+.+.+.+|| .++.|.|++.+++..++...+. ..+ +.++
T Consensus 152 lattn~~------------------------kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~-------~eg--i~i~ 197 (472)
T PRK14962 152 LATTNLE------------------------KVPPTIISRC-QVIEFRNISDELIIKRLQEVAE-------AEG--IEID 197 (472)
T ss_pred EEeCChH------------------------hhhHHHhcCc-EEEEECCccHHHHHHHHHHHHH-------HcC--CCCC
Confidence 7766311 3567899999 5999999999998888655443 334 6789
Q ss_pred HHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 655 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 655 ~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
++++++|+... -||+...+..++++.
T Consensus 198 ~eal~~Ia~~s------~GdlR~aln~Le~l~ 223 (472)
T PRK14962 198 REALSFIAKRA------SGGLRDALTMLEQVW 223 (472)
T ss_pred HHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 99999998833 356665655566654
No 180
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=7.2e-15 Score=168.67 Aligned_cols=201 Identities=19% Similarity=0.279 Sum_probs=133.2
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEeccc---cccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMS---EFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~---~~~~~~ 500 (938)
.+.++||+.+++.+..++...+. .+.+||+||+|||||++|+.+|+.++..... -.+..|. .+...
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl--------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~- 85 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKV--------HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNN- 85 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcC-
Confidence 45688999999999999975442 2358999999999999999999988532110 0011111 11000
Q ss_pred hhhhhcC-CCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEE
Q psy14500 501 SISRLIG-APPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 575 (938)
Q Consensus 501 ~~~~l~g-~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 575 (938)
....++. ......|.++.+.+...+. .+.+.|+||||+|+++...++.||+.||+ +...++||+
T Consensus 86 ~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-----------pp~~v~fIL 154 (546)
T PRK14957 86 SFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-----------PPEYVKFIL 154 (546)
T ss_pred CCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-----------CCCCceEEE
Confidence 0000000 0011233333334433333 24568999999999999999999999997 446677777
Q ss_pred ecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcH
Q psy14500 576 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 655 (938)
Q Consensus 576 ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 655 (938)
+|+.. ..+.+.+.+|| .++.|.+++.+++.+.+...+.. .+ +.+++
T Consensus 155 ~Ttd~------------------------~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~-------eg--i~~e~ 200 (546)
T PRK14957 155 ATTDY------------------------HKIPVTILSRC-IQLHLKHISQADIKDQLKIILAK-------EN--INSDE 200 (546)
T ss_pred EECCh------------------------hhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCH
Confidence 77641 23456799999 69999999999998886554433 35 67899
Q ss_pred HHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 656 AALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 656 ~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
++++.|+..+ -||+...+..+++++
T Consensus 201 ~Al~~Ia~~s------~GdlR~alnlLek~i 225 (546)
T PRK14957 201 QSLEYIAYHA------KGSLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 9999998843 355655555566655
No 181
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=7.3e-15 Score=176.64 Aligned_cols=200 Identities=18% Similarity=0.261 Sum_probs=134.0
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEeccccccc---h-
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSEFIE---K- 499 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~~~~---~- 499 (938)
++.||||+.+++.|.+++...+.. +.+||+||+|||||++|++||+.++....+ --+..|..... .
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri~--------Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~ 85 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRIN--------HAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGG 85 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCCC--------ceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCC
Confidence 457899999999999999865432 358999999999999999999999642211 01111211110 0
Q ss_pred ---hhhhhhcCCCCCCccccccchhHHHH----HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeE
Q psy14500 500 ---HSISRLIGAPPGYIGYEEGGYLTEIV----RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTI 572 (938)
Q Consensus 500 ---~~~~~l~g~~~~~~g~~~~~~l~~~~----~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~i 572 (938)
..+..+-+ ....|.+..+.+...+ ....+.|+||||+|+|+...+|.||++||+ ...+++
T Consensus 86 ~~~~dv~eida--as~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE-----------pP~~~~ 152 (824)
T PRK07764 86 PGSLDVTEIDA--ASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE-----------PPEHLK 152 (824)
T ss_pred CCCCcEEEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC-----------CCCCeE
Confidence 00000100 0112333334343332 235578999999999999999999999997 557788
Q ss_pred EEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEE
Q psy14500 573 IVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLK 652 (938)
Q Consensus 573 iI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~ 652 (938)
||++|+... ++.+.+.+|| .++.|.+++.+++.+++...+ +..+ +.
T Consensus 153 fIl~tt~~~------------------------kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il-------~~EG--v~ 198 (824)
T PRK07764 153 FIFATTEPD------------------------KVIGTIRSRT-HHYPFRLVPPEVMRGYLERIC-------AQEG--VP 198 (824)
T ss_pred EEEEeCChh------------------------hhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHH-------HHcC--CC
Confidence 888886422 2557899999 699999999999998855443 3445 66
Q ss_pred EcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 653 ISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 653 ~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
++++++.+|+... -||+...+..|++++
T Consensus 199 id~eal~lLa~~s------gGdlR~Al~eLEKLi 226 (824)
T PRK07764 199 VEPGVLPLVIRAG------GGSVRDSLSVLDQLL 226 (824)
T ss_pred CCHHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 8999999998844 244544444466655
No 182
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=5.2e-15 Score=171.90 Aligned_cols=201 Identities=17% Similarity=0.252 Sum_probs=132.1
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc----e------EEecccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES----I------IRIDMSE 495 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~----~------~~~~~~~ 495 (938)
.++++||+++++.|.+++...+. .+.+||+||+|||||++|+++|+.++..+.. . .+-.|..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl--------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~ 86 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRL--------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRD 86 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHH
Confidence 35688999999999999986553 2367999999999999999999999642110 0 0011111
Q ss_pred ccchhhhhhhcC-CCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 496 FIEKHSISRLIG-APPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 496 ~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
+...... .++- ...+..|.+..+.+.+.+.. ..+.|++|||+|.++...+|.||+.||+ ....
T Consensus 87 i~~g~h~-D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-----------PP~~ 154 (618)
T PRK14951 87 IDSGRFV-DYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-----------PPEY 154 (618)
T ss_pred HHcCCCC-ceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc-----------CCCC
Confidence 1110000 0000 00111233333334343333 3368999999999999999999999997 5567
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
++||++|+.... +.+.+++|| .++.|.+++.+++.+.+...+ ...|
T Consensus 155 ~~fIL~Ttd~~k------------------------il~TIlSRc-~~~~f~~Ls~eei~~~L~~i~-------~~eg-- 200 (618)
T PRK14951 155 LKFVLATTDPQK------------------------VPVTVLSRC-LQFNLRPMAPETVLEHLTQVL-------AAEN-- 200 (618)
T ss_pred eEEEEEECCchh------------------------hhHHHHHhc-eeeecCCCCHHHHHHHHHHHH-------HHcC--
Confidence 788888864332 456799999 699999999999988865544 3345
Q ss_pred EEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 651 LKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 651 l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+.++++++.+|+..+ -|++...+..+.+++
T Consensus 201 i~ie~~AL~~La~~s------~GslR~al~lLdq~i 230 (618)
T PRK14951 201 VPAEPQALRLLARAA------RGSMRDALSLTDQAI 230 (618)
T ss_pred CCCCHHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 678899999998833 345555433344433
No 183
>KOG0990|consensus
Probab=99.60 E-value=2.2e-14 Score=147.16 Aligned_cols=210 Identities=15% Similarity=0.148 Sum_probs=161.6
Q ss_pred HHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
-..+..+|+++|||..+++++++++.+..+..+....+.+|.|+|||||||||+.+.+.|+.+.+...+ ...+.++
T Consensus 24 ~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~----~~m~lel 99 (360)
T KOG0990|consen 24 SPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPT----TSMLLEL 99 (360)
T ss_pred CcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCc----hhHHHHh
Confidence 356788999999999999999999999999998888888999999999999999999999988542100 1112233
Q ss_pred ehhhhhcCccccchHHHHHHHHHHHHHh------cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEE
Q psy14500 94 DIALLLAGTKYRGEFEDRLKKILKEISN------NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIG 165 (938)
Q Consensus 94 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~------~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~ 165 (938)
+.++-. .++-...+ ...|..... +.....+++||+|.+ +.+++++|++.++. .+++|+.
T Consensus 100 naSd~r----gid~vr~q-i~~fast~~~~~fst~~~fKlvILDEADaM--------T~~AQnALRRviek~t~n~rF~i 166 (360)
T KOG0990|consen 100 NASDDR----GIDPVRQQ-IHLFASTQQPTTYSTHAAFKLVILDEADAM--------TRDAQNALRRVIEKYTANTRFAT 166 (360)
T ss_pred hccCcc----CCcchHHH-HHHHHhhccceeccccCceeEEEecchhHh--------hHHHHHHHHHHHHHhccceEEEE
Confidence 332222 11111111 122222221 234679999999999 45789999998874 4678888
Q ss_pred ecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhh
Q psy14500 166 ATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAID 245 (938)
Q Consensus 166 ~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ 245 (938)
.+|++. .+.|++++||+.+.|.+.+.++....+.++++. ....++++...+.+.++.+.. +++.+
T Consensus 167 i~n~~~-----ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~----e~~~~~~~~~~a~~r~s~gDm------r~a~n 231 (360)
T KOG0990|consen 167 ISNPPQ-----KIHPAQQSRCTRFRFAPLTMAQQTERQSHIRES----EQKETNPEGYSALGRLSVGDM------RVALN 231 (360)
T ss_pred eccChh-----hcCchhhcccccCCCCCCChhhhhhHHHHHHhc----chhhcCHHHHHHHHHHhHHHH------HHHHH
Confidence 899998 899999999999999999999999999988875 567788999999999999998 89999
Q ss_pred HHHHHHHHHH
Q psy14500 246 LIDEAAAKIK 255 (938)
Q Consensus 246 ll~~a~~~~~ 255 (938)
.|+.......
T Consensus 232 ~Lqs~~~~~~ 241 (360)
T KOG0990|consen 232 YLQSILKKVM 241 (360)
T ss_pred HHHHHHHHhC
Confidence 9988766543
No 184
>KOG2028|consensus
Probab=99.60 E-value=3.8e-15 Score=153.83 Aligned_cols=190 Identities=17% Similarity=0.303 Sum_probs=128.3
Q ss_pred cccChHHHHHH---HHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhh
Q psy14500 428 RVVGQDEAISA---VSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISR 504 (938)
Q Consensus 428 ~viGq~~~~~~---l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 504 (938)
+++||++++.+ +...++..+ .++++||||||||||+||+.|+.........|+.+....-.. ..+
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~---------ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t-~dv-- 206 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNR---------IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKT-NDV-- 206 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCC---------CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccch-HHH--
Confidence 35566666633 333344333 247999999999999999999988744443455444322111 011
Q ss_pred hcCCCCCCccccccchhHHHH-----HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEec-C
Q psy14500 505 LIGAPPGYIGYEEGGYLTEIV-----RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS-N 578 (938)
Q Consensus 505 l~g~~~~~~g~~~~~~l~~~~-----~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt-n 578 (938)
+.+++.. ......|||||||++++...|+.||..+|+|.++ +|-+| .
T Consensus 207 --------------R~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~-------------lIGATTE 259 (554)
T KOG2028|consen 207 --------------RDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDIT-------------LIGATTE 259 (554)
T ss_pred --------------HHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceE-------------EEecccC
Confidence 1111111 1123479999999999999999999999987654 55444 4
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHc----cCCeEEEc
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK----MNMDLKIS 654 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~----~~~~l~~~ 654 (938)
.++. .+..+|++|| .++.+.++..+++..|+.+.+..+.+.-+. .+-.+.++
T Consensus 260 NPSF-----------------------qln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve 315 (554)
T KOG2028|consen 260 NPSF-----------------------QLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVE 315 (554)
T ss_pred CCcc-----------------------chhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhh
Confidence 4433 3567899999 699999999999999999888766543221 12235689
Q ss_pred HHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 655 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 655 ~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+.++++|+.+ ..||-+..+++|+-.+
T Consensus 316 ~siidyla~l------sdGDaR~aLN~Lems~ 341 (554)
T KOG2028|consen 316 DSIIDYLAYL------SDGDARAALNALEMSL 341 (554)
T ss_pred HHHHHHHHHh------cCchHHHHHHHHHHHH
Confidence 9999999884 4688888877777664
No 185
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.60 E-value=6.1e-15 Score=140.50 Aligned_cols=121 Identities=26% Similarity=0.422 Sum_probs=97.6
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCcc
Q psy14500 55 PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELH 134 (938)
Q Consensus 55 vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid 134 (938)
|||+||||||||++|+.+|+.+ +.+++.+++..+. ..+.++....+..+|..+.....|+||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------ccccccccccccc--cccccccccccccccccccccccceeeeeccch
Confidence 6899999999999999999998 7899999998887 446788888999999998755558999999999
Q ss_pred ccccCCCCCC---ccchhhhhhhhccC-----CceEEEEecChhHHHHhhhcCHHHH-cccce-EEee
Q psy14500 135 TMIGTGKVEG---SIDAGNMLKPELSR-----GELHCIGATTLNEYRQYIEKDAAFE-RRFQK-ILVE 192 (938)
Q Consensus 135 ~l~~~~~~~~---~~~~~~~L~~~l~~-----~~i~vI~~tn~~~~~~~~~ld~al~-~Rf~~-i~~~ 192 (938)
.+.+..+... .....+.|...++. ..+.+|++||..+ .+++++. +||+. |+++
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred hcccccccccccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 9988762211 12344555555532 4699999999988 8999999 99986 7775
No 186
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=99.60 E-value=6.5e-15 Score=157.78 Aligned_cols=159 Identities=22% Similarity=0.312 Sum_probs=111.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCcccccccc
Q psy14500 623 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 702 (938)
Q Consensus 623 ~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~G 702 (938)
.++.+++.+++.... +.+.....-+.++.. ...+.+.+|||||++..|.++++..++.++.+.++|+|
T Consensus 19 ~l~~~~i~~L~~~a~----~il~~ep~vl~i~~~--------~~~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFLG 86 (321)
T cd07420 19 LLHAKYVLLILREAR----KVLKQLPNISRVSTS--------ISKQVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNG 86 (321)
T ss_pred CCCHHHHHHHHHHHH----HHHHhCCCEEEecCC--------CCCCeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEec
Confidence 456666666654433 333333322333221 12356889999999999999999988765667899999
Q ss_pred ccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhC--CCCHHHHHHHHhcCCceEE
Q psy14500 703 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILD--APDKKKLVSWLRTQPLAIY 776 (938)
Q Consensus 703 D~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~lp~~~~ 776 (938)
||+|||+.+++|+.+++.+ +++++++|||||.+.++...+... +....+.. ......+.+++..||++..
T Consensus 87 DyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yGf~~----e~~~~y~~~~~~l~~~~~~~F~~LPlaai 162 (321)
T cd07420 87 DFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYGFTK----EVMSKYKLHGKKILRLLEDVFSWLPLATI 162 (321)
T ss_pred cccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcChHH----HHHHHhCccHHHHHHHHHHHHHhCCceEE
Confidence 9999999999999999887 357889999999999876544221 11111110 1123568899999999977
Q ss_pred eC-CEEEEecccCcCCCHHHHH
Q psy14500 777 YK-KYLMIHAGVAKQWTAQQTI 797 (938)
Q Consensus 777 ~~-~~~~vHAg~~p~~~~~~~~ 797 (938)
.+ ++++||||++|.+..++-.
T Consensus 163 i~~~i~cvHGGi~~~~~l~~i~ 184 (321)
T cd07420 163 IDNKILVVHGGISDSTDLDLLD 184 (321)
T ss_pred EcCCEEEEeCCCCCccCHHHHH
Confidence 64 6999999999865555433
No 187
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=9.8e-15 Score=163.05 Aligned_cols=201 Identities=18% Similarity=0.259 Sum_probs=128.7
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC----ce-EEeccccccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SI-IRIDMSEFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~----~~-~~~~~~~~~~~~ 500 (938)
.+.++||+++++.+.+++...+. .+.+||+||||+|||++|+++|+.++.... |. .+..|.++....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~--------~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRI--------HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGL 86 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCC--------CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 35789999999999999875432 236799999999999999999999853211 10 000111111100
Q ss_pred hhhhhcC-CCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEE
Q psy14500 501 SISRLIG-APPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 575 (938)
Q Consensus 501 ~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 575 (938)
.. .++- .+....+.+..+.+...+.. ....|++|||+|+++...++.|++.+++ +..++.||+
T Consensus 87 ~~-d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe-----------~~~~~~fIl 154 (363)
T PRK14961 87 CL-DLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPQHIKFIL 154 (363)
T ss_pred CC-ceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCeEEEE
Confidence 00 0000 00001111222223333322 2357999999999999999999999997 445677888
Q ss_pred ecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcH
Q psy14500 576 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 655 (938)
Q Consensus 576 ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 655 (938)
+|+.. ..+.+.+.+|| ..+.|.|++.+++.+++...+. ..+ +.+++
T Consensus 155 ~t~~~------------------------~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~-------~~g--~~i~~ 200 (363)
T PRK14961 155 ATTDV------------------------EKIPKTILSRC-LQFKLKIISEEKIFNFLKYILI-------KES--IDTDE 200 (363)
T ss_pred EcCCh------------------------HhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHH-------HcC--CCCCH
Confidence 77642 12567899999 6999999999999988655443 334 66899
Q ss_pred HHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 656 AALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 656 ~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+++++++..+ -||+......++++.
T Consensus 201 ~al~~ia~~s------~G~~R~al~~l~~~~ 225 (363)
T PRK14961 201 YALKLIAYHA------HGSMRDALNLLEHAI 225 (363)
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 9999998843 244544444454443
No 188
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.2e-14 Score=166.07 Aligned_cols=200 Identities=18% Similarity=0.240 Sum_probs=132.0
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC----c-----eEEeccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----S-----IIRIDMSEF 496 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~----~-----~~~~~~~~~ 496 (938)
...++||+++++.+.+++...+. .+++||+||+|||||++|+++|+.++.... + ..+..|..+
T Consensus 20 f~dliGq~~vv~~L~~ai~~~ri--------~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i 91 (507)
T PRK06645 20 FAELQGQEVLVKVLSYTILNDRL--------AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISF 91 (507)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHH
Confidence 35688999999999998875442 247999999999999999999999954211 0 011111111
Q ss_pred cchh--hhhhhcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 497 IEKH--SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 497 ~~~~--~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
.... .+..+ +. .+..|.+..+.+.+.+.. +.+.|+||||++.++...++.|++.|++ +...
T Consensus 92 ~~~~h~Dv~ei-da-as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe-----------pp~~ 158 (507)
T PRK06645 92 NNHNHPDIIEI-DA-ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE-----------PPPH 158 (507)
T ss_pred hcCCCCcEEEe-ec-cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh-----------cCCC
Confidence 1110 00011 10 112233333334444433 3468999999999999999999999996 5567
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
++||++|+.. ..+.+.+.+|| ..+.|.+++.+++..++...+. ..+
T Consensus 159 ~vfI~aTte~------------------------~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~-------~eg-- 204 (507)
T PRK06645 159 IIFIFATTEV------------------------QKIPATIISRC-QRYDLRRLSFEEIFKLLEYITK-------QEN-- 204 (507)
T ss_pred EEEEEEeCCh------------------------HHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHH-------HcC--
Confidence 7888877641 23567899999 5899999999999999666554 344
Q ss_pred EEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 651 LKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 651 l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+.+++++++.|+..+ -|++......+++++
T Consensus 205 i~ie~eAL~~Ia~~s------~GslR~al~~Ldkai 234 (507)
T PRK06645 205 LKTDIEALRIIAYKS------EGSARDAVSILDQAA 234 (507)
T ss_pred CCCCHHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 667899999988733 234444433355554
No 189
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.59 E-value=1.7e-14 Score=167.30 Aligned_cols=225 Identities=15% Similarity=0.190 Sum_probs=167.6
Q ss_pred ccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCC
Q psy14500 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 508 (938)
Q Consensus 429 viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 508 (938)
++|.+..+..+...+.... ....+++++|++||||+++|++++....+...+|+.+||+.+........+||.
T Consensus 141 lig~s~~~~~~~~~i~~~~-------~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~ 213 (441)
T PRK10365 141 MVGKSPAMQHLLSEIALVA-------PSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGH 213 (441)
T ss_pred eEecCHHHHHHHHHHhhcc-------CCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCC
Confidence 3455555555544443222 112369999999999999999999988877889999999998776666788887
Q ss_pred CCCCc-cccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhh
Q psy14500 509 PPGYI-GYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 587 (938)
Q Consensus 509 ~~~~~-g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 587 (938)
..+.. |... ...+.+..+.+|+||||||+.+++..|..|+.+++++.+...++......++.+|+||+.+.....
T Consensus 214 ~~~~~~~~~~--~~~g~~~~a~~gtl~ldei~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~-- 289 (441)
T PRK10365 214 EKGAFTGADK--RREGRFVEADGGTLFLDEIGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEV-- 289 (441)
T ss_pred CCCCcCCCCc--CCCCceeECCCCEEEEeccccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHH--
Confidence 66532 2211 112345567789999999999999999999999999988765554444567889999987654322
Q ss_pred hcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhh
Q psy14500 588 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 664 (938)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 664 (938)
....|+++|+.|+.. .|.+||+.+ +|+..++..++.++....... ...+++++++.|..
T Consensus 290 ---------------~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~- 351 (441)
T PRK10365 290 ---------------NAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA--VKGFTPQAMDLLIH- 351 (441)
T ss_pred ---------------HcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCC--CCCcCHHHHHHHHh-
Confidence 245699999999965 778888875 689999998888876654332 14599999999988
Q ss_pred cccccccccccccchHHHHHHH
Q psy14500 665 GFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 665 ~~~~~~~~~dl~~~~~~l~~~l 686 (938)
|+|+.+++.+.+. +++++
T Consensus 352 -~~wpgN~reL~~~---~~~~~ 369 (441)
T PRK10365 352 -YDWPGNIRELENA---VERAV 369 (441)
T ss_pred -CCCCCHHHHHHHH---HHHHH
Confidence 7888889888888 77766
No 190
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.59 E-value=1.5e-14 Score=160.88 Aligned_cols=185 Identities=13% Similarity=0.176 Sum_probs=128.3
Q ss_pred CCCCccccHHHHHHHHHHHhcCC----------CCCcEEEcCCCChHHHHHHHHHHHHHcCCCC--CC-----------c
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQRRS----------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVP--NS-----------L 85 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~~~~----------~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p--~~-----------~ 85 (938)
.|++|+||+.+++.|...+..+. ++.+||+||||+|||++|+++|+.+.+.... .. .
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 58899999999999999998764 4458999999999999999999988654210 00 0
Q ss_pred CCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--c
Q psy14500 86 LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--E 160 (938)
Q Consensus 86 ~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~ 160 (938)
.-..++.+..... . . ....++.+++.+... ++..|+||||+|.|.. ..+|.|+..|+.. +
T Consensus 83 ~hpD~~~i~~~~~---~--i--~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------~aanaLLk~LEep~~~ 147 (394)
T PRK07940 83 THPDVRVVAPEGL---S--I--GVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------RAANALLKAVEEPPPR 147 (394)
T ss_pred CCCCEEEeccccc---c--C--CHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------HHHHHHHHHhhcCCCC
Confidence 0011222222110 0 1 112466777766522 3456999999999943 4668899899862 3
Q ss_pred eEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCc
Q psy14500 161 LHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 240 (938)
Q Consensus 161 i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 240 (938)
.++|.+|+.+. .+.|+++|||..+.|++|+.++....+.. . ..+++++...++.+++++.
T Consensus 148 ~~fIL~a~~~~-----~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~------~~~~~~~a~~la~~s~G~~------ 207 (394)
T PRK07940 148 TVWLLCAPSPE-----DVLPTIRSRCRHVALRTPSVEAVAEVLVR---R------DGVDPETARRAARASQGHI------ 207 (394)
T ss_pred CeEEEEECChH-----HChHHHHhhCeEEECCCCCHHHHHHHHHH---h------cCCCHHHHHHHHHHcCCCH------
Confidence 44444444455 78999999999999999999998777752 1 1356788888899988876
Q ss_pred hhhhhHHH
Q psy14500 241 DKAIDLID 248 (938)
Q Consensus 241 ~~a~~ll~ 248 (938)
..+..++.
T Consensus 208 ~~A~~l~~ 215 (394)
T PRK07940 208 GRARRLAT 215 (394)
T ss_pred HHHHHHhc
Confidence 66666543
No 191
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.59 E-value=3.3e-14 Score=157.95 Aligned_cols=179 Identities=18% Similarity=0.216 Sum_probs=126.6
Q ss_pred HHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14500 416 EKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 495 (938)
Q Consensus 416 ~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 495 (938)
..+..+...+.+.++|++++++.+..++... +++||.||||||||++|++||..+...+ +|....+.-
T Consensus 9 ~~i~~l~~~l~~~i~gre~vI~lll~aalag-----------~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~f 76 (498)
T PRK13531 9 ERISRLSSALEKGLYERSHAIRLCLLAALSG-----------ESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRF 76 (498)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHccC-----------CCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeee
Confidence 4466788999999999999999999988633 2799999999999999999999875433 555554432
Q ss_pred ccchhhhhhhcCCCCCCccccccchhH----HHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCe
Q psy14500 496 FIEKHSISRLIGAPPGYIGYEEGGYLT----EIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 571 (938)
Q Consensus 496 ~~~~~~~~~l~g~~~~~~g~~~~~~l~----~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 571 (938)
.+ ...+||...-+...+.+ .+. +.+..+ .+||+|||.++++..|+.||.+|+++.++. +|.+.....-
T Consensus 77 tt----p~DLfG~l~i~~~~~~g-~f~r~~~G~L~~A--~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~r 148 (498)
T PRK13531 77 ST----PEEVFGPLSIQALKDEG-RYQRLTSGYLPEA--EIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPMR 148 (498)
T ss_pred cC----cHHhcCcHHHhhhhhcC-chhhhcCCccccc--cEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCCc
Confidence 11 12556642111111111 111 111122 399999999999999999999999999886 5666666666
Q ss_pred EEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCC-HHHHHHHHHH
Q psy14500 572 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN-RKNILSIANI 635 (938)
Q Consensus 572 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~-~e~~~~i~~~ 635 (938)
++++|||.-++ .+.|.+++++||-..+.+++++ .++..+++..
T Consensus 149 fiv~ATN~LPE---------------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 149 LLVTASNELPE---------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EEEEECCCCcc---------------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 77778874222 2457789999996689999997 4666777653
No 192
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=6.4e-15 Score=170.06 Aligned_cols=200 Identities=16% Similarity=0.242 Sum_probs=131.3
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc------ccch
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE------FIEK 499 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~------~~~~ 499 (938)
.++|+||+++++.|.+++...+. .+.+||+||+|||||++|+++|+.++..... ...-|.. +...
T Consensus 15 FddIIGQe~vv~~L~~ai~~~rl--------~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~-~~~pCg~C~sCr~i~~g 85 (709)
T PRK08691 15 FADLVGQEHVVKALQNALDEGRL--------HHAYLLTGTRGVGKTTIARILAKSLNCENAQ-HGEPCGVCQSCTQIDAG 85 (709)
T ss_pred HHHHcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCcHHHHHHHHHHHhcccCCC-CCCCCcccHHHHHHhcc
Confidence 35789999999999999985432 2468999999999999999999998543211 0001111 1000
Q ss_pred hhhhhhc-CCCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 500 HSISRLI-GAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 500 ~~~~~l~-g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
... .++ -......|.+..+.+...+. ...+.|+||||+++++...++.||+.|++ ...+++||
T Consensus 86 ~~~-DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-----------Pp~~v~fI 153 (709)
T PRK08691 86 RYV-DLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVKFI 153 (709)
T ss_pred Ccc-ceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-----------CCCCcEEE
Confidence 000 000 00011122222233333222 23468999999999999999999999996 45667888
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
++|+... .+.+.+++|| ..+.|.+++.+++...+...+ ...+ +.++
T Consensus 154 LaTtd~~------------------------kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il-------~kEg--i~id 199 (709)
T PRK08691 154 LATTDPH------------------------KVPVTVLSRC-LQFVLRNMTAQQVADHLAHVL-------DSEK--IAYE 199 (709)
T ss_pred EEeCCcc------------------------ccchHHHHHH-hhhhcCCCCHHHHHHHHHHHH-------HHcC--CCcC
Confidence 8887533 3557788999 689999999999988865544 3445 6789
Q ss_pred HHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 655 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 655 ~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
++++..|++.+ -|++...+..+++++
T Consensus 200 ~eAL~~Ia~~A------~GslRdAlnLLDqai 225 (709)
T PRK08691 200 PPALQLLGRAA------AGSMRDALSLLDQAI 225 (709)
T ss_pred HHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 99999998843 244444444455554
No 193
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=2.3e-14 Score=167.45 Aligned_cols=201 Identities=18% Similarity=0.278 Sum_probs=133.6
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEe---ccccccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRI---DMSEFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~--~~~~---~~~~~~~~~ 500 (938)
.+.++||+++++.+.+++...+. .+.+||+||+|||||++|+.+|+.++....+ ..+. +|..+....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~--------~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKI--------SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGS 86 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCC
Confidence 46789999999999999986442 2468999999999999999999998543211 0001 111111100
Q ss_pred hhh-hhcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEE
Q psy14500 501 SIS-RLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 575 (938)
Q Consensus 501 ~~~-~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 575 (938)
... ..+. ..+..|.+..+.+.+.+.. +.+.|+||||+|.++...+|+|++.||+ +..+++||+
T Consensus 87 ~~dv~eid-aas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-----------pp~~~ifIl 154 (559)
T PRK05563 87 LMDVIEID-AASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-----------PPAHVIFIL 154 (559)
T ss_pred CCCeEEee-ccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 000 0000 0112233333445444443 3468999999999999999999999997 556788888
Q ss_pred ecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcH
Q psy14500 576 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 655 (938)
Q Consensus 576 ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 655 (938)
+|+.. ..+.+.+.+|| ..+.|.+++.+++...+...+ ...| +.+++
T Consensus 155 att~~------------------------~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~-------~~eg--i~i~~ 200 (559)
T PRK05563 155 ATTEP------------------------HKIPATILSRC-QRFDFKRISVEDIVERLKYIL-------DKEG--IEYED 200 (559)
T ss_pred EeCCh------------------------hhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 87642 23678899999 489999999999888855544 3345 66789
Q ss_pred HHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 656 AALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 656 ~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+++..|+..+ -|++...+..+++++
T Consensus 201 ~al~~ia~~s------~G~~R~al~~Ldq~~ 225 (559)
T PRK05563 201 EALRLIARAA------EGGMRDALSILDQAI 225 (559)
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 9999998733 244444434455444
No 194
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=1.6e-14 Score=164.86 Aligned_cols=201 Identities=17% Similarity=0.284 Sum_probs=132.8
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce-----EEeccccccchhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI-----IRIDMSEFIEKHS 501 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~-----~~~~~~~~~~~~~ 501 (938)
+.++||+++++.+...++..+. .+.+||+||+|+|||++|+++++.++....+- .+-.|........
T Consensus 14 deiiGqe~v~~~L~~~I~~grl--------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRL--------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCC
Confidence 5689999999999999975542 23579999999999999999999985432110 0111111110000
Q ss_pred hhhhcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEec
Q psy14500 502 ISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 577 (938)
Q Consensus 502 ~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 577 (938)
...+.+......|.+..+.+...... +.+.|++|||+|.++.+++++||+.||+ +...++||++|
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-----------pp~~t~FIL~t 154 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-----------PPSYVKFILAT 154 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-----------cCCceEEEEEE
Confidence 00000111111122222222222221 3467999999999999999999999997 55678888888
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHH
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 657 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 657 (938)
+.. ..+.+++.+|| .++.|.|++.+++.+.+...+ ...| +.+++++
T Consensus 155 td~------------------------~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il-------~~EG--i~i~~~A 200 (535)
T PRK08451 155 TDP------------------------LKLPATILSRT-QHFRFKQIPQNSIISHLKTIL-------EKEG--VSYEPEA 200 (535)
T ss_pred CCh------------------------hhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHH-------HHcC--CCCCHHH
Confidence 752 23668899999 599999999999888855444 3345 6679999
Q ss_pred HHHHHhhcccccccccccccchHHHHHHH
Q psy14500 658 LKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 658 ~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+..|+..+ -||+......+++++
T Consensus 201 l~~Ia~~s------~GdlR~alnlLdqai 223 (535)
T PRK08451 201 LEILARSG------NGSLRDTLTLLDQAI 223 (535)
T ss_pred HHHHHHHc------CCcHHHHHHHHHHHH
Confidence 99998843 356666655566555
No 195
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=1.5e-14 Score=169.02 Aligned_cols=186 Identities=23% Similarity=0.369 Sum_probs=127.7
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce---EEeccccccchhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI---IRIDMSEFIEKHSI 502 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~---~~~~~~~~~~~~~~ 502 (938)
.+.|+||+.+++.+..++...+. .+.+||+||+|+|||++|+++|+.++...... .+-.|......+ .
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl--------~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~-~ 87 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKI--------SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNS-L 87 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCC-C
Confidence 45689999999999999985542 24689999999999999999999985432111 111121111000 0
Q ss_pred hhhcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecC
Q psy14500 503 SRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 578 (938)
Q Consensus 503 ~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 578 (938)
.-+.+...+..|.+..+.+...+.. +.+.|++|||+|.++..++++|++.||+ +...++||++|+
T Consensus 88 Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE-----------PP~~tifILaTt 156 (725)
T PRK07133 88 DIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE-----------PPKHVIFILATT 156 (725)
T ss_pred cEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-----------CCCceEEEEEcC
Confidence 0000111122333334455555543 4468999999999999999999999997 556778888886
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHH
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 658 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 658 (938)
.. ..+.+.+.+|| ..+.|.+++.+++.+.+...+ ...+ +.++++++
T Consensus 157 e~------------------------~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il-------~keg--I~id~eAl 202 (725)
T PRK07133 157 EV------------------------HKIPLTILSRV-QRFNFRRISEDEIVSRLEFIL-------EKEN--ISYEKNAL 202 (725)
T ss_pred Ch------------------------hhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHH-------HHcC--CCCCHHHH
Confidence 42 23667899999 499999999999998865544 3334 66788888
Q ss_pred HHHHhhc
Q psy14500 659 KKISNIG 665 (938)
Q Consensus 659 ~~L~~~~ 665 (938)
..|+..+
T Consensus 203 ~~LA~lS 209 (725)
T PRK07133 203 KLIAKLS 209 (725)
T ss_pred HHHHHHc
Confidence 8888743
No 196
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.4e-14 Score=164.97 Aligned_cols=200 Identities=19% Similarity=0.292 Sum_probs=131.5
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEeccc---cccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMS---EFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~---~~~~~~ 500 (938)
.++|+||+.+++.|.+++...+. .+.+||+||+|||||++|+++|+.++..... ..+..|. .+....
T Consensus 15 f~dIiGQe~v~~~L~~ai~~~ri--------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~ 86 (624)
T PRK14959 15 FAEVAGQETVKAILSRAAQENRV--------APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGM 86 (624)
T ss_pred HHHhcCCHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCC
Confidence 35678999999999999975442 2479999999999999999999999642110 0011111 110000
Q ss_pred --hhhhhcCCCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 501 --SISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 501 --~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
++..+-+ ....+.+..+.+...+. ...+.||||||+|.++...++.|++.||+ ...+++||
T Consensus 87 hpDv~eId~--a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-----------P~~~~ifI 153 (624)
T PRK14959 87 HVDVVEIDG--ASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE-----------PPARVTFV 153 (624)
T ss_pred CCceEEEec--ccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-----------cCCCEEEE
Confidence 0000101 01122222233333332 34568999999999999999999999997 44567888
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
++||... .+.+.+.+||. ++.|.+++.+++..++...+ ...+ +.++
T Consensus 154 LaTt~~~------------------------kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il-------~~eg--i~id 199 (624)
T PRK14959 154 LATTEPH------------------------KFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVL-------GREG--VDYD 199 (624)
T ss_pred EecCChh------------------------hhhHHHHhhhh-ccccCCCCHHHHHHHHHHHH-------HHcC--CCCC
Confidence 8887522 35567899994 88999999999998865533 3334 6689
Q ss_pred HHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 655 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 655 ~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+++++.|+..+ -||+...+..+++++
T Consensus 200 ~eal~lIA~~s------~GdlR~Al~lLeqll 225 (624)
T PRK14959 200 PAAVRLIARRA------AGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 99999998843 355555544455443
No 197
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=9.8e-15 Score=171.39 Aligned_cols=202 Identities=21% Similarity=0.298 Sum_probs=135.4
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC----ce-EEeccccccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SI-IRIDMSEFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~----~~-~~~~~~~~~~~~ 500 (938)
.++++||+++++.+.+.+...+. .+.+||+||+|+|||++|+++|+.++.... ++ .+..|.++....
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~--------~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRV--------AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGR 86 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCC
Confidence 46789999999999999975442 246899999999999999999999864321 10 011111111111
Q ss_pred hhhhhcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEe
Q psy14500 501 SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 576 (938)
Q Consensus 501 ~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 576 (938)
...-+.-...+..|.+..+.+...+.. +.+.|+||||+|.++...+|.|++.||+ +..+++||++
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-----------pp~~~~fIl~ 155 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-----------PPPHVKFIFA 155 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-----------CCCCeEEEEE
Confidence 110000001112333344445444443 3468999999999999999999999997 5677888888
Q ss_pred cCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHH
Q psy14500 577 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 656 (938)
Q Consensus 577 tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 656 (938)
|+.. ..+.+.+.+|| ..+.|.+++.+++...+...+ +..+ +.++++
T Consensus 156 t~~~------------------------~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~-------~~eg--i~i~~~ 201 (576)
T PRK14965 156 TTEP------------------------HKVPITILSRC-QRFDFRRIPLQKIVDRLRYIA-------DQEG--ISISDA 201 (576)
T ss_pred eCCh------------------------hhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHH-------HHhC--CCCCHH
Confidence 8743 23567899999 599999999999888755444 3345 678999
Q ss_pred HHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 657 ALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 657 ~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
++..|+..+ -||+......+++++
T Consensus 202 al~~la~~a------~G~lr~al~~Ldqli 225 (576)
T PRK14965 202 ALALVARKG------DGSMRDSLSTLDQVL 225 (576)
T ss_pred HHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 999998843 245544444466555
No 198
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.58 E-value=3.6e-14 Score=148.60 Aligned_cols=189 Identities=12% Similarity=0.124 Sum_probs=131.6
Q ss_pred CCCCcc-c-cHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccc
Q psy14500 29 KLDPVI-G-RDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRG 106 (938)
Q Consensus 29 ~~~~lv-G-~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g 106 (938)
+|++++ | ...++..+..+......++++|+||||||||+|++++++.+... +..+..++......
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~------ 86 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAW------ 86 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhh------
Confidence 677776 4 44566666666556666789999999999999999999987432 34555555544221
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHHHHccc
Q psy14500 107 EFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRF 186 (938)
Q Consensus 107 ~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al~~Rf 186 (938)
....+++...... +|+|||++.+.... .....+.+.+....+.++..+|.|++.+.. ....+.|.|++||
T Consensus 87 ----~~~~~~~~~~~~d---lliiDdi~~~~~~~--~~~~~lf~l~n~~~e~g~~~li~ts~~~p~-~l~~~~~~L~SRl 156 (235)
T PRK08084 87 ----FVPEVLEGMEQLS---LVCIDNIECIAGDE--LWEMAIFDLYNRILESGRTRLLITGDRPPR-QLNLGLPDLASRL 156 (235)
T ss_pred ----hhHHHHHHhhhCC---EEEEeChhhhcCCH--HHHHHHHHHHHHHHHcCCCeEEEeCCCChH-HcCcccHHHHHHH
Confidence 1122233333222 89999999885432 111234566667777777667676665442 2223679999999
Q ss_pred ---ceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHH
Q psy14500 187 ---QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 187 ---~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 250 (938)
..+.+.+|+.+++.++++..... .++.++++++++++..+.+.. +.+..+++..
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~~~a~~----~~~~l~~~v~~~L~~~~~~d~------r~l~~~l~~l 213 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQLRARL----RGFELPEDVGRFLLKRLDREM------RTLFMTLDQL 213 (235)
T ss_pred hCCceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhhcCCH------HHHHHHHHHH
Confidence 46999999999999999865543 479999999999999999888 7777777664
No 199
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.58 E-value=7.1e-15 Score=165.25 Aligned_cols=197 Identities=22% Similarity=0.306 Sum_probs=142.7
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce--EEecccc---ccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDMSE---FIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~~~---~~~~~ 500 (938)
+++++||+++++.|.+++...+.. +.+||+||-|||||++||.+|+.++....+. .+..|.. +....
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~--------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIA--------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGS 86 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcch--------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCC
Confidence 456799999999999999876643 4799999999999999999999996543111 1222221 21110
Q ss_pred hhhhhcCCCCCCccccccchhHHHHHhCC----CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEe
Q psy14500 501 SISRLIGAPPGYIGYEEGGYLTEIVRRKP----YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 576 (938)
Q Consensus 501 ~~~~l~g~~~~~~g~~~~~~l~~~~~~~~----~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 576 (938)
...-+-=...+..|.++.+.+.+.+...| +.|++|||++.++..++|+||+.||+ ++.+++||++
T Consensus 87 ~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-----------PP~hV~FIlA 155 (515)
T COG2812 87 LIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-----------PPSHVKFILA 155 (515)
T ss_pred cccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-----------CccCeEEEEe
Confidence 00000001122345666667766665444 78999999999999999999999998 8899999998
Q ss_pred cCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHH
Q psy14500 577 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 656 (938)
Q Consensus 577 tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 656 (938)
|... .++++.+++|| ..+.|..++.+++...+...+ ...+ +.++++
T Consensus 156 TTe~------------------------~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~-------~~E~--I~~e~~ 201 (515)
T COG2812 156 TTEP------------------------QKIPNTILSRC-QRFDFKRLDLEEIAKHLAAIL-------DKEG--INIEED 201 (515)
T ss_pred cCCc------------------------CcCchhhhhcc-ccccccCCCHHHHHHHHHHHH-------HhcC--CccCHH
Confidence 8863 34788999999 499999999998888754444 4445 889999
Q ss_pred HHHHHHhhcccccccccccccc
Q psy14500 657 ALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 657 ~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
++..+++.+ .++.||--..
T Consensus 202 aL~~ia~~a---~Gs~RDalsl 220 (515)
T COG2812 202 ALSLIARAA---EGSLRDALSL 220 (515)
T ss_pred HHHHHHHHc---CCChhhHHHH
Confidence 999998854 2445665555
No 200
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.58 E-value=4.9e-14 Score=166.55 Aligned_cols=213 Identities=18% Similarity=0.203 Sum_probs=142.6
Q ss_pred HhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 17 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 17 ~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
...++.+.+||.+|++++|++..++.++..+....+.+++|+|||||||||+|+++++............+.+++.+++.
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~ 219 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT 219 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech
Confidence 34677888999999999999999999998888787889999999999999999999887633211111124567777765
Q ss_pred hhhcCc-----cccchHH----HHHHHHHHHHH---------hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC
Q psy14500 97 LLLAGT-----KYRGEFE----DRLKKILKEIS---------NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR 158 (938)
Q Consensus 97 ~l~~~~-----~~~g~~~----~~l~~~~~~a~---------~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~ 158 (938)
.+.... ...|... ...+..+.... ......+|||||++.|.. ..+..|+..++.
T Consensus 220 ~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 220 TLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------LLQNKLLKVLED 291 (615)
T ss_pred hccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------HHHHHHHHHHhh
Confidence 431100 0111110 00111111000 011134999999999843 445556555543
Q ss_pred C------------------------------ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhh
Q psy14500 159 G------------------------------ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQK 208 (938)
Q Consensus 159 ~------------------------------~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~ 208 (938)
+ .+++|++|+... ..+++++++||..+.|++++.+++..|++..+.
T Consensus 292 ~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~----~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 292 KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP----EEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred CeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc----cccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 2 357777766543 168999999999999999999999999998877
Q ss_pred hhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHH
Q psy14500 209 KYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 209 ~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 252 (938)
+ .++.++++++..++..+.. .++++..|..+..
T Consensus 368 ~----~~v~ls~eal~~L~~ys~~-------gRraln~L~~~~~ 400 (615)
T TIGR02903 368 K----INVHLAAGVEELIARYTIE-------GRKAVNILADVYG 400 (615)
T ss_pred H----cCCCCCHHHHHHHHHCCCc-------HHHHHHHHHHHHH
Confidence 5 3567889988888776431 2566666666543
No 201
>KOG0742|consensus
Probab=99.57 E-value=1.7e-14 Score=151.01 Aligned_cols=185 Identities=18% Similarity=0.213 Sum_probs=130.4
Q ss_pred HHHHHhhhHHHHH----hcCC-CCCccccHHHHHHHHHHHh--------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcC
Q psy14500 13 YLKKYTIDLTEKA----RLGK-LDPVIGRDDEIRRAIQVLQ--------RRSKNNPVLIGEPGVGKTAIVEGLAQRIING 79 (938)
Q Consensus 13 ~~~~~~~~l~~~~----~~~~-~~~lvG~~~~~~~l~~~l~--------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~ 79 (938)
-++.+.-++.-.. +++. |+++|-....-+++..+.. ..+-.|||||||||||||++|+.||...
T Consensus 332 sls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S--- 408 (630)
T KOG0742|consen 332 SLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS--- 408 (630)
T ss_pred cHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc---
Confidence 3444544443321 3444 8888888777666665432 2333689999999999999999999876
Q ss_pred CCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc-cchhhhhhhhc--
Q psy14500 80 EVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS-IDAGNMLKPEL-- 156 (938)
Q Consensus 80 ~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~-~~~~~~L~~~l-- 156 (938)
+..+- +..+..+.. .-.+....+..+|+.++....+.+|||||+|.++-.+....- .+....|..+|
T Consensus 409 -------GlDYA-~mTGGDVAP--lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfR 478 (630)
T KOG0742|consen 409 -------GLDYA-IMTGGDVAP--LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 478 (630)
T ss_pred -------CCcee-hhcCCCccc--cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHH
Confidence 44432 222222211 112344578999999998888899999999999876655432 22222333333
Q ss_pred ---cCCceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccC
Q psy14500 157 ---SRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHG 215 (938)
Q Consensus 157 ---~~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~ 215 (938)
.+.+++++.+||.+. .+|.++.+||+. |+|+.|-.++|..+|..++++|-...+
T Consensus 479 TGdqSrdivLvlAtNrpg-----dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~ 536 (630)
T KOG0742|consen 479 TGDQSRDIVLVLATNRPG-----DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPA 536 (630)
T ss_pred hcccccceEEEeccCCcc-----chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcC
Confidence 356899999999999 899999999985 999999999999999988888754333
No 202
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.57 E-value=2.3e-14 Score=164.62 Aligned_cols=200 Identities=22% Similarity=0.258 Sum_probs=133.1
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC-ceEEecc---ccccchhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-SIIRIDM---SEFIEKHSI 502 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~-~~~~~~~---~~~~~~~~~ 502 (938)
+.|+||+++++.+..++...+. .+.+||+||||||||++|+++|+.++..+. +..+..| ..+......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l--------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~ 85 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRL--------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHP 85 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCC
Confidence 5689999999999999986542 235799999999999999999999853221 1011111 111100000
Q ss_pred -hhhcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEec
Q psy14500 503 -SRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 577 (938)
Q Consensus 503 -~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 577 (938)
-..++. .+..+.+..+.+...+.. ..+.||||||++.++...++.|++.|++ +..++++|+++
T Consensus 86 dv~el~~-~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-----------p~~~t~~Il~t 153 (504)
T PRK14963 86 DVLEIDA-ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-----------PPEHVIFILAT 153 (504)
T ss_pred ceEEecc-cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-----------CCCCEEEEEEc
Confidence 000011 112222223334333332 3467999999999999999999999996 44567788888
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHH
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 657 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 657 (938)
+.. ..+.+.+.+|| ..+.|.+++.+++...+...+ ...| +.+++++
T Consensus 154 ~~~------------------------~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~-------~~eg--i~i~~~A 199 (504)
T PRK14963 154 TEP------------------------EKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLL-------EAEG--REAEPEA 199 (504)
T ss_pred CCh------------------------hhCChHHhcce-EEEEecCCCHHHHHHHHHHHH-------HHcC--CCCCHHH
Confidence 742 23667889999 599999999999999855544 3445 5679999
Q ss_pred HHHHHhhcccccccccccccchHHHHHHH
Q psy14500 658 LKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 658 ~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+++|+..+ -||+......|++++
T Consensus 200 l~~ia~~s------~GdlR~aln~Lekl~ 222 (504)
T PRK14963 200 LQLVARLA------DGAMRDAESLLERLL 222 (504)
T ss_pred HHHHHHHc------CCCHHHHHHHHHHHH
Confidence 99998843 356666655566665
No 203
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=4.3e-14 Score=162.00 Aligned_cols=200 Identities=20% Similarity=0.291 Sum_probs=132.8
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce--EEecccccc---chh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDMSEFI---EKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~~~~~---~~~ 500 (938)
.+.++||+.+++.+..++...+. .+++||+||+|+|||++|+++|+.++.....- .+..|.... ...
T Consensus 15 F~dIIGQe~iv~~L~~aI~~~rl--------~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~ 86 (605)
T PRK05896 15 FKQIIGQELIKKILVNAILNNKL--------THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQ 86 (605)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCC
Confidence 35688999999999999875442 24799999999999999999999985432111 111121110 000
Q ss_pred --hhhhhcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 501 --SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 501 --~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
....+ ...+..|.+..+.+...+.. +++.|++|||+|.++.+.+++|++.||+ +...+++|
T Consensus 87 h~DiieI--daas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-----------Pp~~tvfI 153 (605)
T PRK05896 87 SVDIVEL--DAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-----------PPKHVVFI 153 (605)
T ss_pred CCceEEe--ccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-----------CCCcEEEE
Confidence 00000 00112233333444443333 3468999999999999999999999997 55678888
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
++|+.. ..+.+.+.+||. ++.|.+++.+++...+...+. ..+ +.++
T Consensus 154 L~Tt~~------------------------~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~-------keg--i~Is 199 (605)
T PRK05896 154 FATTEF------------------------QKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAK-------KEK--IKIE 199 (605)
T ss_pred EECCCh------------------------HhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHH-------HcC--CCCC
Confidence 888742 235678999995 899999999999988655443 334 5688
Q ss_pred HHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 655 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 655 ~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+++++.++..+ -|++......++++.
T Consensus 200 ~eal~~La~lS------~GdlR~AlnlLekL~ 225 (605)
T PRK05896 200 DNAIDKIADLA------DGSLRDGLSILDQLS 225 (605)
T ss_pred HHHHHHHHHHc------CCcHHHHHHHHHHHH
Confidence 99999998743 244444444455543
No 204
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=1.6e-14 Score=167.60 Aligned_cols=201 Identities=17% Similarity=0.247 Sum_probs=132.0
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhh---
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI--- 502 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~--- 502 (938)
.+.++||+++++.+.+++...+. .+.+||+||+|+|||++|+++|+.++..... ....|........+
T Consensus 15 f~divGq~~v~~~L~~~i~~~~~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~-~~~pcg~C~~C~~i~~~ 85 (527)
T PRK14969 15 FSELVGQEHVVRALTNALEQQRL--------HHAYLFTGTRGVGKTTLARILAKSLNCETGV-TATPCGVCSACLEIDSG 85 (527)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CEEEEEECCCCCCHHHHHHHHHHHhcCCCCC-CCCCCCCCHHHHHHhcC
Confidence 35688999999999999985442 2357999999999999999999999542110 00011111000000
Q ss_pred --hhhcCC-CCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEE
Q psy14500 503 --SRLIGA-PPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 575 (938)
Q Consensus 503 --~~l~g~-~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 575 (938)
..++.. ..+..+.+..+.+...+.. +.+.|+||||+|+++...+|.||+.||+ +..+++||+
T Consensus 86 ~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-----------pp~~~~fIL 154 (527)
T PRK14969 86 RFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVKFIL 154 (527)
T ss_pred CCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC-----------CCCCEEEEE
Confidence 000000 0112222333333333333 3467999999999999999999999997 556778888
Q ss_pred ecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcH
Q psy14500 576 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 655 (938)
Q Consensus 576 ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 655 (938)
+|+... .+.+.+.+|| ..+.|.+++.+++.+.+...+ +..+ +.+++
T Consensus 155 ~t~d~~------------------------kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il-------~~eg--i~~~~ 200 (527)
T PRK14969 155 ATTDPQ------------------------KIPVTVLSRC-LQFNLKQMPPPLIVSHLQHIL-------EQEN--IPFDA 200 (527)
T ss_pred EeCChh------------------------hCchhHHHHH-HHHhcCCCCHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 876432 3556799999 699999999999988855444 3345 66899
Q ss_pred HHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 656 AALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 656 ~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+++..|+..+ -|++......+++++
T Consensus 201 ~al~~la~~s------~Gslr~al~lldqai 225 (527)
T PRK14969 201 TALQLLARAA------AGSMRDALSLLDQAI 225 (527)
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 9999998843 245555444455555
No 205
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=99.56 E-value=3.4e-14 Score=150.71 Aligned_cols=118 Identities=23% Similarity=0.417 Sum_probs=93.6
Q ss_pred ccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhcc
Q psy14500 668 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLINI 743 (938)
Q Consensus 668 ~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~ 743 (938)
+.+.+||+||++.++.++++..++ ++.+.++|+||++|||+.+++++.+++.+ +.++++++||||.+++....+.
T Consensus 29 ~i~vvGDiHG~~~~l~~ll~~~~~-~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~gf 107 (271)
T smart00156 29 PVTVCGDIHGQFDDLLRLFDLNGP-PPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESRSMNEIYGF 107 (271)
T ss_pred CEEEEEeCcCCHHHHHHHHHHcCC-CCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHHHHHHhccc
Confidence 457799999999999999988885 56789999999999999999999999876 4578999999999988755432
Q ss_pred ccCCccccHHHhhCCCCHHHHHHHHhcCCceEEeC-CEEEEecccCcCC
Q psy14500 744 NKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK-KYLMIHAGVAKQW 791 (938)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~-~~~~vHAg~~p~~ 791 (938)
.. ...........+.+.+|+..||++...+ ++++||||++|..
T Consensus 108 ~~-----e~~~~~~~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~~ 151 (271)
T smart00156 108 YD-----ECKRKYGEEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPDL 151 (271)
T ss_pred hh-----hhhhhcCHHHHHHHHHHHhhChhheEEcCeEEEEecCCCCcc
Confidence 21 0111111223467889999999998776 6999999999864
No 206
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.56 E-value=2.1e-13 Score=150.83 Aligned_cols=180 Identities=17% Similarity=0.304 Sum_probs=127.0
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++||++.++.+...+...... ..+..+++|+||||||||++|+++|+.+ +..+...+...+...
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~~------- 90 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR----GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEKP------- 90 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc----CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccCh-------
Confidence 56889999999999888755421 2334579999999999999999999998 444444443322111
Q ss_pred CCCCCCccccccchhHHHH-HhCCCEEEEEccccccCHHHHHHHHHhhcCCceec--CCC---ce--eecCCeEEEEecC
Q psy14500 507 GAPPGYIGYEEGGYLTEIV-RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD--NRG---RT--INFRNTIIVMTSN 578 (938)
Q Consensus 507 g~~~~~~g~~~~~~l~~~~-~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~--~~g---~~--~~~~~~iiI~ttn 578 (938)
..+...+ ....++|||||||+.+++..++.|+..+++..+.. ..+ .. .......+|++||
T Consensus 91 ------------~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~ 158 (328)
T PRK00080 91 ------------GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATT 158 (328)
T ss_pred ------------HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecC
Confidence 1122222 22356799999999999999999999998765321 111 11 1224467777777
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHH
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 658 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 658 (938)
... .+.+++.+||..++.|.+++.+++.+|+...+.. .+ +.++++++
T Consensus 159 ~~~------------------------~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-------~~--~~~~~~~~ 205 (328)
T PRK00080 159 RAG------------------------LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-------LG--VEIDEEGA 205 (328)
T ss_pred Ccc------------------------cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------cC--CCcCHHHH
Confidence 532 3677899999888999999999999997755443 23 67899999
Q ss_pred HHHHhhc
Q psy14500 659 KKISNIG 665 (938)
Q Consensus 659 ~~L~~~~ 665 (938)
.+|+..+
T Consensus 206 ~~ia~~~ 212 (328)
T PRK00080 206 LEIARRS 212 (328)
T ss_pred HHHHHHc
Confidence 9998843
No 207
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.56 E-value=3.6e-14 Score=165.20 Aligned_cols=223 Identities=13% Similarity=0.076 Sum_probs=146.1
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-----cEEEcCCCChHHHHHHHHHHHHHcCC----CCCCcC-CC
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-----PVLIGEPGVGKTAIVEGLAQRIINGE----VPNSLL-SK 88 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-----vLL~Gp~GtGKT~la~~la~~l~~~~----~p~~~~-~~ 88 (938)
.+|+++|+|..+++++|+++.++.+..++....... ++|+|||||||||+++.+|+.+...- .|.... ..
T Consensus 72 ~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~ 151 (637)
T TIGR00602 72 EPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQK 151 (637)
T ss_pred CchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccc
Confidence 469999999999999999999999998887543322 89999999999999999998773210 000000 00
Q ss_pred eEEEEehhhhhcCccccchHHHHHHHHHHHHHh---------cCCCeEEEEeCccccccCCCCCCccchhhhhh-hhccC
Q psy14500 89 KILLLDIALLLAGTKYRGEFEDRLKKILKEISN---------NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLK-PELSR 158 (938)
Q Consensus 89 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---------~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~-~~l~~ 158 (938)
..+.+- ..+...-.......+.++.++..+.. ...+.||||||++.++... .....+.|+ ...+.
T Consensus 152 ~~~~~~-~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----~~~lq~lLr~~~~e~ 226 (637)
T TIGR00602 152 NDHKVT-LSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----TRALHEILRWKYVSI 226 (637)
T ss_pred cccccc-hhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----HHHHHHHHHHHhhcC
Confidence 000000 00000000011122345666665542 2346799999999876432 223455566 56677
Q ss_pred CceEEEEecChhHH------HHhhh----cCHHHHc--ccceEEeeCCCHHHHHHHHHhhhhhhhcc--cCCCC-CHHHH
Q psy14500 159 GELHCIGATTLNEY------RQYIE----KDAAFER--RFQKILVEEPDIEETISILRGLQKKYEVH--HGVEI-TDPAI 223 (938)
Q Consensus 159 ~~i~vI~~tn~~~~------~~~~~----ld~al~~--Rf~~i~~~~p~~~e~~~il~~~~~~~~~~--~~~~i-~~~~l 223 (938)
+.+.+|+++|...+ ...+. +.+++++ |+..|.|.+++..+..+.|+.++...... ....+ +++++
T Consensus 227 ~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l 306 (637)
T TIGR00602 227 GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSV 306 (637)
T ss_pred CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHH
Confidence 77888887774332 11122 5588987 66679999999999999998888753221 12223 57899
Q ss_pred HHHHHhhhhccccCCCchhhhhHHHHHHH
Q psy14500 224 VAASELSYRYISDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 224 ~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 252 (938)
..++..+.|++ |.|+..|+.++.
T Consensus 307 ~~I~~~s~GDi------RsAIn~LQf~~~ 329 (637)
T TIGR00602 307 ELLCQGCSGDI------RSAINSLQFSSS 329 (637)
T ss_pred HHHHHhCCChH------HHHHHHHHHHHh
Confidence 99999999999 999999988763
No 208
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=2.8e-14 Score=166.49 Aligned_cols=187 Identities=19% Similarity=0.277 Sum_probs=127.8
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC-----ceE--Ee---cccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-----SII--RI---DMSE 495 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~-----~~~--~~---~~~~ 495 (938)
.++++||+.+++.+.+++...+. .+.+||+||+|+|||++|+++|+.++.... +.. +. .|..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri--------~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~ 94 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRI--------AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQA 94 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHH
Confidence 45789999999999999985542 247999999999999999999999854321 100 00 1111
Q ss_pred ccchhhhhhhcCCCCCCccccccchhHHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCe
Q psy14500 496 FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 571 (938)
Q Consensus 496 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 571 (938)
+.......-+.-...+..|.+..+.+.+.+... .+.|+||||+|.++...+|.|++.||+ +...+
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-----------Pp~~~ 163 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPPHV 163 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-----------CCCCe
Confidence 111000000000111233444444555555433 468999999999999999999999997 55678
Q ss_pred EEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeE
Q psy14500 572 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDL 651 (938)
Q Consensus 572 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l 651 (938)
+||++|+... ++.+.+.+|| ..+.|.+++.+++.+.+...+ +..+ +
T Consensus 164 ~fIl~tte~~------------------------kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~-------~keg--i 209 (598)
T PRK09111 164 KFIFATTEIR------------------------KVPVTVLSRC-QRFDLRRIEADVLAAHLSRIA-------AKEG--V 209 (598)
T ss_pred EEEEEeCChh------------------------hhhHHHHhhe-eEEEecCCCHHHHHHHHHHHH-------HHcC--C
Confidence 8888876421 2456789999 589999999999998865554 3345 6
Q ss_pred EEcHHHHHHHHhhc
Q psy14500 652 KISKAALKKISNIG 665 (938)
Q Consensus 652 ~~~~~~~~~L~~~~ 665 (938)
.++++++++|+...
T Consensus 210 ~i~~eAl~lIa~~a 223 (598)
T PRK09111 210 EVEDEALALIARAA 223 (598)
T ss_pred CCCHHHHHHHHHHc
Confidence 68999999998843
No 209
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.55 E-value=6.7e-14 Score=161.36 Aligned_cols=213 Identities=17% Similarity=0.167 Sum_probs=143.3
Q ss_pred HHHHHhcCCCCCccccHHHHHHHHHHHhc----CCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 21 LTEKARLGKLDPVIGRDDEIRRAIQVLQR----RSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 21 l~~~~~~~~~~~lvG~~~~~~~l~~~l~~----~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
|...|.| +.|.||++++++|..+|.. ..++++ +|+|+||||||++++.+++.+........+....++.++|
T Consensus 748 L~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINC 824 (1164)
T PTZ00112 748 MQLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEING 824 (1164)
T ss_pred cCcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeC
Confidence 3444566 6899999999999887753 444455 5999999999999999998875321111122456777887
Q ss_pred hhhhcC--------------ccccc-hHHHHHHHHHHHHHh-cCCCeEEEEeCccccccCCCCCCccch-hhhhh-hhcc
Q psy14500 96 ALLLAG--------------TKYRG-EFEDRLKKILKEISN-NQKDIIIFIDELHTMIGTGKVEGSIDA-GNMLK-PELS 157 (938)
Q Consensus 96 ~~l~~~--------------~~~~g-~~~~~l~~~~~~a~~-~~~~~iL~iDEid~l~~~~~~~~~~~~-~~~L~-~~l~ 157 (938)
..+... ....| .....+..+|..+.. .....||+|||||.|.... +++ .+.+. ....
T Consensus 825 m~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~-----QDVLYnLFR~~~~s 899 (1164)
T PTZ00112 825 MNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT-----QKVLFTLFDWPTKI 899 (1164)
T ss_pred CccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH-----HHHHHHHHHHhhcc
Confidence 332110 01111 122345666666532 2335699999999996532 222 22222 1123
Q ss_pred CCceEEEEecChhHHHHhhhcCHHHHcccce--EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhh---hh
Q psy14500 158 RGELHCIGATTLNEYRQYIEKDAAFERRFQK--ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELS---YR 232 (938)
Q Consensus 158 ~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~--i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s---~~ 232 (938)
...+.+|+++|..++.. .+++.+.+||.. |.|++++.+++..||+..++.. ...++++++..++..+ .|
T Consensus 900 ~SKLiLIGISNdlDLpe--rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~SG 973 (1164)
T PTZ00112 900 NSKLVLIAISNTMDLPE--RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVSG 973 (1164)
T ss_pred CCeEEEEEecCchhcch--hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcCC
Confidence 56789999999765433 568899999974 8999999999999998776642 2458999999999844 46
Q ss_pred ccccCCCchhhhhHHHHHHHH
Q psy14500 233 YISDRFMPDKAIDLIDEAAAK 253 (938)
Q Consensus 233 ~~~~~~~p~~a~~ll~~a~~~ 253 (938)
++ |+|+++|..|+..
T Consensus 974 DA------RKALDILRrAgEi 988 (1164)
T PTZ00112 974 DI------RKALQICRKAFEN 988 (1164)
T ss_pred HH------HHHHHHHHHHHhh
Confidence 66 8999999888753
No 210
>KOG0738|consensus
Probab=99.55 E-value=2.4e-14 Score=149.67 Aligned_cols=167 Identities=22% Similarity=0.320 Sum_probs=120.7
Q ss_pred ccccChHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~---~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
++|.|..++++-|.+++-..-. -++.-.+|...+|++||||||||+||+++|.++ +..|+.+.-+.++++
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSsstltSK---- 284 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSSSTLTSK---- 284 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh---cCeEEEechhhhhhh----
Confidence 3566777777777776643210 111223555689999999999999999999998 667777766666553
Q ss_pred hhcCCCCCCcccccc--chhHHHHHhCCCEEEEEcccccc------------CHHHHHHHHHhhcCCceecCCCceeecC
Q psy14500 504 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA------------NSDVFNILLQILDDGRLTDNRGRTINFR 569 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 569 (938)
|.|.++. +.+++..+...+++|||||||.+ +..+-+.||..||. . +.+....
T Consensus 285 --------wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG-~-----~~t~e~~ 350 (491)
T KOG0738|consen 285 --------WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDG-V-----QGTLENS 350 (491)
T ss_pred --------hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhc-c-----ccccccc
Confidence 6777664 77888888888899999999865 35788899999984 1 1112222
Q ss_pred C-eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHH
Q psy14500 570 N-TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLN 638 (938)
Q Consensus 570 ~-~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~ 638 (938)
+ +.++++||++.+ ++.+|+.||...|.++-++.+....+++..+.
T Consensus 351 k~VmVLAATN~PWd------------------------iDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~ 396 (491)
T KOG0738|consen 351 KVVMVLAATNFPWD------------------------IDEALRRRLEKRIYIPLPDAEARSALIKILLR 396 (491)
T ss_pred eeEEEEeccCCCcc------------------------hHHHHHHHHhhheeeeCCCHHHHHHHHHHhhc
Confidence 3 556678898776 56788899987888888888888888766554
No 211
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=99.54 E-value=4.3e-14 Score=150.53 Aligned_cols=148 Identities=21% Similarity=0.353 Sum_probs=107.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCcccccccc
Q psy14500 623 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 702 (938)
Q Consensus 623 ~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~G 702 (938)
.++.+++..++.....- +..+..-+.++ .+.+.+||+||++.++.++++.+++ ++.+.++|+|
T Consensus 24 ~i~~~~i~~l~~~~~~i----l~~e~~ll~i~------------~p~~ViGDIHG~~~~L~~l~~~~~~-~~~~~~lfLG 86 (294)
T PTZ00244 24 LIREEDIRAVLTEVREI----FMSQPMLLEIR------------PPVRVCGDTHGQYYDLLRIFEKCGF-PPYSNYLFLG 86 (294)
T ss_pred CCCHHHHHHHHHHHHHH----HHhCCCeEecc------------CCceeeccCCCCHHHHHHHHHHcCC-CCcccEEEee
Confidence 46778888886654433 33333222222 3557799999999999999999887 4567899999
Q ss_pred ccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhCCCCHHHHHHHHhcCCceEEe-
Q psy14500 703 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY- 777 (938)
Q Consensus 703 D~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~- 777 (938)
|++|||+.+.+++.+++.+ +.++++++||||.+.++...+.. +.............+.+|+..||++...
T Consensus 87 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~-----~e~~~~y~~~l~~~~~~~f~~lPlaaii~ 161 (294)
T PTZ00244 87 DYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFF-----DDVKRRYNIKLFKAFTDVFNTMPVCCVIS 161 (294)
T ss_pred eEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChH-----HHHHHHhhHHHHHHHHHHHHhCchheEec
Confidence 9999999999999877653 55789999999998776543311 1111111223357789999999999765
Q ss_pred CCEEEEecccCcCCC
Q psy14500 778 KKYLMIHAGVAKQWT 792 (938)
Q Consensus 778 ~~~~~vHAg~~p~~~ 792 (938)
+++++||||++|.+.
T Consensus 162 ~~il~vHgGi~p~~~ 176 (294)
T PTZ00244 162 EKIICMHGGLSPDLT 176 (294)
T ss_pred CeeEEEcCCCCchhh
Confidence 579999999999764
No 212
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.54 E-value=2.1e-13 Score=153.95 Aligned_cols=221 Identities=21% Similarity=0.290 Sum_probs=146.4
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHh----cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~----~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
..|...|.| +.++|++++++.|...+. ...+++++|+||||||||++++++++.+.... +.......++.++
T Consensus 6 ~~l~~~~~p---~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~~~~v~in 81 (365)
T TIGR02928 6 DLLEPDYVP---DRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAA-EDRDVRVVTVYVN 81 (365)
T ss_pred hhCCCCCCC---CCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHh-hccCCceEEEEEE
Confidence 445667777 478999999999998876 35567899999999999999999998874311 0000014566666
Q ss_pred hhhhhc---------------Ccc--ccc-hHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhh-
Q psy14500 95 IALLLA---------------GTK--YRG-EFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE- 155 (938)
Q Consensus 95 ~~~l~~---------------~~~--~~g-~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~- 155 (938)
+..... +.. ..+ ...+.+..++..+...+.+.||+|||+|.+.... .++...|...
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~~~L~~l~~~~ 156 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----DDLLYQLSRAR 156 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----cHHHHhHhccc
Confidence 633211 100 011 1233345555555545567899999999997321 2333333333
Q ss_pred ----ccCCceEEEEecChhHHHHhhhcCHHHHcccc--eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHh
Q psy14500 156 ----LSRGELHCIGATTLNEYRQYIEKDAAFERRFQ--KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASEL 229 (938)
Q Consensus 156 ----l~~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~ 229 (938)
+...++.+|+++|...+.. .+++.+.+||. .+.|++++.+++..|++...+.. ..+..++++++..++..
T Consensus 157 ~~~~~~~~~v~lI~i~n~~~~~~--~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~ 232 (365)
T TIGR02928 157 SNGDLDNAKVGVIGISNDLKFRE--NLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCAAL 232 (365)
T ss_pred cccCCCCCeEEEEEEECCcchHh--hcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHHHH
Confidence 2235789999999876432 57899999995 49999999999999998776521 12335788888877766
Q ss_pred hhhccccCCCchhhhhHHHHHHHHHH
Q psy14500 230 SYRYISDRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 230 s~~~~~~~~~p~~a~~ll~~a~~~~~ 255 (938)
+... .+.++.+.+++..++..+.
T Consensus 233 ~~~~---~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 233 AAQE---HGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred HHHh---cCCHHHHHHHHHHHHHHHH
Confidence 5421 1334899999998876554
No 213
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.54 E-value=6.5e-14 Score=166.62 Aligned_cols=191 Identities=17% Similarity=0.297 Sum_probs=128.0
Q ss_pred ccccChHHHHH---HHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAIS---AVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~---~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.++||++.+. .+...+.... .++++|+||||||||++|+++|+.+ ..++..+++....- ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~---------~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~~i-~dir 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR---------VGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLAGV-KDLR 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhhhh-HHHH
Confidence 45789999885 4555554322 2479999999999999999999987 45666666542110 0000
Q ss_pred hhcCCCCCCccccccchhHHHH-HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCch
Q psy14500 504 RLIGAPPGYIGYEEGGYLTEIV-RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 582 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~~~l~~~~-~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~ 582 (938)
.. .......+ ......+|||||||.++...|+.|+..+++|. .++|.+|+....
T Consensus 95 ~~------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~-------------IiLI~aTTenp~ 149 (725)
T PRK13341 95 AE------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT-------------ITLIGATTENPY 149 (725)
T ss_pred HH------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce-------------EEEEEecCCChH
Confidence 00 00011111 11345799999999999999999999998643 345555543221
Q ss_pred hhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHH
Q psy14500 583 KIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 662 (938)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 662 (938)
..+.+.+++|+ .++.|+|++.+++..++...+......+...+ +.++++++++|+
T Consensus 150 ----------------------~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~--v~I~deaL~~La 204 (725)
T PRK13341 150 ----------------------FEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRK--VDLEPEAEKHLV 204 (725)
T ss_pred ----------------------hhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcc--cCCCHHHHHHHH
Confidence 12467889998 58999999999999999988876544333333 789999999999
Q ss_pred hhcccccccccccccchHHHHHHH
Q psy14500 663 NIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 663 ~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+.+ -||++...+.|+.++
T Consensus 205 ~~s------~GD~R~lln~Le~a~ 222 (725)
T PRK13341 205 DVA------NGDARSLLNALELAV 222 (725)
T ss_pred HhC------CCCHHHHHHHHHHHH
Confidence 843 245555544577655
No 214
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.54 E-value=1.1e-13 Score=157.43 Aligned_cols=183 Identities=17% Similarity=0.326 Sum_probs=127.5
Q ss_pred ccccChHHHHHH---HHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISA---VSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~---l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.++||++++.. +...+.... .++++|+||||||||++|++|++.+ +.+++.+++.....
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~---------~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~~----- 74 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR---------LSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSGV----- 74 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC---------CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEecccccH-----
Confidence 458899999766 777775332 2379999999999999999999987 56777776643211
Q ss_pred hhcCCCCCCccccccchhHHHH----HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCC
Q psy14500 504 RLIGAPPGYIGYEEGGYLTEIV----RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 579 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~~~l~~~~----~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 579 (938)
...+.+.... ......|||||||++++...++.|+..+++|. .++|.+|+.
T Consensus 75 ------------~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~-------------iilI~att~ 129 (413)
T PRK13342 75 ------------KDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT-------------ITLIGATTE 129 (413)
T ss_pred ------------HHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc-------------EEEEEeCCC
Confidence 0111111111 12356899999999999999999999998743 345555543
Q ss_pred CchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHH
Q psy14500 580 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 659 (938)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 659 (938)
... ..+.+++.+|| .++.|.|++.+++..++...+.... .++ +.+++++++
T Consensus 130 n~~----------------------~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~-----~~~-i~i~~~al~ 180 (413)
T PRK13342 130 NPS----------------------FEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKE-----RGL-VELDDEALD 180 (413)
T ss_pred Chh----------------------hhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhh-----cCC-CCCCHHHHH
Confidence 221 23678999999 6999999999999999887665432 132 478999999
Q ss_pred HHHhhcccccccccccccchHHHHHHH
Q psy14500 660 KISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 660 ~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
.|+..+ -||+....+.++.+.
T Consensus 181 ~l~~~s------~Gd~R~aln~Le~~~ 201 (413)
T PRK13342 181 ALARLA------NGDARRALNLLELAA 201 (413)
T ss_pred HHHHhC------CCCHHHHHHHHHHHH
Confidence 998833 355555544455544
No 215
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=5.7e-14 Score=160.08 Aligned_cols=199 Identities=18% Similarity=0.308 Sum_probs=132.3
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC-----c-eEEeccccccch
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-----S-IIRIDMSEFIEK 499 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~-----~-~~~~~~~~~~~~ 499 (938)
.++|+||+.++..+...++..+. .+.+||+||||+|||++|+++|+.++.... + -.+.+|..+...
T Consensus 16 ~~diiGq~~~v~~L~~~i~~~~i--------~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~ 87 (451)
T PRK06305 16 FSEILGQDAVVAVLKNALRFNRA--------AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSG 87 (451)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcC
Confidence 35789999999999999975442 246999999999999999999999864311 0 011122222111
Q ss_pred hh--hhhhcCCCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEE
Q psy14500 500 HS--ISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTII 573 (938)
Q Consensus 500 ~~--~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 573 (938)
.. ...+-|. +..|.+..+.+...+. .+.+.|+||||+|.++...++.|+++|++ +...+++
T Consensus 88 ~~~d~~~i~g~--~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe-----------p~~~~~~ 154 (451)
T PRK06305 88 TSLDVLEIDGA--SHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE-----------PPQHVKF 154 (451)
T ss_pred CCCceEEeecc--ccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-----------CCCCceE
Confidence 10 0111111 1233333333333332 25678999999999999999999999997 4456778
Q ss_pred EEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEE
Q psy14500 574 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKI 653 (938)
Q Consensus 574 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~ 653 (938)
|++||.. ..+.+.+.+|| .++.|.+++.+++.+.+...+. ..+ +.+
T Consensus 155 Il~t~~~------------------------~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~-------~eg--~~i 200 (451)
T PRK06305 155 FLATTEI------------------------HKIPGTILSRC-QKMHLKRIPEETIIDKLALIAK-------QEG--IET 200 (451)
T ss_pred EEEeCCh------------------------HhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHH-------HcC--CCC
Confidence 8887642 23667899999 5899999999999988554443 344 668
Q ss_pred cHHHHHHHHhhcccccccccccccchHHHHHH
Q psy14500 654 SKAALKKISNIGFDLIYGARDVHGCKKSLSIL 685 (938)
Q Consensus 654 ~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~ 685 (938)
++++++.|+..+ -||+......++++
T Consensus 201 ~~~al~~L~~~s------~gdlr~a~~~Lekl 226 (451)
T PRK06305 201 SREALLPIARAA------QGSLRDAESLYDYV 226 (451)
T ss_pred CHHHHHHHHHHc------CCCHHHHHHHHHHH
Confidence 999999998833 24555443334443
No 216
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=4e-14 Score=157.61 Aligned_cols=171 Identities=17% Similarity=0.299 Sum_probs=113.1
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCC-CceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch-----
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKR-PYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK----- 499 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~-~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~----- 499 (938)
.+.|+||+.+++.+.+++...+.......+ ..+.+||+||||+|||++|+++|+.++..... ...|......
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~--~~~Cg~C~~C~~~~~ 81 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD--EPGCGECRACRTVLA 81 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC--CCCCCCCHHHHHHhc
Confidence 356899999999999999866532222122 23479999999999999999999988543211 0111111000
Q ss_pred --hhhhhhcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEE
Q psy14500 500 --HSISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTII 573 (938)
Q Consensus 500 --~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 573 (938)
+....++......++.+..+.+...+.. +++.|+||||+|++++..+|.||+.||+ +..+++|
T Consensus 82 ~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe-----------p~~~~~f 150 (394)
T PRK07940 82 GTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE-----------PPPRTVW 150 (394)
T ss_pred CCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc-----------CCCCCeE
Confidence 0000011111112233333444444433 3467999999999999999999999997 4456677
Q ss_pred EEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH
Q psy14500 574 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 634 (938)
Q Consensus 574 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~ 634 (938)
|++|+... .+.|.+++|| ..+.|++++.+++.+.+.
T Consensus 151 IL~a~~~~------------------------~llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 151 LLCAPSPE------------------------DVLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EEEECChH------------------------HChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 77776522 3678999999 599999999999877754
No 217
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.54 E-value=2.1e-13 Score=149.80 Aligned_cols=179 Identities=17% Similarity=0.311 Sum_probs=124.9
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++||++.++.+..++...... ..+..+++|+||||||||++|+++|+.+ +.++...+.+.....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~~~~------- 69 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR----QEALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEKP------- 69 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchhcCc-------
Confidence 46889999999999988754321 1223479999999999999999999988 334444333221111
Q ss_pred CCCCCCccccccchhHHHH-HhCCCEEEEEccccccCHHHHHHHHHhhcCCceec--CCC-----ceeecCCeEEEEecC
Q psy14500 507 GAPPGYIGYEEGGYLTEIV-RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD--NRG-----RTINFRNTIIVMTSN 578 (938)
Q Consensus 507 g~~~~~~g~~~~~~l~~~~-~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~--~~g-----~~~~~~~~iiI~ttn 578 (938)
..+...+ ......+|||||++.+++..++.|+.+++++.... ..+ .........+|.+||
T Consensus 70 ------------~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~ 137 (305)
T TIGR00635 70 ------------GDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATT 137 (305)
T ss_pred ------------hhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecC
Confidence 1122222 22345799999999999999999999998765321 111 112334467777777
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHH
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 658 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 658 (938)
... .+.+++.+||..++.|.+++.+++.+++...+.. .+ +.++++++
T Consensus 138 ~~~------------------------~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~-------~~--~~~~~~al 184 (305)
T TIGR00635 138 RAG------------------------MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL-------LN--VEIEPEAA 184 (305)
T ss_pred Ccc------------------------ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH-------hC--CCcCHHHH
Confidence 532 3677899999888999999999999997655432 23 67899999
Q ss_pred HHHHhh
Q psy14500 659 KKISNI 664 (938)
Q Consensus 659 ~~L~~~ 664 (938)
++|++.
T Consensus 185 ~~ia~~ 190 (305)
T TIGR00635 185 LEIARR 190 (305)
T ss_pred HHHHHH
Confidence 999884
No 218
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=5.4e-14 Score=161.09 Aligned_cols=186 Identities=19% Similarity=0.274 Sum_probs=124.2
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC----ceE-Eeccccccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SII-RIDMSEFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~----~~~-~~~~~~~~~~~ 500 (938)
...++||+.+++.+.+++...+. .+.+||+||+|+|||++|+.+|+.++.... |+- +.+|..+....
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i--------~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~ 86 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRV--------SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGS 86 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCC
Confidence 35688999999999999975442 236899999999999999999999853211 110 11121111110
Q ss_pred hhhhhcCCCCCCccccccchhHHHHHhC----CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEe
Q psy14500 501 SISRLIGAPPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 576 (938)
Q Consensus 501 ~~~~l~g~~~~~~g~~~~~~l~~~~~~~----~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 576 (938)
...-+....+...|.+..+.+...+... .+.|++|||++.++...++.|++.|++ +...+++|++
T Consensus 87 ~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe-----------pp~~~v~Il~ 155 (486)
T PRK14953 87 FPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE-----------PPPRTIFILC 155 (486)
T ss_pred CCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCeEEEEE
Confidence 0000000011122333334454444433 467999999999999999999999997 4456777777
Q ss_pred cCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHH
Q psy14500 577 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 656 (938)
Q Consensus 577 tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 656 (938)
|+.. ..+.+.+.+||. .+.|.|++.+++...+...+ +..| +.++++
T Consensus 156 tt~~------------------------~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~-------k~eg--i~id~~ 201 (486)
T PRK14953 156 TTEY------------------------DKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRIC-------NEEK--IEYEEK 201 (486)
T ss_pred ECCH------------------------HHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHH-------HHcC--CCCCHH
Confidence 7631 124567889994 89999999999998855544 3445 678999
Q ss_pred HHHHHHhh
Q psy14500 657 ALKKISNI 664 (938)
Q Consensus 657 ~~~~L~~~ 664 (938)
+++.|+..
T Consensus 202 al~~La~~ 209 (486)
T PRK14953 202 ALDLLAQA 209 (486)
T ss_pred HHHHHHHH
Confidence 99999873
No 219
>KOG0728|consensus
Probab=99.53 E-value=6.1e-14 Score=137.87 Aligned_cols=162 Identities=29% Similarity=0.450 Sum_probs=118.7
Q ss_pred cccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch
Q psy14500 428 RVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 499 (938)
Q Consensus 428 ~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 499 (938)
-+-|.+..++.+.+.+... ..|+..|+ .+||+||||||||.+|+++|+.. ...|+++..+++...
T Consensus 148 MiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK----GvlLygppgtGktLlaraVahht---~c~firvsgselvqk 220 (404)
T KOG0728|consen 148 MIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK----GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQK 220 (404)
T ss_pred HhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc----ceEEecCCCCchhHHHHHHHhhc---ceEEEEechHHHHHH
Confidence 4556777777777777533 13444444 49999999999999999999887 789999999988764
Q ss_pred hhhhhhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCcee
Q psy14500 500 HSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTI 566 (938)
Q Consensus 500 ~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~ 566 (938)
|+|+.. .+.++-..++..++|+|.||||++. .++|.++|.+|..- | |. -
T Consensus 221 ------------~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql---d--gf-e 282 (404)
T KOG0728|consen 221 ------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL---D--GF-E 282 (404)
T ss_pred ------------HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc---c--cc-c
Confidence 555432 3566666788888999999999874 47888888887641 1 11 1
Q ss_pred ecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHHH
Q psy14500 567 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLN 638 (938)
Q Consensus 567 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l~ 638 (938)
...+.-+|++||.- ..++|+++ +|+|..|.|||++++...+|+...-+
T Consensus 283 atknikvimatnri------------------------dild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 283 ATKNIKVIMATNRI------------------------DILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred cccceEEEEecccc------------------------ccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 24567789999951 23556666 79999999999999988888664443
No 220
>PRK06893 DNA replication initiation factor; Validated
Probab=99.53 E-value=1.1e-13 Score=144.31 Aligned_cols=191 Identities=13% Similarity=0.161 Sum_probs=122.4
Q ss_pred hcCCCCCccccHHH--HHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14500 26 RLGKLDPVIGRDDE--IRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 103 (938)
Q Consensus 26 ~~~~~~~lvG~~~~--~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~ 103 (938)
++.+|+++++++.. +..+.........+.++|+||||||||+|++++|+.+... +.....++......
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~~--- 80 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQY--- 80 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhhh---
Confidence 45689999976643 2222222233333457999999999999999999987543 22333344432110
Q ss_pred ccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceE-EEEecChhHHHHhhhcCHHH
Q psy14500 104 YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELH-CIGATTLNEYRQYIEKDAAF 182 (938)
Q Consensus 104 ~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~-vI~~tn~~~~~~~~~ld~al 182 (938)
....++..+.. ..+|+|||++.+.+.... ...+.+.+....+.+..+ ++++++.+.. .....+.+
T Consensus 81 -------~~~~~~~~~~~---~dlLilDDi~~~~~~~~~--~~~l~~l~n~~~~~~~~illits~~~p~~--l~~~~~~L 146 (229)
T PRK06893 81 -------FSPAVLENLEQ---QDLVCLDDLQAVIGNEEW--ELAIFDLFNRIKEQGKTLLLISADCSPHA--LSIKLPDL 146 (229)
T ss_pred -------hhHHHHhhccc---CCEEEEeChhhhcCChHH--HHHHHHHHHHHHHcCCcEEEEeCCCChHH--ccccchhH
Confidence 11233333332 339999999988543210 112333444444555544 4444444441 11245899
Q ss_pred Hcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHH
Q psy14500 183 ERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 183 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 250 (938)
.+|+. .+.+++|+.+++..|++..+.. .++.++++++.+++..+.+.. +.+...++..
T Consensus 147 ~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~----~~l~l~~~v~~~L~~~~~~d~------r~l~~~l~~l 207 (229)
T PRK06893 147 ASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ----RGIELSDEVANFLLKRLDRDM------HTLFDALDLL 207 (229)
T ss_pred HHHHhcCCeeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCCH------HHHHHHHHHH
Confidence 99997 5889999999999999877764 478999999999999998877 6666666654
No 221
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.53 E-value=1.8e-14 Score=142.86 Aligned_cols=174 Identities=22% Similarity=0.273 Sum_probs=84.6
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh------
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH------ 500 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~------ 500 (938)
+.|+||+.+++++.-+..-. +++||.||||||||++|++++..+-. +..-..-+.....
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~-----------h~lLl~GppGtGKTmlA~~l~~lLP~----l~~~e~le~~~i~s~~~~~ 67 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG-----------HHLLLIGPPGTGKTMLARRLPSLLPP----LTEEEALEVSKIYSVAGLG 67 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC-------------EEEES-CCCTHHHHHHHHHHCS------CCEECCESS--S-TT---S
T ss_pred hhhcCcHHHHHHHHHHHcCC-----------CCeEEECCCCCCHHHHHHHHHHhCCC----CchHHHhhhccccccccCC
Confidence 57999999999999888732 38999999999999999999988721 1111111111111
Q ss_pred ------------------hhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC
Q psy14500 501 ------------------SISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR 562 (938)
Q Consensus 501 ------------------~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~ 562 (938)
+...++|. .. ....+.+..+.+||||+||+..+++.+++.|++.|++|.++...
T Consensus 68 ~~~~~~~~~Pfr~phhs~s~~~liGg-------g~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R 139 (206)
T PF01078_consen 68 PDEGLIRQRPFRAPHHSASEAALIGG-------GR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISR 139 (206)
T ss_dssp ---EEEE---EEEE-TT--HHHHHEE-------GG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEE
T ss_pred CCCceecCCCcccCCCCcCHHHHhCC-------Cc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEE
Confidence 11112221 00 11224566788999999999999999999999999999987543
Q ss_pred -Cc-eeecCCeEEEEecCCCchhh----hhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHH
Q psy14500 563 -GR-TINFRNTIIVMTSNLGSDKI----KEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKN 628 (938)
Q Consensus 563 -g~-~~~~~~~iiI~ttn~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~ 628 (938)
|. .....++++|+|+|.-+--. ...|.++..++.++ ..+++.++++|||..+..++++.++
T Consensus 140 ~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y-----~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 140 AGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRY-----QSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp TTEEEEEB--EEEEEEE-S-----------------------------------------------------
T ss_pred CCceEEEecccEEEEEeccccccccccccccccccccccccc-----cccccccccccccccccccccccCC
Confidence 33 34457899999999733211 12233344443333 5668889999999999988887653
No 222
>KOG0727|consensus
Probab=99.53 E-value=5.8e-14 Score=138.16 Aligned_cols=156 Identities=25% Similarity=0.451 Sum_probs=111.5
Q ss_pred cccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch
Q psy14500 428 RVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 499 (938)
Q Consensus 428 ~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 499 (938)
++-|.+-.+..+.+++... ..|+..| ..+|++||||||||+||+++|+.. ...|+++..++|..+
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidpp----rgvllygppg~gktml~kava~~t---~a~firvvgsefvqk 228 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPP----RGVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQK 228 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCC----cceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHHHH
Confidence 4555555555565555322 2344333 259999999999999999999876 779999999998865
Q ss_pred hhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEcccccc-----------CHHHHHHHHHhhcCCceecCCCcee
Q psy14500 500 HSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRTI 566 (938)
Q Consensus 500 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~ 566 (938)
|.|+... +.++...++..++|+||||||.+ +.++|..|+.+|.. .++..
T Consensus 229 ------------ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnq---mdgfd--- 290 (408)
T KOG0727|consen 229 ------------YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQ---MDGFD--- 290 (408)
T ss_pred ------------HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHh---ccCcC---
Confidence 5554432 55666778888899999999864 35788888888764 11111
Q ss_pred ecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHH
Q psy14500 567 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSI 632 (938)
Q Consensus 567 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i 632 (938)
...++-+|++||.. ..++|.++ +|+|..|.|+-+++.+.+-+
T Consensus 291 q~~nvkvimatnra------------------------dtldpallrpgrldrkiefplpdrrqkrlv 334 (408)
T KOG0727|consen 291 QTTNVKVIMATNRA------------------------DTLDPALLRPGRLDRKIEFPLPDRRQKRLV 334 (408)
T ss_pred cccceEEEEecCcc------------------------cccCHhhcCCccccccccCCCCchhhhhhh
Confidence 24677899999963 34677777 69999999998887765555
No 223
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.52 E-value=3.1e-13 Score=148.57 Aligned_cols=201 Identities=17% Similarity=0.171 Sum_probs=138.2
Q ss_pred HhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCC----CCCCcC----CC-------
Q psy14500 25 ARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGE----VPNSLL----SK------- 88 (938)
Q Consensus 25 ~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~----~p~~~~----~~------- 88 (938)
..|..+++++|++++.+.+...+.+++.+| +||+||+|+|||++|+.+|+.+.+.. .|.... .+
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 589999999999999999999998887776 89999999999999999999987632 121111 11
Q ss_pred -----eEEEEehhhhhcCccc-cchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC
Q psy14500 89 -----KILLLDIALLLAGTKY-RGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG 159 (938)
Q Consensus 89 -----~~~~~~~~~l~~~~~~-~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~ 159 (938)
.++.+.......+.+. ..-....++.+...+. ..++..|+||||+|.|. .+.+|.|+..+|..
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~--------~~aanaLLk~LEEp 168 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMN--------RNAANAILKTLEEP 168 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcC--------HHHHHHHHHHHhcC
Confidence 1111111000000000 0001123444433333 23456799999999994 35678888888763
Q ss_pred --ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccC
Q psy14500 160 --ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 237 (938)
Q Consensus 160 --~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~ 237 (938)
...+|.+|+.+. .+.+++++||..+.|++|+.++...++..... ...++++++..++.+++|..
T Consensus 169 p~~~~fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~------~~~~~~~~~~~i~~~s~G~p--- 234 (351)
T PRK09112 169 PARALFILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSHLGS------SQGSDGEITEALLQRSKGSV--- 234 (351)
T ss_pred CCCceEEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHHhhc------ccCCCHHHHHHHHHHcCCCH---
Confidence 466666666666 67899999999999999999999999986321 11277888888888887655
Q ss_pred CCchhhhhHHHHH
Q psy14500 238 FMPDKAIDLIDEA 250 (938)
Q Consensus 238 ~~p~~a~~ll~~a 250 (938)
+.++.++...
T Consensus 235 ---r~Al~ll~~~ 244 (351)
T PRK09112 235 ---RKALLLLNYG 244 (351)
T ss_pred ---HHHHHHHhcC
Confidence 8888877554
No 224
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.52 E-value=1.2e-13 Score=166.73 Aligned_cols=200 Identities=19% Similarity=0.245 Sum_probs=135.4
Q ss_pred CCC-CccccHHHHHHHHHHHhc------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14500 29 KLD-PVIGRDDEIRRAIQVLQR------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 101 (938)
Q Consensus 29 ~~~-~lvG~~~~~~~l~~~l~~------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~ 101 (938)
.++ +.+|.+++.++++.++.. .....++|+||||||||++++.+|+.+ +.+++.++++.....
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~ 388 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDE 388 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCH
Confidence 344 489999999999987762 344568999999999999999999988 667777776543211
Q ss_pred -------ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC----------------
Q psy14500 102 -------TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---------------- 158 (938)
Q Consensus 102 -------~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---------------- 158 (938)
..|.|.....+...+..+.. ..| |++|||+|.+.++.. .+..++|+++++.
T Consensus 389 ~~i~g~~~~~~g~~~G~~~~~l~~~~~-~~~-villDEidk~~~~~~----g~~~~aLlevld~~~~~~~~d~~~~~~~d 462 (784)
T PRK10787 389 AEIRGHRRTYIGSMPGKLIQKMAKVGV-KNP-LFLLDEIDKMSSDMR----GDPASALLEVLDPEQNVAFSDHYLEVDYD 462 (784)
T ss_pred HHhccchhccCCCCCcHHHHHHHhcCC-CCC-EEEEEChhhcccccC----CCHHHHHHHHhccccEEEEeccccccccc
Confidence 12344443344444444332 223 899999999976431 2345567777653
Q ss_pred -CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhh-hhhc-----ccCCCCCHHHHHHHHHhhh
Q psy14500 159 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQK-KYEV-----HHGVEITDPAIVAASELSY 231 (938)
Q Consensus 159 -~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~-~~~~-----~~~~~i~~~~l~~~~~~s~ 231 (938)
+++.+|+|+|.. .++++|++||..|.|..++.++...|++.++. +... ...+.++++++..++....
T Consensus 463 ls~v~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt 536 (784)
T PRK10787 463 LSDVMFVATSNSM------NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT 536 (784)
T ss_pred CCceEEEEcCCCC------CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC
Confidence 578899988754 58999999999999999999999999977664 2111 1236799999999987433
Q ss_pred hccccCCCchhhhhHHHHH
Q psy14500 232 RYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 232 ~~~~~~~~p~~a~~ll~~a 250 (938)
+..+.|.+-+....++...
T Consensus 537 ~e~GaR~LeR~I~~i~r~~ 555 (784)
T PRK10787 537 REAGVRSLEREISKLCRKA 555 (784)
T ss_pred cccCCcHHHHHHHHHHHHH
Confidence 3333333333333333333
No 225
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.7e-13 Score=159.27 Aligned_cols=184 Identities=20% Similarity=0.322 Sum_probs=123.6
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEeccc---cccchh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMS---EFIEKH 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~---~~~~~~ 500 (938)
.+.|+||+.+++.+...++..+. .+.+||+||+|+|||++|+++|+.++....+ ..+..|. .+....
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i--------~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~ 86 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKI--------ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDN 86 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCC
Confidence 45789999999999999985442 2469999999999999999999999643211 0111111 111100
Q ss_pred hh--hhhcCCCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 501 SI--SRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 501 ~~--~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
.. ..+-|.. ..+.+..+.+...+. .+.+.|++|||++.++...+|.|++.|++ +...++||
T Consensus 87 ~~dv~~idgas--~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-----------pp~~~vfI 153 (563)
T PRK06647 87 SLDVIEIDGAS--NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-----------PPPYIVFI 153 (563)
T ss_pred CCCeEEecCcc--cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-----------CCCCEEEE
Confidence 00 0000110 111122222322222 34568999999999999999999999997 55678888
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
++|+.. ..+.+.+.+||. .+.|.+++.+++.+.+...+ ...+ +.++
T Consensus 154 ~~tte~------------------------~kL~~tI~SRc~-~~~f~~l~~~el~~~L~~i~-------~~eg--i~id 199 (563)
T PRK06647 154 FATTEV------------------------HKLPATIKSRCQ-HFNFRLLSLEKIYNMLKKVC-------LEDQ--IKYE 199 (563)
T ss_pred EecCCh------------------------HHhHHHHHHhce-EEEecCCCHHHHHHHHHHHH-------HHcC--CCCC
Confidence 888642 235678999994 89999999999888755433 3345 6689
Q ss_pred HHHHHHHHhh
Q psy14500 655 KAALKKISNI 664 (938)
Q Consensus 655 ~~~~~~L~~~ 664 (938)
++++.+|+..
T Consensus 200 ~eAl~lLa~~ 209 (563)
T PRK06647 200 DEALKWIAYK 209 (563)
T ss_pred HHHHHHHHHH
Confidence 9999999884
No 226
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.52 E-value=4e-13 Score=143.12 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=106.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCcccc--------------------cc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYE--------------------EG 518 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~--------------------~~ 518 (938)
++||+||||||||++|+++|+.+ +.+++.++|..-.. ...++|...++.... ..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~---~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELT---TSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCC---HHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecC
Confidence 79999999999999999999977 78999999876332 234444432221110 01
Q ss_pred chhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCC----cee-ecCCeEEEEecCCCchhhhhhhcchHH
Q psy14500 519 GYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRG----RTI-NFRNTIIVMTSNLGSDKIKEMEKGDKE 593 (938)
Q Consensus 519 ~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g----~~~-~~~~~iiI~ttn~~~~~~~~~~~~~~~ 593 (938)
+.+..+.+ .+++|+||||+++++++++.|+.+|++|.++..++ ..+ ...++.+|+|+|.....-
T Consensus 97 g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g--------- 165 (262)
T TIGR02640 97 NRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG--------- 165 (262)
T ss_pred chHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc---------
Confidence 22222222 34699999999999999999999999998875432 222 335778999999743211
Q ss_pred HHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHH
Q psy14500 594 IIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 636 (938)
Q Consensus 594 ~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~ 636 (938)
...++++|++|| ..+.+..++.++..+|+...
T Consensus 166 ----------~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 166 ----------VHETQDALLDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred ----------eecccHHHHhhc-EEEECCCCCHHHHHHHHHHh
Confidence 123578899999 68888889998888887653
No 227
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.1e-13 Score=161.74 Aligned_cols=200 Identities=19% Similarity=0.278 Sum_probs=130.7
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC---c-------eEEecccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE---S-------IIRIDMSE 495 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~---~-------~~~~~~~~ 495 (938)
.+.++||+.+++.+.+++...+.. +.+||+||+|||||++|+++|+.++.... + --+..|..
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~--------ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~s 86 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVG--------HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECES 86 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCC--------eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHH
Confidence 457889999999999998755432 36999999999999999999999954210 0 00111111
Q ss_pred ---ccchhh--hhhhcCCCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCcee
Q psy14500 496 ---FIEKHS--ISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 566 (938)
Q Consensus 496 ---~~~~~~--~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~ 566 (938)
+..... +..+-| .+..+.+..+.+.+.+. .+.+.|+||||+|.++...++.|++.||+
T Consensus 87 C~~~~~g~~~n~~~~d~--~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe----------- 153 (620)
T PRK14954 87 CRDFDAGTSLNISEFDA--ASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE----------- 153 (620)
T ss_pred HHHHhccCCCCeEEecc--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-----------
Confidence 100000 000000 01122222333333332 24468999999999999999999999997
Q ss_pred ecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHc
Q psy14500 567 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 646 (938)
Q Consensus 567 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~ 646 (938)
+...++||++|+.. ..+.+.+.+|+ .++.|.+++.+++...+...+. .
T Consensus 154 Pp~~tv~IL~t~~~------------------------~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~-------~ 201 (620)
T PRK14954 154 PPPHAIFIFATTEL------------------------HKIPATIASRC-QRFNFKRIPLDEIQSQLQMICR-------A 201 (620)
T ss_pred CCCCeEEEEEeCCh------------------------hhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHH-------H
Confidence 55667777777531 23567899999 5999999999998888544443 3
Q ss_pred cCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 647 MNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 647 ~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
.+ +.++++++++|+..+ -||+......++++.
T Consensus 202 eg--i~I~~eal~~La~~s------~Gdlr~al~eLeKL~ 233 (620)
T PRK14954 202 EG--IQIDADALQLIARKA------QGSMRDAQSILDQVI 233 (620)
T ss_pred cC--CCCCHHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 34 668999999998843 244444444455554
No 228
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=99.51 E-value=4.5e-14 Score=153.36 Aligned_cols=122 Identities=20% Similarity=0.308 Sum_probs=94.7
Q ss_pred cccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhc
Q psy14500 667 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLIN 742 (938)
Q Consensus 667 ~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~ 742 (938)
.+.+.+|||||++.++.++++..++.+....++|+||++|||+.+++|+.+++.+ +.++++++||||.+++++..+
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~G 145 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYG 145 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcc
Confidence 3568899999999999999998887555567999999999999999999998876 346889999999998887654
Q ss_pred cccCCccccHHHhhC--CCCHHHHHHHHhcCCceEEeC-CEEEEecccCcCCC
Q psy14500 743 INKKSKLDTFDDILD--APDKKKLVSWLRTQPLAIYYK-KYLMIHAGVAKQWT 792 (938)
Q Consensus 743 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~lp~~~~~~-~~~~vHAg~~p~~~ 792 (938)
... +....+.. ....+.+..|++.||++...+ ++++||||++|++.
T Consensus 146 f~~----E~~~~y~~~~~~l~~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~ 194 (377)
T cd07418 146 FEQ----EVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPS 194 (377)
T ss_pred cch----hhhhhcCchHHHHHHHHHHHHHhCCcEEEECCCEEEECCCcCCccc
Confidence 321 11111111 112467899999999987665 69999999977654
No 229
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.51 E-value=4.6e-13 Score=147.95 Aligned_cols=187 Identities=14% Similarity=0.199 Sum_probs=133.5
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
++++||+++.+.+...++... ..+.+||+||||+|||++|+++++.+ +.++..+++++ .....+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~--------~~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~-~~~~~i~--- 85 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR--------IPNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD-CRIDFVR--- 85 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--------CCeEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc-ccHHHHH---
Confidence 467899999999998887432 12356679999999999999999987 55677777765 1110000
Q ss_pred CCCCCCccccccchhHHHHH----hCCCEEEEEcccccc-CHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCc
Q psy14500 507 GAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKA-NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGS 581 (938)
Q Consensus 507 g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~-~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~ 581 (938)
..+..... ...+.||+|||+|.+ ....++.|..++++ ...++.||+|||...
T Consensus 86 ------------~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-----------~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 86 ------------NRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-----------YSKNCSFIITANNKN 142 (316)
T ss_pred ------------HHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh-----------cCCCceEEEEcCChh
Confidence 01111111 135689999999999 67788888888885 335678899998522
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHH
Q psy14500 582 DKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKI 661 (938)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L 661 (938)
.+.+++.+|| ..+.|++++.++...++...+..+...+...+ +.++++++..+
T Consensus 143 ------------------------~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~--~~i~~~al~~l 195 (316)
T PHA02544 143 ------------------------GIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEG--VEVDMKVLAAL 195 (316)
T ss_pred ------------------------hchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHH
Confidence 3668899999 48999999999999998887777776666666 66799999999
Q ss_pred HhhcccccccccccccchHHHHH
Q psy14500 662 SNIGFDLIYGARDVHGCKKSLSI 684 (938)
Q Consensus 662 ~~~~~~~~~~~~dl~~~~~~l~~ 684 (938)
++..+ +|++.....++.
T Consensus 196 ~~~~~------~d~r~~l~~l~~ 212 (316)
T PHA02544 196 VKKNF------PDFRRTINELQR 212 (316)
T ss_pred HHhcC------CCHHHHHHHHHH
Confidence 88443 455554333443
No 230
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=99.51 E-value=2.1e-13 Score=145.67 Aligned_cols=148 Identities=21% Similarity=0.321 Sum_probs=107.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCcccccccc
Q psy14500 623 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 702 (938)
Q Consensus 623 ~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~G 702 (938)
.++.+++.+++.... +.++.+..-+.++ .+.+.+|||||++.++.+++...++ ++.+.++|+|
T Consensus 22 ~~~~~~i~~l~~~~~----~il~~ep~~l~i~------------~~i~viGDIHG~~~~L~~l~~~~~~-~~~~~~lfLG 84 (293)
T cd07414 22 QLTEAEIRGLCLKSR----EIFLSQPILLELE------------APLKICGDIHGQYYDLLRLFEYGGF-PPESNYLFLG 84 (293)
T ss_pred CCCHHHHHHHHHHHH----HHHHhCCCeEecC------------CceEEEEecCCCHHHHHHHHHhcCC-CCcceEEEEe
Confidence 567888888865544 3333333222222 2457799999999999999998887 4668999999
Q ss_pred ccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhCCCCHHHHHHHHhcCCceEE-e
Q psy14500 703 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-Y 777 (938)
Q Consensus 703 D~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~-~ 777 (938)
|++|||+.+++++.+++.+ +.++++++||||.+.+....+.... ....+ .......+..|+..||++.. .
T Consensus 85 DyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e-~~~~y----~~~l~~~~~~~f~~lPlaa~i~ 159 (293)
T cd07414 85 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDE-CKRRY----NIKLWKTFTDCFNCLPVAAIID 159 (293)
T ss_pred eEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhH-HHHhh----hHHHHHHHHHHHHHhHHHHhhC
Confidence 9999999999999998876 3478999999999888766543210 00111 11123667899999999954 5
Q ss_pred CCEEEEecccCcCCC
Q psy14500 778 KKYLMIHAGVAKQWT 792 (938)
Q Consensus 778 ~~~~~vHAg~~p~~~ 792 (938)
+++++||||++|...
T Consensus 160 ~~i~cvHgGi~p~~~ 174 (293)
T cd07414 160 EKIFCMHGGLSPDLQ 174 (293)
T ss_pred CcEEEEccCCCcccC
Confidence 679999999999753
No 231
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=3e-13 Score=149.51 Aligned_cols=197 Identities=15% Similarity=0.194 Sum_probs=136.8
Q ss_pred HhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC---------cCCC------
Q psy14500 25 ARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS---------LLSK------ 88 (938)
Q Consensus 25 ~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~---------~~~~------ 88 (938)
.+|.++++|||++++.+.|...+.+++.+| +||+||+|+||+++|.++|+.+.+...... +..+
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 489999999999999999999999888787 789999999999999999999976431100 0001
Q ss_pred ---------eEEEEehhhhhcCccccch-HHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhh
Q psy14500 89 ---------KILLLDIALLLAGTKYRGE-FEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE 155 (938)
Q Consensus 89 ---------~~~~~~~~~l~~~~~~~g~-~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~ 155 (938)
.++.+.......+.+.... ....++.+...+. ..+++.|++|||+|.|. ...+|.|+..
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~--------~~aanaLLK~ 164 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN--------ANAANALLKV 164 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------HHHHHHHHHH
Confidence 1222221100000000000 1223555555443 23557899999999993 4677889999
Q ss_pred ccC--CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhc
Q psy14500 156 LSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 233 (938)
Q Consensus 156 l~~--~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 233 (938)
++. +..++|.+|+.++ .+.+++++||..+.|++|+.++...++.... ...++..+..++.+++|.
T Consensus 165 LEepp~~~~~IL~t~~~~-----~llpti~SRc~~i~l~~l~~~~i~~~L~~~~--------~~~~~~~~~~l~~~s~Gs 231 (365)
T PRK07471 165 LEEPPARSLFLLVSHAPA-----RLLPTIRSRCRKLRLRPLAPEDVIDALAAAG--------PDLPDDPRAALAALAEGS 231 (365)
T ss_pred HhcCCCCeEEEEEECCch-----hchHHhhccceEEECCCCCHHHHHHHHHHhc--------ccCCHHHHHHHHHHcCCC
Confidence 986 3677888888877 6789999999999999999999998886532 234455556777787765
Q ss_pred cccCCCchhhhhHHH
Q psy14500 234 ISDRFMPDKAIDLID 248 (938)
Q Consensus 234 ~~~~~~p~~a~~ll~ 248 (938)
. +.+..+++
T Consensus 232 p------~~Al~ll~ 240 (365)
T PRK07471 232 V------GRALRLAG 240 (365)
T ss_pred H------HHHHHHhc
Confidence 5 66666654
No 232
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=99.51 E-value=5.1e-14 Score=151.52 Aligned_cols=117 Identities=20% Similarity=0.297 Sum_probs=92.0
Q ss_pred ccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhcc
Q psy14500 668 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLINI 743 (938)
Q Consensus 668 ~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~ 743 (938)
..+.+||||||+..+.++++..++.+..+.++|+||++|||+.+++|+.+++.+ +.++++++||||.+.+++..+.
T Consensus 61 ~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~gf 140 (316)
T cd07417 61 KITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYGF 140 (316)
T ss_pred eeEEeecccCCHHHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhhh
Confidence 357899999999999999999998666678999999999999999999999876 4568899999999888766543
Q ss_pred ccCCccccHHHhhCCCCHHHHHHHHhcCCceEEe-CCEEEEecccCc
Q psy14500 744 NKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY-KKYLMIHAGVAK 789 (938)
Q Consensus 744 ~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~-~~~~~vHAg~~p 789 (938)
.... ...+ .......+..|+..||++... +++++||||+++
T Consensus 141 ~~e~-~~k~----~~~l~~~~~~~f~~LPlaaii~~~~~~vHgGi~~ 182 (316)
T cd07417 141 EGEV-KAKY----NEQMFDLFSEVFNWLPLAHLINGKVLVVHGGLFS 182 (316)
T ss_pred cchh-hhcc----cHHHHHHHHHHHHhchHhheeCCeEEEEcccccc
Confidence 2110 0111 112235678899999998765 479999999954
No 233
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.51 E-value=8.8e-14 Score=157.16 Aligned_cols=185 Identities=17% Similarity=0.228 Sum_probs=121.9
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc----eE---Eeccccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES----II---RIDMSEFIE 498 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~----~~---~~~~~~~~~ 498 (938)
.+.|+||+.+++.+..++...+. .+.+||+||||||||++|+++|+.++..... +. .--|.....
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~--------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~ 86 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRV--------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECES 86 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCc--------ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHH
Confidence 35789999999999998875442 2369999999999999999999999543100 00 001111100
Q ss_pred hhhhhhhcCCCCC--------CccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCcee
Q psy14500 499 KHSISRLIGAPPG--------YIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 566 (938)
Q Consensus 499 ~~~~~~l~g~~~~--------~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~ 566 (938)
... -.-|..+. ..|.+..+.+...+. .+++.|+||||++.++...++.|++.+++
T Consensus 87 c~~--~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe----------- 153 (397)
T PRK14955 87 CRD--FDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE----------- 153 (397)
T ss_pred HHH--HhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-----------
Confidence 000 00011111 112222223333332 23467999999999999999999999996
Q ss_pred ecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHc
Q psy14500 567 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 646 (938)
Q Consensus 567 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~ 646 (938)
+...++||++++.. ..+.+.+.+|+ .++.|.|++.+++.+.+...+. .
T Consensus 154 p~~~t~~Il~t~~~------------------------~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~-------~ 201 (397)
T PRK14955 154 PPPHAIFIFATTEL------------------------HKIPATIASRC-QRFNFKRIPLEEIQQQLQGICE-------A 201 (397)
T ss_pred CCCCeEEEEEeCCh------------------------HHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHH-------H
Confidence 44566777777531 23556788999 4899999999999888655443 3
Q ss_pred cCCeEEEcHHHHHHHHhhc
Q psy14500 647 MNMDLKISKAALKKISNIG 665 (938)
Q Consensus 647 ~~~~l~~~~~~~~~L~~~~ 665 (938)
.+ +.+++++++.|+..+
T Consensus 202 ~g--~~i~~~al~~l~~~s 218 (397)
T PRK14955 202 EG--ISVDADALQLIGRKA 218 (397)
T ss_pred cC--CCCCHHHHHHHHHHc
Confidence 34 779999999998843
No 234
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=99.50 E-value=8.8e-14 Score=150.44 Aligned_cols=151 Identities=21% Similarity=0.360 Sum_probs=105.5
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCC-------cc
Q psy14500 624 LNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSP-------EA 696 (938)
Q Consensus 624 l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~-------~~ 696 (938)
++.+++.+++..... .++.+..-+.++ .+.+.+||||||++++.++++.+++.+. ..
T Consensus 21 ~~~~~i~~l~~~~~~----il~~e~~~~~i~------------~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~ 84 (311)
T cd07419 21 FNWNEILELCDAAED----IFKQEPMVLRLR------------APIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYI 84 (311)
T ss_pred CCHHHHHHHHHHHHH----HHHhCCCeEeeC------------CCEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCc
Confidence 567788887655443 333333222332 2457789999999999999988876432 24
Q ss_pred ccccccccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhC--CCCHHHHHHHHhc
Q psy14500 697 NFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILD--APDKKKLVSWLRT 770 (938)
Q Consensus 697 ~li~~GD~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 770 (938)
.++|+||++||||.+++|+.+++.+ +.++++|+||||.+++++..+.... ....+..... ......+..|+..
T Consensus 85 ~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e-~~~~~~~~~~~~~~l~~~~~~~f~~ 163 (311)
T cd07419 85 DYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREE-CKERLGEDPNDGDSVWRRINRLFEW 163 (311)
T ss_pred eEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHH-HHHhcCccchhhHHHHHHHHHHHHh
Confidence 7999999999999999999999877 4478899999999998876543211 0001100000 0123567889999
Q ss_pred CCceEE-eCCEEEEecccCcCC
Q psy14500 771 QPLAIY-YKKYLMIHAGVAKQW 791 (938)
Q Consensus 771 lp~~~~-~~~~~~vHAg~~p~~ 791 (938)
||++.. .+++++||||++|..
T Consensus 164 LPl~avi~~~~l~vHgGi~p~~ 185 (311)
T cd07419 164 LPLAAIIEDKILCMHGGIGRSI 185 (311)
T ss_pred CchhheecccEEEEccCCCCCC
Confidence 999854 457999999999964
No 235
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.50 E-value=2.9e-13 Score=143.65 Aligned_cols=140 Identities=14% Similarity=0.171 Sum_probs=99.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCcccccc--chhHHHHH-----hCCC
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVR-----RKPY 530 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~-----~~~~ 530 (938)
..++|+||||||||.+|+++|+.+ +.+++.++.+++.+. |+|+.+. +.++...+ ...+
T Consensus 149 lgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~sk------------~vGEsEk~IR~~F~~A~~~a~~~~aP 213 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELESE------------NAGEPGKLIRQRYREAADIIKKKGKM 213 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhcC------------cCCcHHHHHHHHHHHHHHHhhccCCC
Confidence 378999999999999999999999 889999999887653 6776554 33333332 2357
Q ss_pred EEEEEccccccCH-----------HH-HHHHHHhhcCCceecCCC---ceeecCCeEEEEecCCCchhhhhhhcchHHHH
Q psy14500 531 SLILLDEIEKANS-----------DV-FNILLQILDDGRLTDNRG---RTINFRNTIIVMTSNLGSDKIKEMEKGDKEII 595 (938)
Q Consensus 531 ~vl~lDEid~~~~-----------~~-~~~Ll~~le~g~~~~~~g---~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~ 595 (938)
|||||||||.+.+ .+ ..+|+..+|+-......| ..-...++.||+|||.+..
T Consensus 214 cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~------------- 280 (413)
T PLN00020 214 SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST------------- 280 (413)
T ss_pred eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc-------------
Confidence 9999999997643 22 367888887411110111 0113456889999997553
Q ss_pred HHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHH
Q psy14500 596 KLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLN 638 (938)
Q Consensus 596 ~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~ 638 (938)
++|+|+. |||..+ ..++.++..+|++..++
T Consensus 281 -----------LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r 312 (413)
T PLN00020 281 -----------LYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFR 312 (413)
T ss_pred -----------CCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhc
Confidence 7788887 999754 47899999999776554
No 236
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.50 E-value=8e-13 Score=133.63 Aligned_cols=194 Identities=23% Similarity=0.324 Sum_probs=137.5
Q ss_pred hcCCCCCccccHHHHHHHHH----HHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQ----VLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 101 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~----~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~ 101 (938)
.+-.+++++|-+...+.|++ ++...+.+|+||+|++|||||++++++..++... +.+++++....+.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~-------GLRlIev~k~~L~-- 92 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ-------GLRLIEVSKEDLG-- 92 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc-------CceEEEECHHHhc--
Confidence 45578899998887766665 6677888999999999999999999999988543 6889988877665
Q ss_pred ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC------CceEEEEecChhHHHHh
Q psy14500 102 TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR------GELHCIGATTLNEYRQY 175 (938)
Q Consensus 102 ~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~------~~i~vI~~tn~~~~~~~ 175 (938)
.+..++..+.....+.|||+|++. +... ......|+.+|+. .++++.+|+|+-..-..
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--Fe~~-----d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--FEEG-----DTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--CCCC-----cHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 377888888877778999999865 3332 3345678888864 37888888886432110
Q ss_pred ------------------hhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHH-HHHHhhhhccc
Q psy14500 176 ------------------IEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIV-AASELSYRYIS 235 (938)
Q Consensus 176 ------------------~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~-~~~~~s~~~~~ 235 (938)
..-.-+|.+||.. |.|.+|+.++-.+|+++++++ .++.++++.+. .+...+.. .
T Consensus 157 ~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~----~g~~~~~e~l~~~Al~wa~~--r 230 (249)
T PF05673_consen 157 SFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAER----YGLELDEEELRQEALQWALR--R 230 (249)
T ss_pred hhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHH--c
Confidence 0011356779996 999999999999999999886 47777753332 22222211 1
Q ss_pred cCCCchhhhhHHHHH
Q psy14500 236 DRFMPDKAIDLIDEA 250 (938)
Q Consensus 236 ~~~~p~~a~~ll~~a 250 (938)
....++.|.++++..
T Consensus 231 g~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 231 GGRSGRTARQFIDDL 245 (249)
T ss_pred CCCCHHHHHHHHHHH
Confidence 223456666666543
No 237
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.49 E-value=2.4e-13 Score=152.87 Aligned_cols=167 Identities=27% Similarity=0.371 Sum_probs=114.8
Q ss_pred hccccChHHHHHHHHHHHHhhhcCC----CCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGL----SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS 501 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~----~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~ 501 (938)
.+.+.|.+..++.+...+....... ...-.+...+||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~l~~~-- 204 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVQK-- 204 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHHHhHh--
Confidence 3468899999998888774321100 0001222369999999999999999999988 678888888776532
Q ss_pred hhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEcccccc-----------CHHHHHHHHHhhcCCceecCCCceeec
Q psy14500 502 ISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRTINF 568 (938)
Q Consensus 502 ~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~ 568 (938)
|.|.... +.++...+...++||||||+|.+ ++.++..|++++..-.-. ...
T Consensus 205 ----------~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~------~~~ 268 (389)
T PRK03992 205 ----------FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF------DPR 268 (389)
T ss_pred ----------hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc------CCC
Confidence 3333221 33444455666799999999987 356666777766431100 122
Q ss_pred CCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 569 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 569 ~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
.++++|+|||... .+++.++ +|||..|.|++++.++..+|+...+
T Consensus 269 ~~v~VI~aTn~~~------------------------~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~ 315 (389)
T PRK03992 269 GNVKIIAATNRID------------------------ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHT 315 (389)
T ss_pred CCEEEEEecCChh------------------------hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHh
Confidence 4678999999632 2567777 4999999999999999999976544
No 238
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=99.49 E-value=3.1e-13 Score=143.68 Aligned_cols=149 Identities=19% Similarity=0.305 Sum_probs=106.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCcccccccc
Q psy14500 623 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 702 (938)
Q Consensus 623 ~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~G 702 (938)
.++.+++.+++..... .++.+..-+.++ .+-+.+||+||++.++.+++...++ ++.+.++|+|
T Consensus 14 ~l~~~~~~~l~~~~~~----il~~e~~~~~i~------------~~i~vvGDIHG~~~dL~~ll~~~~~-~~~~~~lfLG 76 (285)
T cd07415 14 LLPESEVKSLCEKAKE----ILVKESNVQRVR------------SPVTVCGDIHGQFYDLLELFRVGGD-PPDTNYLFLG 76 (285)
T ss_pred CCCHHHHHHHHHHHHH----HHHhCCCEEecC------------CCEEEEEeCCCCHHHHHHHHHHcCC-CCCCeEEEEe
Confidence 4667788877655443 333332222222 3457799999999999999988886 4668999999
Q ss_pred ccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhCCCCHHHHHHHHhcCCceE-Ee
Q psy14500 703 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAI-YY 777 (938)
Q Consensus 703 D~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~-~~ 777 (938)
|++|||+.+++++.+++.+ +.+++.++||||...+....+.. .+....+........+..|+..||++. ..
T Consensus 77 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~----~e~~~~y~~~~l~~~~~~~f~~lPlaaii~ 152 (285)
T cd07415 77 DYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFY----DECLRKYGNANVWKYCTDLFDYLPLAALID 152 (285)
T ss_pred EECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchh----HHHHHhcCchHHHHHHHHHHHHhHHHhEeC
Confidence 9999999999999998876 44789999999988776544321 111112211123467889999999985 55
Q ss_pred CCEEEEecccCcCCC
Q psy14500 778 KKYLMIHAGVAKQWT 792 (938)
Q Consensus 778 ~~~~~vHAg~~p~~~ 792 (938)
+++++||||++|...
T Consensus 153 ~~i~cvHgGi~p~~~ 167 (285)
T cd07415 153 NQIFCVHGGLSPSID 167 (285)
T ss_pred CeEEEEcCCCCCCcc
Confidence 679999999999754
No 239
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=99.49 E-value=1.1e-13 Score=148.81 Aligned_cols=148 Identities=19% Similarity=0.287 Sum_probs=106.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCcccccccc
Q psy14500 623 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 702 (938)
Q Consensus 623 ~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~G 702 (938)
.++.+++.+++..... .++.+..-+.++ .+.+.+|||||++.++.++++..++ ++.+.++|+|
T Consensus 15 ~l~~~~i~~l~~~~~~----il~~e~~l~~i~------------~~i~ViGDIHG~~~dL~~l~~~~g~-~~~~~ylFLG 77 (305)
T cd07416 15 RLSEEDALRIITEGAE----ILRQEPNLLRIE------------APVTVCGDIHGQFYDLLKLFEVGGS-PANTRYLFLG 77 (305)
T ss_pred CCCHHHHHHHHHHHHH----HHHhCCCeEccC------------CCEEEEEeCCCCHHHHHHHHHhcCC-CCCceEEEEC
Confidence 3566777777555443 333333222332 3457799999999999999987775 5678999999
Q ss_pred ccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhCCCCHHHHHHHHhcCCceEE-e
Q psy14500 703 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-Y 777 (938)
Q Consensus 703 D~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~-~ 777 (938)
|++|||+.+++++.+++.+ +.++++++||||.+.+....+... +....+ .......+.+|+..||+... .
T Consensus 78 DyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~gf~~----e~~~~y-~~~l~~~~~~~f~~LPlaaii~ 152 (305)
T cd07416 78 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQ----ECKIKY-SERVYDACMEAFDCLPLAALMN 152 (305)
T ss_pred CccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhCchh----HHHHhc-cHHHHHHHHHHHhhccceeEEc
Confidence 9999999999999999887 447899999999987765543321 111111 11224678899999999955 5
Q ss_pred CCEEEEecccCcCCC
Q psy14500 778 KKYLMIHAGVAKQWT 792 (938)
Q Consensus 778 ~~~~~vHAg~~p~~~ 792 (938)
+++++||||++|.+.
T Consensus 153 ~~i~~vHGGi~p~~~ 167 (305)
T cd07416 153 QQFLCVHGGLSPELK 167 (305)
T ss_pred CCEEEEcCCCCcccc
Confidence 579999999999753
No 240
>KOG0744|consensus
Probab=99.49 E-value=7.4e-14 Score=142.66 Aligned_cols=148 Identities=22% Similarity=0.356 Sum_probs=113.4
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh----cCCCeEEEE
Q psy14500 55 PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN----NQKDIIIFI 130 (938)
Q Consensus 55 vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~----~~~~~iL~i 130 (938)
+||+||||||||+||+++|+.+.-. .......+.++++++..+. ++|.++..+.+..+|+...+ .+.-+.++|
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR-~~~~y~~~~liEinshsLF--SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIR-TNDRYYKGQLIEINSHSLF--SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheee-ecCccccceEEEEehhHHH--HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 6999999999999999999987421 1122336688999999988 67888888888877776542 233467889
Q ss_pred eCccccccCCCC----CCccc---hhhhhhhhcc----CCceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHH
Q psy14500 131 DELHTMIGTGKV----EGSID---AGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEE 198 (938)
Q Consensus 131 DEid~l~~~~~~----~~~~~---~~~~L~~~l~----~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e 198 (938)
||+++|...+.+ ..+.+ +.|+++..++ ..++.+.+|+|-.+ .+|.|+.+|-+. .++.+|+.+.
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhHhhheeecCCccHHH
Confidence 999999866532 22222 5677777764 46788888888777 899999999996 8899999999
Q ss_pred HHHHHHhhhhhh
Q psy14500 199 TISILRGLQKKY 210 (938)
Q Consensus 199 ~~~il~~~~~~~ 210 (938)
+..|++.-++.+
T Consensus 332 i~~IlkscieEL 343 (423)
T KOG0744|consen 332 IYEILKSCIEEL 343 (423)
T ss_pred HHHHHHHHHHHH
Confidence 999998776653
No 241
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.49 E-value=2.9e-11 Score=143.56 Aligned_cols=146 Identities=27% Similarity=0.398 Sum_probs=107.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCcccccc------chhHHHHHhCCCEE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG------GYLTEIVRRKPYSL 532 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~------~~l~~~~~~~~~~v 532 (938)
++|+.||+.+|||++...+|+.. +..|+++|--+-++ ....+|. |+..+.+ +.+.++++..- +
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTd---lqeYiGT---yvTdd~G~lsFkEGvLVeAlR~Gy--W 958 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTD---LQEYIGT---YVTDDDGSLSFKEGVLVEALRRGY--W 958 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh---CccEEEecCcccch---HHHHhhc---eeecCCCceeeehhHHHHHHhcCc--E
Confidence 69999999999999999999998 88999998765443 3344444 3333322 56667777665 9
Q ss_pred EEEccccccCHHHHHHHHHhhcCCc-eecCC--CceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccCh
Q psy14500 533 ILLDEIEKANSDVFNILLQILDDGR-LTDNR--GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 609 (938)
Q Consensus 533 l~lDEid~~~~~~~~~Ll~~le~g~-~~~~~--g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 609 (938)
+++||..-++.+++++|.++|++.+ +..+. ...++..+..+.+|.|.+.- ... ++.++.
T Consensus 959 IVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~-YgG-----------------RK~LSr 1020 (4600)
T COG5271 959 IVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGG-YGG-----------------RKGLSR 1020 (4600)
T ss_pred EEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCcc-ccc-----------------hHHHHH
Confidence 9999999999999999999998644 33333 33455677777777775322 111 345677
Q ss_pred HHhhcCCeEEEccCCCHHHHHHHHH
Q psy14500 610 EFINRIDDIIVFRYLNRKNILSIAN 634 (938)
Q Consensus 610 ~l~~R~~~~i~f~~l~~e~~~~i~~ 634 (938)
+|.+|| .-+.|....++++..|++
T Consensus 1021 AFRNRF-lE~hFddipedEle~ILh 1044 (4600)
T COG5271 1021 AFRNRF-LEMHFDDIPEDELEEILH 1044 (4600)
T ss_pred HHHhhh-HhhhcccCcHHHHHHHHh
Confidence 888998 578899999999999887
No 242
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.49 E-value=1.9e-12 Score=153.10 Aligned_cols=198 Identities=19% Similarity=0.268 Sum_probs=130.7
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-------CCCceEEeccccccch
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIEK 499 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~~ 499 (938)
..++||+.+++.+...+.... ..+++|+||||||||++|+++++.... ...+|+.++|..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~---------~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d 224 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF---------PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD 224 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC---------CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC
Confidence 468899999998766653211 126999999999999999999987631 3568899998776311
Q ss_pred -h-hhhhhcCCCCC--Cccccc-------cchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCc----
Q psy14500 500 -H-SISRLIGAPPG--YIGYEE-------GGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGR---- 564 (938)
Q Consensus 500 -~-~~~~l~g~~~~--~~g~~~-------~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~---- 564 (938)
. ....++|.... +.+... .....+.+....+++|||||++.+++..|+.|+.+|+++++....+.
T Consensus 225 ~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 225 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC
Confidence 1 11233442110 000000 00111233455678999999999999999999999998875422110
Q ss_pred -------------eeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHH
Q psy14500 565 -------------TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILS 631 (938)
Q Consensus 565 -------------~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~ 631 (938)
.....++++|++|+.... .+.+.|.+||. .+.|+|++.+++..
T Consensus 305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-----------------------~l~~aLrSR~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 305 DPNVPKYIKKLFEEGAPADFVLIGATTRDPE-----------------------EINPALRSRCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred CcccchhhhhhcccCccceEEEEEecccccc-----------------------ccCHHHHhcee-EEEeCCCCHHHHHH
Confidence 011234566655554322 25678999995 78999999999999
Q ss_pred HHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcc
Q psy14500 632 IANIQLNILKNKLLKMNMDLKISKAALKKISNIGF 666 (938)
Q Consensus 632 i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~ 666 (938)
|+...+.. .+ +.+++++++.|..+.|
T Consensus 361 Il~~~a~~-------~~--v~ls~eal~~L~~ys~ 386 (615)
T TIGR02903 361 IVLNAAEK-------IN--VHLAAGVEELIARYTI 386 (615)
T ss_pred HHHHHHHH-------cC--CCCCHHHHHHHHHCCC
Confidence 98876543 23 4578999999988443
No 243
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.48 E-value=5.8e-13 Score=141.92 Aligned_cols=164 Identities=20% Similarity=0.335 Sum_probs=110.9
Q ss_pred HHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchH----HH-HH
Q psy14500 38 DEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF----ED-RL 112 (938)
Q Consensus 38 ~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~----~~-~l 112 (938)
+.+++++.++.. ..++||+||||||||++|+++|+.+ +.+++.+++..........|.. .. ..
T Consensus 9 ~l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~ 76 (262)
T TIGR02640 9 RVTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVH 76 (262)
T ss_pred HHHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHH
Confidence 445555555554 4789999999999999999999977 6677777654321111111110 00 00
Q ss_pred --------------------HHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------
Q psy14500 113 --------------------KKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------- 159 (938)
Q Consensus 113 --------------------~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 159 (938)
..++..+. . +.+|+|||++.+. .++++.|..+++.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~l~~A~~-~--g~~lllDEi~r~~--------~~~q~~Ll~~Le~~~~~i~~~~~~~~~ 145 (262)
T TIGR02640 77 DQFIHNVVKLEDIVRQNWVDNRLTLAVR-E--GFTLVYDEFTRSK--------PETNNVLLSVFEEGVLELPGKRGTSRY 145 (262)
T ss_pred HHHHHHhhhhhcccceeecCchHHHHHH-c--CCEEEEcchhhCC--------HHHHHHHHHHhcCCeEEccCCCCCCce
Confidence 01222222 2 3499999999983 35677777777532
Q ss_pred -----ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhc
Q psy14500 160 -----ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 233 (938)
Q Consensus 160 -----~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 233 (938)
.+++|+|+|+..|.....+++++.+||..+.++.|+.++..+|++... .+++..++.++.+....
T Consensus 146 i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---------~~~~~~~~~iv~~~~~~ 215 (262)
T TIGR02640 146 VDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT---------DVAEDSAATIVRLVREF 215 (262)
T ss_pred EecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---------CCCHHHHHHHHHHHHHH
Confidence 467999999987766667899999999889999999999999987532 24566666666665443
No 244
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.48 E-value=2.8e-13 Score=153.84 Aligned_cols=161 Identities=22% Similarity=0.359 Sum_probs=105.6
Q ss_pred ccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC-------CCceEEecc
Q psy14500 429 VVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-------EESIIRIDM 493 (938)
Q Consensus 429 viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~-------~~~~~~~~~ 493 (938)
|.|.+..++.+...+... ..++. |...+||+||||||||++|+++|+.+... ...|+.+..
T Consensus 184 IgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~----~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~ 259 (512)
T TIGR03689 184 IGGLDSQIEQIRDAVELPFLHPELYREYDLK----PPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKG 259 (512)
T ss_pred cCChHHHHHHHHHHHHHHhhCHHHHHhccCC----CCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccc
Confidence 456777777777766432 12222 22369999999999999999999988322 112223333
Q ss_pred ccccchhhhhhhcCCCCCCcccccc--chhHHHHHh----CCCEEEEEccccccCH------------HHHHHHHHhhcC
Q psy14500 494 SEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRR----KPYSLILLDEIEKANS------------DVFNILLQILDD 555 (938)
Q Consensus 494 ~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~----~~~~vl~lDEid~~~~------------~~~~~Ll~~le~ 555 (938)
+++.. .|.|..+. +.++..++. ..++||||||+|.+.. .+.+.||..|+.
T Consensus 260 ~eLl~------------kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 260 PELLN------------KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred hhhcc------------cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 22221 14444332 233333332 3578999999997632 245778888874
Q ss_pred CceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHH
Q psy14500 556 GRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIA 633 (938)
Q Consensus 556 g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~ 633 (938)
- ....++++|+|||... .++|++++ |||..|.|++++.++..+|+
T Consensus 328 l---------~~~~~ViVI~ATN~~d------------------------~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il 374 (512)
T TIGR03689 328 V---------ESLDNVIVIGASNRED------------------------MIDPAILRPGRLDVKIRIERPDAEAAADIF 374 (512)
T ss_pred c---------ccCCceEEEeccCChh------------------------hCCHhhcCccccceEEEeCCCCHHHHHHHH
Confidence 1 1235678999999632 37888886 99999999999999999998
Q ss_pred HHHHH
Q psy14500 634 NIQLN 638 (938)
Q Consensus 634 ~~~l~ 638 (938)
..++.
T Consensus 375 ~~~l~ 379 (512)
T TIGR03689 375 SKYLT 379 (512)
T ss_pred HHHhh
Confidence 77764
No 245
>PRK04195 replication factor C large subunit; Provisional
Probab=99.48 E-value=5e-13 Score=155.16 Aligned_cols=187 Identities=25% Similarity=0.366 Sum_probs=133.3
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++|++.++..+..++..+..+ .+..++||+||||||||++|+++|+.+ +..++.++.++......+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g-----~~~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~~~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG-----KPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTADVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC-----CCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccccccHHHHHHHH
Confidence 34789999999999999876633 223479999999999999999999998 6788888888765544343332
Q ss_pred CCCCCCccccccchhHHHHHhCCCEEEEEccccccCH----HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCch
Q psy14500 507 GAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANS----DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 582 (938)
Q Consensus 507 g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~----~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~ 582 (938)
+....+ ..+. ..+..||+|||+|.++. ..++.|+.+++.. +..+|+++|....
T Consensus 86 ~~~~~~------~sl~----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~-------------~~~iIli~n~~~~ 142 (482)
T PRK04195 86 GEAATS------GSLF----GARRKLILLDEVDGIHGNEDRGGARAILELIKKA-------------KQPIILTANDPYD 142 (482)
T ss_pred HHhhcc------Cccc----CCCCeEEEEecCcccccccchhHHHHHHHHHHcC-------------CCCEEEeccCccc
Confidence 221100 0000 02457999999999876 6788999998742 2346777775332
Q ss_pred hhhhhhcchHHHHHHHHHHHHhhccCh-HHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHH
Q psy14500 583 KIKEMEKGDKEIIKLAVMNEVKIYFRP-EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKI 661 (938)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L 661 (938)
..+ .+.+|+ ..|.|++++.+++..++...+. ..+ +.+++++++.|
T Consensus 143 ------------------------~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~-------~eg--i~i~~eaL~~I 188 (482)
T PRK04195 143 ------------------------PSLRELRNAC-LMIEFKRLSTRSIVPVLKRICR-------KEG--IECDDEALKEI 188 (482)
T ss_pred ------------------------cchhhHhccc-eEEEecCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHH
Confidence 233 577788 5899999999998888655443 345 56889999999
Q ss_pred HhhcccccccccccccchHHHHH
Q psy14500 662 SNIGFDLIYGARDVHGCKKSLSI 684 (938)
Q Consensus 662 ~~~~~~~~~~~~dl~~~~~~l~~ 684 (938)
+... -||+..++..|+.
T Consensus 189 a~~s------~GDlR~ain~Lq~ 205 (482)
T PRK04195 189 AERS------GGDLRSAINDLQA 205 (482)
T ss_pred HHHc------CCCHHHHHHHHHH
Confidence 9843 4788887666655
No 246
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.47 E-value=7e-13 Score=148.16 Aligned_cols=183 Identities=18% Similarity=0.358 Sum_probs=122.8
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC--CceEEeccccccchhhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 504 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 504 (938)
+.++|++.+++.+..++.... .++++|+||||||||++|+++++.+++.. .+++.++++++..... .
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~---------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~--~ 83 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN---------LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGK--K 83 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcch--h
Confidence 457899999999988886322 12699999999999999999999986543 4577888876542210 0
Q ss_pred hcCCCCCC---cc------ccccchhHHHH----H----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceee
Q psy14500 505 LIGAPPGY---IG------YEEGGYLTEIV----R----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN 567 (938)
Q Consensus 505 l~g~~~~~---~g------~~~~~~l~~~~----~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~ 567 (938)
.++..+.+ .+ ......+...+ . ..+..+|+|||++.+++..++.|+.++++ .
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~-----------~ 152 (337)
T PRK12402 84 YLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ-----------Y 152 (337)
T ss_pred hhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh-----------c
Confidence 00000000 00 00011122111 1 13457999999999999999999999985 2
Q ss_pred cCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHcc
Q psy14500 568 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 647 (938)
Q Consensus 568 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~ 647 (938)
...+.+|++++... .+.+.+.+|+ ..+.|.|++.+++.+++...+ ...
T Consensus 153 ~~~~~~Il~~~~~~------------------------~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~-------~~~ 200 (337)
T PRK12402 153 SRTCRFIIATRQPS------------------------KLIPPIRSRC-LPLFFRAPTDDELVDVLESIA-------EAE 200 (337)
T ss_pred cCCCeEEEEeCChh------------------------hCchhhcCCc-eEEEecCCCHHHHHHHHHHHH-------HHc
Confidence 23456777776422 2446788898 589999999999888855543 334
Q ss_pred CCeEEEcHHHHHHHHhhc
Q psy14500 648 NMDLKISKAALKKISNIG 665 (938)
Q Consensus 648 ~~~l~~~~~~~~~L~~~~ 665 (938)
+ +.+++++++.|+...
T Consensus 201 ~--~~~~~~al~~l~~~~ 216 (337)
T PRK12402 201 G--VDYDDDGLELIAYYA 216 (337)
T ss_pred C--CCCCHHHHHHHHHHc
Confidence 5 458999999999843
No 247
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.47 E-value=1e-12 Score=143.17 Aligned_cols=107 Identities=25% Similarity=0.375 Sum_probs=77.7
Q ss_pred CeEEEEeCccccccCCCCCC----ccchhhhhhhhccC------------CceEEEEecChhHHHHhhhcCHHHHcccce
Q psy14500 125 DIIIFIDELHTMIGTGKVEG----SIDAGNMLKPELSR------------GELHCIGATTLNEYRQYIEKDAAFERRFQK 188 (938)
Q Consensus 125 ~~iL~iDEid~l~~~~~~~~----~~~~~~~L~~~l~~------------~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~ 188 (938)
..|+||||+|++.....+.+ ...++..|++++|. .+|.||++.-.... +...+-|.|.-||+.
T Consensus 248 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~Pi 326 (441)
T TIGR00390 248 SGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLA-KPSDLIPELQGRFPI 326 (441)
T ss_pred CCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccce
Confidence 34999999999987542211 23378889999975 46778887653221 112577999999997
Q ss_pred -EEeeCCCHHHHHHHH----Hhhhhhhhc---ccC--CCCCHHHHHHHHHhhhh
Q psy14500 189 -ILVEEPDIEETISIL----RGLQKKYEV---HHG--VEITDPAIVAASELSYR 232 (938)
Q Consensus 189 -i~~~~p~~~e~~~il----~~~~~~~~~---~~~--~~i~~~~l~~~~~~s~~ 232 (938)
+.+.+++.++...|| ..+.++|.. ..+ +.++++++.++++.+..
T Consensus 327 ~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 380 (441)
T TIGR00390 327 RVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYN 380 (441)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHH
Confidence 899999999999999 345555442 344 56799999999998764
No 248
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.47 E-value=2.4e-12 Score=134.98 Aligned_cols=187 Identities=15% Similarity=0.190 Sum_probs=126.9
Q ss_pred cCCCCCccc--cHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccc
Q psy14500 27 LGKLDPVIG--RDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKY 104 (938)
Q Consensus 27 ~~~~~~lvG--~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~ 104 (938)
+.+|++++. .+..++.+..++......+++|+||+|||||++|+++++.+... +..++.+++..+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~~--- 80 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQA--- 80 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHHh---
Confidence 346777773 55678888887766777899999999999999999999987542 446777887665421
Q ss_pred cchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhc----cCCceEEEEecChhHHHHhhhcC-
Q psy14500 105 RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEKD- 179 (938)
Q Consensus 105 ~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l----~~~~i~vI~~tn~~~~~~~~~ld- 179 (938)
...++..... ..+|+|||++.+.... +.++.|...+ +.+. .+|.+++... . .....
T Consensus 81 -------~~~~~~~~~~---~~lLvIDdi~~l~~~~------~~~~~L~~~l~~~~~~~~-~iIits~~~~-~-~~~~~~ 141 (226)
T TIGR03420 81 -------DPEVLEGLEQ---ADLVCLDDVEAIAGQP------EWQEALFHLYNRVREAGG-RLLIAGRAAP-A-QLPLRL 141 (226)
T ss_pred -------HHHHHhhccc---CCEEEEeChhhhcCCh------HHHHHHHHHHHHHHHcCC-eEEEECCCCh-H-HCCccc
Confidence 1233333322 2389999999984421 1122333332 3333 4555555332 1 11223
Q ss_pred HHHHcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHH
Q psy14500 180 AAFERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 180 ~al~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 252 (938)
+.+.+||. .+.+++|+.+++..+++..+.+ .++.++++++..++..+.+-+ +.+..+++.+..
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~l~~L~~~~~gn~------r~L~~~l~~~~~ 207 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAAR----RGLQLPDEVADYLLRHGSRDM------GSLMALLDALDR 207 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCCH------HHHHHHHHHHHH
Confidence 78898884 4999999999999999876653 478899999999998777666 777777777654
No 249
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.47 E-value=7.3e-13 Score=144.32 Aligned_cols=106 Identities=25% Similarity=0.386 Sum_probs=77.6
Q ss_pred eEEEEeCccccccCCCCCC----ccchhhhhhhhccC------------CceEEEEecChhHHHHhhhcCHHHHcccce-
Q psy14500 126 IIIFIDELHTMIGTGKVEG----SIDAGNMLKPELSR------------GELHCIGATTLNEYRQYIEKDAAFERRFQK- 188 (938)
Q Consensus 126 ~iL~iDEid~l~~~~~~~~----~~~~~~~L~~~l~~------------~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~- 188 (938)
.|+||||||++....++.+ ...++..|++++|. .+|.||++.-.... +...+-|.|..||+.
T Consensus 251 GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~Pi~ 329 (443)
T PRK05201 251 GIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS-KPSDLIPELQGRFPIR 329 (443)
T ss_pred CEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccceE
Confidence 4999999999987643211 23378889999975 46778887653221 112577999999997
Q ss_pred EEeeCCCHHHHHHHH----Hhhhhhhhc---ccC--CCCCHHHHHHHHHhhhh
Q psy14500 189 ILVEEPDIEETISIL----RGLQKKYEV---HHG--VEITDPAIVAASELSYR 232 (938)
Q Consensus 189 i~~~~p~~~e~~~il----~~~~~~~~~---~~~--~~i~~~~l~~~~~~s~~ 232 (938)
+.+.+++.++...|| ..+.++|.. ..| +.++++++.++++.+..
T Consensus 330 v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 330 VELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred EECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 899999999999999 445555443 234 56899999999998865
No 250
>CHL00176 ftsH cell division protein; Validated
Probab=99.47 E-value=4.8e-13 Score=157.37 Aligned_cols=194 Identities=20% Similarity=0.289 Sum_probs=121.8
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLS---DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~---~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+++.|.+++++.+...+........ ....+..++||+||||||||++|+++|..+ +.+++.++++++....
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~~--- 256 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEMF--- 256 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHHh---
Confidence 3456666666666555533221100 001122369999999999999999999988 7899999988775421
Q ss_pred hhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccC-----------H---HHHHHHHHhhcCCceecCCCceeecC
Q psy14500 504 RLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKAN-----------S---DVFNILLQILDDGRLTDNRGRTINFR 569 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~-----------~---~~~~~Ll~~le~g~~~~~~g~~~~~~ 569 (938)
.|. +....+.++...+...++||||||+|.+. . ..++.||..++.- ....
T Consensus 257 --~g~-----~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~---------~~~~ 320 (638)
T CHL00176 257 --VGV-----GAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF---------KGNK 320 (638)
T ss_pred --hhh-----hHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc---------cCCC
Confidence 111 11112334445556667999999999873 2 2345555555531 1224
Q ss_pred CeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHcc
Q psy14500 570 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 647 (938)
Q Consensus 570 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~ 647 (938)
++++|+|||... .+++.++ +|||..+.|++++.++..+|++..+...
T Consensus 321 ~ViVIaaTN~~~------------------------~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~------- 369 (638)
T CHL00176 321 GVIVIAATNRVD------------------------ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK------- 369 (638)
T ss_pred CeeEEEecCchH------------------------hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc-------
Confidence 578889998632 2455565 4899999999999999999987766541
Q ss_pred CCeEEEcHHHHHHHHhhcccccccccccccc
Q psy14500 648 NMDLKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 648 ~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
...++..+..++. ..+.+..+||.+.
T Consensus 370 ---~~~~d~~l~~lA~--~t~G~sgaDL~~l 395 (638)
T CHL00176 370 ---KLSPDVSLELIAR--RTPGFSGADLANL 395 (638)
T ss_pred ---ccchhHHHHHHHh--cCCCCCHHHHHHH
Confidence 1122334555655 2234566777766
No 251
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.47 E-value=7.7e-13 Score=155.72 Aligned_cols=200 Identities=21% Similarity=0.312 Sum_probs=130.1
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc---eEEecc---ccccch
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES---IIRIDM---SEFIEK 499 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~---~~~~~~---~~~~~~ 499 (938)
.+.|+||+.+++.+...++..+. .+.+||+||+|+|||++|+++|+.++..... ..+-.| ..+...
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l--------~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~ 87 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKL--------AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQ 87 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcC
Confidence 46789999999999999985542 2358999999999999999999998532110 001111 111110
Q ss_pred hh--hhhhcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEE
Q psy14500 500 HS--ISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTII 573 (938)
Q Consensus 500 ~~--~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 573 (938)
.. +..+-+ .+..+.+..+.+...+.. +.+.|++|||++.++...++.|+++||+ +...++|
T Consensus 88 ~~~n~~~ld~--~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe-----------pp~~tif 154 (614)
T PRK14971 88 RSYNIHELDA--ASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE-----------PPSYAIF 154 (614)
T ss_pred CCCceEEecc--cccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC-----------CCCCeEE
Confidence 00 000101 011111222222222222 3367999999999999999999999997 5567888
Q ss_pred EEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEE
Q psy14500 574 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKI 653 (938)
Q Consensus 574 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~ 653 (938)
|++|+.. ..+.+.+.+|| .++.|.+++.+++...+...+ ...| +.+
T Consensus 155 IL~tt~~------------------------~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia-------~~eg--i~i 200 (614)
T PRK14971 155 ILATTEK------------------------HKILPTILSRC-QIFDFNRIQVADIVNHLQYVA-------SKEG--ITA 200 (614)
T ss_pred EEEeCCc------------------------hhchHHHHhhh-heeecCCCCHHHHHHHHHHHH-------HHcC--CCC
Confidence 8888742 34678899999 589999999999998755433 3345 678
Q ss_pred cHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 654 SKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 654 ~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+++++++|+... -||+......++++.
T Consensus 201 ~~~al~~La~~s------~gdlr~al~~Lekl~ 227 (614)
T PRK14971 201 EPEALNVIAQKA------DGGMRDALSIFDQVV 227 (614)
T ss_pred CHHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 899999998743 244444433354443
No 252
>PRK05642 DNA replication initiation factor; Validated
Probab=99.46 E-value=1.8e-12 Score=135.49 Aligned_cols=189 Identities=15% Similarity=0.196 Sum_probs=126.7
Q ss_pred CCCCcc-ccHHHHHHHHHHH-h---cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14500 29 KLDPVI-GRDDEIRRAIQVL-Q---RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 103 (938)
Q Consensus 29 ~~~~lv-G~~~~~~~l~~~l-~---~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~ 103 (938)
+|+.++ |........+..+ . ....++++|+||+|||||+|++++++.+... +..++.++...+...
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~-- 87 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR-- 87 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh--
Confidence 788887 5444333333222 2 1223678999999999999999999887432 456666777665421
Q ss_pred ccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHHHH
Q psy14500 104 YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFE 183 (938)
Q Consensus 104 ~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al~ 183 (938)
...+++.+...+ +|+|||++.+.+... ....+...+....+++..++|++++.+.. .....+.+.
T Consensus 88 --------~~~~~~~~~~~d---~LiiDDi~~~~~~~~--~~~~Lf~l~n~~~~~g~~ilits~~~p~~--l~~~~~~L~ 152 (234)
T PRK05642 88 --------GPELLDNLEQYE---LVCLDDLDVIAGKAD--WEEALFHLFNRLRDSGRRLLLAASKSPRE--LPIKLPDLK 152 (234)
T ss_pred --------hHHHHHhhhhCC---EEEEechhhhcCChH--HHHHHHHHHHHHHhcCCEEEEeCCCCHHH--cCccCccHH
Confidence 123333344333 899999998754321 11224444445556777777777766651 223479999
Q ss_pred ccc---ceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHH
Q psy14500 184 RRF---QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 251 (938)
Q Consensus 184 ~Rf---~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 251 (938)
+|| ..+.+.+|+.+++..+++..+.. .++.++++++++++..+.+.. +.+..+++...
T Consensus 153 SRl~~gl~~~l~~~~~e~~~~il~~ka~~----~~~~l~~ev~~~L~~~~~~d~------r~l~~~l~~l~ 213 (234)
T PRK05642 153 SRLTLALVFQMRGLSDEDKLRALQLRASR----RGLHLTDEVGHFILTRGTRSM------SALFDLLERLD 213 (234)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH------HHHHHHHHHHH
Confidence 999 45889999999999999854433 378999999999999998887 76666666554
No 253
>KOG1969|consensus
Probab=99.46 E-value=3.1e-13 Score=151.86 Aligned_cols=204 Identities=17% Similarity=0.220 Sum_probs=148.8
Q ss_pred HHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHh----------------------------------cCCCCCcEEE
Q psy14500 13 YLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ----------------------------------RRSKNNPVLI 58 (938)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~----------------------------------~~~~~~vLL~ 58 (938)
..++...=|+++|+|+.|.+++|.+.+=+.++.||. ++...-+||+
T Consensus 253 ~ts~h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~ 332 (877)
T KOG1969|consen 253 KTSSHDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLC 332 (877)
T ss_pred ccCCCcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEee
Confidence 344344468999999999999999999888888875 1222336999
Q ss_pred cCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccc
Q psy14500 59 GEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHT 135 (938)
Q Consensus 59 Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~ 135 (938)
||||-||||||+.+|+.. |..++++|.++-..+.. ..+.+..++..-. +...|.+|+|||||.
T Consensus 333 GppGlGKTTLAHViAkqa----------GYsVvEINASDeRt~~~----v~~kI~~avq~~s~l~adsrP~CLViDEIDG 398 (877)
T KOG1969|consen 333 GPPGLGKTTLAHVIAKQA----------GYSVVEINASDERTAPM----VKEKIENAVQNHSVLDADSRPVCLVIDEIDG 398 (877)
T ss_pred cCCCCChhHHHHHHHHhc----------CceEEEecccccccHHH----HHHHHHHHHhhccccccCCCcceEEEecccC
Confidence 999999999999999998 99999999987654332 2333333333222 125688999999996
Q ss_pred cccCCCCCCccchhhhhhhhccC----------C-------------ceEEEEecChhHHHHhhhcCHHHHc--cc-ceE
Q psy14500 136 MIGTGKVEGSIDAGNMLKPELSR----------G-------------ELHCIGATTLNEYRQYIEKDAAFER--RF-QKI 189 (938)
Q Consensus 136 l~~~~~~~~~~~~~~~L~~~l~~----------~-------------~i~vI~~tn~~~~~~~~~ld~al~~--Rf-~~i 189 (938)
-. ..+.+.++.++.. + .-.||++||..- -|+|+. -| ..|
T Consensus 399 a~--------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY-------aPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 399 AP--------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY-------APALRPLRPFAEII 463 (877)
T ss_pred Cc--------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc-------chhhhhcccceEEE
Confidence 52 2345556655521 0 113788888653 455555 33 359
Q ss_pred EeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHH
Q psy14500 190 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 190 ~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 255 (938)
.|.+|+.....+-|+.++.+ ++..++..++..++.++..++ +..+.-|...+....
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~r----E~mr~d~~aL~~L~el~~~DI------RsCINtLQfLa~~~~ 519 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHR----ENMRADSKALNALCELTQNDI------RSCINTLQFLASNVD 519 (877)
T ss_pred EecCCChhHHHHHHHHHHhh----hcCCCCHHHHHHHHHHhcchH------HHHHHHHHHHHHhcc
Confidence 99999999988888888875 788999999999999999999 777777777665544
No 254
>KOG0731|consensus
Probab=99.46 E-value=3.5e-13 Score=155.73 Aligned_cols=164 Identities=26% Similarity=0.402 Sum_probs=123.1
Q ss_pred hccccChHHHHHHHHHHHHhhh-------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 498 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~-------~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 498 (938)
+++|.|.++|+..|.+.+...+ .|.+-|+ .+||+||||||||.||+|+|.+. +.||+.+..++|..
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPk----GvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFvE 382 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPK----GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFVE 382 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcC----ceEEECCCCCcHHHHHHHHhccc---CCceeeechHHHHH
Confidence 5678899999998888885443 3333333 59999999999999999999888 99999999999886
Q ss_pred hhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCH---------------HHHHHHHHhhcCCceecCCC
Q psy14500 499 KHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANS---------------DVFNILLQILDDGRLTDNRG 563 (938)
Q Consensus 499 ~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~---------------~~~~~Ll~~le~g~~~~~~g 563 (938)
. +.| +|....+.++...+...+||+|+||||.... ..+|.||..||. ..
T Consensus 383 ~-----~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg-f~----- 446 (774)
T KOG0731|consen 383 M-----FVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG-FE----- 446 (774)
T ss_pred H-----hcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC-Cc-----
Confidence 3 111 1223345667777777889999999986542 457888888874 21
Q ss_pred ceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 564 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 564 ~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
...+++++++||.+. .++++|+ +|||..|....++.....+|++-++..
T Consensus 447 ---~~~~vi~~a~tnr~d------------------------~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~ 497 (774)
T KOG0731|consen 447 ---TSKGVIVLAATNRPD------------------------ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK 497 (774)
T ss_pred ---CCCcEEEEeccCCcc------------------------ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhc
Confidence 225688999999743 2556666 799999999999999999997665544
No 255
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=99.46 E-value=2.2e-13 Score=145.48 Aligned_cols=148 Identities=20% Similarity=0.321 Sum_probs=106.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCcccccccc
Q psy14500 623 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 702 (938)
Q Consensus 623 ~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~G 702 (938)
.++.+++.+++..... .++.+..-+.++ .+.+.+||+||++.++.+++...++ .+.+.++|+|
T Consensus 15 ~l~~~~i~~l~~~~~~----il~~e~~~~~i~------------~~i~vvGDIHG~~~~L~~l~~~~~~-~~~~~~lfLG 77 (303)
T PTZ00239 15 CLPERDLKLICERAKE----IFLEESNVQPVR------------APVNVCGDIHGQFYDLQALFKEGGD-IPNANYIFIG 77 (303)
T ss_pred CCCHHHHHHHHHHHHH----HHHhCCCeEecC------------CCEEEEEeCCCCHHHHHHHHHhcCC-CCCceEEEee
Confidence 4667788877655443 333332222221 3457799999999999999988775 4568899999
Q ss_pred ccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhCCCCHHHHHHHHhcCCceEE-e
Q psy14500 703 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-Y 777 (938)
Q Consensus 703 D~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~-~ 777 (938)
|++|||+.+++++.+++.+ +.++++++||||.+.+....+.. .+....+........+..|+..||++.. .
T Consensus 78 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~----~e~~~ky~~~~~~~~~~~~f~~LPlaaii~ 153 (303)
T PTZ00239 78 DFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFY----EEILRKYGNSNPWRLFMDVFDCLPLAALIE 153 (303)
T ss_pred eEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChH----HHHHHHhcChhHHHHHHHHHHhCchheEEc
Confidence 9999999999999999876 45789999999998877654321 1122222222234567889999999955 5
Q ss_pred CCEEEEecccCcCC
Q psy14500 778 KKYLMIHAGVAKQW 791 (938)
Q Consensus 778 ~~~~~vHAg~~p~~ 791 (938)
+++++||||++|..
T Consensus 154 ~~i~cvHgGi~p~~ 167 (303)
T PTZ00239 154 GQILCVHGGLSPDM 167 (303)
T ss_pred CeEEEEcCccCccc
Confidence 67999999999964
No 256
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=4.8e-13 Score=157.33 Aligned_cols=182 Identities=20% Similarity=0.298 Sum_probs=122.5
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce-EEeccccccchhhhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI-IRIDMSEFIEKHSISR 504 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~-~~~~~~~~~~~~~~~~ 504 (938)
...++||+.++..+..++...+. .+++||+||+|+|||++|+++|+.++.....- ....|... ...+
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl--------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C----~~C~ 82 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRI--------APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKC----ELCR 82 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCC--------CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCccc----HHHH
Confidence 45788999999999999985542 24799999999999999999999996432100 00011110 0001
Q ss_pred hc--CCCCC--------CccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 505 LI--GAPPG--------YIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 505 l~--g~~~~--------~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
.+ |..+. ..+.+..+.+...+.. +.+.|+||||+|.|+...++.||+.||+ +...
T Consensus 83 ~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-----------Pp~~ 151 (620)
T PRK14948 83 AIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-----------PPPR 151 (620)
T ss_pred HHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-----------CCcC
Confidence 11 11111 1222222333333322 3468999999999999999999999997 5567
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
++||++|+... .+.+.+.+|| ..+.|.+++.+++...+...+ ...+
T Consensus 152 tvfIL~t~~~~------------------------~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia-------~keg-- 197 (620)
T PRK14948 152 VVFVLATTDPQ------------------------RVLPTIISRC-QRFDFRRIPLEAMVQHLSEIA-------EKES-- 197 (620)
T ss_pred eEEEEEeCChh------------------------hhhHHHHhhe-eEEEecCCCHHHHHHHHHHHH-------HHhC--
Confidence 88888887422 2567899999 589999999988777644433 2334
Q ss_pred EEEcHHHHHHHHhh
Q psy14500 651 LKISKAALKKISNI 664 (938)
Q Consensus 651 l~~~~~~~~~L~~~ 664 (938)
+.++++++..|+..
T Consensus 198 i~is~~al~~La~~ 211 (620)
T PRK14948 198 IEIEPEALTLVAQR 211 (620)
T ss_pred CCCCHHHHHHHHHH
Confidence 56888999998874
No 257
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.46 E-value=5.6e-13 Score=148.85 Aligned_cols=164 Identities=26% Similarity=0.415 Sum_probs=112.1
Q ss_pred hccccChHHHHHHHHHHHHhhh--------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSR--------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~--------~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
.++|.|.+..++.+...+.... .|+. |...+||+||||||||++|+++|+.+ +.+++.+.++++.
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~----~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l~ 216 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGID----PPRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEFV 216 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC----CCceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHH
Confidence 3568899999999988875332 1221 22379999999999999999999988 6788888766553
Q ss_pred chhhhhhhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCc
Q psy14500 498 EKHSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGR 564 (938)
Q Consensus 498 ~~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~ 564 (938)
.. |.|... .+.++...+...++||||||+|.+. ..++..+.+++..-. |.
T Consensus 217 ~k------------~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld-----~~ 279 (398)
T PTZ00454 217 QK------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD-----GF 279 (398)
T ss_pred HH------------hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh-----cc
Confidence 32 333322 1334455566677999999999763 234444444443200 00
Q ss_pred eeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHH
Q psy14500 565 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLN 638 (938)
Q Consensus 565 ~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~ 638 (938)
....++++|+|||... .++|.++. |||..|.|++++.++...|+...+.
T Consensus 280 -~~~~~v~VI~aTN~~d------------------------~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 280 -DQTTNVKVIMATNRAD------------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred -CCCCCEEEEEecCCch------------------------hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 0124678899999643 36777775 9999999999999999988765543
No 258
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=99.46 E-value=4.5e-13 Score=143.40 Aligned_cols=148 Identities=22% Similarity=0.341 Sum_probs=105.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCcccccccc
Q psy14500 623 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 702 (938)
Q Consensus 623 ~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~G 702 (938)
.++.+++.+++.....- +..+..-+.++ .+...+|||||++.++.+++...++ ++.+.++|+|
T Consensus 31 ~l~~~~i~~l~~~~~~i----l~~ep~ll~i~------------~~i~vvGDIHG~~~dL~~l~~~~g~-~~~~~ylfLG 93 (320)
T PTZ00480 31 NLTEAEVRGLCIKARDI----FISQPILLELE------------APLKICGDVHGQYFDLLRLFEYGGY-PPESNYLFLG 93 (320)
T ss_pred CCCHHHHHHHHHHHHHH----HHhCCceEecC------------CCeEEEeecccCHHHHHHHHHhcCC-CCcceEEEec
Confidence 46778888876554433 33332112221 3456789999999999999988886 4568899999
Q ss_pred ccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhCCCCHHHHHHHHhcCCce-EEe
Q psy14500 703 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYY 777 (938)
Q Consensus 703 D~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~-~~~ 777 (938)
|++|||+.+++++.+++.+ +.++++++||||...++...+.... ............+...+..||+. +..
T Consensus 94 DyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~e-----~~~~y~~~l~~~~~~~F~~LPlaAiI~ 168 (320)
T PTZ00480 94 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDE-----CKRRYTIKLWKTFTDCFNCLPVAALID 168 (320)
T ss_pred eecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHHH-----HHhhcCHHHHHHHHHHHHhccHhheec
Confidence 9999999999999998876 4578999999999877654432110 00001111235677888999999 566
Q ss_pred CCEEEEecccCcCCC
Q psy14500 778 KKYLMIHAGVAKQWT 792 (938)
Q Consensus 778 ~~~~~vHAg~~p~~~ 792 (938)
+++++||||++|...
T Consensus 169 ~~i~cvHGGI~p~~~ 183 (320)
T PTZ00480 169 EKILCMHGGLSPELS 183 (320)
T ss_pred CcEEEEcCCcCcccC
Confidence 789999999999653
No 259
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.45 E-value=3.7e-12 Score=145.39 Aligned_cols=223 Identities=17% Similarity=0.206 Sum_probs=147.2
Q ss_pred HHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHh----cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14500 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 89 (938)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~----~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~ 89 (938)
+.+....+...+.| +.++||+++++++...+. ...+.+++|+||||||||++++.+++.+.... .+..
T Consensus 16 ~~~~~~~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~ 87 (394)
T PRK00411 16 IFKDEEVLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVV 87 (394)
T ss_pred eeCChhhCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcE
Confidence 34444455555555 578999999999888774 34557899999999999999999999875432 1355
Q ss_pred EEEEehhhhhc-------------C--ccccc-hHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhh
Q psy14500 90 ILLLDIALLLA-------------G--TKYRG-EFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLK 153 (938)
Q Consensus 90 ~~~~~~~~l~~-------------~--~~~~g-~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~ 153 (938)
++.+++..... + ....| .....+..+...+...+.+.||+|||+|.+.... ..+....|.
T Consensus 88 ~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----~~~~l~~l~ 163 (394)
T PRK00411 88 YVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----GNDVLYSLL 163 (394)
T ss_pred EEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----CchHHHHHH
Confidence 66666632210 0 00111 2333344444444444557899999999997211 123333343
Q ss_pred hhcc---CCceEEEEecChhHHHHhhhcCHHHHcccc--eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHH
Q psy14500 154 PELS---RGELHCIGATTLNEYRQYIEKDAAFERRFQ--KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASE 228 (938)
Q Consensus 154 ~~l~---~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~ 228 (938)
..++ ..++.+|+++|..+... .+++.+.+||. .|.|++++.++...|++...+.- .....+++++++.++.
T Consensus 164 ~~~~~~~~~~v~vI~i~~~~~~~~--~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~ 239 (394)
T PRK00411 164 RAHEEYPGARIGVIGISSDLTFLY--ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--FYPGVVDDEVLDLIAD 239 (394)
T ss_pred HhhhccCCCeEEEEEEECCcchhh--hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--cccCCCCHhHHHHHHH
Confidence 3332 23688899988765433 36888999885 48999999999999998765431 1234589999999998
Q ss_pred hhhhccccCCCchhhhhHHHHHHHHHH
Q psy14500 229 LSYRYISDRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 229 ~s~~~~~~~~~p~~a~~ll~~a~~~~~ 255 (938)
.+.+. .+-.+.+++++..|+..+.
T Consensus 240 ~~~~~---~Gd~r~a~~ll~~a~~~a~ 263 (394)
T PRK00411 240 LTARE---HGDARVAIDLLRRAGLIAE 263 (394)
T ss_pred HHHHh---cCcHHHHHHHHHHHHHHHH
Confidence 88442 1233888899988766554
No 260
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.45 E-value=5.7e-13 Score=155.42 Aligned_cols=164 Identities=23% Similarity=0.327 Sum_probs=111.1
Q ss_pred ccccChHHHHHHHHHHHHhhhcCC---CCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGL---SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~---~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
++++|++.+++.+...+....... .....+...+||+||||||||++|+++|..+ +.+++.++++++...
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~---- 127 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM---- 127 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHHH----
Confidence 346777777777666554322100 0011222369999999999999999999987 788998888776532
Q ss_pred hhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCCceee
Q psy14500 504 RLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRTIN 567 (938)
Q Consensus 504 ~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~ 567 (938)
+.|... .+.++...+...++||||||||.+.+ ..++.||..|+.- ..
T Consensus 128 --------~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~---------~~ 190 (495)
T TIGR01241 128 --------FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF---------GT 190 (495)
T ss_pred --------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc---------cC
Confidence 222211 23344445556679999999988643 3456677777531 12
Q ss_pred cCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHH
Q psy14500 568 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLN 638 (938)
Q Consensus 568 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~ 638 (938)
..++++|+|||.+. .++|.+++ |||..+.+++++.++..+|+...+.
T Consensus 191 ~~~v~vI~aTn~~~------------------------~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 191 NTGVIVIAATNRPD------------------------VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK 239 (495)
T ss_pred CCCeEEEEecCChh------------------------hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHh
Confidence 24578899999643 25677774 9999999999999999999776654
No 261
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.45 E-value=1.7e-12 Score=146.33 Aligned_cols=188 Identities=22% Similarity=0.316 Sum_probs=128.9
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC-------ceEEeccccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-------SIIRIDMSEFIE 498 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~-------~~~~~~~~~~~~ 498 (938)
.+.++||+.+++.+...++... ..+++||+||||+|||++|+++++.++..+. ++..+++..
T Consensus 16 ~~~iig~~~~~~~l~~~i~~~~--------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~--- 84 (367)
T PRK14970 16 FDDVVGQSHITNTLLNAIENNH--------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA--- 84 (367)
T ss_pred HHhcCCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc---
Confidence 3568899999999999997533 1247999999999999999999999854221 111111110
Q ss_pred hhhhhhhcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 499 KHSISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 499 ~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
.+..+.+..+.+...+.. ++..||+|||++.++...++.|++.+++ +...+++|
T Consensus 85 -----------~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~-----------~~~~~~~I 142 (367)
T PRK14970 85 -----------ASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE-----------PPAHAIFI 142 (367)
T ss_pred -----------ccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC-----------CCCceEEE
Confidence 001111111222222222 3457999999999999999999999986 34556777
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
++++.. ..+.+++.+|+ .++.|.+++.+++..++...+ ...+ +.++
T Consensus 143 l~~~~~------------------------~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~-------~~~g--~~i~ 188 (367)
T PRK14970 143 LATTEK------------------------HKIIPTILSRC-QIFDFKRITIKDIKEHLAGIA-------VKEG--IKFE 188 (367)
T ss_pred EEeCCc------------------------ccCCHHHHhcc-eeEecCCccHHHHHHHHHHHH-------HHcC--CCCC
Confidence 777642 23667888999 589999999999988855544 3345 6789
Q ss_pred HHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 655 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 655 ~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
++++++|+... -+|+......++++.
T Consensus 189 ~~al~~l~~~~------~gdlr~~~~~lekl~ 214 (367)
T PRK14970 189 DDALHIIAQKA------DGALRDALSIFDRVV 214 (367)
T ss_pred HHHHHHHHHhC------CCCHHHHHHHHHHHH
Confidence 99999998832 256666655566665
No 262
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=1.1e-12 Score=155.05 Aligned_cols=201 Identities=18% Similarity=0.290 Sum_probs=128.0
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC-c-e-EEeccc---cccch
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-S-I-IRIDMS---EFIEK 499 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~-~-~-~~~~~~---~~~~~ 499 (938)
.+.++||+++++.+..++...+.+ +.+||+||+|+|||++|+++|+.++.... + . .+-.|. .+...
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i~--------~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRVA--------HAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEG 86 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCCc--------eEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcC
Confidence 457899999999999998755422 36899999999999999999999853211 0 0 000111 11100
Q ss_pred hhhhhhcC-CCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 500 HSISRLIG-APPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 500 ~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
.... ++- ...+..+.+..+.+.+.+.. +.+.||||||+|.++...++.|++.|++ ....++||
T Consensus 87 ~~~d-~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-----------pp~~tv~I 154 (585)
T PRK14950 87 SAVD-VIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPPHAIFI 154 (585)
T ss_pred CCCe-EEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-----------CCCCeEEE
Confidence 0000 000 00012222222333333322 4468999999999999999999999997 34567777
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
++++.. ..+.+.+.+||. .+.|.+++.+++..++...+ ...+ +.++
T Consensus 155 l~t~~~------------------------~kll~tI~SR~~-~i~f~~l~~~el~~~L~~~a-------~~eg--l~i~ 200 (585)
T PRK14950 155 LATTEV------------------------HKVPATILSRCQ-RFDFHRHSVADMAAHLRKIA-------AAEG--INLE 200 (585)
T ss_pred EEeCCh------------------------hhhhHHHHhccc-eeeCCCCCHHHHHHHHHHHH-------HHcC--CCCC
Confidence 777631 124567889994 89999999998888855443 3345 5689
Q ss_pred HHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 655 KAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 655 ~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
++++..|+... -||+......|+++.
T Consensus 201 ~eal~~La~~s------~Gdlr~al~~LekL~ 226 (585)
T PRK14950 201 PGALEAIARAA------TGSMRDAENLLQQLA 226 (585)
T ss_pred HHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 99999998733 245554444455443
No 263
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.44 E-value=1.7e-12 Score=145.26 Aligned_cols=188 Identities=26% Similarity=0.324 Sum_probs=125.7
Q ss_pred CccccHHHHHHHHHHHhc----------------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 32 PVIGRDDEIRRAIQVLQR----------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~----------------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
.+|||+.+++.+...+.. ...+++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 72 ~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~~id~ 141 (412)
T PRK05342 72 YVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFAIADA 141 (412)
T ss_pred HeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCceecch
Confidence 389999999988665521 134789999999999999999999988 778888887
Q ss_pred hhhhcCccccch-HHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCC------CccchhhhhhhhccCC------
Q psy14500 96 ALLLAGTKYRGE-FEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVE------GSIDAGNMLKPELSRG------ 159 (938)
Q Consensus 96 ~~l~~~~~~~g~-~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~------~~~~~~~~L~~~l~~~------ 159 (938)
+.+.. ..|.|. .+..+..++..+. ....+.||||||+|.+...+... +...+++.|+.+|+..
T Consensus 142 ~~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~ 220 (412)
T PRK05342 142 TTLTE-AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPP 220 (412)
T ss_pred hhccc-CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCC
Confidence 76543 346665 3333444443321 12346799999999998653211 1124778888888522
Q ss_pred ---------ceEEEEecCh--------h-------------------------------HHH--------HhhhcCHHHH
Q psy14500 160 ---------ELHCIGATTL--------N-------------------------------EYR--------QYIEKDAAFE 183 (938)
Q Consensus 160 ---------~i~vI~~tn~--------~-------------------------------~~~--------~~~~ld~al~ 183 (938)
..++|.|+|- . .+. ..+.+.|.|.
T Consensus 221 ~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEfl 300 (412)
T PRK05342 221 QGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFI 300 (412)
T ss_pred CCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHh
Confidence 1233444443 0 000 0112578999
Q ss_pred cccce-EEeeCCCHHHHHHHHH----hhhhhhhc---c--cCCCCCHHHHHHHHHhh
Q psy14500 184 RRFQK-ILVEEPDIEETISILR----GLQKKYEV---H--HGVEITDPAIVAASELS 230 (938)
Q Consensus 184 ~Rf~~-i~~~~p~~~e~~~il~----~~~~~~~~---~--~~~~i~~~~l~~~~~~s 230 (938)
.|++. +.|.+++.++...|+. .+.+++.. . ..+.++++++.++++.+
T Consensus 301 gRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 301 GRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred CCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 99986 8899999999999996 34444321 2 33678999999999874
No 264
>KOG0739|consensus
Probab=99.44 E-value=5.8e-13 Score=134.40 Aligned_cols=181 Identities=17% Similarity=0.305 Sum_probs=121.5
Q ss_pred ccccChHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~---~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
++|-|.+.|+++|.+++-.... .+...++|...+||+||||||||.||+++|... +..|+.+.-+++.+.
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDLvSK---- 205 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK---- 205 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHHHHH----
Confidence 3456777777777777632211 122345677789999999999999999999988 567888877776654
Q ss_pred hhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 504 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
+.|+++. +.+++..++..++||||||||.+. +.+-..||--|+. . -.+...
T Consensus 206 --------WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqG-V-------G~d~~g 269 (439)
T KOG0739|consen 206 --------WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQG-V-------GNDNDG 269 (439)
T ss_pred --------HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhc-c-------ccCCCc
Confidence 4455443 567888899999999999999763 3445556655552 1 124556
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
++++.+||.+.. ++..+..||+..|.++-+.......+....+ . ...
T Consensus 270 vLVLgATNiPw~------------------------LDsAIRRRFekRIYIPLPe~~AR~~MF~lhl-------G--~tp 316 (439)
T KOG0739|consen 270 VLVLGATNIPWV------------------------LDSAIRRRFEKRIYIPLPEAHARARMFKLHL-------G--DTP 316 (439)
T ss_pred eEEEecCCCchh------------------------HHHHHHHHhhcceeccCCcHHHhhhhheecc-------C--CCc
Confidence 788899998654 5667888888777777766554444422222 1 122
Q ss_pred EEEcHHHHHHHHh
Q psy14500 651 LKISKAALKKISN 663 (938)
Q Consensus 651 l~~~~~~~~~L~~ 663 (938)
-.+++.-+..|+.
T Consensus 317 ~~LT~~d~~eL~~ 329 (439)
T KOG0739|consen 317 HVLTEQDFKELAR 329 (439)
T ss_pred cccchhhHHHHHh
Confidence 3456666666665
No 265
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.44 E-value=1.8e-12 Score=145.82 Aligned_cols=199 Identities=20% Similarity=0.333 Sum_probs=126.6
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 505 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 505 (938)
.+.++||+.+++.+...+...+. .+.+||+||||+|||++|+++++.+......- ...|....+...+ .
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~~--------~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~--~ 81 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGRI--------AHAYLFSGPRGTGKTSIARIFAKALNCQNGPD-GEPCNECESCKEI--N 81 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCCCHHHHHH--h
Confidence 35689999999999998875432 24689999999999999999999985431110 0011110000000 0
Q ss_pred cCCCCCC--------ccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEE
Q psy14500 506 IGAPPGY--------IGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTII 573 (938)
Q Consensus 506 ~g~~~~~--------~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 573 (938)
.|..+.+ .+.+..+.+...+.. +++.||+|||+|.++...++.|++.+++ +..++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~-----------~~~~~~l 150 (355)
T TIGR02397 82 SGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE-----------PPEHVVF 150 (355)
T ss_pred cCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC-----------CccceeE
Confidence 0111110 111111223333322 3357999999999999999999999986 3456778
Q ss_pred EEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEE
Q psy14500 574 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKI 653 (938)
Q Consensus 574 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~ 653 (938)
|++|+... .+.+.+.+|+ ..+.|+|++.+++.+++...+. ..+ +.+
T Consensus 151 Il~~~~~~------------------------~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~-------~~g--~~i 196 (355)
T TIGR02397 151 ILATTEPH------------------------KIPATILSRC-QRFDFKRIPLEDIVERLKKILD-------KEG--IKI 196 (355)
T ss_pred EEEeCCHH------------------------HHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHH-------HcC--CCC
Confidence 88776421 2446788999 5899999999999988665553 345 568
Q ss_pred cHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 654 SKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 654 ~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+++++++|+... -||+......++++.
T Consensus 197 ~~~a~~~l~~~~------~g~~~~a~~~lekl~ 223 (355)
T TIGR02397 197 EDEALELIARAA------DGSLRDALSLLDQLI 223 (355)
T ss_pred CHHHHHHHHHHc------CCChHHHHHHHHHHH
Confidence 899999998733 244444433444444
No 266
>PHA02244 ATPase-like protein
Probab=99.44 E-value=6.7e-12 Score=134.96 Aligned_cols=169 Identities=12% Similarity=0.156 Sum_probs=112.7
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 505 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 505 (938)
+...+|+...+......+.++... ..++||+||||||||++|++||..+ +.+++.++. +.. ...+
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~-------~~PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~--l~d---~~~L 159 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNA-------NIPVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNA--IMD---EFEL 159 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhc-------CCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec--ChH---HHhh
Confidence 344566666665555555433211 1269999999999999999999997 778888873 221 2233
Q ss_pred cCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 506 IGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 506 ~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
.|... ..|.-..+.+...+ ..+++|||||++.++++++..|..+++++.+...++......++.+|+|+|.....+.
T Consensus 160 ~G~i~-~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~ 236 (383)
T PHA02244 160 KGFID-ANGKFHETPFYEAF--KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGAD 236 (383)
T ss_pred ccccc-ccccccchHHHHHh--hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcc
Confidence 33211 11111112233333 4467999999999999999999999998877766666556688999999998433221
Q ss_pred hhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCH
Q psy14500 586 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR 626 (938)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~ 626 (938)
..+.. .+.+.+++++|| .+|.|..+++
T Consensus 237 ~~y~G-------------~k~L~~AllDRF-v~I~~dyp~~ 263 (383)
T PHA02244 237 HIYVA-------------RNKIDGATLDRF-APIEFDYDEK 263 (383)
T ss_pred cccCC-------------CcccCHHHHhhc-EEeeCCCCcH
Confidence 11100 245789999999 5888888874
No 267
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=9.4e-13 Score=142.85 Aligned_cols=166 Identities=21% Similarity=0.350 Sum_probs=113.5
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEeccccccchhhh-
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSEFIEKHSI- 502 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~~~~~~~~- 502 (938)
.+.|+||+.+++.+..++...+.. +.+||+||+|+||+++|.++|+.++..... .....+.....++-.
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~--------ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~ 74 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIA--------PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLW 74 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCC--------ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEE
Confidence 467899999999999999866532 479999999999999999999998654310 000001111110000
Q ss_pred -h---hhcC---------------CCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCcee
Q psy14500 503 -S---RLIG---------------APPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLT 559 (938)
Q Consensus 503 -~---~l~g---------------~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~ 559 (938)
. ..-| ...+.++.+..+.+...+.. +.+.|++||++|+|+...+|+||+.||+
T Consensus 75 i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE---- 150 (314)
T PRK07399 75 VEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE---- 150 (314)
T ss_pred EeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC----
Confidence 0 0001 00111222233444444533 4578999999999999999999999997
Q ss_pred cCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHH
Q psy14500 560 DNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 636 (938)
Q Consensus 560 ~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~ 636 (938)
+. +++||++|+.. ..+.|.+.+|| .+++|+|++.+++.+++...
T Consensus 151 -------Pp-~~~fILi~~~~------------------------~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 151 -------PG-NGTLILIAPSP------------------------ESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred -------CC-CCeEEEEECCh------------------------HhCcHHHHhhc-eEEecCCCCHHHHHHHHHHh
Confidence 44 67788887743 24678999999 59999999999998886643
No 268
>PRK08727 hypothetical protein; Validated
Probab=99.44 E-value=9.3e-12 Score=130.20 Aligned_cols=189 Identities=15% Similarity=0.193 Sum_probs=125.3
Q ss_pred CCCCccccH-HHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccch
Q psy14500 29 KLDPVIGRD-DEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGE 107 (938)
Q Consensus 29 ~~~~lvG~~-~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~ 107 (938)
+|+.+++.+ ..+..+...........++|+||+|||||+|+++++..+... +.....++.....
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~~~~-------- 81 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQAAA-------- 81 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHHHhh--------
Confidence 788887655 344444443333444569999999999999999999887543 3344445543322
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHHHHcccc
Q psy14500 108 FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ 187 (938)
Q Consensus 108 ~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~ 187 (938)
..+...+....... +|+|||++.+..... ......+.+....+. +..+|.|++... .....+++.+.|||.
T Consensus 82 --~~~~~~~~~l~~~d---lLiIDDi~~l~~~~~--~~~~lf~l~n~~~~~-~~~vI~ts~~~p-~~l~~~~~dL~SRl~ 152 (233)
T PRK08727 82 --GRLRDALEALEGRS---LVALDGLESIAGQRE--DEVALFDFHNRARAA-GITLLYTARQMP-DGLALVLPDLRSRLA 152 (233)
T ss_pred --hhHHHHHHHHhcCC---EEEEeCcccccCChH--HHHHHHHHHHHHHHc-CCeEEEECCCCh-hhhhhhhHHHHHHHh
Confidence 12444555554333 999999998854321 111222222222233 355666666433 123346899999963
Q ss_pred ---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHH
Q psy14500 188 ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 251 (938)
Q Consensus 188 ---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 251 (938)
.+.|++|+.+++..|++..+.. .++.++++++.+++..+.|.. +.+..+++...
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~----~~l~l~~e~~~~La~~~~rd~------r~~l~~L~~l~ 209 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQR----RGLALDEAAIDWLLTHGEREL------AGLVALLDRLD 209 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCCH------HHHHHHHHHHH
Confidence 5899999999999999986654 478999999999999998888 77877777654
No 269
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.44 E-value=4.5e-12 Score=146.19 Aligned_cols=200 Identities=15% Similarity=0.310 Sum_probs=128.9
Q ss_pred CCCCcc-ccHH--HHHHHHHHHhcC--CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14500 29 KLDPVI-GRDD--EIRRAIQVLQRR--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 103 (938)
Q Consensus 29 ~~~~lv-G~~~--~~~~l~~~l~~~--~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~ 103 (938)
+|+.++ |... ++..+..+...+ ..++++|+||||||||+|++++++.+.... | +..++.+++..+.. .
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~----~~~v~yi~~~~~~~--~ 192 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-P----NAKVVYVTSEKFTN--D 192 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHH--H
Confidence 788854 5433 344444444332 225689999999999999999999885421 1 45677777765531 1
Q ss_pred ccchHHH-HHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHHH
Q psy14500 104 YRGEFED-RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAF 182 (938)
Q Consensus 104 ~~g~~~~-~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al 182 (938)
+...... ....+...... ..+|+|||++.+.+... ...++...+....+.+..++|+++.++. ....+++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~---~dlLiiDDi~~l~~~~~--~~~~l~~~~n~l~~~~~~iiits~~~p~--~l~~l~~~l 265 (450)
T PRK00149 193 FVNALRNNTMEEFKEKYRS---VDVLLIDDIQFLAGKER--TQEEFFHTFNALHEAGKQIVLTSDRPPK--ELPGLEERL 265 (450)
T ss_pred HHHHHHcCcHHHHHHHHhc---CCEEEEehhhhhcCCHH--HHHHHHHHHHHHHHCCCcEEEECCCCHH--HHHHHHHHH
Confidence 1111111 11222233332 34999999999854321 0123444444555666656665555443 122377999
Q ss_pred Hcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHH
Q psy14500 183 ERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 183 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 252 (938)
.+||. .+.|.+|+.+++..|++..+.. .++.+++++++.++..+.+.+ +.....+.....
T Consensus 266 ~SRl~~gl~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~~~------R~l~~~l~~l~~ 328 (450)
T PRK00149 266 RSRFEWGLTVDIEPPDLETRIAILKKKAEE----EGIDLPDEVLEFIAKNITSNV------RELEGALNRLIA 328 (450)
T ss_pred HhHhcCCeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHcCcCCCH------HHHHHHHHHHHH
Confidence 99995 4999999999999999988775 478899999999999988776 665555555443
No 270
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.43 E-value=5.5e-12 Score=143.22 Aligned_cols=198 Identities=15% Similarity=0.190 Sum_probs=122.8
Q ss_pred CCCCCcc-ccHHHH--HHHHHHHhc------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14500 28 GKLDPVI-GRDDEI--RRAIQVLQR------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 98 (938)
Q Consensus 28 ~~~~~lv-G~~~~~--~~l~~~l~~------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l 98 (938)
-+|+.+| |....+ ..+..+... ...++++|+||+|+|||+|++++++.+... +..++.++...+
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f 180 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELF 180 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHH
Confidence 3888886 544332 333333321 123568999999999999999999988543 456666776544
Q ss_pred hcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhc
Q psy14500 99 LAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEK 178 (938)
Q Consensus 99 ~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~l 178 (938)
.. .+.......-...|.... ....+|+|||++.+.+... ...++...+....+.+..+++++++.+. ....+
T Consensus 181 ~~--~~~~~l~~~~~~~f~~~~--~~~dvLiIDDiq~l~~k~~--~qeelf~l~N~l~~~~k~IIlts~~~p~--~l~~l 252 (445)
T PRK12422 181 TE--HLVSAIRSGEMQRFRQFY--RNVDALFIEDIEVFSGKGA--TQEEFFHTFNSLHTEGKLIVISSTCAPQ--DLKAM 252 (445)
T ss_pred HH--HHHHHHhcchHHHHHHHc--ccCCEEEEcchhhhcCChh--hHHHHHHHHHHHHHCCCcEEEecCCCHH--HHhhh
Confidence 31 111111000011222221 2234999999999854321 1122333333344555555555544333 12357
Q ss_pred CHHHHcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHH
Q psy14500 179 DAAFERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 179 d~al~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 250 (938)
++.+.+||. .+.+++|+.+++..||+..++. .++.++++++..++....+.+ +.....+...
T Consensus 253 ~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~----~~~~l~~evl~~la~~~~~di------r~L~g~l~~l 317 (445)
T PRK12422 253 EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA----LSIRIEETALDFLIEALSSNV------KSLLHALTLL 317 (445)
T ss_pred HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH------HHHHHHHHHH
Confidence 899999995 4999999999999999987765 478999999999999877666 5555555544
No 271
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.43 E-value=2.7e-12 Score=133.17 Aligned_cols=102 Identities=24% Similarity=0.408 Sum_probs=79.7
Q ss_pred CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccCh
Q psy14500 530 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 609 (938)
Q Consensus 530 ~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 609 (938)
++||||||++.++-+.+..|.+.||+ + --.++|++||.|...+...-.. --..++.
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEs-----------e-~aPIii~AtNRG~~kiRGTd~~------------sPhGIP~ 347 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALES-----------E-LAPIIILATNRGMTKIRGTDIE------------SPHGIPL 347 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhc-----------c-cCcEEEEEcCCceeeecccCCc------------CCCCCCH
Confidence 59999999999999999999999996 2 2347889999876554321000 0135788
Q ss_pred HHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 610 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 610 ~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
+|++|+ .+|...|++++++++|+.... +..+ +.++++++++|...+
T Consensus 348 DlLDRl-lII~t~py~~~EireIi~iRa-------~ee~--i~l~~~Ale~L~~ig 393 (450)
T COG1224 348 DLLDRL-LIISTRPYSREEIREIIRIRA-------KEED--IELSDDALEYLTDIG 393 (450)
T ss_pred hhhhhe-eEEecCCCCHHHHHHHHHHhh-------hhhc--cccCHHHHHHHHhhc
Confidence 999999 799999999999999966544 3333 889999999999855
No 272
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.42 E-value=8.5e-12 Score=130.71 Aligned_cols=182 Identities=14% Similarity=0.154 Sum_probs=121.2
Q ss_pred hcCCCCCcc-cc-HHHHHHHHHHHh-cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14500 26 RLGKLDPVI-GR-DDEIRRAIQVLQ-RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 102 (938)
Q Consensus 26 ~~~~~~~lv-G~-~~~~~~l~~~l~-~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~ 102 (938)
+|.+|++++ |. +..+..+..+.. .....+++|+||+|||||+||+++++..... +..++.+++.....
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~-- 83 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLL-- 83 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHH--
Confidence 456788887 33 344555555443 2445689999999999999999999987443 45666677654321
Q ss_pred cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhc----cCCceEEEEecChhHHHHhhhc
Q psy14500 103 KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEK 178 (938)
Q Consensus 103 ~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l----~~~~i~vI~~tn~~~~~~~~~l 178 (938)
.+... ....+|+|||+|.+.. ..+..|...+ +.+..++|.+++..+ ....+
T Consensus 84 ------------~~~~~---~~~~~liiDdi~~l~~--------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~--~~~~l 138 (227)
T PRK08903 84 ------------AFDFD---PEAELYAVDDVERLDD--------AQQIALFNLFNRVRAHGQGALLVAGPAAP--LALPL 138 (227)
T ss_pred ------------HHhhc---ccCCEEEEeChhhcCc--------hHHHHHHHHHHHHHHcCCcEEEEeCCCCH--HhCCC
Confidence 01111 1234899999998733 1223344444 445544555555433 12245
Q ss_pred CHHHHcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHH
Q psy14500 179 DAAFERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 251 (938)
Q Consensus 179 d~al~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 251 (938)
.+.+.+||. .+.+++|+.+++..+++.+... .++.+++++++.++..+.+.+ +....+++...
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~----~~v~l~~~al~~L~~~~~gn~------~~l~~~l~~l~ 204 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKAAAAE----RGLQLADEVPDYLLTHFRRDM------PSLMALLDALD 204 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCCH------HHHHHHHHHHH
Confidence 688999983 5999999999888888766554 579999999999999877766 77777776643
No 273
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.42 E-value=2.2e-12 Score=136.74 Aligned_cols=102 Identities=23% Similarity=0.376 Sum_probs=68.6
Q ss_pred CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccCh
Q psy14500 530 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 609 (938)
Q Consensus 530 ~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 609 (938)
+|||||||++.++-+.+..|.+.||. + -..++|++||.+...+...-.. .-..++.
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs-----------~-~sPiiIlATNRg~~~irGt~~~------------sphGiP~ 334 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALES-----------E-LSPIIILATNRGITKIRGTDII------------SPHGIPL 334 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTS-----------T-T--EEEEEES-SEEE-BTTS-E------------EETT--H
T ss_pred cceEEecchhhccHHHHHHHHHHhcC-----------C-CCcEEEEecCceeeeccCccCc------------CCCCCCc
Confidence 59999999999999999999999995 2 2347889999876544321000 0235788
Q ss_pred HHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 610 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 610 ~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
+|++|+ .+|+..|++.+++.+|+.. +++..+ +.+++++++.|...+
T Consensus 335 DlLDRl-lII~t~py~~~ei~~Il~i-------R~~~E~--v~i~~~al~~L~~ig 380 (398)
T PF06068_consen 335 DLLDRL-LIIRTKPYSEEEIKQILKI-------RAKEED--VEISEDALDLLTKIG 380 (398)
T ss_dssp HHHTTE-EEEEE----HHHHHHHHHH-------HHHHCT----B-HHHHHHHHHHH
T ss_pred chHhhc-EEEECCCCCHHHHHHHHHh-------hhhhhc--CcCCHHHHHHHHHHh
Confidence 999999 7999999999999999544 445555 889999999998854
No 274
>KOG0991|consensus
Probab=99.42 E-value=5.1e-13 Score=130.33 Aligned_cols=185 Identities=16% Similarity=0.254 Sum_probs=130.2
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC--CceEEeccccccchhhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 504 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 504 (938)
.+++|.++.+..+....+... .++++|.||||||||+.+.++|+.+.|.. ..+..+|.++-.
T Consensus 27 ~dIVGNe~tv~rl~via~~gn---------mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR------- 90 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN---------MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER------- 90 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC---------CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc-------
Confidence 568999999999998887443 23799999999999999999999997642 234444444322
Q ss_pred hcCCCCCCcccccc-chhHHHH----H--hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEec
Q psy14500 505 LIGAPPGYIGYEEG-GYLTEIV----R--RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 577 (938)
Q Consensus 505 l~g~~~~~~g~~~~-~~l~~~~----~--~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 577 (938)
|.+.. ..+..+. . .+...|+++||+|+|...+|.+|...||- ..+.+.|.+++
T Consensus 91 ---------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEi-----------yS~ttRFalaC 150 (333)
T KOG0991|consen 91 ---------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEI-----------YSNTTRFALAC 150 (333)
T ss_pred ---------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHH-----------Hcccchhhhhh
Confidence 21111 1121111 1 13457999999999999999999999983 55667899999
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHH
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 657 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 657 (938)
|... ++-.++.+|| .++.|..++..++..- +.+..+..+ +.++++.
T Consensus 151 N~s~------------------------KIiEPIQSRC-AiLRysklsd~qiL~R-------l~~v~k~Ek--v~yt~dg 196 (333)
T KOG0991|consen 151 NQSE------------------------KIIEPIQSRC-AILRYSKLSDQQILKR-------LLEVAKAEK--VNYTDDG 196 (333)
T ss_pred cchh------------------------hhhhhHHhhh-HhhhhcccCHHHHHHH-------HHHHHHHhC--CCCCcch
Confidence 9633 3556789999 6999999998776554 333334344 6778888
Q ss_pred HHHHHhhcccccccccccccchHHHHHHHH
Q psy14500 658 LKKISNIGFDLIYGARDVHGCKKSLSILLK 687 (938)
Q Consensus 658 ~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~ 687 (938)
++.+.- -.-||++..++-|+.-+.
T Consensus 197 Leaiif------ta~GDMRQalNnLQst~~ 220 (333)
T KOG0991|consen 197 LEAIIF------TAQGDMRQALNNLQSTVN 220 (333)
T ss_pred HHHhhh------hccchHHHHHHHHHHHhc
Confidence 888765 224777777666666553
No 275
>KOG0742|consensus
Probab=99.42 E-value=2.6e-10 Score=120.13 Aligned_cols=147 Identities=20% Similarity=0.329 Sum_probs=102.0
Q ss_pred CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhC
Q psy14500 449 GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK 528 (938)
Q Consensus 449 ~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~ 528 (938)
+.+....|..++|||||||||||++|+-||... +..+......+.. +-|-.+......++++.+.+
T Consensus 376 NTK~h~apfRNilfyGPPGTGKTm~ArelAr~S---GlDYA~mTGGDVA-----------PlG~qaVTkiH~lFDWakkS 441 (630)
T KOG0742|consen 376 NTKKHQAPFRNILFYGPPGTGKTMFARELARHS---GLDYAIMTGGDVA-----------PLGAQAVTKIHKLFDWAKKS 441 (630)
T ss_pred ccccccchhhheeeeCCCCCCchHHHHHHHhhc---CCceehhcCCCcc-----------ccchHHHHHHHHHHHHHhhc
Confidence 333445677799999999999999999999887 4443322222221 12233344456777877666
Q ss_pred CC-EEEEEccccc---------cCHHHHHHHHHhhc-CCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHH
Q psy14500 529 PY-SLILLDEIEK---------ANSDVFNILLQILD-DGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKL 597 (938)
Q Consensus 529 ~~-~vl~lDEid~---------~~~~~~~~Ll~~le-~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~ 597 (938)
.. -+|||||+|. |+.....+|..+|= .|. ...+.+++++||.+.+
T Consensus 442 ~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd---------qSrdivLvlAtNrpgd--------------- 497 (630)
T KOG0742|consen 442 RRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---------QSRDIVLVLATNRPGD--------------- 497 (630)
T ss_pred ccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc---------cccceEEEeccCCccc---------------
Confidence 54 4789999974 44444444433331 121 3356788999998654
Q ss_pred HHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHH
Q psy14500 598 AVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKN 642 (938)
Q Consensus 598 ~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~ 642 (938)
|+..+-+|||.+|.|+-+.+++..+++..+++++..
T Consensus 498 ---------lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~ 533 (630)
T KOG0742|consen 498 ---------LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYIL 533 (630)
T ss_pred ---------hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhc
Confidence 778888999999999999999999999999987653
No 276
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.41 E-value=2.5e-12 Score=139.62 Aligned_cols=222 Identities=15% Similarity=0.177 Sum_probs=133.8
Q ss_pred cCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCC----CCCCc---CC------------
Q psy14500 27 LGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGE----VPNSL---LS------------ 87 (938)
Q Consensus 27 ~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~----~p~~~---~~------------ 87 (938)
|..|.+++||+++++.++..+-....+|+||.|+||||||++|++++..++.-. +|... ..
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTM 83 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcc
Confidence 567899999999999888655434457999999999999999999999884311 10000 00
Q ss_pred ----CeEEEEehhhhhcCccccch--HHHHH--------HHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhh
Q psy14500 88 ----KKILLLDIALLLAGTKYRGE--FEDRL--------KKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLK 153 (938)
Q Consensus 88 ----~~~~~~~~~~l~~~~~~~g~--~~~~l--------~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~ 153 (938)
.++..+..+ .......|. ++..+ ...+..+ + ..+|||||++.+. ...++.|.
T Consensus 84 ~~~~~p~~~~p~~--~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A---~-~GiL~lDEInrl~--------~~~q~~Ll 149 (334)
T PRK13407 84 IERPTPVVDLPLG--VTEDRVVGALDIERALTRGEKAFEPGLLARA---N-RGYLYIDEVNLLE--------DHIVDLLL 149 (334)
T ss_pred cccCCccccCCCC--CCcceeecchhhhhhhhcCCeeecCCceEEc---C-CCeEEecChHhCC--------HHHHHHHH
Confidence 011101000 000001111 11010 0111111 1 2389999999983 46677788
Q ss_pred hhccCC---------------ceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCH-HHHHHHHHhhhhh-------
Q psy14500 154 PELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDI-EETISILRGLQKK------- 209 (938)
Q Consensus 154 ~~l~~~---------------~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~-~e~~~il~~~~~~------- 209 (938)
..|+.+ .+++|+++|+.+ ..+.+++++||.. +.+++|+. +++.+|++.....
T Consensus 150 e~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e----~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~ 225 (334)
T PRK13407 150 DVAQSGENVVEREGLSIRHPARFVLVGSGNPEE----GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAF 225 (334)
T ss_pred HHHHcCCeEEEECCeEEecCCCEEEEecCCccc----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhh
Confidence 877644 367788888754 2589999999985 88888866 8888888653210
Q ss_pred ------------------hhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHHHhh--cCchhHHHHH
Q psy14500 210 ------------------YEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEI--DSKPEIMDKL 268 (938)
Q Consensus 210 ------------------~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~--~~~p~~l~~~ 268 (938)
...-..+.+++.++.+++.++...- ...|+..+.++..+.+.+.... .-.|+++..+
T Consensus 226 ~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~--~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~ 302 (334)
T PRK13407 226 MAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALG--SDGLRGELTLLRAARALAAFEGAEAVGRSHLRSV 302 (334)
T ss_pred hccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHC--CCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHH
Confidence 0111346678888888887765522 2346666666666665555443 2355555433
No 277
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=9.5e-12 Score=142.94 Aligned_cols=188 Identities=14% Similarity=0.213 Sum_probs=118.8
Q ss_pred CCCCcc-ccHH--HHHHHHHHHhcC--CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14500 29 KLDPVI-GRDD--EIRRAIQVLQRR--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 103 (938)
Q Consensus 29 ~~~~lv-G~~~--~~~~l~~~l~~~--~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~ 103 (938)
+|+.+| |... +...+..++... ..+.++|||++|+|||+|++++++.+.... .+..++.+++..+.. .
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yitaeef~~--e 358 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVSSEEFTN--E 358 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHH--H
Confidence 788886 4333 233334443332 224589999999999999999999874321 155677777766542 1
Q ss_pred ccchHHH-HHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHHH
Q psy14500 104 YRGEFED-RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAF 182 (938)
Q Consensus 104 ~~g~~~~-~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al 182 (938)
+...... .+..+...... ..+|+|||++.+...... ...+.+.+....+.++-++| |++...- ....+++.|
T Consensus 359 l~~al~~~~~~~f~~~y~~---~DLLlIDDIq~l~gke~t--qeeLF~l~N~l~e~gk~III-TSd~~P~-eL~~l~~rL 431 (617)
T PRK14086 359 FINSIRDGKGDSFRRRYRE---MDILLVDDIQFLEDKEST--QEEFFHTFNTLHNANKQIVL-SSDRPPK-QLVTLEDRL 431 (617)
T ss_pred HHHHHHhccHHHHHHHhhc---CCEEEEehhccccCCHHH--HHHHHHHHHHHHhcCCCEEE-ecCCChH-hhhhccHHH
Confidence 1111111 11122222222 339999999988543211 12344555555565554444 4444321 123578999
Q ss_pred Hcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 183 ERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 183 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
.+||. .+.+..|+.+.|..||+..+.. .++.++++++.+++....+.+
T Consensus 432 ~SRf~~GLvv~I~~PD~EtR~aIL~kka~~----r~l~l~~eVi~yLa~r~~rnv 482 (617)
T PRK14086 432 RNRFEWGLITDVQPPELETRIAILRKKAVQ----EQLNAPPEVLEFIASRISRNI 482 (617)
T ss_pred HhhhhcCceEEcCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhccCCH
Confidence 99996 3899999999999999987765 588999999999999877655
No 278
>PRK08727 hypothetical protein; Validated
Probab=99.41 E-value=4.1e-12 Score=132.92 Aligned_cols=163 Identities=19% Similarity=0.194 Sum_probs=116.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
.++|+||+|||||++++++++.+...+....++.+.++.... ......+. ...+|+|||+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~------------------~~~~~~l~--~~dlLiIDDi 102 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRL------------------RDALEALE--GRSLVALDGL 102 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhH------------------HHHHHHHh--cCCEEEEeCc
Confidence 599999999999999999999987767676777665433210 01112222 2359999999
Q ss_pred cccC--HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcC-
Q psy14500 539 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI- 615 (938)
Q Consensus 539 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~- 615 (938)
+.+. +..+..|+.+++.. ......+|+|+|.++..+.. +.+++.+|+
T Consensus 103 ~~l~~~~~~~~~lf~l~n~~----------~~~~~~vI~ts~~~p~~l~~--------------------~~~dL~SRl~ 152 (233)
T PRK08727 103 ESIAGQREDEVALFDFHNRA----------RAAGITLLYTARQMPDGLAL--------------------VLPDLRSRLA 152 (233)
T ss_pred ccccCChHHHHHHHHHHHHH----------HHcCCeEEEECCCChhhhhh--------------------hhHHHHHHHh
Confidence 9885 45567788777641 11233488889887765532 568899995
Q ss_pred -CeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 616 -DDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 616 -~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
..++.|+|++.+++.+|+.+.... ++ +.++++++++|++.. -||+.+..+.++++.
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~-------~~--l~l~~e~~~~La~~~------~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQR-------RG--LALDEAAIDWLLTHG------ERELAGLVALLDRLD 209 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhC------CCCHHHHHHHHHHHH
Confidence 358999999999999997764432 24 789999999999842 378888766676655
No 279
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.40 E-value=1.3e-12 Score=146.74 Aligned_cols=163 Identities=25% Similarity=0.415 Sum_probs=111.1
Q ss_pred ccccChHHHHHHHHHHHHhhh--------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSR--------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 498 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~--------~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 498 (938)
++|.|.+..++.+..++.... .++ .+...+||+||||||||++|+++|+.+ ..+++.+..+++..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi----~~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL~~ 255 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGI----KPPKGVILYGPPGTGKTLLAKAVANET---SATFLRVVGSELIQ 255 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCC----CCCcEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchhhh
Confidence 467899999999988886421 122 222369999999999999999999988 66788887766543
Q ss_pred hhhhhhhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCce
Q psy14500 499 KHSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 565 (938)
Q Consensus 499 ~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 565 (938)
. |.|... .+.++.......++||||||||.+. ..++..++.+|..- + |.
T Consensus 256 k------------~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~L---d--g~- 317 (438)
T PTZ00361 256 K------------YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQL---D--GF- 317 (438)
T ss_pred h------------hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHH---h--hh-
Confidence 2 333332 1334444555667999999998753 23455555554320 0 00
Q ss_pred eecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHHH
Q psy14500 566 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLN 638 (938)
Q Consensus 566 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l~ 638 (938)
....++.+|+|||... .+++.++ +|||..|.|++++.++..+|+...+.
T Consensus 318 ~~~~~V~VI~ATNr~d------------------------~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 318 DSRGDVKVIMATNRIE------------------------SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred cccCCeEEEEecCChH------------------------HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 0124678899999632 2566666 59999999999999999999776543
No 280
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.40 E-value=3.5e-12 Score=152.67 Aligned_cols=178 Identities=17% Similarity=0.253 Sum_probs=125.5
Q ss_pred CccccHHHHHHHHHHHhc---------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc--
Q psy14500 32 PVIGRDDEIRRAIQVLQR---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-- 100 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~---------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~-- 100 (938)
.++||+++++.+...+.. .+..++||+||||||||++|+++|+.+ +.+++.++++....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~~ 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMERH 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCCcEEeechhhcccc
Confidence 689999999999998762 223468999999999999999999998 55677777655421
Q ss_pred ------C--ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------
Q psy14500 101 ------G--TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------- 159 (938)
Q Consensus 101 ------~--~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 159 (938)
| ..|.|.. ....+.++....+.+||||||+|.+. .++++.|+++++.|
T Consensus 529 ~~~~LiG~~~gyvg~~---~~g~L~~~v~~~p~sVlllDEieka~--------~~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 529 TVSRLIGAPPGYVGFD---QGGLLTDAVIKHPHAVLLLDEIEKAH--------PDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred cHHHHcCCCCCccccc---ccchHHHHHHhCCCcEEEeccHhhhh--------HHHHHHHHHHHhcCeeecCCCceecCC
Confidence 1 1122211 11233333333446799999999994 46888999988754
Q ss_pred ceEEEEecChhHH---H-----------------HhhhcCHHHHcccc-eEEeeCCCHHHHHHHHHhhhhhhhc-----c
Q psy14500 160 ELHCIGATTLNEY---R-----------------QYIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEV-----H 213 (938)
Q Consensus 160 ~i~vI~~tn~~~~---~-----------------~~~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~-----~ 213 (938)
++++|+|||...- . -...+.|.|..|++ +|.|++++.++...|+...+.++.. .
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4568999883200 0 01136799999998 5999999999999998766554322 2
Q ss_pred cCCCCCHHHHHHHHHhh
Q psy14500 214 HGVEITDPAIVAASELS 230 (938)
Q Consensus 214 ~~~~i~~~~l~~~~~~s 230 (938)
..+.+++.+++.++...
T Consensus 678 i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 678 VSLEVSQEARDWLAEKG 694 (758)
T ss_pred CCceECHHHHHHHHHhC
Confidence 34678999999998754
No 281
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.40 E-value=3.5e-12 Score=138.48 Aligned_cols=205 Identities=17% Similarity=0.245 Sum_probs=123.2
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc----CCC--ceEEec----cccc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----NEE--SIIRID----MSEF 496 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~----~~~--~~~~~~----~~~~ 496 (938)
..|+||+.+++.+..++-... .+++||.|+||||||++|++++..+.. .+. .+..+. +.+.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~ 78 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHV 78 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccc
Confidence 468899999998886543211 137999999999999999999999831 011 111111 1000
Q ss_pred cc---------------hhhhhhhcCCCCC----CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCc
Q psy14500 497 IE---------------KHSISRLIGAPPG----YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGR 557 (938)
Q Consensus 497 ~~---------------~~~~~~l~g~~~~----~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~ 557 (938)
.. ..+..+++|.-.- ..|. ...-.+.+..+.+++||+|||+.+++.+|+.|++.|++|.
T Consensus 79 ~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~--~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~ 156 (334)
T PRK13407 79 SSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGE--KAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGE 156 (334)
T ss_pred cCCcccccCCccccCCCCCCcceeecchhhhhhhhcCC--eeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCC
Confidence 00 0011123331000 0000 0011223345667899999999999999999999999988
Q ss_pred eec-CCCceeec-CCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCH-HHHHHHHH
Q psy14500 558 LTD-NRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KNILSIAN 634 (938)
Q Consensus 558 ~~~-~~g~~~~~-~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~-e~~~~i~~ 634 (938)
++. ..|..... .++++|+|+|... ..+++.+++||...+.+.++.. ++..+|+.
T Consensus 157 v~v~r~G~~~~~p~rfiviAt~NP~e-----------------------~~l~~aLldRF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 157 NVVEREGLSIRHPARFVLVGSGNPEE-----------------------GELRPQLLDRFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred eEEEECCeEEecCCCEEEEecCCccc-----------------------CCCCHHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence 542 22333333 4567777777421 2478899999988888887766 67677776
Q ss_pred HHHHH------HH-----------HHH---HccCCeEEEcHHHHHHHHhhc
Q psy14500 635 IQLNI------LK-----------NKL---LKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 635 ~~l~~------~~-----------~~~---~~~~~~l~~~~~~~~~L~~~~ 665 (938)
..... +. +.+ +..--.+.+++++++++++..
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~ 264 (334)
T PRK13407 214 RRDAYDADHDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALC 264 (334)
T ss_pred HhhcccccchhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHH
Confidence 53221 10 011 111123667888888887754
No 282
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.40 E-value=6.3e-12 Score=139.31 Aligned_cols=185 Identities=20% Similarity=0.354 Sum_probs=125.1
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC--ceEEeccccccchhhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSEFIEKHSISR 504 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~ 504 (938)
++++|++++++.+...++... .++++|+||||||||++|+++++.+++.+. .++.+++++........
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~---------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~- 86 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN---------MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVIR- 86 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC---------CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHHH-
Confidence 347799999999999886432 126899999999999999999999865432 33333332211100000
Q ss_pred hcCCCCCCccccccchhHHHHHh-----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCC
Q psy14500 505 LIGAPPGYIGYEEGGYLTEIVRR-----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 579 (938)
Q Consensus 505 l~g~~~~~~g~~~~~~l~~~~~~-----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 579 (938)
..+...... .+..+|+|||++.++...++.|+.+++. ...++.+|+++|.
T Consensus 87 --------------~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~-----------~~~~~~lIl~~~~ 141 (319)
T PRK00440 87 --------------NKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEM-----------YSQNTRFILSCNY 141 (319)
T ss_pred --------------HHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhc-----------CCCCCeEEEEeCC
Confidence 111111111 2346999999999999999999999985 2344677888875
Q ss_pred CchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHH
Q psy14500 580 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 659 (938)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 659 (938)
.. .+.+++.+|+. ++.|.|++.+++..++...+. ..+ +.+++++++
T Consensus 142 ~~------------------------~l~~~l~sr~~-~~~~~~l~~~ei~~~l~~~~~-------~~~--~~i~~~al~ 187 (319)
T PRK00440 142 SS------------------------KIIDPIQSRCA-VFRFSPLKKEAVAERLRYIAE-------NEG--IEITDDALE 187 (319)
T ss_pred cc------------------------ccchhHHHHhh-eeeeCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHH
Confidence 32 24566888984 799999999999888665443 334 568999999
Q ss_pred HHHhhcccccccccccccchHHHHHHH
Q psy14500 660 KISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 660 ~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+|+... -||+......++.+.
T Consensus 188 ~l~~~~------~gd~r~~~~~l~~~~ 208 (319)
T PRK00440 188 AIYYVS------EGDMRKAINALQAAA 208 (319)
T ss_pred HHHHHc------CCCHHHHHHHHHHHH
Confidence 998843 356665544455433
No 283
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.40 E-value=2.6e-12 Score=134.68 Aligned_cols=185 Identities=13% Similarity=0.177 Sum_probs=125.9
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCC
Q psy14500 431 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP 510 (938)
Q Consensus 431 Gq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 510 (938)
++..+++.+...+... ...+++|+||||||||++|+++++.+...+.+++.++|+.+.... .
T Consensus 21 ~~~~~~~~l~~~~~~~---------~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~------- 82 (226)
T TIGR03420 21 GNAELLAALRQLAAGK---------GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--P------- 82 (226)
T ss_pred CcHHHHHHHHHHHhcC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--H-------
Confidence 3555666666665311 123799999999999999999999987667788889988765321 0
Q ss_pred CCccccccchhHHHHHhCCCEEEEEccccccCHHH--HHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhh
Q psy14500 511 GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDV--FNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 588 (938)
Q Consensus 511 ~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~--~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~ 588 (938)
.+...+. ..++|+|||++.++... ++.|+.+++... ..+..+|+|++.....+
T Consensus 83 ---------~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~----------~~~~~iIits~~~~~~~---- 137 (226)
T TIGR03420 83 ---------EVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVR----------EAGGRLLIAGRAAPAQL---- 137 (226)
T ss_pred ---------HHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChHHC----
Confidence 0111122 23599999999998744 888888876411 11235777887644322
Q ss_pred cchHHHHHHHHHHHHhhccChHHhhcCC--eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcc
Q psy14500 589 KGDKEIIKLAVMNEVKIYFRPEFINRID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGF 666 (938)
Q Consensus 589 ~~~~~~~~~~~~~~l~~~~~~~l~~R~~--~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~ 666 (938)
....+.+.+|+. ..|.++|++.++...++...+. ..+ +.++++++++|+. +
T Consensus 138 ----------------~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~-------~~~--~~~~~~~l~~L~~--~ 190 (226)
T TIGR03420 138 ----------------PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA-------RRG--LQLPDEVADYLLR--H 190 (226)
T ss_pred ----------------CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHH--h
Confidence 112367888874 5899999999999888754332 223 6799999999988 2
Q ss_pred cccccccccccchHHHHHHH
Q psy14500 667 DLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 667 ~~~~~~~dl~~~~~~l~~~l 686 (938)
|..+++.+.++++.+..+.
T Consensus 191 -~~gn~r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 191 -GSRDMGSLMALLDALDRAS 209 (226)
T ss_pred -ccCCHHHHHHHHHHHHHHH
Confidence 6677888888855555433
No 284
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.40 E-value=2.8e-12 Score=139.30 Aligned_cols=176 Identities=17% Similarity=0.237 Sum_probs=112.9
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC----CCceEEeccccc-----
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN----EESIIRIDMSEF----- 496 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~----~~~~~~~~~~~~----- 496 (938)
+..|+||++++.++...+..... +.+||.||+|||||++|+++++.+... +.+|. +....
T Consensus 16 f~~ivGq~~~k~al~~~~~~p~~---------~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~--~~p~~p~~~~ 84 (350)
T CHL00081 16 FTAIVGQEEMKLALILNVIDPKI---------GGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN--SHPSDPELMS 84 (350)
T ss_pred HHHHhChHHHHHHHHHhccCCCC---------CeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC--CCCCChhhhc
Confidence 35689999999999888765432 379999999999999999999988421 12332 00000
Q ss_pred -------------------------cchhhhhhhcCCCC---CCccccccchhHHHHHhCCCEEEEEccccccCHHHHHH
Q psy14500 497 -------------------------IEKHSISRLIGAPP---GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNI 548 (938)
Q Consensus 497 -------------------------~~~~~~~~l~g~~~---~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~ 548 (938)
.......+++|.-. ...+. ....-.+.+..+.+++||+|||+.+++.+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g-~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~ 163 (350)
T CHL00081 85 DEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEG-VKAFEPGLLAKANRGILYVDEVNLLDDHLVDI 163 (350)
T ss_pred hhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcC-cccccCCeeeecCCCEEEecChHhCCHHHHHH
Confidence 00001112222100 00000 00001223456678999999999999999999
Q ss_pred HHHhhcCCceec-CCCceee-cCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCC-
Q psy14500 549 LLQILDDGRLTD-NRGRTIN-FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN- 625 (938)
Q Consensus 549 Ll~~le~g~~~~-~~g~~~~-~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~- 625 (938)
|+..|++|..+. ..|.... ..++++|+|.|.. ...|++++++||...+.+..++
T Consensus 164 LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~-----------------------eg~l~~~LldRf~l~i~l~~~~~ 220 (350)
T CHL00081 164 LLDSAASGWNTVEREGISIRHPARFVLVGSGNPE-----------------------EGELRPQLLDRFGMHAEIRTVKD 220 (350)
T ss_pred HHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcc-----------------------cCCCCHHHHHHhCceeecCCCCC
Confidence 999999876542 2243333 3456666666642 2348999999999899998887
Q ss_pred HHHHHHHHHHH
Q psy14500 626 RKNILSIANIQ 636 (938)
Q Consensus 626 ~e~~~~i~~~~ 636 (938)
.+...+|+.+.
T Consensus 221 ~~~e~~il~~~ 231 (350)
T CHL00081 221 PELRVKIVEQR 231 (350)
T ss_pred hHHHHHHHHhh
Confidence 47777777654
No 285
>KOG0726|consensus
Probab=99.39 E-value=8e-13 Score=132.96 Aligned_cols=160 Identities=23% Similarity=0.358 Sum_probs=118.0
Q ss_pred hccccChHHHHHHHHHHHHhhh--------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSR--------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~--------~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
..++-|.+..+..+.+.+...- .|.+.| ..++|||+||||||.||+++|+.. ...|+++-.+++.
T Consensus 184 y~diGGle~QiQEiKEsvELPLthPE~YeemGikpP----KGVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGseLi 256 (440)
T KOG0726|consen 184 YADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPP----KGVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSELI 256 (440)
T ss_pred hcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCC----CeeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHHHH
Confidence 3567788888888888885331 233333 359999999999999999999766 6778888777776
Q ss_pred chhhhhhhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCc
Q psy14500 498 EKHSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGR 564 (938)
Q Consensus 498 ~~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~ 564 (938)
.. |.|... .++++.......++|+||||||.+. .++|.++|.+|..-.-.+
T Consensus 257 Qk------------ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFd---- 320 (440)
T KOG0726|consen 257 QK------------YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD---- 320 (440)
T ss_pred HH------------HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcc----
Confidence 54 444433 2667777777788999999999765 478888888886411111
Q ss_pred eeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHH
Q psy14500 565 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIAN 634 (938)
Q Consensus 565 ~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~ 634 (938)
.-.++-+|++||.- ..++|.|+ +|||..|.|+.+++....+|+.
T Consensus 321 --srgDvKvimATnri------------------------e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~ 366 (440)
T KOG0726|consen 321 --SRGDVKVIMATNRI------------------------ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQ 366 (440)
T ss_pred --ccCCeEEEEecccc------------------------cccCHhhcCCCccccccccCCCchhhhceeEE
Confidence 13567799999962 24677777 6999999999999988888854
No 286
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.39 E-value=3.4e-12 Score=141.16 Aligned_cols=174 Identities=28% Similarity=0.351 Sum_probs=119.2
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
+..+...+.+.++|+++++..+..++.... ++||.||||||||++|+.+|+.+ +.+|.+++|....
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~-----------~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~l 80 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLAGG-----------HVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPDL 80 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHcCC-----------CEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCCC
Confidence 445566677789999999988888886443 79999999999999999999999 7899999998766
Q ss_pred chhhhhhhcCCCCCC--------ccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeec-
Q psy14500 498 EKHSISRLIGAPPGY--------IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINF- 568 (938)
Q Consensus 498 ~~~~~~~l~g~~~~~--------~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~- 568 (938)
...+ ++|...-. .-... +.++.... +|+++|||+++++.+|+.|+.+|++++++...-.....
T Consensus 81 ~p~d---~~G~~~~~~~~~~~~~~~~~~-gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~ 152 (329)
T COG0714 81 LPSD---LLGTYAYAALLLEPGEFRFVP-GPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLP 152 (329)
T ss_pred CHHH---hcCchhHhhhhccCCeEEEec-CCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCC
Confidence 5433 23321100 00001 11111111 59999999999999999999999998888654221333
Q ss_pred CCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHH
Q psy14500 569 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSI 632 (938)
Q Consensus 569 ~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i 632 (938)
...++|+|+|.+...- .+.+++++++||...+.+..+..++-..+
T Consensus 153 ~~f~viaT~Np~e~~g-------------------~~~l~eA~ldRf~~~~~v~yp~~~~e~~~ 197 (329)
T COG0714 153 PPFIVIATQNPGEYEG-------------------TYPLPEALLDRFLLRIYVDYPDSEEEERI 197 (329)
T ss_pred CCCEEEEccCccccCC-------------------CcCCCHHHHhhEEEEEecCCCCchHHHHH
Confidence 4456666768432211 22367899999976777777744443333
No 287
>PRK06620 hypothetical protein; Validated
Probab=99.39 E-value=4e-12 Score=130.51 Aligned_cols=171 Identities=12% Similarity=0.076 Sum_probs=118.3
Q ss_pred CCCCccccH---HHHHHHHHHHhcCC--C--CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14500 29 KLDPVIGRD---DEIRRAIQVLQRRS--K--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 101 (938)
Q Consensus 29 ~~~~lvG~~---~~~~~l~~~l~~~~--~--~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~ 101 (938)
+|+++|-.+ .++..+..+...+. + ++++|+||||||||+|++++++.. +..+ +.....
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~----------~~~~--~~~~~~--- 78 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS----------NAYI--IKDIFF--- 78 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc----------CCEE--cchhhh---
Confidence 677765433 24444554443222 2 558999999999999999988765 2211 111000
Q ss_pred ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHH
Q psy14500 102 TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAA 181 (938)
Q Consensus 102 ~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~a 181 (938)
.... ... ..+|+|||+|.+. ...+...+....+.|..++|++++++. .+.+ ++
T Consensus 79 ----------~~~~---~~~---~d~lliDdi~~~~-------~~~lf~l~N~~~e~g~~ilits~~~p~---~l~l-~~ 131 (214)
T PRK06620 79 ----------NEEI---LEK---YNAFIIEDIENWQ-------EPALLHIFNIINEKQKYLLLTSSDKSR---NFTL-PD 131 (214)
T ss_pred ----------chhH---Hhc---CCEEEEeccccch-------HHHHHHHHHHHHhcCCEEEEEcCCCcc---ccch-HH
Confidence 0011 111 2389999999651 123445555566888888888888776 3356 89
Q ss_pred HHcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHH
Q psy14500 182 FERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 251 (938)
Q Consensus 182 l~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 251 (938)
+++||. .+.+.+|+.+++..++++.... .++.++++++++++..+.+.+ +.+...++...
T Consensus 132 L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~----~~l~l~~ev~~~L~~~~~~d~------r~l~~~l~~l~ 194 (214)
T PRK06620 132 LSSRIKSVLSILLNSPDDELIKILIFKHFSI----SSVTISRQIIDFLLVNLPREY------SKIIEILENIN 194 (214)
T ss_pred HHHHHhCCceEeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCCH------HHHHHHHHHHH
Confidence 999998 6999999999999999877664 478999999999999999888 77777777653
No 288
>KOG0652|consensus
Probab=99.39 E-value=2.4e-12 Score=127.51 Aligned_cols=162 Identities=20% Similarity=0.355 Sum_probs=107.9
Q ss_pred ccccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14500 427 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 498 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 498 (938)
++|-|.+..++.+.+++-.. ..|+..| ..+|+|||||||||.+|++.|... +..|..+-...+..
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pP----KGvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPP----KGVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ 243 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCC----CceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchHHHh
Confidence 46778888888888877322 2333333 359999999999999999999776 33444333333322
Q ss_pred hhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCce
Q psy14500 499 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 565 (938)
Q Consensus 499 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 565 (938)
. |+|.... +..+...++..++|+||||+|.+. .++|.++|.+|..- + |.
T Consensus 244 -----M-------fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL---D--GF- 305 (424)
T KOG0652|consen 244 -----M-------FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL---D--GF- 305 (424)
T ss_pred -----h-------hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhh---c--CC-
Confidence 2 3332221 222333456667999999998654 57888888887641 1 11
Q ss_pred eecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 566 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 566 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
.+..++-+|++||.- ..++|.++ +|+|..|.||-++++...+|++..-
T Consensus 306 ss~~~vKviAATNRv------------------------DiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHs 355 (424)
T KOG0652|consen 306 SSDDRVKVIAATNRV------------------------DILDPALLRSGRLDRKIEFPHPNEEARARILQIHS 355 (424)
T ss_pred CCccceEEEeecccc------------------------cccCHHHhhcccccccccCCCCChHHHHHHHHHhh
Confidence 123456789999962 23667776 6999999999999999988865443
No 289
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.39 E-value=7e-12 Score=137.73 Aligned_cols=176 Identities=16% Similarity=0.200 Sum_probs=124.3
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccch
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGE 107 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~ 107 (938)
+|++++|++.+++.+...+..+..+|+ ||+||+|+|||++|+++|+.+.+...... -..++.+... .+.. .
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~--h~D~~~~~~~---~~~~-i-- 73 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE--YVDIIEFKPI---NKKS-I-- 73 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCeEEeccc---cCCC-C--
Confidence 589999999999999999988777776 89999999999999999998865321111 1122222221 1111 1
Q ss_pred HHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--ceEEEEecChhHHHHhhhcCHHH
Q psy14500 108 FEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAF 182 (938)
Q Consensus 108 ~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~i~vI~~tn~~~~~~~~~ld~al 182 (938)
....++.+...+. ..++..|++||++|.|. .+++|.|+..+|+. .+.+|.+|+.++ .+.+++
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------~~a~naLLK~LEepp~~t~~il~~~~~~-----~ll~TI 140 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------EQAQNAFLKTIEEPPKGVFIILLCENLE-----QILDTI 140 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH-----hCcHHH
Confidence 1123556555443 12345699999999993 46788999999863 456666666666 789999
Q ss_pred HcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhc
Q psy14500 183 ERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 233 (938)
Q Consensus 183 ~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 233 (938)
+|||..+.|++|+.++....+..... .++++++..++.++++.
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~g~ 183 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSDGI 183 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcCCC
Confidence 99999999999999988777653221 35677777777776553
No 290
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.39 E-value=4.9e-12 Score=132.49 Aligned_cols=163 Identities=13% Similarity=0.126 Sum_probs=107.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
+++|+||||||||++++++++.+...+..+.++.+...... ...+...+... .+|+|||+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~~~--dlliiDdi 106 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF------------------VPEVLEGMEQL--SLVCIDNI 106 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh------------------hHHHHHHhhhC--CEEEEeCh
Confidence 79999999999999999999988655555556555432210 00112222222 48999999
Q ss_pred cccC--HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCC
Q psy14500 539 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID 616 (938)
Q Consensus 539 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~ 616 (938)
+.+. +..+..|+.+++... ...+..+|+||+.++..+. .+.|++.+|+.
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~---------e~g~~~li~ts~~~p~~l~--------------------~~~~~L~SRl~ 157 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRIL---------ESGRTRLLITGDRPPRQLN--------------------LGLPDLASRLD 157 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHH---------HcCCCeEEEeCCCChHHcC--------------------cccHHHHHHHh
Confidence 9885 444555555554210 1122347788887766542 25689999995
Q ss_pred --eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHH
Q psy14500 617 --DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSIL 685 (938)
Q Consensus 617 --~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~ 685 (938)
.++.+.|++.+++.+++.+.. ..++ +.++++++++|+... -||+......++++
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a-------~~~~--~~l~~~v~~~L~~~~------~~d~r~l~~~l~~l 213 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRA-------RLRG--FELPEDVGRFLLKRL------DREMRTLFMTLDQL 213 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHH-------HHcC--CCCCHHHHHHHHHhh------cCCHHHHHHHHHHH
Confidence 499999999999999965433 2234 789999999999833 34544443335543
No 291
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.39 E-value=1e-11 Score=134.99 Aligned_cols=235 Identities=18% Similarity=0.184 Sum_probs=150.4
Q ss_pred hHHHHHhcC-CCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCC----CCC--------c-
Q psy14500 20 DLTEKARLG-KLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEV----PNS--------L- 85 (938)
Q Consensus 20 ~l~~~~~~~-~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~----p~~--------~- 85 (938)
+|.++.++. .|..+|||++.+..|+..+..+..+++||.||+|||||++|+++++.+..... |.. .
T Consensus 5 ~~~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~ 84 (350)
T CHL00081 5 NLKKKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMS 84 (350)
T ss_pred chhhccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhc
Confidence 455555554 78899999999999999888888899999999999999999999988865321 111 0
Q ss_pred ---C--------------CCeEEEEehhhhhcCccccchHHHHHHHHHHHHH--------hcCCCeEEEEeCccccccCC
Q psy14500 86 ---L--------------SKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS--------NNQKDIIIFIDELHTMIGTG 140 (938)
Q Consensus 86 ---~--------------~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~--------~~~~~~iL~iDEid~l~~~~ 140 (938)
+ ..++..+..+.. .....|.+. +...+.... ......+|||||++.+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lp~~~t--ed~l~G~iD--~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~--- 157 (350)
T CHL00081 85 DEVREAIQNGETIETEKIKIPMVDLPLGAT--EDRVCGTID--IEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD--- 157 (350)
T ss_pred hhhhhhhcccccccceeccccceecCCCCc--hhhccCccc--HHHHhhcCcccccCCeeeecCCCEEEecChHhCC---
Confidence 0 001111111000 001112110 111111110 01113499999999994
Q ss_pred CCCCccchhhhhhhhccCC---------------ceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCC-HHHHHHHH
Q psy14500 141 KVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPD-IEETISIL 203 (938)
Q Consensus 141 ~~~~~~~~~~~L~~~l~~~---------------~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~-~~e~~~il 203 (938)
...++.|+..|+.+ .+++|+++|+.+ ..+.+++.+||.. +.+..|+ .+++.+|+
T Consensus 158 -----~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e----g~l~~~LldRf~l~i~l~~~~~~~~e~~il 228 (350)
T CHL00081 158 -----DHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGMHAEIRTVKDPELRVKIV 228 (350)
T ss_pred -----HHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc----CCCCHHHHHHhCceeecCCCCChHHHHHHH
Confidence 35666777776542 356777777654 2589999999996 8999997 58888888
Q ss_pred Hhhhhh-------------------------hhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHHHhh
Q psy14500 204 RGLQKK-------------------------YEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEI 258 (938)
Q Consensus 204 ~~~~~~-------------------------~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~ 258 (938)
+..... ...-..+.+++..+.+++.++... ....|+..+.++..|.+.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~--~~~s~Ra~i~l~raArA~Aal~G 306 (350)
T CHL00081 229 EQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSEL--DVDGLRGDIVTNRAAKALAAFEG 306 (350)
T ss_pred HhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHH--CCCCChHHHHHHHHHHHHHHHcC
Confidence 653210 011234778999999998887663 23468888888888877766654
Q ss_pred --cCchhHHHHHHHHH
Q psy14500 259 --DSKPEIMDKLERRL 272 (938)
Q Consensus 259 --~~~p~~l~~~~~~~ 272 (938)
.-.|+++...-...
T Consensus 307 R~~V~pdDv~~~a~~v 322 (350)
T CHL00081 307 RTEVTPKDIFKVITLC 322 (350)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 34677776655444
No 292
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.38 E-value=1.6e-12 Score=125.09 Aligned_cols=131 Identities=27% Similarity=0.473 Sum_probs=85.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
+++|+||||||||++|+.+|+.+ +.++..+.++..++...+...+-...+...... +.+...++ .++|++|||+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~-~~l~~a~~--~~~il~lDEi 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKD-GPLVRAMR--KGGILVLDEI 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE--CCCTTHH--EEEEEEESSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEeccccccccceeeeeeccccccccc-cccccccc--ceeEEEECCc
Confidence 58999999999999999999999 789999999887665433221111111111111 12222222 4589999999
Q ss_pred cccCHHHHHHHHHhhcCCceecCC-CceeecC-------CeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChH
Q psy14500 539 EKANSDVFNILLQILDDGRLTDNR-GRTINFR-------NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPE 610 (938)
Q Consensus 539 d~~~~~~~~~Ll~~le~g~~~~~~-g~~~~~~-------~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 610 (938)
+++++.+++.|+++++++.+.... +...... +..+|+|+|..... ...++++
T Consensus 75 n~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~--------------------~~~l~~a 134 (139)
T PF07728_consen 75 NRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKG--------------------RKELSPA 134 (139)
T ss_dssp GG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST----------------------TTTTCHH
T ss_pred ccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCC--------------------cCcCCHH
Confidence 999999999999999998877433 3333332 38999999975511 2358889
Q ss_pred HhhcC
Q psy14500 611 FINRI 615 (938)
Q Consensus 611 l~~R~ 615 (938)
|.+||
T Consensus 135 l~~Rf 139 (139)
T PF07728_consen 135 LLDRF 139 (139)
T ss_dssp HHTT-
T ss_pred HHhhC
Confidence 99886
No 293
>KOG0729|consensus
Probab=99.38 E-value=1.2e-12 Score=130.08 Aligned_cols=158 Identities=24% Similarity=0.391 Sum_probs=115.6
Q ss_pred ccccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14500 427 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 498 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 498 (938)
.++-|..+.++.+.+.+... ..|+..|+ .+|++||||||||.+|+++|+.. +..|+++-.+++..
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppk----gvllygppgtgktl~aravanrt---dacfirvigselvq 249 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPK----GVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSELVQ 249 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCC----ceEEeCCCCCchhHHHHHHhccc---CceEEeehhHHHHH
Confidence 45667777777777776432 23443333 59999999999999999999654 88999999988876
Q ss_pred hhhhhhhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCce
Q psy14500 499 KHSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 565 (938)
Q Consensus 499 ~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 565 (938)
+ |+|+.. .+.++...+...-||+||||||.+. .++|.++|.++..-.-.+.
T Consensus 250 k------------yvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdp---- 313 (435)
T KOG0729|consen 250 K------------YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDP---- 313 (435)
T ss_pred H------------HhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCC----
Confidence 4 666543 3677788888888999999998754 5789999888864111122
Q ss_pred eecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHH
Q psy14500 566 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIA 633 (938)
Q Consensus 566 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~ 633 (938)
-.+.-++++||.+.. ++|.|+ +|+|..|.|.-++-+-...|+
T Consensus 314 --rgnikvlmatnrpdt------------------------ldpallrpgrldrkvef~lpdlegrt~i~ 357 (435)
T KOG0729|consen 314 --RGNIKVLMATNRPDT------------------------LDPALLRPGRLDRKVEFGLPDLEGRTHIF 357 (435)
T ss_pred --CCCeEEEeecCCCCC------------------------cCHhhcCCcccccceeccCCcccccceeE
Confidence 245668899997543 566666 699999999988877666663
No 294
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.38 E-value=7e-12 Score=127.17 Aligned_cols=162 Identities=18% Similarity=0.158 Sum_probs=111.4
Q ss_pred HHHHHHhcCCCC-CcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCC---------------eEEEEehhhhhcCcccc
Q psy14500 42 RAIQVLQRRSKN-NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK---------------KILLLDIALLLAGTKYR 105 (938)
Q Consensus 42 ~l~~~l~~~~~~-~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~---------------~~~~~~~~~l~~~~~~~ 105 (938)
.+.+.+..+..+ .+||+||+|+|||++|+.+++.+.+.. +.....+ .+..+..... . .
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~-~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~----~-~ 76 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQ-PGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQ----S-I 76 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCcEEEeccccC----c-C
Confidence 455555565554 489999999999999999999985431 0000000 1222221110 0 1
Q ss_pred chHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--ceEEEEecChhHHHHhhhcCH
Q psy14500 106 GEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDA 180 (938)
Q Consensus 106 g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~i~vI~~tn~~~~~~~~~ld~ 180 (938)
....++.++..+.. .+...|+||||+|.|.. +.++.|+..++.. ...+|++|+... .+.+
T Consensus 77 --~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~--------~~~~~Ll~~le~~~~~~~~il~~~~~~-----~l~~ 141 (188)
T TIGR00678 77 --KVDQVRELVEFLSRTPQESGRRVVIIEDAERMNE--------AAANALLKTLEEPPPNTLFILITPSPE-----KLLP 141 (188)
T ss_pred --CHHHHHHHHHHHccCcccCCeEEEEEechhhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChH-----hChH
Confidence 11245566666543 24467999999999943 4667788888753 467777777664 7899
Q ss_pred HHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 181 AFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 181 al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
++++|+..+.|++|+.++...+++.. + ++++++..++..+++..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGGSP 185 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCCCc
Confidence 99999999999999999998888753 3 67899999999888755
No 295
>KOG0743|consensus
Probab=99.38 E-value=3e-12 Score=138.41 Aligned_cols=157 Identities=18% Similarity=0.214 Sum_probs=114.6
Q ss_pred hcCCCCCccccHHHHHHHHHHH----h---------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVL----Q---------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l----~---------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
.|.+|+-++-..+..+++..=| . ++-+++-|||||||||||+++.|+|+.+ +..+|-
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIyd 265 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYD 265 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc----------CCceEE
Confidence 5678888877776666665533 2 3455788999999999999999999999 889998
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc-----c-----chhhhhhhhcc-----
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS-----I-----DAGNMLKPELS----- 157 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~-----~-----~~~~~L~~~l~----- 157 (938)
++++.... +. .++.++... .+++||+|++||.-+..+..... + =...-|+..+.
T Consensus 266 LeLt~v~~------n~--dLr~LL~~t---~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs 334 (457)
T KOG0743|consen 266 LELTEVKL------DS--DLRHLLLAT---PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS 334 (457)
T ss_pred eeeccccC------cH--HHHHHHHhC---CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccccc
Confidence 88765442 22 277777665 44679999999987653321111 1 01122344442
Q ss_pred -CCceEEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhh
Q psy14500 158 -RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQK 208 (938)
Q Consensus 158 -~~~i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~ 208 (938)
.+.-++|+|||..+ .+||||+| |++. |++..-+.++-..++..++.
T Consensus 335 cg~ERIivFTTNh~E-----kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 335 CGDERIIVFTTNHKE-----KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred CCCceEEEEecCChh-----hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 23678999999999 99999999 9996 99999999988888877664
No 296
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.38 E-value=2.4e-12 Score=159.12 Aligned_cols=146 Identities=17% Similarity=0.253 Sum_probs=101.5
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhh-------h----h------------------hhc
Q psy14500 456 PYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS-------I----S------------------RLI 506 (938)
Q Consensus 456 ~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~-------~----~------------------~l~ 506 (938)
|...+||+||||||||.+|+++|..+ +.||+.+.++++..... . + .++
T Consensus 1629 pPKGILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1629 PSRGILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 33479999999999999999999998 89999999998875310 0 0 000
Q ss_pred CCCCCCccccc----cchhHHHHHhCCCEEEEEccccccCHH-----HHHHHHHhhcCCceecCCCceeecCCeEEEEec
Q psy14500 507 GAPPGYIGYEE----GGYLTEIVRRKPYSLILLDEIEKANSD-----VFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 577 (938)
Q Consensus 507 g~~~~~~g~~~----~~~l~~~~~~~~~~vl~lDEid~~~~~-----~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 577 (938)
....++.+..+ .+.+++.++...+|||+|||||.+... ..+.|+..|+.... .....++++|+||
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~------~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE------RCSTRNILVIAST 1779 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccc------cCCCCCEEEEEeC
Confidence 00011122222 234566677788899999999988753 36788888874110 0123568899999
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHH
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIAN 634 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~ 634 (938)
|.+. .++|+|+. |+|..|.++.++..+..+++.
T Consensus 1780 NRPD------------------------~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206 1780 HIPQ------------------------KVDPALIAPNKLNTCIKIRRLLIPQQRKHFF 1814 (2281)
T ss_pred CCcc------------------------cCCHhHcCCCCCCeEEEeCCCCchhHHHHHH
Confidence 9754 37888885 999999999887766666543
No 297
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.38 E-value=2.3e-12 Score=122.68 Aligned_cols=116 Identities=29% Similarity=0.462 Sum_probs=85.4
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccc--cchhHHHHHhCC-CEEEEEc
Q psy14500 460 FMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEE--GGYLTEIVRRKP-YSLILLD 536 (938)
Q Consensus 460 iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~-~~vl~lD 536 (938)
+||+||||||||++|+.+|+.+ +.+++.+++.++.+. +.+... ...+........ ++|||||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS------------YAGDSEQKIRDFFKKAKKSAKPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS------------STTHHHHHHHHHHHHHHHTSTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc------------cccccccccccccccccccccceeeeec
Confidence 6899999999999999999998 789999999887632 111111 122333334444 7999999
Q ss_pred cccccCHHH-----------HHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhh
Q psy14500 537 EIEKANSDV-----------FNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI 605 (938)
Q Consensus 537 Eid~~~~~~-----------~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 605 (938)
|+|.+.+.. ++.|+..+++.. ....++++|+|||. ..
T Consensus 66 e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~--------~~~~~~~vI~ttn~------------------------~~ 113 (132)
T PF00004_consen 66 EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPS--------SKNSRVIVIATTNS------------------------PD 113 (132)
T ss_dssp TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTT--------TTSSSEEEEEEESS------------------------GG
T ss_pred cchhcccccccccccccccccceeeecccccc--------cccccceeEEeeCC------------------------hh
Confidence 999988765 889999998621 01245889999997 23
Q ss_pred ccChHHh-hcCCeEEEcc
Q psy14500 606 YFRPEFI-NRIDDIIVFR 622 (938)
Q Consensus 606 ~~~~~l~-~R~~~~i~f~ 622 (938)
.+.+.++ +||+..+.++
T Consensus 114 ~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 114 KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GSCHHHHSTTSEEEEEE-
T ss_pred hCCHhHHhCCCcEEEEcC
Confidence 4788999 9999888775
No 298
>PRK09087 hypothetical protein; Validated
Probab=99.37 E-value=1.4e-11 Score=127.67 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=119.1
Q ss_pred CCCCccc-c-HHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccc
Q psy14500 29 KLDPVIG-R-DDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRG 106 (938)
Q Consensus 29 ~~~~lvG-~-~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g 106 (938)
+|+++|. . +...-..+..+.....+.++|+||+|+|||+|++++++.. +..+ ++...+.
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~~~~~~~l~l~G~~GsGKThLl~~~~~~~----------~~~~--i~~~~~~------- 79 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWPNWPSPVVVLAGPVGSGKTHLASIWREKS----------DALL--IHPNEIG------- 79 (226)
T ss_pred ChhceeecCchHHHHHHHHhcccCCCCeEEEECCCCCCHHHHHHHHHHhc----------CCEE--ecHHHcc-------
Confidence 7888874 2 3322223332223333458999999999999999999764 3332 3332111
Q ss_pred hHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhh-cCHHHHcc
Q psy14500 107 EFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIE-KDAAFERR 185 (938)
Q Consensus 107 ~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~-ld~al~~R 185 (938)
...+..+. . .+|+|||++.+... ...+...+....+.+..++|++++.+. .+. ..+.+++|
T Consensus 80 ------~~~~~~~~-~---~~l~iDDi~~~~~~-----~~~lf~l~n~~~~~g~~ilits~~~p~---~~~~~~~dL~SR 141 (226)
T PRK09087 80 ------SDAANAAA-E---GPVLIEDIDAGGFD-----ETGLFHLINSVRQAGTSLLMTSRLWPS---SWNVKLPDLKSR 141 (226)
T ss_pred ------hHHHHhhh-c---CeEEEECCCCCCCC-----HHHHHHHHHHHHhCCCeEEEECCCChH---HhccccccHHHH
Confidence 12222222 1 27999999976221 234555666666778777777777665 223 37899999
Q ss_pred c---ceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHH
Q psy14500 186 F---QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 251 (938)
Q Consensus 186 f---~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 251 (938)
| ..+++.+|+.+++..++++.++. .++.++++++.+++..+.+.+ +.+..+++...
T Consensus 142 l~~gl~~~l~~pd~e~~~~iL~~~~~~----~~~~l~~ev~~~La~~~~r~~------~~l~~~l~~L~ 200 (226)
T PRK09087 142 LKAATVVEIGEPDDALLSQVIFKLFAD----RQLYVDPHVVYYLVSRMERSL------FAAQTIVDRLD 200 (226)
T ss_pred HhCCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhhhhH------HHHHHHHHHHH
Confidence 9 46999999999999999988875 478999999999999998877 66666655543
No 299
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.37 E-value=3.1e-12 Score=125.60 Aligned_cols=151 Identities=24% Similarity=0.355 Sum_probs=94.4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc-eEEeccccccc----hhhhhhh
Q psy14500 431 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES-IIRIDMSEFIE----KHSISRL 505 (938)
Q Consensus 431 Gq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~-~~~~~~~~~~~----~~~~~~l 505 (938)
||+.+++.+...+...+.. +.+||+||+|+||+++|+++|+.++..... ..+..|..... .+.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~--------ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~ 72 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLP--------HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFII 72 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEE
T ss_pred CcHHHHHHHHHHHHcCCcc--------eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEE
Confidence 8999999999999865532 368999999999999999999999654322 11111111110 0000011
Q ss_pred cCCCCC--CccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCC
Q psy14500 506 IGAPPG--YIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 579 (938)
Q Consensus 506 ~g~~~~--~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 579 (938)
+..... .++.+..+.+...+. .+++.|++|||+|+|+.+++|+||+.||+ +..+++||++|+.
T Consensus 73 ~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe-----------pp~~~~fiL~t~~ 141 (162)
T PF13177_consen 73 IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE-----------PPENTYFILITNN 141 (162)
T ss_dssp EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS-----------TTTTEEEEEEES-
T ss_pred EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC-----------CCCCEEEEEEECC
Confidence 111111 122222333333332 24578999999999999999999999998 6788999999886
Q ss_pred CchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCC
Q psy14500 580 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN 625 (938)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~ 625 (938)
. ..+.|.+.+|| ..+.|+|++
T Consensus 142 ~------------------------~~il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 P------------------------SKILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp G------------------------GGS-HHHHTTS-EEEEE----
T ss_pred h------------------------HHChHHHHhhc-eEEecCCCC
Confidence 3 34779999999 699999875
No 300
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=4.7e-12 Score=147.79 Aligned_cols=184 Identities=22% Similarity=0.281 Sum_probs=134.5
Q ss_pred CCccccHHHHHHHHHHHhc---------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh--
Q psy14500 31 DPVIGRDDEIRRAIQVLQR---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-- 99 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~~---------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~-- 99 (938)
+.+|||++++..+...+.+ .+.+++||.||+|||||.||++||..+..+ ...++.+|+|...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-------e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD-------EQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-------CccceeechHHHHHH
Confidence 4789999999999987762 333468999999999999999999999543 3577888887553
Q ss_pred --------cCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC------------
Q psy14500 100 --------AGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 159 (938)
Q Consensus 100 --------~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------ 159 (938)
+...|+|--+ ...+.++.+.++.+|+++|||++-.+ ++.+.|+++++.|
T Consensus 564 HsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKAHp--------dV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKAHP--------DVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhcCH--------HHHHHHHHHhcCCeeecCCCCEEec
Confidence 1223454332 34555666667678999999999844 8999999999765
Q ss_pred -ceEEEEecChhHHH-----------------H------hhhcCHHHHcccc-eEEeeCCCHHHHHHHHHhhhhhhhc--
Q psy14500 160 -ELHCIGATTLNEYR-----------------Q------YIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEV-- 212 (938)
Q Consensus 160 -~i~vI~~tn~~~~~-----------------~------~~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~-- 212 (938)
+.++|+|+|--... . .-...|.|+.|++ +|.|.+++.++..+|+...+.++..
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L 712 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRL 712 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 45788888832100 0 0124688999998 6999999999999998766554322
Q ss_pred ---ccCCCCCHHHHHHHHHhhhh
Q psy14500 213 ---HHGVEITDPAIVAASELSYR 232 (938)
Q Consensus 213 ---~~~~~i~~~~l~~~~~~s~~ 232 (938)
...+.+++++.++++.....
T Consensus 713 ~~~~i~l~~s~~a~~~l~~~gyd 735 (786)
T COG0542 713 AERGITLELSDEAKDFLAEKGYD 735 (786)
T ss_pred HhCCceEEECHHHHHHHHHhccC
Confidence 33467899999998887543
No 301
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=1e-11 Score=134.81 Aligned_cols=195 Identities=16% Similarity=0.154 Sum_probs=130.3
Q ss_pred CCCCccccHHHHHHHHHHHhcCCC-CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCC--------cCCCeEEEEehhhhh
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQRRSK-NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------LLSKKILLLDIALLL 99 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~~~~~-~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~--------~~~~~~~~~~~~~l~ 99 (938)
.|++++||+.+++.+...+..++. +..||+||+|+||+++|.++|+.+.+...... ..-..++.+.+....
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 478999999999999999987764 56799999999999999999999866431100 000122222221111
Q ss_pred cCcc-------cc-------ch-HHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC-Cc
Q psy14500 100 AGTK-------YR-------GE-FEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-GE 160 (938)
Q Consensus 100 ~~~~-------~~-------g~-~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-~~ 160 (938)
.+.. .. +. ....++.+...+.. .++..|++||++|.|. ..++|.|+..||. ++
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~--------~~aaNaLLK~LEEPp~ 153 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN--------EAAANALLKTLEEPGN 153 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC--------HHHHHHHHHHHhCCCC
Confidence 1100 00 01 01235555555442 2446799999999993 4678889999974 35
Q ss_pred eEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCc
Q psy14500 161 LHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 240 (938)
Q Consensus 161 i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 240 (938)
.++|.+|+.++ .+-|+++|||..+.|++++.++...+|...... .+. +.....++.++.|..
T Consensus 154 ~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~----~~~---~~~~~~l~~~a~Gs~------ 215 (314)
T PRK07399 154 GTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE----EIL---NINFPELLALAQGSP------ 215 (314)
T ss_pred CeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc----ccc---hhHHHHHHHHcCCCH------
Confidence 56778888777 899999999999999999999999998764321 111 122456667766654
Q ss_pred hhhhhHHHH
Q psy14500 241 DKAIDLIDE 249 (938)
Q Consensus 241 ~~a~~ll~~ 249 (938)
+++..+++.
T Consensus 216 ~~al~~l~~ 224 (314)
T PRK07399 216 GAAIANIEQ 224 (314)
T ss_pred HHHHHHHHH
Confidence 777776654
No 302
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.37 E-value=9.7e-12 Score=138.15 Aligned_cols=188 Identities=24% Similarity=0.335 Sum_probs=125.7
Q ss_pred CccccHHHHHHHHHHHh----c-------C-------CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 32 PVIGRDDEIRRAIQVLQ----R-------R-------SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~----~-------~-------~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
.+|||+++++.+...+. + . ...++||+||||||||++|+++|+.+ +.++..+
T Consensus 78 ~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~pf~~~ 147 (413)
T TIGR00382 78 YVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVPFAIA 147 (413)
T ss_pred eecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCCeEEe
Confidence 56999999998877662 1 1 13689999999999999999999887 5667777
Q ss_pred ehhhhhcCccccch-HHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCC------CccchhhhhhhhccC-----
Q psy14500 94 DIALLLAGTKYRGE-FEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVE------GSIDAGNMLKPELSR----- 158 (938)
Q Consensus 94 ~~~~l~~~~~~~g~-~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~------~~~~~~~~L~~~l~~----- 158 (938)
++..+.. ..|.|. .+..+..++..+. ....+.||||||+|.+.+..... ....+++.|+++|+.
T Consensus 148 da~~L~~-~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v 226 (413)
T TIGR00382 148 DATTLTE-AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANV 226 (413)
T ss_pred chhhccc-cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceec
Confidence 7766532 346665 3444555444321 12335699999999998743211 112577888888841
Q ss_pred ----------CceEEEEecChh-------------------------------------HHH------H--hhhcCHHHH
Q psy14500 159 ----------GELHCIGATTLN-------------------------------------EYR------Q--YIEKDAAFE 183 (938)
Q Consensus 159 ----------~~i~vI~~tn~~-------------------------------------~~~------~--~~~ld~al~ 183 (938)
.+.++|.|+|-. +.. . .+.+.|.|.
T Consensus 227 ~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEfl 306 (413)
T TIGR00382 227 PPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFI 306 (413)
T ss_pred ccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHh
Confidence 123456665540 000 0 112568999
Q ss_pred cccce-EEeeCCCHHHHHHHHHh----hhhhhhc-----ccCCCCCHHHHHHHHHhh
Q psy14500 184 RRFQK-ILVEEPDIEETISILRG----LQKKYEV-----HHGVEITDPAIVAASELS 230 (938)
Q Consensus 184 ~Rf~~-i~~~~p~~~e~~~il~~----~~~~~~~-----~~~~~i~~~~l~~~~~~s 230 (938)
.|++. +.|.+++.+++..|+.. +.+++.. .-.+.++++++++++..+
T Consensus 307 gRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 307 GRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred CCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 99986 78999999999999864 4444432 233678999999999875
No 303
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.37 E-value=6.6e-12 Score=152.77 Aligned_cols=178 Identities=19% Similarity=0.256 Sum_probs=125.9
Q ss_pred CccccHHHHHHHHHHHhcC---------CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc--
Q psy14500 32 PVIGRDDEIRRAIQVLQRR---------SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-- 100 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~~---------~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~-- 100 (938)
.++||+.+++.+...+... +..++||+||||||||++|+++|+.+ ++.++.++++....
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----------~~~~~~~d~se~~~~~ 524 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----------GVHLERFDMSEYMEKH 524 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----------cCCeEEEeCchhhhcc
Confidence 6899999999998877631 22357999999999999999999988 56777777765432
Q ss_pred --------CccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------
Q psy14500 101 --------GTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------- 159 (938)
Q Consensus 101 --------~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 159 (938)
...|.|.-+ ...+.++.+..+.+||+|||+|.+. .++++.|+++++.+
T Consensus 525 ~~~~lig~~~gyvg~~~---~~~l~~~~~~~p~~VvllDEieka~--------~~~~~~Ll~~ld~g~~~d~~g~~vd~~ 593 (731)
T TIGR02639 525 TVSRLIGAPPGYVGFEQ---GGLLTEAVRKHPHCVLLLDEIEKAH--------PDIYNILLQVMDYATLTDNNGRKADFR 593 (731)
T ss_pred cHHHHhcCCCCCcccch---hhHHHHHHHhCCCeEEEEechhhcC--------HHHHHHHHHhhccCeeecCCCcccCCC
Confidence 112333211 1222233233456899999999984 36888999998765
Q ss_pred ceEEEEecChhH--HHH------------------hhhcCHHHHcccc-eEEeeCCCHHHHHHHHHhhhhhhhc---c--
Q psy14500 160 ELHCIGATTLNE--YRQ------------------YIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEV---H-- 213 (938)
Q Consensus 160 ~i~vI~~tn~~~--~~~------------------~~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~---~-- 213 (938)
+.++|+|||... ... ...+.|.|+.||+ +|.|.+++.++...|++..+.++.. .
T Consensus 594 ~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~ 673 (731)
T TIGR02639 594 NVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKN 673 (731)
T ss_pred CCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Confidence 355888887531 000 0125789999998 4999999999999999877764322 2
Q ss_pred cCCCCCHHHHHHHHHhh
Q psy14500 214 HGVEITDPAIVAASELS 230 (938)
Q Consensus 214 ~~~~i~~~~l~~~~~~s 230 (938)
..+.+++++++.++..+
T Consensus 674 ~~l~i~~~a~~~La~~~ 690 (731)
T TIGR02639 674 IKLELTDDAKKYLAEKG 690 (731)
T ss_pred CeEEeCHHHHHHHHHhC
Confidence 23778999999998863
No 304
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.36 E-value=7e-11 Score=131.73 Aligned_cols=217 Identities=13% Similarity=0.108 Sum_probs=125.6
Q ss_pred CccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHH
Q psy14500 32 PVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR 111 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 111 (938)
.++|++++++.++..+.. ..||||.||||||||++|++++..+.... |.....+.+. ..+++.+...... . .
T Consensus 21 ~i~gre~vI~lll~aala--g~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ft--tp~DLfG~l~i~~-~--~ 92 (498)
T PRK13531 21 GLYERSHAIRLCLLAALS--GESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFS--TPEEVFGPLSIQA-L--K 92 (498)
T ss_pred hccCcHHHHHHHHHHHcc--CCCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeec--CcHHhcCcHHHhh-h--h
Confidence 679999999999988754 48999999999999999999999773321 2111111111 1222221100000 0 0
Q ss_pred HHHHHHHHHhc--CCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCc------------eEEEEecChhHHHHhhh
Q psy14500 112 LKKILKEISNN--QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE------------LHCIGATTLNEYRQYIE 177 (938)
Q Consensus 112 l~~~~~~a~~~--~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~------------i~vI~~tn~~~~~~~~~ 177 (938)
-...|...... ....+||+|||+.+. ...++.|+..|+.+. ..+++|||+.+ ..-.
T Consensus 93 ~~g~f~r~~~G~L~~A~lLfLDEI~ras--------p~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LP--E~g~ 162 (498)
T PRK13531 93 DEGRYQRLTSGYLPEAEIVFLDEIWKAG--------PAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELP--EADS 162 (498)
T ss_pred hcCchhhhcCCccccccEEeecccccCC--------HHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCc--ccCC
Confidence 00111111100 011289999999773 467788888885432 23455566433 0112
Q ss_pred cCHHHHcccce-EEeeCCC-HHHHHHHHHhhhhh--h-----------------hcccCCCCCHHHHHHHHHhhhhc--c
Q psy14500 178 KDAAFERRFQK-ILVEEPD-IEETISILRGLQKK--Y-----------------EVHHGVEITDPAIVAASELSYRY--I 234 (938)
Q Consensus 178 ld~al~~Rf~~-i~~~~p~-~~e~~~il~~~~~~--~-----------------~~~~~~~i~~~~l~~~~~~s~~~--~ 234 (938)
..+++.+||.. +.+++|+ .++-.+|+...... . ..-..+.+++.+.+++..+...- .
T Consensus 163 ~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~lr~~ 242 (498)
T PRK13531 163 SLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQLDAL 242 (498)
T ss_pred chHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHHhcC
Confidence 34699999974 8899997 45557777542110 0 01134667888888887775421 1
Q ss_pred c--cCCCchhhhhHHHHHHHHHHHhh--cCchhHHH
Q psy14500 235 S--DRFMPDKAIDLIDEAAAKIKIEI--DSKPEIMD 266 (938)
Q Consensus 235 ~--~~~~p~~a~~ll~~a~~~~~~~~--~~~p~~l~ 266 (938)
. ....||..+.++..+-+.+.... ...|+++.
T Consensus 243 r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 243 PNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred CCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 1 12577888887777766655543 44677665
No 305
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.36 E-value=9.1e-12 Score=148.52 Aligned_cols=202 Identities=16% Similarity=0.239 Sum_probs=128.1
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhc-----------------------
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIF----------------------- 482 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~----------------------- 482 (938)
+..|+||+.++..+..++..... +++||.||+|||||++|++|+..+-
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~---------g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~ 73 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRI---------GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEE 73 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCC---------CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChh
Confidence 35689999999888766653322 3699999999999999999999872
Q ss_pred ---------cCCCceEEeccccccchhhhhhhcCCCCC----CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHH
Q psy14500 483 ---------NNEESIIRIDMSEFIEKHSISRLIGAPPG----YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNIL 549 (938)
Q Consensus 483 ---------~~~~~~~~~~~~~~~~~~~~~~l~g~~~~----~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~L 549 (938)
....+|+.+.++. +...++|...- ..|.. ..-.+.+..+.++|||||||+++++.+|+.|
T Consensus 74 ~~~~~~~~~~~~~pfv~~p~~~-----t~~~l~G~~d~~~~l~~g~~--~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~L 146 (633)
T TIGR02442 74 CRRKYRPSEQRPVPFVNLPLGA-----TEDRVVGSLDIERALREGEK--AFQPGLLAEAHRGILYIDEVNLLDDHLVDVL 146 (633)
T ss_pred hhhcccccccCCCCeeeCCCCC-----cHHHcCCcccHHHHhhcCCe--eecCcceeecCCCeEEeChhhhCCHHHHHHH
Confidence 0012333333221 12234443100 00100 0112344566789999999999999999999
Q ss_pred HHhhcCCcee--cCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCC-H
Q psy14500 550 LQILDDGRLT--DNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN-R 626 (938)
Q Consensus 550 l~~le~g~~~--~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~-~ 626 (938)
++.|++|.+. ..+.......++++|+|+|... ..|+++|++||+..|.+.++. .
T Consensus 147 l~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e-----------------------g~l~~~L~dR~~l~i~v~~~~~~ 203 (633)
T TIGR02442 147 LDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE-----------------------GDLRPQLLDRFGLCVDVAAPRDP 203 (633)
T ss_pred HHHHhcCCEEEEECCceeeecCCeEEEEecCCCC-----------------------CCCCHHHHhhcceEEEccCCCch
Confidence 9999999644 2322233346788888888521 247889999999878777765 3
Q ss_pred HHHHHHHHHHHH-----------------HHHHH---HHccCCeEEEcHHHHHHHHhhcc
Q psy14500 627 KNILSIANIQLN-----------------ILKNK---LLKMNMDLKISKAALKKISNIGF 666 (938)
Q Consensus 627 e~~~~i~~~~l~-----------------~~~~~---~~~~~~~l~~~~~~~~~L~~~~~ 666 (938)
++..+++...+. .+... .+..--.+.++++++++|++...
T Consensus 204 ~~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~ 263 (633)
T TIGR02442 204 EERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCI 263 (633)
T ss_pred HHHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHH
Confidence 555566554322 00011 01111236789999999988543
No 306
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.36 E-value=4.4e-12 Score=142.33 Aligned_cols=167 Identities=25% Similarity=0.353 Sum_probs=110.3
Q ss_pred hccccChHHHHHHHHHHHHhhhcCC----CCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGL----SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS 501 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~----~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~ 501 (938)
.+++.|.+..++.+...+....... ...-.+...+||+||||||||++|+++|+.+ +.+++.+.++++...
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~l~~~-- 195 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVRK-- 195 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHHHHHH--
Confidence 4578899999999988875432110 0011222369999999999999999999988 567777765554321
Q ss_pred hhhhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceeec
Q psy14500 502 ISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINF 568 (938)
Q Consensus 502 ~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~ 568 (938)
|.|... .+.++...+...++||||||+|.+. +.++..|.+++..-.-. ...
T Consensus 196 ----------~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~------~~~ 259 (364)
T TIGR01242 196 ----------YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF------DPR 259 (364)
T ss_pred ----------hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC------CCC
Confidence 222211 1233344455567899999999873 45566666665431000 023
Q ss_pred CCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 569 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 569 ~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
.++.+|+|||... .+++.++ +|||.++.|++++.++..+|+...+
T Consensus 260 ~~v~vI~ttn~~~------------------------~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~ 306 (364)
T TIGR01242 260 GNVKVIAATNRPD------------------------ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHT 306 (364)
T ss_pred CCEEEEEecCChh------------------------hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHH
Confidence 4678999999642 2556666 4999999999999999999976543
No 307
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.36 E-value=1.9e-11 Score=139.39 Aligned_cols=205 Identities=16% Similarity=0.242 Sum_probs=129.7
Q ss_pred CCCCCcc-ccHH--HHHHHHHHHhcCC-CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14500 28 GKLDPVI-GRDD--EIRRAIQVLQRRS-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 103 (938)
Q Consensus 28 ~~~~~lv-G~~~--~~~~l~~~l~~~~-~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~ 103 (938)
-+|+.+| |... +...+..+...+. .++++||||||+|||+|++++++.+.... | +..++.+++..+...
T Consensus 102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~----~~~v~yi~~~~f~~~-- 174 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-P----DLRVMYITSEKFLND-- 174 (440)
T ss_pred CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHH--
Confidence 3788887 5443 3344444443332 35799999999999999999999875421 2 456777777654321
Q ss_pred ccchHH-HHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHHH
Q psy14500 104 YRGEFE-DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAF 182 (938)
Q Consensus 104 ~~g~~~-~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al 182 (938)
+..... ..+..+..... ..+.+|+|||++.+.+... ...+....+....+.+..++|++...+. ....+.+.+
T Consensus 175 ~~~~~~~~~~~~f~~~~~--~~~dvLlIDDi~~l~~~~~--~q~elf~~~n~l~~~~k~iIitsd~~p~--~l~~l~~rL 248 (440)
T PRK14088 175 LVDSMKEGKLNEFREKYR--KKVDVLLIDDVQFLIGKTG--VQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRL 248 (440)
T ss_pred HHHHHhcccHHHHHHHHH--hcCCEEEEechhhhcCcHH--HHHHHHHHHHHHHHcCCeEEEECCCCHH--HHHHHHHHH
Confidence 100000 01122222222 1244999999998854321 0123444444555666655555444443 122467899
Q ss_pred Hcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHH
Q psy14500 183 ERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 183 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 255 (938)
.+||. .+.|.+|+.++|..|++..+.. .++.++++++..++....+.+ +.....+....+...
T Consensus 249 ~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~----~~~~l~~ev~~~Ia~~~~~~~------R~L~g~l~~l~~~~~ 314 (440)
T PRK14088 249 VSRFQMGLVAKLEPPDEETRKKIARKMLEI----EHGELPEEVLNFVAENVDDNL------RRLRGAIIKLLVYKE 314 (440)
T ss_pred hhHHhcCceEeeCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHhccccCH------HHHHHHHHHHHHHHH
Confidence 99997 5899999999999999987764 478899999999999988777 666666666554443
No 308
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.36 E-value=1.6e-12 Score=124.62 Aligned_cols=137 Identities=20% Similarity=0.324 Sum_probs=101.2
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCC
Q psy14500 430 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAP 509 (938)
Q Consensus 430 iGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 509 (938)
+|.+.+++.+...++..... ..+++|+|++||||+++|++|+........+++.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~-------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS-------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS-------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCC-------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------
Confidence 58888899999888876522 23799999999999999999999886666677777776532
Q ss_pred CCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhc
Q psy14500 510 PGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 589 (938)
Q Consensus 510 ~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~ 589 (938)
.+.+..+.+++|||+|+|.++++.|..|+..|+.. ...++.+|++|..+...+.+
T Consensus 62 ------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~----------~~~~~RlI~ss~~~l~~l~~--- 116 (138)
T PF14532_consen 62 ------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQ----------ERSNVRLIASSSQDLEELVE--- 116 (138)
T ss_dssp ------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHC----------TTTTSEEEEEECC-CCCHHH---
T ss_pred ------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhc----------CCCCeEEEEEeCCCHHHHhh---
Confidence 23445567889999999999999999999999852 23566899999987765543
Q ss_pred chHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCC
Q psy14500 590 GDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYL 624 (938)
Q Consensus 590 ~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l 624 (938)
...|.++|+.|++. .|.+|||
T Consensus 117 --------------~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 117 --------------EGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp --------------HSTHHHHHHHHCSTCEEEE---
T ss_pred --------------ccchhHHHHHHhCCCEEeCCCC
Confidence 45688999999975 7777775
No 309
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.36 E-value=7.7e-12 Score=136.24 Aligned_cols=206 Identities=18% Similarity=0.285 Sum_probs=123.5
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-C---CCc---------eEEecc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-N---EES---------IIRIDM 493 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~-~---~~~---------~~~~~~ 493 (938)
..|+||++++..+...+-... .+++++.|+||+|||+++++++..+.. . +.+ +.+.+|
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEV 74 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHH
Confidence 568999999988877665322 237999999999999999999988721 0 001 111111
Q ss_pred ccccc-------------------hhhhhhhcCCCCCCccc-cccc--hhHHHHHhCCCEEEEEccccccCHHHHHHHHH
Q psy14500 494 SEFIE-------------------KHSISRLIGAPPGYIGY-EEGG--YLTEIVRRKPYSLILLDEIEKANSDVFNILLQ 551 (938)
Q Consensus 494 ~~~~~-------------------~~~~~~l~g~~~~~~g~-~~~~--~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~ 551 (938)
..... .....+++|... +... ..+. .-.+.+.++.+++||+||++.+++.+|+.|++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d-~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~ 153 (337)
T TIGR02030 75 RIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLD-IERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLD 153 (337)
T ss_pred hhhhhcccccccccCCCCcCCCCCCCcccceecchh-HhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHH
Confidence 11000 000112222210 0000 0010 01123455667999999999999999999999
Q ss_pred hhcCCceec-CCCceeec-CCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCH-HH
Q psy14500 552 ILDDGRLTD-NRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KN 628 (938)
Q Consensus 552 ~le~g~~~~-~~g~~~~~-~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~-e~ 628 (938)
+|++|.++. ..|..... .++++|+|+|.. ...|++++++||...+.+.++.. ++
T Consensus 154 ~l~~g~~~v~r~G~~~~~~~r~iviat~np~-----------------------eg~l~~~LldRf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 154 VAASGWNVVEREGISIRHPARFVLVGSGNPE-----------------------EGELRPQLLDRFGLHAEIRTVRDVEL 210 (337)
T ss_pred HHHhCCeEEEECCEEEEcCCCEEEEeccccc-----------------------cCCCCHHHHhhcceEEECCCCCCHHH
Confidence 999986332 22333332 456666676642 23489999999998888888876 66
Q ss_pred HHHHHHHHHHH----------H-------HHHH---HccCCeEEEcHHHHHHHHhhc
Q psy14500 629 ILSIANIQLNI----------L-------KNKL---LKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 629 ~~~i~~~~l~~----------~-------~~~~---~~~~~~l~~~~~~~~~L~~~~ 665 (938)
..+|+...... + .+.+ +..--.+.+++++++++++..
T Consensus 211 r~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~ 267 (337)
T TIGR02030 211 RVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELC 267 (337)
T ss_pred HHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 67777653221 1 0010 111123668888888887744
No 310
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=7.8e-12 Score=137.53 Aligned_cols=179 Identities=18% Similarity=0.296 Sum_probs=120.9
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC----ceEEe-ccccccchhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SIIRI-DMSEFIEKHS 501 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~----~~~~~-~~~~~~~~~~ 501 (938)
..++||+++...+..++...+. .+.+||+||+|+|||++|+.+|+.+..... +.... .|.. ..
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl--------~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~----c~ 90 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKL--------HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPA----SP 90 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCC--------CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCC----CH
Confidence 4689999999999999986552 236999999999999999999999865211 11000 1100 00
Q ss_pred hhhhc--CCCCC-----------------CccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCce
Q psy14500 502 ISRLI--GAPPG-----------------YIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRL 558 (938)
Q Consensus 502 ~~~l~--g~~~~-----------------~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~ 558 (938)
..+.+ |..++ .++.+..+.+...+. ...+.|++|||+|.+++..+|.||+.||+
T Consensus 91 ~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE--- 167 (351)
T PRK09112 91 VWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE--- 167 (351)
T ss_pred HHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc---
Confidence 11111 11111 122233334444443 34568999999999999999999999997
Q ss_pred ecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHH
Q psy14500 559 TDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLN 638 (938)
Q Consensus 559 ~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~ 638 (938)
+..+++||+.|+.+. .+.|.+.+|| ..+.|+|++.+++.+++...
T Consensus 168 --------pp~~~~fiLit~~~~------------------------~llptIrSRc-~~i~l~pl~~~~~~~~L~~~-- 212 (351)
T PRK09112 168 --------PPARALFILISHSSG------------------------RLLPTIRSRC-QPISLKPLDDDELKKALSHL-- 212 (351)
T ss_pred --------CCCCceEEEEECChh------------------------hccHHHHhhc-cEEEecCCCHHHHHHHHHHh--
Confidence 456677777776532 2568899999 59999999999999986651
Q ss_pred HHHHHHHccCCeEEEcHHHHHHHHhh
Q psy14500 639 ILKNKLLKMNMDLKISKAALKKISNI 664 (938)
Q Consensus 639 ~~~~~~~~~~~~l~~~~~~~~~L~~~ 664 (938)
+....++++++..++..
T Consensus 213 ---------~~~~~~~~~~~~~i~~~ 229 (351)
T PRK09112 213 ---------GSSQGSDGEITEALLQR 229 (351)
T ss_pred ---------hcccCCCHHHHHHHHHH
Confidence 11112667888777763
No 311
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.36 E-value=1.4e-11 Score=127.36 Aligned_cols=201 Identities=15% Similarity=0.294 Sum_probs=118.1
Q ss_pred CCCCCcc-ccH-H-HHHHHHHHHhcCCC--CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14500 28 GKLDPVI-GRD-D-EIRRAIQVLQRRSK--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 102 (938)
Q Consensus 28 ~~~~~lv-G~~-~-~~~~l~~~l~~~~~--~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~ 102 (938)
-+|+.+| |.. + +...+..+...+.. +.++|+||+|+|||+|.+++++++.... | +..+..++...+...
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-~----~~~v~y~~~~~f~~~- 78 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-P----GKRVVYLSAEEFIRE- 78 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-T----TS-EEEEEHHHHHHH-
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-c----cccceeecHHHHHHH-
Confidence 3888885 642 3 33333333333222 3589999999999999999999875421 1 567777776554311
Q ss_pred cccchHH-HHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHH
Q psy14500 103 KYRGEFE-DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAA 181 (938)
Q Consensus 103 ~~~g~~~-~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~a 181 (938)
+..... ..+..+.......+ +|+||+++.+..... ........+....++++.++|++...+. ....+++.
T Consensus 79 -~~~~~~~~~~~~~~~~~~~~D---lL~iDDi~~l~~~~~--~q~~lf~l~n~~~~~~k~li~ts~~~P~--~l~~~~~~ 150 (219)
T PF00308_consen 79 -FADALRDGEIEEFKDRLRSAD---LLIIDDIQFLAGKQR--TQEELFHLFNRLIESGKQLILTSDRPPS--ELSGLLPD 150 (219)
T ss_dssp -HHHHHHTTSHHHHHHHHCTSS---EEEEETGGGGTTHHH--HHHHHHHHHHHHHHTTSEEEEEESS-TT--TTTTS-HH
T ss_pred -HHHHHHcccchhhhhhhhcCC---EEEEecchhhcCchH--HHHHHHHHHHHHHhhCCeEEEEeCCCCc--cccccChh
Confidence 100000 01223333443333 999999999854210 0112334444555667655555544443 13357899
Q ss_pred HHcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHH
Q psy14500 182 FERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 182 l~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 252 (938)
+.+||. .+.+.+|+.+++..|++..... .++.++++++.+++....+.+ +....+++....
T Consensus 151 L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~----~~~~l~~~v~~~l~~~~~~~~------r~L~~~l~~l~~ 214 (219)
T PF00308_consen 151 LRSRLSWGLVVELQPPDDEDRRRILQKKAKE----RGIELPEEVIEYLARRFRRDV------RELEGALNRLDA 214 (219)
T ss_dssp HHHHHHCSEEEEE----HHHHHHHHHHHHHH----TT--S-HHHHHHHHHHTTSSH------HHHHHHHHHHHH
T ss_pred hhhhHhhcchhhcCCCCHHHHHHHHHHHHHH----hCCCCcHHHHHHHHHhhcCCH------HHHHHHHHHHHH
Confidence 999997 3889999999999999987775 588899999999999887766 555555555443
No 312
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.35 E-value=1.8e-11 Score=133.37 Aligned_cols=225 Identities=17% Similarity=0.179 Sum_probs=141.4
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcC----CCCCC---------cCCCeEE-----
Q psy14500 30 LDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIING----EVPNS---------LLSKKIL----- 91 (938)
Q Consensus 30 ~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~----~~p~~---------~~~~~~~----- 91 (938)
|..+|||++.+..++..+-.+...+++|.|+||+||||++++++..+... ..|.. ..+|+..
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 77899999999998877777778899999999999999999999877321 11111 0000100
Q ss_pred ----------EEehhhhhcCccccchH--HHHH--------HHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhh
Q psy14500 92 ----------LLDIALLLAGTKYRGEF--EDRL--------KKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNM 151 (938)
Q Consensus 92 ----------~~~~~~l~~~~~~~g~~--~~~l--------~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~ 151 (938)
..++-.-.......|.. +..+ ..++.++ .+.+|||||++.|. ...++.
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A----~~GvL~lDEi~~L~--------~~~Q~~ 150 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA----NRGILYIDEVNLLE--------DHLVDV 150 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec----cCCEEEecChHhCC--------HHHHHH
Confidence 00110000000111211 1111 1122212 13489999999983 456777
Q ss_pred hhhhccCC---------------ceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCH-HHHHHHHHhhhhh-----
Q psy14500 152 LKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDI-EETISILRGLQKK----- 209 (938)
Q Consensus 152 L~~~l~~~---------------~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~-~e~~~il~~~~~~----- 209 (938)
|...|+.+ .+++|+++|+.+ ..+.+++.+||.. +.++.|+. +++.+|++.....
T Consensus 151 Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e----g~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~ 226 (337)
T TIGR02030 151 LLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPH 226 (337)
T ss_pred HHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc----CCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCch
Confidence 77777544 356777777654 2589999999996 88888875 8888888652110
Q ss_pred --------------------hhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHHHhh--cCchhHHHH
Q psy14500 210 --------------------YEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEI--DSKPEIMDK 267 (938)
Q Consensus 210 --------------------~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~--~~~p~~l~~ 267 (938)
...-..+.++++++++++.++...- ...|+..+.++..|.+.+.... ...|+++..
T Consensus 227 ~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~--~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~ 304 (337)
T TIGR02030 227 AFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELD--VDGLRGELTLNRAAKALAAFEGRTEVTVDDIRR 304 (337)
T ss_pred hhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 0112457789999999988776532 2357888888888877776654 446777665
Q ss_pred HHHHH
Q psy14500 268 LERRL 272 (938)
Q Consensus 268 ~~~~~ 272 (938)
.-...
T Consensus 305 ~a~~v 309 (337)
T TIGR02030 305 VAVLA 309 (337)
T ss_pred HHHHH
Confidence 44433
No 313
>PRK06893 DNA replication initiation factor; Validated
Probab=99.35 E-value=9.4e-12 Score=129.93 Aligned_cols=163 Identities=16% Similarity=0.244 Sum_probs=108.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
.++|+||||||||+|++++++.+...+....++.+...... ...+...++ ...+|+|||+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~------------------~~~~~~~~~--~~dlLilDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF------------------SPAVLENLE--QQDLVCLDDL 100 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh------------------hHHHHhhcc--cCCEEEEeCh
Confidence 58999999999999999999998655556555555321100 001111122 3359999999
Q ss_pred cccC--HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCC
Q psy14500 539 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID 616 (938)
Q Consensus 539 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~ 616 (938)
+.+. +..+..|+.+++... .....++|+|+|..+..+. ...+++.+|+.
T Consensus 101 ~~~~~~~~~~~~l~~l~n~~~---------~~~~~illits~~~p~~l~--------------------~~~~~L~sRl~ 151 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNRIK---------EQGKTLLLISADCSPHALS--------------------IKLPDLASRLT 151 (229)
T ss_pred hhhcCChHHHHHHHHHHHHHH---------HcCCcEEEEeCCCChHHcc--------------------ccchhHHHHHh
Confidence 9874 445567888776411 1123456788888766542 23478889884
Q ss_pred --eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHH
Q psy14500 617 --DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSIL 685 (938)
Q Consensus 617 --~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~ 685 (938)
.++.+.+++.+++.+|+.+.+. ..+ +.++++++++|+... -||++.....++++
T Consensus 152 ~g~~~~l~~pd~e~~~~iL~~~a~-------~~~--l~l~~~v~~~L~~~~------~~d~r~l~~~l~~l 207 (229)
T PRK06893 152 WGEIYQLNDLTDEQKIIVLQRNAY-------QRG--IELSDEVANFLLKRL------DRDMHTLFDALDLL 207 (229)
T ss_pred cCCeeeCCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHhc------cCCHHHHHHHHHHH
Confidence 4889999999999999765443 224 889999999999832 34555544445544
No 314
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.35 E-value=3.2e-11 Score=137.65 Aligned_cols=203 Identities=14% Similarity=0.150 Sum_probs=126.8
Q ss_pred cCCCCCcc-ccHH--HHHHHHHHHhcC--CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14500 27 LGKLDPVI-GRDD--EIRRAIQVLQRR--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 101 (938)
Q Consensus 27 ~~~~~~lv-G~~~--~~~~l~~~l~~~--~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~ 101 (938)
+.+|+.+| |.+. ++..+..+...+ ..++++|+|++|+|||+|++++++.+.... | +..++.++...+...
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-~----~~~v~yv~~~~f~~~ 185 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-S----DLKVSYMSGDEFARK 185 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHHH
Confidence 35888886 4433 333344443322 235688999999999999999999874321 1 566777777655421
Q ss_pred ccccchHH---HHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhc
Q psy14500 102 TKYRGEFE---DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEK 178 (938)
Q Consensus 102 ~~~~g~~~---~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~l 178 (938)
+..... ..+..+..... ..-+|+|||++.+.... .....+...+....+.+.. +|.+++.++ ...-.+
T Consensus 186 --~~~~l~~~~~~~~~~~~~~~---~~dvLiIDDiq~l~~k~--~~~e~lf~l~N~~~~~~k~-iIltsd~~P-~~l~~l 256 (450)
T PRK14087 186 --AVDILQKTHKEIEQFKNEIC---QNDVLIIDDVQFLSYKE--KTNEIFFTIFNNFIENDKQ-LFFSSDKSP-ELLNGF 256 (450)
T ss_pred --HHHHHHHhhhHHHHHHHHhc---cCCEEEEeccccccCCH--HHHHHHHHHHHHHHHcCCc-EEEECCCCH-HHHhhc
Confidence 111111 11222222222 23399999999885421 0112244444455566654 445544432 122357
Q ss_pred CHHHHcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHH
Q psy14500 179 DAAFERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 251 (938)
Q Consensus 179 d~al~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 251 (938)
++.+.+||. .+.+.+|+.+++.+|+++.++... ....++++++.+++..+.+.+ +.+..++..+.
T Consensus 257 ~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g--l~~~l~~evl~~Ia~~~~gd~------R~L~gaL~~l~ 324 (450)
T PRK14087 257 DNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN--IKQEVTEEAINFISNYYSDDV------RKIKGSVSRLN 324 (450)
T ss_pred cHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHccCCCH------HHHHHHHHHHH
Confidence 899999997 488999999999999998776521 123799999999999988877 76666666554
No 315
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.35 E-value=1e-11 Score=137.32 Aligned_cols=161 Identities=20% Similarity=0.371 Sum_probs=110.7
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC-c---e----EEec-ccccc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-S---I----IRID-MSEFI 497 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~-~---~----~~~~-~~~~~ 497 (938)
..|+||+.+++.+.+++...+.. +.+||+||+|+||+++|.++|+.++.... . . ..+. |..
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~--------HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~-- 88 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLH--------HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPD-- 88 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCC--------ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCC--
Confidence 46899999999999999865532 36999999999999999999999964321 0 0 0000 111
Q ss_pred chhhhhhhc--CCCCC-----------------CccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhc
Q psy14500 498 EKHSISRLI--GAPPG-----------------YIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILD 554 (938)
Q Consensus 498 ~~~~~~~l~--g~~~~-----------------~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le 554 (938)
....+.+ |.-++ .++.+..+.+...+. ...+.|++|||+|.+++..+|.||+.++
T Consensus 89 --c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LE 166 (365)
T PRK07471 89 --HPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLE 166 (365)
T ss_pred --ChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHh
Confidence 0011111 11111 112222233333332 2446899999999999999999999999
Q ss_pred CCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH
Q psy14500 555 DGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 634 (938)
Q Consensus 555 ~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~ 634 (938)
+ +..+++||++|+.... +.|.+.+|| ..+.|+|++.+++.+++.
T Consensus 167 e-----------pp~~~~~IL~t~~~~~------------------------llpti~SRc-~~i~l~~l~~~~i~~~L~ 210 (365)
T PRK07471 167 E-----------PPARSLFLLVSHAPAR------------------------LLPTIRSRC-RKLRLRPLAPEDVIDALA 210 (365)
T ss_pred c-----------CCCCeEEEEEECCchh------------------------chHHhhccc-eEEECCCCCHHHHHHHHH
Confidence 7 5567788888876432 457889999 599999999999988865
Q ss_pred H
Q psy14500 635 I 635 (938)
Q Consensus 635 ~ 635 (938)
.
T Consensus 211 ~ 211 (365)
T PRK07471 211 A 211 (365)
T ss_pred H
Confidence 4
No 316
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.34 E-value=7e-12 Score=133.75 Aligned_cols=154 Identities=12% Similarity=0.110 Sum_probs=109.9
Q ss_pred CccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHH-
Q psy14500 32 PVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFED- 110 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~- 110 (938)
..+-..+..+.++..+.. ..++||.||||||||++++.+|+.+ +.+++.+++..........|...-
T Consensus 46 ~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~ 113 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIV 113 (327)
T ss_pred CccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceee
Confidence 455566677777777654 4689999999999999999999999 778888877655443333332110
Q ss_pred ---------HHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc----------------CCceEEEE
Q psy14500 111 ---------RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS----------------RGELHCIG 165 (938)
Q Consensus 111 ---------~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~----------------~~~i~vI~ 165 (938)
-....+..|. ..+++|++||++...+ ++++.|..+|+ ...+++|+
T Consensus 114 l~~g~~~~~f~~GpL~~A~--~~g~illlDEin~a~p--------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviA 183 (327)
T TIGR01650 114 LKDGKQITEFRDGILPWAL--QHNVALCFDEYDAGRP--------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFA 183 (327)
T ss_pred ccCCcceeEEecCcchhHH--hCCeEEEechhhccCH--------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEE
Confidence 0112233333 2356899999998843 44444444443 23578999
Q ss_pred ecChhH-------HHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhh
Q psy14500 166 ATTLNE-------YRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQ 207 (938)
Q Consensus 166 ~tn~~~-------~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~ 207 (938)
|+|+.+ |.....+++++++||.. +.+..|+.++-.+|+....
T Consensus 184 T~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 184 TANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 999976 77888999999999985 6899999999999987543
No 317
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=1.2e-11 Score=136.10 Aligned_cols=156 Identities=17% Similarity=0.137 Sum_probs=113.1
Q ss_pred CCCCccc-cHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCCCc--------------CCCeEEE
Q psy14500 29 KLDPVIG-RDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNSL--------------LSKKILL 92 (938)
Q Consensus 29 ~~~~lvG-~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~~~--------------~~~~~~~ 92 (938)
.++.++| |+.+++.+...+..++.+|. ||+||+|+|||++|+++++.+.+....... .-..+..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 3567888 88899999999988887886 999999999999999999998654210000 0001222
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEec
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGAT 167 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~t 167 (938)
+.... .. -....++.+...+. ..++..|+||||+|.|. .+++|.|+..+|+ +.+.+|.+|
T Consensus 83 i~~~~----~~---i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 83 VAPDG----QS---IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------ASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred ecccc----cc---CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------HHHHHHHHHHhcCCCCCceEEEEe
Confidence 22110 10 01124666666554 22345699999999993 4678899999986 578888888
Q ss_pred ChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHH
Q psy14500 168 TLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILR 204 (938)
Q Consensus 168 n~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~ 204 (938)
+.+. .+.++++|||..++|++|+.++....++
T Consensus 148 ~~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 148 ENKH-----QILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred CChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 8776 8899999999999999999998877765
No 318
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.4e-12 Score=138.35 Aligned_cols=176 Identities=22% Similarity=0.249 Sum_probs=117.8
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC-C------ceEE---------
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE-E------SIIR--------- 490 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~-~------~~~~--------- 490 (938)
++|+||+.+++.+..+..-.+ ++||+||||||||++|+.+...+-.-. . .+..
T Consensus 179 ~DV~GQ~~AKrAleiAAAGgH-----------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~ 247 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAGGH-----------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGC 247 (490)
T ss_pred hhhcCcHHHHHHHHHHHhcCC-----------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccC
Confidence 679999999999998886443 899999999999999999987661000 0 0000
Q ss_pred --eccccccchh---hhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC--C
Q psy14500 491 --IDMSEFIEKH---SISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR--G 563 (938)
Q Consensus 491 --~~~~~~~~~~---~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~--g 563 (938)
....-|...+ +...++|.. +....+.+..+.+|||||||+-.+...+++.|.+.||+|.++... .
T Consensus 248 ~~~~~rPFr~PHHsaS~~aLvGGG--------~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~ 319 (490)
T COG0606 248 PLKIHRPFRAPHHSASLAALVGGG--------GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGS 319 (490)
T ss_pred ccceeCCccCCCccchHHHHhCCC--------CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCC
Confidence 1111122221 222333321 111223445677899999999999999999999999999988654 3
Q ss_pred ceeecCCeEEEEecCCCchhhhh----hhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCH
Q psy14500 564 RTINFRNTIIVMTSNLGSDKIKE----MEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR 626 (938)
Q Consensus 564 ~~~~~~~~iiI~ttn~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~ 626 (938)
....+.+..+|+++|.-..-..+ .|.+......++ ..+++.+|++|||..+..+.++.
T Consensus 320 ~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y-----~~klSgp~lDRiDl~vev~~~~~ 381 (490)
T COG0606 320 KVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRY-----LNKLSGPFLDRIDLMVEVPRLSA 381 (490)
T ss_pred eeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHH-----HHHhhHHHHhhhhheecccCCCH
Confidence 44455788899999974432222 122344444444 44577899999999999988874
No 319
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.34 E-value=1.4e-11 Score=129.10 Aligned_cols=158 Identities=11% Similarity=0.156 Sum_probs=112.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEcc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 537 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDE 537 (938)
.+++|+||+|||||++|+++++.+...+.++..+++....... . ......+|+|||
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~----------------------~--~~~~~~~liiDd 98 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF----------------------D--FDPEAELYAVDD 98 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH----------------------h--hcccCCEEEEeC
Confidence 3799999999999999999999987778888888887653210 0 011246999999
Q ss_pred ccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCC-
Q psy14500 538 IEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID- 616 (938)
Q Consensus 538 id~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~- 616 (938)
++.+++..+..|+.+++... .....++|++++.++. ...+.+++.+|+.
T Consensus 99 i~~l~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~~~---------------------~~~l~~~L~sr~~~ 148 (227)
T PRK08903 99 VERLDDAQQIALFNLFNRVR---------AHGQGALLVAGPAAPL---------------------ALPLREDLRTRLGW 148 (227)
T ss_pred hhhcCchHHHHHHHHHHHHH---------HcCCcEEEEeCCCCHH---------------------hCCCCHHHHHHHhc
Confidence 99999999999999986411 1122346666665332 1236688999983
Q ss_pred -eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHH
Q psy14500 617 -DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKS 681 (938)
Q Consensus 617 -~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~ 681 (938)
..+.++|++.++...++... +...+ +.++++++++|++ . |..+++.+.+.++.
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~-------~~~~~--v~l~~~al~~L~~-~--~~gn~~~l~~~l~~ 202 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAA-------AAERG--LQLADEVPDYLLT-H--FRRDMPSLMALLDA 202 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHH-------HHHcC--CCCCHHHHHHHHH-h--ccCCHHHHHHHHHH
Confidence 59999999998766664432 22334 7799999999988 3 44556666666333
No 320
>KOG0375|consensus
Probab=99.34 E-value=1.8e-12 Score=132.91 Aligned_cols=146 Identities=20% Similarity=0.302 Sum_probs=101.9
Q ss_pred ccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcC----CccEEEcCCChHHH-HHHHhc
Q psy14500 668 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHL-LDVLIN 742 (938)
Q Consensus 668 ~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~----~~~~~v~GNHe~~~-l~~~~~ 742 (938)
|.-.+|||||.+-.|.++.+- +-++...+++|+|||||||-.|++|+-+++.++ .....++||||..- -+|+..
T Consensus 89 PiTVCGDIHGQf~DLmKLFEV-GG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFTF 167 (517)
T KOG0375|consen 89 PITVCGDIHGQFFDLMKLFEV-GGSPANTRYLFLGDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFTF 167 (517)
T ss_pred CeeEecccchHHHHHHHHHHc-cCCcccceeEeeccccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhhH
Confidence 556789999999999998854 446788899999999999999999999999983 45678999999654 455543
Q ss_pred cccCCccccHHHhhCCCCHHHHHHHHhcCCce-EEeCCEEEEecccCcCC-CHHHHHHHhHHHHHHhhhccHHHHHHHhc
Q psy14500 743 INKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYYKKYLMIHAGVAKQW-TAQQTIKLSHQVEKILRTSYWKNLFFKLY 820 (938)
Q Consensus 743 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~-~~~~~~~~vHAg~~p~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 820 (938)
...-.-+ ....-++..++-+..||+. +-.+.|++||||++|+. +.++-..+.+.-+..-.|+
T Consensus 168 KqEc~iK------Yse~vYdaCmesFd~LPLAAlmNqQflCVHGGlSPEi~tl~DIr~l~RF~EpPa~Gp---------- 231 (517)
T KOG0375|consen 168 KQECKIK------YSERVYDACMESFDCLPLAALMNQQFLCVHGGLSPEIHTLDDIRKLDRFKEPPAFGP---------- 231 (517)
T ss_pred HHHHhHh------ccHHHHHHHHHHhccchHHHHhcCceEEecCCCCcccccHHHHHhhhhccCCCccCc----------
Confidence 2110000 0111246788889999998 45678999999999984 3444444444332221222
Q ss_pred CCCCCCCCccc
Q psy14500 821 NHNSINWDNHL 831 (938)
Q Consensus 821 ~~~~~~w~~~~ 831 (938)
.++..|++.+
T Consensus 232 -mCDLLWsDPl 241 (517)
T KOG0375|consen 232 -MCDLLWSDPL 241 (517)
T ss_pred -chhhhccChh
Confidence 2667788776
No 321
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.34 E-value=3.1e-11 Score=137.65 Aligned_cols=202 Identities=15% Similarity=0.313 Sum_probs=126.8
Q ss_pred CCCC-ccccHHH--HHHHHHHHhcC--CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14500 29 KLDP-VIGRDDE--IRRAIQVLQRR--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 103 (938)
Q Consensus 29 ~~~~-lvG~~~~--~~~l~~~l~~~--~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~ 103 (938)
+|+. ++|.+.. ...+..+...+ ..++++|+||||+|||+|++++++++.... | +..++.+++..+.. .
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~----~~~v~yi~~~~~~~--~ 180 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-P----NAKVVYVSSEKFTN--D 180 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-C----CCcEEEEEHHHHHH--H
Confidence 7777 4575543 33333333332 224679999999999999999999885431 1 45677777765431 1
Q ss_pred ccchHH-HHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHHH
Q psy14500 104 YRGEFE-DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAF 182 (938)
Q Consensus 104 ~~g~~~-~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al 182 (938)
+..... .....+...+.. ..+|+|||++.+.+... ....+...+....+.+..++|+++..+. ....+++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~---~dlLiiDDi~~l~~~~~--~~~~l~~~~n~~~~~~~~iiits~~~p~--~l~~l~~~l 253 (405)
T TIGR00362 181 FVNALRNNKMEEFKEKYRS---VDLLLIDDIQFLAGKER--TQEEFFHTFNALHENGKQIVLTSDRPPK--ELPGLEERL 253 (405)
T ss_pred HHHHHHcCCHHHHHHHHHh---CCEEEEehhhhhcCCHH--HHHHHHHHHHHHHHCCCCEEEecCCCHH--HHhhhhhhh
Confidence 111110 011222223332 23999999999854321 0112334444444555555555544443 122468899
Q ss_pred Hcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHH
Q psy14500 183 ERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 254 (938)
Q Consensus 183 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 254 (938)
.+||. .+.|++|+.++|..|++..+.. .++.++++++..++....+.+ +.....+.......
T Consensus 254 ~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~~~------r~l~~~l~~l~~~a 318 (405)
T TIGR00362 254 RSRFEWGLVVDIEPPDLETRLAILQKKAEE----EGLELPDEVLEFIAKNIRSNV------RELEGALNRLLAYA 318 (405)
T ss_pred hhhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH------HHHHHHHHHHHHHH
Confidence 99996 4999999999999999988775 478899999999999887766 66555665555443
No 322
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.33 E-value=6.3e-11 Score=130.81 Aligned_cols=212 Identities=18% Similarity=0.247 Sum_probs=146.4
Q ss_pred CCccccHHHHHHHHHHHh----cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc------
Q psy14500 31 DPVIGRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA------ 100 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~----~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~------ 100 (938)
+.+.+|+++++++...|. ...+.|++++|+||||||++++.+++++..... +..++.+||.....
T Consensus 17 ~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~-----~~~~~yINc~~~~t~~~i~~ 91 (366)
T COG1474 17 EELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSA-----NVEVVYINCLELRTPYQVLS 91 (366)
T ss_pred ccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhc-----cCceEEEeeeeCCCHHHHHH
Confidence 348899999988887654 677788999999999999999999999855321 22256677743221
Q ss_pred -------Cccccch-HHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc--CCceEEEEecChh
Q psy14500 101 -------GTKYRGE-FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS--RGELHCIGATTLN 170 (938)
Q Consensus 101 -------~~~~~g~-~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~--~~~i~vI~~tn~~ 170 (938)
.....|. ..+.++.+.+.....+...|++|||+|.|..... +..-.|..... ...+.+|+.+|..
T Consensus 92 ~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----~~LY~L~r~~~~~~~~v~vi~i~n~~ 166 (366)
T COG1474 92 KILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----EVLYSLLRAPGENKVKVSIIAVSNDD 166 (366)
T ss_pred HHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----hHHHHHHhhccccceeEEEEEEeccH
Confidence 1111222 2234455555555556788999999999977542 22222222222 2457889999988
Q ss_pred HHHHhhhcCHHHHcccce--EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHH
Q psy14500 171 EYRQYIEKDAAFERRFQK--ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 248 (938)
Q Consensus 171 ~~~~~~~ld~al~~Rf~~--i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 248 (938)
.+.. .+++.+.++|.. |.|++++.+|...|++.-.+.- ...-.+++.+++.++..+...-+ -.++++++|+
T Consensus 167 ~~~~--~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~lia~~~a~~~G---DAR~aidilr 239 (366)
T COG1474 167 KFLD--YLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--FSAGVIDDDVLKLIAALVAAESG---DARKAIDILR 239 (366)
T ss_pred HHHH--HhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCcCccHHHHHHHHHHHcCc---cHHHHHHHHH
Confidence 7633 679999999974 8899999999999998655531 23456889999888876654322 3389999999
Q ss_pred HHHHHHHHhhc
Q psy14500 249 EAAAKIKIEID 259 (938)
Q Consensus 249 ~a~~~~~~~~~ 259 (938)
.|+..+.....
T Consensus 240 ~A~eiAe~~~~ 250 (366)
T COG1474 240 RAGEIAEREGS 250 (366)
T ss_pred HHHHHHHhhCC
Confidence 99887764443
No 323
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.33 E-value=2.6e-11 Score=139.01 Aligned_cols=185 Identities=19% Similarity=0.219 Sum_probs=116.4
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh---h--
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH---S-- 501 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~---~-- 501 (938)
+.++||..+++.+..++... .+++|.||||||||++|++++..+...... ..++...+.+.. .
T Consensus 192 ~dv~Gq~~~~~al~~aa~~g-----------~~vlliG~pGsGKTtlar~l~~llp~~~~~-~~le~~~i~s~~g~~~~~ 259 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAAGG-----------HNLLLFGPPGSGKTMLASRLQGILPPLTNE-EAIETARIWSLVGKLIDR 259 (499)
T ss_pred HHhcCcHHHHhhhhhhccCC-----------CEEEEEecCCCCHHHHHHHHhcccCCCCCc-EEEeccccccchhhhccc
Confidence 45789999988777766422 379999999999999999999876322111 122222211000 0
Q ss_pred --h-hhhcC------CCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceec--CCCceeecCC
Q psy14500 502 --I-SRLIG------APPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD--NRGRTINFRN 570 (938)
Q Consensus 502 --~-~~l~g------~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~--~~g~~~~~~~ 570 (938)
. .+=|- ...+.+|... ..-.+.+..+.++||||||++.+++.+|+.|++.||+|.++. .++......+
T Consensus 260 ~~~~~~Pf~~p~~s~s~~~~~ggg~-~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~ 338 (499)
T TIGR00368 260 KQIKQRPFRSPHHSASKPALVGGGP-IPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPAR 338 (499)
T ss_pred cccccCCccccccccchhhhhCCcc-ccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCC
Confidence 0 00000 0000111100 012345677788999999999999999999999999998753 2233334578
Q ss_pred eEEEEecCCCchhh----hhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHH
Q psy14500 571 TIIVMTSNLGSDKI----KEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNI 629 (938)
Q Consensus 571 ~iiI~ttn~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~ 629 (938)
+.+|+++|..+.-. ...|.++..++.++ ..+++.+|++|||..+.+++++.+++
T Consensus 339 frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y-----~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 339 FQLVAAMNPCPCGHYGGKNTHCRCSPQQISRY-----WNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred eEEEEecCCcccCcCCCCcccccCCHHHHHHH-----hhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 89999999643111 12233444454444 44689999999999999998876544
No 324
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=1.3e-11 Score=135.72 Aligned_cols=156 Identities=18% Similarity=0.295 Sum_probs=108.3
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++||+.+++.+...+...+. .+.+||+||+|+|||++|+.+|+.++.....-...|+..+..
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~--------~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~-------- 67 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRF--------SHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKP-------- 67 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCC--------CceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEecc--------
Confidence 5688999999999999875442 246899999999999999999998853221100001111100
Q ss_pred CCCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCch
Q psy14500 507 GAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 582 (938)
Q Consensus 507 g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~ 582 (938)
.....++.+..+.+...+. .+.+.|++||++|+++.+.+|+||+.||+ +..+++||++|+...
T Consensus 68 -~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-----------pp~~t~~il~~~~~~- 134 (313)
T PRK05564 68 -INKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-----------PPKGVFIILLCENLE- 134 (313)
T ss_pred -ccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEeCChH-
Confidence 0001122222233333222 23467999999999999999999999998 667788888876422
Q ss_pred hhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHH
Q psy14500 583 KIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI 635 (938)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~ 635 (938)
.+.|.+.+|| .++.|.+++.+++...+..
T Consensus 135 -----------------------~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 135 -----------------------QILDTIKSRC-QIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred -----------------------hCcHHHHhhc-eeeeCCCcCHHHHHHHHHH
Confidence 3678899999 5999999999998777543
No 325
>PRK04132 replication factor C small subunit; Provisional
Probab=99.32 E-value=1.3e-11 Score=147.49 Aligned_cols=161 Identities=19% Similarity=0.241 Sum_probs=129.8
Q ss_pred EEEc--CCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcC-----CCeEE
Q psy14500 56 VLIG--EPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQ-----KDIII 128 (938)
Q Consensus 56 LL~G--p~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~-----~~~iL 128 (938)
+..| |.+.||||+|+++|+.+...+ .+..++++|+++..+ ...++.++..+.... +..|+
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~-----~~~~~lElNASd~rg--------id~IR~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGEN-----WRHNFLELNASDERG--------INVIREKVKEFARTKPIGGASFKII 634 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhccc-----ccCeEEEEeCCCccc--------HHHHHHHHHHHHhcCCcCCCCCEEE
Confidence 6668 999999999999999873321 145788888865321 114566665543221 23699
Q ss_pred EEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhh
Q psy14500 129 FIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL 206 (938)
Q Consensus 129 ~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~ 206 (938)
||||+|.|. .++++.|+..|+. +.+.+|++||++. .+.++++|||..+.|++|+.++....|+.+
T Consensus 635 IIDEaD~Lt--------~~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 635 FLDEADALT--------QDAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred EEECcccCC--------HHHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHHHHHHHH
Confidence 999999994 3678899999995 7899999999987 889999999999999999999999999988
Q ss_pred hhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHH
Q psy14500 207 QKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 207 ~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 252 (938)
+++ +++.++++++..++..|.+.+ +.++.+++.++.
T Consensus 702 ~~~----Egi~i~~e~L~~Ia~~s~GDl------R~AIn~Lq~~~~ 737 (846)
T PRK04132 702 AEN----EGLELTEEGLQAILYIAEGDM------RRAINILQAAAA 737 (846)
T ss_pred HHh----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHHH
Confidence 875 578899999999999999988 999999987654
No 326
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.32 E-value=2e-11 Score=130.26 Aligned_cols=156 Identities=19% Similarity=0.272 Sum_probs=108.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCC--ccccc----cchhHHHHHhCCCEE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY--IGYEE----GGYLTEIVRRKPYSL 532 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~--~g~~~----~~~l~~~~~~~~~~v 532 (938)
++||.||||||||++|+.+|+.+ +.+++++++...... ..++|...-. .|... .+.+..+. ..+++
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~---~DliG~~~~~l~~g~~~~~f~~GpL~~A~--~~g~i 137 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSR---IDLVGKDAIVLKDGKQITEFRDGILPWAL--QHNVA 137 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCCh---hhcCCCceeeccCCcceeEEecCcchhHH--hCCeE
Confidence 69999999999999999999999 789999999876543 3355543211 11110 12222222 23578
Q ss_pred EEEccccccCHHHHHHHHHhhc-CCceecC-CCceee-cCCeEEEEecCCCc-hhhhhhhcchHHHHHHHHHHHHhhccC
Q psy14500 533 ILLDEIEKANSDVFNILLQILD-DGRLTDN-RGRTIN-FRNTIIVMTSNLGS-DKIKEMEKGDKEIIKLAVMNEVKIYFR 608 (938)
Q Consensus 533 l~lDEid~~~~~~~~~Ll~~le-~g~~~~~-~g~~~~-~~~~iiI~ttn~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~ 608 (938)
|++||++.++|++++.|..+|| +|.++.. .++.+. ..+..+|+|+|... ..-...+. =.+.++
T Consensus 138 lllDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~-------------Gt~~l~ 204 (327)
T TIGR01650 138 LCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYH-------------GTQQIN 204 (327)
T ss_pred EEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCccee-------------eeecCC
Confidence 9999999999999999999999 4677654 466663 45788999999621 10000000 012368
Q ss_pred hHHhhcCCeEEEccCCCHHHHHHHHHH
Q psy14500 609 PEFINRIDDIIVFRYLNRKNILSIANI 635 (938)
Q Consensus 609 ~~l~~R~~~~i~f~~l~~e~~~~i~~~ 635 (938)
+.+++||-.++.+..++.++-.+|+..
T Consensus 205 ~A~lDRF~i~~~~~Yp~~e~E~~Il~~ 231 (327)
T TIGR01650 205 QAQMDRWSIVTTLNYLEHDNEAAIVLA 231 (327)
T ss_pred HHHHhheeeEeeCCCCCHHHHHHHHHh
Confidence 899999965678999999888888654
No 327
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.32 E-value=5.5e-12 Score=139.36 Aligned_cols=181 Identities=17% Similarity=0.270 Sum_probs=125.4
Q ss_pred CCCCCccccHHHHHHHHHHHh--cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh------
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL------ 99 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~--~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~------ 99 (938)
.+|++|||.+.++.+++.... .....+|||.|++||||..+|+++++...+. +.+++.+||+++-
T Consensus 242 y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~-------~~PFIaiNCaAiPe~LlES 314 (560)
T COG3829 242 YTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRA-------NGPFIAINCAAIPETLLES 314 (560)
T ss_pred cchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCccc-------CCCeEEEecccCCHHHHHH
Confidence 489999999999999888766 4667889999999999999999999987665 5678888986542
Q ss_pred -----cCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ce
Q psy14500 100 -----AGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------EL 161 (938)
Q Consensus 100 -----~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i 161 (938)
..+.+.|.....-..+|+.|. + .-||||||..| +...+..|+.+|+.+ +|
T Consensus 315 ELFGye~GAFTGA~~~GK~GlfE~A~--g--GTLFLDEIgem--------pl~LQaKLLRVLQEkei~rvG~t~~~~vDV 382 (560)
T COG3829 315 ELFGYEKGAFTGASKGGKPGLFELAN--G--GTLFLDEIGEM--------PLPLQAKLLRVLQEKEIERVGGTKPIPVDV 382 (560)
T ss_pred HHhCcCCccccccccCCCCcceeecc--C--CeEEehhhccC--------CHHHHHHHHHHHhhceEEecCCCCceeeEE
Confidence 112233333222345555554 2 27999999999 457888899988643 57
Q ss_pred EEEEecChhHHHHhh---hcCHHHHcccceEEeeCCCHHHH----HHHHHhhhhhhhcccC--CC-CCHHHHHHHHH
Q psy14500 162 HCIGATTLNEYRQYI---EKDAAFERRFQKILVEEPDIEET----ISILRGLQKKYEVHHG--VE-ITDPAIVAASE 228 (938)
Q Consensus 162 ~vI~~tn~~~~~~~~---~ld~al~~Rf~~i~~~~p~~~e~----~~il~~~~~~~~~~~~--~~-i~~~~l~~~~~ 228 (938)
++|+|||.+. .+.. ..-..|.-|+.++.+..|+..+| ..+..+++.++....+ +. ++++++..+..
T Consensus 383 RIIAATN~nL-~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~ 458 (560)
T COG3829 383 RIIAATNRNL-EKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLR 458 (560)
T ss_pred EEEeccCcCH-HHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHh
Confidence 8999999864 2211 12244555888877777755544 4555777776655444 33 67777665443
No 328
>KOG0371|consensus
Probab=99.31 E-value=1.6e-12 Score=128.01 Aligned_cols=222 Identities=18% Similarity=0.311 Sum_probs=138.5
Q ss_pred ccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcC----CccEEEcCCChHHHHHHHhcc
Q psy14500 668 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLINI 743 (938)
Q Consensus 668 ~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~----~~~~~v~GNHe~~~l~~~~~~ 743 (938)
+...+||+||+++.+..+. +++-..+....+|.||++|||+.|++++.++..++ +.+.+|+||||-..+..+.+
T Consensus 61 pvtvcGDvHGqf~dl~ELf-kiGG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvyg- 138 (319)
T KOG0371|consen 61 PVTVCGDVHGQFHDLIELF-KIGGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYG- 138 (319)
T ss_pred ceEEecCcchhHHHHHHHH-HccCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHh-
Confidence 4456899999999998888 55556788899999999999999999999998885 68999999999776654433
Q ss_pred ccCCccccHHHhhCCC----CHHHHHHHHhcCCceE-EeCCEEEEecccCcCCCHHHHHHHhHHHHHHhh-hccHHHHHH
Q psy14500 744 NKKSKLDTFDDILDAP----DKKKLVSWLRTQPLAI-YYKKYLMIHAGVAKQWTAQQTIKLSHQVEKILR-TSYWKNLFF 817 (938)
Q Consensus 744 ~~~~~~~~~~~~~~~~----~~~~~~~~l~~lp~~~-~~~~~~~vHAg~~p~~~~~~~~~~~~~~~~~l~-~~~~~~~~~ 817 (938)
.++++++.. -...+-+.+.-+|+.- ..+++++.|||++|+....+..+..+...++-. |+.
T Consensus 139 -------fydeclRkyg~anvw~~Ftdlfdy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evphegpm------ 205 (319)
T KOG0371|consen 139 -------FYDECLRKYGNANVWKYFTDLFDYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEGPM------ 205 (319)
T ss_pred -------hHHHHHhhcccccchHHhhhhhhccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCCCh------
Confidence 233443332 2344555566678664 345899999999998776665555444333221 222
Q ss_pred HhcCCCCCCCCccccc----cccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCCc--CCCc
Q psy14500 818 KLYNHNSINWDNHLHT----IHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRK--TIDI 891 (938)
Q Consensus 818 ~~~~~~~~~w~~~~~~----~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~--~~~~ 891 (938)
++..|++.-.+ +.++|- .+.+-..-.+.|.+.+| +....+ ....-.++..|+..|+-. ...+
T Consensus 206 -----cDlLwsdpddr~gwg~sprga---g~tfg~di~~~fn~~n~-lslisR---ahqlvm~g~nW~~~~~~vtiFSap 273 (319)
T KOG0371|consen 206 -----CDLLWSDPDDRCGWGISPRGA---GYTFGQDISEQFNHKNG-LSLISR---AHQLVMEGYNWYHLWNVVTIFSAP 273 (319)
T ss_pred -----hheeccCcccCCCCCCCCCCC---CcccchhhHHHhhccCC-chHhHH---HHHHHhcccceeeecceeEEccCC
Confidence 23344433211 111110 01111122344444433 111111 122335788999999863 4567
Q ss_pred eEEEccCCCcCcccCCCeEEecccc
Q psy14500 892 TVLFGHWSTLGLIMKPNIICLDTGC 916 (938)
Q Consensus 892 ~vv~GH~~~~~~~~~~~~~~lDtG~ 916 (938)
.++|||.+..++.......+.|+-|
T Consensus 274 nycYrcgn~a~i~e~d~~~~~~f~q 298 (319)
T KOG0371|consen 274 NYCYRCGNQAAIMERDDTKNYDFLQ 298 (319)
T ss_pred chhhccccHHHHhhhhhccCcceEE
Confidence 8899999888776555554444433
No 329
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=1.1e-11 Score=136.23 Aligned_cols=163 Identities=18% Similarity=0.270 Sum_probs=107.9
Q ss_pred ccccC-hHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC--ceEEecccc---ccch-
Q psy14500 427 KRVVG-QDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSE---FIEK- 499 (938)
Q Consensus 427 ~~viG-q~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~---~~~~- 499 (938)
..|+| |+.+++.+...+...+. .+.+||+||+|+||+++|+++|+.++.... ...+..|.. +...
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~l--------~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~ 76 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNRL--------SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGN 76 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCC
Confidence 44667 99999999999875542 246899999999999999999999854321 101111111 1000
Q ss_pred hhhhhhcCCCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEE
Q psy14500 500 HSISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 575 (938)
Q Consensus 500 ~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 575 (938)
+.....+......++.+..+.+...+. .+.+.|++|||+|+++.+.+|+||+.||+ +..+++||+
T Consensus 77 hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-----------Pp~~~~~Il 145 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-----------PSGGTTAIL 145 (329)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-----------CCCCceEEE
Confidence 000000000000112222233333332 23467999999999999999999999998 677888888
Q ss_pred ecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHH
Q psy14500 576 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 633 (938)
Q Consensus 576 ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~ 633 (938)
+|+.. ..+.|.+.+|| .++.|.+++.+++.+++
T Consensus 146 ~t~~~------------------------~~ll~TIrSRc-~~i~~~~~~~~~~~~~L 178 (329)
T PRK08058 146 LTENK------------------------HQILPTILSRC-QVVEFRPLPPESLIQRL 178 (329)
T ss_pred EeCCh------------------------HhCcHHHHhhc-eeeeCCCCCHHHHHHHH
Confidence 88742 24678999999 59999999999886664
No 330
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.31 E-value=9.4e-11 Score=115.82 Aligned_cols=194 Identities=21% Similarity=0.306 Sum_probs=137.4
Q ss_pred CCCCccccHHHHHHHH----HHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccc
Q psy14500 29 KLDPVIGRDDEIRRAI----QVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKY 104 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~----~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~ 104 (938)
.+.+++|-+.+.+.|. .++...+.+||||+|..|||||+|++|+..++... +.++++++..++.
T Consensus 58 ~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~----- 125 (287)
T COG2607 58 DLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLA----- 125 (287)
T ss_pred CHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHh-----
Confidence 5668889777655554 46777888999999999999999999999988554 6679999887776
Q ss_pred cchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC------CceEEEEecChhHHHH-hh-
Q psy14500 105 RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR------GELHCIGATTLNEYRQ-YI- 176 (938)
Q Consensus 105 ~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~------~~i~vI~~tn~~~~~~-~~- 176 (938)
.+-.+++.++....+.|||+|++- +..+ .+....|+..|+. .+|++-+|+|+...-. .+
T Consensus 126 ------~Lp~l~~~Lr~~~~kFIlFcDDLS--Fe~g-----d~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~ 192 (287)
T COG2607 126 ------TLPDLVELLRARPEKFILFCDDLS--FEEG-----DDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMK 192 (287)
T ss_pred ------hHHHHHHHHhcCCceEEEEecCCC--CCCC-----chHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhh
Confidence 477888888888889999999875 3322 4566778888864 3688888888643110 00
Q ss_pred ---------------hcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHH-HHhhhhccccCCC
Q psy14500 177 ---------------EKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAA-SELSYRYISDRFM 239 (938)
Q Consensus 177 ---------------~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~-~~~s~~~~~~~~~ 239 (938)
.-.-++.+||.- +.|.+++.++-..|++++.+. .++.++++.+..- ...+.. ...-.
T Consensus 193 dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~----~~l~~~~e~l~~eAl~WAt~--rg~RS 266 (287)
T COG2607 193 DNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH----FGLDISDEELHAEALQWATT--RGGRS 266 (287)
T ss_pred hCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHh--cCCCc
Confidence 011246679996 999999999999999998876 4677766544322 222211 12224
Q ss_pred chhhhhHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAK 253 (938)
Q Consensus 240 p~~a~~ll~~a~~~ 253 (938)
++.|-++++..+..
T Consensus 267 GR~A~QF~~~~~g~ 280 (287)
T COG2607 267 GRVAWQFIRDLAGR 280 (287)
T ss_pred cHhHHHHHHHHHhh
Confidence 56677776665543
No 331
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.31 E-value=3.3e-11 Score=133.97 Aligned_cols=184 Identities=21% Similarity=0.247 Sum_probs=128.3
Q ss_pred CCccccHHHHHHHHHHHh-cCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCCc--------------CCCeEEEEe
Q psy14500 31 DPVIGRDDEIRRAIQVLQ-RRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNSL--------------LSKKILLLD 94 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~-~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~--------------~~~~~~~~~ 94 (938)
+++++.+....++..+.. ....+| +||+||||+|||++|.++|+.+.+....... ....+++++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 367889999999888877 555777 9999999999999999999999654321111 123667777
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecCh
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTL 169 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~ 169 (938)
.++..... -....++.+....... ++..|++|||+|.|.. +++++++..++. .+..+|.+||.
T Consensus 81 ~s~~~~~~----i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 81 PSDLRKID----IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------DAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred ccccCCCc----chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH--------HHHHHHHHHhccCCCCeEEEEEcCC
Confidence 65543211 1233455555555433 3457999999999944 778889988874 57889999997
Q ss_pred hHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHH
Q psy14500 170 NEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 249 (938)
Q Consensus 170 ~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 249 (938)
+. .+-+++++||..++|++|+......... +.++..++..+.+++ +.++..+..
T Consensus 149 ~~-----~il~tI~SRc~~i~f~~~~~~~~i~~~e---------------~~~l~~i~~~~~gd~------r~~i~~lq~ 202 (325)
T COG0470 149 PS-----KILPTIRSRCQRIRFKPPSRLEAIAWLE---------------DQGLEEIAAVAEGDA------RKAINPLQA 202 (325)
T ss_pred hh-----hccchhhhcceeeecCCchHHHHHHHhh---------------ccchhHHHHHHHHHH------HcCCCHHHH
Confidence 76 7888999999999998854433322222 455666777777777 555555555
Q ss_pred HHH
Q psy14500 250 AAA 252 (938)
Q Consensus 250 a~~ 252 (938)
.+.
T Consensus 203 ~~~ 205 (325)
T COG0470 203 LAA 205 (325)
T ss_pred HHH
Confidence 443
No 332
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.31 E-value=1e-11 Score=125.00 Aligned_cols=212 Identities=16% Similarity=0.237 Sum_probs=143.1
Q ss_pred HhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHh---ccCCCceEEeccccccchh
Q psy14500 424 LLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACI---FNNEESIIRIDMSEFIEKH 500 (938)
Q Consensus 424 ~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l---~~~~~~~~~~~~~~~~~~~ 500 (938)
.|++.|.-...+...+.+.+.+.... ...++||.||+|.|||.+|+.|-+.- ..-..+|+.+||..+....
T Consensus 181 ~lksgiatrnp~fnrmieqierva~r------sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~ 254 (531)
T COG4650 181 FLKSGIATRNPHFNRMIEQIERVAIR------SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDT 254 (531)
T ss_pred HHHhcccccChHHHHHHHHHHHHHhh------ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCch
Confidence 35555555556566666655544321 12369999999999999999886543 1225699999999999999
Q ss_pred hhhhhcCCCCC-CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCC
Q psy14500 501 SISRLIGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 579 (938)
Q Consensus 501 ~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 579 (938)
..+.+||+..| +.|..+. -.+.++.+.++.||+|||..+..+-|..||+.+|+.++.+-+...--.++..+|+.|-.
T Consensus 255 amsalfghvkgaftga~~~--r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvr 332 (531)
T COG4650 255 AMSALFGHVKGAFTGARES--REGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVR 332 (531)
T ss_pred HHHHHHhhhccccccchhh--hhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHH
Confidence 99999999777 4444332 23567888999999999999999999999999999888764432222344555555543
Q ss_pred CchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCC--HHHHHHHHHHHHHHHHHHHHccCCeEEEcHH
Q psy14500 580 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN--RKNILSIANIQLNILKNKLLKMNMDLKISKA 656 (938)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~--~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 656 (938)
....+ ..+..|+.+++.||+. .+.+|-+. .+++..-+.-.+.+.. +..|-.+.+..+
T Consensus 333 dlrq~-----------------vaeg~fredl~arinlwtf~lpgl~qr~ediepnldyelerha---~~~g~~vrfnte 392 (531)
T COG4650 333 DLRQL-----------------VAEGKFREDLYARINLWTFTLPGLRQRQEDIEPNLDYELERHA---SLTGDSVRFNTE 392 (531)
T ss_pred HHHHH-----------------HhccchHHHHHHhhheeeeeccccccCccccCCCccHHHHHHH---HhhCceeeeehH
Confidence 22211 2356799999999963 34444432 3555554444444333 334666888887
Q ss_pred HHHHHHh
Q psy14500 657 ALKKISN 663 (938)
Q Consensus 657 ~~~~L~~ 663 (938)
+......
T Consensus 393 arra~l~ 399 (531)
T COG4650 393 ARRAWLA 399 (531)
T ss_pred HHHHHHH
Confidence 7666554
No 333
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.30 E-value=5.4e-12 Score=114.42 Aligned_cols=109 Identities=29% Similarity=0.458 Sum_probs=63.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCC--CEEEEEc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKP--YSLILLD 536 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~--~~vl~lD 536 (938)
++||.|+||+|||++|+++|+.+ +..|.++.+..-.. -+.++|.+. |.... +.+ . +...| ..|+++|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpdll---PsDi~G~~v-~~~~~--~~f-~-~~~GPif~~ill~D 69 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPDLL---PSDILGFPV-YDQET--GEF-E-FRPGPIFTNILLAD 69 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT-----HHHHHEEEE-EETTT--TEE-E-EEE-TT-SSEEEEE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCCCC---cccceeeee-eccCC--Cee-E-eecChhhhceeeec
Confidence 58999999999999999999998 77898888753222 223333311 10000 000 0 01111 3599999
Q ss_pred cccccCHHHHHHHHHhhcCCceecCCCceeecCC-eEEEEecCC
Q psy14500 537 EIEKANSDVFNILLQILDDGRLTDNRGRTINFRN-TIIVMTSNL 579 (938)
Q Consensus 537 Eid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~-~iiI~ttn~ 579 (938)
||.++++.+|++||++|++++++.. |.+....+ ..+|+|.|.
T Consensus 70 EiNrappktQsAlLeam~Er~Vt~~-g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 70 EINRAPPKTQSALLEAMEERQVTID-GQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp TGGGS-HHHHHHHHHHHHHSEEEET-TEEEE--SS-EEEEEE-T
T ss_pred ccccCCHHHHHHHHHHHHcCeEEeC-CEEEECCCcEEEEEecCc
Confidence 9999999999999999999988754 44555555 566667774
No 334
>PRK05642 DNA replication initiation factor; Validated
Probab=99.30 E-value=3.5e-11 Score=125.86 Aligned_cols=148 Identities=14% Similarity=0.286 Sum_probs=106.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEcc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 537 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDE 537 (938)
.+++|+||+|||||+|++++++.+...+..++++++.++... ...+.+.+... .+|+||+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~~~--d~LiiDD 105 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------------------GPELLDNLEQY--ELVCLDD 105 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------------------hHHHHHhhhhC--CEEEEec
Confidence 468999999999999999999887655667777777665431 01223334444 4999999
Q ss_pred ccccC--HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcC
Q psy14500 538 IEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI 615 (938)
Q Consensus 538 id~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~ 615 (938)
++... +..+..|+.+++. ....+..+|+|++.++..+. .+.|++.+|+
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~----------~~~~g~~ilits~~~p~~l~--------------------~~~~~L~SRl 155 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNR----------LRDSGRRLLLAASKSPRELP--------------------IKLPDLKSRL 155 (234)
T ss_pred hhhhcCChHHHHHHHHHHHH----------HHhcCCEEEEeCCCCHHHcC--------------------ccCccHHHHH
Confidence 99764 4567778888864 11223457888887665442 2468899999
Q ss_pred C--eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhh
Q psy14500 616 D--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 664 (938)
Q Consensus 616 ~--~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 664 (938)
. .++.+.+++.++..+++..... ..+ +.++++++++|++.
T Consensus 156 ~~gl~~~l~~~~~e~~~~il~~ka~-------~~~--~~l~~ev~~~L~~~ 197 (234)
T PRK05642 156 TLALVFQMRGLSDEDKLRALQLRAS-------RRG--LHLTDEVGHFILTR 197 (234)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHh
Confidence 4 4888999999999999764332 224 77999999999983
No 335
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.29 E-value=3.7e-11 Score=124.10 Aligned_cols=168 Identities=14% Similarity=0.260 Sum_probs=109.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhcc--CCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEE
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFN--NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 535 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 535 (938)
.+++++||+|+|||+|.+++++.+.. .+..++++++.+|........- ......+...++ ...+|+|
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~---------~~~~~~~~~~~~--~~DlL~i 103 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALR---------DGEIEEFKDRLR--SADLLII 103 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHH---------TTSHHHHHHHHC--TSSEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHH---------cccchhhhhhhh--cCCEEEE
Confidence 46899999999999999999998743 4678889988887654222100 011112333334 3459999
Q ss_pred ccccccCH--HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh
Q psy14500 536 DEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN 613 (938)
Q Consensus 536 DEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 613 (938)
|+++.+.. ..|..|+.+++.- ...+..+|+|++..+..+. .+.+++.+
T Consensus 104 DDi~~l~~~~~~q~~lf~l~n~~----------~~~~k~li~ts~~~P~~l~--------------------~~~~~L~S 153 (219)
T PF00308_consen 104 DDIQFLAGKQRTQEELFHLFNRL----------IESGKQLILTSDRPPSELS--------------------GLLPDLRS 153 (219)
T ss_dssp ETGGGGTTHHHHHHHHHHHHHHH----------HHTTSEEEEEESS-TTTTT--------------------TS-HHHHH
T ss_pred ecchhhcCchHHHHHHHHHHHHH----------HhhCCeEEEEeCCCCcccc--------------------ccChhhhh
Confidence 99999875 4588888888751 1233457888887766542 37889999
Q ss_pred cCCe--EEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccc
Q psy14500 614 RIDD--IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 614 R~~~--~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
|+.. ++.+.+++.++..+|+.+.. ..++ +.++++++++|++.. . -.++.|.+.
T Consensus 154 Rl~~Gl~~~l~~pd~~~r~~il~~~a-------~~~~--~~l~~~v~~~l~~~~-~--~~~r~L~~~ 208 (219)
T PF00308_consen 154 RLSWGLVVELQPPDDEDRRRILQKKA-------KERG--IELPEEVIEYLARRF-R--RDVRELEGA 208 (219)
T ss_dssp HHHCSEEEEE----HHHHHHHHHHHH-------HHTT----S-HHHHHHHHHHT-T--SSHHHHHHH
T ss_pred hHhhcchhhcCCCCHHHHHHHHHHHH-------HHhC--CCCcHHHHHHHHHhh-c--CCHHHHHHH
Confidence 9955 99999999999999965544 3455 679999999999832 1 235555555
No 336
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.28 E-value=8.3e-11 Score=119.32 Aligned_cols=156 Identities=21% Similarity=0.294 Sum_probs=99.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCC----Cce-EEeccccccch-hhhhhhcCCCCCCccccccchhHHHHHh----
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNE----ESI-IRIDMSEFIEK-HSISRLIGAPPGYIGYEEGGYLTEIVRR---- 527 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~----~~~-~~~~~~~~~~~-~~~~~l~g~~~~~~g~~~~~~l~~~~~~---- 527 (938)
+.+||+||+|+|||++|+.+++.+.... .+. ...+|..+... +.....+....+..+.+..+.+...+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCccc
Confidence 4799999999999999999999985431 010 00001110000 0000000000011222222223333332
Q ss_pred CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhcc
Q psy14500 528 KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYF 607 (938)
Q Consensus 528 ~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 607 (938)
+...|++|||+|++++..++.|+..||+ +..++++|++|+.. ..+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~-----------~~~~~~~il~~~~~------------------------~~l 139 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEE-----------PPPNTLFILITPSP------------------------EKL 139 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEECCh------------------------HhC
Confidence 4467999999999999999999999987 44567788877742 236
Q ss_pred ChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhh
Q psy14500 608 RPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 664 (938)
Q Consensus 608 ~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 664 (938)
.+.+.+|+ .++.|.|++.+++.+++... + +++++++.++..
T Consensus 140 ~~~i~sr~-~~~~~~~~~~~~~~~~l~~~-----------g----i~~~~~~~i~~~ 180 (188)
T TIGR00678 140 LPTIRSRC-QVLPFPPLSEEALLQWLIRQ-----------G----ISEEAAELLLAL 180 (188)
T ss_pred hHHHHhhc-EEeeCCCCCHHHHHHHHHHc-----------C----CCHHHHHHHHHH
Confidence 67899999 59999999999998886543 3 567888888773
No 337
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.28 E-value=4.2e-12 Score=126.06 Aligned_cols=146 Identities=20% Similarity=0.283 Sum_probs=71.7
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCC------------------CeE
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLS------------------KKI 90 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~------------------~~~ 90 (938)
.|.+|+||+.+.+.+.-.... ..|+||+||||||||++|+.+...++.-...+.+.- .++
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pf 78 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPF 78 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---E
T ss_pred ChhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCc
Confidence 488999999999998887665 479999999999999999999987754221111000 111
Q ss_pred EEEe----hhhhhcCcc--ccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCc----
Q psy14500 91 LLLD----IALLLAGTK--YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE---- 160 (938)
Q Consensus 91 ~~~~----~~~l~~~~~--~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~---- 160 (938)
.... ...+..+.. ..|+.. ..++ .|||+||+..+ +..+.+.|++.++++.
T Consensus 79 r~phhs~s~~~liGgg~~~~PGeis----------lAh~--GVLflDE~~ef--------~~~vld~Lr~ple~g~v~i~ 138 (206)
T PF01078_consen 79 RAPHHSASEAALIGGGRPPRPGEIS----------LAHR--GVLFLDELNEF--------DRSVLDALRQPLEDGEVTIS 138 (206)
T ss_dssp EEE-TT--HHHHHEEGGGEEE-CGG----------GGTT--SEEEECETTTS---------HHHHHHHHHHHHHSBEEEE
T ss_pred ccCCCCcCHHHHhCCCcCCCcCHHH----------HhcC--CEEEechhhhc--------CHHHHHHHHHHHHCCeEEEE
Confidence 1111 111221111 011111 1233 39999999988 3578889999998764
Q ss_pred -----------eEEEEecChhHHHHhh------------------hcCHHHHcccce-EEeeCCCH
Q psy14500 161 -----------LHCIGATTLNEYRQYI------------------EKDAAFERRFQK-ILVEEPDI 196 (938)
Q Consensus 161 -----------i~vI~~tn~~~~~~~~------------------~ld~al~~Rf~~-i~~~~p~~ 196 (938)
+.+|+|+|+.++..+. +++.++++||+. +.++..+.
T Consensus 139 R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~ 204 (206)
T PF01078_consen 139 RAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSY 204 (206)
T ss_dssp ETTEEEEEB--EEEEEEE-S----------------------------------------------
T ss_pred ECCceEEEecccEEEEEecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 4789999987765432 345666667664 55555544
No 338
>KOG0372|consensus
Probab=99.27 E-value=7.8e-12 Score=122.36 Aligned_cols=118 Identities=22% Similarity=0.350 Sum_probs=84.8
Q ss_pred cccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhc
Q psy14500 667 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLIN 742 (938)
Q Consensus 667 ~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~ 742 (938)
.|...+|||||.+..+..+++.-+ ..+..+++|+||+||||-.|++++-++..+ ++++..++||||...+.-..+
T Consensus 43 tPvtvcGDIHGQf~Dllelf~igG-~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvYG 121 (303)
T KOG0372|consen 43 TPVTVCGDIHGQFYDLLELFRIGG-DVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVYG 121 (303)
T ss_pred CCcEEeecccchHHHHHHHHHhCC-CCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhhh
Confidence 466778999999777777775444 578889999999999999999999887776 567899999999877654333
Q ss_pred c----ccCCccccHHHhhCCCCHHHHHHHHhcCCce-EEeCCEEEEecccCcCCCH
Q psy14500 743 I----NKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYYKKYLMIHAGVAKQWTA 793 (938)
Q Consensus 743 ~----~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~-~~~~~~~~vHAg~~p~~~~ 793 (938)
. ..+-+.... | ...-+-+.-||+. +..+++++||||++|+...
T Consensus 122 FY~EclrKYG~~~v--W------r~c~eiFdyL~l~aiid~kifCVHGGlSP~i~~ 169 (303)
T KOG0372|consen 122 FYDECLRKYGSANV--W------RYCTEIFDYLSLAAIIDGKIFCVHGGLSPSIQT 169 (303)
T ss_pred HHHHHHHHcCChHH--H------HHHHHHHHhhhHhheecCcEEEEcCCCCcchhh
Confidence 1 111111111 1 2223445556665 5678999999999998763
No 339
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.27 E-value=3.8e-11 Score=146.86 Aligned_cols=181 Identities=18% Similarity=0.275 Sum_probs=122.7
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC-------CceEEeccccccch
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE-------ESIIRIDMSEFIEK 499 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~-------~~~~~~~~~~~~~~ 499 (938)
+.++||++.++.+...+.+... .+++|+||||||||++|+.+|+.+.... ..++.++++.+..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~---------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ---------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc---------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-
Confidence 5789999999999888865432 3789999999999999999999874322 3355555554331
Q ss_pred hhhhhhcCCCCCCcccccc--chhHHHHH-hCCCEEEEEccccccCH--------HHHHHHHHhhcCCceecCCCceeec
Q psy14500 500 HSISRLIGAPPGYIGYEEG--GYLTEIVR-RKPYSLILLDEIEKANS--------DVFNILLQILDDGRLTDNRGRTINF 568 (938)
Q Consensus 500 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~-~~~~~vl~lDEid~~~~--------~~~~~Ll~~le~g~~~~~~g~~~~~ 568 (938)
...|.|.-+. +.+...+. ...+.|||||||+.+.. ++-+.|++.|+.|.+
T Consensus 257 ---------g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l---------- 317 (852)
T TIGR03345 257 ---------GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGEL---------- 317 (852)
T ss_pred ---------ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCe----------
Confidence 1124443222 22223332 23568999999998752 345678899887643
Q ss_pred CCeEEEEecCCCch-hhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHcc
Q psy14500 569 RNTIIVMTSNLGSD-KIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 647 (938)
Q Consensus 569 ~~~iiI~ttn~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~ 647 (938)
.+|.||+.... .. -..+++|.+||+ +|.+++++.++..+|++.....+...
T Consensus 318 ---~~IgaTT~~e~~~~--------------------~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~---- 369 (852)
T TIGR03345 318 ---RTIAATTWAEYKKY--------------------FEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKH---- 369 (852)
T ss_pred ---EEEEecCHHHHhhh--------------------hhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhc----
Confidence 47888874211 11 124789999995 89999999999999975444333321
Q ss_pred CCeEEEcHHHHHHHHhhc
Q psy14500 648 NMDLKISKAALKKISNIG 665 (938)
Q Consensus 648 ~~~l~~~~~~~~~L~~~~ 665 (938)
..+.++++++..++..+
T Consensus 370 -~~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 370 -HGVLILDEAVVAAVELS 386 (852)
T ss_pred -CCCeeCHHHHHHHHHHc
Confidence 23788999999888744
No 340
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.26 E-value=7.7e-11 Score=136.60 Aligned_cols=216 Identities=14% Similarity=0.153 Sum_probs=144.3
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-------CCCceEEeccccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIE 498 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~ 498 (938)
-+.+.|.+.-++.|...+.....+ ..|...++++|+||||||++++.+.+.+-. ....++.+||..+..
T Consensus 754 PD~LPhREeEIeeLasfL~paIkg----sgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lst 829 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQ----SGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVH 829 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhc----CCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCC
Confidence 467889999999999999866543 122224579999999999999999877621 124678999977665
Q ss_pred hhhh-----hhhcCCCCCCccccccchhHHHHHh-----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeec
Q psy14500 499 KHSI-----SRLIGAPPGYIGYEEGGYLTEIVRR-----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINF 568 (938)
Q Consensus 499 ~~~~-----~~l~g~~~~~~g~~~~~~l~~~~~~-----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~ 568 (938)
...+ ..++|..+ ..|......+...+.. ....||+|||||.+....++.|+.+++.-.. ..
T Consensus 830 p~sIYqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~--------s~ 900 (1164)
T PTZ00112 830 PNAAYQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK--------IN 900 (1164)
T ss_pred HHHHHHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc--------cC
Confidence 5433 23334432 2222211222222221 2246999999999988778889888874111 12
Q ss_pred CCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCHHHHHHHHHHHHHHHHHHHHcc
Q psy14500 569 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQLNILKNKLLKM 647 (938)
Q Consensus 569 ~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~ 647 (938)
..+++|+++|.-. +...+.|.+.+|+.. .+.|+|++.+++.+|+...+...
T Consensus 901 SKLiLIGISNdlD---------------------LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A------- 952 (1164)
T PTZ00112 901 SKLVLIAISNTMD---------------------LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC------- 952 (1164)
T ss_pred CeEEEEEecCchh---------------------cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC-------
Confidence 3567888888411 112345677788753 58999999999999987766542
Q ss_pred CCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHH
Q psy14500 648 NMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLK 687 (938)
Q Consensus 648 ~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~ 687 (938)
.-.+++++++++++.... .-||++..++.|.++.+
T Consensus 953 --~gVLdDdAIELIArkVAq---~SGDARKALDILRrAgE 987 (1164)
T PTZ00112 953 --KEIIDHTAIQLCARKVAN---VSGDIRKALQICRKAFE 987 (1164)
T ss_pred --CCCCCHHHHHHHHHhhhh---cCCHHHHHHHHHHHHHh
Confidence 135899999999984432 23888888888887774
No 341
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.26 E-value=7.6e-11 Score=115.73 Aligned_cols=143 Identities=17% Similarity=0.183 Sum_probs=96.7
Q ss_pred ccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC-------------cCCCeEEEEehhhhhc
Q psy14500 35 GRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS-------------LLSKKILLLDIALLLA 100 (938)
Q Consensus 35 G~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~-------------~~~~~~~~~~~~~l~~ 100 (938)
||+.+++.|...+.....+| +||+||+|+||+++|.++|+.+.+...... .....++.++.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~- 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK- 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-
Confidence 78999999999999888888 599999999999999999999866432210 112344444432210
Q ss_pred CccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--ceEEEEecChhHHHHh
Q psy14500 101 GTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQY 175 (938)
Q Consensus 101 ~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~i~vI~~tn~~~~~~~ 175 (938)
+.. ....++.+...+.. ..+..|++|||+|.| +.+++|+|+..||.. .+++|.+|+...
T Consensus 80 --~~i--~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l--------~~~a~NaLLK~LEepp~~~~fiL~t~~~~---- 143 (162)
T PF13177_consen 80 --KSI--KIDQIREIIEFLSLSPSEGKYKVIIIDEADKL--------TEEAQNALLKTLEEPPENTYFILITNNPS---- 143 (162)
T ss_dssp --SSB--SHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------HHHHHHHHHHHHSTTTTEEEEEEES-GG----
T ss_pred --chh--hHHHHHHHHHHHHHHHhcCCceEEEeehHhhh--------hHHHHHHHHHHhcCCCCCEEEEEEECChH----
Confidence 000 11245566555441 234679999999999 357899999999864 788999998887
Q ss_pred hhcCHHHHcccceEEeeCCC
Q psy14500 176 IEKDAAFERRFQKILVEEPD 195 (938)
Q Consensus 176 ~~ld~al~~Rf~~i~~~~p~ 195 (938)
.+.++++|||..+.|++++
T Consensus 144 -~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 -KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GS-HHHHTTSEEEEE----
T ss_pred -HChHHHHhhceEEecCCCC
Confidence 8999999999999998764
No 342
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.26 E-value=4.1e-11 Score=129.55 Aligned_cols=162 Identities=14% Similarity=0.215 Sum_probs=110.0
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEecccc---ccch-hhhh
Q psy14500 430 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSE---FIEK-HSIS 503 (938)
Q Consensus 430 iGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~---~~~~-~~~~ 503 (938)
-++....+.+..++...+. .+.+||+||+|+||+++|+++|+.+...... -.+-.|.. +... |..-
T Consensus 5 PW~~~~~~~l~~~~~~~rl--------~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (325)
T PRK06871 5 PWLQPTYQQITQAFQQGLG--------HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDF 76 (325)
T ss_pred cchHHHHHHHHHHHHcCCc--------ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 4666777888888875543 2479999999999999999999998543211 01111111 1000 0000
Q ss_pred hhcCC-CCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecC
Q psy14500 504 RLIGA-PPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 578 (938)
Q Consensus 504 ~l~g~-~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 578 (938)
..+.. ....+|.+..+.+...+. .+++.|++||++|+|+..++|+||+.||+ +..+++||++|+
T Consensus 77 ~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-----------Pp~~~~fiL~t~ 145 (325)
T PRK06871 77 HILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-----------PRPNTYFLLQAD 145 (325)
T ss_pred EEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEEC
Confidence 00111 011234444455544443 34468999999999999999999999998 788899999888
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHH
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI 635 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~ 635 (938)
... .+.|.++||| ..+.|.|++.+++.+.+..
T Consensus 146 ~~~------------------------~llpTI~SRC-~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 146 LSA------------------------ALLPTIYSRC-QTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred ChH------------------------hCchHHHhhc-eEEeCCCCCHHHHHHHHHH
Confidence 633 3678999999 5999999999988877543
No 343
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=3.3e-11 Score=137.36 Aligned_cols=160 Identities=25% Similarity=0.365 Sum_probs=114.3
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCC----CCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSD----AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS 501 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~----~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~ 501 (938)
+.++.|.+++++.+.+.+.-.+...+. .+-|. .+||+||||||||.+|+++|... +.||..+..++|...
T Consensus 149 F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPk-GvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVem-- 222 (596)
T COG0465 149 FADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPK-GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM-- 222 (596)
T ss_pred hhhhcCcHHHHHHHHHHHHHHhCchhhHhccccccc-ceeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhhh--
Confidence 355678888888888877544421110 01222 59999999999999999999887 899999999998764
Q ss_pred hhhhcCCCCCCccc--cccchhHHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCCce
Q psy14500 502 ISRLIGAPPGYIGY--EEGGYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRT 565 (938)
Q Consensus 502 ~~~l~g~~~~~~g~--~~~~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~ 565 (938)
|+|. ...+.++...++..+||+||||||.... ...|.||..||...
T Consensus 223 ----------fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~-------- 284 (596)
T COG0465 223 ----------FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG-------- 284 (596)
T ss_pred ----------hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC--------
Confidence 3333 3345566666666679999999997653 46788888887411
Q ss_pred eecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHH
Q psy14500 566 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIAN 634 (938)
Q Consensus 566 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~ 634 (938)
....+++|++||.+. .++|+|+ +|||..|..+.++-....+|++
T Consensus 285 -~~~gviviaaTNRpd------------------------VlD~ALlRpgRFDRqI~V~~PDi~gRe~Ilk 330 (596)
T COG0465 285 -GNEGVIVIAATNRPD------------------------VLDPALLRPGRFDRQILVELPDIKGREQILK 330 (596)
T ss_pred -CCCceEEEecCCCcc------------------------cchHhhcCCCCcceeeecCCcchhhHHHHHH
Confidence 224578888999643 2345555 6999999999998877777766
No 344
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.25 E-value=3.6e-11 Score=129.80 Aligned_cols=162 Identities=17% Similarity=0.204 Sum_probs=109.1
Q ss_pred cccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc--cc--hhhhh
Q psy14500 428 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF--IE--KHSIS 503 (938)
Q Consensus 428 ~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~--~~--~~~~~ 503 (938)
..-+|..+.+.+...+...+.. +.+||+||+|+||+++|.++|+.+...+.. ..-+|... .. .|...
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl~--------HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~-~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRLG--------HGLLICGPEGLGKRAVALALAEHVLASGPD-PAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCcc--------eeEeeECCCCCCHHHHHHHHHHHHhCCCCC-CCCcchHHHHHhcCCCCCE
Confidence 3457888888888888755532 469999999999999999999988643211 00011110 00 01111
Q ss_pred hhcCCCCCC--------ccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCe
Q psy14500 504 RLIGAPPGY--------IGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 571 (938)
Q Consensus 504 ~l~g~~~~~--------~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 571 (938)
..+...+.. ++.+..+.+...+.. +.+.|++||++|+|+...+|+||+.||+ +..++
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~~ 144 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-----------PSPGR 144 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-----------CCCCC
Confidence 111101111 222233444444433 3358999999999999999999999998 77888
Q ss_pred EEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH
Q psy14500 572 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 634 (938)
Q Consensus 572 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~ 634 (938)
+||++|+... .+.|.+.||| ..+.|.+++.+++...+.
T Consensus 145 ~fiL~~~~~~------------------------~lLpTIrSRC-q~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 145 YLWLISAQPA------------------------RLPATIRSRC-QRLEFKLPPAHEALAWLL 182 (319)
T ss_pred eEEEEECChh------------------------hCchHHHhhh-eEeeCCCcCHHHHHHHHH
Confidence 8998888633 3678999999 599999999988877743
No 345
>KOG0737|consensus
Probab=99.25 E-value=3.1e-11 Score=127.01 Aligned_cols=138 Identities=19% Similarity=0.316 Sum_probs=99.2
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEE
Q psy14500 456 PYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLI 533 (938)
Q Consensus 456 ~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl 533 (938)
|...+||+||||||||.+|+++|+.. +.+|+.+.++.++++ .| |+.+. +.++.....-.++|+
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt~K-----Wf-------gE~eKlv~AvFslAsKl~P~iI 190 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLTSK-----WF-------GEAQKLVKAVFSLASKLQPSII 190 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccchh-----hH-------HHHHHHHHHHHhhhhhcCccee
Confidence 44479999999999999999999998 889999999998874 22 22222 334444456667999
Q ss_pred EEccccccC-------HH----HHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHH
Q psy14500 534 LLDEIEKAN-------SD----VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNE 602 (938)
Q Consensus 534 ~lDEid~~~-------~~----~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~ 602 (938)
||||||.+- .+ .-+.+....| |-.+. +...++++.+||.+.+
T Consensus 191 FIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD-Gl~s~------~~~rVlVlgATNRP~D-------------------- 243 (386)
T KOG0737|consen 191 FIDEVDSFLGQRRSTDHEATAMMKNEFMALWD-GLSSK------DSERVLVLGATNRPFD-------------------- 243 (386)
T ss_pred ehhhHHHHHhhcccchHHHHHHHHHHHHHHhc-cccCC------CCceEEEEeCCCCCcc--------------------
Confidence 999999764 11 2344444444 22221 1234778889998776
Q ss_pred HhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 603 VKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 603 l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
++..+++|+...+.+.-++.+...+|+.-.+..
T Consensus 244 ----lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 244 ----LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKK 276 (386)
T ss_pred ----HHHHHHHhCcceeeeCCCchhhHHHHHHHHhcc
Confidence 457789999999999999999999997665543
No 346
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.25 E-value=3.7e-10 Score=123.88 Aligned_cols=196 Identities=15% Similarity=0.270 Sum_probs=124.5
Q ss_pred CCCCccccH--HHHHHHHHHHhcC---CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14500 29 KLDPVIGRD--DEIRRAIQVLQRR---SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 103 (938)
Q Consensus 29 ~~~~lvG~~--~~~~~l~~~l~~~---~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~ 103 (938)
+|+.+|..+ .....+...+... .-+.++|+||+|+|||+|++|+++...... | +..++.+....... .
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~-~----~a~v~y~~se~f~~--~ 157 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG-P----NARVVYLTSEDFTN--D 157 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhC-C----CceEEeccHHHHHH--H
Confidence 677775533 2223333333322 356789999999999999999999875532 1 44566555543321 1
Q ss_pred ccch----HHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcC
Q psy14500 104 YRGE----FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKD 179 (938)
Q Consensus 104 ~~g~----~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld 179 (938)
++.. ....++..+ . .+ +|+||+++.+.+.... ..+....+..+.+.++.+++.+...|. ..-.+.
T Consensus 158 ~v~a~~~~~~~~Fk~~y-~---~d---lllIDDiq~l~gk~~~--qeefFh~FN~l~~~~kqIvltsdr~P~--~l~~~~ 226 (408)
T COG0593 158 FVKALRDNEMEKFKEKY-S---LD---LLLIDDIQFLAGKERT--QEEFFHTFNALLENGKQIVLTSDRPPK--ELNGLE 226 (408)
T ss_pred HHHHHHhhhHHHHHHhh-c---cC---eeeechHhHhcCChhH--HHHHHHHHHHHHhcCCEEEEEcCCCch--hhcccc
Confidence 1101 111222222 1 22 8999999998654311 234566777777777744444444333 133467
Q ss_pred HHHHcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHH
Q psy14500 180 AAFERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 180 ~al~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 252 (938)
+.|.+||. .+.+.+|+.+.+..||+...+. .++.++++++..++....+.+ +.....++....
T Consensus 227 ~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~----~~~~i~~ev~~~la~~~~~nv------ReLegaL~~l~~ 292 (408)
T COG0593 227 DRLRSRLEWGLVVEIEPPDDETRLAILRKKAED----RGIEIPDEVLEFLAKRLDRNV------RELEGALNRLDA 292 (408)
T ss_pred HHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHhhccH------HHHHHHHHHHHH
Confidence 99999997 3889999999999999985554 689999999999998877666 544444444433
No 347
>KOG0374|consensus
Probab=99.24 E-value=1.5e-11 Score=132.10 Aligned_cols=119 Identities=24% Similarity=0.397 Sum_probs=92.4
Q ss_pred ccccccccccchHHHHHHHHHhc-ccCCccccccccccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhc
Q psy14500 668 LIYGARDVHGCKKSLSILLKKIH-KKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLIN 742 (938)
Q Consensus 668 ~~~~~~dl~~~~~~l~~~l~~~~-~~~~~~~li~~GD~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~ 742 (938)
|...+||+||.+..+.++++..+ + ++...++|+|||+|||+.+++++-++..+ +.+++.++||||.+-++...+
T Consensus 60 PV~i~GDiHGq~~DLlrlf~~~g~~-pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yG 138 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGDLLRLFDLLGSF-PPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYG 138 (331)
T ss_pred CEEEEccCcCCHHHHHHHHHhcCCC-CCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceee
Confidence 66778999999999999999999 6 58899999999999999999999999887 557999999999987774433
Q ss_pred cccCCccccHHHhhC-CCCHHHHHHHHhcCCceEE-eCCEEEEecccCcCCC
Q psy14500 743 INKKSKLDTFDDILD-APDKKKLVSWLRTQPLAIY-YKKYLMIHAGVAKQWT 792 (938)
Q Consensus 743 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~lp~~~~-~~~~~~vHAg~~p~~~ 792 (938)
.. +....... ......+.+-+..||+.-. .++++++|||++|.+.
T Consensus 139 Fy-----dE~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGlsp~l~ 185 (331)
T KOG0374|consen 139 FY-----DECKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGLSPHLK 185 (331)
T ss_pred eH-----HHHHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCCChhhc
Confidence 11 11111111 1223556677889999854 5689999999999754
No 348
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=9.5e-11 Score=133.21 Aligned_cols=174 Identities=17% Similarity=0.302 Sum_probs=117.3
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEc
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 536 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 536 (938)
..+++|+||||+|||+|++++++.+...+..++++....+...... .+ .. + ....+....+ ...+|+||
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~-~l-~~-----~--~~~~f~~~~~--~~dvLiID 209 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVS-AI-RS-----G--EMQRFRQFYR--NVDALFIE 209 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHH-HH-hc-----c--hHHHHHHHcc--cCCEEEEc
Confidence 3479999999999999999999998666678888887666542111 01 10 0 0111222222 34699999
Q ss_pred cccccCH--HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhc
Q psy14500 537 EIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINR 614 (938)
Q Consensus 537 Eid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R 614 (938)
|++.+.. ..+..|+.+++.- ...+..+|+||+..+..+. .+.+.+.+|
T Consensus 210 Diq~l~~k~~~qeelf~l~N~l----------~~~~k~IIlts~~~p~~l~--------------------~l~~rL~SR 259 (445)
T PRK12422 210 DIEVFSGKGATQEEFFHTFNSL----------HTEGKLIVISSTCAPQDLK--------------------AMEERLISR 259 (445)
T ss_pred chhhhcCChhhHHHHHHHHHHH----------HHCCCcEEEecCCCHHHHh--------------------hhHHHHHhh
Confidence 9998853 5677777776531 0122357888887665432 367889999
Q ss_pred CC--eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 615 ID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 615 ~~--~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
|. .++.+.|++.+++.+|+.+.+.. .+ +.++++++++|+... ..++|.+.|+ |.++.
T Consensus 260 ~~~Gl~~~l~~pd~e~r~~iL~~k~~~-------~~--~~l~~evl~~la~~~---~~dir~L~g~---l~~l~ 318 (445)
T PRK12422 260 FEWGIAIPLHPLTKEGLRSFLERKAEA-------LS--IRIEETALDFLIEAL---SSNVKSLLHA---LTLLA 318 (445)
T ss_pred hcCCeEEecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhc---CCCHHHHHHH---HHHHH
Confidence 95 59999999999999997665533 34 779999999998832 1346666666 55553
No 349
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.23 E-value=3.9e-11 Score=136.79 Aligned_cols=173 Identities=17% Similarity=0.264 Sum_probs=115.7
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEE
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLIL 534 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~ 534 (938)
..+++|+||||+|||+|++++++.+... +..++++++.++....... + .. .....+...++. ..+|+
T Consensus 136 ~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~-~-~~-------~~~~~~~~~~~~--~dlLi 204 (405)
T TIGR00362 136 YNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNA-L-RN-------NKMEEFKEKYRS--VDLLL 204 (405)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHH-H-Hc-------CCHHHHHHHHHh--CCEEE
Confidence 3478999999999999999999988543 5678888877665431111 1 00 011223333433 35999
Q ss_pred EccccccCH--HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh
Q psy14500 535 LDEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI 612 (938)
Q Consensus 535 lDEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 612 (938)
|||++.+.. ..+..|+..++.- ...+..+|+|+|..+..+. .+.+.+.
T Consensus 205 iDDi~~l~~~~~~~~~l~~~~n~~----------~~~~~~iiits~~~p~~l~--------------------~l~~~l~ 254 (405)
T TIGR00362 205 IDDIQFLAGKERTQEEFFHTFNAL----------HENGKQIVLTSDRPPKELP--------------------GLEERLR 254 (405)
T ss_pred EehhhhhcCCHHHHHHHHHHHHHH----------HHCCCCEEEecCCCHHHHh--------------------hhhhhhh
Confidence 999998753 4677787777631 1122346788887665432 2567888
Q ss_pred hcCCe--EEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHH
Q psy14500 613 NRIDD--IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSL 682 (938)
Q Consensus 613 ~R~~~--~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l 682 (938)
+|+.. ++.|.+++.+++..|+...+.. .+ +.++++++++|+... ...+|++.|.+..+
T Consensus 255 SRl~~g~~v~i~~pd~~~r~~il~~~~~~-------~~--~~l~~e~l~~ia~~~---~~~~r~l~~~l~~l 314 (405)
T TIGR00362 255 SRFEWGLVVDIEPPDLETRLAILQKKAEE-------EG--LELPDEVLEFIAKNI---RSNVRELEGALNRL 314 (405)
T ss_pred hhccCCeEEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhc---CCCHHHHHHHHHHH
Confidence 99964 8999999999999997665543 33 778999999999732 23467777773333
No 350
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=8.4e-11 Score=128.32 Aligned_cols=143 Identities=17% Similarity=0.234 Sum_probs=96.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEecccc---ccch-hhhhhhcCC-C-CCCccccccchhHHHHHh-
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSE---FIEK-HSISRLIGA-P-PGYIGYEEGGYLTEIVRR- 527 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~---~~~~-~~~~~l~g~-~-~~~~g~~~~~~l~~~~~~- 527 (938)
.+.+||+||+|+|||++|+++|+.++..... -.+-.|.. +... |.....+-. . ...++.+..+.+.+.+..
T Consensus 22 ~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~ 101 (328)
T PRK05707 22 PHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQT 101 (328)
T ss_pred ceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhc
Confidence 3479999999999999999999999543210 01111111 1000 000000100 0 012333444555555533
Q ss_pred ---CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHh
Q psy14500 528 ---KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVK 604 (938)
Q Consensus 528 ---~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~ 604 (938)
+++.|++||++|+|+.+.+|+||+.||+ +..+++||++|+...
T Consensus 102 ~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-----------Pp~~~~fiL~t~~~~----------------------- 147 (328)
T PRK05707 102 AQLGGRKVVLIEPAEAMNRNAANALLKSLEE-----------PSGDTVLLLISHQPS----------------------- 147 (328)
T ss_pred cccCCCeEEEECChhhCCHHHHHHHHHHHhC-----------CCCCeEEEEEECChh-----------------------
Confidence 4478999999999999999999999998 667889999998643
Q ss_pred hccChHHhhcCCeEEEccCCCHHHHHHHHHH
Q psy14500 605 IYFRPEFINRIDDIIVFRYLNRKNILSIANI 635 (938)
Q Consensus 605 ~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~ 635 (938)
.+.|.++|||. .+.|.|++.+++.+.+..
T Consensus 148 -~ll~TI~SRc~-~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 148 -RLLPTIKSRCQ-QQACPLPSNEESLQWLQQ 176 (328)
T ss_pred -hCcHHHHhhce-eeeCCCcCHHHHHHHHHH
Confidence 36789999995 899999999988877543
No 351
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.22 E-value=2.3e-10 Score=135.08 Aligned_cols=116 Identities=17% Similarity=0.181 Sum_probs=81.8
Q ss_pred HHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCc------e----eecCCeEEEEecCCCchhhhhhhcchH
Q psy14500 523 EIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGR------T----INFRNTIIVMTSNLGSDKIKEMEKGDK 592 (938)
Q Consensus 523 ~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~------~----~~~~~~iiI~ttn~~~~~~~~~~~~~~ 592 (938)
+.+.++.+|+|||||++.+++..|..|+++|+++.+...++. . .-..++.+|+++|..
T Consensus 211 G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~------------ 278 (608)
T TIGR00764 211 GAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD------------ 278 (608)
T ss_pred CceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH------------
Confidence 345567789999999999999999999999999988764421 1 113467889999842
Q ss_pred HHHHHHHHHHHhhccChHHhhcCC---eEEEccCC---CHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhh
Q psy14500 593 EIIKLAVMNEVKIYFRPEFINRID---DIIVFRYL---NRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 664 (938)
Q Consensus 593 ~~~~~~~~~~l~~~~~~~l~~R~~---~~i~f~~l---~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 664 (938)
....++|+|++||+ ..+.|++. +.+...+++. .+.+.+++.|....++++++..|.+.
T Consensus 279 ----------~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~----~i~~~~~r~G~l~~~s~~Av~~Li~~ 342 (608)
T TIGR00764 279 ----------DLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ----FVAQEVKKDGRIPHFTRDAVEEIVRE 342 (608)
T ss_pred ----------HHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH----HHHHHHHHhCCCCcCCHHHHHHHHHH
Confidence 12358999999998 55666543 4555555533 33444445444457999999999874
No 352
>KOG0744|consensus
Probab=99.22 E-value=2.2e-11 Score=124.78 Aligned_cols=144 Identities=26% Similarity=0.377 Sum_probs=97.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc-c-----CCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCC-CE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIF-N-----NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKP-YS 531 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~-~-----~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~-~~ 531 (938)
-+|++||||||||+|.+++|+.+. + ....++.+++..+. +..|+.+-..+.. --..+.+.+.... .-
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-----SKWFsESgKlV~k-mF~kI~ELv~d~~~lV 252 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-----SKWFSESGKLVAK-MFQKIQELVEDRGNLV 252 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-----HHHHhhhhhHHHH-HHHHHHHHHhCCCcEE
Confidence 489999999999999999999882 1 12344455544433 2333321110000 0012223333322 23
Q ss_pred EEEEccccccCH---------------HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHH
Q psy14500 532 LILLDEIEKANS---------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIK 596 (938)
Q Consensus 532 vl~lDEid~~~~---------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~ 596 (938)
.|+|||+|.+.. .+.|+||+-||.- -...|+++++|||.
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl---------K~~~NvliL~TSNl----------------- 306 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL---------KRYPNVLILATSNL----------------- 306 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh---------ccCCCEEEEeccch-----------------
Confidence 578999987642 5789999999852 25678899999995
Q ss_pred HHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHH
Q psy14500 597 LAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILK 641 (938)
Q Consensus 597 ~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~ 641 (938)
...++-+|++|-|.+...-|++.+.+.+|+...+..+.
T Consensus 307 -------~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 307 -------TDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred -------HHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 34577889999999999999999999999888776654
No 353
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.22 E-value=8.2e-11 Score=120.58 Aligned_cols=170 Identities=25% Similarity=0.341 Sum_probs=114.2
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccch-HHHHHHHHHHHHH---hcCCC
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGE-FEDRLKKILKEIS---NNQKD 125 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~l~~~~~~a~---~~~~~ 125 (938)
-.++||||+||+|||||.||+.||+.+ +.++-..|+..+.. ..|+|+ .++-+..+++.+. .....
T Consensus 95 L~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTE-AGYVGEDVENillkLlqaadydV~rAer 163 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTE-AGYVGEDVENILLKLLQAADYDVERAER 163 (408)
T ss_pred eeeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhh-ccccchhHHHHHHHHHHHcccCHHHHhC
Confidence 345899999999999999999999999 77777777776664 457775 6667777777654 11234
Q ss_pred eEEEEeCccccccCCCCCC------ccchhhhhhhhccC-----------------------CceEEEEecChhHHH---
Q psy14500 126 IIIFIDELHTMIGTGKVEG------SIDAGNMLKPELSR-----------------------GELHCIGATTLNEYR--- 173 (938)
Q Consensus 126 ~iL~iDEid~l~~~~~~~~------~~~~~~~L~~~l~~-----------------------~~i~vI~~tn~~~~~--- 173 (938)
.|++|||||.+........ ...++.+|+.++|. .+|.||+..-.....
T Consensus 164 GIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI 243 (408)
T COG1219 164 GIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKII 243 (408)
T ss_pred CeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHH
Confidence 4999999999987543211 12367778887742 123343322111000
Q ss_pred ------------------------------------HhhhcCHHHHcccce-EEeeCCCHHHHHHHHH----hhhhhhhc
Q psy14500 174 ------------------------------------QYIEKDAAFERRFQK-ILVEEPDIEETISILR----GLQKKYEV 212 (938)
Q Consensus 174 ------------------------------------~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~----~~~~~~~~ 212 (938)
-.+.+-|.|.-|++. ..+..++.++...||. .+.++|..
T Consensus 244 ~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~ 323 (408)
T COG1219 244 KKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQK 323 (408)
T ss_pred HHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHH
Confidence 013456888889987 6699999999999983 44444433
Q ss_pred ---ccC--CCCCHHHHHHHHHhh
Q psy14500 213 ---HHG--VEITDPAIVAASELS 230 (938)
Q Consensus 213 ---~~~--~~i~~~~l~~~~~~s 230 (938)
..+ +.++++|+.++++.+
T Consensus 324 Lf~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 324 LFEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred HhcccCceEEEcHHHHHHHHHHH
Confidence 222 567889888888765
No 354
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.21 E-value=1.2e-10 Score=133.04 Aligned_cols=178 Identities=18% Similarity=0.262 Sum_probs=119.1
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHHhc--cCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHH-hCCCEE
Q psy14500 456 PYGSFMFLGPTGVGKTELCKTLSACIF--NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-RKPYSL 532 (938)
Q Consensus 456 ~~~~iLl~GppGtGKT~lA~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-~~~~~v 532 (938)
+..+++|+|++|+|||+|++++++.+. ..+..++++.+.++....... ++.. .+.+..+.. .....+
T Consensus 140 ~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~--l~~~--------~~~~~~~~~~~~~~dv 209 (450)
T PRK14087 140 SYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI--LQKT--------HKEIEQFKNEICQNDV 209 (450)
T ss_pred ccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH--HHHh--------hhHHHHHHHHhccCCE
Confidence 344799999999999999999999774 345677788877765432111 1100 011222211 123459
Q ss_pred EEEccccccC--HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChH
Q psy14500 533 ILLDEIEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPE 610 (938)
Q Consensus 533 l~lDEid~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 610 (938)
|+|||++.+. +..++.|+.+++.- ...+..+|+|+|..+..+ ..+.+.
T Consensus 210 LiIDDiq~l~~k~~~~e~lf~l~N~~----------~~~~k~iIltsd~~P~~l--------------------~~l~~r 259 (450)
T PRK14087 210 LIIDDVQFLSYKEKTNEIFFTIFNNF----------IENDKQLFFSSDKSPELL--------------------NGFDNR 259 (450)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHH----------HHcCCcEEEECCCCHHHH--------------------hhccHH
Confidence 9999999876 66788888888741 112235788999766543 246788
Q ss_pred HhhcCC--eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 611 FINRID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 611 l~~R~~--~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+.+||. .++.+.||+.+++.+|+.+.+.. .+..+.++++++++|+...- ..+|.+.+. +.+++
T Consensus 260 L~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~-------~gl~~~l~~evl~~Ia~~~~---gd~R~L~ga---L~~l~ 324 (450)
T PRK14087 260 LITRFNMGLSIAIQKLDNKTATAIIKKEIKN-------QNIKQEVTEEAINFISNYYS---DDVRKIKGS---VSRLN 324 (450)
T ss_pred HHHHHhCCceeccCCcCHHHHHHHHHHHHHh-------cCCCCCCCHHHHHHHHHccC---CCHHHHHHH---HHHHH
Confidence 899995 39999999999999997776643 34334799999999998431 234444444 66555
No 355
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.21 E-value=1.9e-10 Score=141.79 Aligned_cols=182 Identities=19% Similarity=0.249 Sum_probs=124.0
Q ss_pred CCccccHHHHHHHHHHHhc-------CC--CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-
Q psy14500 31 DPVIGRDDEIRRAIQVLQR-------RS--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA- 100 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~~-------~~--~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~- 100 (938)
+.++||+.+++.+...+.+ +. ..++||+||+|||||++|++||+.+... ...++.++++....
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-------~~~~~~~d~s~~~~~ 581 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-------EDAMIRLDMSEYMEK 581 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-------ccceEEEEchhcccc
Confidence 4789999999999887752 11 2347999999999999999999988443 23566666654321
Q ss_pred ---------CccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC------------
Q psy14500 101 ---------GTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 159 (938)
Q Consensus 101 ---------~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------ 159 (938)
...|+|-.+ ...+...++ ..+.+|++|||+|.+. .++.+.|+++++.|
T Consensus 582 ~~~~~l~g~~~gyvg~~~--~~~l~~~~~-~~p~~VvllDeieka~--------~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 582 HTVSKLIGSPPGYVGYNE--GGQLTEAVR-KKPYTVVLFDEIEKAH--------PDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred ccHHHhcCCCCcccCcCc--cchHHHHHH-hCCCeEEEECChhhCC--------HHHHHHHHHHhccCceecCCCcEEec
Confidence 112333211 112233333 3445899999999984 46888999999764
Q ss_pred -ceEEEEecChhHH-----------------------HH---------hhhcCHHHHcccc-eEEeeCCCHHHHHHHHHh
Q psy14500 160 -ELHCIGATTLNEY-----------------------RQ---------YIEKDAAFERRFQ-KILVEEPDIEETISILRG 205 (938)
Q Consensus 160 -~i~vI~~tn~~~~-----------------------~~---------~~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~ 205 (938)
+.++|+|||...- .. .-...|.|++|++ +|.|.+++.++...|++.
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 4568888884210 00 0014578999996 599999999999999876
Q ss_pred hhhhhh---cc--cCCCCCHHHHHHHHHhh
Q psy14500 206 LQKKYE---VH--HGVEITDPAIVAASELS 230 (938)
Q Consensus 206 ~~~~~~---~~--~~~~i~~~~l~~~~~~s 230 (938)
.+..+. .. ..+.+++++++.++...
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~~ 760 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEEG 760 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHhc
Confidence 665432 12 23678999999988863
No 356
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.21 E-value=3.4e-10 Score=125.23 Aligned_cols=154 Identities=24% Similarity=0.313 Sum_probs=109.1
Q ss_pred CCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHH
Q psy14500 31 DPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFED 110 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 110 (938)
..++|+++++..++..+... .++||.||||||||++|+.+|+.+ +.+++.+.+......+...|...-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhH
Confidence 34899999999888776655 899999999999999999999999 778888888655444444443321
Q ss_pred HHHHH-HHHHHhcCCC------eEEEEeCccccccCCCCCCccchhhhhhhhccC--------------CceEEEEecCh
Q psy14500 111 RLKKI-LKEISNNQKD------IIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--------------GELHCIGATTL 169 (938)
Q Consensus 111 ~l~~~-~~~a~~~~~~------~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--------------~~i~vI~~tn~ 169 (938)
..... .....-..+| +|+++|||++.. ..+++.|++.|+. ..+.+|+|+|+
T Consensus 92 ~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~--------p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np 163 (329)
T COG0714 92 AALLLEPGEFRFVPGPLFAAVRVILLLDEINRAP--------PEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNP 163 (329)
T ss_pred hhhhccCCeEEEecCCcccccceEEEEeccccCC--------HHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCc
Confidence 11100 0000000111 399999999874 3677788888854 34568888898
Q ss_pred hHHHHhhhcCHHHHcccc-eEEeeCC-CHHHHHHHHH
Q psy14500 170 NEYRQYIEKDAAFERRFQ-KILVEEP-DIEETISILR 204 (938)
Q Consensus 170 ~~~~~~~~ld~al~~Rf~-~i~~~~p-~~~e~~~il~ 204 (938)
.++.....+++++++||. .+.++.| +.++...++.
T Consensus 164 ~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~ 200 (329)
T COG0714 164 GEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILA 200 (329)
T ss_pred cccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHH
Confidence 888888889999999995 5999999 5544444443
No 357
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.21 E-value=1.1e-10 Score=134.73 Aligned_cols=169 Identities=15% Similarity=0.251 Sum_probs=113.0
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEE
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLIL 534 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~ 534 (938)
..+++|+||||||||+|++++++.+... +..++++++.++..... ..+ .. .....+...++. ..+|+
T Consensus 148 ~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~-~~~-~~-------~~~~~~~~~~~~--~dlLi 216 (450)
T PRK00149 148 YNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV-NAL-RN-------NTMEEFKEKYRS--VDVLL 216 (450)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH-HHH-Hc-------CcHHHHHHHHhc--CCEEE
Confidence 3479999999999999999999998543 56677888877654311 111 00 011123333343 45999
Q ss_pred EccccccCH--HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh
Q psy14500 535 LDEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI 612 (938)
Q Consensus 535 lDEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 612 (938)
|||++.+.. ..+..|+.+++.- ...+..+|+|+|..+..+. .+.+.+.
T Consensus 217 iDDi~~l~~~~~~~~~l~~~~n~l----------~~~~~~iiits~~~p~~l~--------------------~l~~~l~ 266 (450)
T PRK00149 217 IDDIQFLAGKERTQEEFFHTFNAL----------HEAGKQIVLTSDRPPKELP--------------------GLEERLR 266 (450)
T ss_pred EehhhhhcCCHHHHHHHHHHHHHH----------HHCCCcEEEECCCCHHHHH--------------------HHHHHHH
Confidence 999998753 4567777776531 0112236778887665442 2567888
Q ss_pred hcCC--eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccc
Q psy14500 613 NRID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 613 ~R~~--~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
+|+. .++.+.+++.+++.+|++..+.. .+ +.++++++++|+... ...+|.+.|.
T Consensus 267 SRl~~gl~v~i~~pd~~~r~~il~~~~~~-------~~--~~l~~e~l~~ia~~~---~~~~R~l~~~ 322 (450)
T PRK00149 267 SRFEWGLTVDIEPPDLETRIAILKKKAEE-------EG--IDLPDEVLEFIAKNI---TSNVRELEGA 322 (450)
T ss_pred hHhcCCeeEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHcCc---CCCHHHHHHH
Confidence 9995 38999999999999997765543 23 779999999999843 1335666666
No 358
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.20 E-value=3.2e-10 Score=122.44 Aligned_cols=210 Identities=20% Similarity=0.234 Sum_probs=127.2
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc----CCCceEEecc----ccccc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----NEESIIRIDM----SEFIE 498 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~----~~~~~~~~~~----~~~~~ 498 (938)
+.++|+++++..+...++.+..+...++ ..++|+||||||||++|++|++.+.. ...++.++.. +.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r---~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e 127 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERK---QILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHE 127 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCC---cEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCcc
Confidence 3799999999999999988776543332 25899999999999999999998822 2335555544 21110
Q ss_pred h------------------------------hhhhhh---cCCCCC-------C------cc------ccccc-hh----
Q psy14500 499 K------------------------------HSISRL---IGAPPG-------Y------IG------YEEGG-YL---- 521 (938)
Q Consensus 499 ~------------------------------~~~~~l---~g~~~~-------~------~g------~~~~~-~l---- 521 (938)
. .....+ ++.... + +| .++.. .+
T Consensus 128 ~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~ 207 (361)
T smart00763 128 DPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELT 207 (361)
T ss_pred CCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHh
Confidence 0 000011 000000 0 00 00000 00
Q ss_pred ---------------------HHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCC
Q psy14500 522 ---------------------TEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG 580 (938)
Q Consensus 522 ---------------------~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~ 580 (938)
.+.+..+.+||+-|+|+.|++.++++.||.++++|.+...+......-+.+||++||..
T Consensus 208 G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~ 287 (361)
T smart00763 208 GKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNES 287 (361)
T ss_pred cccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHH
Confidence 12334455799999999999999999999999999987543222233456888999952
Q ss_pred chhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCC-CHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHH
Q psy14500 581 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYL-NRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 659 (938)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l-~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 659 (938)
.- .. ........+|++||. +|.++.+ +.++=.+|.++.+.. ..-....+.+.+++
T Consensus 288 e~--~~---------------~~~~k~~eaf~dR~~-~i~vpY~l~~~~E~~Iy~k~~~~------s~~~~~~~aP~~le 343 (361)
T smart00763 288 EW--QR---------------FKSNKKNEALLDRII-KVKVPYCLRVSEEAQIYEKLLRN------SDLTEAHIAPHTLE 343 (361)
T ss_pred HH--hh---------------hhccccchhhhhceE-EEeCCCcCCHHHHHHHHHHHhcc------CcCcccccCchHHH
Confidence 11 00 011234678999995 6666654 445566664444432 11123567777777
Q ss_pred HHHh
Q psy14500 660 KISN 663 (938)
Q Consensus 660 ~L~~ 663 (938)
.++.
T Consensus 344 ~aa~ 347 (361)
T smart00763 344 MAAL 347 (361)
T ss_pred HHHH
Confidence 7765
No 359
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=2.1e-10 Score=125.25 Aligned_cols=166 Identities=18% Similarity=0.193 Sum_probs=111.3
Q ss_pred CCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCC---------------CeEEEEehhhhhcCccccchHHHHHH
Q psy14500 50 RSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLS---------------KKILLLDIALLLAGTKYRGEFEDRLK 113 (938)
Q Consensus 50 ~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~---------------~~~~~~~~~~l~~~~~~~g~~~~~l~ 113 (938)
++.+| +||+||+|+|||++|+++|+.+.+.. |..... .+++.+....- ++. -....++
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~-~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~--i~id~iR 92 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEA-PQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKT--IKVDQVR 92 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCC--CCHHHHH
Confidence 44444 78999999999999999999987632 110001 12333332110 010 1122466
Q ss_pred HHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhHHHHhhhcCHHHHcccce
Q psy14500 114 KILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQK 188 (938)
Q Consensus 114 ~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~ 188 (938)
.+...+.. .++..|++||++|.|. .+++|.|+..+|. +++.+|.+|+.++ .+.|+++|||..
T Consensus 93 ~l~~~~~~~~~~~~~kv~iI~~a~~m~--------~~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~ll~TI~SRc~~ 159 (328)
T PRK05707 93 ELVSFVVQTAQLGGRKVVLIEPAEAMN--------RNAANALLKSLEEPSGDTVLLLISHQPS-----RLLPTIKSRCQQ 159 (328)
T ss_pred HHHHHHhhccccCCCeEEEECChhhCC--------HHHHHHHHHHHhCCCCCeEEEEEECChh-----hCcHHHHhhcee
Confidence 66655542 2345688999999994 4688999999987 5788889998887 799999999999
Q ss_pred EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHH
Q psy14500 189 ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 248 (938)
Q Consensus 189 i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 248 (938)
+.|++|+.++....|..... ..+++....++.++.+.. ..|..+.+
T Consensus 160 ~~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~l~la~Gsp------~~A~~l~~ 205 (328)
T PRK05707 160 QACPLPSNEESLQWLQQALP--------ESDERERIELLTLAGGSP------LRALQLHE 205 (328)
T ss_pred eeCCCcCHHHHHHHHHHhcc--------cCChHHHHHHHHHcCCCH------HHHHHHHC
Confidence 99999999988877763211 234555556667766544 66666543
No 360
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.20 E-value=1.6e-10 Score=136.22 Aligned_cols=194 Identities=15% Similarity=0.170 Sum_probs=124.6
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccc--hhHHHHHhCCCEEEE
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGG--YLTEIVRRKPYSLIL 534 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~--~l~~~~~~~~~~vl~ 534 (938)
.+++||.|+||||||++|++|++.+.. ..+|+.+.+.. + ...++|.-.-+.....+. .-.+.+..+.+++||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~~-t----~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLGV-T----EDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCccc-c----hhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 468999999999999999999998743 34688777521 1 234555421000000000 011234456779999
Q ss_pred EccccccCHHHHHHHHHhhcCCceecC-CCcee-ecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh
Q psy14500 535 LDEIEKANSDVFNILLQILDDGRLTDN-RGRTI-NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI 612 (938)
Q Consensus 535 lDEid~~~~~~~~~Ll~~le~g~~~~~-~g~~~-~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~ 612 (938)
+|||+.+++.+|+.|+++|++|.++.. .|... ...++.+|+|+|.... ...|++.++
T Consensus 90 lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~---------------------~g~L~~~Ll 148 (589)
T TIGR02031 90 VDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG---------------------GGGLPDHLL 148 (589)
T ss_pred ccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc---------------------cCCCCHHHH
Confidence 999999999999999999999986532 23333 3356788888886421 236899999
Q ss_pred hcCCeEEEccCC-CHHHHHHHHHHHHHHHH--------------HHHHccCCeEEEcHHHHHHHHhhccccccccccccc
Q psy14500 613 NRIDDIIVFRYL-NRKNILSIANIQLNILK--------------NKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHG 677 (938)
Q Consensus 613 ~R~~~~i~f~~l-~~e~~~~i~~~~l~~~~--------------~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~ 677 (938)
+||+..|....+ ..++..+|+...+..+. ...+..--.+.++++++++|+.... .+|+...++
T Consensus 149 dRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~--~~gv~s~Ra 226 (589)
T TIGR02031 149 DRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAA--SLGISGHRA 226 (589)
T ss_pred HhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHH--HcCCCCccH
Confidence 999887666655 44556677766543221 0112222347889999999988553 344544544
Q ss_pred ch
Q psy14500 678 CK 679 (938)
Q Consensus 678 ~~ 679 (938)
.+
T Consensus 227 ~i 228 (589)
T TIGR02031 227 DL 228 (589)
T ss_pred HH
Confidence 43
No 361
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.20 E-value=5.7e-10 Score=123.55 Aligned_cols=171 Identities=19% Similarity=0.352 Sum_probs=113.5
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.+++.+..++.+...+.... +++|+||||||||++|+.+|..+.+. ..+..+++..+....+...++
T Consensus 175 ~d~~i~e~~le~l~~~L~~~~-----------~iil~GppGtGKT~lA~~la~~l~~~-~~~~~v~~VtFHpsySYeDFI 242 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIKK-----------NIILQGPPGVGKTFVARRLAYLLTGE-KAPQRVNMVQFHQSYSYEDFI 242 (459)
T ss_pred hcccCCHHHHHHHHHHHhcCC-----------CEEEECCCCCCHHHHHHHHHHHhcCC-cccceeeEEeecccccHHHHh
Confidence 346777777888877776332 79999999999999999999988543 244455665665555555555
Q ss_pred -CCCCCCcccccc-chhHHHH---HhC--CCEEEEEccccccCHH-HHHHHHHhhcCCc------ee----cCCC-ceee
Q psy14500 507 -GAPPGYIGYEEG-GYLTEIV---RRK--PYSLILLDEIEKANSD-VFNILLQILDDGR------LT----DNRG-RTIN 567 (938)
Q Consensus 507 -g~~~~~~g~~~~-~~l~~~~---~~~--~~~vl~lDEid~~~~~-~~~~Ll~~le~g~------~~----~~~g-~~~~ 567 (938)
|..++++|+... +.+..++ ... .+.|||||||++.+.+ ++..|+++||.+. +. ...+ .-..
T Consensus 243 ~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~i 322 (459)
T PRK11331 243 QGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYV 322 (459)
T ss_pred cccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccC
Confidence 666666776543 2332332 222 3689999999999965 6889999998531 11 1111 2233
Q ss_pred cCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccC-CCHHHHH
Q psy14500 568 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRY-LNRKNIL 630 (938)
Q Consensus 568 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~-l~~e~~~ 630 (938)
..++.||+|.|.....+ ..++.+|..|| ..|.+.| ++...+.
T Consensus 323 P~Nl~IIgTMNt~Drs~--------------------~~lD~AlrRRF-~fi~i~p~~~~~~~~ 365 (459)
T PRK11331 323 PENVYIIGLMNTADRSL--------------------AVVDYALRRRF-SFIDIEPGFDTPQFR 365 (459)
T ss_pred CCCeEEEEecCccccch--------------------hhccHHHHhhh-heEEecCCCChHHHH
Confidence 58899999999754322 13788999999 4677766 4444333
No 362
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=1.9e-10 Score=124.14 Aligned_cols=160 Identities=13% Similarity=0.151 Sum_probs=109.4
Q ss_pred ccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch-------hh
Q psy14500 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK-------HS 501 (938)
Q Consensus 429 viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~-------~~ 501 (938)
+-++....+.+...+...+. .+.+||+||.|+||+++|+.+|+.+......- .-|...... |.
T Consensus 5 yPWl~~~~~~l~~~~~~~rl--------~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~~~g~HP 74 (319)
T PRK06090 5 YPWLVPVWQNWKAGLDAGRI--------PGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQSGNHP 74 (319)
T ss_pred cccHHHHHHHHHHHHHcCCc--------ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHHHcCCCC
Confidence 34667777888888765543 25799999999999999999999985433110 112111110 00
Q ss_pred hhhhcCCC--CCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEE
Q psy14500 502 ISRLIGAP--PGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 575 (938)
Q Consensus 502 ~~~l~g~~--~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 575 (938)
....+... ...++.+..+.+...+.. +.+.|++||++|+|+..++|+||+.||+ +..+++||+
T Consensus 75 D~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL 143 (319)
T PRK06090 75 DLHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-----------PAPNCLFLL 143 (319)
T ss_pred CEEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 00011110 012333334445445433 3478999999999999999999999998 778899999
Q ss_pred ecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH
Q psy14500 576 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 634 (938)
Q Consensus 576 ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~ 634 (938)
+|+... .+.|.++||| ..+.|++++.+++.+.+.
T Consensus 144 ~t~~~~------------------------~lLpTI~SRC-q~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 144 VTHNQK------------------------RLLPTIVSRC-QQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred EECChh------------------------hChHHHHhcc-eeEeCCCCCHHHHHHHHH
Confidence 888633 3678999999 599999999988887743
No 363
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.20 E-value=2.5e-10 Score=140.34 Aligned_cols=184 Identities=20% Similarity=0.272 Sum_probs=124.7
Q ss_pred CCCCccccHHHHHHHHHHHhcC--------CC-CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQRR--------SK-NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL 99 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~~~--------~~-~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~ 99 (938)
-.+.++||+.+++.+...+.+. .+ .++||+||+|||||++|++||+.+... +..++.++++...
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~-------~~~~i~id~se~~ 638 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS-------DDAMVRIDMSEFM 638 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC-------CCcEEEEEhHHhh
Confidence 3557999999998888877531 11 358999999999999999999988543 3356677776543
Q ss_pred cC----------ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCc---------
Q psy14500 100 AG----------TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE--------- 160 (938)
Q Consensus 100 ~~----------~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~--------- 160 (938)
.. ..|.|.-+ ...+.++.+..+..||+|||++.+. .++++.|+++++.|.
T Consensus 639 ~~~~~~~LiG~~pgy~g~~~---~g~l~~~v~~~p~~vLllDEieka~--------~~v~~~Ll~ile~g~l~d~~gr~v 707 (857)
T PRK10865 639 EKHSVSRLVGAPPGYVGYEE---GGYLTEAVRRRPYSVILLDEVEKAH--------PDVFNILLQVLDDGRLTDGQGRTV 707 (857)
T ss_pred hhhhHHHHhCCCCcccccch---hHHHHHHHHhCCCCeEEEeehhhCC--------HHHHHHHHHHHhhCceecCCceEE
Confidence 21 11222111 1223333333445799999999883 467888888886542
Q ss_pred ----eEEEEecChh--HHH------------H------hhhcCHHHHcccc-eEEeeCCCHHHHHHHHHhhhhhhhc---
Q psy14500 161 ----LHCIGATTLN--EYR------------Q------YIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEV--- 212 (938)
Q Consensus 161 ----i~vI~~tn~~--~~~------------~------~~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~--- 212 (938)
.++|+|||.. .+. . .....|+|++|++ .+.|.+++.++...|++.++.....
T Consensus 708 d~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~ 787 (857)
T PRK10865 708 DFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLE 787 (857)
T ss_pred eecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3478888862 100 0 1125689999996 5889999999999998877765321
Q ss_pred --ccCCCCCHHHHHHHHHhh
Q psy14500 213 --HHGVEITDPAIVAASELS 230 (938)
Q Consensus 213 --~~~~~i~~~~l~~~~~~s 230 (938)
...+.+++++++.++...
T Consensus 788 ~~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 788 ERGYEIHISDEALKLLSENG 807 (857)
T ss_pred hCCCcCcCCHHHHHHHHHcC
Confidence 234678999999888753
No 364
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.19 E-value=1.4e-10 Score=129.04 Aligned_cols=144 Identities=25% Similarity=0.354 Sum_probs=99.0
Q ss_pred cccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC---------------------
Q psy14500 428 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--------------------- 486 (938)
Q Consensus 428 ~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~--------------------- 486 (938)
.++|++.+...+......... ..+.+||+||||+|||++|.++|+.+++...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~-------~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR-------LPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC-------CCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC
Confidence 456777777777777764431 1124999999999999999999999965432
Q ss_pred ceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC
Q psy14500 487 SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR 562 (938)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~ 562 (938)
.+..++.++..... +..+..+.+..... ..+..|++|||+|.++.+++|+|++.+|+
T Consensus 75 d~lel~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe------- 135 (325)
T COG0470 75 DFLELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE------- 135 (325)
T ss_pred ceEEecccccCCCc------------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhcc-------
Confidence 22223222211100 01111122222221 24578999999999999999999999997
Q ss_pred CceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCH
Q psy14500 563 GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR 626 (938)
Q Consensus 563 g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~ 626 (938)
+..++.||++||... .+.+++.+|| .++.|.|++.
T Consensus 136 ----p~~~~~~il~~n~~~------------------------~il~tI~SRc-~~i~f~~~~~ 170 (325)
T COG0470 136 ----PPKNTRFILITNDPS------------------------KILPTIRSRC-QRIRFKPPSR 170 (325)
T ss_pred ----CCCCeEEEEEcCChh------------------------hccchhhhcc-eeeecCCchH
Confidence 778899999999533 3567899999 5999999443
No 365
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.19 E-value=1.5e-10 Score=138.27 Aligned_cols=133 Identities=21% Similarity=0.381 Sum_probs=98.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCcccc--ccchhHHHHHhCCCEEEEEc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYE--EGGYLTEIVRRKPYSLILLD 536 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~--~~~~l~~~~~~~~~~vl~lD 536 (938)
.++|+||||||||++|++++..+ +.+|+.++++++... +.|.. ..+.++...+...++|||||
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~~------------~~g~~~~~~~~~f~~a~~~~P~IifID 251 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM------------FVGVGASRVRDMFEQAKKAAPCIIFID 251 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHHh------------hhcccHHHHHHHHHHHHhcCCcEEEeh
Confidence 59999999999999999999988 779999988876542 22221 12334444556667999999
Q ss_pred cccccCH--------------HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHH
Q psy14500 537 EIEKANS--------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNE 602 (938)
Q Consensus 537 Eid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~ 602 (938)
|+|.+.. .+.+.||..|+.- .....+++|+|||.+.
T Consensus 252 EiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~---------~~~~~vivIaaTN~p~--------------------- 301 (644)
T PRK10733 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGF---------EGNEGIIVIAATNRPD--------------------- 301 (644)
T ss_pred hHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcc---------cCCCCeeEEEecCChh---------------------
Confidence 9998732 3567777777631 1234578899999643
Q ss_pred HhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 603 VKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 603 l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
.+++.++ +|||..|.|+.++.++..+|+..++..
T Consensus 302 ---~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 302 ---VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred ---hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 3667777 499999999999999999997776644
No 366
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.19 E-value=4.5e-10 Score=133.44 Aligned_cols=200 Identities=14% Similarity=0.131 Sum_probs=126.9
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHhhhcC-C---C--------CCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-
Q psy14500 417 KLLNIENLLCKRVVGQDEAISAVSNAIRRSRSG-L---S--------DAKRPYGSFMFLGPTGVGKTELCKTLSACIFN- 483 (938)
Q Consensus 417 ~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~-~---~--------~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~- 483 (938)
....+...+.-.|.|++.+++.+.-.+-..... . . ..-+...++||+|+||||||.+|+++++...+
T Consensus 440 i~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~ 519 (915)
T PTZ00111 440 IYRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRS 519 (915)
T ss_pred HHHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCcc
Confidence 345667788889999999999987777432210 0 0 11233448999999999999999999987632
Q ss_pred ---CCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceec
Q psy14500 484 ---NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD 560 (938)
Q Consensus 484 ---~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~ 560 (938)
++.++..+++...... .+.. .|. -..-.+.+..+.+|+++|||++++++..|..|+.+|+++.++.
T Consensus 520 ~ytsG~~~s~vgLTa~~~~------~d~~---tG~--~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI 588 (915)
T PTZ00111 520 IYTSGKSSSSVGLTASIKF------NESD---NGR--AMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTI 588 (915)
T ss_pred ccCCCCCCccccccchhhh------cccc---cCc--ccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEE
Confidence 2345565555543210 0000 010 0011234556778999999999999999999999999998764
Q ss_pred CC-Cc-eeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeE-EEccCCCHHHHHHHHHHHH
Q psy14500 561 NR-GR-TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDI-IVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 561 ~~-g~-~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~-i~f~~l~~e~~~~i~~~~l 637 (938)
.. |. ..-..++.+|+|+|.-...+.... .+. -.-.|++++++|||.+ +....++++.=..|+.+.+
T Consensus 589 ~KaGi~~tL~ar~rVIAAaNP~~gryd~~~---------s~~--eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 589 AKAGIVATLKAETAILASCNPINSRYNKNK---------AVI--ENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred ecCCcceecCCCeEEEEEcCCcccccCccc---------Ccc--cccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHH
Confidence 32 33 333477899999997432211100 000 0124789999999985 4455566655455555555
Q ss_pred H
Q psy14500 638 N 638 (938)
Q Consensus 638 ~ 638 (938)
.
T Consensus 658 ~ 658 (915)
T PTZ00111 658 K 658 (915)
T ss_pred H
Confidence 3
No 367
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.19 E-value=1.3e-10 Score=127.07 Aligned_cols=161 Identities=12% Similarity=0.079 Sum_probs=109.8
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEeccccc---cc-hhhhh
Q psy14500 430 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSEF---IE-KHSIS 503 (938)
Q Consensus 430 iGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~~---~~-~~~~~ 503 (938)
-++...-+.+.+.+...+. .+.+||+||+|+||+++|.++|+.++..... -.+-.|... .. .|..-
T Consensus 5 PWl~~~~~~l~~~~~~~rl--------~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (334)
T PRK07993 5 PWLRPDYEQLVGSYQAGRG--------HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_pred CCChHHHHHHHHHHHcCCc--------ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 4667777888888875543 2579999999999999999999999542110 011112111 00 00000
Q ss_pred hhcCCCC--CCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEec
Q psy14500 504 RLIGAPP--GYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 577 (938)
Q Consensus 504 ~l~g~~~--~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 577 (938)
..+.... ..++.+..+.+...+. .+.+.|++||++|+|+.+++|+||+.||+ +..+++||++|
T Consensus 77 ~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t 145 (334)
T PRK07993 77 YTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-----------PPENTWFFLAC 145 (334)
T ss_pred EEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-----------CCCCeEEEEEE
Confidence 0111110 1244444455555543 34578999999999999999999999998 77889999988
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 634 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~ 634 (938)
+... .+.|.++|||. .+.|+|++.+++...+.
T Consensus 146 ~~~~------------------------~lLpTIrSRCq-~~~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 146 REPA------------------------RLLATLRSRCR-LHYLAPPPEQYALTWLS 177 (334)
T ss_pred CChh------------------------hChHHHHhccc-cccCCCCCHHHHHHHHH
Confidence 8643 36789999996 88999999988887643
No 368
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.19 E-value=4.7e-10 Score=126.73 Aligned_cols=217 Identities=18% Similarity=0.207 Sum_probs=131.6
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC------CCceEEeccccccchh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN------EESIIRIDMSEFIEKH 500 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~------~~~~~~~~~~~~~~~~ 500 (938)
+.++|.+..++.+...+.....+ .. .++++++||||||||++++.+.+.+... ...++.++|.......
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~----~~-~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG----SR-PSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC----CC-CCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 46889999999999988765432 11 2369999999999999999999876321 1467888987765432
Q ss_pred hh-----hhhc--CCCCCCcccccc---chhHHHHH-hCCCEEEEEccccccCH---HHHHHHHHhhcCCceecCCCcee
Q psy14500 501 SI-----SRLI--GAPPGYIGYEEG---GYLTEIVR-RKPYSLILLDEIEKANS---DVFNILLQILDDGRLTDNRGRTI 566 (938)
Q Consensus 501 ~~-----~~l~--g~~~~~~g~~~~---~~l~~~~~-~~~~~vl~lDEid~~~~---~~~~~Ll~~le~g~~~~~~g~~~ 566 (938)
.. ..+. |......|.... ..+...+. ..+..||+|||+|.+.. +++..|+...+... .
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~--------~ 161 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD--------L 161 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC--------C
Confidence 22 1222 222212222111 12223332 34457899999999953 33334433321110 1
Q ss_pred ecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCC-eEEEccCCCHHHHHHHHHHHHHHHHHHHH
Q psy14500 567 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNKLL 645 (938)
Q Consensus 567 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~e~~~~i~~~~l~~~~~~~~ 645 (938)
...++.+|+++|.... ...+.+.+.+|+. ..+.|+|++.+++.+|+...+..- +
T Consensus 162 ~~~~v~lI~i~n~~~~---------------------~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~---~- 216 (365)
T TIGR02928 162 DNAKVGVIGISNDLKF---------------------RENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA---F- 216 (365)
T ss_pred CCCeEEEEEEECCcch---------------------HhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh---c-
Confidence 2245678888886321 1235666777774 479999999999999988766421 1
Q ss_pred ccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHH
Q psy14500 646 KMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLK 687 (938)
Q Consensus 646 ~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~ 687 (938)
. ...++++++++++.... ...||+...++.+..+.+
T Consensus 217 -~--~~~~~~~~l~~i~~~~~---~~~Gd~R~al~~l~~a~~ 252 (365)
T TIGR02928 217 -Y--DGVLDDGVIPLCAALAA---QEHGDARKAIDLLRVAGE 252 (365)
T ss_pred -c--CCCCChhHHHHHHHHHH---HhcCCHHHHHHHHHHHHH
Confidence 1 12478888888776321 112666666555666553
No 369
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=1.5e-10 Score=126.09 Aligned_cols=141 Identities=16% Similarity=0.188 Sum_probs=95.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCC---ceEEecccccc---c-hhhhhhhcCCC---------------------
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEE---SIIRIDMSEFI---E-KHSISRLIGAP--------------------- 509 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~---~~~~~~~~~~~---~-~~~~~~l~g~~--------------------- 509 (938)
+.+||+||+|+||+++|+.+|+.++.... .-.+..|.... . .|.....+...
T Consensus 22 ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~ 101 (342)
T PRK06964 22 HALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADEG 101 (342)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhcc
Confidence 57999999999999999999999854321 00111121110 0 00000001000
Q ss_pred -------CCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecC
Q psy14500 510 -------PGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 578 (938)
Q Consensus 510 -------~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 578 (938)
...++.+..+.+...+. .+.+.|++||++|+|+..++|+||+.||+ +..+++||++|+
T Consensus 102 ~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t~ 170 (342)
T PRK06964 102 GKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-----------PPPGTVFLLVSA 170 (342)
T ss_pred cccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCcCcEEEEEEC
Confidence 01223333344444442 34478999999999999999999999998 778888998888
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 634 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~ 634 (938)
... .+.|.++||| ..+.|+|++.+++.+.+.
T Consensus 171 ~~~------------------------~LLpTI~SRc-q~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 171 RID------------------------RLLPTILSRC-RQFPMTVPAPEAAAAWLA 201 (342)
T ss_pred Chh------------------------hCcHHHHhcC-EEEEecCCCHHHHHHHHH
Confidence 633 4778999999 699999999998888754
No 370
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.18 E-value=2.1e-10 Score=125.95 Aligned_cols=177 Identities=19% Similarity=0.209 Sum_probs=112.6
Q ss_pred ccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc--------
Q psy14500 33 VIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT-------- 102 (938)
Q Consensus 33 lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~-------- 102 (938)
+||++..++++...+.+ ....+|||+|++||||+++|++|+....+. +.+++.++|+.+....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~-------~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKRW-------QGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCcc-------CCCeEEEeCCCCChHHHHHHHhcc
Confidence 57888888888876653 556789999999999999999999866432 5678888886542100
Q ss_pred ---cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceEEEEe
Q psy14500 103 ---KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGA 166 (938)
Q Consensus 103 ---~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~vI~~ 166 (938)
.+.|... .-...+..+ .+.+||||||+.| +.+.+..|..+++.+ ++++|++
T Consensus 74 ~~g~~~ga~~-~~~G~~~~a----~gGtL~Ldei~~L--------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~a 140 (329)
T TIGR02974 74 EAGAFTGAQK-RHQGRFERA----DGGTLFLDELATA--------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCA 140 (329)
T ss_pred ccccccCccc-ccCCchhhC----CCCEEEeCChHhC--------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEEe
Confidence 0000000 001122222 2348999999999 346777788887543 3689999
Q ss_pred cChhHH--HHhhhcCHHHHcccceEEeeCCCHH----HHHHHHHhhhhhhhcccC----CCCCHHHHHHHHHh
Q psy14500 167 TTLNEY--RQYIEKDAAFERRFQKILVEEPDIE----ETISILRGLQKKYEVHHG----VEITDPAIVAASEL 229 (938)
Q Consensus 167 tn~~~~--~~~~~ld~al~~Rf~~i~~~~p~~~----e~~~il~~~~~~~~~~~~----~~i~~~~l~~~~~~ 229 (938)
|+.+-- ...-.+.+.|..||..+.+..|+.. ++..++++++.++....+ ..++++++..+...
T Consensus 141 t~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 141 TNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred chhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 987531 1112355788889976455555444 445566666665544322 35788877766554
No 371
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.18 E-value=3.2e-10 Score=133.00 Aligned_cols=128 Identities=13% Similarity=0.150 Sum_probs=87.7
Q ss_pred HHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCc----------eeecCCeEEEEecCCCchhhhhhhcchH
Q psy14500 523 EIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGR----------TINFRNTIIVMTSNLGSDKIKEMEKGDK 592 (938)
Q Consensus 523 ~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~----------~~~~~~~iiI~ttn~~~~~~~~~~~~~~ 592 (938)
+.+..+.+|+|||||++.+++..|..|+++|+++.+...++. ..-..++.+|+++|...
T Consensus 220 G~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l----------- 288 (637)
T PRK13765 220 GAIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA----------- 288 (637)
T ss_pred CceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH-----------
Confidence 345677789999999999999999999999999988653320 11134678899999632
Q ss_pred HHHHHHHHHHHhhccChHHhhcCC---eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhccccc
Q psy14500 593 EIIKLAVMNEVKIYFRPEFINRID---DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLI 669 (938)
Q Consensus 593 ~~~~~~~~~~l~~~~~~~l~~R~~---~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~ 669 (938)
...++|+|.+||. ..+.|..-.+ +..+....++..+.+.+...+....++++++..|.+.. .+.
T Consensus 289 -----------l~~~dpdL~~rfk~~~v~v~f~~~~~-d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~-~R~ 355 (637)
T PRK13765 289 -----------LENMHPALRSRIKGYGYEVYMRDTME-DTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREA-KRR 355 (637)
T ss_pred -----------HHhhhHHHHHHhccCeEEEEcccccC-CCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHH-HHH
Confidence 2235789999986 4566665433 44455556666666666655444579999999998743 333
Q ss_pred ccccc
Q psy14500 670 YGARD 674 (938)
Q Consensus 670 ~~~~d 674 (938)
-|.++
T Consensus 356 ag~r~ 360 (637)
T PRK13765 356 AGRKG 360 (637)
T ss_pred hCCcc
Confidence 34443
No 372
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.17 E-value=3e-10 Score=130.72 Aligned_cols=168 Identities=16% Similarity=0.241 Sum_probs=115.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhcc--CCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEE
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFN--NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 535 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 535 (938)
.+++|+|++|+|||+|+++|++.+.. .+..+.++.+.+|....... +.. .....+...++. ..+|+|
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~a-l~~--------~~~~~f~~~y~~--~DLLlI 383 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINS-IRD--------GKGDSFRRRYRE--MDILLV 383 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHH-HHh--------ccHHHHHHHhhc--CCEEEE
Confidence 35999999999999999999998853 35678888887776532111 100 001123333333 369999
Q ss_pred ccccccCH--HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh
Q psy14500 536 DEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN 613 (938)
Q Consensus 536 DEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 613 (938)
|||+.+.. ..+..|+.+++.- ...+..+|+|||.....+. .+.+.|.+
T Consensus 384 DDIq~l~gke~tqeeLF~l~N~l----------~e~gk~IIITSd~~P~eL~--------------------~l~~rL~S 433 (617)
T PRK14086 384 DDIQFLEDKESTQEEFFHTFNTL----------HNANKQIVLSSDRPPKQLV--------------------TLEDRLRN 433 (617)
T ss_pred ehhccccCCHHHHHHHHHHHHHH----------HhcCCCEEEecCCChHhhh--------------------hccHHHHh
Confidence 99998753 4567777777641 1122347789998766542 36778999
Q ss_pred cCCe--EEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccc
Q psy14500 614 RIDD--IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 614 R~~~--~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
||.. ++.+.+++.+...+|+.+.+ ...+ +.+++++++||+... . -.++.|.|.
T Consensus 434 Rf~~GLvv~I~~PD~EtR~aIL~kka-------~~r~--l~l~~eVi~yLa~r~-~--rnvR~Lega 488 (617)
T PRK14086 434 RFEWGLITDVQPPELETRIAILRKKA-------VQEQ--LNAPPEVLEFIASRI-S--RNIRELEGA 488 (617)
T ss_pred hhhcCceEEcCCCCHHHHHHHHHHHH-------HhcC--CCCCHHHHHHHHHhc-c--CCHHHHHHH
Confidence 9954 89999999999999976544 3334 788999999998832 1 236666666
No 373
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.17 E-value=4.3e-10 Score=123.65 Aligned_cols=180 Identities=18% Similarity=0.173 Sum_probs=113.9
Q ss_pred CCCCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC---cc
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---TK 103 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~---~~ 103 (938)
.++++||.+..++++.+.+.+ ....+|||+|++||||+++|++++...... +.+++.++|..+... ..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~-------~~pfv~v~c~~~~~~~~~~~ 76 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDSE 76 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCcc-------CCCeEEEeCCCCCHHHHHHH
Confidence 467899999999888887653 556789999999999999999999755322 457888888654210 00
Q ss_pred --------ccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceE
Q psy14500 104 --------YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELH 162 (938)
Q Consensus 104 --------~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~ 162 (938)
+.|.... ....+..+ .+..|||||++.|. ...+..|..+++.+ +++
T Consensus 77 lfg~~~~~~~g~~~~-~~g~l~~a----~gGtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 77 LFGHEAGAFTGAQKR-HPGRFERA----DGGTLFLDELATAP--------MLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HccccccccCCcccc-cCCchhcc----CCCeEEeCChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 0010000 01122222 13389999999993 45677777777543 378
Q ss_pred EEEecChhHH--HHhhhcCHHHHcccceEEeeCCCHHHHH----HHHHhhhhhhhcccC----CCCCHHHHHHHHH
Q psy14500 163 CIGATTLNEY--RQYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG----VEITDPAIVAASE 228 (938)
Q Consensus 163 vI~~tn~~~~--~~~~~ld~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~----~~i~~~~l~~~~~ 228 (938)
+|++|+..-- ...-.+.+.|..||..+.+..|+..+|. .++++++.++....+ ..++++++..+..
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~ 219 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLN 219 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHh
Confidence 9998886531 1122456788889976566666555554 555666555433322 2466666665544
No 374
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.17 E-value=6.2e-10 Score=120.26 Aligned_cols=183 Identities=15% Similarity=0.189 Sum_probs=120.9
Q ss_pred cHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC--cCC---------CeEEEEehhhhhcCcc
Q psy14500 36 RDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS--LLS---------KKILLLDIALLLAGTK 103 (938)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~--~~~---------~~~~~~~~~~l~~~~~ 103 (938)
++...+++...+.+++.+| +||+||+|+||+++|.++|+.+.+...... ... .+++.+....-..+.+
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 4567788888888877777 789999999999999999999876431110 000 0122221000000000
Q ss_pred c-cchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--ceEEEEecChhHHHHhhh
Q psy14500 104 Y-RGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIE 177 (938)
Q Consensus 104 ~-~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~i~vI~~tn~~~~~~~~~ 177 (938)
. ..-....++.+.+.+... ++..|++||++|.|. .+++|.|+..||.. ++++|.+|+.++ .
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~~~fiL~~~~~~-----~ 155 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN--------RAACNALLKTLEEPSPGRYLWLISAQPA-----R 155 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC--------HHHHHHHHHHhhCCCCCCeEEEEECChh-----h
Confidence 0 001233566666655422 334699999999993 46788999999864 778888888887 8
Q ss_pred cCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHH
Q psy14500 178 KDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLI 247 (938)
Q Consensus 178 ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll 247 (938)
+.|+++|||..+.|++|+.++....|.. .+ +++.....++.++++.. ..|..++
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~--------~~--~~~~~a~~~~~l~~G~p------~~A~~~~ 209 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLA--------QG--VSERAAQEALDAARGHP------GLAAQWL 209 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHH--------cC--CChHHHHHHHHHcCCCH------HHHHHHh
Confidence 8999999999999999999888777652 12 34444555667766543 5555554
No 375
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.17 E-value=5.2e-10 Score=138.24 Aligned_cols=181 Identities=19% Similarity=0.290 Sum_probs=123.4
Q ss_pred CCccccHHHHHHHHHHHhcC---------CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14500 31 DPVIGRDDEIRRAIQVLQRR---------SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 101 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~~~---------~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~ 101 (938)
+.++||+.+++.+...+.+. +...+||+||||||||++|++||+.+... +.+++.++++.....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-------~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD-------EDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhhccc
Confidence 47899999999999987642 12458999999999999999999987543 345666776543211
Q ss_pred ----------ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC------------
Q psy14500 102 ----------TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 159 (938)
Q Consensus 102 ----------~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------ 159 (938)
..|.|-.+ ...+.++.+..+.+||+|||++.+. .++++.|+++++.|
T Consensus 638 ~~~~~l~g~~~g~~g~~~---~g~l~~~v~~~p~~vlllDeieka~--------~~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEE---GGQLTEAVRRKPYSVVLFDEVEKAH--------PDVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred chHHHhcCCCCCccCccc---ccHHHHHHHcCCCcEEEEeccccCC--------HHHHHHHHHHHhcCceecCCCeEEec
Confidence 11222111 1122222223445799999999883 47888899988654
Q ss_pred -ceEEEEecChhHH--H------------------HhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhc---c-
Q psy14500 160 -ELHCIGATTLNEY--R------------------QYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEV---H- 213 (938)
Q Consensus 160 -~i~vI~~tn~~~~--~------------------~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~---~- 213 (938)
+.++|+|||...- . ..-...|.|..|++. +.|.+++.++...|+...+..+.. .
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~ 786 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAER 786 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3458899886210 0 011246789999975 889999999999998766553221 1
Q ss_pred -cCCCCCHHHHHHHHHh
Q psy14500 214 -HGVEITDPAIVAASEL 229 (938)
Q Consensus 214 -~~~~i~~~~l~~~~~~ 229 (938)
..+.+++++++.++..
T Consensus 787 ~~~l~i~~~a~~~L~~~ 803 (852)
T TIGR03346 787 KITLELSDAALDFLAEA 803 (852)
T ss_pred CCeecCCHHHHHHHHHh
Confidence 2367899999998875
No 376
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.16 E-value=2.3e-10 Score=135.17 Aligned_cols=185 Identities=22% Similarity=0.276 Sum_probs=120.7
Q ss_pred HhcCCCCCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14500 25 ARLGKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 102 (938)
Q Consensus 25 ~~~~~~~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~ 102 (938)
.+..+|+.+||++..++++.+.+.+ ....+|||+||+|||||++|++|+...... +.+++.+||..+....
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~-------~~pfv~i~c~~~~~~~ 262 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPRA-------KRPFVKVNCAALSETL 262 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCCC-------CCCeEEeecCCCCHHH
Confidence 3446899999999999998887663 556789999999999999999999876432 5678888886542100
Q ss_pred -----------cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC------------
Q psy14500 103 -----------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 159 (938)
Q Consensus 103 -----------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------ 159 (938)
.+.|... .-...+..+ .+.+|||||++.| +.+.+..|..+++.+
T Consensus 263 ~~~~lfg~~~~~~~~~~~-~~~g~~~~a----~~GtL~ldei~~L--------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~ 329 (534)
T TIGR01817 263 LESELFGHEKGAFTGAIA-QRKGRFELA----DGGTLFLDEIGEI--------SPAFQAKLLRVLQEGEFERVGGNRTLK 329 (534)
T ss_pred HHHHHcCCCCCccCCCCc-CCCCccccc----CCCeEEEechhhC--------CHHHHHHHHHHHhcCcEEECCCCceEe
Confidence 0000000 000111111 2348999999999 346777788887653
Q ss_pred -ceEEEEecChhHHH--HhhhcCHHHHcccce--EEeeCCC--HHHHHHHHHhhhhhhhcccC--CCCCHHHHHHHHHh
Q psy14500 160 -ELHCIGATTLNEYR--QYIEKDAAFERRFQK--ILVEEPD--IEETISILRGLQKKYEVHHG--VEITDPAIVAASEL 229 (938)
Q Consensus 160 -~i~vI~~tn~~~~~--~~~~ld~al~~Rf~~--i~~~~p~--~~e~~~il~~~~~~~~~~~~--~~i~~~~l~~~~~~ 229 (938)
++++|++|+.+... ..-.+.+.|..|+.. |.+|++. .++...++++++.++....+ +.++++++..+..+
T Consensus 330 ~~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~ 408 (534)
T TIGR01817 330 VDVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSC 408 (534)
T ss_pred ecEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC
Confidence 37899988865311 112356778889876 4455553 35556777777766543222 56788877766654
No 377
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.16 E-value=2.2e-10 Score=126.76 Aligned_cols=158 Identities=20% Similarity=0.253 Sum_probs=96.6
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh----hhhhcCcccc
Q psy14500 30 LDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI----ALLLAGTKYR 105 (938)
Q Consensus 30 ~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~----~~l~~~~~~~ 105 (938)
++++++.++.++.++..+.. ..+++|+||||||||++|+.+|..+.....+ .....+.++. .+++.|..-.
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~---~~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAP---QRVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCccc---ceeeEEeecccccHHHHhcccCCC
Confidence 67888899999999998875 4899999999999999999999987432111 1112222221 2333222111
Q ss_pred --ch--HHHHHHHHHHHHHhc-CCCeEEEEeCccccccCCCCCCccchh---------hhhh--------hhccCCceEE
Q psy14500 106 --GE--FEDRLKKILKEISNN-QKDIIIFIDELHTMIGTGKVEGSIDAG---------NMLK--------PELSRGELHC 163 (938)
Q Consensus 106 --g~--~~~~l~~~~~~a~~~-~~~~iL~iDEid~l~~~~~~~~~~~~~---------~~L~--------~~l~~~~i~v 163 (938)
|- ....+..++..|... ..+++|||||+++...+.-.+.-..+. ..-+ .+.-..++.+
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~I 328 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYI 328 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEE
Confidence 10 011244555555533 357899999998775432000000000 0000 0111247899
Q ss_pred EEecChhHHHHhhhcCHHHHcccceEEeeC
Q psy14500 164 IGATTLNEYRQYIEKDAAFERRFQKILVEE 193 (938)
Q Consensus 164 I~~tn~~~~~~~~~ld~al~~Rf~~i~~~~ 193 (938)
|+|+|..+ +....+|.||+|||..|++.+
T Consensus 329 IgTMNt~D-rs~~~lD~AlrRRF~fi~i~p 357 (459)
T PRK11331 329 IGLMNTAD-RSLAVVDYALRRRFSFIDIEP 357 (459)
T ss_pred EEecCccc-cchhhccHHHHhhhheEEecC
Confidence 99999987 455579999999999888876
No 378
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.15 E-value=2.2e-10 Score=130.59 Aligned_cols=176 Identities=14% Similarity=0.212 Sum_probs=116.1
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc---------
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI--------- 497 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~--------- 497 (938)
..++||..+++.+...+... .+++|.||||+|||++++.|+..+..... -..++++.+.
T Consensus 191 ~~v~Gq~~~~~al~laa~~G-----------~~llliG~~GsGKTtLak~L~gllpp~~g-~e~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAAGG-----------HNLLLIGPPGTGKTMLASRINGLLPDLSN-EEALESAAILSLVNAESVQ 258 (506)
T ss_pred EEEECcHHHHhhhheeccCC-----------cEEEEECCCCCcHHHHHHHHhccCCCCCC-cEEEecchhhhhhcccccc
Confidence 45779988887765544321 37999999999999999999987732111 1112222211
Q ss_pred ---------chh---hhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC--C
Q psy14500 498 ---------EKH---SISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR--G 563 (938)
Q Consensus 498 ---------~~~---~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~--g 563 (938)
.++ +...++|. .. ..-.+.+..+.+++||+||++.+++.+|+.|++.||+|.++... +
T Consensus 259 ~~~~~rPfr~ph~~~s~~~l~GG-------g~-~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~ 330 (506)
T PRK09862 259 KQWRQRPFRSPHHSASLTAMVGG-------GA-IPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRA 330 (506)
T ss_pred CCcCCCCccCCCccchHHHHhCC-------Cc-eehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCc
Confidence 110 11122221 10 11235678888999999999999999999999999999986432 3
Q ss_pred ceeecCCeEEEEecCCCchhhhh--hhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHH
Q psy14500 564 RTINFRNTIIVMTSNLGSDKIKE--MEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRK 627 (938)
Q Consensus 564 ~~~~~~~~iiI~ttn~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e 627 (938)
......++.+|+|+|........ .|.+......++ ...++.++++|||..+.+++++.+
T Consensus 331 ~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y-----~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 331 KITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRY-----LNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred ceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHH-----HhhCCHhHHhhccEEEEeCCCCHH
Confidence 33456789999999975321111 133344444433 557899999999999999988655
No 379
>KOG1942|consensus
Probab=99.15 E-value=5.2e-10 Score=113.02 Aligned_cols=102 Identities=23% Similarity=0.363 Sum_probs=78.5
Q ss_pred CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHH-hhccC
Q psy14500 530 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEV-KIYFR 608 (938)
Q Consensus 530 ~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~ 608 (938)
++||||||++.++-+.+..|.+.||. .-..++|++||.|...+.... +.. -..++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES------------~iaPivifAsNrG~~~irGt~------------d~~sPhGip 352 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALES------------PIAPIVIFASNRGMCTIRGTE------------DILSPHGIP 352 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcC------------CCCceEEEecCCcceeecCCc------------CCCCCCCCC
Confidence 59999999999999999999999995 233478899998765442210 000 12578
Q ss_pred hHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 609 PEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 609 ~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
+++++|+ .+|+..+++++++++|+.... ...+ +.++++++++|...+
T Consensus 353 ~dllDRl-~Iirt~~y~~~e~r~Ii~~Ra-------~~E~--l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 353 PDLLDRL-LIIRTLPYDEEEIRQIIKIRA-------QVEG--LQVEEEALDLLAEIG 399 (456)
T ss_pred HHHhhhe-eEEeeccCCHHHHHHHHHHHH-------hhhc--ceecHHHHHHHHhhc
Confidence 9999999 799999999999999965433 3344 889999999998854
No 380
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.15 E-value=1.2e-09 Score=124.76 Aligned_cols=214 Identities=18% Similarity=0.195 Sum_probs=131.9
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhhh--
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSI-- 502 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~-- 502 (938)
+.++|.+..++.+...+.....+ ..+ .+++++||||||||++++.+++.+... +..++.++|....+....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~----~~~-~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRG----SRP-LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCC----CCC-CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 56778888888888888655422 122 368999999999999999999887433 467889998876553222
Q ss_pred ---hhhcCCCCCCcccccc---chhHHHHHh-CCCEEEEEccccccC----HHHHHHHHHhhcCCceecCCCceeecCCe
Q psy14500 503 ---SRLIGAPPGYIGYEEG---GYLTEIVRR-KPYSLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGRTINFRNT 571 (938)
Q Consensus 503 ---~~l~g~~~~~~g~~~~---~~l~~~~~~-~~~~vl~lDEid~~~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 571 (938)
..+.+......|.... ..+...+.. ....||+|||+|.+. .+.+..|+..++.. ...++
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~----------~~~~v 174 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY----------PGARI 174 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc----------CCCeE
Confidence 2222322222222211 122223332 345789999999886 45566666665531 12256
Q ss_pred EEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCC-eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 572 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 572 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
.+|+++|.... ...+.+.+.+|+. ..+.|+|++.+++.+|+...+.. .+. .
T Consensus 175 ~vI~i~~~~~~---------------------~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~---~~~----~ 226 (394)
T PRK00411 175 GVIGISSDLTF---------------------LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE---GFY----P 226 (394)
T ss_pred EEEEEECCcch---------------------hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh---hcc----c
Confidence 67787774221 1125566666763 47899999999999998766532 111 1
Q ss_pred EEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 651 LKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 651 l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
-.+++++++.+++..-.. .||++..++.+.++.
T Consensus 227 ~~~~~~~l~~i~~~~~~~---~Gd~r~a~~ll~~a~ 259 (394)
T PRK00411 227 GVVDDEVLDLIADLTARE---HGDARVAIDLLRRAG 259 (394)
T ss_pred CCCCHhHHHHHHHHHHHh---cCcHHHHHHHHHHHH
Confidence 247899999998844211 355555544454444
No 381
>KOG2035|consensus
Probab=99.15 E-value=4.8e-10 Score=112.88 Aligned_cols=163 Identities=18% Similarity=0.299 Sum_probs=121.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhh-------h--hhcCCCCCCccccccchhHHHHH--
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI-------S--RLIGAPPGYIGYEEGGYLTEIVR-- 526 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~-------~--~l~g~~~~~~g~~~~~~l~~~~~-- 526 (938)
++++||||+|+||.|.+.++-+.++|.+..-..++...+..+..- + .-+--.|+-.|..+.-.+.+.++
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 489999999999999999999999998887777777777654211 0 00111222334333222333322
Q ss_pred ----------hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHH
Q psy14500 527 ----------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIK 596 (938)
Q Consensus 527 ----------~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~ 596 (938)
..++.|++|.|+|++..++|.+|-..||. +..++.+|+.+|.-+.
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk-----------Ys~~~RlIl~cns~Sr-------------- 169 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK-----------YSSNCRLILVCNSTSR-------------- 169 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH-----------HhcCceEEEEecCccc--------------
Confidence 23478999999999999999999999995 6678899999997443
Q ss_pred HHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 597 LAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 597 ~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
+.+++.+|| ..|..+.++.+|+..++...+ ++++ +.+.++.+..+++.+
T Consensus 170 ----------iIepIrSRC-l~iRvpaps~eeI~~vl~~v~-------~kE~--l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 170 ----------IIEPIRSRC-LFIRVPAPSDEEITSVLSKVL-------KKEG--LQLPKELLKRIAEKS 218 (351)
T ss_pred ----------chhHHhhhe-eEEeCCCCCHHHHHHHHHHHH-------HHhc--ccCcHHHHHHHHHHh
Confidence 568899999 699999999999999955544 4455 667799999998854
No 382
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.15 E-value=3.1e-10 Score=130.95 Aligned_cols=184 Identities=14% Similarity=0.199 Sum_probs=113.2
Q ss_pred CCCCCccccHHHHHHHHHHHh--cCCCCCcEEEcCCCChHHHHHHHHHHHHH-cCCCCCCcCCCeEEEEehhhhhcCc--
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPNSLLSKKILLLDIALLLAGT-- 102 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~--~~~~~~vLL~Gp~GtGKT~la~~la~~l~-~~~~p~~~~~~~~~~~~~~~l~~~~-- 102 (938)
..|++++|++..++++...+. .....+|||+|++||||+++|++|+..+. ..+.+..-.+.+++.+||+.+....
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lle 295 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 295 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHH
Confidence 368899999999998888765 45667999999999999999999998721 1110011135688899987653110
Q ss_pred ---------cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------c
Q psy14500 103 ---------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------E 160 (938)
Q Consensus 103 ---------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 160 (938)
.+.|.....-..+|+.+. ...||||||+.| +...+..|+.+++.+ +
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~e~A~----gGTLfLdeI~~L--------p~~~Q~kLl~~L~e~~~~r~G~~~~~~~d 363 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFEIAH----GGTLFLDEIGEM--------PLPLQTRLLRVLEEKEVTRVGGHQPVPVD 363 (538)
T ss_pred HHhcCCccccccCccccccCCchhccC----CCEEEEcChHhC--------CHHHHHHHHhhhhcCeEEecCCCceeccc
Confidence 001100000112333332 338999999999 446777888888654 3
Q ss_pred eEEEEecChhHHH--HhhhcCHHHHcccceEEeeCCCHHHHH----HHHHhhhhhhhcccCCCCCHHHH
Q psy14500 161 LHCIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHGVEITDPAI 223 (938)
Q Consensus 161 i~vI~~tn~~~~~--~~~~ld~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~~~i~~~~l 223 (938)
+++|++|+.+--. ..-...+.|..|+..+.+..|+..+|. .++++++.++....+..++++++
T Consensus 364 vRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~ 432 (538)
T PRK15424 364 VRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALR 432 (538)
T ss_pred eEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 5799998875311 111244567778887666666665554 44556655533333344444443
No 383
>KOG0743|consensus
Probab=99.15 E-value=2.5e-10 Score=123.83 Aligned_cols=152 Identities=20% Similarity=0.364 Sum_probs=106.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHH-HhCCCEEEEEcc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV-RRKPYSLILLDE 537 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~-~~~~~~vl~lDE 537 (938)
.+||+||||||||++..|||+.| +..+.-+++++...... +...+ ...+.+||+|++
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~d-------------------Lr~LL~~t~~kSIivIED 294 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDSD-------------------LRHLLLATPNKSILLIED 294 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCcHH-------------------HHHHHHhCCCCcEEEEee
Confidence 49999999999999999999999 77788778777655433 33334 344568999999
Q ss_pred ccccC------------------HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHH
Q psy14500 538 IEKAN------------------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAV 599 (938)
Q Consensus 538 id~~~------------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~ 599 (938)
||..- +-.+..||..+|. .-. + .-..-|||+|||.
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG-lwS-s-----cg~ERIivFTTNh-------------------- 347 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG-LWS-S-----CGDERIIVFTTNH-------------------- 347 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhcc-ccc-c-----CCCceEEEEecCC--------------------
Confidence 98541 1245778888873 211 1 1134688999996
Q ss_pred HHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHH-----HHHHHHccCCeEEEcH-HHHHHHHh
Q psy14500 600 MNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI-----LKNKLLKMNMDLKISK-AALKKISN 663 (938)
Q Consensus 600 ~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~-----~~~~~~~~~~~l~~~~-~~~~~L~~ 663 (938)
..+++|+|+. |+|.+|.+.--+.+.+..++.+++.. +...+.+.-....+++ ++.+.|..
T Consensus 348 ----~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~ 415 (457)
T KOG0743|consen 348 ----KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMK 415 (457)
T ss_pred ----hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhh
Confidence 4568999997 99999999999999999998877643 2333333212244555 44555544
No 384
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.15 E-value=4.8e-10 Score=108.53 Aligned_cols=150 Identities=23% Similarity=0.356 Sum_probs=99.8
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCC
Q psy14500 431 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP 510 (938)
Q Consensus 431 Gq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 510 (938)
|++..+..+...+.... ..+++++||||||||++++.+++.+...+.+++.+++.............+..
T Consensus 2 ~~~~~~~~i~~~~~~~~---------~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 2 GQEEAIEALREALELPP---------PKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred chHHHHHHHHHHHhCCC---------CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 56666777777765321 13799999999999999999999986667788888887765543222111100
Q ss_pred CCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcc
Q psy14500 511 GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 590 (938)
Q Consensus 511 ~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~ 590 (938)
..............++|++||++.+.+.....++..++...... ....++.+|+++|....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~-------- 132 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCcccc--------
Confidence 00011122234456899999999998888889998888632110 12356778888886442
Q ss_pred hHHHHHHHHHHHHhhccChHHhhcCCeEEEccC
Q psy14500 591 DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRY 623 (938)
Q Consensus 591 ~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~ 623 (938)
..+.+.+.+|++..+.++|
T Consensus 133 --------------~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 133 --------------GDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred --------------CCcChhHHhhhccEeecCC
Confidence 1356788899987777664
No 385
>KOG0740|consensus
Probab=99.15 E-value=2.4e-10 Score=125.16 Aligned_cols=198 Identities=17% Similarity=0.220 Sum_probs=132.0
Q ss_pred HhhccccChHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh
Q psy14500 424 LLCKRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH 500 (938)
Q Consensus 424 ~l~~~viGq~~~~~~l~~~l~~~~~---~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~ 500 (938)
.....+-|.+.+.+.+...+..... .+..-+.|...+|+.||||+|||+|+++||.++ +..|..+..+.+++.
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~---~atff~iSassLtsK- 225 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES---GATFFNISASSLTSK- 225 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh---cceEeeccHHHhhhh-
Confidence 3456777888888777777643321 111122333479999999999999999999988 677777777776653
Q ss_pred hhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEcccccc-----------CHHHHHHHHHhhcCCceecCCCceee
Q psy14500 501 SISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRTIN 567 (938)
Q Consensus 501 ~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~ 567 (938)
|+|..+. +.++...+...++|+|+||||++ ++.....+|--++.+ .. ..
T Consensus 226 -----------~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~-~s------~~ 287 (428)
T KOG0740|consen 226 -----------YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGK-NS------AP 287 (428)
T ss_pred -----------ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccc-cC------CC
Confidence 6676643 55666678888899999999864 233333333333321 11 12
Q ss_pred cCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHcc
Q psy14500 568 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 647 (938)
Q Consensus 568 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~ 647 (938)
..++++|.|||.+.+ ++..++.|+..++.++.++.+....++...+.+.
T Consensus 288 ~drvlvigaTN~P~e------------------------~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~------- 336 (428)
T KOG0740|consen 288 DDRVLVIGATNRPWE------------------------LDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ------- 336 (428)
T ss_pred CCeEEEEecCCCchH------------------------HHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC-------
Confidence 236788999998664 4456777888888999999999999977666542
Q ss_pred CCeEEEcHHHHHHHHhhcccccccccccccc
Q psy14500 648 NMDLKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 648 ~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
+ -.+.+.-+..|++ ....|+-+||..+
T Consensus 337 ~--~~l~~~d~~~l~~--~Tegysgsdi~~l 363 (428)
T KOG0740|consen 337 P--NGLSDLDISLLAK--VTEGYSGSDITAL 363 (428)
T ss_pred C--CCccHHHHHHHHH--HhcCcccccHHHH
Confidence 1 3355566667766 2344666777665
No 386
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.15 E-value=1.4e-10 Score=129.08 Aligned_cols=182 Identities=15% Similarity=0.235 Sum_probs=124.4
Q ss_pred CCCCCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC----
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---- 101 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~---- 101 (938)
....++||++..++++...+.+ .+..+|||+|++||||..+|++|++...+. +.+++.+||+.+-..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~-------~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRA-------KGPFIAVNCAAIPENLLES 210 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCccc-------CCCceeeecccCCHHHHHH
Confidence 3678999999999998887764 666789999999999999999999987665 456777777544210
Q ss_pred -------ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ce
Q psy14500 102 -------TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------EL 161 (938)
Q Consensus 102 -------~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i 161 (938)
+.+.|... .-...|+.|. +..||||||..| +.+++..|+.+++.+ ++
T Consensus 211 ELFGhekGAFTGA~~-~r~G~fE~A~----GGTLfLDEI~~m--------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdv 277 (464)
T COG2204 211 ELFGHEKGAFTGAIT-RRIGRFEQAN----GGTLFLDEIGEM--------PLELQVKLLRVLQEREFERVGGNKPIKVDV 277 (464)
T ss_pred HhhcccccCcCCccc-ccCcceeEcC----CceEEeeccccC--------CHHHHHHHHHHHHcCeeEecCCCcccceee
Confidence 11122221 1122333432 338999999999 567888999988643 57
Q ss_pred EEEEecChhHHHH--hhhcCHHHHcccceEEeeCCCHHHHH----HHHHhhhhhhhcccC---CCCCHHHHHHHHHh
Q psy14500 162 HCIGATTLNEYRQ--YIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG---VEITDPAIVAASEL 229 (938)
Q Consensus 162 ~vI~~tn~~~~~~--~~~ld~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 229 (938)
++|++||.+-... .-..-+.|..|+.++.+..|+..+|. .++++++.++....+ ..++++++..+..+
T Consensus 278 RiIaaT~~dL~~~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y 354 (464)
T COG2204 278 RIIAATNRDLEEEVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAY 354 (464)
T ss_pred EEEeecCcCHHHHHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 8999999764211 11244667779998777777665554 556777776655443 45777777665443
No 387
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.14 E-value=3e-10 Score=131.36 Aligned_cols=179 Identities=14% Similarity=0.208 Sum_probs=115.5
Q ss_pred CCCCCccccHHHHHHHHHHHh--cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC----
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---- 101 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~--~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~---- 101 (938)
..|++++|++..++++...+. .....+|||+|++||||+++|++++...... +.+++.+||..+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~-------~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGRR-------DFPFVAINCGAIAESLLEA 281 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCcC-------CCCEEEeccccCChhHHHH
Confidence 568899999999998888765 4566799999999999999999999865333 567888888654310
Q ss_pred -------ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ce
Q psy14500 102 -------TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------EL 161 (938)
Q Consensus 102 -------~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i 161 (938)
+.+.|........+|+.+. ...|||||++.| +.+.+..|+.+++.+ ++
T Consensus 282 eLFG~~~gaftga~~~~~~Gl~e~A~----gGTLfLdeI~~L--------p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dv 349 (526)
T TIGR02329 282 ELFGYEEGAFTGARRGGRTGLIEAAH----RGTLFLDEIGEM--------PLPLQTRLLRVLEEREVVRVGGTEPVPVDV 349 (526)
T ss_pred HhcCCcccccccccccccccchhhcC----CceEEecChHhC--------CHHHHHHHHHHHhcCcEEecCCCceeeecc
Confidence 0011110000122333332 337999999999 446777888888654 34
Q ss_pred EEEEecChhHHH--HhhhcCHHHHcccceEEeeCCCHHHH----HHHHHhhhhhhhcccCCCCCHHHHHH
Q psy14500 162 HCIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEET----ISILRGLQKKYEVHHGVEITDPAIVA 225 (938)
Q Consensus 162 ~vI~~tn~~~~~--~~~~ld~al~~Rf~~i~~~~p~~~e~----~~il~~~~~~~~~~~~~~i~~~~l~~ 225 (938)
++|++|+.+--. ..-.+.+.|..|+..+.+..|+..+| ..++++++.++....++.++++++..
T Consensus 350 RiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 350 RVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred eEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 799998875311 11134456677887666666655554 45566666665444455566666544
No 388
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.13 E-value=1.3e-09 Score=114.07 Aligned_cols=217 Identities=18% Similarity=0.244 Sum_probs=140.1
Q ss_pred CCccccHHH---HHHHHHHHh---cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh-----
Q psy14500 31 DPVIGRDDE---IRRAIQVLQ---RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL----- 99 (938)
Q Consensus 31 ~~lvG~~~~---~~~l~~~l~---~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~----- 99 (938)
+.-||...+ ++.|...+. +.+++|+||+|++|.|||++++.+++..+....+ ....++++.+.+-.--
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~-~~~~~PVv~vq~P~~p~~~~~ 112 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE-DAERIPVVYVQMPPEPDERRF 112 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC-CCccccEEEEecCCCCChHHH
Confidence 355776543 444444443 5667899999999999999999999865432211 1223466665542110
Q ss_pred -------cCccc--cchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChh
Q psy14500 100 -------AGTKY--RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN 170 (938)
Q Consensus 100 -------~~~~~--~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~ 170 (938)
-+..+ ..... .+......+.+.-+..+|+|||+|.+..... ....++.|.|+.+-+.-.+.+|+..+..
T Consensus 113 Y~~IL~~lgaP~~~~~~~~-~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~-~~qr~~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 113 YSAILEALGAPYRPRDRVA-KLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY-RKQREFLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHhCcccCCCCCHH-HHHHHHHHHHHHcCCcEEEeechHHHhcccH-HHHHHHHHHHHHHhhccCCCeEEeccHH
Confidence 00111 11111 1222221222223356999999999754321 1123467778877777788999999888
Q ss_pred HHHHhhhcCHHHHcccceEEeeCCCH-HHHHHHHHhhhhhhhcccCCCCCH-HHHHHHHHhhhhccccCCCchhhhhHHH
Q psy14500 171 EYRQYIEKDAAFERRFQKILVEEPDI-EETISILRGLQKKYEVHHGVEITD-PAIVAASELSYRYISDRFMPDKAIDLID 248 (938)
Q Consensus 171 ~~~~~~~ld~al~~Rf~~i~~~~p~~-~e~~~il~~~~~~~~~~~~~~i~~-~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 248 (938)
.+. .+.-|+.+.+||..+.++.... ++-..++..+-..+.+.....+.+ +....+..+|+|.+ +....++.
T Consensus 191 A~~-al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i------G~l~~ll~ 263 (302)
T PF05621_consen 191 AYR-ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI------GELSRLLN 263 (302)
T ss_pred HHH-HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch------HHHHHHHH
Confidence 765 5678999999999999888754 345567777777666665555655 44578899999988 88999999
Q ss_pred HHHHHHHHh
Q psy14500 249 EAAAKIKIE 257 (938)
Q Consensus 249 ~a~~~~~~~ 257 (938)
.|+..+..+
T Consensus 264 ~aA~~AI~s 272 (302)
T PF05621_consen 264 AAAIAAIRS 272 (302)
T ss_pred HHHHHHHhc
Confidence 888766543
No 389
>PHA02244 ATPase-like protein
Probab=99.13 E-value=3.9e-10 Score=121.52 Aligned_cols=139 Identities=19% Similarity=0.287 Sum_probs=88.1
Q ss_pred ccccHHHHH----HHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh--hhh-cCc-cc
Q psy14500 33 VIGRDDEIR----RAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA--LLL-AGT-KY 104 (938)
Q Consensus 33 lvG~~~~~~----~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~--~l~-~~~-~~ 104 (938)
.+|....+. .+..++. ...+|||+||||||||++|+++|..+ +.+++.++.. .+. .+. ..
T Consensus 98 ~ig~sp~~~~~~~ri~r~l~--~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~ 165 (383)
T PHA02244 98 KIASNPTFHYETADIAKIVN--ANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDA 165 (383)
T ss_pred ccCCCHHHHHHHHHHHHHHh--cCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhcccccc
Confidence 356555543 3333433 34689999999999999999999987 6677766631 110 000 00
Q ss_pred cchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc-------------CCceEEEEecChhH
Q psy14500 105 RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-------------RGELHCIGATTLNE 171 (938)
Q Consensus 105 ~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~-------------~~~i~vI~~tn~~~ 171 (938)
.|.+. -..++..+. . +.+|+|||++.+.+ +++..|...++ ..++++|+|+|+..
T Consensus 166 ~g~~~--dgpLl~A~~-~--GgvLiLDEId~a~p--------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~ 232 (383)
T PHA02244 166 NGKFH--ETPFYEAFK-K--GGLFFIDEIDASIP--------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLG 232 (383)
T ss_pred ccccc--chHHHHHhh-c--CCEEEEeCcCcCCH--------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCc
Confidence 11111 113333333 2 34999999998843 44445555553 35689999999842
Q ss_pred ------HHHhhhcCHHHHcccceEEeeCCCH
Q psy14500 172 ------YRQYIEKDAAFERRFQKILVEEPDI 196 (938)
Q Consensus 172 ------~~~~~~ld~al~~Rf~~i~~~~p~~ 196 (938)
|.....+++++++||..|+|..|+.
T Consensus 233 ~G~~~~y~G~k~L~~AllDRFv~I~~dyp~~ 263 (383)
T PHA02244 233 KGADHIYVARNKIDGATLDRFAPIEFDYDEK 263 (383)
T ss_pred cCcccccCCCcccCHHHHhhcEEeeCCCCcH
Confidence 1112478999999999899999974
No 390
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.13 E-value=5.8e-09 Score=108.86 Aligned_cols=114 Identities=22% Similarity=0.198 Sum_probs=84.0
Q ss_pred CeEEEEeCccccccCCCCCCccchhhhhhhhccCC-ceEEEEecChhH-------HHHhhhcCHHHHcccceEEeeCCCH
Q psy14500 125 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLNE-------YRQYIEKDAAFERRFQKILVEEPDI 196 (938)
Q Consensus 125 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-~i~vI~~tn~~~-------~~~~~~ld~al~~Rf~~i~~~~p~~ 196 (938)
|.||||||+|.| +.+....|...|++. .-++|.+||+-- +..-+.++..|++|+-.|...+++.
T Consensus 292 pGVLFIDEvHmL--------DIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHML--------DIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSR 363 (450)
T ss_pred cceEEEechhhh--------hHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCH
Confidence 569999999999 456777788888753 346677777421 2223468899999999999999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHH
Q psy14500 197 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 197 ~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 255 (938)
++...|++.-+.. .++.++++|++.++.+... ..=+.++++|.-+...+.
T Consensus 364 ~EireIi~iRa~e----e~i~l~~~Ale~L~~ig~e-----tSLRYa~qLL~pa~iiA~ 413 (450)
T COG1224 364 EEIREIIRIRAKE----EDIELSDDALEYLTDIGEE-----TSLRYAVQLLTPASIIAK 413 (450)
T ss_pred HHHHHHHHHhhhh----hccccCHHHHHHHHhhchh-----hhHHHHHHhccHHHHHHH
Confidence 9999999865554 6899999999999887432 122666777765544443
No 391
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.13 E-value=9.5e-11 Score=127.73 Aligned_cols=181 Identities=20% Similarity=0.312 Sum_probs=122.5
Q ss_pred CCCCccccHHHHHHHHHHHh--cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC---cc
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---TK 103 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~--~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~---~~ 103 (938)
.+.++||++.++.++++.+. ..+..+|||.|++||||..+|++|++...+. +.+++.+||+.+-.+ +.
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~-------~kPfV~~NCAAlPesLlESE 293 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRR-------DKPFVKLNCAALPESLLESE 293 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCccc-------CCCceeeeccccchHHHHHH
Confidence 67899999999999998665 4667899999999999999999999988665 456777777654311 00
Q ss_pred ccchHHHHHHHHHHHHHhc-------CCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceEE
Q psy14500 104 YRGEFEDRLKKILKEISNN-------QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHC 163 (938)
Q Consensus 104 ~~g~~~~~l~~~~~~a~~~-------~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~v 163 (938)
..| ..+..|.-|... ..+.-||+|||..| +..++..|+.++..+ +|++
T Consensus 294 LFG----HeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel--------PL~lQaKLLRvLQegEieRvG~~r~ikVDVRi 361 (550)
T COG3604 294 LFG----HEKGAFTGAINTRRGRFELADGGTLFLDEIGEL--------PLALQAKLLRVLQEGEIERVGGDRTIKVDVRV 361 (550)
T ss_pred Hhc----ccccccccchhccCcceeecCCCeEechhhccC--------CHHHHHHHHHHHhhcceeecCCCceeEEEEEE
Confidence 000 011222222110 11237999999998 457888999998654 4789
Q ss_pred EEecChhHHHHhh---hcCHHHHcccceEEeeCCCHHHHH----HHHHhhhhhhhcccC---CCCCHHHHHHHHHh
Q psy14500 164 IGATTLNEYRQYI---EKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG---VEITDPAIVAASEL 229 (938)
Q Consensus 164 I~~tn~~~~~~~~---~ld~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 229 (938)
|+|||++- .+.. +.-..|.-|+.++.+..|+..+|. -+..++++++....| +.+++++++.+..+
T Consensus 362 IAATNRDL-~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y 436 (550)
T COG3604 362 IAATNRDL-EEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSY 436 (550)
T ss_pred EeccchhH-HHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcC
Confidence 99999863 2111 122445558887777777665554 445777777665444 56888888777654
No 392
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.12 E-value=6.5e-10 Score=130.07 Aligned_cols=181 Identities=17% Similarity=0.228 Sum_probs=118.8
Q ss_pred CCCCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC-----
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG----- 101 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~----- 101 (938)
.+..+||++..++++...+.+ ....+|||+|++||||+++|++++...... +.+++.+||..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~-------~~p~v~v~c~~~~~~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPRA-------DKPLVYLNCAALPESLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCcC-------CCCeEEEEcccCChHHHHHH
Confidence 678999999999888887763 566789999999999999999999876433 557888888655310
Q ss_pred ------ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceE
Q psy14500 102 ------TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELH 162 (938)
Q Consensus 102 ------~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~ 162 (938)
+.+.|... .-...+..+ + +..|||||++.|. .+.+..|..+++.+ +++
T Consensus 258 lfG~~~g~~~ga~~-~~~g~~~~a---~-gGtL~ldeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 258 LFGHVKGAFTGAIS-NRSGKFELA---D-GGTLFLDEIGELP--------LALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred hcCccccccCCCcc-cCCcchhhc---C-CCEEEecChhhCC--------HHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 00001000 001123222 1 3379999999993 46677787777543 468
Q ss_pred EEEecChhHHH--HhhhcCHHHHcccceEEeeCCCHHHHH----HHHHhhhhhhhccc---CCCCCHHHHHHHHHh
Q psy14500 163 CIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHH---GVEITDPAIVAASEL 229 (938)
Q Consensus 163 vI~~tn~~~~~--~~~~ld~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~---~~~i~~~~l~~~~~~ 229 (938)
+|++|+.+-.. ..-.+.+.|..|+..+.+..|+..+|. .++++++.++.... .+.++++++..+..+
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y 400 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAY 400 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 99999875311 122366788889987666666555544 55566666654432 356777777766554
No 393
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.11 E-value=1.2e-09 Score=132.97 Aligned_cols=196 Identities=18% Similarity=0.294 Sum_probs=123.0
Q ss_pred HHHHHhhhHHHHHhc--CCCCCccccHHHHHHHHHHHh--cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14500 13 YLKKYTIDLTEKARL--GKLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 88 (938)
Q Consensus 13 ~~~~~~~~l~~~~~~--~~~~~lvG~~~~~~~l~~~l~--~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~ 88 (938)
.++.-...+++.... .+|++++|++..++.+.+.+. .....+|||+||+|||||++|++++...... +.
T Consensus 356 ~L~~e~~~lt~~L~~~n~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~-------~~ 428 (686)
T PRK15429 356 RLVDENLALTEQLNNVDSEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGRN-------NR 428 (686)
T ss_pred hhhhHHHHHHHhhhhccccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCCC-------CC
Confidence 344433445555443 578899999999998877655 3556789999999999999999999876332 56
Q ss_pred eEEEEehhhhhcC---c--------cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc
Q psy14500 89 KILLLDIALLLAG---T--------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS 157 (938)
Q Consensus 89 ~~~~~~~~~l~~~---~--------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~ 157 (938)
+++.++|..+... . .+.|..... ...+..+. +.+|||||++.| +.+.+..|...++
T Consensus 429 ~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~-~g~le~a~----~GtL~Ldei~~L--------~~~~Q~~L~~~l~ 495 (686)
T PRK15429 429 RMVKMNCAAMPAGLLESDLFGHERGAFTGASAQR-IGRFELAD----KSSLFLDEVGDM--------PLELQPKLLRVLQ 495 (686)
T ss_pred CeEEEecccCChhHhhhhhcCcccccccccccch-hhHHHhcC----CCeEEEechhhC--------CHHHHHHHHHHHH
Confidence 7888888654311 0 011111111 12232222 348999999999 3466777777774
Q ss_pred CC-------------ceEEEEecChhHHH--HhhhcCHHHHcccceEEeeCCCHHHHH----HHHHhhhhhhhcccC---
Q psy14500 158 RG-------------ELHCIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG--- 215 (938)
Q Consensus 158 ~~-------------~i~vI~~tn~~~~~--~~~~ld~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~--- 215 (938)
.+ ++++|++|+.+-.. ..-.+.+.+..|+..+.+..|+..+|. .++++++.++....+
T Consensus 496 ~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~ 575 (686)
T PRK15429 496 EQEFERLGSNKIIQTDVRLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNI 575 (686)
T ss_pred hCCEEeCCCCCcccceEEEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCC
Confidence 32 46899999875311 122355667778887777777666665 455666655443333
Q ss_pred CCCCHHHHHHHHH
Q psy14500 216 VEITDPAIVAASE 228 (938)
Q Consensus 216 ~~i~~~~l~~~~~ 228 (938)
..++++++..+..
T Consensus 576 ~~~s~~al~~L~~ 588 (686)
T PRK15429 576 DSIPAETLRTLSN 588 (686)
T ss_pred CCcCHHHHHHHHh
Confidence 2366666655543
No 394
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.11 E-value=1.7e-09 Score=118.45 Aligned_cols=179 Identities=15% Similarity=0.163 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCC---C-----------cCCCeEEEEehhhhhcC
Q psy14500 37 DDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN---S-----------LLSKKILLLDIALLLAG 101 (938)
Q Consensus 37 ~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~---~-----------~~~~~~~~~~~~~l~~~ 101 (938)
+...+++...+.+.+.+| .||+||+|+||+++|.++|+.+.+..... . ..-.+++.+.... +
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~ 84 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---G 84 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---c
Confidence 456778888887766666 56889999999999999999987632110 0 0011233332210 0
Q ss_pred ccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhHHHHhh
Q psy14500 102 TKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYI 176 (938)
Q Consensus 102 ~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~~~~~~ 176 (938)
.... ....++.+.+.+.. .++..|+|||++|.|. .+++|.|+..||. ++.++|.+|+.++
T Consensus 85 ~~~I--~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~----- 149 (334)
T PRK07993 85 KSSL--GVDAVREVTEKLYEHARLGGAKVVWLPDAALLT--------DAAANALLKTLEEPPENTWFFLACREPA----- 149 (334)
T ss_pred cccC--CHHHHHHHHHHHhhccccCCceEEEEcchHhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----
Confidence 0001 12245555555542 2345699999999993 4788999999986 4688888888887
Q ss_pred hcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHH
Q psy14500 177 EKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 248 (938)
Q Consensus 177 ~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 248 (938)
.+.|+++|||..+.|++|+.++....|.. ...++++....++.++++.. .+|.++++
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~---------~~~~~~~~a~~~~~la~G~~------~~Al~l~~ 206 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSR---------EVTMSQDALLAALRLSAGAP------GAALALLQ 206 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHH---------ccCCCHHHHHHHHHHcCCCH------HHHHHHhc
Confidence 89999999999999999999888777652 11355666667777776654 66666654
No 395
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.10 E-value=7.3e-10 Score=119.66 Aligned_cols=181 Identities=17% Similarity=0.278 Sum_probs=117.8
Q ss_pred HhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEE---eccccccch-
Q psy14500 424 LLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR---IDMSEFIEK- 499 (938)
Q Consensus 424 ~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~---~~~~~~~~~- 499 (938)
.++.-++||+..+..+....-.... +.+|+.|+.|||||+++|+||..|-. ...+. ++|.-....
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~i---------ggvLI~G~kGtaKSt~~Rala~LLp~--~~~V~gc~f~cdP~~P~~ 82 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQI---------GGALIAGEKGTAKSTLARALADLLPE--IEVVIGCPFNCDPDDPEE 82 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccccc---------ceeEEecCCCccHHHHHHHHHHhCCc--cceecCCCCCCCCCChhh
Confidence 4567789999998887765433332 37999999999999999999999821 11111 111111000
Q ss_pred --h-hh---------------hhhcCCCCC-----Cccc---------cccchhHHHHHhCCCEEEEEccccccCHHHHH
Q psy14500 500 --H-SI---------------SRLIGAPPG-----YIGY---------EEGGYLTEIVRRKPYSLILLDEIEKANSDVFN 547 (938)
Q Consensus 500 --~-~~---------------~~l~g~~~~-----~~g~---------~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~ 547 (938)
+ .. ..+.+.+.+ .+|. .....-.+.+.++..+|||+||+..++..+++
T Consensus 83 ~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lvd 162 (423)
T COG1239 83 MCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLVD 162 (423)
T ss_pred hhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHHH
Confidence 0 00 011111111 1121 11111224566788899999999999999999
Q ss_pred HHHHhhcCCc-eecCCCceeec-CCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCC
Q psy14500 548 ILLQILDDGR-LTDNRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN 625 (938)
Q Consensus 548 ~Ll~~le~g~-~~~~~g~~~~~-~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~ 625 (938)
.||.++++|. .....|..+.. .++++|.|.|.. .+.++|.|++||...|...+++
T Consensus 163 ~LLd~aaeG~n~vereGisi~hpa~fvligTmNPE-----------------------eGeLrpqLlDRfg~~v~~~~~~ 219 (423)
T COG1239 163 ALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPE-----------------------EGELRPQLLDRFGLEVDTHYPL 219 (423)
T ss_pred HHHHHHHhCCceeeeCceeeccCccEEEEeecCcc-----------------------ccccchhhHhhhcceeeccCCC
Confidence 9999999984 33445766654 678888999964 2457899999998877777665
Q ss_pred -HHHHHHHHHHHHH
Q psy14500 626 -RKNILSIANIQLN 638 (938)
Q Consensus 626 -~e~~~~i~~~~l~ 638 (938)
.++..+|+.+.+.
T Consensus 220 ~~~~rv~Ii~r~~~ 233 (423)
T COG1239 220 DLEERVEIIRRRLA 233 (423)
T ss_pred CHHHHHHHHHHHHH
Confidence 4677777666554
No 396
>KOG0651|consensus
Probab=99.09 E-value=4.5e-10 Score=114.87 Aligned_cols=154 Identities=21% Similarity=0.388 Sum_probs=101.1
Q ss_pred ccccChHHHHHHHHHHHHhhhc----CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRS----GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 502 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~----~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 502 (938)
+.+-|-...+..+.+.+...-. ...-.-+|+..++||||||+|||.+|+++|..+ +.+|+.+-.+++.+.
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv~k--- 205 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALVDK--- 205 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhhhh---
Confidence 3455666666666665543211 111011333368999999999999999999998 788888777776543
Q ss_pred hhhcCCCCCCccccccchhHHHH---HhCCCEEEEEcccccc-----------CHHHHHHHHHhhcCCceecCCCceeec
Q psy14500 503 SRLIGAPPGYIGYEEGGYLTEIV---RRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRTINF 568 (938)
Q Consensus 503 ~~l~g~~~~~~g~~~~~~l~~~~---~~~~~~vl~lDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~ 568 (938)
|+|+.. +.+++.+ ++..+||+|+||||.. +..+|.+|..+++.-.-.+ ..
T Consensus 206 ---------yiGEsa-RlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd------~l 269 (388)
T KOG0651|consen 206 ---------YIGESA-RLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD------TL 269 (388)
T ss_pred ---------hcccHH-HHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch------hc
Confidence 666543 3444443 4455799999999854 4678899988887311011 23
Q ss_pred CCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCH
Q psy14500 569 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNR 626 (938)
Q Consensus 569 ~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~ 626 (938)
.++-+|+|||.+.. +.|+|+ +|+|..+..|-+++
T Consensus 270 ~rVk~ImatNrpdt------------------------LdpaLlRpGRldrk~~iPlpne 305 (388)
T KOG0651|consen 270 HRVKTIMATNRPDT------------------------LDPALLRPGRLDRKVEIPLPNE 305 (388)
T ss_pred ccccEEEecCCccc------------------------cchhhcCCccccceeccCCcch
Confidence 45679999997553 556666 68887777775554
No 397
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.09 E-value=1.1e-09 Score=127.84 Aligned_cols=199 Identities=12% Similarity=0.104 Sum_probs=123.0
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhhhcC-CC--CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEe---
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSG-LS--DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI--- 491 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~-~~--~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~--- 491 (938)
...+.+.+...++|++.++..+.-.+-..... .. ..-+...++||+|+||||||++|+++++.+.+. .+...
T Consensus 194 ~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~--~~~~~~~~ 271 (509)
T smart00350 194 YERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA--VYTTGKGS 271 (509)
T ss_pred HHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc--eEcCCCCC
Confidence 45677788889999999988887777432210 00 111223389999999999999999999987321 22221
Q ss_pred ccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecC-CCcee-ecC
Q psy14500 492 DMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDN-RGRTI-NFR 569 (938)
Q Consensus 492 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~-~g~~~-~~~ 569 (938)
++..+... .+..+ ..|. ...-.+.+..+.+++++|||++++++..|..|+.+|+++.++.. .|... -..
T Consensus 272 ~~~~l~~~-----~~~~~--~~g~--~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~ 342 (509)
T smart00350 272 SAVGLTAA-----VTRDP--ETRE--FTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNA 342 (509)
T ss_pred CcCCcccc-----ceEcc--Ccce--EEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecC
Confidence 11111110 00000 0011 00111234456789999999999999999999999999887643 24333 346
Q ss_pred CeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEE-EccCCCHHHHHHHHHHHHH
Q psy14500 570 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDII-VFRYLNRKNILSIANIQLN 638 (938)
Q Consensus 570 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i-~f~~l~~e~~~~i~~~~l~ 638 (938)
++.+|+|+|.-...+... ..+.. .-.+++++++|||.++ ...+++.+.-.+|+.+.+.
T Consensus 343 ~~~viAa~NP~~g~y~~~---------~~~~~--n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 343 RCSVLAAANPIGGRYDPK---------LTPEE--NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CcEEEEEeCCCCcccCCC---------cChhh--ccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 788999999632211000 00000 1148999999999854 4467777777778776654
No 398
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.09 E-value=6.6e-10 Score=107.56 Aligned_cols=145 Identities=25% Similarity=0.384 Sum_probs=90.7
Q ss_pred cccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHH
Q psy14500 34 IGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLK 113 (938)
Q Consensus 34 vG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~ 113 (938)
+|++..+..+...+......+++++||||||||++++.+++.+... +..++.+++..................
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~-------~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP-------GAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcC-------CCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 4788889999998888777899999999999999999999987422 456777776554422211110000001
Q ss_pred HHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc----CCceEEEEecChhHHHHhhhcCHHHHcccc-e
Q psy14500 114 KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFERRFQ-K 188 (938)
Q Consensus 114 ~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~----~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~-~ 188 (938)
...........+.+|+|||++.+.... .......+..... ...+.+|++++.... ..+++.+.+||. .
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~ 146 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRGA----QNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIR 146 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHHH----HHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccE
Confidence 111122223456799999999872211 1122222333322 357889999887752 356788999995 3
Q ss_pred EEee
Q psy14500 189 ILVE 192 (938)
Q Consensus 189 i~~~ 192 (938)
+.++
T Consensus 147 i~~~ 150 (151)
T cd00009 147 IVIP 150 (151)
T ss_pred eecC
Confidence 6554
No 399
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.09 E-value=3.4e-09 Score=114.68 Aligned_cols=150 Identities=15% Similarity=0.219 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCC---C-----------cCCCeEEEEehhhhhcC
Q psy14500 37 DDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN---S-----------LLSKKILLLDIALLLAG 101 (938)
Q Consensus 37 ~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~---~-----------~~~~~~~~~~~~~l~~~ 101 (938)
....+.+...+.+++.+| .||+||+|+||+++|+++|+.+.+..... . ..-..++.+... .
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~- 83 (325)
T PRK06871 8 QPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---D- 83 (325)
T ss_pred HHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---c-
Confidence 345667777777766665 56899999999999999999987643110 0 000123323221 0
Q ss_pred ccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhHHHHhh
Q psy14500 102 TKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYI 176 (938)
Q Consensus 102 ~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~~~~~~ 176 (938)
++.. ....++.+.+.+. ..++..|++||++|.|. ..++|.|+..||. ..+.+|.+|+.++
T Consensus 84 ~~~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~--------~~AaNaLLKtLEEPp~~~~fiL~t~~~~----- 148 (325)
T PRK06871 84 NKDI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERLT--------EAAANALLKTLEEPRPNTYFLLQADLSA----- 148 (325)
T ss_pred CCCC--CHHHHHHHHHHHhhccccCCceEEEEechhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChH-----
Confidence 1111 1224566655554 22345699999999993 4688999999986 4678888888887
Q ss_pred hcCHHHHcccceEEeeCCCHHHHHHHHHh
Q psy14500 177 EKDAAFERRFQKILVEEPDIEETISILRG 205 (938)
Q Consensus 177 ~ld~al~~Rf~~i~~~~p~~~e~~~il~~ 205 (938)
.+.|+++|||..+.|++|+.++....|..
T Consensus 149 ~llpTI~SRC~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 149 ALLPTIYSRCQTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred hCchHHHhhceEEeCCCCCHHHHHHHHHH
Confidence 89999999999999999999988877764
No 400
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.08 E-value=3.5e-10 Score=129.14 Aligned_cols=170 Identities=16% Similarity=0.243 Sum_probs=110.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhcc--CCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEE
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFN--NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 535 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 535 (938)
.+++|+||||+|||+|++++++.+.. .+..+.++++.++....... + .. .....+....+ ....+|+|
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~-~-~~-------~~~~~f~~~~~-~~~dvLlI 200 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDS-M-KE-------GKLNEFREKYR-KKVDVLLI 200 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH-H-hc-------ccHHHHHHHHH-hcCCEEEE
Confidence 36999999999999999999998743 24567777877665432111 1 00 01112222222 23469999
Q ss_pred ccccccC--HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh
Q psy14500 536 DEIEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN 613 (938)
Q Consensus 536 DEid~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 613 (938)
||++.+. ...+..|+..++.- ...+..+|+||+..+..+. .+.+.+.+
T Consensus 201 DDi~~l~~~~~~q~elf~~~n~l----------~~~~k~iIitsd~~p~~l~--------------------~l~~rL~S 250 (440)
T PRK14088 201 DDVQFLIGKTGVQTELFHTFNEL----------HDSGKQIVICSDREPQKLS--------------------EFQDRLVS 250 (440)
T ss_pred echhhhcCcHHHHHHHHHHHHHH----------HHcCCeEEEECCCCHHHHH--------------------HHHHHHhh
Confidence 9999764 34566677766531 1112347777876555432 25567888
Q ss_pred cCC--eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccch
Q psy14500 614 RID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCK 679 (938)
Q Consensus 614 R~~--~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~ 679 (938)
||. .++.+.|++.++..+|+.+.+. ..+ +.++++++++|++.. ...+|.+.|.+
T Consensus 251 R~~~gl~v~i~~pd~e~r~~IL~~~~~-------~~~--~~l~~ev~~~Ia~~~---~~~~R~L~g~l 306 (440)
T PRK14088 251 RFQMGLVAKLEPPDEETRKKIARKMLE-------IEH--GELPEEVLNFVAENV---DDNLRRLRGAI 306 (440)
T ss_pred HHhcCceEeeCCCCHHHHHHHHHHHHH-------hcC--CCCCHHHHHHHHhcc---ccCHHHHHHHH
Confidence 884 3889999999999999765543 233 678999999999843 13467777773
No 401
>PRK09087 hypothetical protein; Validated
Probab=99.08 E-value=4.7e-10 Score=116.32 Aligned_cols=152 Identities=14% Similarity=0.190 Sum_probs=100.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
.++|+||+|+|||+|++++++.. + ...++...+... ....+ ..++|+||++
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~---~--~~~i~~~~~~~~---------------------~~~~~---~~~~l~iDDi 96 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS---D--ALLIHPNEIGSD---------------------AANAA---AEGPVLIEDI 96 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc---C--CEEecHHHcchH---------------------HHHhh---hcCeEEEECC
Confidence 59999999999999999988764 2 223333222211 11111 1248999999
Q ss_pred cccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCC--
Q psy14500 539 EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-- 616 (938)
Q Consensus 539 d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-- 616 (938)
+.+. ..+..|+.+++. +...+..+|+|++..+..+. .+.+++.+|+.
T Consensus 97 ~~~~-~~~~~lf~l~n~----------~~~~g~~ilits~~~p~~~~--------------------~~~~dL~SRl~~g 145 (226)
T PRK09087 97 DAGG-FDETGLFHLINS----------VRQAGTSLLMTSRLWPSSWN--------------------VKLPDLKSRLKAA 145 (226)
T ss_pred CCCC-CCHHHHHHHHHH----------HHhCCCeEEEECCCChHHhc--------------------cccccHHHHHhCC
Confidence 9774 235667776653 11123457788887666442 24678999995
Q ss_pred eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHH
Q psy14500 617 DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSIL 685 (938)
Q Consensus 617 ~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~ 685 (938)
.++.+.+++.+++.+++++.+.. .+ +.++++++++|+... -|++.+....+.++
T Consensus 146 l~~~l~~pd~e~~~~iL~~~~~~-------~~--~~l~~ev~~~La~~~------~r~~~~l~~~l~~L 199 (226)
T PRK09087 146 TVVEIGEPDDALLSQVIFKLFAD-------RQ--LYVDPHVVYYLVSRM------ERSLFAAQTIVDRL 199 (226)
T ss_pred ceeecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHh------hhhHHHHHHHHHHH
Confidence 49999999999999997766644 34 789999999999843 25555544434443
No 402
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.08 E-value=2.3e-09 Score=128.16 Aligned_cols=210 Identities=20% Similarity=0.236 Sum_probs=126.0
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcC----CCCCC---------------------
Q psy14500 30 LDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIING----EVPNS--------------------- 84 (938)
Q Consensus 30 ~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~----~~p~~--------------------- 84 (938)
|..||||+..+..++..+..+...+|||.||+|||||++|++|++.+..- .++..
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 67899999999888877766666889999999999999999999887310 00000
Q ss_pred cCCCeEEEEehhhhhcCccccchHHHHHHHHHHH--------HHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhc
Q psy14500 85 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKE--------ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL 156 (938)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~--------a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l 156 (938)
....+++.+.++... ....|... +...+.. ........||||||++.|. ...++.|+..|
T Consensus 83 ~~~~pfv~~p~~~t~--~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~--------~~~q~~Ll~~l 150 (633)
T TIGR02442 83 QRPVPFVNLPLGATE--DRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLLD--------DHLVDVLLDAA 150 (633)
T ss_pred cCCCCeeeCCCCCcH--HHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhCC--------HHHHHHHHHHH
Confidence 012344444332211 01112110 1111110 0001123499999999993 46778888888
Q ss_pred cCC---------------ceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCC-HHHHHHHHHhhhh----------h
Q psy14500 157 SRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPD-IEETISILRGLQK----------K 209 (938)
Q Consensus 157 ~~~---------------~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~-~~e~~~il~~~~~----------~ 209 (938)
+.+ .+.+|+|+|+.+ ..+.++|++||.. |.++.+. .+++.++++.... .
T Consensus 151 e~g~~~v~r~g~~~~~~~~~~lIat~np~e----g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~ 226 (633)
T TIGR02442 151 AMGVNRVEREGLSVSHPARFVLIGTMNPEE----GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAAR 226 (633)
T ss_pred hcCCEEEEECCceeeecCCeEEEEecCCCC----CCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHH
Confidence 765 367899988754 2578999999985 7777664 5666777654221 0
Q ss_pred ---------------hhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHHHh
Q psy14500 210 ---------------YEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIE 257 (938)
Q Consensus 210 ---------------~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~ 257 (938)
......+.++++++..++..+...- -..++..+.++.-|.+.+.+.
T Consensus 227 ~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~--i~s~Ra~i~~~r~Ara~AaL~ 287 (633)
T TIGR02442 227 WAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFG--VDGHRADIVMARAARALAALD 287 (633)
T ss_pred hhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHHHHHHc
Confidence 0112235677777777776664431 112455555555554444443
No 403
>PRK06620 hypothetical protein; Validated
Probab=99.08 E-value=1.4e-09 Score=111.76 Aligned_cols=145 Identities=21% Similarity=0.267 Sum_probs=89.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEcc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 537 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDE 537 (938)
.+++|+||||||||++++++++.. +..++ ..... .....+ ...+|+|||
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~---~~~~~--~~~~~------------------------~~~~~~--~~d~lliDd 93 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS---NAYII--KDIFF------------------------NEEILE--KYNAFIIED 93 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc---CCEEc--chhhh------------------------chhHHh--cCCEEEEec
Confidence 369999999999999999988765 22111 10000 001112 225899999
Q ss_pred ccccCHH-HHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCC
Q psy14500 538 IEKANSD-VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID 616 (938)
Q Consensus 538 id~~~~~-~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~ 616 (938)
|+.+... +...+..+.+.| ..+++|++.++..+ .+ |++.+|+.
T Consensus 94 i~~~~~~~lf~l~N~~~e~g--------------~~ilits~~~p~~l---------------------~l-~~L~SRl~ 137 (214)
T PRK06620 94 IENWQEPALLHIFNIINEKQ--------------KYLLLTSSDKSRNF---------------------TL-PDLSSRIK 137 (214)
T ss_pred cccchHHHHHHHHHHHHhcC--------------CEEEEEcCCCcccc---------------------ch-HHHHHHHh
Confidence 9976432 222222222332 24566666544322 24 78999995
Q ss_pred e--EEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHH
Q psy14500 617 D--IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSI 684 (938)
Q Consensus 617 ~--~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~ 684 (938)
. ++.+.+++.+++..++.+.+.. .+ +.++++++++|+... -||+......+++
T Consensus 138 ~gl~~~l~~pd~~~~~~~l~k~~~~-------~~--l~l~~ev~~~L~~~~------~~d~r~l~~~l~~ 192 (214)
T PRK06620 138 SVLSILLNSPDDELIKILIFKHFSI-------SS--VTISRQIIDFLLVNL------PREYSKIIEILEN 192 (214)
T ss_pred CCceEeeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHc------cCCHHHHHHHHHH
Confidence 3 8999999999988886665442 34 779999999999833 3455444333554
No 404
>KOG0745|consensus
Probab=99.08 E-value=1.4e-09 Score=115.81 Aligned_cols=170 Identities=23% Similarity=0.363 Sum_probs=115.2
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccch-HHHHHHHHHHHHH---hcCCC
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGE-FEDRLKKILKEIS---NNQKD 125 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~l~~~~~~a~---~~~~~ 125 (938)
-.++||||.||+|+|||.||+.||+.+ +.++...||..+.. ..|+|+ .+.-+..++.+|. +..+.
T Consensus 224 LeKSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQ-AGYVGeDVEsvi~KLl~~A~~nVekAQq 292 (564)
T KOG0745|consen 224 LEKSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQ-AGYVGEDVESVIQKLLQEAEYNVEKAQQ 292 (564)
T ss_pred eecccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhh-cccccccHHHHHHHHHHHccCCHHHHhc
Confidence 346899999999999999999999999 88888888887765 457775 6767788887764 12234
Q ss_pred eEEEEeCccccccCCCCC------CccchhhhhhhhccC---------------C--------ceEEEEecChhHHHH--
Q psy14500 126 IIIFIDELHTMIGTGKVE------GSIDAGNMLKPELSR---------------G--------ELHCIGATTLNEYRQ-- 174 (938)
Q Consensus 126 ~iL~iDEid~l~~~~~~~------~~~~~~~~L~~~l~~---------------~--------~i~vI~~tn~~~~~~-- 174 (938)
.|+||||+|.+.....+- +..-++..|+.++|. + +|.||+..-.....+
T Consensus 293 GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I 372 (564)
T KOG0745|consen 293 GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKII 372 (564)
T ss_pred CeEEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHH
Confidence 499999999998432211 112366777777731 1 233333221111000
Q ss_pred -------------------------------------------------hhhcCHHHHcccce-EEeeCCCHHHHHHHHH
Q psy14500 175 -------------------------------------------------YIEKDAAFERRFQK-ILVEEPDIEETISILR 204 (938)
Q Consensus 175 -------------------------------------------------~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~ 204 (938)
.+.+-|.|.-||++ +.|..++.++..++|.
T Consensus 373 ~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLt 452 (564)
T KOG0745|consen 373 SRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLT 452 (564)
T ss_pred HHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHh
Confidence 12345888889997 8899999999999883
Q ss_pred ----hhhhhhhc-----ccCCCCCHHHHHHHHHhh
Q psy14500 205 ----GLQKKYEV-----HHGVEITDPAIVAASELS 230 (938)
Q Consensus 205 ----~~~~~~~~-----~~~~~i~~~~l~~~~~~s 230 (938)
.+..+|.. ...+.+++.|+..+++++
T Consensus 453 EPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~A 487 (564)
T KOG0745|consen 453 EPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLA 487 (564)
T ss_pred cchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHH
Confidence 33333332 223567899998888876
No 405
>KOG0373|consensus
Probab=99.07 E-value=5.5e-10 Score=107.42 Aligned_cols=118 Identities=24% Similarity=0.343 Sum_probs=82.2
Q ss_pred cccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHH--
Q psy14500 667 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVL-- 740 (938)
Q Consensus 667 ~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~-- 740 (938)
.|.-..|||||.+..|..+...-+- -|...+||.||++|||-.|+++.-+++-+ +.....++||||-.-+.-.
T Consensus 46 tPVTvCGDIHGQFyDL~eLFrtgG~-vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVYG 124 (306)
T KOG0373|consen 46 TPVTVCGDIHGQFYDLLELFRTGGQ-VPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVYG 124 (306)
T ss_pred CCeeEeeccchhHHHHHHHHHhcCC-CCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhhh
Confidence 4566789999998888888876664 46789999999999999999999888877 4467889999997655432
Q ss_pred --hccccCCccccHHHhhCCCCHHHHHHHHhcCCce-EEeCCEEEEecccCcCCCH
Q psy14500 741 --ININKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYYKKYLMIHAGVAKQWTA 793 (938)
Q Consensus 741 --~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~-~~~~~~~~vHAg~~p~~~~ 793 (938)
.....+.+..+.- +-.-..+.-|++. +.++++++||||++|+...
T Consensus 125 FydECq~KYGnan~w--------kycckVFD~LtlaAiID~~vLCVHGGLSPdirt 172 (306)
T KOG0373|consen 125 FYDECQNKYGNANVW--------KYCCKVFDFLTLAAIIDEKVLCVHGGLSPDIRT 172 (306)
T ss_pred hHHHHHhhcCCchHH--------HHHHHHHhhhhHHHHhcCcEEEEcCCCCcccee
Confidence 2221111111111 1222334444554 4567899999999997543
No 406
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.07 E-value=5.7e-09 Score=105.96 Aligned_cols=178 Identities=16% Similarity=0.256 Sum_probs=116.8
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++|-+..++.+..-......| .|..++||+|+.|||||++++++...+...+..++.+.-..+..-.
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G-----~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l~------ 95 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQG-----LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDLP------ 95 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcC-----CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccHH------
Confidence 34667777788777777665544 4556899999999999999999999998778888877765554322
Q ss_pred CCCCCCccccccchhHHHHHhC-CCEEEEEcccc-ccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCC---c
Q psy14500 507 GAPPGYIGYEEGGYLTEIVRRK-PYSLILLDEIE-KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG---S 581 (938)
Q Consensus 507 g~~~~~~g~~~~~~l~~~~~~~-~~~vl~lDEid-~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~---~ 581 (938)
.+...++.. ..-|||+|+.. .........|-.+||.|.. ..+.|++|.+|||.- .
T Consensus 96 -------------~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle-------~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 96 -------------ELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLE-------ARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred -------------HHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccc-------cCCCcEEEEEecchhhccc
Confidence 233334333 35699999874 2334556778888885432 256889999999952 1
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 582 DKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
+.+.+.......++ ...+.+..++ .|.+||...+.|.|++.++..+|+...+.+
T Consensus 156 E~~~d~~~~~~~ei--h~~d~~eEkl--SLsDRFGL~l~F~~~~q~~YL~IV~~~~~~ 209 (249)
T PF05673_consen 156 ESFSDREDIQDDEI--HPSDTIEEKL--SLSDRFGLWLSFYPPDQEEYLAIVRHYAER 209 (249)
T ss_pred hhhhhccCCCcccc--CcchHHHHHH--hHHHhCCcEEEecCCCHHHHHHHHHHHHHH
Confidence 11111110000000 0111122222 478999999999999999999998877743
No 407
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.07 E-value=3.9e-09 Score=112.45 Aligned_cols=96 Identities=23% Similarity=0.196 Sum_probs=65.8
Q ss_pred CeEEEEeCccccccCCCCCCccchhhhhhhhccCC-ceEEEEecChhH-------HHHhhhcCHHHHcccceEEeeCCCH
Q psy14500 125 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLNE-------YRQYIEKDAAFERRFQKILVEEPDI 196 (938)
Q Consensus 125 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-~i~vI~~tn~~~-------~~~~~~ld~al~~Rf~~i~~~~p~~ 196 (938)
|.||||||+|.| +.+....|...+|.. .-++|.+||+-. +...+.++..|++|+-.|...+++.
T Consensus 279 pGVLFIDEvHmL--------DiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~ 350 (398)
T PF06068_consen 279 PGVLFIDEVHML--------DIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSE 350 (398)
T ss_dssp E-EEEEESGGGS--------BHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----H
T ss_pred cceEEecchhhc--------cHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCH
Confidence 469999999999 456778888888764 456777888432 2233468889999999999999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhh
Q psy14500 197 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYR 232 (938)
Q Consensus 197 ~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~ 232 (938)
++..+|++--++. +++.+++++++.+..++..
T Consensus 351 ~ei~~Il~iR~~~----E~v~i~~~al~~L~~ig~~ 382 (398)
T PF06068_consen 351 EEIKQILKIRAKE----EDVEISEDALDLLTKIGVE 382 (398)
T ss_dssp HHHHHHHHHHHHH----CT--B-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhh----hcCcCCHHHHHHHHHHhhh
Confidence 9999999876664 7899999999999887543
No 408
>KOG0732|consensus
Probab=99.06 E-value=1.4e-09 Score=129.66 Aligned_cols=192 Identities=21% Similarity=0.327 Sum_probs=122.7
Q ss_pred ccccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14500 427 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 498 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 498 (938)
..|-|.+..+..+.+.+-.. ..++..| ..+||+||||||||.+|+++|..+-..+.. +.+.+..-.+
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpP----rgvL~~GppGTGkTl~araLa~~~s~~~~k-isffmrkgaD 339 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPP----RGVLFHGPPGTGKTLMARALAAACSRGNRK-ISFFMRKGAD 339 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCC----cceeecCCCCCchhHHHHhhhhhhcccccc-cchhhhcCch
Confidence 45566666676666665322 1222222 259999999999999999999987433222 2222221111
Q ss_pred hhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCce
Q psy14500 499 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 565 (938)
Q Consensus 499 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 565 (938)
.. ..++|..+. +.+++..+...+.|+||||||-++ ..+..+||.+|+. . +
T Consensus 340 --~l-------skwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdG-l--d----- 402 (1080)
T KOG0732|consen 340 --CL-------SKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDG-L--D----- 402 (1080)
T ss_pred --hh-------ccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccC-C--C-----
Confidence 11 125665543 556666777778999999998544 4778999999984 1 1
Q ss_pred eecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHH--hhcCCeEEEccCCCHHHHHHHHHHHHHHHHHH
Q psy14500 566 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF--INRIDDIIVFRYLNRKNILSIANIQLNILKNK 643 (938)
Q Consensus 566 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l--~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~ 643 (938)
....+++|.+||.+.. +.|++ -+|||..+.|+-++.++..+|+...-..
T Consensus 403 -sRgqVvvigATnRpda------------------------~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrk---- 453 (1080)
T KOG0732|consen 403 -SRGQVVVIGATNRPDA------------------------IDPALRRPGRFDREFYFPLPDVDARAKILDIHTRK---- 453 (1080)
T ss_pred -CCCceEEEcccCCccc------------------------cchhhcCCcccceeEeeeCCchHHHHHHHHHhccC----
Confidence 2345778999997543 56777 4899999999999999988886532211
Q ss_pred HHccCCeEEEcHHHHHHHHhhcccccccccccc
Q psy14500 644 LLKMNMDLKISKAALKKISNIGFDLIYGARDVH 676 (938)
Q Consensus 644 ~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~ 676 (938)
. .-.++...+.+|+.. ...|+-.||+
T Consensus 454 ---w--~~~i~~~l~~~la~~--t~gy~gaDlk 479 (1080)
T KOG0732|consen 454 ---W--EPPISRELLLWLAEE--TSGYGGADLK 479 (1080)
T ss_pred ---C--CCCCCHHHHHHHHHh--ccccchHHHH
Confidence 1 133556666777662 2445555655
No 409
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.06 E-value=4.6e-10 Score=122.74 Aligned_cols=184 Identities=18% Similarity=0.273 Sum_probs=118.2
Q ss_pred HhcCCCCCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14500 25 ARLGKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 102 (938)
Q Consensus 25 ~~~~~~~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~ 102 (938)
.....++.+||.+..++++++.+.. +...+||++|++||||+.+|+.|+....+. .+.+++.+||+.+....
T Consensus 72 ~~~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~------~~~PFI~~NCa~~~en~ 145 (403)
T COG1221 72 LKSEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR------AEAPFIAFNCAAYSENL 145 (403)
T ss_pred ccchhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc------cCCCEEEEEHHHhCcCH
Confidence 3455788999999998888887764 555789999999999999999999544331 26688888987654321
Q ss_pred c-----------ccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC------------
Q psy14500 103 K-----------YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 159 (938)
Q Consensus 103 ~-----------~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------ 159 (938)
. +.|. ...-..+|+.|. ..+||+|||+.|. ...+..|..+++++
T Consensus 146 ~~~eLFG~~kGaftGa-~~~k~Glfe~A~----GGtLfLDEI~~LP--------~~~Q~kLl~~le~g~~~rvG~~~~~~ 212 (403)
T COG1221 146 QEAELFGHEKGAFTGA-QGGKAGLFEQAN----GGTLFLDEIHRLP--------PEGQEKLLRVLEEGEYRRVGGSQPRP 212 (403)
T ss_pred HHHHHhccccceeecc-cCCcCchheecC----CCEEehhhhhhCC--------HhHHHHHHHHHHcCceEecCCCCCcC
Confidence 1 1221 111223444432 2389999999994 46677888888654
Q ss_pred -ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHH----HHHHHhhhhhhhcccCCCCC---HHHHHHHHH
Q psy14500 160 -ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEET----ISILRGLQKKYEVHHGVEIT---DPAIVAASE 228 (938)
Q Consensus 160 -~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~----~~il~~~~~~~~~~~~~~i~---~~~l~~~~~ 228 (938)
+|++|+|||..--.... .-..+.+|...+.+..|+..+| ..++.+++..+....+..++ ++++..+..
T Consensus 213 ~dVRli~AT~~~l~~~~~-~g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~ 288 (403)
T COG1221 213 VDVRLICATTEDLEEAVL-AGADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLA 288 (403)
T ss_pred CCceeeeccccCHHHHHH-hhcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHh
Confidence 57899999876422221 1136677665555555555444 45567777766555554433 355554443
No 410
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.06 E-value=7.4e-10 Score=116.95 Aligned_cols=143 Identities=16% Similarity=0.231 Sum_probs=95.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch-hh-hhhhcCCCC-C
Q psy14500 435 AISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK-HS-ISRLIGAPP-G 511 (938)
Q Consensus 435 ~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~-~~-~~~l~g~~~-~ 511 (938)
.-+.+...++..+. .+.+||+||+|+||+.+|.++|+.++....+- .|..+... |. +..+..... .
T Consensus 5 ~~~~L~~~i~~~rl--------~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~~~~~HPD~~~i~p~~~~~ 73 (290)
T PRK05917 5 AWEALIQRVRDQKV--------PSAIILHGQDLSNLSARAYELASLILKETSPE---AAYKISQKIHPDIHEFSPQGKGR 73 (290)
T ss_pred HHHHHHHHHHcCCc--------CeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHHhcCCCCCEEEEecCCCCC
Confidence 34566666665443 25799999999999999999999996533221 12111100 00 000100000 1
Q ss_pred CccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhh
Q psy14500 512 YIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 587 (938)
Q Consensus 512 ~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 587 (938)
.++.+..+.+...+.. +++.|++||++|+|+.+++|+||+.||+ +..+++||+.|+...
T Consensus 74 ~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-----------Pp~~~~fiL~~~~~~------ 136 (290)
T PRK05917 74 LHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED-----------PPQHGVIILTSAKPQ------ 136 (290)
T ss_pred cCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc-----------CCCCeEEEEEeCChh------
Confidence 1333444445454433 4468999999999999999999999998 778888988888633
Q ss_pred hcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCC
Q psy14500 588 EKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYL 624 (938)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l 624 (938)
.+.|.++||| ..+.|+|+
T Consensus 137 ------------------~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 137 ------------------RLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred ------------------hCcHHHHhcc-eEEEccch
Confidence 4778999999 58999986
No 411
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=6.6e-09 Score=112.22 Aligned_cols=150 Identities=13% Similarity=0.093 Sum_probs=104.4
Q ss_pred HHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC-------------cCCCeEEEEehhhhhcCc
Q psy14500 37 DDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS-------------LLSKKILLLDIALLLAGT 102 (938)
Q Consensus 37 ~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~-------------~~~~~~~~~~~~~l~~~~ 102 (938)
....+++...+.+++.+| +||+||.|+||+++|+++|+.+.+.+.+.. ..-..++.+.... . +
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~--~-~ 85 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK--E-G 85 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc--C-C
Confidence 455677777777766665 688899999999999999999876542110 0001333333311 0 0
Q ss_pred cccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhHHHHhhh
Q psy14500 103 KYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIE 177 (938)
Q Consensus 103 ~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~~~~~~~ 177 (938)
+.. ....++.+...+. ..++..|++||++|.|. .+++|.|+..+|. .++.+|.+|+.++ .
T Consensus 86 ~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~-----~ 150 (319)
T PRK06090 86 KSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN--------ESASNALLKTLEEPAPNCLFLLVTHNQK-----R 150 (319)
T ss_pred CcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----h
Confidence 111 1123455544443 22445699999999993 4688999999986 4688888888887 8
Q ss_pred cCHHHHcccceEEeeCCCHHHHHHHHH
Q psy14500 178 KDAAFERRFQKILVEEPDIEETISILR 204 (938)
Q Consensus 178 ld~al~~Rf~~i~~~~p~~~e~~~il~ 204 (938)
+-|+++|||..+.|++|+.++..+.+.
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 999999999999999999998887765
No 412
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.03 E-value=1.8e-09 Score=126.27 Aligned_cols=184 Identities=16% Similarity=0.208 Sum_probs=117.5
Q ss_pred hcCCCCCccccHHHHHHHHHHHh--cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC--
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG-- 101 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~--~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~-- 101 (938)
...+|+++||.+..+++++..+. .....+|||+|++||||+++|++++...... ..+++.++|+.+...
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~-------~~pfv~inca~~~~~~~ 271 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPRG-------KKPFLALNCASIPDDVV 271 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCCC-------CCCeEEeccccCCHHHH
Confidence 34589999999998888887665 3556789999999999999999998765333 456778887654210
Q ss_pred ---------ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------
Q psy14500 102 ---------TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------- 159 (938)
Q Consensus 102 ---------~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 159 (938)
+.+.|..+ ....+|+.+. ...|||||++.|. ...+..|..+++.+
T Consensus 272 e~elFG~~~~~~~~~~~-~~~g~~e~a~----~GtL~LdeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 338 (520)
T PRK10820 272 ESELFGHAPGAYPNALE-GKKGFFEQAN----GGSVLLDEIGEMS--------PRMQAKLLRFLNDGTFRRVGEDHEVHV 338 (520)
T ss_pred HHHhcCCCCCCcCCccc-CCCChhhhcC----CCEEEEeChhhCC--------HHHHHHHHHHHhcCCcccCCCCcceee
Confidence 00111000 0112333322 3379999999993 45667777777543
Q ss_pred ceEEEEecChhHH--HHhhhcCHHHHcccceEEeeCCCHHHHH----HHHHhhhhhhhcccC---CCCCHHHHHHHHHh
Q psy14500 160 ELHCIGATTLNEY--RQYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG---VEITDPAIVAASEL 229 (938)
Q Consensus 160 ~i~vI~~tn~~~~--~~~~~ld~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 229 (938)
++++|++|+.+.- ...-...+.|..|+..+.+..|+..+|. .+++.++.++....+ ..++++++..+..+
T Consensus 339 ~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y 417 (520)
T PRK10820 339 DVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 417 (520)
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcC
Confidence 4688998876531 1112356778889887666666555544 455666665544333 35777777665443
No 413
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.03 E-value=1.6e-09 Score=131.00 Aligned_cols=183 Identities=15% Similarity=0.216 Sum_probs=118.4
Q ss_pred CCCCCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC---c
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---T 102 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~---~ 102 (938)
.+|+.++|.+..+++++..+.+ ....+|||+|++||||+++|+++++..... +.+++.+||..+... .
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~-------~~pfv~vnc~~~~~~~~~~ 394 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESERA-------AGPYIAVNCQLYPDEALAE 394 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCcc-------CCCeEEEECCCCChHHHHH
Confidence 4799999999998888886653 556779999999999999999999876433 457888888654310 0
Q ss_pred cccchH----HHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceEEEE
Q psy14500 103 KYRGEF----EDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIG 165 (938)
Q Consensus 103 ~~~g~~----~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~vI~ 165 (938)
...|.. .......|.. ..+..||||||+.| +.+.+..|..+++.+ ++++|+
T Consensus 395 elfg~~~~~~~~~~~g~~~~----a~~GtL~ldei~~l--------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~ 462 (638)
T PRK11388 395 EFLGSDRTDSENGRLSKFEL----AHGGTLFLEKVEYL--------SPELQSALLQVLKTGVITRLDSRRLIPVDVRVIA 462 (638)
T ss_pred HhcCCCCcCccCCCCCceeE----CCCCEEEEcChhhC--------CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEE
Confidence 000100 0000011211 12348999999999 346777888888654 467999
Q ss_pred ecChhHHH--HhhhcCHHHHcccceEEeeCCCHHHHH----HHHHhhhhhhhccc--CCCCCHHHHHHHHHh
Q psy14500 166 ATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHH--GVEITDPAIVAASEL 229 (938)
Q Consensus 166 ~tn~~~~~--~~~~ld~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~--~~~i~~~~l~~~~~~ 229 (938)
+|+.+... ..-.+.+.|..|+..+.+..|+..+|. .+++.++.++.... .+.++++++..+..+
T Consensus 463 ~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y 534 (638)
T PRK11388 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY 534 (638)
T ss_pred eccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC
Confidence 98875311 112345677778887777777666654 45566665543222 246788877766654
No 414
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.02 E-value=7.9e-10 Score=108.78 Aligned_cols=139 Identities=17% Similarity=0.261 Sum_probs=87.3
Q ss_pred ccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC--------c
Q psy14500 33 VIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG--------T 102 (938)
Q Consensus 33 lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~--------~ 102 (938)
+||.+..++++.+.+.+ ..+.+|||+|++||||+.+|++|++...+. +.+++.++|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~-------~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPRK-------NGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTTT-------TS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhcc-------cCCeEEEehhhhhcchhhhhhhcc
Confidence 68999999888887664 666899999999999999999999865333 568999999754311 0
Q ss_pred ---cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceEEEEe
Q psy14500 103 ---KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGA 166 (938)
Q Consensus 103 ---~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~vI~~ 166 (938)
.+.|... .-..++..|. ..+||||||+.| +.+++..|..+++.+ ++++|++
T Consensus 74 ~~~~~~~~~~-~~~G~l~~A~----~GtL~Ld~I~~L--------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~s 140 (168)
T PF00158_consen 74 EKGAFTGARS-DKKGLLEQAN----GGTLFLDEIEDL--------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAS 140 (168)
T ss_dssp CSSSSTTTSS-EBEHHHHHTT----TSEEEEETGGGS---------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEE
T ss_pred cccccccccc-ccCCceeecc----ceEEeecchhhh--------HHHHHHHHHHHHhhchhccccccccccccceEEee
Confidence 0000000 0124444443 238999999999 446788888888533 5789999
Q ss_pred cChhHH--HHhhhcCHHHHcccceEEe
Q psy14500 167 TTLNEY--RQYIEKDAAFERRFQKILV 191 (938)
Q Consensus 167 tn~~~~--~~~~~ld~al~~Rf~~i~~ 191 (938)
|+.+-. -..-.+.+.|..|+..+.+
T Consensus 141 t~~~l~~~v~~g~fr~dLy~rL~~~~i 167 (168)
T PF00158_consen 141 TSKDLEELVEQGRFREDLYYRLNVFTI 167 (168)
T ss_dssp ESS-HHHHHHTTSS-HHHHHHHTTEEE
T ss_pred cCcCHHHHHHcCCChHHHHHHhceEec
Confidence 996531 1122445666667665443
No 415
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.7e-09 Score=108.06 Aligned_cols=106 Identities=25% Similarity=0.375 Sum_probs=75.5
Q ss_pred eEEEEeCccccccCCCCCC---c-cchhhhhhhhccCC------------ceEEEEecChhHHHHhhhcCHHHHcccce-
Q psy14500 126 IIIFIDELHTMIGTGKVEG---S-IDAGNMLKPELSRG------------ELHCIGATTLNEYRQYIEKDAAFERRFQK- 188 (938)
Q Consensus 126 ~iL~iDEid~l~~~~~~~~---~-~~~~~~L~~~l~~~------------~i~vI~~tn~~~~~~~~~ld~al~~Rf~~- 188 (938)
.|+||||||.++..+..++ | ..++.-|+++++.. .+.||++.-.. ..+-..+-|.|.-||+.
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh-~sKPSDLiPELQGRfPIR 330 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFH-VAKPSDLIPELQGRFPIR 330 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCcee-cCChhhcChhhcCCCceE
Confidence 3999999999987765333 1 23777888888642 46788875432 12223788999999996
Q ss_pred EEeeCCCHHHHHHHH----Hhhhhhhhc---ccC--CCCCHHHHHHHHHhhhh
Q psy14500 189 ILVEEPDIEETISIL----RGLQKKYEV---HHG--VEITDPAIVAASELSYR 232 (938)
Q Consensus 189 i~~~~p~~~e~~~il----~~~~~~~~~---~~~--~~i~~~~l~~~~~~s~~ 232 (938)
+++..++.++...|| ..+.++|.. ..+ +.++++++..++..+..
T Consensus 331 VEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~~ 383 (444)
T COG1220 331 VELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAYQ 383 (444)
T ss_pred EEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHHH
Confidence 999999999999998 344444432 333 56789999888887643
No 416
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.3e-09 Score=119.27 Aligned_cols=150 Identities=20% Similarity=0.270 Sum_probs=96.6
Q ss_pred CCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCC-------------cCCCeE----
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS-------------LLSKKI---- 90 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~-------------~~~~~~---- 90 (938)
..|.+++||+.+.+.+.-... ...|+|++||||||||++|+.+...++.-..++. ..++++
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA--GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~r 253 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA--GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHR 253 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh--cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeC
Confidence 488999999999988887644 4489999999999999999988766532111110 001111
Q ss_pred ------EEEehhhhhcCccc--cchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCce-
Q psy14500 91 ------LLLDIALLLAGTKY--RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGEL- 161 (938)
Q Consensus 91 ------~~~~~~~l~~~~~~--~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i- 161 (938)
.+.+..++++|+.. .|+.. ..++ .||||||+-.+ ...+.+.|+..||++++
T Consensus 254 PFr~PHHsaS~~aLvGGG~~p~PGeIs----------LAH~--GVLFLDElpef--------~~~iLe~LR~PLE~g~i~ 313 (490)
T COG0606 254 PFRAPHHSASLAALVGGGGVPRPGEIS----------LAHN--GVLFLDELPEF--------KRSILEALREPLENGKII 313 (490)
T ss_pred CccCCCccchHHHHhCCCCCCCCCcee----------eecC--CEEEeeccchh--------hHHHHHHHhCccccCcEE
Confidence 12233334433321 11111 1223 39999999877 34688999999988754
Q ss_pred --------------EEEEecChhHHH------------------HhhhcCHHHHcccce-EEeeCCCHHHH
Q psy14500 162 --------------HCIGATTLNEYR------------------QYIEKDAAFERRFQK-ILVEEPDIEET 199 (938)
Q Consensus 162 --------------~vI~~tn~~~~~------------------~~~~ld~al~~Rf~~-i~~~~p~~~e~ 199 (938)
++|++||+..+. ...++...|++|++. ++++.++..++
T Consensus 314 IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 314 ISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred EEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence 468888854331 123578899999995 88888764443
No 417
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.01 E-value=7.9e-11 Score=113.21 Aligned_cols=111 Identities=19% Similarity=0.325 Sum_probs=69.2
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHH-------HHHHHHHHHhcCCCe
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR-------LKKILKEISNNQKDI 126 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~-------l~~~~~~a~~~~~~~ 126 (938)
+|||+||||||||++|+.+|+.+ +.+++.+.++.........|.+.-. -..+...+ ..+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~---~~~~ 67 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM---RKGG 67 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH---HEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeecccccccccccccccc---ccee
Confidence 58999999999999999999999 6677777765432111111111000 00011111 1367
Q ss_pred EEEEeCccccccCCCCCCccchhhhhhhhccC---------------C------ceEEEEecChhHHHHhhhcCHHHHcc
Q psy14500 127 IIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---------------G------ELHCIGATTLNEYRQYIEKDAAFERR 185 (938)
Q Consensus 127 iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---------------~------~i~vI~~tn~~~~~~~~~ld~al~~R 185 (938)
+++|||++... .++.+.|.++++. . ++++|+|+|+.. .....+++++++|
T Consensus 68 il~lDEin~a~--------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~R 138 (139)
T PF07728_consen 68 ILVLDEINRAP--------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDR 138 (139)
T ss_dssp EEEESSCGG----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT
T ss_pred EEEECCcccCC--------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhh
Confidence 99999999873 3556666666632 1 289999999887 4455899999999
Q ss_pred c
Q psy14500 186 F 186 (938)
Q Consensus 186 f 186 (938)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 8
No 418
>PRK12377 putative replication protein; Provisional
Probab=99.00 E-value=1.5e-09 Score=113.20 Aligned_cols=106 Identities=22% Similarity=0.381 Sum_probs=73.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
+++|+||||||||+||.+|++.+...+..+..+.+.++...-... +.. ......+...+.. ..+|+|||+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~--~~~------~~~~~~~l~~l~~--~dLLiIDDl 172 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES--YDN------GQSGEKFLQELCK--VDLLVLDEI 172 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH--Hhc------cchHHHHHHHhcC--CCEEEEcCC
Confidence 799999999999999999999998777788888877765532111 110 0011122233333 359999999
Q ss_pred --cccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhh
Q psy14500 539 --EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 584 (938)
Q Consensus 539 --d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 584 (938)
+..++..++.|+++++... ....-.|+|||.+...+
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~----------~~~~ptiitSNl~~~~l 210 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRT----------ASMRSVGMLTNLNHEAM 210 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----------hcCCCEEEEcCCCHHHH
Confidence 5677888999999998521 11233688999987665
No 419
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.99 E-value=2.1e-08 Score=118.50 Aligned_cols=118 Identities=14% Similarity=0.196 Sum_probs=79.2
Q ss_pred eEEEEeCccccccCCCCCCccchhhhhhhhccCC-----------------------ceEEEEecChhHHHHhhhcCHHH
Q psy14500 126 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-----------------------ELHCIGATTLNEYRQYIEKDAAF 182 (938)
Q Consensus 126 ~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~i~vI~~tn~~~~~~~~~ld~al 182 (938)
.+|||||++.|. ...+..|+..|+.+ ++++|+++|+.. ...+++.|
T Consensus 219 GtL~Ldei~~L~--------~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~---l~~l~~~l 287 (608)
T TIGR00764 219 GVLYIDEIKTMP--------LEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD---LEGMHPAL 287 (608)
T ss_pred CEEEEEChHhCC--------HHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH---HhhcCHHH
Confidence 478888888873 34566677666422 467899999875 33689999
Q ss_pred Hcccc---e-EEeeC--C-CHHHHHHHHHhhhhhhhcc-cCCCCCHHHHHHHHHhhhhccccCCC----chhhhhHHHHH
Q psy14500 183 ERRFQ---K-ILVEE--P-DIEETISILRGLQKKYEVH-HGVEITDPAIVAASELSYRYISDRFM----PDKAIDLIDEA 250 (938)
Q Consensus 183 ~~Rf~---~-i~~~~--p-~~~e~~~il~~~~~~~~~~-~~~~i~~~~l~~~~~~s~~~~~~~~~----p~~a~~ll~~a 250 (938)
++||. . +.|+. | +.+.+..+++.+....... .-..++++++..+.+.+.+....+.. .+...+++..+
T Consensus 288 ~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~A 367 (608)
T TIGR00764 288 RSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRAA 367 (608)
T ss_pred HHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHHH
Confidence 99998 3 44432 3 5666667766665544433 22468999999999887776655543 56677777776
Q ss_pred HHHH
Q psy14500 251 AAKI 254 (938)
Q Consensus 251 ~~~~ 254 (938)
...+
T Consensus 368 ~~iA 371 (608)
T TIGR00764 368 GDIA 371 (608)
T ss_pred HHHH
Confidence 4433
No 420
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=7.1e-09 Score=114.66 Aligned_cols=217 Identities=18% Similarity=0.219 Sum_probs=138.6
Q ss_pred ccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC-C-CceEEeccccccchhhhh---
Q psy14500 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-E-ESIIRIDMSEFIEKHSIS--- 503 (938)
Q Consensus 429 viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~-~-~~~~~~~~~~~~~~~~~~--- 503 (938)
+.+.+.-++++...+...-.+ ..|. +++++||||||||.+++.+.+.+... . ..++++||..+.+...+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~----~~p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 19 LPHREEEINQLASFLAPALRG----ERPS-NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcC----CCCc-cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 455566677777776654433 2333 69999999999999999999998543 1 227999999988775442
Q ss_pred -hhcCCCCCCcccccc---chhHHHHH-hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecC
Q psy14500 504 -RLIGAPPGYIGYEEG---GYLTEIVR-RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 578 (938)
Q Consensus 504 -~l~g~~~~~~g~~~~---~~l~~~~~-~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 578 (938)
.-++..+ ..|.... ..+.+.+. ....-||++||+|.+...-.+.|+.++.-..- ...++.+|+.+|
T Consensus 94 ~~~~~~~p-~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~--------~~~~v~vi~i~n 164 (366)
T COG1474 94 LNKLGKVP-LTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE--------NKVKVSIIAVSN 164 (366)
T ss_pred HHHcCCCC-CCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc--------cceeEEEEEEec
Confidence 2223222 3333322 23334443 35567999999999877655666666653110 134567788888
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHH
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 657 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 657 (938)
.-. +...+.|.+.+++.. .|.|+|++.+++..|+......- + ..-.+++++
T Consensus 165 ~~~---------------------~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~---~----~~~~~~~~v 216 (366)
T COG1474 165 DDK---------------------FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG---F----SAGVIDDDV 216 (366)
T ss_pred cHH---------------------HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh---c----cCCCcCccH
Confidence 521 122345555555533 68999999999999976655432 1 124588999
Q ss_pred HHHHHhhcccccccccccccchHHHHHHHHHhc
Q psy14500 658 LKKISNIGFDLIYGARDVHGCKKSLSILLKKIH 690 (938)
Q Consensus 658 ~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~ 690 (938)
+++++...... -||....++.+..+.+...
T Consensus 217 l~lia~~~a~~---~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 217 LKLIAALVAAE---SGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHHHHHHHc---CccHHHHHHHHHHHHHHHH
Confidence 99998743222 2477777777777776554
No 421
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.99 E-value=8.3e-10 Score=116.23 Aligned_cols=196 Identities=17% Similarity=0.256 Sum_probs=108.5
Q ss_pred ccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCC-CcCCCeEEEE-ehhhh------------
Q psy14500 33 VIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPN-SLLSKKILLL-DIALL------------ 98 (938)
Q Consensus 33 lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~-~~~~~~~~~~-~~~~l------------ 98 (938)
++||+.+++.|...+.+.....++|+||+|+|||+|++.+.+.+....... .......... .....
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 589999999999999888788999999999999999999998873322110 0000000000 00000
Q ss_pred -h----cCc-------cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccc-cCCCCCCccchhhhhhhhc----cCCce
Q psy14500 99 -L----AGT-------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMI-GTGKVEGSIDAGNMLKPEL----SRGEL 161 (938)
Q Consensus 99 -~----~~~-------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~-~~~~~~~~~~~~~~L~~~l----~~~~i 161 (938)
. .+. .........+..++..+.....+.||+|||++.+. ... ........|...+ ....+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~~ 157 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---EDKDFLKSLRSLLDSLLSQQNV 157 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---TTHHHHHHHHHHHHH----TTE
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---chHHHHHHHHHHHhhccccCCc
Confidence 0 000 01122344677777777766656999999999997 211 1122223333333 34566
Q ss_pred EEEEecChhHH-HHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 162 HCIGATTLNEY-RQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 162 ~vI~~tn~~~~-~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
.+|.+++...+ ..+.....++..|+..+.+++.+.++..++++...... .++.++++.+..+..+++|..
T Consensus 158 ~~v~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 158 SIVITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp EEEEEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred eEEEECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCCH
Confidence 66666554432 22234455677788889999999999999998766653 122458999999999988754
No 422
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.99 E-value=4.4e-08 Score=105.66 Aligned_cols=186 Identities=18% Similarity=0.178 Sum_probs=108.5
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE--Eehhh----hh--cCccccch----HHHHHHHHHH
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL--LDIAL----LL--AGTKYRGE----FEDRLKKILK 117 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~--~~~~~----l~--~~~~~~g~----~~~~l~~~~~ 117 (938)
...+.++|+||+|+||||+++.+++.+...... .+.+.. .+... +. .+....+. ....+...+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~----~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQERVV----AAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE----EeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 334568999999999999999999887432110 000000 01110 10 01111111 1122333333
Q ss_pred HHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc----C-CceEEEEecChhHHHHhhh--cCHHHHcccc-eE
Q psy14500 118 EISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS----R-GELHCIGATTLNEYRQYIE--KDAAFERRFQ-KI 189 (938)
Q Consensus 118 ~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~----~-~~i~vI~~tn~~~~~~~~~--ld~al~~Rf~-~i 189 (938)
.....+.+.+|+|||++.+.. +..+.|+.+.+ . ..+.++.+..+ ++..... ....+.+|+. .+
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~--------~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~ 187 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTP--------ELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASC 187 (269)
T ss_pred HHHhCCCCeEEEEECcccCCH--------HHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeee
Confidence 333345678999999999833 22333433322 1 23344555544 3332222 1235777876 48
Q ss_pred EeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHH
Q psy14500 190 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 254 (938)
Q Consensus 190 ~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 254 (938)
.+++++.++...++...+..........+++++++.+...+.|+. +....+++.+....
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p------~~i~~l~~~~~~~a 246 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP------RLINILCDRLLLSA 246 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc------cHHHHHHHHHHHHH
Confidence 999999999999998877654433445789999999999988765 77666666665443
No 423
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.99 E-value=5e-09 Score=122.26 Aligned_cols=199 Identities=16% Similarity=0.212 Sum_probs=121.7
Q ss_pred CccccHHHHHHHHHHHhcCCC------------CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE----eh
Q psy14500 32 PVIGRDDEIRRAIQVLQRRSK------------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL----DI 95 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~~~~------------~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~----~~ 95 (938)
.++|++.+...++-.+..+.. .||||+|+||||||++|+++++..... .+.. +.
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~----------~~~~~~~~~~ 273 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA----------VYTTGKGSSA 273 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc----------eEcCCCCCCc
Confidence 789999887777766654321 289999999999999999999876321 1111 11
Q ss_pred hhhhcC---ccccchHHHHHH-HHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC------------
Q psy14500 96 ALLLAG---TKYRGEFEDRLK-KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 159 (938)
Q Consensus 96 ~~l~~~---~~~~g~~~~~l~-~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------ 159 (938)
..+... ....|++. ++ ..+.. ....+++|||++.+.+ ..+..|.+.|+++
T Consensus 274 ~~l~~~~~~~~~~g~~~--~~~G~l~~----A~~Gil~iDEi~~l~~--------~~q~~L~e~me~~~i~i~k~G~~~~ 339 (509)
T smart00350 274 VGLTAAVTRDPETREFT--LEGGALVL----ADNGVCCIDEFDKMDD--------SDRTAIHEAMEQQTISIAKAGITTT 339 (509)
T ss_pred CCccccceEccCcceEE--ecCccEEe----cCCCEEEEechhhCCH--------HHHHHHHHHHhcCEEEEEeCCEEEE
Confidence 111100 00011110 00 01111 1133899999999843 4566777777543
Q ss_pred ---ceEEEEecChhHH--------HHhhhcCHHHHcccce--EEeeCCCHHHHHHHHHhhhhhhhc-------ccCCCCC
Q psy14500 160 ---ELHCIGATTLNEY--------RQYIEKDAAFERRFQK--ILVEEPDIEETISILRGLQKKYEV-------HHGVEIT 219 (938)
Q Consensus 160 ---~i~vI~~tn~~~~--------~~~~~ld~al~~Rf~~--i~~~~p~~~e~~~il~~~~~~~~~-------~~~~~i~ 219 (938)
.+.+|+|+|+.+- ...+.+++++++||+. +.+..|+.+....|+++++..... .....++
T Consensus 340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~ 419 (509)
T smart00350 340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPIS 419 (509)
T ss_pred ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCC
Confidence 3568999998641 1124799999999985 557889999999999887653211 1112466
Q ss_pred HHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHH
Q psy14500 220 DPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 220 ~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 255 (938)
.+.+......+..++ ...++..+.+++.......+
T Consensus 420 ~~~l~~yi~~ar~~~-~P~ls~~~~~~i~~~y~~~R 454 (509)
T smart00350 420 QEFLRKYIAYAREKI-KPKLSEEAAEKLVKAYVDLR 454 (509)
T ss_pred HHHHHHHHHHHHhcC-CCCCCHHHHHHHHHHHHHhc
Confidence 677777666666532 11256667776666655554
No 424
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.98 E-value=4.1e-09 Score=111.92 Aligned_cols=156 Identities=14% Similarity=0.218 Sum_probs=102.4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEeccccc---cc-hhhhhh
Q psy14500 431 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSEF---IE-KHSISR 504 (938)
Q Consensus 431 Gq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~~---~~-~~~~~~ 504 (938)
+|+.+++.+..++...+.. +.+||+|| +||+++|+.+|..++..+.. -.+-.|... .. .|..-.
T Consensus 6 ~q~~~~~~L~~~~~~~rl~--------hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLN--------HAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcCCcc--------eeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCee
Confidence 5778888899988866533 57999996 68999999999988643210 011112111 10 011001
Q ss_pred hcCCCCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCC
Q psy14500 505 LIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG 580 (938)
Q Consensus 505 l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~ 580 (938)
.+......++.+..+.+...+.. +++.|++||++|+|+...+|+||+.||+ +..+++||++|+..
T Consensus 76 ~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-----------Pp~~t~~iL~t~~~ 144 (290)
T PRK07276 76 VIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-----------PQSEIYIFLLTNDE 144 (290)
T ss_pred eecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEECCh
Confidence 11111111233333444444433 4468999999999999999999999998 77888999988763
Q ss_pred chhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHH
Q psy14500 581 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 633 (938)
Q Consensus 581 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~ 633 (938)
. .+.|.+.||| .+++|++ +.+++.+++
T Consensus 145 ~------------------------~lLpTI~SRc-q~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 145 N------------------------KVLPTIKSRT-QIFHFPK-NEAYLIQLL 171 (290)
T ss_pred h------------------------hCchHHHHcc-eeeeCCC-cHHHHHHHH
Confidence 3 3678999999 5999977 666655553
No 425
>KOG0990|consensus
Probab=98.98 E-value=2.5e-09 Score=110.46 Aligned_cols=195 Identities=17% Similarity=0.194 Sum_probs=128.5
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
..+++|++++..+.+.... ++.| ++||+||||+|||+...+.|..+++.. + .+.. +..+.
T Consensus 41 ~dv~~~~ei~st~~~~~~~-------~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~-~-----~~~m-----~leln 100 (360)
T KOG0990|consen 41 GIVIKQEPIWSTENRYSGM-------PGLP--HLLFYGPPGTGKTSTILANARDFYSPH-P-----TTSM-----LLELN 100 (360)
T ss_pred hhHhcCCchhhHHHHhccC-------CCCC--cccccCCCCCCCCCchhhhhhhhcCCC-C-----chhH-----HHHhh
Confidence 4567888888887777332 2233 799999999999999999999986531 1 1111 11111
Q ss_pred CCCCCCcccccc-chhHHHHH-------hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecC
Q psy14500 507 GAPPGYIGYEEG-GYLTEIVR-------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 578 (938)
Q Consensus 507 g~~~~~~g~~~~-~~l~~~~~-------~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 578 (938)
.+...-++.... -..+...+ .+.+..+++||+|.+..++||+|-++++. ...++.|++.+|
T Consensus 101 aSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek-----------~t~n~rF~ii~n 169 (360)
T KOG0990|consen 101 ASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK-----------YTANTRFATISN 169 (360)
T ss_pred ccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHH-----------hccceEEEEecc
Confidence 110000111000 01111111 23678999999999999999999998875 446677877788
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHH
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 658 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 658 (938)
... ...|.+.+||. .++|.|++..+....+.+.+.. .. +..+++..
T Consensus 170 ~~~------------------------ki~pa~qsRct-rfrf~pl~~~~~~~r~shi~e~-------e~--~~~~~~~~ 215 (360)
T KOG0990|consen 170 PPQ------------------------KIHPAQQSRCT-RFRFAPLTMAQQTERQSHIRES-------EQ--KETNPEGY 215 (360)
T ss_pred Chh------------------------hcCchhhcccc-cCCCCCCChhhhhhHHHHHHhc-------ch--hhcCHHHH
Confidence 643 36789999995 8999999998888885554432 11 55667777
Q ss_pred HHHHhhcccccccccccccchHHHHHHHHHhccc
Q psy14500 659 KKISNIGFDLIYGARDVHGCKKSLSILLKKIHKK 692 (938)
Q Consensus 659 ~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~ 692 (938)
..++.+ ..||+|..++.|+....+++-.
T Consensus 216 ~a~~r~------s~gDmr~a~n~Lqs~~~~~~~~ 243 (360)
T KOG0990|consen 216 SALGRL------SVGDMRVALNYLQSILKKVMER 243 (360)
T ss_pred HHHHHH------hHHHHHHHHHHHHHHHHHhCCC
Confidence 766663 3689999988888887666543
No 426
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.97 E-value=4.4e-09 Score=120.97 Aligned_cols=214 Identities=17% Similarity=0.159 Sum_probs=133.5
Q ss_pred hhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCC-----CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 18 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRS-----KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 18 ~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~-----~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
...|+++|+|.+.+++.-+.+.++++..+|.... ..-+||+|||||||||+++.||+++ +..+.+
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----------g~~v~E 75 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----------GFEVQE 75 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCeeEE
Confidence 3589999999999999999999999999887421 2336888999999999999999998 333332
Q ss_pred Ee-hhhh----------h----cCccccchHHHHHHHH-HHHHHh----------cCCCeEEEEeCccccccCCCCCCcc
Q psy14500 93 LD-IALL----------L----AGTKYRGEFEDRLKKI-LKEISN----------NQKDIIIFIDELHTMIGTGKVEGSI 146 (938)
Q Consensus 93 ~~-~~~l----------~----~~~~~~g~~~~~l~~~-~~~a~~----------~~~~~iL~iDEid~l~~~~~~~~~~ 146 (938)
-. .... . ....+..... .+..+ +...+. ...+.||+|||+-.++... ..
T Consensus 76 w~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~-~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~~ 150 (519)
T PF03215_consen 76 WINPVSFRESDNQEDDFESDFNKFDEFLSQSD-KFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----TS 150 (519)
T ss_pred ecCCCCccccccccccccccccccccccchhh-hhccccccccccccccccCCCcCCCceEEEeeccccccchh----HH
Confidence 11 1110 0 0000111111 12222 111111 1236799999998765432 23
Q ss_pred chhhhhhhhccCC---ceEEEEecC--h---hHHH-----HhhhcCHHHHc--ccceEEeeCCCHHHHHHHHHhhhhhh-
Q psy14500 147 DAGNMLKPELSRG---ELHCIGATT--L---NEYR-----QYIEKDAAFER--RFQKILVEEPDIEETISILRGLQKKY- 210 (938)
Q Consensus 147 ~~~~~L~~~l~~~---~i~vI~~tn--~---~~~~-----~~~~ld~al~~--Rf~~i~~~~p~~~e~~~il~~~~~~~- 210 (938)
...+.|+..+..+ .+++|.+-+ . ..++ -...+++.++. ++..|.|.+....-..+.|+.++..-
T Consensus 151 ~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~ 230 (519)
T PF03215_consen 151 RFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEA 230 (519)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHh
Confidence 4556666666533 455555511 0 1100 01135677777 44569999999999999998887753
Q ss_pred hcccC-CCCC--HHHHHHHHHhhhhccccCCCchhhhhHHHHHHH
Q psy14500 211 EVHHG-VEIT--DPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 211 ~~~~~-~~i~--~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 252 (938)
....+ ...+ ..+++.++..+.|++ +.|+..|+..+.
T Consensus 231 ~~~~~~~~~p~~~~~l~~I~~~s~GDI------RsAIn~LQf~~~ 269 (519)
T PF03215_consen 231 RSSSGKNKVPDKQSVLDSIAESSNGDI------RSAINNLQFWCL 269 (519)
T ss_pred hhhcCCccCCChHHHHHHHHHhcCchH------HHHHHHHHHHhc
Confidence 11112 1222 346899999999999 888888877765
No 427
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.96 E-value=1e-09 Score=108.27 Aligned_cols=110 Identities=21% Similarity=0.348 Sum_probs=71.1
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHH-cCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCe
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDI 126 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l~-~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~ 126 (938)
+..++||+||+|||||.+|+++|+.+. .. ..+++.+|++.+..+.. ....+..++..+. ......
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~-------~~~~~~~d~s~~~~~~~----~~~~~~~l~~~~~~~v~~~~~g 70 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGS-------ERPLIRIDMSEYSEGDD----VESSVSKLLGSPPGYVGAEEGG 70 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SS-------CCEEEEEEGGGHCSHHH----CSCHCHHHHHHTTCHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCC-------ccchHHHhhhcccccch----HHhhhhhhhhcccceeeccchh
Confidence 457899999999999999999999994 22 45899999987764110 0001222222110 001112
Q ss_pred EEEEeCccccccCCCCCC---ccchhhhhhhhccCC-------------ceEEEEecChhH
Q psy14500 127 IIFIDELHTMIGTGKVEG---SIDAGNMLKPELSRG-------------ELHCIGATTLNE 171 (938)
Q Consensus 127 iL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~~~-------------~i~vI~~tn~~~ 171 (938)
||||||||+..+...... ...+++.|+++++.+ ++++|+|+|-..
T Consensus 71 VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 71 VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 999999999977422111 135788899888643 567999999654
No 428
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.96 E-value=5.3e-11 Score=108.06 Aligned_cols=108 Identities=25% Similarity=0.316 Sum_probs=59.1
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh------hhhcCcccc---chHHHHHHHHHHHHHhcCC
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA------LLLAGTKYR---GEFEDRLKKILKEISNNQK 124 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~------~l~~~~~~~---g~~~~~l~~~~~~a~~~~~ 124 (938)
||||.|+||+|||++|+++|+.+ +..+..+... ++....-+. +.++-.-..+|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----------~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------- 62 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----------GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------- 62 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----------T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT---------
T ss_pred CEeeECCCccHHHHHHHHHHHHc----------CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh--------
Confidence 68999999999999999999988 5555555442 222111000 00000000011
Q ss_pred CeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceEEEEecChhHHHHhhhcCHHHHcccc
Q psy14500 125 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYRQYIEKDAAFERRFQ 187 (938)
Q Consensus 125 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~vI~~tn~~~~~~~~~ld~al~~Rf~ 187 (938)
..|+++||+++..+ ..+++|++.|+++ .+.+|+|.|+.++...+.+++++++||.
T Consensus 63 ~~ill~DEiNrapp--------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 63 TNILLADEINRAPP--------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SSEEEEETGGGS-H--------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred hceeeecccccCCH--------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 13999999998843 5677888888654 3568999999998899999999999995
No 429
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.96 E-value=1.4e-08 Score=109.85 Aligned_cols=163 Identities=20% Similarity=0.266 Sum_probs=102.9
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCC----CCCCcC------------------
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGE----VPNSLL------------------ 86 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~----~p~~~~------------------ 86 (938)
-|.-++|++.....|+.-.-.+...++||-|+.||||||++++|+..|+... +|....
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~ 94 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDEL 94 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhcccc
Confidence 4567899988777776655567778999999999999999999999885421 110000
Q ss_pred --------CCeEEEEehhhhhcCccccchHHHHHHHHHHH----H----HhcCCCeEEEEeCccccccCCCCCCccchhh
Q psy14500 87 --------SKKILLLDIALLLAGTKYRGEFEDRLKKILKE----I----SNNQKDIIIFIDELHTMIGTGKVEGSIDAGN 150 (938)
Q Consensus 87 --------~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~----a----~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~ 150 (938)
..++..+.++... ....|... +...+.. . .......||++||+..| +..+++
T Consensus 95 ~~~~~~~r~v~~v~lPl~ate--DrvvGslD--i~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL--------~d~lvd 162 (423)
T COG1239 95 EWLPREKRKVPFVALPLGATE--DRLVGSLD--IEKALEEGPKAFQPGLLARANRGILYVDEVNLL--------DDHLVD 162 (423)
T ss_pred ccccccceecceecCCCccch--hhhccccC--HHHHHhcCccccCCcchhhccCCEEEEeccccc--------cHHHHH
Confidence 0001111100000 00122110 1222211 0 00111349999999988 346788
Q ss_pred hhhhhccCC---------------ceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCC-CHHHHHHHHHhhh
Q psy14500 151 MLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEP-DIEETISILRGLQ 207 (938)
Q Consensus 151 ~L~~~l~~~---------------~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p-~~~e~~~il~~~~ 207 (938)
.|+..++.| ++++|+|+|+.+ -.+-|.|++||.. |.+..| +.+++..|+++-.
T Consensus 163 ~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe----GeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~ 232 (423)
T COG1239 163 ALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE----GELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRL 232 (423)
T ss_pred HHHHHHHhCCceeeeCceeeccCccEEEEeecCccc----cccchhhHhhhcceeeccCCCCHHHHHHHHHHHH
Confidence 888888664 467999999985 3789999999985 887666 6788888876443
No 430
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=9.1e-09 Score=112.26 Aligned_cols=154 Identities=15% Similarity=0.154 Sum_probs=102.0
Q ss_pred HHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC---------------CCeEEEEehhhhh---
Q psy14500 38 DEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL---------------SKKILLLDIALLL--- 99 (938)
Q Consensus 38 ~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~---------------~~~~~~~~~~~l~--- 99 (938)
...+++... ...-++.+||+||+|+||+++|+++|+.+.+........ -..++.+......
T Consensus 8 ~~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~ 86 (342)
T PRK06964 8 DDWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEA 86 (342)
T ss_pred HHHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccc
Confidence 344455553 344445678999999999999999999987643100000 0123333222100
Q ss_pred --------------cCcc---c-cchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC
Q psy14500 100 --------------AGTK---Y-RGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR 158 (938)
Q Consensus 100 --------------~~~~---~-~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~ 158 (938)
.+.+ . ..-....++.+...+.. .++..|+|||++|.|. .++.|.|+..||.
T Consensus 87 ~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEE 158 (342)
T PRK06964 87 PGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALN--------VAAANALLKTLEE 158 (342)
T ss_pred cccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcC--------HHHHHHHHHHhcC
Confidence 0000 0 00112356666665542 2345699999999994 4688999999985
Q ss_pred --CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHh
Q psy14500 159 --GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRG 205 (938)
Q Consensus 159 --~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~ 205 (938)
.++++|.+|+.++ .+.|+++|||..+.|++|+.++..+.|..
T Consensus 159 Pp~~t~fiL~t~~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 159 PPPGTVFLLVSARID-----RLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CCcCcEEEEEECChh-----hCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 4688888988888 89999999999999999999988888764
No 431
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.95 E-value=2.3e-09 Score=123.04 Aligned_cols=151 Identities=17% Similarity=0.214 Sum_probs=94.9
Q ss_pred CCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCC------------------cCCCe
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------------LLSKK 89 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~------------------~~~~~ 89 (938)
..|++++|++..++.+...+. ...+++|+||||||||++++.++..+........ ....+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~--~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~P 266 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA--GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRP 266 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc--CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCC
Confidence 378899999998877766543 4478999999999999999999976532110000 01112
Q ss_pred EEEEehh----hhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC------
Q psy14500 90 ILLLDIA----LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------ 159 (938)
Q Consensus 90 ~~~~~~~----~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------ 159 (938)
+...+.+ .+..|+.. .-...+..+ + ..+|||||++.+ +..+++.|++.|+.+
T Consensus 267 f~~p~~s~s~~~~~ggg~~------~~pG~i~lA--~--~GvLfLDEi~e~--------~~~~~~~L~~~LE~~~v~i~r 328 (499)
T TIGR00368 267 FRSPHHSASKPALVGGGPI------PLPGEISLA--H--NGVLFLDELPEF--------KRSVLDALREPIEDGSISISR 328 (499)
T ss_pred ccccccccchhhhhCCccc------cchhhhhcc--C--CCeEecCChhhC--------CHHHHHHHHHHHHcCcEEEEe
Confidence 2111111 11111100 001122222 1 349999999988 346778888888654
Q ss_pred ---------ceEEEEecChhHHHH------------------hhhcCHHHHcccce-EEeeCCCHHH
Q psy14500 160 ---------ELHCIGATTLNEYRQ------------------YIEKDAAFERRFQK-ILVEEPDIEE 198 (938)
Q Consensus 160 ---------~i~vI~~tn~~~~~~------------------~~~ld~al~~Rf~~-i~~~~p~~~e 198 (938)
.+++|+++|+.++.. ...++.+|++||+. +.++.++..+
T Consensus 329 ~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 329 ASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred cCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 368999999753221 23689999999996 8888887653
No 432
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.95 E-value=2.1e-09 Score=97.58 Aligned_cols=66 Identities=24% Similarity=0.456 Sum_probs=58.0
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE 485 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~ 485 (938)
+..|+..|.+.++||.-|.+.+..+++..-.. ..|++|+ .+.|+||||||||.+++.||+.+|..+
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpL-VlSfHG~tGtGKn~v~~liA~~ly~~G 81 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPL-VLSFHGWTGTGKNFVSRLIAEHLYKSG 81 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCE-EEEeecCCCCcHHHHHHHHHHHHHhcc
Confidence 55788999999999999999999999877544 5788887 778999999999999999999997654
No 433
>KOG1969|consensus
Probab=98.93 E-value=1.3e-08 Score=115.47 Aligned_cols=173 Identities=18% Similarity=0.334 Sum_probs=116.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhH--HHH-HhCCCEEEEE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLT--EIV-RRKPYSLILL 535 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~--~~~-~~~~~~vl~l 535 (938)
.+||+||||-||||||..||+.. |..++.+|.++-.....+..-+- +.+. ..+ ....+.+|++
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt~~~v~~kI~-----------~avq~~s~l~adsrP~CLVi 393 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERTAPMVKEKIE-----------NAVQNHSVLDADSRPVCLVI 393 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---CceEEEecccccccHHHHHHHHH-----------HHHhhccccccCCCcceEEE
Confidence 57899999999999999999998 88999999988665544321110 0000 011 1234568999
Q ss_pred ccccccCHHHHHHHHHhhcC--CceecCCCc---------eeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHh
Q psy14500 536 DEIEKANSDVFNILLQILDD--GRLTDNRGR---------TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVK 604 (938)
Q Consensus 536 DEid~~~~~~~~~Ll~~le~--g~~~~~~g~---------~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~ 604 (938)
||||-.++.+.+.|+.++.. ...+-..+. .....+ =||+.+|.-
T Consensus 394 DEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~R-PIICICNdL------------------------ 448 (877)
T KOG1969|consen 394 DEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTR-PIICICNDL------------------------ 448 (877)
T ss_pred ecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccC-CEEEEecCc------------------------
Confidence 99999999999999999982 222211110 001122 257777752
Q ss_pred hccChHHh--hcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHH
Q psy14500 605 IYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSL 682 (938)
Q Consensus 605 ~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l 682 (938)
|.|+|. .-+-.++.|+|++...+. .++...|.+++ +.++..++..|++ +...||..|++.|
T Consensus 449 --YaPaLR~Lr~~A~ii~f~~p~~s~Lv-------~RL~~IC~rE~--mr~d~~aL~~L~e------l~~~DIRsCINtL 511 (877)
T KOG1969|consen 449 --YAPALRPLRPFAEIIAFVPPSQSRLV-------ERLNEICHREN--MRADSKALNALCE------LTQNDIRSCINTL 511 (877)
T ss_pred --cchhhhhcccceEEEEecCCChhHHH-------HHHHHHHhhhc--CCCCHHHHHHHHH------HhcchHHHHHHHH
Confidence 223322 223359999999987766 34556666667 7889999999998 4568999998888
Q ss_pred HHHHH
Q psy14500 683 SILLK 687 (938)
Q Consensus 683 ~~~l~ 687 (938)
+=+-.
T Consensus 512 QfLa~ 516 (877)
T KOG1969|consen 512 QFLAS 516 (877)
T ss_pred HHHHH
Confidence 76653
No 434
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.93 E-value=2.2e-08 Score=108.27 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=63.8
Q ss_pred eEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceEEEEecChhHHHHh--hhcCHHHHcccceEE
Q psy14500 126 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYRQY--IEKDAAFERRFQKIL 190 (938)
Q Consensus 126 ~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~vI~~tn~~~~~~~--~~ld~al~~Rf~~i~ 190 (938)
.|+-++|+.+. ..+.++.|+.+++.+ ..++|+++|+.+|..+ .+..++|++||..+.
T Consensus 238 Gi~~f~Ei~K~--------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~ 309 (361)
T smart00763 238 GILEFVEMFKA--------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVK 309 (361)
T ss_pred ceEEEeehhcC--------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEe
Confidence 36666676665 235666666666543 2468999999998754 466899999999999
Q ss_pred eeCC-CHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHh
Q psy14500 191 VEEP-DIEETISILRGLQKKYEVHHGVEITDPAIVAASEL 229 (938)
Q Consensus 191 ~~~p-~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~ 229 (938)
++.+ +.++-.+|.++.+..-. ..+..+.+.++..++..
T Consensus 310 vpY~l~~~~E~~Iy~k~~~~s~-~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 310 VPYCLRVSEEAQIYEKLLRNSD-LTEAHIAPHTLEMAALF 348 (361)
T ss_pred CCCcCCHHHHHHHHHHHhccCc-CcccccCchHHHHHHHH
Confidence 9888 56777788877665311 12455666666555443
No 435
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=3.9e-09 Score=115.19 Aligned_cols=140 Identities=18% Similarity=0.230 Sum_probs=90.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCC---ceEEecccc---ccch-hhhhhhcCCC-----CC----Cccccccchh
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEE---SIIRIDMSE---FIEK-HSISRLIGAP-----PG----YIGYEEGGYL 521 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~---~~~~~~~~~---~~~~-~~~~~l~g~~-----~~----~~g~~~~~~l 521 (938)
+.+||+||+|+|||++|+.+|+.+..... ...+-.|.. +... |.....+... .| .++.+..+.+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l 101 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREI 101 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHH
Confidence 47999999999999999999999853211 001111211 1000 0000011100 01 1333334555
Q ss_pred HHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHH
Q psy14500 522 TEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKL 597 (938)
Q Consensus 522 ~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~ 597 (938)
...+.. +.+.|+++|+++.+++..++.|++.||+ ...++.||++|+...
T Consensus 102 ~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEe-----------p~~~~~~Ilvth~~~---------------- 154 (325)
T PRK08699 102 IDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEE-----------PPPQVVFLLVSHAAD---------------- 154 (325)
T ss_pred HHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHh-----------CcCCCEEEEEeCChH----------------
Confidence 555543 4468999999999999999999999997 234466777776532
Q ss_pred HHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHH
Q psy14500 598 AVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 633 (938)
Q Consensus 598 ~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~ 633 (938)
.+.+.+.+|| ..++|+|++.+++...+
T Consensus 155 --------~ll~ti~SRc-~~~~~~~~~~~~~~~~L 181 (325)
T PRK08699 155 --------KVLPTIKSRC-RKMVLPAPSHEEALAYL 181 (325)
T ss_pred --------hChHHHHHHh-hhhcCCCCCHHHHHHHH
Confidence 3567899999 59999999999887764
No 436
>PRK08116 hypothetical protein; Validated
Probab=98.92 E-value=8.5e-09 Score=109.79 Aligned_cols=108 Identities=17% Similarity=0.355 Sum_probs=73.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
+++|+|+||||||+||.+|++.+...+.+++.++.+++..... ..+... +......+...+... .+|+|||+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~--~~~~~~----~~~~~~~~~~~l~~~--dlLviDDl 187 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIK--STYKSS----GKEDENEIIRSLVNA--DLLILDDL 187 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--HHHhcc----ccccHHHHHHHhcCC--CEEEEecc
Confidence 5999999999999999999999976677888888777654311 111110 000111222333333 59999999
Q ss_pred --cccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhh
Q psy14500 539 --EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 584 (938)
Q Consensus 539 --d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 584 (938)
++.....++.|+.+++.. + .....+|+|||..+..+
T Consensus 188 g~e~~t~~~~~~l~~iin~r-~---------~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSR-Y---------RKGLPTIVTTNLSLEEL 225 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHH-H---------HCCCCEEEECCCCHHHH
Confidence 667888999999999852 1 12234889999987655
No 437
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.91 E-value=1e-08 Score=122.06 Aligned_cols=162 Identities=14% Similarity=0.110 Sum_probs=101.9
Q ss_pred CccccHHHHHHHHHHHhcCC---------------------CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeE
Q psy14500 32 PVIGRDDEIRRAIQVLQRRS---------------------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKI 90 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~~~---------------------~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~ 90 (938)
.|+|++.+.+.++-.|-++. ..||||+|+||||||++|+++++..++.. ...+...
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~---ytsG~~~ 527 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI---YTSGKSS 527 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc---cCCCCCC
Confidence 78999998888877664322 12799999999999999999998654322 0112222
Q ss_pred EEEehhhhhc-CccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC----------
Q psy14500 91 LLLDIALLLA-GTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------- 159 (938)
Q Consensus 91 ~~~~~~~l~~-~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~---------- 159 (938)
..+.+..... .....|++... ...+.. ....+++|||++.|. ...+..|.+.|+++
T Consensus 528 s~vgLTa~~~~~d~~tG~~~le-~GaLvl----AdgGtL~IDEidkms--------~~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 528 SSVGLTASIKFNESDNGRAMIQ-PGAVVL----ANGGVCCIDELDKCH--------NESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred ccccccchhhhcccccCccccc-CCcEEE----cCCCeEEecchhhCC--------HHHHHHHHHHHhCCEEEEecCCcc
Confidence 2222222110 00001211100 001111 113399999999993 35566777777654
Q ss_pred -----ceEEEEecChhHHH--------HhhhcCHHHHcccce--EEeeCCCHHHHHHHHHhhhhh
Q psy14500 160 -----ELHCIGATTLNEYR--------QYIEKDAAFERRFQK--ILVEEPDIEETISILRGLQKK 209 (938)
Q Consensus 160 -----~i~vI~~tn~~~~~--------~~~~ld~al~~Rf~~--i~~~~p~~~e~~~il~~~~~~ 209 (938)
.+.+|+|+|+..-+ ..+.+++++++||+. +-+..|+.+.-..|..++++.
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~ 659 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKD 659 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHh
Confidence 45799999985322 346789999999985 668888888877887777654
No 438
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=5.3e-09 Score=107.91 Aligned_cols=136 Identities=15% Similarity=0.099 Sum_probs=89.6
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc---ccch-hhhhhhcCCCCCCccccccchhHHHHHh-----
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE---FIEK-HSISRLIGAPPGYIGYEEGGYLTEIVRR----- 527 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~---~~~~-~~~~~l~g~~~~~~g~~~~~~l~~~~~~----- 527 (938)
.+.+||+||+|+||..+|.++|+.+......-.+-.|.. +... +..-..+......++.++.+.+...+..
T Consensus 7 ~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~ 86 (261)
T PRK05818 7 THPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVES 86 (261)
T ss_pred CcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhc
Confidence 347999999999999999999999854332111111111 1100 1000011111112344444555544422
Q ss_pred CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhcc
Q psy14500 528 KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYF 607 (938)
Q Consensus 528 ~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 607 (938)
+.+.|++|+++|+|+..+.|+||+.||+ +..+++||++|+... .+
T Consensus 87 ~~~KV~II~~ae~m~~~AaNaLLK~LEE-----------Pp~~t~fiLit~~~~------------------------~l 131 (261)
T PRK05818 87 NGKKIYIIYGIEKLNKQSANSLLKLIEE-----------PPKNTYGIFTTRNEN------------------------NI 131 (261)
T ss_pred CCCEEEEeccHhhhCHHHHHHHHHhhcC-----------CCCCeEEEEEECChH------------------------hC
Confidence 3468999999999999999999999998 788999999998643 36
Q ss_pred ChHHhhcCCeEEEccCCCHHH
Q psy14500 608 RPEFINRIDDIIVFRYLNRKN 628 (938)
Q Consensus 608 ~~~l~~R~~~~i~f~~l~~e~ 628 (938)
.|.++|||. .+.|+++.+..
T Consensus 132 LpTI~SRCq-~~~~~~~~~~~ 151 (261)
T PRK05818 132 LNTILSRCV-QYVVLSKEKKV 151 (261)
T ss_pred chHhhhhee-eeecCChhhhc
Confidence 789999994 78888874433
No 439
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.89 E-value=7.7e-09 Score=113.65 Aligned_cols=179 Identities=16% Similarity=0.238 Sum_probs=116.7
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHhccCC--CceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEE
Q psy14500 455 RPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSL 532 (938)
Q Consensus 455 ~~~~~iLl~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~v 532 (938)
.+.++++|+||+|+|||+|++++++.....+ ..++++....|......... . .....+.... .-.+
T Consensus 111 ~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~-~--------~~~~~Fk~~y---~~dl 178 (408)
T COG0593 111 GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALR-D--------NEMEKFKEKY---SLDL 178 (408)
T ss_pred CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHH-h--------hhHHHHHHhh---ccCe
Confidence 3456799999999999999999999885433 35565555555433211100 0 0011122222 3359
Q ss_pred EEEccccccCH--HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChH
Q psy14500 533 ILLDEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPE 610 (938)
Q Consensus 533 l~lDEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 610 (938)
|+||+|+.+.. ..|..|+..+.. +...+..+|+|+...+..+.. +.|.
T Consensus 179 llIDDiq~l~gk~~~qeefFh~FN~----------l~~~~kqIvltsdr~P~~l~~--------------------~~~r 228 (408)
T COG0593 179 LLIDDIQFLAGKERTQEEFFHTFNA----------LLENGKQIVLTSDRPPKELNG--------------------LEDR 228 (408)
T ss_pred eeechHhHhcCChhHHHHHHHHHHH----------HHhcCCEEEEEcCCCchhhcc--------------------ccHH
Confidence 99999997653 456666666653 111122688899887776533 6688
Q ss_pred HhhcCCe--EEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHH
Q psy14500 611 FINRIDD--IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKK 688 (938)
Q Consensus 611 l~~R~~~--~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~ 688 (938)
|.+|+.. ++...|++.+....|+.+ .....+ +.++++++.+++.... -.+|++.|. +.++...
T Consensus 229 L~SR~~~Gl~~~I~~Pd~e~r~aiL~k-------ka~~~~--~~i~~ev~~~la~~~~---~nvReLega---L~~l~~~ 293 (408)
T COG0593 229 LRSRLEWGLVVEIEPPDDETRLAILRK-------KAEDRG--IEIPDEVLEFLAKRLD---RNVRELEGA---LNRLDAF 293 (408)
T ss_pred HHHHHhceeEEeeCCCCHHHHHHHHHH-------HHHhcC--CCCCHHHHHHHHHHhh---ccHHHHHHH---HHHHHHH
Confidence 9999965 899999999999999665 333344 8899999999998432 346777777 5555543
Q ss_pred hc
Q psy14500 689 IH 690 (938)
Q Consensus 689 ~~ 690 (938)
..
T Consensus 294 a~ 295 (408)
T COG0593 294 AL 295 (408)
T ss_pred HH
Confidence 33
No 440
>KOG2680|consensus
Probab=98.88 E-value=1.5e-08 Score=103.05 Aligned_cols=102 Identities=21% Similarity=0.387 Sum_probs=77.9
Q ss_pred CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccCh
Q psy14500 530 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 609 (938)
Q Consensus 530 ~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 609 (938)
++||||||++.++-+.+..|...+|+ ++. .++|++||.+...+......+ -..++-
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~-----------d~~-PiiimaTNrgit~iRGTn~~S------------phGiP~ 344 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALEN-----------DMA-PIIIMATNRGITRIRGTNYRS------------PHGIPI 344 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhh-----------ccC-cEEEEEcCCceEEeecCCCCC------------CCCCcH
Confidence 69999999999999999999999996 222 367889998765443211110 235788
Q ss_pred HHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 610 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 610 ~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
+|++|. .+|...|++++++.+|+... +...+ +.+++++++.|...+
T Consensus 345 D~lDR~-lII~t~py~~~d~~~IL~iR-------c~EEd--v~m~~~A~d~Lt~i~ 390 (454)
T KOG2680|consen 345 DLLDRM-LIISTQPYTEEDIKKILRIR-------CQEED--VEMNPDALDLLTKIG 390 (454)
T ss_pred HHhhhh-heeecccCcHHHHHHHHHhh-------hhhhc--cccCHHHHHHHHHhh
Confidence 999999 69999999999999995543 33344 788999999998754
No 441
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=2.1e-08 Score=117.46 Aligned_cols=219 Identities=14% Similarity=0.177 Sum_probs=115.4
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceE----Eeccccccchhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESII----RIDMSEFIEKHSI 502 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~----~~~~~~~~~~~~~ 502 (938)
+.++||++.++.+..++.....+ ..+...++|+||||||||++++++|+.+. ..+. .+++....+....
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~----~~~~~illL~GP~GsGKTTl~~~la~~l~---~~~~Ew~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLE----NAPKRILLITGPSGCGKSTTIKILSKELG---IQVQEWSNPTLPDFQKNDHKV 156 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc----cCCCcEEEEECCCCCCHHHHHHHHHHHhh---hHHHHHhhhhhhccccccccc
Confidence 56889999999999888754432 22223589999999999999999998872 1111 1111111110000
Q ss_pred hhhcCCCCCCccccccchhHHHHH-------------hCCCEEEEEccccccC----HHHHHHHH-HhhcCCceecCCCc
Q psy14500 503 SRLIGAPPGYIGYEEGGYLTEIVR-------------RKPYSLILLDEIEKAN----SDVFNILL-QILDDGRLTDNRGR 564 (938)
Q Consensus 503 ~~l~g~~~~~~g~~~~~~l~~~~~-------------~~~~~vl~lDEid~~~----~~~~~~Ll-~~le~g~~~~~~g~ 564 (938)
...++..-... ......+..++. .....||||||++.+. ..+++.|+ ...+.+.
T Consensus 157 ~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~------- 228 (637)
T TIGR00602 157 TLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGR------- 228 (637)
T ss_pred chhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCC-------
Confidence 00000000000 001111222211 1235699999995443 33444444 3444322
Q ss_pred eeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHHHHH
Q psy14500 565 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILKN 642 (938)
Q Consensus 565 ~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~~~~ 642 (938)
-.+|+++|......-.. ..........+.+++++ |+ .+|.|+|++...+.+.+...+..-..
T Consensus 229 -----~pLI~I~TE~~~~~~~~----------~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~ 292 (637)
T TIGR00602 229 -----CPLVFIITESLEGDNNQ----------RRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAK 292 (637)
T ss_pred -----ceEEEEecCCccccccc----------cccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhh
Confidence 12334444222210000 00000011224588887 55 48999999999999888777765322
Q ss_pred HHHccCCeEEE-cHHHHHHHHhhcccccccccccccchHHHHHH
Q psy14500 643 KLLKMNMDLKI-SKAALKKISNIGFDLIYGARDVHGCKKSLSIL 685 (938)
Q Consensus 643 ~~~~~~~~l~~-~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~ 685 (938)
.+. ....+ ++++++.|+. ...||+...+..|+-+
T Consensus 293 ~~~---~~~~~p~~~~l~~I~~------~s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 293 KNG---EKIKVPKKTSVELLCQ------GCSGDIRSAINSLQFS 327 (637)
T ss_pred ccc---cccccCCHHHHHHHHH------hCCChHHHHHHHHHHH
Confidence 111 11223 5788888877 4468988887777654
No 442
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.84 E-value=5.5e-08 Score=114.94 Aligned_cols=195 Identities=16% Similarity=0.113 Sum_probs=120.2
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchH--HHHHH--------HHHHH
Q psy14500 49 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF--EDRLK--------KILKE 118 (938)
Q Consensus 49 ~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~--~~~l~--------~~~~~ 118 (938)
.+..++|||.|+||||||++|+++++.+... .++..+..+... ....|.. +..+. .++..
T Consensus 13 ~p~~g~vLl~G~~GtgKs~lar~l~~~~~~~--------~pfv~i~~~~t~--d~L~G~idl~~~~~~g~~~~~~G~L~~ 82 (589)
T TIGR02031 13 DPSLGGVAIRARAGTGKTALARALAEILPPI--------MPFVELPLGVTE--DRLIGGIDVEESLAGGQRVTQPGLLDE 82 (589)
T ss_pred CCCcceEEEEcCCCcHHHHHHHHHHHhCCcC--------CCeEecCcccch--hhcccchhhhhhhhcCcccCCCCCeee
Confidence 4557899999999999999999999976321 134433321110 1111211 00000 01111
Q ss_pred HHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC---------------ceEEEEecChhHHHHhhhcCHHHH
Q psy14500 119 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFE 183 (938)
Q Consensus 119 a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~---------------~i~vI~~tn~~~~~~~~~ld~al~ 183 (938)
....+|||||++.+. ...++.|...|+.+ .+.+|+|+|+.+.. -.+.+++.
T Consensus 83 ----A~~GvL~lDEi~rl~--------~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~--g~L~~~Ll 148 (589)
T TIGR02031 83 ----APRGVLYVDMANLLD--------DGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG--GGLPDHLL 148 (589)
T ss_pred ----CCCCcEeccchhhCC--------HHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc--CCCCHHHH
Confidence 112389999999993 46777888888654 36789999886522 26899999
Q ss_pred cccce-EEee-CCCHHHHHHHHHhhhhh-------------------hhcccCCCCCHHHHHHHHHhhhhccccCCCchh
Q psy14500 184 RRFQK-ILVE-EPDIEETISILRGLQKK-------------------YEVHHGVEITDPAIVAASELSYRYISDRFMPDK 242 (938)
Q Consensus 184 ~Rf~~-i~~~-~p~~~e~~~il~~~~~~-------------------~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 242 (938)
+||.. |.+. .++.++|.+|++..... ......+.++++++.+++.++-..- ...++.
T Consensus 149 dRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~g--v~s~Ra 226 (589)
T TIGR02031 149 DRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLG--ISGHRA 226 (589)
T ss_pred HhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcC--CCCccH
Confidence 99986 5544 45777788888765421 1123457788888888888764322 223566
Q ss_pred hhhHHHHHHHHHHHhhc--CchhHHHHHH
Q psy14500 243 AIDLIDEAAAKIKIEID--SKPEIMDKLE 269 (938)
Q Consensus 243 a~~ll~~a~~~~~~~~~--~~p~~l~~~~ 269 (938)
.+.++.-|.+.+.+... ..++++...-
T Consensus 227 ~i~~~r~ArA~Aal~gr~~V~~~Dv~~a~ 255 (589)
T TIGR02031 227 DLFAVRAAKAHAALHGRTEVTEEDLKLAV 255 (589)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 77777776666655443 3555554433
No 443
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.81 E-value=5.1e-09 Score=104.33 Aligned_cols=108 Identities=22% Similarity=0.380 Sum_probs=72.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
+++|+||||||||++|.++++.+...+.++..++++++...-... +. ......+...+...+ +|+|||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~--------~~-~~~~~~~~~~l~~~d--lLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS--------RS-DGSYEELLKRLKRVD--LLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC--------HC-CTTHCHHHHHHHTSS--CEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc--------cc-ccchhhhcCcccccc--Eeccccc
Confidence 799999999999999999999998888899999888876542211 10 111122334455554 9999999
Q ss_pred cc--cCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhh
Q psy14500 539 EK--ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 588 (938)
Q Consensus 539 d~--~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~ 588 (938)
.. ..+...+.|+++++.. +.+.-.|+|||.....|.+..
T Consensus 118 G~~~~~~~~~~~l~~ii~~R-----------~~~~~tIiTSN~~~~~l~~~~ 158 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDER-----------YERKPTIITSNLSPSELEEVL 158 (178)
T ss_dssp TSS---HHHHHCTHHHHHHH-----------HHT-EEEEEESS-HHHHHT--
T ss_pred ceeeecccccccchhhhhHh-----------hcccCeEeeCCCchhhHhhcc
Confidence 64 4567788889999851 122246789999888776644
No 444
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.80 E-value=9.3e-09 Score=109.52 Aligned_cols=149 Identities=17% Similarity=0.305 Sum_probs=90.4
Q ss_pred HHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH-
Q psy14500 42 RAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS- 120 (938)
Q Consensus 42 ~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~- 120 (938)
.+++.+-.. ..++||+||+|||||++++.+...+... ..-...++.+... ....++.+++...
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~T--------ts~~~q~~ie~~l~ 87 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQT--------TSNQLQKIIESKLE 87 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTH--------HHHHHHHCCCTTEC
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCC--------CHHHHHHHHhhcEE
Confidence 344433333 5799999999999999999877654211 1122334443221 1112333322211
Q ss_pred ---------hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--------------ceEEEEecChhHHHHhhh
Q psy14500 121 ---------NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--------------ELHCIGATTLNEYRQYIE 177 (938)
Q Consensus 121 ---------~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--------------~i~vI~~tn~~~~~~~~~ 177 (938)
..++..|+||||++. +..+..|.+...+.|++.++.+ ++.+|+|+++.. ....
T Consensus 88 k~~~~~~gP~~~k~lv~fiDDlN~--p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~--Gr~~ 163 (272)
T PF12775_consen 88 KRRGRVYGPPGGKKLVLFIDDLNM--PQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG--GRNP 163 (272)
T ss_dssp ECTTEEEEEESSSEEEEEEETTT---S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--T--S
T ss_pred cCCCCCCCCCCCcEEEEEecccCC--CCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--CCCC
Confidence 013357999999994 4445667777788888888643 477899998753 2346
Q ss_pred cCHHHHcccceEEeeCCCHHHHHHHHHhhhhhh
Q psy14500 178 KDAAFERRFQKILVEEPDIEETISILRGLQKKY 210 (938)
Q Consensus 178 ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~ 210 (938)
+++.+.|.|..+.++.|+.+....|...++..+
T Consensus 164 is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 164 ISPRFLRHFNILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp HHHHHHTTEEEEE----TCCHHHHHHHHHHHHH
T ss_pred CChHHhhheEEEEecCCChHHHHHHHHHHHhhh
Confidence 899999999999999999999999998777653
No 445
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.80 E-value=5.5e-08 Score=106.24 Aligned_cols=153 Identities=20% Similarity=0.225 Sum_probs=98.9
Q ss_pred HHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCC-C---CC-----------cCCCeEEEEehhhh--hc
Q psy14500 38 DEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEV-P---NS-----------LLSKKILLLDIALL--LA 100 (938)
Q Consensus 38 ~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~-p---~~-----------~~~~~~~~~~~~~l--~~ 100 (938)
..-+++... ...-++.+||+||+|+|||++|+.+|+.+.+... + .. ..-..++.++...- ..
T Consensus 8 ~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~ 86 (325)
T PRK08699 8 EQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPEN 86 (325)
T ss_pred HHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccc
Confidence 344555544 2333445889999999999999999999865321 0 00 00123444543210 00
Q ss_pred CccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--ceEEEEecChhHHHHh
Q psy14500 101 GTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQY 175 (938)
Q Consensus 101 ~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~i~vI~~tn~~~~~~~ 175 (938)
+.+...-....++.+...+.. .++..|++||+++.|. ...++.|+..++.. .+.+|.+|+.++
T Consensus 87 g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld--------~~a~naLLk~LEep~~~~~~Ilvth~~~---- 154 (325)
T PRK08699 87 GRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMN--------LQAANSLLKVLEEPPPQVVFLLVSHAAD---- 154 (325)
T ss_pred cccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCC--------HHHHHHHHHHHHhCcCCCEEEEEeCChH----
Confidence 000000112356666666652 2345688999999993 46677888888754 567777888777
Q ss_pred hhcCHHHHcccceEEeeCCCHHHHHHHHH
Q psy14500 176 IEKDAAFERRFQKILVEEPDIEETISILR 204 (938)
Q Consensus 176 ~~ld~al~~Rf~~i~~~~p~~~e~~~il~ 204 (938)
.+.+++.+||..+.|++|+.++....|.
T Consensus 155 -~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 155 -KVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred -hChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 7889999999999999999998777775
No 446
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.79 E-value=4.8e-08 Score=114.88 Aligned_cols=119 Identities=13% Similarity=0.185 Sum_probs=79.3
Q ss_pred eEEEEeCccccccCCCCCCccchhhhhhhhccCC-----------------------ceEEEEecChhHHHHhhhcCHHH
Q psy14500 126 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-----------------------ELHCIGATTLNEYRQYIEKDAAF 182 (938)
Q Consensus 126 ~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~i~vI~~tn~~~~~~~~~ld~al 182 (938)
.+|||||++.|. ...+..|+..|+.+ ++++|+++|+.. ...++|.|
T Consensus 228 GtL~LDei~~L~--------~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l---l~~~dpdL 296 (637)
T PRK13765 228 GVLFIDEINTLD--------LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA---LENMHPAL 296 (637)
T ss_pred cEEEEeChHhCC--------HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH---HHhhhHHH
Confidence 489999999883 34666777776432 457899999864 23569999
Q ss_pred Hcccce----EEeeCC---CHHHHHHHHHhhhhhhhcc-cCCCCCHHHHHHHHHhhhhccccCC---C-chhhhhHHHHH
Q psy14500 183 ERRFQK----ILVEEP---DIEETISILRGLQKKYEVH-HGVEITDPAIVAASELSYRYISDRF---M-PDKAIDLIDEA 250 (938)
Q Consensus 183 ~~Rf~~----i~~~~p---~~~e~~~il~~~~~~~~~~-~~~~i~~~~l~~~~~~s~~~~~~~~---~-p~~a~~ll~~a 250 (938)
.+||.. +.|..- +.+.+..+++.+....... .-..++++++..+++.+.|..+.+. + .+...+++..+
T Consensus 297 ~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~a 376 (637)
T PRK13765 297 RSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRVA 376 (637)
T ss_pred HHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHHH
Confidence 999962 444432 3555666666555444332 2347999999999999888776654 2 45666677666
Q ss_pred HHHHH
Q psy14500 251 AAKIK 255 (938)
Q Consensus 251 ~~~~~ 255 (938)
...++
T Consensus 377 ~~~a~ 381 (637)
T PRK13765 377 GDIAR 381 (637)
T ss_pred HHHHH
Confidence 55444
No 447
>PRK08181 transposase; Validated
Probab=98.78 E-value=2.4e-08 Score=105.62 Aligned_cols=108 Identities=15% Similarity=0.363 Sum_probs=74.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
+++|+||||||||+||.++++.+...+..+..+.+.++......... .. ........+.. ..+|+|||+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~--------~~-~~~~~l~~l~~--~dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARR--------EL-QLESAIAKLDK--FDLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHh--------CC-cHHHHHHHHhc--CCEEEEecc
Confidence 79999999999999999999998777888888888776654222100 00 00112223333 359999999
Q ss_pred cccC--HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhh
Q psy14500 539 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 588 (938)
Q Consensus 539 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~ 588 (938)
+..+ +..++.|+++++. ...+.-+|+|||.+...|...+
T Consensus 177 g~~~~~~~~~~~Lf~lin~-----------R~~~~s~IiTSN~~~~~w~~~~ 217 (269)
T PRK08181 177 AYVTKDQAETSVLFELISA-----------RYERRSILITANQPFGEWNRVF 217 (269)
T ss_pred ccccCCHHHHHHHHHHHHH-----------HHhCCCEEEEcCCCHHHHHHhc
Confidence 8654 5566789999984 1112348899999988876643
No 448
>PRK06526 transposase; Provisional
Probab=98.78 E-value=6.3e-09 Score=109.51 Aligned_cols=108 Identities=20% Similarity=0.393 Sum_probs=74.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHH-HhCCCEEEEEcc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV-RRKPYSLILLDE 537 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~-~~~~~~vl~lDE 537 (938)
+++|+||||||||++|.+|+..+...+..+..+.+.++......... . +.+...+ ......+|+|||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~-----------~-~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH-----------A-GRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh-----------c-CcHHHHHHHhccCCEEEEcc
Confidence 79999999999999999999988776777666666655443221110 0 1111222 223457999999
Q ss_pred ccccC--HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhc
Q psy14500 538 IEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 589 (938)
Q Consensus 538 id~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~ 589 (938)
++..+ +..++.|+++++. .+.+..+|+|||.+...|.+.++
T Consensus 168 ~g~~~~~~~~~~~L~~li~~-----------r~~~~s~IitSn~~~~~w~~~~~ 210 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSS-----------RYERASLIVTSNKPFGRWGEVFG 210 (254)
T ss_pred cccCCCCHHHHHHHHHHHHH-----------HHhcCCEEEEcCCCHHHHHHHcC
Confidence 99764 7778889999874 12223488999999988876554
No 449
>KOG1970|consensus
Probab=98.78 E-value=9e-08 Score=105.66 Aligned_cols=214 Identities=17% Similarity=0.167 Sum_probs=127.8
Q ss_pred HHhhhHHHHHhcCCCCCccccHHHHHHHHHHHh-----cCCCC--CcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14500 16 KYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ-----RRSKN--NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 88 (938)
Q Consensus 16 ~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~-----~~~~~--~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~ 88 (938)
.-+..|+++|+|.+.+++-=+.+-+.++..||. .+..+ -+||+||+||||||.++.|++++ +.
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel----------g~ 136 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL----------GY 136 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh----------Cc
Confidence 345689999999999999888888888888887 33333 36788999999999999999998 44
Q ss_pred eEEEEe-------hhhhhcCcc-----ccchHHHHHHHHHHHHH-----------hcCCCeEEEEeCccccccCCCCCCc
Q psy14500 89 KILLLD-------IALLLAGTK-----YRGEFEDRLKKILKEIS-----------NNQKDIIIFIDELHTMIGTGKVEGS 145 (938)
Q Consensus 89 ~~~~~~-------~~~l~~~~~-----~~g~~~~~l~~~~~~a~-----------~~~~~~iL~iDEid~l~~~~~~~~~ 145 (938)
.+++-. ...+...+. +..++. .++..+..+. ....+.+|+|||+-..+... ..
T Consensus 137 ~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~-~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d---~~ 212 (634)
T KOG1970|consen 137 QLIEWSNPINLKEPENLHNETSFLMFPYQSQLA-VFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD---DS 212 (634)
T ss_pred eeeeecCCccccccccccccchhcccchhhHHH-HHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh---hH
Confidence 444322 111111111 111111 2233333331 11335689999998776532 12
Q ss_pred cchhhhhhhhccCCce--EEEEe-----cChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhc-ccCCC
Q psy14500 146 IDAGNMLKPELSRGEL--HCIGA-----TTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEV-HHGVE 217 (938)
Q Consensus 146 ~~~~~~L~~~l~~~~i--~vI~~-----tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~-~~~~~ 217 (938)
....+.|..+...+.+ ++|.| .+..+++.+. .|-...-|+..|.|.+....-..+.|..++..... ..+..
T Consensus 213 ~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~-~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k 291 (634)
T KOG1970|consen 213 ETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFP-KDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIK 291 (634)
T ss_pred HHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhch-hhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCc
Confidence 3345566655555533 33222 2223333221 22223337777999999998888888877765322 12233
Q ss_pred CC-HHHHHHHHHhhhhccccCCCchhhhhHHHHH
Q psy14500 218 IT-DPAIVAASELSYRYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 218 i~-~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 250 (938)
++ ...+..++.-++|++ +.|+.-|...
T Consensus 292 ~~~~~~v~~i~~~s~GDI------RsAInsLQls 319 (634)
T KOG1970|consen 292 VPDTAEVELICQGSGGDI------RSAINSLQLS 319 (634)
T ss_pred CchhHHHHHHHHhcCccH------HHHHhHhhhh
Confidence 33 345677778888888 6666655443
No 450
>KOG1942|consensus
Probab=98.76 E-value=2.2e-07 Score=94.36 Aligned_cols=114 Identities=20% Similarity=0.170 Sum_probs=81.4
Q ss_pred CeEEEEeCccccccCCCCCCccchhhhhhhhccCC-ceEEEEecChhHH--------HHhhhcCHHHHcccceEEeeCCC
Q psy14500 125 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLNEY--------RQYIEKDAAFERRFQKILVEEPD 195 (938)
Q Consensus 125 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-~i~vI~~tn~~~~--------~~~~~ld~al~~Rf~~i~~~~p~ 195 (938)
|.||||||+|.| +.+....|...+++. .-++|+++|+-.. ..-+.+++.+++|+-.|..-+++
T Consensus 297 PGVLFIDEVhML--------DiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~ 368 (456)
T KOG1942|consen 297 PGVLFIDEVHML--------DIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYD 368 (456)
T ss_pred CcceEeeehhhh--------hhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCC
Confidence 569999999998 446666777777754 3467777775321 11246889999999999999999
Q ss_pred HHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHH
Q psy14500 196 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 196 ~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 255 (938)
.++..+|++.-... +++.++++++..++.+..+ ..=+.+++++--+...++
T Consensus 369 ~~e~r~Ii~~Ra~~----E~l~~~e~a~~~l~~~gt~-----tsLRy~vqLl~p~~~~ak 419 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQV----EGLQVEEEALDLLAEIGTS-----TSLRYAVQLLTPASILAK 419 (456)
T ss_pred HHHHHHHHHHHHhh----hcceecHHHHHHHHhhccc-----hhHHHHHHhcCHHHHHHH
Confidence 99999999765543 6889999999998886432 122556666654444443
No 451
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.76 E-value=1.1e-07 Score=110.40 Aligned_cols=182 Identities=16% Similarity=0.216 Sum_probs=116.4
Q ss_pred CCCCCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc---
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT--- 102 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~--- 102 (938)
..+..++|....++.+...+.. ....+++|+|++||||+++|++++...... ..+++.++|..+....
T Consensus 136 ~~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~v~v~c~~~~~~~~~~ 208 (445)
T TIGR02915 136 TALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDRK-------DKRFVAINCAAIPENLLES 208 (445)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCcC-------CCCeEEEECCCCChHHHHH
Confidence 3567899999888888776653 456789999999999999999999765332 4568888886542100
Q ss_pred --------cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ce
Q psy14500 103 --------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------EL 161 (938)
Q Consensus 103 --------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i 161 (938)
.+.|... .....+.. ..+.+|||||++.|. ...+..|..+++.+ ++
T Consensus 209 ~lfg~~~~~~~~~~~-~~~g~~~~----a~~gtl~l~~i~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~ 275 (445)
T TIGR02915 209 ELFGYEKGAFTGAVK-QTLGKIEY----AHGGTLFLDEIGDLP--------LNLQAKLLRFLQERVIERLGGREEIPVDV 275 (445)
T ss_pred HhcCCCCCCcCCCcc-CCCCceeE----CCCCEEEEechhhCC--------HHHHHHHHHHHhhCeEEeCCCCceeeece
Confidence 0000000 00011111 123489999999993 46677787777543 46
Q ss_pred EEEEecChhHHH--HhhhcCHHHHcccceEEeeCCCHHHHH----HHHHhhhhhhhcccC---CCCCHHHHHHHHHh
Q psy14500 162 HCIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG---VEITDPAIVAASEL 229 (938)
Q Consensus 162 ~vI~~tn~~~~~--~~~~ld~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 229 (938)
++|++|+.+--. ..-.+.+.|..|+..+.+..|+..+|. .++++++.++....+ ..++++++..+...
T Consensus 276 rii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (445)
T TIGR02915 276 RIVCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAH 352 (445)
T ss_pred EEEEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhC
Confidence 889998875311 112456778888887666666665555 455666666544333 45788887776554
No 452
>PRK12377 putative replication protein; Provisional
Probab=98.76 E-value=2.1e-08 Score=104.66 Aligned_cols=143 Identities=17% Similarity=0.245 Sum_probs=82.4
Q ss_pred HhcCCCCCccc----cHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14500 25 ARLGKLDPVIG----RDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 98 (938)
Q Consensus 25 ~~~~~~~~lvG----~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l 98 (938)
++..+|+.+.. +..++..+..++.. ....+++|+||||||||+||.++++.+... +..+..++...+
T Consensus 68 ~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~-------g~~v~~i~~~~l 140 (248)
T PRK12377 68 HRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAK-------GRSVIVVTVPDV 140 (248)
T ss_pred cccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEHHHH
Confidence 45557888763 33344444443332 234689999999999999999999998643 455666666655
Q ss_pred hcCcc--c-cchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC---CceEEEEecChhHH
Q psy14500 99 LAGTK--Y-RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---GELHCIGATTLNEY 172 (938)
Q Consensus 99 ~~~~~--~-~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---~~i~vI~~tn~~~~ 172 (938)
...-+ + .+. ....++..+... -+|+|||+.....+ ....+.|..+++. ....+|.|||...-
T Consensus 141 ~~~l~~~~~~~~---~~~~~l~~l~~~---dLLiIDDlg~~~~s------~~~~~~l~~ii~~R~~~~~ptiitSNl~~~ 208 (248)
T PRK12377 141 MSRLHESYDNGQ---SGEKFLQELCKV---DLLVLDEIGIQRET------KNEQVVLNQIIDRRTASMRSVGMLTNLNHE 208 (248)
T ss_pred HHHHHHHHhccc---hHHHHHHHhcCC---CEEEEcCCCCCCCC------HHHHHHHHHHHHHHHhcCCCEEEEcCCCHH
Confidence 43111 0 011 122344444433 39999999765321 2234456666642 23566777885321
Q ss_pred HHhhhcCHHHHccc
Q psy14500 173 RQYIEKDAAFERRF 186 (938)
Q Consensus 173 ~~~~~ld~al~~Rf 186 (938)
.-.-.+..++.+|+
T Consensus 209 ~l~~~~~~ri~dRl 222 (248)
T PRK12377 209 AMSTLLGERVMDRM 222 (248)
T ss_pred HHHHHhhHHHHHHH
Confidence 11113456677766
No 453
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.75 E-value=1.3e-07 Score=101.63 Aligned_cols=141 Identities=16% Similarity=0.173 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC--------Cc--eEEeccccccchhhhhh
Q psy14500 435 AISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--------ES--IIRIDMSEFIEKHSISR 504 (938)
Q Consensus 435 ~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~--------~~--~~~~~~~~~~~~~~~~~ 504 (938)
+++.+.+.++..+. .+.+||+|+.|+||+++|+.+++.++... .| +..++..
T Consensus 4 ~~~~l~~~i~~~~l--------~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---------- 65 (299)
T PRK07132 4 WIKFLDNSATQNKI--------SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---------- 65 (299)
T ss_pred HHHHHHHHHHhCCC--------CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----------
Confidence 46677777765443 25789999999999999999999884321 01 1111100
Q ss_pred hcCCCCCCccccccchhHHHHH-----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCC
Q psy14500 505 LIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 579 (938)
Q Consensus 505 l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 579 (938)
| +.++.++.+.+...+. .+++.|++||++|+++..++|+||+.||+ ++.+++||++|+.
T Consensus 66 --g---~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-----------Pp~~t~~il~~~~ 129 (299)
T PRK07132 66 --D---KDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE-----------PPKDTYFLLTTKN 129 (299)
T ss_pred --C---CcCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC-----------CCCCeEEEEEeCC
Confidence 0 0112222222222221 13678999999999999999999999998 7788899988874
Q ss_pred CchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH
Q psy14500 580 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 634 (938)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~ 634 (938)
. ..+.|.+.+|| .++.|.|++.+++...+.
T Consensus 130 ~------------------------~kll~TI~SRc-~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 130 I------------------------NKVLPTIVSRC-QVFNVKEPDQQKILAKLL 159 (299)
T ss_pred h------------------------HhChHHHHhCe-EEEECCCCCHHHHHHHHH
Confidence 2 23667899999 599999999998887643
No 454
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=3.2e-07 Score=98.55 Aligned_cols=164 Identities=13% Similarity=0.064 Sum_probs=108.8
Q ss_pred HHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCC---CCCcCCCeEEEEehhhhhcCccccchHHHHHH
Q psy14500 38 DEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEV---PNSLLSKKILLLDIALLLAGTKYRGEFEDRLK 113 (938)
Q Consensus 38 ~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~---p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~ 113 (938)
..++.+...+..+..+|+ ||+|+.|+||+++++.+++.+.+... ........+..++... .. . ....++
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g----~~-i--~vd~Ir 75 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD----KD-L--SKSEFL 75 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC----Cc-C--CHHHHH
Confidence 456667777777666776 69999999999999999999855321 1000111222232111 10 0 112456
Q ss_pred HHHHHHHhc----CCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhHHHHhhhcCHHHHcccc
Q psy14500 114 KILKEISNN----QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQ 187 (938)
Q Consensus 114 ~~~~~a~~~----~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~~~~~~~ld~al~~Rf~ 187 (938)
.+.+.+.-. ++..|++||+++.+ +..++|.|+..+|. ..+.+|.+|+.++ .+-+++++||.
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m--------~~~a~NaLLK~LEEPp~~t~~il~~~~~~-----kll~TI~SRc~ 142 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKT--------SNSLLNALLKTIEEPPKDTYFLLTTKNIN-----KVLPTIVSRCQ 142 (299)
T ss_pred HHHHHhccCCcccCCceEEEEeccccc--------CHHHHHHHHHHhhCCCCCeEEEEEeCChH-----hChHHHHhCeE
Confidence 666665422 35679999999998 34678899999985 3577777777665 78899999999
Q ss_pred eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhh
Q psy14500 188 KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSY 231 (938)
Q Consensus 188 ~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~ 231 (938)
.++|.+++.++....|... .++++....++.+++
T Consensus 143 ~~~f~~l~~~~l~~~l~~~----------~~~~~~a~~~a~~~~ 176 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLSK----------NKEKEYNWFYAYIFS 176 (299)
T ss_pred EEECCCCCHHHHHHHHHHc----------CCChhHHHHHHHHcC
Confidence 9999999999888776521 245555555555554
No 455
>KOG0741|consensus
Probab=98.73 E-value=9.6e-09 Score=111.99 Aligned_cols=135 Identities=21% Similarity=0.403 Sum_probs=92.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCcccccc--chhHHHHH--------hC
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVR--------RK 528 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~--------~~ 528 (938)
.+||+||||||||.+||.|...|+...-. .+|..++.++ |+|+++. +.++...+ .+
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNArePK--IVNGPeIL~K------------YVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNAREPK--IVNGPEILNK------------YVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCCCc--ccCcHHHHHH------------hhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 59999999999999999999999754433 4577766654 7887765 33332221 12
Q ss_pred CCEEEEEcccccc-------------CHHHHHHHHHhhcCCceecCCCcee-ecCCeEEEEecCCCchhhhhhhcchHHH
Q psy14500 529 PYSLILLDEIEKA-------------NSDVFNILLQILDDGRLTDNRGRTI-NFRNTIIVMTSNLGSDKIKEMEKGDKEI 594 (938)
Q Consensus 529 ~~~vl~lDEid~~-------------~~~~~~~Ll~~le~g~~~~~~g~~~-~~~~~iiI~ttn~~~~~~~~~~~~~~~~ 594 (938)
.--|++|||||.+ +..+.|.||.-||. | ...+.++|--||...
T Consensus 324 gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDG----------VeqLNNILVIGMTNR~D------------- 380 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDG----------VEQLNNILVIGMTNRKD------------- 380 (744)
T ss_pred CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhccc----------HHhhhcEEEEeccCchh-------------
Confidence 2359999999853 46789999999984 2 346788888888521
Q ss_pred HHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHHHHHH
Q psy14500 595 IKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNILK 641 (938)
Q Consensus 595 ~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l~~~~ 641 (938)
.++.+|+ +|+...+...-+++.-..+|++..-+++.
T Consensus 381 -----------lIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMr 418 (744)
T KOG0741|consen 381 -----------LIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMR 418 (744)
T ss_pred -----------hHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhh
Confidence 1223333 68877788888888777777665554443
No 456
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.73 E-value=6.6e-09 Score=99.49 Aligned_cols=130 Identities=19% Similarity=0.335 Sum_probs=82.4
Q ss_pred cccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHH
Q psy14500 34 IGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR 111 (938)
Q Consensus 34 vG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 111 (938)
||....++++...+.+ ....+|||+|++||||+++|++++...... ...++.+++..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~-------~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRA-------NGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTC-------CS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCcc-------CCCeEEechhhCc------------
Confidence 5788888888887764 667889999999999999999999865332 2233333443221
Q ss_pred HHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc---CCceEEEEecChhHHH--HhhhcCHHHHccc
Q psy14500 112 LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLNEYR--QYIEKDAAFERRF 186 (938)
Q Consensus 112 l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~i~vI~~tn~~~~~--~~~~ld~al~~Rf 186 (938)
.++++.+ .+..|||+|+|.|. .+.+..|...++ ..++++|++++.+-.. ..-.+++.|..||
T Consensus 62 -~~~l~~a----~~gtL~l~~i~~L~--------~~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l 128 (138)
T PF14532_consen 62 -AELLEQA----KGGTLYLKNIDRLS--------PEAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRL 128 (138)
T ss_dssp -HHHHHHC----TTSEEEEECGCCS---------HHHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHC
T ss_pred -HHHHHHc----CCCEEEECChHHCC--------HHHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHh
Confidence 2344443 23489999999994 355666666664 3578888887764321 2234678888899
Q ss_pred ceEEeeCCC
Q psy14500 187 QKILVEEPD 195 (938)
Q Consensus 187 ~~i~~~~p~ 195 (938)
..+.+..|+
T Consensus 129 ~~~~i~lPp 137 (138)
T PF14532_consen 129 SQLEIHLPP 137 (138)
T ss_dssp STCEEEE--
T ss_pred CCCEEeCCC
Confidence 865555443
No 457
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.73 E-value=1.6e-07 Score=99.46 Aligned_cols=160 Identities=15% Similarity=0.065 Sum_probs=106.9
Q ss_pred HHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCCc------CCCeEEEEehhhhhcCccccchHHH
Q psy14500 38 DEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNSL------LSKKILLLDIALLLAGTKYRGEFED 110 (938)
Q Consensus 38 ~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~------~~~~~~~~~~~~l~~~~~~~g~~~~ 110 (938)
...++|...+..++.+| .||+||+|+||+++|.++|+.+.+...+... .-.+++.+....- ++.. ...
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~---~~~I--~id 78 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK---GRLH--SIE 78 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC---CCcC--cHH
Confidence 44567777777766666 5699999999999999999999764322100 0112333322110 0000 122
Q ss_pred HHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhHHHHhhhcCHHHHcc
Q psy14500 111 RLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERR 185 (938)
Q Consensus 111 ~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~~~~~~~ld~al~~R 185 (938)
.++.+...+... ++..|++||++|.|. .+++|.|+..+|. +++++|..|+.++ .+.|+++||
T Consensus 79 qiR~l~~~~~~~p~e~~~kv~ii~~ad~mt--------~~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~TI~SR 145 (290)
T PRK05917 79 TPRAIKKQIWIHPYESPYKIYIIHEADRMT--------LDAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPPTIRSR 145 (290)
T ss_pred HHHHHHHHHhhCccCCCceEEEEechhhcC--------HHHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcHHHHhc
Confidence 456666655422 334699999999993 4788999999986 4688888888887 899999999
Q ss_pred cceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 186 FQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 186 f~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
|..+.|+++. ...++++....++.++.+..
T Consensus 146 cq~~~~~~~~-------------------~~~i~~~~~~~l~~~~~g~~ 175 (290)
T PRK05917 146 SLSIHIPMEE-------------------KTLVSKEDIAYLIGYAQGKE 175 (290)
T ss_pred ceEEEccchh-------------------ccCCCHHHHHHHHHHhCCCh
Confidence 9999998751 11356777777777666544
No 458
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.71 E-value=1.4e-08 Score=115.87 Aligned_cols=150 Identities=19% Similarity=0.274 Sum_probs=95.3
Q ss_pred CCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCc------------------CCCe
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL------------------LSKK 89 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~------------------~~~~ 89 (938)
..|.+++|+...++.+.-. -....+++|+||||+|||++++.++..+........+ ...+
T Consensus 188 ~d~~~v~Gq~~~~~al~la--a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rP 265 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRP 265 (506)
T ss_pred cCeEEEECcHHHHhhhhee--ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCC
Confidence 3788899998877776543 3445789999999999999999999766422110000 1111
Q ss_pred E----EEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCc-----
Q psy14500 90 I----LLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE----- 160 (938)
Q Consensus 90 ~----~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~----- 160 (938)
+ ..++...+..|+.. .-...+..+. + .+|||||++.+ +...++.|++.|+.+.
T Consensus 266 fr~ph~~~s~~~l~GGg~~------~~pG~l~~A~--g--GvLfLDEi~e~--------~~~~~~~L~~~LE~g~v~I~r 327 (506)
T PRK09862 266 FRSPHHSASLTAMVGGGAI------PGPGEISLAH--N--GVLFLDELPEF--------ERRTLDALREPIESGQIHLSR 327 (506)
T ss_pred ccCCCccchHHHHhCCCce------ehhhHhhhcc--C--CEEecCCchhC--------CHHHHHHHHHHHHcCcEEEec
Confidence 1 11222233322210 0112222222 2 39999999987 3467778888886543
Q ss_pred ----------eEEEEecChhHHHHh----------------hhcCHHHHcccce-EEeeCCCHH
Q psy14500 161 ----------LHCIGATTLNEYRQY----------------IEKDAAFERRFQK-ILVEEPDIE 197 (938)
Q Consensus 161 ----------i~vI~~tn~~~~~~~----------------~~ld~al~~Rf~~-i~~~~p~~~ 197 (938)
+.+|+|+|+.++..+ ..++.++++||+. +.++.++.+
T Consensus 328 ~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 328 TRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred CCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 578999998752211 2588899999996 899999876
No 459
>PRK08116 hypothetical protein; Validated
Probab=98.70 E-value=1.6e-07 Score=100.00 Aligned_cols=159 Identities=18% Similarity=0.223 Sum_probs=89.1
Q ss_pred HHHHhcCCCCCccccHH---HHHHHHHHHhc---C--CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 22 TEKARLGKLDPVIGRDD---EIRRAIQVLQR---R--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 22 ~~~~~~~~~~~lvG~~~---~~~~l~~~l~~---~--~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
.++++..+|+.++-.+. ++..+..++.. . ...+++|+|++|||||+||.++++.+... +.+++.+
T Consensus 76 ~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~ 148 (268)
T PRK08116 76 DEKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFV 148 (268)
T ss_pred CHHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEE
Confidence 46677778887753322 33334433332 2 22359999999999999999999998653 4566777
Q ss_pred ehhhhhcCcc--ccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc---CCceEEEEecC
Q psy14500 94 DIALLLAGTK--YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATT 168 (938)
Q Consensus 94 ~~~~l~~~~~--~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~i~vI~~tn 168 (938)
+...+....+ +.+........++..+...+ +|+|||+..... +......|..++. .....+|.|||
T Consensus 149 ~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~~d---lLviDDlg~e~~------t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 149 NFPQLLNRIKSTYKSSGKEDENEIIRSLVNAD---LLILDDLGAERD------TEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred EHHHHHHHHHHHHhccccccHHHHHHHhcCCC---EEEEecccCCCC------CHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 7665542110 11110111233444444222 999999964311 1122333444443 23346777777
Q ss_pred hhHHHHhhhcCHHHHcccc----eEEeeCCCH
Q psy14500 169 LNEYRQYIEKDAAFERRFQ----KILVEEPDI 196 (938)
Q Consensus 169 ~~~~~~~~~ld~al~~Rf~----~i~~~~p~~ 196 (938)
...-.-...++..+.+|+. .|.+.-++.
T Consensus 220 ~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 220 LSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 6542211235788999852 366766664
No 460
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.70 E-value=3e-07 Score=91.42 Aligned_cols=176 Identities=20% Similarity=0.277 Sum_probs=117.3
Q ss_pred cccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcC
Q psy14500 428 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 507 (938)
Q Consensus 428 ~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 507 (938)
.++|-+...+.+.+-..+...| .|-.++||+|.-|||||++.+++.+.+...+..++.++-.++..-
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G-----~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L-------- 127 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEG-----LPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL-------- 127 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcC-----CcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH--------
Confidence 4567777777777766655544 455689999999999999999999999888888888876665432
Q ss_pred CCCCCccccccchhHHHHHhCC-CEEEEEcccc-ccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 508 APPGYIGYEEGGYLTEIVRRKP-YSLILLDEIE-KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 508 ~~~~~~g~~~~~~l~~~~~~~~-~~vl~lDEid-~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
..+.+.++..+ .-|||+|+.- .-+......|-.+||.|. ...+.|++|-+|||.-.- +.
T Consensus 128 -----------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v-------e~rP~NVl~YATSNRRHL-l~ 188 (287)
T COG2607 128 -----------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGV-------EGRPANVLFYATSNRRHL-LP 188 (287)
T ss_pred -----------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCc-------ccCCCeEEEEEecCCccc-cc
Confidence 12344454444 4689999874 234566777888887532 235678999999996321 11
Q ss_pred hhhcc---hHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 586 EMEKG---DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 586 ~~~~~---~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
+.+.+ ...++ ...+.++.++ .|-+||...+.|.|.+.++..+|++.+...
T Consensus 189 e~~~dn~~~~~ei--h~~eaveEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 189 EDMKDNEGSTGEI--HPSEAVEEKL--SLSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred HhhhhCCCccccc--ChhHHHHHhh--chhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 11111 00011 0112222333 366899999999999999999998887744
No 461
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.70 E-value=1.8e-07 Score=109.47 Aligned_cols=180 Identities=19% Similarity=0.257 Sum_probs=112.6
Q ss_pred CCCCccccHHHHHHHHHHHh--cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc----
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT---- 102 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~--~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~---- 102 (938)
.+.+++|....++.+...+. .....++++.|++|||||++|++++...... +.+++.++|+.+....
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~i~i~c~~~~~~~~~~~ 208 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPRA-------KAPFIALNMAAIPKDLIESE 208 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCCC-------CCCeEeeeCCCCCHHHHHHH
Confidence 56789999988888777654 3455679999999999999999999876432 5678888886552100
Q ss_pred -------cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceE
Q psy14500 103 -------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELH 162 (938)
Q Consensus 103 -------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~ 162 (938)
.+.|... .-...+.. ..+..|||||++.|. .+.+..|..+++.+ +++
T Consensus 209 lfg~~~g~~~~~~~-~~~g~~~~----a~~Gtl~l~~i~~l~--------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 275 (469)
T PRK10923 209 LFGHEKGAFTGANT-IRQGRFEQ----ADGGTLFLDEIGDMP--------LDVQTRLLRVLADGQFYRVGGYAPVKVDVR 275 (469)
T ss_pred hcCCCCCCCCCCCc-CCCCCeeE----CCCCEEEEeccccCC--------HHHHHHHHHHHhcCcEEeCCCCCeEEeeEE
Confidence 0000000 00001111 113379999999993 45677787777644 358
Q ss_pred EEEecChhHHH--HhhhcCHHHHcccceEEeeCCCH----HHHHHHHHhhhhhhhcccC---CCCCHHHHHHHHH
Q psy14500 163 CIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDI----EETISILRGLQKKYEVHHG---VEITDPAIVAASE 228 (938)
Q Consensus 163 vI~~tn~~~~~--~~~~ld~al~~Rf~~i~~~~p~~----~e~~~il~~~~~~~~~~~~---~~i~~~~l~~~~~ 228 (938)
+|++|+.+-.. ..-.+.+.|..||..+.+..|+. +++..++++++.++....+ ..++++++..+..
T Consensus 276 ii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 350 (469)
T PRK10923 276 IIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTR 350 (469)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHh
Confidence 89988865311 11235678888997655555544 4455666777766544333 2467776665544
No 462
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.69 E-value=5.3e-08 Score=106.15 Aligned_cols=109 Identities=20% Similarity=0.350 Sum_probs=73.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEcc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 537 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDE 537 (938)
.+++|+||||||||+||.+||+.+...+..++.+...++......... .. ..........+..+ .+|+|||
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~-~~------~~~~~~~~~~l~~~--DLLIIDD 254 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF-NN------DKELEEVYDLLINC--DLLIIDD 254 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh-cc------chhHHHHHHHhccC--CEEEEec
Confidence 379999999999999999999999877888888888776543211111 00 00011112334444 4999999
Q ss_pred cc--ccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 538 IE--KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 538 id--~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
+. ...+..++.|+.+++... ..+.-+|+|||.+...+.
T Consensus 255 lG~e~~t~~~~~~Lf~iin~R~----------~~~k~tIiTSNl~~~el~ 294 (329)
T PRK06835 255 LGTEKITEFSKSELFNLINKRL----------LRQKKMIISTNLSLEELL 294 (329)
T ss_pred cCCCCCCHHHHHHHHHHHHHHH----------HCCCCEEEECCCCHHHHH
Confidence 95 556778899999998521 112347899999877653
No 463
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.67 E-value=6.9e-07 Score=96.32 Aligned_cols=174 Identities=16% Similarity=0.163 Sum_probs=98.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch---hhhhhhcCCCCCCcccccc---chhHHH----HHhC
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK---HSISRLIGAPPGYIGYEEG---GYLTEI----VRRK 528 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~---~~~~~l~g~~~~~~g~~~~---~~l~~~----~~~~ 528 (938)
.++++||+|+|||++++.+++.+......+..+....+... ..+...+|.+.. +.... ..+... ....
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHHhCC
Confidence 68999999999999999999887422211111111111111 122233444321 21111 122222 2345
Q ss_pred CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccC
Q psy14500 529 PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFR 608 (938)
Q Consensus 529 ~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 608 (938)
...+|+|||++.+++..++.|..+.+- . .+ ....+.++++...... + .+...-.
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~-~-~~------~~~~~~vvl~g~~~~~---~---------------~l~~~~~ 176 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNF-Q-TD------NAKLLQIFLVGQPEFR---E---------------TLQSPQL 176 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCc-c-cC------CCCeEEEEEcCCHHHH---H---------------HHcCchh
Confidence 568999999999999888877655442 0 00 1122334555443111 0 1111112
Q ss_pred hHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 609 PEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 609 ~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
..+.+|+...+.++|++.+++.+++...+.... ......+++++++.|.+.+
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g-----~~~~~~~~~~~~~~i~~~s 228 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIEHRLERAG-----NRDAPVFSEGAFDAIHRFS 228 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcC-----CCCCCCcCHHHHHHHHHHc
Confidence 357788877899999999999998776664321 1112458999999998854
No 464
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.66 E-value=8.3e-08 Score=100.02 Aligned_cols=108 Identities=20% Similarity=0.272 Sum_probs=70.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
+++|+|+||||||+||.+|++.+...+..+..++++++...... .+.. . .. ....+...+. ...+|+|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~--~~~~-~---~~-~~~~~l~~l~--~~dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKD--TFSN-S---ET-SEEQLLNDLS--NVDLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHH--HHhh-c---cc-cHHHHHHHhc--cCCEEEEeCC
Confidence 69999999999999999999999777778888877776543111 1110 0 00 1112233333 3459999999
Q ss_pred cccC--HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 539 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 539 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
+... ......|.++++. ++ ..+.-+|+|||.....+.
T Consensus 172 g~~~~s~~~~~~l~~Ii~~-Ry---------~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDR-RS---------SSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred CCCCCCHHHHHHHHHHHHH-HH---------hCCCCEEEeCCCCHHHHH
Confidence 7654 3455678888874 21 123447899999877653
No 465
>PF13173 AAA_14: AAA domain
Probab=98.65 E-value=1e-07 Score=89.99 Aligned_cols=123 Identities=21% Similarity=0.263 Sum_probs=79.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeC
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDE 132 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDE 132 (938)
+.++|+||+||||||+++.+++.+. ....++.+++........ ....+...+.+.. ..++.++||||
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~~----~~~~~~~~~~~~~-~~~~~~i~iDE 69 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRRL----ADPDLLEYFLELI-KPGKKYIFIDE 69 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHHH----hhhhhHHHHHHhh-ccCCcEEEEeh
Confidence 5689999999999999999998873 134566666654332100 0000222332221 13567999999
Q ss_pred ccccccCCCCCCccchhhhhhhhccCC-ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHH
Q psy14500 133 LHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEE 198 (938)
Q Consensus 133 id~l~~~~~~~~~~~~~~~L~~~l~~~-~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e 198 (938)
++.+ .+....++.+.+.+ ++.+|.|++..... .......+..|...+++.+++..|
T Consensus 70 iq~~---------~~~~~~lk~l~d~~~~~~ii~tgS~~~~l-~~~~~~~l~gr~~~~~l~Plsf~E 126 (128)
T PF13173_consen 70 IQYL---------PDWEDALKFLVDNGPNIKIILTGSSSSLL-SKDIAESLAGRVIEIELYPLSFRE 126 (128)
T ss_pred hhhh---------ccHHHHHHHHHHhccCceEEEEccchHHH-hhcccccCCCeEEEEEECCCCHHH
Confidence 9988 34566677777665 56777776654421 113456677788889999998876
No 466
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.65 E-value=1.4e-07 Score=90.40 Aligned_cols=126 Identities=22% Similarity=0.254 Sum_probs=73.9
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC------------ccccchHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG------------TKYRGEFEDRLKKILKEI 119 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~------------~~~~g~~~~~l~~~~~~a 119 (938)
..+++|+||||||||++++.++..+.... ..++.++++..... ..............+..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 46799999999999999999999883321 13555555432211 111123333556666666
Q ss_pred HhcCCCeEEEEeCccccccCCCCCCccchhh------hhhhhccCCceEEEEecChhHHHHhhhcCHHHHcccce-EEee
Q psy14500 120 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGN------MLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVE 192 (938)
Q Consensus 120 ~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~------~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~ 192 (938)
.... +.++||||++.+..... ..... ............+|+++|... ...+..+..|+.. +.+.
T Consensus 75 ~~~~-~~viiiDei~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~ 145 (148)
T smart00382 75 RKLK-PDVLILDEITSLLDAEQ----EALLLLLEELRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRFDRRIVLL 145 (148)
T ss_pred HhcC-CCEEEEECCcccCCHHH----HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCc----cCchhhhhhccceEEEec
Confidence 6433 57999999999865321 00000 112233456788889988511 1345555657664 5544
Q ss_pred C
Q psy14500 193 E 193 (938)
Q Consensus 193 ~ 193 (938)
.
T Consensus 146 ~ 146 (148)
T smart00382 146 L 146 (148)
T ss_pred C
Confidence 3
No 467
>KOG0377|consensus
Probab=98.64 E-value=8.6e-09 Score=108.90 Aligned_cols=118 Identities=24% Similarity=0.395 Sum_probs=82.8
Q ss_pred ccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhcccc
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININK 745 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~ 745 (938)
-.+||+||.+|.|--.+-+-++..+..-+||-||+||||..++++|-.+..+ +..++.=+||||+++++...+...
T Consensus 168 TiCGDLHGklDDL~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~k 247 (631)
T KOG0377|consen 168 TICGDLHGKLDDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFIK 247 (631)
T ss_pred EEeccccccccceEEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHHH
Confidence 4579999997777766767777677789999999999999999999887776 445677799999999987665321
Q ss_pred C---CccccHHHhhCCCCHHHHHHHHhcCCce-EEeCCEEEEecccCcCCC
Q psy14500 746 K---SKLDTFDDILDAPDKKKLVSWLRTQPLA-IYYKKYLMIHAGVAKQWT 792 (938)
Q Consensus 746 ~---~~~~~~~~~~~~~~~~~~~~~l~~lp~~-~~~~~~~~vHAg~~p~~~ 792 (938)
. .-......+ ..-+-++++=||+. +...++++||||++....
T Consensus 248 Ev~~KYk~~~k~I-----lr~leevy~WLPi~tiid~~ilvvHGGiSd~Td 293 (631)
T KOG0377|consen 248 EVESKYKRHGKRI-----LRFLEEVYRWLPIGTIIDSRILVVHGGISDSTD 293 (631)
T ss_pred HHHHHhhhcccHH-----HHHHHHHHHhcchhhhcccceEEEecCcccchh
Confidence 0 000000011 12233444446877 445689999999987543
No 468
>PRK15115 response regulator GlrR; Provisional
Probab=98.64 E-value=3.2e-07 Score=106.62 Aligned_cols=176 Identities=16% Similarity=0.198 Sum_probs=112.6
Q ss_pred CccccHHHHHHHHHHHh--cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHH
Q psy14500 32 PVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE 109 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~--~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~ 109 (938)
.++|....+.+++.... .....+++|+|++|||||++|++++...... +.+++.++|..+... ..+
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r~-------~~~f~~i~c~~~~~~-----~~~ 202 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPRA-------SKPFIAINCGALPEQ-----LLE 202 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCCC-------CCCeEEEeCCCCCHH-----HHH
Confidence 57888888777776543 3445689999999999999999999876332 457888887654210 000
Q ss_pred HHHHHHHHHH--------------HhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceE
Q psy14500 110 DRLKKILKEI--------------SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELH 162 (938)
Q Consensus 110 ~~l~~~~~~a--------------~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~ 162 (938)
..+|... .....+..|||||++.|. .+.+..|...++.+ +++
T Consensus 203 ---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~--------~~~q~~L~~~l~~~~~~~~g~~~~~~~~~r 271 (444)
T PRK15115 203 ---SELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMP--------APLQVKLLRVLQERKVRPLGSNRDIDIDVR 271 (444)
T ss_pred ---HHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCC--------HHHHHHHHHHHhhCCEEeCCCCceeeeeEE
Confidence 1111110 001123489999999994 45667777777543 468
Q ss_pred EEEecChhHHHH--hhhcCHHHHcccceEEeeCCCHHHHH----HHHHhhhhhhhcccC---CCCCHHHHHHHHHhh
Q psy14500 163 CIGATTLNEYRQ--YIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG---VEITDPAIVAASELS 230 (938)
Q Consensus 163 vI~~tn~~~~~~--~~~ld~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~---~~i~~~~l~~~~~~s 230 (938)
+|++|+.+.... .-.+.+.+..|+..+.+..|+..+|. .++++++.++....+ ..+++++++.+..+.
T Consensus 272 ii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~ 348 (444)
T PRK15115 272 IISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTAS 348 (444)
T ss_pred EEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCC
Confidence 899888642111 11345677778887777777776665 455666666543333 357888888777653
No 469
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.64 E-value=9.9e-08 Score=100.63 Aligned_cols=110 Identities=22% Similarity=0.379 Sum_probs=76.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
+++|+||||||||+||-+|++.+...+..+..+..+++...-.... .. |. ....+...+... .+|+|||+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~--~~-----~~-~~~~l~~~l~~~--dlLIiDDl 176 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAF--DE-----GR-LEEKLLRELKKV--DLLIIDDI 176 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHH--hc-----Cc-hHHHHHHHhhcC--CEEEEecc
Confidence 7999999999999999999999987788999999888876522211 00 00 111233334444 59999999
Q ss_pred cc--cCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhc
Q psy14500 539 EK--ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 589 (938)
Q Consensus 539 d~--~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~ 589 (938)
.. +++...+.+++++... ..+... |+|||.+...+.+.++
T Consensus 177 G~~~~~~~~~~~~~q~I~~r----------~~~~~~-~~tsN~~~~~~~~~~~ 218 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRR----------YESRSL-IITSNLSFGEWDELFG 218 (254)
T ss_pred cCccCCHHHHHHHHHHHHHH----------Hhhccc-eeecCCChHHHHhhcc
Confidence 76 5666778888877641 122233 9999999888766544
No 470
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.63 E-value=1.1e-07 Score=99.01 Aligned_cols=147 Identities=16% Similarity=0.209 Sum_probs=86.0
Q ss_pred HHHHhcCCCCCccc----cHHHHHHHHHHHhcC--CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 22 TEKARLGKLDPVIG----RDDEIRRAIQVLQRR--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 22 ~~~~~~~~~~~lvG----~~~~~~~l~~~l~~~--~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
.+.++..+|+.+.- +..++..+..++... ...+++|+|+||||||+|+.++++.+... +..+..++.
T Consensus 63 ~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~-------g~~v~~it~ 135 (244)
T PRK07952 63 RPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR-------GKSVLIITV 135 (244)
T ss_pred CccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEEH
Confidence 44556778998853 233555555555432 23579999999999999999999998553 456677777
Q ss_pred hhhhcCccccchH---HHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC---CceEEEEecCh
Q psy14500 96 ALLLAGTKYRGEF---EDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---GELHCIGATTL 169 (938)
Q Consensus 96 ~~l~~~~~~~g~~---~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---~~i~vI~~tn~ 169 (938)
..+...-+ ..+ ......++..+.. .-+|+|||++....+ .-....|..+++. ....+|.+||.
T Consensus 136 ~~l~~~l~--~~~~~~~~~~~~~l~~l~~---~dlLvIDDig~~~~s------~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 136 ADIMSAMK--DTFSNSETSEEQLLNDLSN---VDLLVIDEIGVQTES------RYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred HHHHHHHH--HHHhhccccHHHHHHHhcc---CCEEEEeCCCCCCCC------HHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 66552111 100 0112345555443 339999999876321 1122344445432 24566777775
Q ss_pred hHHHHhhhcCHHHHccc
Q psy14500 170 NEYRQYIEKDAAFERRF 186 (938)
Q Consensus 170 ~~~~~~~~ld~al~~Rf 186 (938)
..-.-.-.++..+.+|+
T Consensus 205 ~~~~l~~~~g~ri~sRl 221 (244)
T PRK07952 205 NMEEMTKLLGERVMDRM 221 (244)
T ss_pred CHHHHHHHhChHHHHHH
Confidence 43211223566777777
No 471
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.62 E-value=8.5e-07 Score=94.38 Aligned_cols=147 Identities=15% Similarity=0.159 Sum_probs=100.0
Q ss_pred ccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCC---C-----------cCCCeEEEEehhhhh
Q psy14500 35 GRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN---S-----------LLSKKILLLDIALLL 99 (938)
Q Consensus 35 G~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~---~-----------~~~~~~~~~~~~~l~ 99 (938)
.|+.+++.+...+.+++.+| .||+|| +||+++|+.+|+.+.+.+... . ..-.+++.+....
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~-- 81 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG-- 81 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC--
Confidence 36678888888888877776 588896 689999999999987643110 0 0001222222210
Q ss_pred cCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--ceEEEEecChhHHHH
Q psy14500 100 AGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQ 174 (938)
Q Consensus 100 ~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~i~vI~~tn~~~~~~ 174 (938)
.. -....++.+...+.. .++..|++||++|.|. .++.|.|+..+|.+ ++++|.+|+.++
T Consensus 82 --~~---I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~--------~~AaNaLLKtLEEPp~~t~~iL~t~~~~--- 145 (290)
T PRK07276 82 --QV---IKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH--------VNAANSLLKVIEEPQSEIYIFLLTNDEN--- 145 (290)
T ss_pred --Cc---CCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC--------HHHHHHHHHHhcCCCCCeEEEEEECChh---
Confidence 00 012356666665542 2335699999999993 46789999999864 478888888887
Q ss_pred hhhcCHHHHcccceEEeeCCCHHHHHHHHH
Q psy14500 175 YIEKDAAFERRFQKILVEEPDIEETISILR 204 (938)
Q Consensus 175 ~~~ld~al~~Rf~~i~~~~p~~~e~~~il~ 204 (938)
.+-|+++|||..|.|+. +.++...++.
T Consensus 146 --~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 146 --KVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred --hCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 89999999999999976 5565555554
No 472
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.62 E-value=2.4e-07 Score=108.39 Aligned_cols=175 Identities=13% Similarity=0.144 Sum_probs=114.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCC----CccccccchhHHHHHhCCCEEE
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG----YIGYEEGGYLTEIVRRKPYSLI 533 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~----~~g~~~~~~l~~~~~~~~~~vl 533 (938)
+.+++.|+.|||||+++++++..+-. ..||..+..+ .+...++|.-.- ..|.. ..-.+.+..+.++||
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~-----~t~~~L~Gg~Dl~~~l~~g~~--~~~pGlla~Ah~GvL 97 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPG-----IADDRLLGGLDLAATLRAGRP--VAQRGLLAEADGGVL 97 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCC-----CcHHHccCCchHHhHhhcCCc--CCCCCceeeccCCEE
Confidence 46999999999999999999998832 2355444332 233456554200 00110 012345667888999
Q ss_pred EEccccccCHHHHHHHHHhhcCCceecC-CCceeec-CCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHH
Q psy14500 534 LLDEIEKANSDVFNILLQILDDGRLTDN-RGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF 611 (938)
Q Consensus 534 ~lDEid~~~~~~~~~Ll~~le~g~~~~~-~g~~~~~-~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 611 (938)
|+||+..+++.+++.|++.|++|.++.. .|.++.+ .++++|+|-| +.+. .+.+++.+
T Consensus 98 ~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~-~~~~--------------------~~~L~~~l 156 (584)
T PRK13406 98 VLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDE-GAEE--------------------DERAPAAL 156 (584)
T ss_pred EecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCC-Chhc--------------------ccCCCHHh
Confidence 9999999999999999999999999863 3666665 4455555422 2211 24689999
Q ss_pred hhcCCeEEEccCCCHHHHHHH--HHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 612 INRIDDIIVFRYLNRKNILSI--ANIQLNILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 612 ~~R~~~~i~f~~l~~e~~~~i--~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
++||+..|.+.+++..+.... ....+....+++. .+.++++++++++...
T Consensus 157 LDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~----~v~v~~~~l~~i~~~~ 208 (584)
T PRK13406 157 ADRLAFHLDLDGLALRDAREIPIDADDIAAARARLP----AVGPPPEAIAALCAAA 208 (584)
T ss_pred HhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHc----cCCCCHHHHHHHHHHH
Confidence 999999999999887654321 1112222223332 3677888888877643
No 473
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.59 E-value=7.1e-07 Score=101.05 Aligned_cols=185 Identities=23% Similarity=0.266 Sum_probs=113.9
Q ss_pred hhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc-----c-
Q psy14500 425 LCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI-----E- 498 (938)
Q Consensus 425 l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~-----~- 498 (938)
++++++|++++++.+...++....++..++ ..++|+||||+|||+||++|++.+-. .++.++....+. +
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~~~~---~IL~LvGPpG~GKSsLa~~la~~le~--~~~Y~~kg~~~~sP~~e~P 148 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLEEKK---QILYLLGPVGGGKSSLAERLKSLMER--VPIYVLKANGERSPVNESP 148 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcCCCC---ceEEEecCCCCCchHHHHHHHHHHHh--CcceeecCCCCCCCCCCCC
Confidence 456789999999999999987776664433 26899999999999999999998721 133333220000 0
Q ss_pred -----h----hhhhhhcCCCCC----------------Ccc-------------------------ccc-----------
Q psy14500 499 -----K----HSISRLIGAPPG----------------YIG-------------------------YEE----------- 517 (938)
Q Consensus 499 -----~----~~~~~l~g~~~~----------------~~g-------------------------~~~----------- 517 (938)
. ..+...+|.+.. |-| .++
T Consensus 149 L~L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~ 228 (644)
T PRK15455 149 LGLFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGK 228 (644)
T ss_pred CCCCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccc
Confidence 0 000111122100 000 000
Q ss_pred --cch-------------hHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCch
Q psy14500 518 --GGY-------------LTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 582 (938)
Q Consensus 518 --~~~-------------l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~ 582 (938)
.+. +.+.+..+..|++=|=|+-|.+..++..||.+.++|.+...++...-.-+.+||+.||-..
T Consensus 229 vdi~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE~E- 307 (644)
T PRK15455 229 VDIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNESE- 307 (644)
T ss_pred eeHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCHHH-
Confidence 000 1122334445777777999999999999999999999865554434456788899999421
Q ss_pred hhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCH-HHHHHH
Q psy14500 583 KIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KNILSI 632 (938)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~-e~~~~i 632 (938)
+. .-.......+|++|+ .+|.+|-..+ .+=.+|
T Consensus 308 -~~---------------~F~~nk~nEA~~DRi-~~V~VPY~lr~~eE~kI 341 (644)
T PRK15455 308 -WQ---------------TFRNNKNNEAFLDRI-YIVKVPYCLRVSEEIKI 341 (644)
T ss_pred -HH---------------HHhcCccchhhhceE-EEEeCCccCChhHHHHH
Confidence 11 112345678999999 5777766443 344455
No 474
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.58 E-value=2.2e-07 Score=91.23 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=47.3
Q ss_pred ccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHH
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIH 735 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~ 735 (938)
..++|+|+...+++.+++.+......|.++++||++ +.++++++.++...+++|+||||..
T Consensus 4 ~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~~~~~~V~GN~D~~ 64 (158)
T TIGR00040 4 LVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLAAKVIAVRGNNDGE 64 (158)
T ss_pred EEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhCCceEEEccCCCch
Confidence 357899999877777776666543679999999998 3467888877655589999999974
No 475
>KOG1514|consensus
Probab=98.58 E-value=1.1e-06 Score=100.18 Aligned_cols=228 Identities=18% Similarity=0.164 Sum_probs=140.8
Q ss_pred hHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhc-----CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC
Q psy14500 12 GYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQR-----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL 86 (938)
Q Consensus 12 ~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~-----~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~ 86 (938)
-.|+.+...|.-...|. .+-+++.+..++-.++.. .....+.+.|-||||||.+++.+.+.+........+.
T Consensus 380 S~l~~ara~Lhls~vp~---sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p 456 (767)
T KOG1514|consen 380 SELSKARARLHLSAVPE---SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP 456 (767)
T ss_pred hHHHHHHHHhHHhhccc---cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCC
Confidence 35777777886666774 566799888888887653 3334688889999999999999999876432111222
Q ss_pred CCeEEEEehhhhhc-------------Cccccch-HHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccch-hhh
Q psy14500 87 SKKILLLDIALLLA-------------GTKYRGE-FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDA-GNM 151 (938)
Q Consensus 87 ~~~~~~~~~~~l~~-------------~~~~~g~-~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~-~~~ 151 (938)
...++++|.-.+.. +.+..+. .-..+..-|........++||+|||+|.|.... +++ .|.
T Consensus 457 ~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----QdVlYn~ 531 (767)
T KOG1514|consen 457 KFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----QDVLYNI 531 (767)
T ss_pred CccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----HHHHHHH
Confidence 55666666533321 1111111 111222333322234567999999999997643 443 233
Q ss_pred hh-hhccCCceEEEEecChhHHHHhhhcCHHHHcccc--eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHH
Q psy14500 152 LK-PELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ--KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASE 228 (938)
Q Consensus 152 L~-~~l~~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~ 228 (938)
|. +.+.+.+++||+..|..++-.- .+...+.+|++ .|.|.+++.+|...|+..-+... ..+.+.+++.+++
T Consensus 532 fdWpt~~~sKLvvi~IaNTmdlPEr-~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----~~f~~~aielvar 605 (767)
T KOG1514|consen 532 FDWPTLKNSKLVVIAIANTMDLPER-LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----DAFENKAIELVAR 605 (767)
T ss_pred hcCCcCCCCceEEEEecccccCHHH-HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-----hhcchhHHHHHHH
Confidence 32 3445678888887775442111 23445666776 49999999999999987555432 2356666666554
Q ss_pred hhhhccccCCCchhhhhHHHHHHHHHHH
Q psy14500 229 LSYRYISDRFMPDKAIDLIDEAAAKIKI 256 (938)
Q Consensus 229 ~s~~~~~~~~~p~~a~~ll~~a~~~~~~ 256 (938)
... ...+-.++|.++++.|...+..
T Consensus 606 kVA---avSGDaRraldic~RA~Eia~~ 630 (767)
T KOG1514|consen 606 KVA---AVSGDARRALDICRRAAEIAEE 630 (767)
T ss_pred HHH---hccccHHHHHHHHHHHHHHhhh
Confidence 322 1223338888888888766543
No 476
>PRK09183 transposase/IS protein; Provisional
Probab=98.57 E-value=2e-07 Score=98.95 Aligned_cols=107 Identities=21% Similarity=0.340 Sum_probs=71.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHH--hCCCEEEEEc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR--RKPYSLILLD 536 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~--~~~~~vl~lD 536 (938)
+++|+||||||||++|.+|+..+...+..+..+++.++......... . +.+...+. .....+++||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~-----------~-~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQR-----------Q-GRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHH-----------C-CcHHHHHHHHhcCCCEEEEc
Confidence 69999999999999999999887666777777776655432111100 0 01111121 2344699999
Q ss_pred cccc--cCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhh
Q psy14500 537 EIEK--ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 588 (938)
Q Consensus 537 Eid~--~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~ 588 (938)
|++. ++...++.|+++++. ...+..+|+|||.+...|.+.+
T Consensus 172 dlg~~~~~~~~~~~lf~li~~-----------r~~~~s~iiTsn~~~~~w~~~~ 214 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAK-----------RYEKGSMILTSNLPFGQWDQTF 214 (259)
T ss_pred ccccCCCChHHHHHHHHHHHH-----------HHhcCcEEEecCCCHHHHHHHh
Confidence 9986 456677789999874 1112237899999998886654
No 477
>KOG0478|consensus
Probab=98.57 E-value=5e-07 Score=102.01 Aligned_cols=184 Identities=11% Similarity=0.157 Sum_probs=109.6
Q ss_pred HHHHHhhccccChHHHHHHHHHHHHhhhcC-CCC--CCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 420 NIENLLCKRVVGQDEAISAVSNAIRRSRSG-LSD--AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 420 ~l~~~l~~~viGq~~~~~~l~~~l~~~~~~-~~~--~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
-|.+.+--.|.|.+..++.+.-.+-..... ... .-+..-+|||+|.||||||.+-+.+++.+-+. .+..-..+.-
T Consensus 422 lLa~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg--~yTSGkGsSa 499 (804)
T KOG0478|consen 422 LLARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRG--VYTSGKGSSA 499 (804)
T ss_pred HHHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcc--eeecCCccch
Confidence 345556677889999998888777432211 001 12233489999999999999999999988211 1111111110
Q ss_pred cchhhhhhhcCCCCCCccccc-cchh---HHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-Cceee-cCC
Q psy14500 497 IEKHSISRLIGAPPGYIGYEE-GGYL---TEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTIN-FRN 570 (938)
Q Consensus 497 ~~~~~~~~l~g~~~~~~g~~~-~~~l---~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~~-~~~ 570 (938)
. |-.. |+..+. .+++ .+++-.+.+||=.|||+|||+.+.++.|.++||.-.+.... |-... ..+
T Consensus 500 v---------GLTa-yVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR 569 (804)
T KOG0478|consen 500 V---------GLTA-YVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNAR 569 (804)
T ss_pred h---------ccee-eEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeecccc
Confidence 0 0000 222111 1111 23445667889999999999999999999999987766544 33222 355
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhh-ccChHHhhcCCe-EEEccCCCHH
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI-YFRPEFINRIDD-IIVFRYLNRK 627 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~l~~R~~~-~i~f~~l~~e 627 (938)
+-++++.|.-...+... .. .++. .++|.|++|||. .+.+.+.++.
T Consensus 570 ~SVLAaANP~~skynp~----k~--------i~eNI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 570 CSVLAAANPIRSKYNPN----KS--------IIENINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred ceeeeeeccccccCCCC----Cc--------hhhccCCChhhhhhhcEEEEEecCcchh
Confidence 67788888422222110 00 0011 478999999997 4455666654
No 478
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.56 E-value=6.2e-07 Score=95.65 Aligned_cols=155 Identities=17% Similarity=0.310 Sum_probs=98.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
++||+||+|||||.+++..-+.+.....-...++++..+....+..++...-. ...++.+ . -......|+|||++
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~---k~~~~~~-g-P~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLE---KRRGRVY-G-PPGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTEC---ECTTEEE-E-EESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEE---cCCCCCC-C-CCCCcEEEEEeccc
Confidence 79999999999999998766555333323567788877766655555432211 0011110 0 02234579999999
Q ss_pred cccC------HHHHHHHHHhhcCCceecCCC-ceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHH
Q psy14500 539 EKAN------SDVFNILLQILDDGRLTDNRG-RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF 611 (938)
Q Consensus 539 d~~~------~~~~~~Ll~~le~g~~~~~~g-~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l 611 (938)
.... ....+.|.++++.|-+.+... .-....++.+|++.|.+.. +..+++-|
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G---------------------r~~is~R~ 168 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG---------------------RNPISPRF 168 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-----------------------SHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC---------------------CCCCChHH
Confidence 6543 345788899999988887543 3456688889988886432 12356778
Q ss_pred hhcCCeEEEccCCCHHHHHHHHHHHHHHH
Q psy14500 612 INRIDDIIVFRYLNRKNILSIANIQLNIL 640 (938)
Q Consensus 612 ~~R~~~~i~f~~l~~e~~~~i~~~~l~~~ 640 (938)
++.+ .++.+++++.+.+..|....+...
T Consensus 169 ~r~f-~i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 169 LRHF-NILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp HTTE-EEEE----TCCHHHHHHHHHHHHH
T ss_pred hhhe-EEEEecCCChHHHHHHHHHHHhhh
Confidence 8888 599999999999999988776654
No 479
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.56 E-value=2.2e-07 Score=89.00 Aligned_cols=118 Identities=21% Similarity=0.256 Sum_probs=68.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhh---hc-CCCCCCccccccchhHHHHHhCCCEEEE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISR---LI-GAPPGYIGYEEGGYLTEIVRRKPYSLIL 534 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~---l~-g~~~~~~g~~~~~~l~~~~~~~~~~vl~ 534 (938)
+++|+||||||||++++.++..+......++.++++.......... .+ .......+..........++..+..+|+
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 7999999999999999999999865444678888776544322110 00 0011111111122333344444458999
Q ss_pred EccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCC
Q psy14500 535 LDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 579 (938)
Q Consensus 535 lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 579 (938)
+||++.+.......+...... ...........+..+|+++|.
T Consensus 84 iDei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EECCcccCCHHHHHHHHhhhh---hHHHHHHHhcCCCEEEEEeCC
Confidence 999999988776665443110 000000013355678888884
No 480
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.55 E-value=5.3e-08 Score=107.21 Aligned_cols=223 Identities=15% Similarity=0.140 Sum_probs=112.6
Q ss_pred HHHHhhccccChHHHHHHHHHHHHhhhcCCCCC----CCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 421 IENLLCKRVVGQDEAISAVSNAIRRSRSGLSDA----KRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 421 l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~----~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
+-+.+--.|+|.+.++..+.-.+-..... ..+ .+..-++||+|.||||||.|.+.+++... .-+.+....-
T Consensus 18 l~~s~aP~i~g~~~iK~aill~L~~~~~~-~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~p----r~v~~~g~~~ 92 (331)
T PF00493_consen 18 LANSIAPSIYGHEDIKKAILLQLFGGVEK-NDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAP----RSVYTSGKGS 92 (331)
T ss_dssp CHHHCSSTTTT-HHHHHHHCCCCTT--SC-CCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-S----SEEEEECCGS
T ss_pred HHHHhCCcCcCcHHHHHHHHHHHHhcccc-ccccccccccccceeeccchhhhHHHHHHHHHhhCC----ceEEECCCCc
Confidence 44556677889888777766555322211 111 13344899999999999999997765541 2223332221
Q ss_pred cchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-Ccee-ecCCeEEE
Q psy14500 497 IEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTI-NFRNTIIV 574 (938)
Q Consensus 497 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~-~~~~~iiI 574 (938)
+.. .+...........+-..-.+.+-.+.+||.+|||+|++.....+.|+.+||.+.++... |... -..++.++
T Consensus 93 s~~----gLta~~~~d~~~~~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svl 168 (331)
T PF00493_consen 93 SAA----GLTASVSRDPVTGEWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVL 168 (331)
T ss_dssp TCC----CCCEEECCCGGTSSECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEE
T ss_pred ccC----CccceeccccccceeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhH
Confidence 110 01100000000000011235667778899999999999999999999999999998766 4333 24678899
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEE-ccCCCHHHHHHHHHHHHHHHHHH----------
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIV-FRYLNRKNILSIANIQLNILKNK---------- 643 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~-f~~l~~e~~~~i~~~~l~~~~~~---------- 643 (938)
+++|.....+.... .+.+ .-.++++|++|||.++. ..+.+++.=..+..+.+......
T Consensus 169 aa~NP~~g~~~~~~---------~~~~--ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~ 237 (331)
T PF00493_consen 169 AAANPKFGRYDPNK---------SLSE--NINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKK 237 (331)
T ss_dssp EEE--TT--S-TTS----------CGC--CT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------S
T ss_pred HHHhhhhhhcchhh---------hhHH--hcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccc
Confidence 99997443221100 0000 11378899999998655 46666554445555444332211
Q ss_pred ---------------HHccCCeEEEcHHHHHHHHh
Q psy14500 644 ---------------LLKMNMDLKISKAALKKISN 663 (938)
Q Consensus 644 ---------------~~~~~~~l~~~~~~~~~L~~ 663 (938)
+.+..+...+++++.++|.+
T Consensus 238 ~~~~~~~~~lr~yI~yar~~~~P~ls~ea~~~I~~ 272 (331)
T PF00493_consen 238 NDKPISEDLLRKYIAYARQNIHPVLSEEAKELIIN 272 (331)
T ss_dssp SS-TT-HCCCHHHHHHHHHHC--EE-HHCHHHHHH
T ss_pred cCCccCHHHHHHHHHHHHhhcccccCHHHHHHHHH
Confidence 11113556788888777766
No 481
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.55 E-value=5.9e-07 Score=97.33 Aligned_cols=109 Identities=23% Similarity=0.281 Sum_probs=72.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
+++|+||+|||||+||.+||+.+...+.++..+.++++...... .++.. ........+..+ .+|+|||+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~--~~~~~-------~~~~~l~~l~~~--dlLiIDDi 226 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN--SISDG-------SVKEKIDAVKEA--PVLMLDDI 226 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH--HHhcC-------cHHHHHHHhcCC--CEEEEecC
Confidence 79999999999999999999999877788888888776544221 11110 111222334444 49999999
Q ss_pred c--ccCHHHHHHHHH-hhcCCceecCCCceeecCCeEEEEecCCCchhhhhhh
Q psy14500 539 E--KANSDVFNILLQ-ILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 588 (938)
Q Consensus 539 d--~~~~~~~~~Ll~-~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~ 588 (938)
. .+++...+.++. +++. ++ ..+.-.|+|||...+.|.+++
T Consensus 227 G~e~~s~~~~~~ll~~Il~~-R~---------~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQY-RM---------QEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred CCccccHHHHHHHHHHHHHH-HH---------HCCCeEEEECCCCHHHHHHHH
Confidence 6 456666655554 4453 11 133457899999988876654
No 482
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.55 E-value=1.3e-06 Score=90.49 Aligned_cols=125 Identities=11% Similarity=0.028 Sum_probs=84.9
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCC-C-----------cCCCeEEEEehhhhhcCccccchHHHHHHHHHH
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPN-S-----------LLSKKILLLDIALLLAGTKYRGEFEDRLKKILK 117 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~-~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~ 117 (938)
+.+...||+||+|+||..+|.++|+.+.+..... . ..-.+++.+.... . .-....++.+..
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-----~--~I~id~ir~l~~ 77 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-----N--PIKKEDALSIIN 77 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-----c--cCCHHHHHHHHH
Confidence 3456689999999999999999999986643110 0 0001222221111 0 011224555555
Q ss_pred HHHh----cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--ceEEEEecChhHHHHhhhcCHHHHcccceEEe
Q psy14500 118 EISN----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAFERRFQKILV 191 (938)
Q Consensus 118 ~a~~----~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~ 191 (938)
.+.. .++..|++|+++|.|. .+++|.|+..+|.+ ++++|.+|+.++ .+.|+++|||..+.|
T Consensus 78 ~l~~~s~e~~~~KV~II~~ae~m~--------~~AaNaLLK~LEEPp~~t~fiLit~~~~-----~lLpTI~SRCq~~~~ 144 (261)
T PRK05818 78 KLNRPSVESNGKKIYIIYGIEKLN--------KQSANSLLKLIEEPPKNTYGIFTTRNEN-----NILNTILSRCVQYVV 144 (261)
T ss_pred HHccCchhcCCCEEEEeccHhhhC--------HHHHHHHHHhhcCCCCCeEEEEEECChH-----hCchHhhhheeeeec
Confidence 4432 2345799999999993 47889999999864 678888888887 899999999999888
Q ss_pred eCC
Q psy14500 192 EEP 194 (938)
Q Consensus 192 ~~p 194 (938)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 777
No 483
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.55 E-value=7.5e-07 Score=103.97 Aligned_cols=181 Identities=13% Similarity=0.164 Sum_probs=111.6
Q ss_pred CCCCccccHHHHHHHHHHHh--cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc----
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT---- 102 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~--~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~---- 102 (938)
.+..++|.+..+..+...+. .....++|+.|++||||+++|++++...... +.+++.++|..+....
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~-------~~~~~~i~c~~~~~~~~~~~ 213 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRRA-------KGPFIKVNCAALPESLLESE 213 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCCC-------CCCeEEEECCCCCHHHHHHH
Confidence 44578998888877777554 3455789999999999999999998865332 4578888886542100
Q ss_pred -------cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceE
Q psy14500 103 -------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELH 162 (938)
Q Consensus 103 -------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~ 162 (938)
.+.|.... -...+.. ....+|||||++.|. ...+..|...++.+ +++
T Consensus 214 lfg~~~~~~~~~~~~-~~g~~~~----a~~gtl~ld~i~~l~--------~~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 280 (457)
T PRK11361 214 LFGHEKGAFTGAQTL-RQGLFER----ANEGTLLLDEIGEMP--------LVLQAKLLRILQEREFERIGGHQTIKVDIR 280 (457)
T ss_pred hcCCCCCCCCCCCCC-CCCceEE----CCCCEEEEechhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeeceE
Confidence 00000000 0011111 123489999999994 35667777777543 368
Q ss_pred EEEecChhHHH--HhhhcCHHHHcccceEEeeCCCHHHHH----HHHHhhhhhhhcccC---CCCCHHHHHHHHHh
Q psy14500 163 CIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG---VEITDPAIVAASEL 229 (938)
Q Consensus 163 vI~~tn~~~~~--~~~~ld~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 229 (938)
+|++|+.+.-. ..-.+.+.+..|+..+.+..|+..+|. .+++.++.++....+ ..++++++..+..+
T Consensus 281 ii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 356 (457)
T PRK11361 281 IIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAW 356 (457)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC
Confidence 99999865311 112355678888877666666665554 455566655443222 35677776665543
No 484
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.54 E-value=1.4e-06 Score=101.85 Aligned_cols=180 Identities=17% Similarity=0.219 Sum_probs=112.4
Q ss_pred CCCccccHHHHHHHHHHHh--cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc-----
Q psy14500 30 LDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT----- 102 (938)
Q Consensus 30 ~~~lvG~~~~~~~l~~~l~--~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~----- 102 (938)
...++|.+..+..+...+. .....++++.|++||||+++|++++...... ..+++.++|..+....
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~-------~~~~~~~~c~~~~~~~~~~~l 205 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPRA-------NGPFIALNMAAIPKDLIESEL 205 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCCC-------CCCeEEEeCCCCCHHHHHHHh
Confidence 3468898887777776554 2445678999999999999999999865332 4578888876542100
Q ss_pred ------cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceEE
Q psy14500 103 ------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHC 163 (938)
Q Consensus 103 ------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~v 163 (938)
.+.|.... ....+. ...+..|||||++.|. .+.+..|..+++.+ ++++
T Consensus 206 fg~~~~~~~~~~~~-~~g~~~----~a~~gtl~l~ei~~l~--------~~~q~~ll~~l~~~~~~~~~~~~~~~~~~ri 272 (463)
T TIGR01818 206 FGHEKGAFTGANTR-RQGRFE----QADGGTLFLDEIGDMP--------LDAQTRLLRVLADGEFYRVGGRTPIKVDVRI 272 (463)
T ss_pred cCCCCCCCCCcccC-CCCcEE----ECCCCeEEEEchhhCC--------HHHHHHHHHHHhcCcEEECCCCceeeeeeEE
Confidence 00000000 000111 1123479999999993 45667777777643 4678
Q ss_pred EEecChhHHH--HhhhcCHHHHcccce--EEeeCCC--HHHHHHHHHhhhhhhhcccC---CCCCHHHHHHHHHh
Q psy14500 164 IGATTLNEYR--QYIEKDAAFERRFQK--ILVEEPD--IEETISILRGLQKKYEVHHG---VEITDPAIVAASEL 229 (938)
Q Consensus 164 I~~tn~~~~~--~~~~ld~al~~Rf~~--i~~~~p~--~~e~~~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 229 (938)
|++|+..--. ..-...+.|..|+.. |.+|++. .++...++++++.++....+ ..++++++..+..+
T Consensus 273 i~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (463)
T TIGR01818 273 VAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL 347 (463)
T ss_pred EEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 8888765311 112345678888875 5555554 45666777777776554443 45788877776654
No 485
>KOG2227|consensus
Probab=98.53 E-value=7.7e-07 Score=96.81 Aligned_cols=219 Identities=14% Similarity=0.181 Sum_probs=134.9
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHh--ccCCCceEEeccccccchhhhh-
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACI--FNNEESIIRIDMSEFIEKHSIS- 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l--~~~~~~~~~~~~~~~~~~~~~~- 503 (938)
..+.|.+.-+..+..++..+..+ ...+++.+.|-||||||.+...+-..+ .......++++|.++....++.
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~-----~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL-----NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc-----ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 45777777777777777655432 223479999999999998876544333 2223345888998877654332
Q ss_pred hhcCCC-CCCcccccc----chhHHHHHhC-CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEec
Q psy14500 504 RLIGAP-PGYIGYEEG----GYLTEIVRRK-PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 577 (938)
Q Consensus 504 ~l~g~~-~~~~g~~~~----~~l~~~~~~~-~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 577 (938)
.+++.- .+.++...+ ..+....... ..-++++||+|.+...-+..|+.+++.-. .+.++.++|...
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~--------lp~sr~iLiGiA 296 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK--------LPNSRIILIGIA 296 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc--------CCcceeeeeeeh
Confidence 222221 111222222 2232333333 35689999999999888888888887522 234556666666
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcC---CeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI---DDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~---~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
|. -++. .+|-|.|-.|+ ..++.|+|++.+++.+|+...+.. .. ...+-
T Consensus 297 Ns-------------lDlT--------dR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~-------~~-t~~~~ 347 (529)
T KOG2227|consen 297 NS-------------LDLT--------DRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSE-------ES-TSIFL 347 (529)
T ss_pred hh-------------hhHH--------HHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhc-------cc-ccccc
Confidence 63 1122 23444444433 248999999999999996655543 22 13344
Q ss_pred HHHHHHHHhhcccccccccccccchHHHHHHHHHhc
Q psy14500 655 KAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIH 690 (938)
Q Consensus 655 ~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~ 690 (938)
+.+++++++... ..-||+...++-+.++++-+.
T Consensus 348 ~~Aie~~ArKva---a~SGDlRkaLdv~R~aiEI~E 380 (529)
T KOG2227|consen 348 NAAIELCARKVA---APSGDLRKALDVCRRAIEIAE 380 (529)
T ss_pred hHHHHHHHHHhc---cCchhHHHHHHHHHHHHHHHH
Confidence 478888887543 335899999888888886443
No 486
>KOG2227|consensus
Probab=98.50 E-value=4.7e-06 Score=90.85 Aligned_cols=216 Identities=15% Similarity=0.184 Sum_probs=130.0
Q ss_pred HHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHh----cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeE
Q psy14500 15 KKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKI 90 (938)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~----~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~ 90 (938)
+.-+..+-..++| ..++|++.++..+..++. .+..+++.+.|.||||||.+...+...+.... .....
T Consensus 137 ~~~~~~l~~t~~p---~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-----~~~~~ 208 (529)
T KOG2227|consen 137 EQRSESLLNTAPP---GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-----KSPVT 208 (529)
T ss_pred HHHHHHHHhcCCC---CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-----cccee
Confidence 3334444555566 468899999998888765 46678899999999999999887766553321 12234
Q ss_pred EEEehhhhhcCcc--------------ccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhh--hhh
Q psy14500 91 LLLDIALLLAGTK--------------YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNM--LKP 154 (938)
Q Consensus 91 ~~~~~~~l~~~~~--------------~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~--L~~ 154 (938)
+.+++..+..... -.|...+.+..+-........+.++++||+|.|.... +.+.-. ..+
T Consensus 209 v~inc~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----~~vLy~lFewp 283 (529)
T KOG2227|consen 209 VYINCTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----QTVLYTLFEWP 283 (529)
T ss_pred EEEeeccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----cceeeeehhcc
Confidence 5566644321111 0111211222222223333447899999999997432 232111 123
Q ss_pred hccCCceEEEEecChhHHHHhhhcCHHHHcccc----eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhh
Q psy14500 155 ELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ----KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELS 230 (938)
Q Consensus 155 ~l~~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~----~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s 230 (938)
.+-...+++|+..|..++.+ ..-+.|..|+. .+.|++++.++...|+..-+... .-..+-+.+++.+++-.
T Consensus 284 ~lp~sr~iLiGiANslDlTd--R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~---~t~~~~~~Aie~~ArKv 358 (529)
T KOG2227|consen 284 KLPNSRIILIGIANSLDLTD--RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE---STSIFLNAAIELCARKV 358 (529)
T ss_pred cCCcceeeeeeehhhhhHHH--HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcc---cccccchHHHHHHHHHh
Confidence 33456789999999887543 33445555554 38999999999999997655542 22334445666655433
Q ss_pred ---hhccccCCCchhhhhHHHHHHHHH
Q psy14500 231 ---YRYISDRFMPDKAIDLIDEAAAKI 254 (938)
Q Consensus 231 ---~~~~~~~~~p~~a~~ll~~a~~~~ 254 (938)
.|++ ++|.++++.+..-+
T Consensus 359 aa~SGDl------RkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 359 AAPSGDL------RKALDVCRRAIEIA 379 (529)
T ss_pred ccCchhH------HHHHHHHHHHHHHH
Confidence 2334 77777777665443
No 487
>PRK06921 hypothetical protein; Provisional
Probab=98.48 E-value=2.8e-07 Score=98.07 Aligned_cols=105 Identities=16% Similarity=0.232 Sum_probs=67.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccC-CCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 536 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 536 (938)
.+++|+||||||||+||.+|++.+... +..++.+...++.... ...+ +........+..+ .+|+||
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l--~~~~---------~~~~~~~~~~~~~--dlLiID 184 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDL--KDDF---------DLLEAKLNRMKKV--EVLFID 184 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHH--HHHH---------HHHHHHHHHhcCC--CEEEEe
Confidence 379999999999999999999998665 6667777665443221 0000 0001111223333 599999
Q ss_pred cccc-------cCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 537 EIEK-------ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 537 Eid~-------~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
|++. .+...++.|+.+++... ..+.-+|+|||..+..+.
T Consensus 185 Dl~~~~~g~e~~t~~~~~~lf~iin~R~----------~~~k~tIitsn~~~~el~ 230 (266)
T PRK06921 185 DLFKPVNGKPRATEWQIEQMYSVLNYRY----------LNHKPILISSELTIDELL 230 (266)
T ss_pred ccccccCCCccCCHHHHHHHHHHHHHHH----------HCCCCEEEECCCCHHHHh
Confidence 9943 55666778888887411 112236889999877664
No 488
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.47 E-value=1.4e-06 Score=101.92 Aligned_cols=225 Identities=12% Similarity=0.110 Sum_probs=133.0
Q ss_pred HHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCC----CCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc
Q psy14500 419 LNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAK----RPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 494 (938)
Q Consensus 419 ~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~----~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 494 (938)
..+-+.+--.|.|.+.+++++.-.+-..... ..+. +..-++||.|.||||||.|-+.+++.+.+ .-+.+...+
T Consensus 278 ~~l~~SiaPsIyG~e~VKkAilLqLfgGv~k-~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr--~vytsgkgs 354 (682)
T COG1241 278 DILIKSIAPSIYGHEDVKKAILLQLFGGVKK-NLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR--GVYTSGKGS 354 (682)
T ss_pred HHHHHHhcccccCcHHHHHHHHHHhcCCCcc-cCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc--eEEEccccc
Confidence 3455667778999999999888877533211 1121 23358999999999999999999988721 112222222
Q ss_pred cccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-Cce-eecCCeE
Q psy14500 495 EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRT-INFRNTI 572 (938)
Q Consensus 495 ~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~-~~~~~~i 572 (938)
.-..-.. ... ..+ ..| +--.-.+++-.+.+||..|||+|+|+....++|...||...++... |-. .-..++-
T Consensus 355 s~~GLTA--av~-rd~-~tg--e~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcs 428 (682)
T COG1241 355 SAAGLTA--AVV-RDK-VTG--EWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCS 428 (682)
T ss_pred cccCcee--EEE-Ecc-CCC--eEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhh
Confidence 1110000 000 000 011 0001123455677899999999999999999999999999888765 422 2236677
Q ss_pred EEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEc-cCCCHHHHHHHHHHHHHHHH----------
Q psy14500 573 IVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVF-RYLNRKNILSIANIQLNILK---------- 641 (938)
Q Consensus 573 iI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f-~~l~~e~~~~i~~~~l~~~~---------- 641 (938)
+++++|.....+.... +. .+ .=.|+++|++|||.++.. ..++++.=..+..+.+....
T Consensus 429 vLAAaNP~~Gryd~~~--~~--~e-------nI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~ 497 (682)
T COG1241 429 VLAAANPKFGRYDPKK--TV--AE-------NINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISL 497 (682)
T ss_pred hhhhhCCCCCcCCCCC--CH--HH-------hcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhcccccccccc
Confidence 8888886443211100 00 00 114789999999985444 44555444455554444331
Q ss_pred ---------------H--HHHccCCeEEEcHHHHHHHHh
Q psy14500 642 ---------------N--KLLKMNMDLKISKAALKKISN 663 (938)
Q Consensus 642 ---------------~--~~~~~~~~l~~~~~~~~~L~~ 663 (938)
. .+++..+...+++++.+.|.+
T Consensus 498 ~~~~~~~~~~~~~lrkYI~YAR~~v~P~lt~ea~e~l~~ 536 (682)
T COG1241 498 DGVDEVEERDFELLRKYISYARKNVTPVLTEEAREELED 536 (682)
T ss_pred ccccccccCcHHHHHHHHHHHhccCCcccCHHHHHHHHH
Confidence 0 112223556788888888766
No 489
>KOG1051|consensus
Probab=98.46 E-value=5.5e-07 Score=107.49 Aligned_cols=121 Identities=22% Similarity=0.396 Sum_probs=89.3
Q ss_pred CccccHHHHHHHHHHHhcC--------CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh------
Q psy14500 32 PVIGRDDEIRRAIQVLQRR--------SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL------ 97 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~~--------~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~------ 97 (938)
.++||++++..+...+.+. +...+||.||.|+|||-+|+++|..+... .-.++.+|++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs-------e~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS-------EENFIRLDMSEFQEVSK 635 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC-------ccceEEechhhhhhhhh
Confidence 5799999999999987632 23347999999999999999999998554 45778888875
Q ss_pred hh-cCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceEE
Q psy14500 98 LL-AGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHC 163 (938)
Q Consensus 98 l~-~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~v 163 (938)
+. +...|+|..+ ...+.+.++ ..+.+|+++||||.. ..++++.|++++++| +++|
T Consensus 636 ligsp~gyvG~e~--gg~Lteavr-rrP~sVVLfdeIEkA--------h~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 636 LIGSPPGYVGKEE--GGQLTEAVK-RRPYSVVLFEEIEKA--------HPDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred ccCCCcccccchh--HHHHHHHHh-cCCceEEEEechhhc--------CHHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 22 2234666554 334444444 566789999999987 347888999999765 4678
Q ss_pred EEecChh
Q psy14500 164 IGATTLN 170 (938)
Q Consensus 164 I~~tn~~ 170 (938)
|.|+|-.
T Consensus 705 IMTsn~~ 711 (898)
T KOG1051|consen 705 IMTSNVG 711 (898)
T ss_pred EEecccc
Confidence 8888764
No 490
>PF13173 AAA_14: AAA domain
Probab=98.43 E-value=1.3e-06 Score=82.41 Aligned_cols=121 Identities=25% Similarity=0.323 Sum_probs=79.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHH-Hh--CCCEEEEE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV-RR--KPYSLILL 535 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~-~~--~~~~vl~l 535 (938)
.++++||.|||||++++.+++.+. ....++.+++.+........ .. +...+ +. ....+|||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~i~i 67 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLAD--------------PD-LLEYFLELIKPGKKYIFI 67 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhh--------------hh-hHHHHHHhhccCCcEEEE
Confidence 689999999999999999998875 44678888887755421110 00 11111 11 24579999
Q ss_pred ccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcC
Q psy14500 536 DEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI 615 (938)
Q Consensus 536 DEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~ 615 (938)
|||+.++ +....+-.+.+.+ .+..+|+|+..... +.......+.+|.
T Consensus 68 DEiq~~~-~~~~~lk~l~d~~------------~~~~ii~tgS~~~~--------------------l~~~~~~~l~gr~ 114 (128)
T PF13173_consen 68 DEIQYLP-DWEDALKFLVDNG------------PNIKIILTGSSSSL--------------------LSKDIAESLAGRV 114 (128)
T ss_pred ehhhhhc-cHHHHHHHHHHhc------------cCceEEEEccchHH--------------------HhhcccccCCCeE
Confidence 9999996 5666666666642 34456666654222 1223456677888
Q ss_pred CeEEEccCCCHHHH
Q psy14500 616 DDIIVFRYLNRKNI 629 (938)
Q Consensus 616 ~~~i~f~~l~~e~~ 629 (938)
..+.+.|++-+|+
T Consensus 115 -~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 115 -IEIELYPLSFREF 127 (128)
T ss_pred -EEEEECCCCHHHh
Confidence 4899999987764
No 491
>PRK08181 transposase; Validated
Probab=98.42 E-value=7.1e-07 Score=94.51 Aligned_cols=126 Identities=15% Similarity=0.217 Sum_probs=71.8
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEE
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 130 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~i 130 (938)
...|++|+||||||||+|+.++++.+... +..++.++...+...-.. ......+...+..+... -+|+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~~~~~L~~~l~~-a~~~~~~~~~l~~l~~~---dLLII 173 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFTRTTDLVQKLQV-ARRELQLESAIAKLDKF---DLLIL 173 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeeeeHHHHHHHHHH-HHhCCcHHHHHHHHhcC---CEEEE
Confidence 45789999999999999999999987543 556666676655431110 00001233444444433 39999
Q ss_pred eCccccccCCCCCCccchhhhhhhhc----cCCceEEEEecChh--HHHHhhh---cCHHHHcccc----eEEeeCCC
Q psy14500 131 DELHTMIGTGKVEGSIDAGNMLKPEL----SRGELHCIGATTLN--EYRQYIE---KDAAFERRFQ----KILVEEPD 195 (938)
Q Consensus 131 DEid~l~~~~~~~~~~~~~~~L~~~l----~~~~i~vI~~tn~~--~~~~~~~---ld~al~~Rf~----~i~~~~p~ 195 (938)
||++.+..+. .....|..++ ++ -.+|.|||.+ +|...+. +..++.+|+- .|.|.-.|
T Consensus 174 DDlg~~~~~~------~~~~~Lf~lin~R~~~--~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s 243 (269)
T PRK08181 174 DDLAYVTKDQ------AETSVLFELISARYER--RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVES 243 (269)
T ss_pred eccccccCCH------HHHHHHHHHHHHHHhC--CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCcc
Confidence 9999774421 2233344444 33 3566677653 3333221 2245666662 25555544
No 492
>PF05729 NACHT: NACHT domain
Probab=98.38 E-value=3.7e-06 Score=83.18 Aligned_cols=149 Identities=17% Similarity=0.218 Sum_probs=82.9
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccc----------cchHHHHHHHHHHHHHhcCC
Q psy14500 55 PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKY----------RGEFEDRLKKILKEISNNQK 124 (938)
Q Consensus 55 vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~~l~~~~~~a~~~~~ 124 (938)
++|+|+||+|||++++.++..+.....+... ..-++.+.+......... ...........+..+.....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 6889999999999999999988665432111 112223333332211110 00000111222233334566
Q ss_pred CeEEEEeCccccccCCCCCCccchhhhhhhhccC---CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHH
Q psy14500 125 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETIS 201 (938)
Q Consensus 125 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~ 201 (938)
+++|+||.+|.+...............|...+.. .++.+|.++++..+.. ..........+.+.+.+.+++.+
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~ 157 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPD----LRRRLKQAQILELEPFSEEDIKQ 157 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHH----HHHhcCCCcEEEECCCCHHHHHH
Confidence 8899999999997643221122233445445543 4567777776654211 11122222458999999999999
Q ss_pred HHHhhhh
Q psy14500 202 ILRGLQK 208 (938)
Q Consensus 202 il~~~~~ 208 (938)
+++.+..
T Consensus 158 ~~~~~f~ 164 (166)
T PF05729_consen 158 YLRKYFS 164 (166)
T ss_pred HHHHHhh
Confidence 9876543
No 493
>KOG2680|consensus
Probab=98.38 E-value=9.1e-06 Score=83.17 Aligned_cols=114 Identities=24% Similarity=0.206 Sum_probs=80.2
Q ss_pred CeEEEEeCccccccCCCCCCccchhhhhhhhccCC-ceEEEEecChh-------HHHHhhhcCHHHHcccceEEeeCCCH
Q psy14500 125 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLN-------EYRQYIEKDAAFERRFQKILVEEPDI 196 (938)
Q Consensus 125 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-~i~vI~~tn~~-------~~~~~~~ld~al~~Rf~~i~~~~p~~ 196 (938)
|.||||||+|.| +.+....|...+++. .-++|.+||+- +|..-..++-.|++|+-.|...+++.
T Consensus 289 pGVLFIDEvHML--------DIEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~ 360 (454)
T KOG2680|consen 289 PGVLFIDEVHML--------DIECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTE 360 (454)
T ss_pred cceEEEeeehhh--------hhHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcH
Confidence 569999999998 345666777777643 23444445531 22334578899999999999999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHH
Q psy14500 197 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 197 ~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 255 (938)
++...||+.-+.. +++.+++++++.+...... ..-+.++.++..+...+.
T Consensus 361 ~d~~~IL~iRc~E----Edv~m~~~A~d~Lt~i~~~-----tsLRYai~Lit~a~~~~~ 410 (454)
T KOG2680|consen 361 EDIKKILRIRCQE----EDVEMNPDALDLLTKIGEA-----TSLRYAIHLITAASLVCL 410 (454)
T ss_pred HHHHHHHHhhhhh----hccccCHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHH
Confidence 9999999877764 6899999999988776432 112556666655544443
No 494
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.38 E-value=6.2e-06 Score=85.43 Aligned_cols=133 Identities=22% Similarity=0.316 Sum_probs=80.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
.-.+.||+|||||+.++.+|+.+ +..++.++|++-.+...+.++ +.+.... ++++.|||+
T Consensus 34 ~~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~~~l~ri---------------l~G~~~~--GaW~cfdef 93 (231)
T PF12774_consen 34 GGALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDYQSLSRI---------------LKGLAQS--GAWLCFDEF 93 (231)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-HHHHHHH---------------HHHHHHH--T-EEEEETC
T ss_pred CCCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccHHHHHHH---------------HHHHhhc--Cchhhhhhh
Confidence 35689999999999999999999 899999999987766555433 3344443 469999999
Q ss_pred cccCHHHHHHHHHhhc-------CC--ceecCCCceeec-CCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccC
Q psy14500 539 EKANSDVFNILLQILD-------DG--RLTDNRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFR 608 (938)
Q Consensus 539 d~~~~~~~~~Ll~~le-------~g--~~~~~~g~~~~~-~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 608 (938)
++++.+++..+.+.+. ++ ++.. .|..+.. .++-+.+|.|.+... ...++
T Consensus 94 nrl~~~vLS~i~~~i~~i~~al~~~~~~~~~-~g~~i~l~~~~~iFiT~np~y~g--------------------r~~LP 152 (231)
T PF12774_consen 94 NRLSEEVLSVISQQIQSIQDALRAKQKSFTL-EGQEIKLNPNCGIFITMNPGYAG--------------------RSELP 152 (231)
T ss_dssp CCSSHHHHHHHHHHHHHHHHHHHCTSSEEEE-TTCEEE--TT-EEEEEE-B-CCC--------------------C--S-
T ss_pred hhhhHHHHHHHHHHHHHHHHhhccccccccc-CCCEEEEccceeEEEeeccccCC--------------------cccCC
Confidence 9999988777755543 21 2222 2444443 345566677765421 12355
Q ss_pred hHHhhcCCeEEEccCCCHHHHHHHH
Q psy14500 609 PEFINRIDDIIVFRYLNRKNILSIA 633 (938)
Q Consensus 609 ~~l~~R~~~~i~f~~l~~e~~~~i~ 633 (938)
+.+..-| ..|.+..++...+.++.
T Consensus 153 ~nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 153 ENLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHHCTTE-EEEE--S--HHHHHHHH
T ss_pred HhHHHHh-heeEEeCCCHHHHHHHH
Confidence 5555555 67788888777666664
No 495
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.38 E-value=9.7e-06 Score=93.71 Aligned_cols=218 Identities=16% Similarity=0.206 Sum_probs=110.6
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEe-ccccccchh-hhhhhcCC
Q psy14500 431 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI-DMSEFIEKH-SISRLIGA 508 (938)
Q Consensus 431 Gq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~-~~~~~~~~~-~~~~l~g~ 508 (938)
-+..-++.|..++.....+ ..+...+||+||||||||++++.||+.+ +..+..- +...+.... ......+.
T Consensus 23 vhkkKv~eV~~wl~~~~~~----~~~~~iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~np~~~~~~~~~~~d~~s~ 95 (519)
T PF03215_consen 23 VHKKKVEEVRSWLEEMFSG----SSPKRILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWINPVSFRESDNQEDDFESD 95 (519)
T ss_pred ccHHHHHHHHHHHHHHhcc----CCCcceEEEECCCCCCHHHHHHHHHHHh---CCeeEEecCCCCcccccccccccccc
Confidence 3344466777777654322 1122268899999999999999999998 2222211 111100000 00000000
Q ss_pred ---CCCCccccccchhHHH-H--------------HhCCCEEEEEccccccC----HHHHHHHHHhhcCCceecCCCcee
Q psy14500 509 ---PPGYIGYEEGGYLTEI-V--------------RRKPYSLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGRTI 566 (938)
Q Consensus 509 ---~~~~~g~~~~~~l~~~-~--------------~~~~~~vl~lDEid~~~----~~~~~~Ll~~le~g~~~~~~g~~~ 566 (938)
...|.+. ...+..+ + ......||+|||+-... ..+.+.|.+++..+..
T Consensus 96 ~~~~~~f~sq--~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~-------- 165 (519)
T PF03215_consen 96 FNKFDEFLSQ--SDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRC-------- 165 (519)
T ss_pred ccccccccch--hhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCCC--------
Confidence 0000000 0001011 0 11245799999985322 4566777777764221
Q ss_pred ecCCeEEEEe--cCC-CchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCC-eEEEccCCCHHHHHHHHHHHHHHHHH
Q psy14500 567 NFRNTIIVMT--SNL-GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKN 642 (938)
Q Consensus 567 ~~~~~iiI~t--tn~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~e~~~~i~~~~l~~~~~ 642 (938)
...+||+| ... +...... -.-.....|++++++... .+|.|.|+...-+.+.+.+.+..-..
T Consensus 166 --~PlV~iiSe~~~~~~~~~~~~------------~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~ 231 (519)
T PF03215_consen 166 --LPLVFIISETESLSGDNSYRS------------NSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEAR 231 (519)
T ss_pred --CCEEEEEecccccCCCCcccc------------cchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhh
Confidence 14566666 111 1110000 000113357888887553 38999999998888887776655332
Q ss_pred HHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 643 KLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 643 ~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
..... ....-..++++.|+.. ..|||..++..|+-.-
T Consensus 232 ~~~~~-~~~p~~~~~l~~I~~~------s~GDIRsAIn~LQf~~ 268 (519)
T PF03215_consen 232 SSSGK-NKVPDKQSVLDSIAES------SNGDIRSAINNLQFWC 268 (519)
T ss_pred hhcCC-ccCCChHHHHHHHHHh------cCchHHHHHHHHHHHh
Confidence 22111 1111224568888762 3589988866666444
No 496
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.38 E-value=4.1e-06 Score=84.61 Aligned_cols=146 Identities=15% Similarity=0.138 Sum_probs=100.6
Q ss_pred HHHHHHHHhhhcCCCCCCCCceEEEEeCCCC-CcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCC------
Q psy14500 437 SAVSNAIRRSRSGLSDAKRPYGSFMFLGPTG-VGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAP------ 509 (938)
Q Consensus 437 ~~l~~~l~~~~~~~~~~~~~~~~iLl~GppG-tGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~------ 509 (938)
..+.+.++..+.. +.+||.|..+ +||..++.-++..++..+. .... +.....+...
T Consensus 3 ~~L~~~iq~~kLs--------hAYLfeG~n~~~~~~~~~~f~~~~l~~~~i-----~~~~----HPD~~~I~pe~~~~~~ 65 (263)
T PRK06581 3 ERLEFNLKHNKLY--------NSWLIEAENIEQALKDLEKFIYIKLFKNSI-----PLEN----NPDYHFIARETSATSN 65 (263)
T ss_pred HHHHHHHHcCcch--------heeeEeCCChhhHHHHHHHHHHHHHhccCc-----ccCC----CCCEEEEecccccccc
Confidence 4555566544433 4799999998 9999999999988854321 1111 0000111111
Q ss_pred CCCccccccchhHHHHH----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 510 PGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 510 ~~~~g~~~~~~l~~~~~----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
...++.+..+.+...+. .++..|++|+++|+|..++.|+||+.||+ +..+++||++|....
T Consensus 66 ~~~I~IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEE-----------PP~~t~fILit~~~~---- 130 (263)
T PRK06581 66 AKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILED-----------APKNSYIFLITSRAA---- 130 (263)
T ss_pred CCcccHHHHHHHHHHHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcC-----------CCCCeEEEEEeCChh----
Confidence 12344455566666554 34578999999999999999999999998 778888888777532
Q ss_pred hhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHH
Q psy14500 586 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI 635 (938)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~ 635 (938)
.+.|.++||| ..+.|+++......+....
T Consensus 131 --------------------~LLpTIrSRC-q~i~~~~p~~~~~~e~~~~ 159 (263)
T PRK06581 131 --------------------SIISTIRSRC-FKINVRSSILHAYNELYSQ 159 (263)
T ss_pred --------------------hCchhHhhce-EEEeCCCCCHHHHHHHHHH
Confidence 4678999999 5999999988766666443
No 497
>KOG0480|consensus
Probab=98.36 E-value=1.8e-06 Score=96.95 Aligned_cols=200 Identities=17% Similarity=0.161 Sum_probs=121.6
Q ss_pred HHHHHHHHHhhccccChHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14500 416 EKLLNIENLLCKRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 492 (938)
Q Consensus 416 ~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~---~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 492 (938)
....+|-..|.-.|.|.+.++..+.-.+--... +-.-+-+...+++++|.||+|||.+-++.+..+.+ .-+.+-+
T Consensus 334 nly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR--~vYtsGk 411 (764)
T KOG0480|consen 334 NLYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR--SVYTSGK 411 (764)
T ss_pred hHHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc--ceEecCc
Confidence 445677888999999999999998887743211 11223344558999999999999999999877621 1111111
Q ss_pred cccccchhhhhhhcCCCCCCccccccc---hhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-Cceee-
Q psy14500 493 MSEFIEKHSISRLIGAPPGYIGYEEGG---YLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTIN- 567 (938)
Q Consensus 493 ~~~~~~~~~~~~l~g~~~~~~g~~~~~---~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~~- 567 (938)
.+.-. .| ....+...+.+ .-.+++-.+.+||=-|||+|||+..-|-+|...||.-.++... |....
T Consensus 412 aSSaA------GL---TaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTL 482 (764)
T KOG0480|consen 412 ASSAA------GL---TAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATL 482 (764)
T ss_pred ccccc------cc---eEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEee
Confidence 11100 00 00000000111 1123445567899999999999999999999999988777655 43332
Q ss_pred cCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCHHHHHHHHHHHH
Q psy14500 568 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 568 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~e~~~~i~~~~l 637 (938)
..++-||+++|.-.....+ ...+... =.+++++++|||. +|.+...++..=..|..+.+
T Consensus 483 nARtSIlAAANPv~GhYdR---------~ktl~eN--i~msApimSRFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 483 NARTSILAAANPVGGHYDR---------KKTLREN--INMSAPIMSRFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred cchhhhhhhcCCcCCcccc---------ccchhhh--cCCCchhhhhhcEEEEEecCCchHHHHHHHHHHH
Confidence 2456677888863322211 0011111 1478999999997 55566666654444444433
No 498
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.36 E-value=5.8e-06 Score=96.04 Aligned_cols=175 Identities=13% Similarity=0.181 Sum_probs=110.5
Q ss_pred CCccccHHHHHHHHHHHh--cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchH
Q psy14500 31 DPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF 108 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~--~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~ 108 (938)
..++|....+..+...+. .....+++++|++||||+++|++++...... ..+++.++|+.+.. .
T Consensus 139 ~~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~-------~~~~i~~~c~~~~~--~----- 204 (441)
T PRK10365 139 FGMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSARS-------EKPLVTLNCAALNE--S----- 204 (441)
T ss_pred cceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCCC-------CCCeeeeeCCCCCH--H-----
Confidence 357888877777665443 3445789999999999999999999765332 46788888865421 0
Q ss_pred HHHHHH-HHHHH--------------HhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------c
Q psy14500 109 EDRLKK-ILKEI--------------SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------E 160 (938)
Q Consensus 109 ~~~l~~-~~~~a--------------~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~ 160 (938)
.+.. +|... .....+.+|||||++.|.+ +.+..|...++.+ +
T Consensus 205 --~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~~--------~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (441)
T PRK10365 205 --LLESELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDISP--------MMQVRLLRAIQEREVQRVGSNQTISVD 274 (441)
T ss_pred --HHHHHhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCCH--------HHHHHHHHHHccCcEEeCCCCceeeec
Confidence 1111 11100 0011244899999999943 5667777777654 3
Q ss_pred eEEEEecChhHHHH--hhhcCHHHHcccceEEeeCCCHHHHH----HHHHhhhhhhhcccC---CCCCHHHHHHHHHh
Q psy14500 161 LHCIGATTLNEYRQ--YIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG---VEITDPAIVAASEL 229 (938)
Q Consensus 161 i~vI~~tn~~~~~~--~~~ld~al~~Rf~~i~~~~p~~~e~~----~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 229 (938)
+++|++|+.+.... .-.+.+.|..|+..+.+..|+..+|. .+++.++.++....+ ..++++++..+...
T Consensus 275 ~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (441)
T PRK10365 275 VRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 (441)
T ss_pred eEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 56888887754221 12356667778877677666665554 556666665443322 34788887777665
No 499
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.36 E-value=1.3e-06 Score=92.30 Aligned_cols=119 Identities=23% Similarity=0.384 Sum_probs=69.9
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccc---cchHHHHHHHHHHHHHhcCCCeE
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKY---RGEFEDRLKKILKEISNNQKDII 127 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~---~g~~~~~l~~~~~~a~~~~~~~i 127 (938)
...|++|+||||||||+||-|+++++... +..++.+...++...-+. .|..+.. +...+...+ +
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~-------g~sv~f~~~~el~~~Lk~~~~~~~~~~~---l~~~l~~~d---l 170 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKA-------GISVLFITAPDLLSKLKAAFDEGRLEEK---LLRELKKVD---L 170 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHc-------CCeEEEEEHHHHHHHHHHHHhcCchHHH---HHHHhhcCC---E
Confidence 67899999999999999999999999643 677888888766532110 1222222 222233333 9
Q ss_pred EEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChh--HHHHhhhc---CHHHHccc
Q psy14500 128 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN--EYRQYIEK---DAAFERRF 186 (938)
Q Consensus 128 L~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~--~~~~~~~l---d~al~~Rf 186 (938)
|||||+.....+. .....+...+....++... |.|+|.+ ++...+.. ..++.+|+
T Consensus 171 LIiDDlG~~~~~~--~~~~~~~q~I~~r~~~~~~--~~tsN~~~~~~~~~~~~~~~~e~~~dRi 230 (254)
T COG1484 171 LIIDDIGYEPFSQ--EEADLLFQLISRRYESRSL--IITSNLSFGEWDELFGDDALTEALLDRI 230 (254)
T ss_pred EEEecccCccCCH--HHHHHHHHHHHHHHhhccc--eeecCCChHHHHhhccCchhHHHHHHHH
Confidence 9999998763321 0111223334444455555 6676654 33333332 25565555
No 500
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.35 E-value=3e-06 Score=92.59 Aligned_cols=122 Identities=19% Similarity=0.258 Sum_probs=69.5
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc---ccchHHHHHHHHHHHHHhcCCCeE
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK---YRGEFEDRLKKILKEISNNQKDII 127 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~l~~~~~~a~~~~~~~i 127 (938)
...+++|+||+|||||+|+.++|+.+... +..++.++...+..... +.... .....+..+...+ +
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~t~~~l~~~l~~~~~~~~~--~~~~~~~~l~~~D---L 249 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYRTADELIEILREIRFNNDK--ELEEVYDLLINCD---L 249 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEEHHHHHHHHHHHHhccch--hHHHHHHHhccCC---E
Confidence 34889999999999999999999998653 55677777766542111 00100 1112244444444 9
Q ss_pred EEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHHHHcccc
Q psy14500 128 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ 187 (938)
Q Consensus 128 L~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~ 187 (938)
|+|||+.....+. .....+.+.+-..+..+ -.+|.|||...-.-...+++.+.+|+.
T Consensus 250 LIIDDlG~e~~t~--~~~~~Lf~iin~R~~~~-k~tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 250 LIIDDLGTEKITE--FSKSELFNLINKRLLRQ-KKMIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred EEEeccCCCCCCH--HHHHHHHHHHHHHHHCC-CCEEEECCCCHHHHHHHHhHHHHHHHH
Confidence 9999998763321 00112233333333333 356666765321111235678888884
Done!