Query psy14500
Match_columns 938
No_of_seqs 575 out of 5521
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 21:26:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14500.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14500hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 3.2E-74 1.1E-78 713.6 62.1 692 7-714 146-839 (854)
2 3pxi_A Negative regulator of g 100.0 3.9E-65 1.3E-69 626.2 49.0 589 7-714 156-744 (758)
3 1r6b_X CLPA protein; AAA+, N-t 100.0 4.2E-63 1.4E-67 609.8 48.7 571 8-714 163-735 (758)
4 2dfj_A Diadenosinetetraphospha 100.0 1.1E-42 3.9E-47 370.9 21.7 262 670-937 4-268 (280)
5 3cf2_A TER ATPase, transitiona 100.0 3.2E-38 1.1E-42 376.8 27.4 409 28-637 201-661 (806)
6 3pxg_A Negative regulator of g 100.0 3.2E-33 1.1E-37 322.4 27.8 289 7-316 156-444 (468)
7 4fcw_A Chaperone protein CLPB; 100.0 3E-31 1E-35 291.4 27.0 294 413-714 3-298 (311)
8 1ypw_A Transitional endoplasmi 100.0 6.6E-31 2.2E-35 321.1 11.5 420 25-638 198-662 (806)
9 2qjc_A Diadenosine tetraphosph 99.9 4.2E-26 1.4E-30 241.9 13.0 212 668-937 20-246 (262)
10 4b4t_J 26S protease regulatory 99.9 1.2E-23 4E-28 231.1 25.4 202 26-255 143-370 (405)
11 3hws_A ATP-dependent CLP prote 99.9 8.7E-25 3E-29 244.9 14.2 256 418-691 6-324 (363)
12 4b4t_I 26S protease regulatory 99.9 2.3E-23 8E-28 228.8 22.8 202 26-255 177-404 (437)
13 4b4t_H 26S protease regulatory 99.9 9.2E-23 3.1E-27 226.4 25.6 200 28-255 206-431 (467)
14 4b4t_M 26S protease regulatory 99.9 5.3E-23 1.8E-27 229.8 20.8 201 26-254 176-402 (434)
15 4b4t_L 26S protease subunit RP 99.9 1.1E-22 3.7E-27 227.6 23.1 201 27-255 177-403 (437)
16 1jbk_A CLPB protein; beta barr 99.9 5.3E-23 1.8E-27 208.3 17.3 194 10-203 1-194 (195)
17 4b4t_K 26S protease regulatory 99.9 4.9E-22 1.7E-26 222.0 24.5 201 27-255 168-395 (428)
18 2z72_A Protein-tyrosine-phosph 99.9 6.7E-23 2.3E-27 225.5 14.2 226 668-937 72-328 (342)
19 2p65_A Hypothetical protein PF 99.9 3E-22 1E-26 201.7 15.8 186 10-195 1-187 (187)
20 1um8_A ATP-dependent CLP prote 99.9 7.6E-22 2.6E-26 222.2 18.2 254 418-688 12-338 (376)
21 1ojl_A Transcriptional regulat 99.9 1.1E-21 3.8E-26 213.0 17.3 227 427-686 2-232 (304)
22 2qp9_X Vacuolar protein sortin 99.9 6.2E-21 2.1E-25 212.0 21.4 217 10-253 30-267 (355)
23 3eie_A Vacuolar protein sortin 99.9 7.4E-21 2.5E-25 209.1 19.4 203 22-251 9-232 (322)
24 1ofh_A ATP-dependent HSL prote 99.8 1.6E-20 5.4E-25 205.7 19.9 233 418-688 6-272 (310)
25 1g41_A Heat shock protein HSLU 99.8 3.1E-20 1.1E-24 207.8 21.6 249 418-693 6-411 (444)
26 2bjv_A PSP operon transcriptio 99.8 1.2E-20 4.1E-25 201.7 17.2 226 427-686 6-237 (265)
27 1ny5_A Transcriptional regulat 99.8 3.6E-20 1.2E-24 208.1 21.3 264 384-686 97-367 (387)
28 1xwi_A SKD1 protein; VPS4B, AA 99.8 6.1E-20 2.1E-24 201.2 21.2 200 26-251 7-227 (322)
29 3d8b_A Fidgetin-like protein 1 99.8 7.5E-20 2.6E-24 203.7 20.7 210 14-250 67-298 (357)
30 3pvs_A Replication-associated 99.8 4.5E-20 1.5E-24 210.1 18.5 201 19-255 14-223 (447)
31 3vfd_A Spastin; ATPase, microt 99.8 4.5E-20 1.5E-24 208.4 18.2 194 19-234 103-318 (389)
32 3m6a_A ATP-dependent protease 99.8 7.1E-21 2.4E-25 222.8 11.3 252 394-687 49-313 (543)
33 3dzd_A Transcriptional regulat 99.8 8.8E-20 3E-24 203.1 17.5 225 428-686 130-358 (368)
34 3b9p_A CG5977-PA, isoform A; A 99.8 2.4E-19 8E-24 195.1 19.5 196 17-234 7-225 (297)
35 2zan_A Vacuolar protein sortin 99.8 9.8E-20 3.3E-24 208.4 16.5 206 20-251 123-349 (444)
36 3cf2_A TER ATPase, transitiona 99.8 2.9E-20 1E-24 222.3 11.9 198 29-254 475-698 (806)
37 3h4m_A Proteasome-activating n 99.8 3.3E-18 1.1E-22 184.8 24.9 203 26-256 12-240 (285)
38 3cf0_A Transitional endoplasmi 99.8 5.1E-19 1.8E-23 192.3 16.3 201 25-253 9-235 (301)
39 2c9o_A RUVB-like 1; hexameric 99.8 5E-20 1.7E-24 212.0 8.7 170 19-204 24-236 (456)
40 1g5b_A Serine/threonine protei 99.8 6.1E-20 2.1E-24 190.2 8.2 195 668-931 14-220 (221)
41 3u61_B DNA polymerase accessor 99.8 4.8E-19 1.7E-23 195.2 15.2 198 17-251 12-220 (324)
42 3pfi_A Holliday junction ATP-d 99.8 1.9E-18 6.3E-23 191.7 19.6 197 15-255 13-235 (338)
43 3hu3_A Transitional endoplasmi 99.8 3E-18 1E-22 196.8 19.8 204 23-254 196-422 (489)
44 2qz4_A Paraplegin; AAA+, SPG7, 99.8 7.2E-18 2.5E-22 179.7 21.3 201 27-254 2-229 (262)
45 2ce7_A Cell division protein F 99.8 1.1E-17 3.9E-22 190.2 22.2 200 28-255 13-237 (476)
46 3syl_A Protein CBBX; photosynt 99.8 2.8E-18 9.6E-23 187.7 15.8 215 416-686 20-259 (309)
47 4b4t_J 26S protease regulatory 99.8 3.6E-18 1.2E-22 187.6 16.1 188 426-678 147-361 (405)
48 1iqp_A RFCS; clamp loader, ext 99.8 9.2E-18 3.1E-22 185.1 18.9 203 13-251 7-216 (327)
49 3syl_A Protein CBBX; photosynt 99.8 8.7E-18 3E-22 183.8 18.4 208 32-252 32-260 (309)
50 1lv7_A FTSH; alpha/beta domain 99.8 1.2E-17 4E-22 177.6 18.9 206 22-256 3-234 (257)
51 2chg_A Replication factor C sm 99.8 1.5E-17 5.3E-22 172.2 19.3 198 19-252 5-209 (226)
52 2chq_A Replication factor C sm 99.8 6.5E-18 2.2E-22 185.6 16.2 201 19-251 5-208 (319)
53 1sxj_D Activator 1 41 kDa subu 99.7 1.1E-17 3.6E-22 186.8 17.2 203 17-254 23-242 (353)
54 1fjm_A Protein serine/threonin 99.7 3.7E-18 1.3E-22 183.8 11.9 149 622-792 28-181 (330)
55 4akg_A Glutathione S-transfera 99.7 1E-16 3.5E-21 212.7 25.4 390 52-560 1267-1698(2695)
56 4b4t_I 26S protease regulatory 99.7 1.1E-17 3.8E-22 183.9 12.8 188 426-678 181-395 (437)
57 1sxj_B Activator 1 37 kDa subu 99.7 3.8E-17 1.3E-21 179.8 17.1 197 19-251 9-213 (323)
58 1sxj_E Activator 1 40 kDa subu 99.7 2.3E-17 7.9E-22 184.1 14.7 205 20-253 3-243 (354)
59 1jr3_A DNA polymerase III subu 99.7 1.4E-16 4.9E-21 179.0 20.9 202 19-252 4-226 (373)
60 4b4t_H 26S protease regulatory 99.7 2.7E-17 9.3E-22 182.7 14.4 189 426-678 208-422 (467)
61 4b4t_M 26S protease regulatory 99.7 1.8E-17 6.2E-22 185.2 12.7 188 426-678 180-394 (434)
62 1sxj_C Activator 1 40 kDa subu 99.7 5.1E-17 1.7E-21 180.0 16.1 197 18-250 12-215 (340)
63 2r62_A Cell division protease 99.7 1.2E-18 4.2E-23 186.4 2.9 202 24-253 4-232 (268)
64 1njg_A DNA polymerase III subu 99.7 1.5E-16 5E-21 167.2 18.2 202 19-251 11-232 (250)
65 1sxj_A Activator 1 95 kDa subu 99.7 1.4E-17 4.7E-22 194.6 10.7 201 18-251 26-256 (516)
66 4b4t_L 26S protease subunit RP 99.7 4.5E-17 1.5E-21 182.2 14.0 189 426-678 180-394 (437)
67 1hqc_A RUVB; extended AAA-ATPa 99.7 5.7E-17 2E-21 178.6 14.6 188 22-252 3-216 (324)
68 3uk6_A RUVB-like 2; hexameric 99.7 2.4E-16 8.2E-21 176.9 19.7 207 19-256 31-312 (368)
69 1ofh_A ATP-dependent HSL prote 99.7 2.1E-16 7.2E-21 172.8 18.4 206 32-253 16-272 (310)
70 4b4t_K 26S protease regulatory 99.7 7.1E-17 2.4E-21 180.4 13.7 188 426-678 171-386 (428)
71 3pfi_A Holliday junction ATP-d 99.7 6.2E-16 2.1E-20 171.3 20.7 190 427-678 29-226 (338)
72 2x8a_A Nuclear valosin-contain 99.7 3.5E-16 1.2E-20 166.9 17.5 204 26-253 5-232 (274)
73 3eie_A Vacuolar protein sortin 99.7 3E-16 1E-20 172.2 17.0 194 427-678 18-227 (322)
74 2ie4_C PP2A-alpha;, serine/thr 99.7 1.2E-16 4E-21 171.2 12.6 151 622-793 21-176 (309)
75 3n70_A Transport activator; si 99.7 1.2E-16 4E-21 153.6 11.4 143 428-625 2-145 (145)
76 2r44_A Uncharacterized protein 99.7 3.7E-16 1.3E-20 172.5 16.5 211 17-258 13-281 (331)
77 3t15_A Ribulose bisphosphate c 99.7 3.1E-16 1.1E-20 169.3 15.5 157 50-234 34-216 (293)
78 3te6_A Regulatory protein SIR3 99.7 2.4E-16 8.4E-21 169.5 13.8 221 19-255 10-287 (318)
79 2dhr_A FTSH; AAA+ protein, hex 99.7 2.5E-16 8.6E-21 180.2 14.6 200 26-254 26-251 (499)
80 1xwi_A SKD1 protein; VPS4B, AA 99.7 1.4E-15 4.8E-20 166.4 19.9 195 427-678 12-222 (322)
81 1in4_A RUVB, holliday junction 99.7 5E-15 1.7E-19 163.2 23.6 191 20-254 14-230 (334)
82 2qp9_X Vacuolar protein sortin 99.7 8E-16 2.7E-20 170.8 16.7 194 427-678 51-260 (355)
83 1ixz_A ATP-dependent metallopr 99.6 2.7E-15 9.2E-20 158.9 18.2 202 25-255 10-237 (254)
84 3u61_B DNA polymerase accessor 99.6 3.3E-15 1.1E-19 164.4 18.2 189 427-686 26-220 (324)
85 2zan_A Vacuolar protein sortin 99.6 4.3E-15 1.5E-19 169.8 19.7 195 427-678 134-344 (444)
86 3pvs_A Replication-associated 99.6 1.2E-15 4.2E-20 173.5 15.1 192 427-687 26-220 (447)
87 1iy2_A ATP-dependent metallopr 99.6 6.3E-15 2.2E-19 158.2 17.9 201 26-255 35-261 (278)
88 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 6.2E-15 2.1E-19 168.9 17.4 207 416-665 11-238 (500)
89 2r44_A Uncharacterized protein 99.6 5.9E-15 2E-19 162.9 16.5 206 417-664 17-238 (331)
90 1hqc_A RUVB; extended AAA-ATPa 99.6 7.6E-15 2.6E-19 161.5 16.8 179 427-664 12-199 (324)
91 3vfd_A Spastin; ATPase, microt 99.6 6.4E-15 2.2E-19 166.1 16.5 183 427-664 115-313 (389)
92 3e7a_A PP-1A, serine/threonine 99.6 6.6E-15 2.3E-19 155.6 15.0 147 623-791 28-179 (299)
93 3d8b_A Fidgetin-like protein 1 99.6 1.2E-14 3.9E-19 161.8 17.1 195 427-678 84-294 (357)
94 3m6a_A ATP-dependent protease 99.6 4.3E-15 1.5E-19 173.8 14.2 179 32-231 82-296 (543)
95 3cf0_A Transitional endoplasmi 99.6 1E-14 3.5E-19 158.3 16.1 161 427-637 15-199 (301)
96 3co5_A Putative two-component 99.6 1.1E-15 3.6E-20 146.5 6.6 138 428-625 5-143 (143)
97 1aui_A Calcineurin, serine/thr 99.6 3.5E-15 1.2E-19 166.3 11.6 149 623-793 55-208 (521)
98 3t15_A Ribulose bisphosphate c 99.6 5.1E-15 1.8E-19 159.8 12.5 162 433-637 13-198 (293)
99 3vkg_A Dynein heavy chain, cyt 99.6 2.7E-14 9.2E-19 190.2 21.9 389 52-560 1304-1735(3245)
100 4akg_A Glutathione S-transfera 99.6 4.3E-13 1.5E-17 178.5 33.1 134 40-204 635-790 (2695)
101 2v1u_A Cell division control p 99.6 1.2E-14 4.1E-19 164.0 16.0 221 21-255 12-257 (387)
102 4fcw_A Chaperone protein CLPB; 99.6 2.7E-14 9.2E-19 156.1 18.2 200 32-252 18-276 (311)
103 3b9p_A CG5977-PA, isoform A; A 99.6 2.3E-14 8E-19 155.5 17.3 196 427-678 21-232 (297)
104 1ypw_A Transitional endoplasmi 99.6 1.6E-16 5.3E-21 194.3 -0.5 199 28-254 474-698 (806)
105 1l8q_A Chromosomal replication 99.6 5E-14 1.7E-18 154.9 18.9 199 28-253 8-214 (324)
106 2qby_B CDC6 homolog 3, cell di 99.6 6.3E-14 2.2E-18 158.0 19.8 224 14-255 6-253 (384)
107 3bos_A Putative DNA replicatio 99.6 2.6E-14 9E-19 149.8 15.5 199 20-255 16-225 (242)
108 2qz4_A Paraplegin; AAA+, SPG7, 99.6 5E-14 1.7E-18 149.8 17.8 165 427-639 6-192 (262)
109 1d2n_A N-ethylmaleimide-sensit 99.6 2.6E-14 9.1E-19 152.9 15.3 178 30-233 32-229 (272)
110 3hws_A ATP-dependent CLP prote 99.6 4E-14 1.4E-18 158.1 17.4 208 33-254 17-322 (363)
111 3icf_A PPT, serine/threonine-p 99.6 9.4E-15 3.2E-19 156.7 11.5 154 623-791 30-189 (335)
112 1g8p_A Magnesium-chelatase 38 99.6 3E-14 1E-18 158.5 16.0 215 26-258 19-306 (350)
113 1g8p_A Magnesium-chelatase 38 99.6 3.7E-14 1.3E-18 157.8 16.5 206 427-668 24-283 (350)
114 1um8_A ATP-dependent CLP prote 99.5 6.4E-14 2.2E-18 157.3 18.5 208 32-253 22-338 (376)
115 3ll8_A Serine/threonine-protei 99.5 1.4E-14 4.7E-19 155.8 11.7 148 623-792 42-194 (357)
116 2bjv_A PSP operon transcriptio 99.5 3E-14 1E-18 151.9 14.2 183 28-229 3-220 (265)
117 1lv7_A FTSH; alpha/beta domain 99.5 6.1E-14 2.1E-18 148.7 16.3 196 427-686 12-229 (257)
118 2ce7_A Cell division protein F 99.5 5.1E-14 1.7E-18 160.2 16.1 163 427-637 16-199 (476)
119 3uk6_A RUVB-like 2; hexameric 99.5 3.5E-14 1.2E-18 159.2 14.5 201 426-665 43-291 (368)
120 3k1j_A LON protease, ATP-depen 99.5 3.1E-14 1.1E-18 169.4 14.8 208 427-668 41-330 (604)
121 3h63_A Serine/threonine-protei 99.5 2.6E-14 8.7E-19 152.3 12.3 117 669-790 62-184 (315)
122 1fnn_A CDC6P, cell division co 99.5 1E-13 3.5E-18 156.6 18.1 215 20-255 9-255 (389)
123 1iqp_A RFCS; clamp loader, ext 99.5 1.5E-13 5.3E-18 151.1 18.7 169 427-664 25-200 (327)
124 2chg_A Replication factor C sm 99.5 1.8E-13 6.1E-18 141.3 17.8 168 427-663 17-191 (226)
125 2qby_A CDC6 homolog 1, cell di 99.5 2E-13 6.9E-18 153.8 19.6 218 20-255 12-253 (386)
126 1ojl_A Transcriptional regulat 99.5 3.4E-14 1.2E-18 154.0 12.6 196 31-252 2-233 (304)
127 2z4s_A Chromosomal replication 99.5 1.2E-13 4.2E-18 157.5 16.8 206 29-256 103-315 (440)
128 2chq_A Replication factor C sm 99.5 1.1E-13 3.9E-18 151.6 15.8 167 427-663 17-191 (319)
129 3h4m_A Proteasome-activating n 99.5 1.2E-13 4.2E-18 148.8 15.6 166 427-637 17-201 (285)
130 3hu3_A Transitional endoplasmi 99.5 6.6E-14 2.3E-18 160.8 13.6 163 427-637 204-385 (489)
131 1a5t_A Delta prime, HOLB; zinc 99.5 2E-13 6.7E-18 150.4 16.7 182 36-250 7-208 (334)
132 1sxj_D Activator 1 41 kDa subu 99.5 7.4E-14 2.5E-18 155.6 13.1 184 427-665 37-224 (353)
133 1g41_A Heat shock protein HSLU 99.5 2E-13 7E-18 152.7 16.5 99 127-231 253-382 (444)
134 1wao_1 Serine/threonine protei 99.5 1.4E-13 4.7E-18 159.6 14.8 117 669-790 215-337 (477)
135 3te6_A Regulatory protein SIR3 99.5 1.2E-13 4.1E-18 148.5 12.4 221 429-689 22-286 (318)
136 3pxi_A Negative regulator of g 99.5 2.2E-13 7.6E-18 166.9 16.1 179 31-231 491-704 (758)
137 1r6b_X CLPA protein; AAA+, N-t 99.5 5.5E-13 1.9E-17 163.7 18.5 179 31-230 458-694 (758)
138 1d2n_A N-ethylmaleimide-sensit 99.5 3.6E-14 1.2E-18 151.9 6.9 190 425-675 31-238 (272)
139 1sxj_B Activator 1 37 kDa subu 99.5 4.7E-13 1.6E-17 147.0 15.8 168 427-664 21-197 (323)
140 1sxj_C Activator 1 40 kDa subu 99.5 7.4E-13 2.5E-17 146.5 17.2 170 427-665 25-201 (340)
141 1a5t_A Delta prime, HOLB; zinc 99.4 1.3E-12 4.4E-17 143.9 17.9 178 429-664 4-193 (334)
142 1jr3_A DNA polymerase III subu 99.4 2.3E-12 7.7E-17 144.6 20.2 184 427-664 16-209 (373)
143 1l8q_A Chromosomal replication 99.4 5.2E-13 1.8E-17 146.7 13.2 171 458-686 38-212 (324)
144 2r62_A Cell division protease 99.4 1.1E-13 3.9E-18 147.6 7.7 162 427-637 11-196 (268)
145 3f9v_A Minichromosome maintena 99.4 4E-14 1.4E-18 167.0 3.7 197 418-637 286-490 (595)
146 2gno_A DNA polymerase III, gam 99.4 1.7E-12 5.8E-17 140.1 15.9 147 35-207 1-152 (305)
147 2gno_A DNA polymerase III, gam 99.4 1.4E-12 4.6E-17 140.8 14.9 145 431-637 1-152 (305)
148 3vkg_A Dynein heavy chain, cyt 99.4 1.1E-10 3.7E-15 156.2 36.0 135 39-204 593-750 (3245)
149 1sxj_E Activator 1 40 kDa subu 99.4 1.6E-12 5.5E-17 144.7 16.1 197 427-686 14-241 (354)
150 1njg_A DNA polymerase III subu 99.4 1E-11 3.6E-16 129.9 20.6 182 427-664 23-216 (250)
151 3n70_A Transport activator; si 99.4 5.5E-13 1.9E-17 127.9 9.3 135 31-193 1-143 (145)
152 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 3E-12 1E-16 146.7 17.0 212 32-266 23-280 (500)
153 2dhr_A FTSH; AAA+ protein, hex 99.4 6.5E-13 2.2E-17 152.0 10.7 188 427-678 31-243 (499)
154 2qby_B CDC6 homolog 3, cell di 99.4 2.5E-12 8.5E-17 144.9 15.4 211 427-686 20-249 (384)
155 1fnn_A CDC6P, cell division co 99.4 5.8E-12 2E-16 142.1 18.4 202 427-666 17-228 (389)
156 1sxj_A Activator 1 95 kDa subu 99.4 3.4E-12 1.2E-16 149.0 16.0 202 427-685 39-255 (516)
157 3bos_A Putative DNA replicatio 99.4 3.3E-12 1.1E-16 133.7 13.5 165 433-664 37-205 (242)
158 1qvr_A CLPB protein; coiled co 99.4 2.8E-12 9.5E-17 158.9 15.0 183 31-231 558-799 (854)
159 2z4s_A Chromosomal replication 99.3 1.2E-12 4.1E-17 149.2 9.7 175 458-687 131-311 (440)
160 2v1u_A Cell division control p 99.3 2.5E-12 8.5E-17 144.9 11.7 200 427-666 19-236 (387)
161 3k1j_A LON protease, ATP-depen 99.3 1.2E-11 4E-16 147.2 16.7 221 22-256 32-357 (604)
162 3co5_A Putative two-component 99.3 2.9E-13 9.9E-18 129.4 2.2 130 32-194 5-140 (143)
163 1ixz_A ATP-dependent metallopr 99.3 8.4E-12 2.9E-16 131.9 13.7 187 427-678 16-228 (254)
164 2x8a_A Nuclear valosin-contain 99.3 1.7E-11 5.8E-16 130.6 16.0 131 459-637 46-191 (274)
165 3pxg_A Negative regulator of g 99.3 1.1E-11 3.9E-16 142.5 15.5 173 427-665 180-361 (468)
166 1in4_A RUVB, holliday junction 99.3 6.9E-11 2.4E-15 130.0 19.6 179 427-664 25-211 (334)
167 1nnw_A Hypothetical protein; s 99.3 2.1E-12 7.2E-17 136.4 6.9 118 670-787 5-141 (252)
168 1iy2_A ATP-dependent metallopr 99.3 2.2E-11 7.4E-16 130.5 14.3 187 427-678 40-252 (278)
169 1jbk_A CLPB protein; beta barr 99.3 3.9E-12 1.3E-16 127.9 7.9 156 426-633 21-194 (195)
170 3f8t_A Predicted ATPase involv 99.2 4.7E-11 1.6E-15 132.0 14.7 215 418-664 205-426 (506)
171 1w5s_A Origin recognition comp 99.2 2.1E-10 7.2E-15 130.3 17.0 217 31-254 22-273 (412)
172 2qby_A CDC6 homolog 1, cell di 99.2 8.8E-11 3E-15 132.1 13.7 196 427-665 20-231 (386)
173 2p65_A Hypothetical protein PF 99.2 3.2E-11 1.1E-15 120.5 8.5 148 426-625 21-187 (187)
174 3rqz_A Metallophosphoesterase; 99.1 2.7E-11 9.3E-16 127.1 6.1 116 670-789 7-122 (246)
175 3qfm_A SAPH, putative uncharac 99.1 2.8E-10 9.5E-15 120.8 12.5 115 670-786 15-138 (270)
176 3f9v_A Minichromosome maintena 99.1 4.2E-11 1.4E-15 141.2 6.6 160 31-209 295-492 (595)
177 1ny5_A Transcriptional regulat 99.0 2.3E-09 7.9E-14 120.0 13.9 180 30-229 136-350 (387)
178 3dzd_A Transcriptional regulat 99.0 5E-09 1.7E-13 116.3 16.1 178 31-229 129-341 (368)
179 2c9o_A RUVB-like 1; hexameric 99.0 7.2E-10 2.5E-14 127.2 8.5 99 426-543 36-140 (456)
180 2qen_A Walker-type ATPase; unk 99.0 1.1E-08 3.6E-13 113.3 17.7 185 30-234 11-239 (350)
181 3f8t_A Predicted ATPase involv 98.9 8.1E-09 2.8E-13 114.3 15.1 232 7-267 192-478 (506)
182 3ec2_A DNA replication protein 98.9 4.4E-09 1.5E-13 104.6 9.5 105 459-584 40-147 (180)
183 2fna_A Conserved hypothetical 98.8 2.7E-08 9.3E-13 110.3 15.8 181 30-234 12-243 (357)
184 1w5s_A Origin recognition comp 98.8 1.8E-08 6.1E-13 114.3 12.9 200 427-665 22-249 (412)
185 2w58_A DNAI, primosome compone 98.8 1.2E-08 4.3E-13 103.3 9.0 103 20-136 14-127 (202)
186 3cmu_A Protein RECA, recombina 98.8 3.1E-08 1.1E-12 127.9 14.7 83 459-542 1429-1518(2050)
187 2w58_A DNAI, primosome compone 98.8 6.6E-09 2.3E-13 105.3 6.3 108 458-586 55-165 (202)
188 2kjq_A DNAA-related protein; s 98.7 1.6E-08 5.6E-13 96.7 6.9 92 459-584 38-129 (149)
189 3ec2_A DNA replication protein 98.7 1.1E-08 3.9E-13 101.5 4.7 131 23-171 2-144 (180)
190 1su1_A Hypothetical protein YF 98.7 6.7E-08 2.3E-12 98.2 10.3 70 669-739 28-105 (208)
191 1jr3_D DNA polymerase III, del 98.6 1.1E-07 3.9E-12 104.8 12.2 175 44-253 10-191 (343)
192 1jr3_D DNA polymerase III, del 98.6 3.4E-07 1.2E-11 100.9 14.6 164 458-686 19-189 (343)
193 2qgz_A Helicase loader, putati 98.5 6.4E-08 2.2E-12 104.6 6.7 109 458-587 153-265 (308)
194 2qgz_A Helicase loader, putati 98.5 6.9E-08 2.4E-12 104.4 5.7 104 21-136 114-226 (308)
195 2kjq_A DNAA-related protein; s 98.5 1.8E-07 6.1E-12 89.4 6.7 107 51-188 35-141 (149)
196 1tue_A Replication protein E1; 98.4 2.2E-07 7.5E-12 91.7 6.8 121 38-194 43-179 (212)
197 2kkn_A Uncharacterized protein 98.4 2.6E-07 8.9E-12 91.1 7.5 140 669-931 25-170 (178)
198 1s3l_A Hypothetical protein MJ 98.4 9.4E-07 3.2E-11 88.2 9.6 62 670-737 29-90 (190)
199 2r2a_A Uncharacterized protein 98.4 7.3E-07 2.5E-11 89.3 8.8 131 54-196 7-155 (199)
200 1u0j_A DNA replication protein 98.3 1.5E-06 5.3E-11 90.0 10.1 133 458-634 105-248 (267)
201 2qen_A Walker-type ATPase; unk 98.3 7.2E-06 2.5E-10 90.3 16.3 183 427-663 12-233 (350)
202 1u0j_A DNA replication protein 98.3 2.7E-06 9.4E-11 88.2 11.4 127 43-206 93-250 (267)
203 1tue_A Replication protein E1; 98.2 7.3E-06 2.5E-10 80.9 11.9 116 459-623 60-178 (212)
204 1uf3_A Hypothetical protein TT 98.2 4E-06 1.4E-10 86.2 10.1 67 670-737 9-78 (228)
205 2fna_A Conserved hypothetical 98.2 1.3E-05 4.3E-10 88.6 14.6 167 427-637 13-222 (357)
206 2a22_A Vacuolar protein sortin 98.1 2E-06 6.7E-11 87.8 5.3 89 670-787 29-123 (215)
207 1ye8_A Protein THEP1, hypothet 98.1 8.4E-06 2.9E-10 80.2 9.1 23 54-76 2-24 (178)
208 3upu_A ATP-dependent DNA helic 98.1 7.9E-06 2.7E-10 93.6 10.1 61 18-79 11-72 (459)
209 1z6t_A APAF-1, apoptotic prote 98.0 7.8E-05 2.7E-09 88.5 17.0 174 27-233 120-320 (591)
210 3ck2_A Conserved uncharacteriz 98.0 1.3E-05 4.4E-10 78.9 8.5 55 670-735 10-64 (176)
211 2yvt_A Hypothetical protein AQ 98.0 4.3E-06 1.5E-10 88.1 4.9 68 670-738 9-105 (260)
212 2vhj_A Ntpase P4, P4; non- hyd 98.0 5.7E-06 1.9E-10 87.8 5.5 105 53-170 124-236 (331)
213 1z2w_A Vacuolar protein sortin 97.9 1.7E-05 5.9E-10 79.2 8.2 62 670-736 14-77 (192)
214 2r2a_A Uncharacterized protein 97.9 2.4E-05 8.2E-10 78.2 8.8 130 459-624 7-153 (199)
215 2orw_A Thymidine kinase; TMTK, 97.7 4.7E-05 1.6E-09 75.3 7.5 96 459-555 5-102 (184)
216 1ye8_A Protein THEP1, hypothet 97.7 0.00014 4.9E-09 71.4 10.2 23 459-481 2-24 (178)
217 2r8r_A Sensor protein; KDPD, P 97.7 0.00028 9.4E-09 71.1 11.9 153 457-632 6-172 (228)
218 2vhj_A Ntpase P4, P4; non- hyd 97.6 0.00013 4.4E-09 77.5 8.5 70 459-543 125-196 (331)
219 3sfz_A APAF-1, apoptotic pepti 97.5 0.0006 2E-08 88.4 16.3 156 26-207 119-299 (1249)
220 1xm7_A Hypothetical protein AQ 97.5 0.00029 9.9E-09 70.4 10.2 45 693-737 42-86 (195)
221 3cmw_A Protein RECA, recombina 97.5 9.9E-05 3.4E-09 94.9 8.3 78 54-139 1084-1175(1706)
222 2b8t_A Thymidine kinase; deoxy 97.5 0.00027 9.3E-09 71.7 9.6 97 458-554 13-114 (223)
223 2orw_A Thymidine kinase; TMTK, 97.4 0.00011 3.9E-09 72.5 4.5 24 54-77 5-28 (184)
224 3cmw_A Protein RECA, recombina 97.3 0.00017 5.8E-09 92.7 7.0 84 459-543 1084-1174(1706)
225 2a5y_B CED-4; apoptosis; HET: 97.3 0.00096 3.3E-08 78.1 12.9 150 34-206 131-305 (549)
226 3upu_A ATP-dependent DNA helic 97.3 0.00053 1.8E-08 78.4 9.5 112 431-554 29-153 (459)
227 1vt4_I APAF-1 related killer D 97.3 0.0013 4.6E-08 79.9 13.0 42 33-74 130-172 (1221)
228 3jvv_A Twitching mobility prot 97.0 0.00095 3.2E-08 73.0 7.8 96 458-556 124-221 (356)
229 2iut_A DNA translocase FTSK; n 97.0 0.0033 1.1E-07 72.1 12.3 72 126-204 345-420 (574)
230 1xx6_A Thymidine kinase; NESG, 97.0 0.0011 3.8E-08 65.5 6.9 95 459-554 10-106 (191)
231 3dm5_A SRP54, signal recogniti 96.9 0.0097 3.3E-07 66.4 14.7 116 457-582 100-227 (443)
232 2r8r_A Sensor protein; KDPD, P 96.9 0.017 5.7E-07 58.1 14.9 29 51-79 5-33 (228)
233 2a5y_B CED-4; apoptosis; HET: 96.8 0.012 4.2E-07 68.7 15.7 44 430-479 131-174 (549)
234 2b8t_A Thymidine kinase; deoxy 96.8 0.0019 6.4E-08 65.5 7.3 103 53-171 13-127 (223)
235 1g5t_A COB(I)alamin adenosyltr 96.8 0.0022 7.6E-08 63.0 7.5 114 458-586 29-169 (196)
236 2w0m_A SSO2452; RECA, SSPF, un 96.8 0.00069 2.4E-08 69.4 4.1 25 53-77 24-48 (235)
237 3kl4_A SRP54, signal recogniti 96.7 0.0062 2.1E-07 68.0 11.6 115 457-582 97-226 (433)
238 2cvh_A DNA repair and recombin 96.7 0.0017 5.9E-08 65.8 6.4 22 53-74 21-42 (220)
239 2j9r_A Thymidine kinase; TK1, 96.7 0.0031 1.1E-07 62.9 8.0 95 459-554 30-126 (214)
240 1qhx_A CPT, protein (chloramph 96.7 0.0012 4E-08 64.7 4.9 35 53-97 4-38 (178)
241 3trf_A Shikimate kinase, SK; a 96.6 0.00085 2.9E-08 66.1 3.4 25 52-76 5-29 (185)
242 2w0m_A SSO2452; RECA, SSPF, un 96.6 0.0046 1.6E-07 63.1 8.9 36 459-494 25-60 (235)
243 3e1s_A Exodeoxyribonuclease V, 96.6 0.0025 8.7E-08 74.4 7.7 90 459-555 206-305 (574)
244 1xp8_A RECA protein, recombina 96.6 0.0046 1.6E-07 67.7 9.0 127 4-138 15-166 (366)
245 1qhx_A CPT, protein (chloramph 96.6 0.0012 4E-08 64.6 3.8 35 459-496 5-39 (178)
246 3cmu_A Protein RECA, recombina 96.6 0.0032 1.1E-07 82.1 8.7 84 459-543 1083-1173(2050)
247 2i3b_A HCR-ntpase, human cance 96.5 0.0056 1.9E-07 60.4 8.5 24 459-482 3-26 (189)
248 2i3b_A HCR-ntpase, human cance 96.5 0.0021 7.2E-08 63.5 5.2 24 54-77 3-26 (189)
249 3trf_A Shikimate kinase, SK; a 96.5 0.0016 5.5E-08 64.1 4.3 29 459-490 7-35 (185)
250 3vaa_A Shikimate kinase, SK; s 96.5 0.0014 4.7E-08 65.6 3.6 26 51-76 24-49 (199)
251 2zr9_A Protein RECA, recombina 96.5 0.0061 2.1E-07 66.5 9.0 83 459-542 63-152 (349)
252 3hr8_A Protein RECA; alpha and 96.4 0.0084 2.9E-07 65.2 9.9 84 459-543 63-153 (356)
253 1gvn_B Zeta; postsegregational 96.4 0.0043 1.5E-07 65.9 7.3 36 458-496 34-69 (287)
254 3iij_A Coilin-interacting nucl 96.4 0.0019 6.4E-08 63.3 4.2 26 51-76 10-35 (180)
255 1z6t_A APAF-1, apoptotic prote 96.4 0.021 7.3E-07 67.3 14.0 46 427-479 124-169 (591)
256 1via_A Shikimate kinase; struc 96.4 0.0019 6.5E-08 63.0 3.8 24 53-76 5-28 (175)
257 3vaa_A Shikimate kinase, SK; s 96.3 0.0025 8.5E-08 63.7 4.4 28 459-489 27-54 (199)
258 2fz4_A DNA repair protein RAD2 96.3 0.015 5.1E-07 59.7 10.4 24 53-76 109-132 (237)
259 1zuh_A Shikimate kinase; alpha 96.3 0.0019 6.4E-08 62.6 3.3 26 51-76 6-31 (168)
260 3kb2_A SPBC2 prophage-derived 96.3 0.0023 7.7E-08 62.1 3.9 24 53-76 2-25 (173)
261 3kb2_A SPBC2 prophage-derived 96.3 0.003 1E-07 61.1 4.7 29 459-490 3-31 (173)
262 3jvv_A Twitching mobility prot 96.3 0.0074 2.5E-07 65.9 8.3 45 29-78 105-149 (356)
263 2p5t_B PEZT; postsegregational 96.3 0.0056 1.9E-07 63.7 7.0 37 458-497 33-69 (253)
264 3hr8_A Protein RECA; alpha and 96.3 0.013 4.6E-07 63.6 10.2 125 6-138 3-153 (356)
265 2pt7_A CAG-ALFA; ATPase, prote 96.3 0.0091 3.1E-07 64.6 8.9 87 459-555 173-263 (330)
266 1u94_A RECA protein, recombina 96.3 0.004 1.4E-07 68.0 6.1 121 8-138 8-155 (356)
267 2cdn_A Adenylate kinase; phosp 96.3 0.0032 1.1E-07 62.9 4.9 29 459-490 22-50 (201)
268 2eyu_A Twitching motility prot 96.2 0.0081 2.8E-07 62.7 8.1 25 458-482 26-50 (261)
269 3ib7_A ICC protein; metallopho 96.2 0.013 4.4E-07 63.4 10.1 65 670-734 29-112 (330)
270 2iyv_A Shikimate kinase, SK; t 96.2 0.0024 8.1E-08 62.8 3.8 24 53-76 3-26 (184)
271 4a74_A DNA repair and recombin 96.2 0.0047 1.6E-07 63.0 6.1 24 53-76 26-49 (231)
272 2ius_A DNA translocase FTSK; n 96.2 0.016 5.4E-07 66.0 10.8 72 126-204 299-374 (512)
273 1y63_A LMAJ004144AAA protein; 96.2 0.0019 6.6E-08 63.6 2.9 25 51-75 9-33 (184)
274 1zuh_A Shikimate kinase; alpha 96.2 0.003 1E-07 61.0 4.2 30 458-490 8-37 (168)
275 1via_A Shikimate kinase; struc 96.2 0.0026 9E-08 62.0 3.6 23 459-481 6-28 (175)
276 1knq_A Gluconate kinase; ALFA/ 96.2 0.0046 1.6E-07 60.2 5.4 35 458-497 9-43 (175)
277 1n0w_A DNA repair protein RAD5 96.1 0.0097 3.3E-07 61.2 8.1 24 53-76 25-48 (243)
278 2dr3_A UPF0273 protein PH0284; 96.1 0.013 4.5E-07 60.3 9.1 37 459-495 25-61 (247)
279 1xp8_A RECA protein, recombina 96.1 0.014 4.7E-07 63.9 9.4 83 459-542 76-165 (366)
280 2dr3_A UPF0273 protein PH0284; 96.1 0.013 4.4E-07 60.3 8.8 26 52-77 23-48 (247)
281 1kag_A SKI, shikimate kinase I 96.1 0.004 1.4E-07 60.4 4.6 24 53-76 5-28 (173)
282 2ehv_A Hypothetical protein PH 96.1 0.0036 1.2E-07 64.8 4.4 35 459-493 32-67 (251)
283 2cvh_A DNA repair and recombin 96.1 0.0089 3E-07 60.4 7.3 34 459-495 22-55 (220)
284 3iij_A Coilin-interacting nucl 96.1 0.0041 1.4E-07 60.9 4.4 23 459-481 13-35 (180)
285 1nks_A Adenylate kinase; therm 96.1 0.0035 1.2E-07 62.0 4.0 37 459-495 3-39 (194)
286 2px0_A Flagellar biosynthesis 96.1 0.085 2.9E-06 56.0 15.0 95 458-554 106-209 (296)
287 2iyv_A Shikimate kinase, SK; t 96.0 0.0036 1.2E-07 61.5 3.9 28 459-489 4-31 (184)
288 2ze6_A Isopentenyl transferase 96.0 0.0037 1.3E-07 65.1 4.1 23 54-76 3-25 (253)
289 2zr9_A Protein RECA, recombina 96.0 0.013 4.5E-07 63.9 8.6 123 8-138 6-153 (349)
290 1u94_A RECA protein, recombina 96.0 0.015 5.1E-07 63.5 9.0 83 459-542 65-154 (356)
291 1cr0_A DNA primase/helicase; R 96.0 0.016 5.4E-07 61.7 9.1 26 52-77 35-60 (296)
292 1e6c_A Shikimate kinase; phosp 96.0 0.0039 1.3E-07 60.4 4.0 24 53-76 3-26 (173)
293 1aky_A Adenylate kinase; ATP:A 96.0 0.0035 1.2E-07 63.7 3.7 26 51-76 3-28 (220)
294 3e1s_A Exodeoxyribonuclease V, 96.0 0.022 7.7E-07 66.4 10.9 27 52-78 204-230 (574)
295 2ze6_A Isopentenyl transferase 96.0 0.0048 1.6E-07 64.2 4.7 32 459-493 3-34 (253)
296 2rhm_A Putative kinase; P-loop 96.0 0.0029 9.8E-08 62.7 2.9 25 52-76 5-29 (193)
297 1y63_A LMAJ004144AAA protein; 96.0 0.0043 1.5E-07 61.0 4.2 36 459-498 12-47 (184)
298 3crm_A TRNA delta(2)-isopenten 96.0 0.0096 3.3E-07 63.6 7.0 33 53-95 6-38 (323)
299 1kht_A Adenylate kinase; phosp 95.9 0.0042 1.4E-07 61.3 4.0 37 459-495 5-41 (192)
300 2cdn_A Adenylate kinase; phosp 95.9 0.0039 1.3E-07 62.3 3.7 25 52-76 20-44 (201)
301 1kag_A SKI, shikimate kinase I 95.9 0.0039 1.3E-07 60.5 3.6 23 459-481 6-28 (173)
302 3t61_A Gluconokinase; PSI-biol 95.9 0.0047 1.6E-07 61.7 4.2 25 52-76 18-42 (202)
303 3dm5_A SRP54, signal recogniti 95.9 0.054 1.9E-06 60.4 13.1 76 53-136 101-194 (443)
304 2rhm_A Putative kinase; P-loop 95.9 0.005 1.7E-07 60.9 4.4 29 459-490 7-35 (193)
305 2c95_A Adenylate kinase 1; tra 95.9 0.0041 1.4E-07 61.6 3.5 26 51-76 8-33 (196)
306 2ga8_A Hypothetical 39.9 kDa p 95.8 0.0066 2.2E-07 65.4 5.2 42 35-76 3-48 (359)
307 3sr0_A Adenylate kinase; phosp 95.8 0.0057 2E-07 61.3 4.4 23 54-76 2-24 (206)
308 3tlx_A Adenylate kinase 2; str 95.8 0.0071 2.4E-07 62.5 5.1 26 51-76 28-53 (243)
309 1e6c_A Shikimate kinase; phosp 95.8 0.005 1.7E-07 59.7 3.8 23 459-481 4-26 (173)
310 1w4r_A Thymidine kinase; type 95.8 0.011 3.7E-07 58.0 5.9 90 459-554 22-115 (195)
311 3t61_A Gluconokinase; PSI-biol 95.8 0.0061 2.1E-07 60.9 4.3 23 459-481 20-42 (202)
312 4a74_A DNA repair and recombin 95.8 0.018 6.1E-07 58.6 8.0 37 459-495 27-69 (231)
313 1aky_A Adenylate kinase; ATP:A 95.8 0.0058 2E-07 62.0 4.2 23 459-481 6-28 (220)
314 2ehv_A Hypothetical protein PH 95.8 0.0045 1.5E-07 64.1 3.4 23 52-74 30-52 (251)
315 2pt5_A Shikimate kinase, SK; a 95.7 0.0063 2.1E-07 58.7 4.2 28 459-489 2-29 (168)
316 3lw7_A Adenylate kinase relate 95.7 0.0042 1.4E-07 60.2 2.9 23 53-76 2-24 (179)
317 2vli_A Antibiotic resistance p 95.7 0.0046 1.6E-07 60.5 3.3 28 459-489 7-34 (183)
318 1nks_A Adenylate kinase; therm 95.7 0.0085 2.9E-07 59.1 5.2 24 54-77 3-26 (194)
319 3umf_A Adenylate kinase; rossm 95.7 0.0057 2E-07 61.7 3.8 23 54-76 31-53 (217)
320 2ewv_A Twitching motility prot 95.7 0.015 5.1E-07 64.1 7.5 86 458-554 137-232 (372)
321 3uie_A Adenylyl-sulfate kinase 95.7 0.0093 3.2E-07 59.5 5.3 36 459-494 27-62 (200)
322 1ak2_A Adenylate kinase isoenz 95.7 0.0058 2E-07 62.7 3.9 25 52-76 16-40 (233)
323 1tev_A UMP-CMP kinase; ploop, 95.7 0.0048 1.6E-07 61.0 3.1 24 53-76 4-27 (196)
324 1zp6_A Hypothetical protein AT 95.7 0.0061 2.1E-07 60.2 3.8 35 459-496 11-45 (191)
325 2c95_A Adenylate kinase 1; tra 95.7 0.0066 2.3E-07 60.1 4.1 23 459-481 11-33 (196)
326 4eun_A Thermoresistant glucoki 95.6 0.0081 2.8E-07 59.9 4.7 27 50-76 27-53 (200)
327 3lw7_A Adenylate kinase relate 95.6 0.006 2.1E-07 59.0 3.6 22 459-481 3-24 (179)
328 2fz4_A DNA repair protein RAD2 95.6 0.026 8.9E-07 57.9 8.6 91 459-553 110-216 (237)
329 3cm0_A Adenylate kinase; ATP-b 95.6 0.0073 2.5E-07 59.3 4.2 24 53-76 5-28 (186)
330 3cm0_A Adenylate kinase; ATP-b 95.6 0.0057 1.9E-07 60.1 3.4 23 459-481 6-28 (186)
331 2yvu_A Probable adenylyl-sulfa 95.6 0.012 4E-07 57.9 5.6 36 458-493 14-49 (186)
332 1w4r_A Thymidine kinase; type 95.6 0.0091 3.1E-07 58.5 4.7 25 54-78 22-47 (195)
333 3exa_A TRNA delta(2)-isopenten 95.6 0.014 4.8E-07 61.7 6.5 24 53-76 4-27 (322)
334 1kht_A Adenylate kinase; phosp 95.6 0.0068 2.3E-07 59.7 3.9 25 53-77 4-28 (192)
335 1w36_D RECD, exodeoxyribonucle 95.6 0.022 7.6E-07 67.1 8.9 26 529-554 262-287 (608)
336 3be4_A Adenylate kinase; malar 95.6 0.0052 1.8E-07 62.3 3.1 25 52-76 5-29 (217)
337 3fb4_A Adenylate kinase; psych 95.6 0.0073 2.5E-07 61.0 4.2 23 459-481 2-24 (216)
338 3dl0_A Adenylate kinase; phosp 95.6 0.0046 1.6E-07 62.5 2.6 23 54-76 2-24 (216)
339 3a4m_A L-seryl-tRNA(SEC) kinas 95.6 0.019 6.6E-07 59.8 7.5 26 52-77 4-29 (260)
340 2pt5_A Shikimate kinase, SK; a 95.6 0.0061 2.1E-07 58.8 3.4 23 54-76 2-24 (168)
341 3foz_A TRNA delta(2)-isopenten 95.6 0.015 5.3E-07 61.3 6.6 33 53-95 11-43 (316)
342 2bwj_A Adenylate kinase 5; pho 95.6 0.0058 2E-07 60.7 3.3 24 53-76 13-36 (199)
343 3dl0_A Adenylate kinase; phosp 95.6 0.0068 2.3E-07 61.3 3.8 23 459-481 2-24 (216)
344 3fb4_A Adenylate kinase; psych 95.6 0.0059 2E-07 61.7 3.3 23 54-76 2-24 (216)
345 1zak_A Adenylate kinase; ATP:A 95.6 0.0073 2.5E-07 61.4 4.1 26 51-76 4-29 (222)
346 1gvn_B Zeta; postsegregational 95.6 0.0056 1.9E-07 65.0 3.3 24 53-76 34-57 (287)
347 1zd8_A GTP:AMP phosphotransfer 95.6 0.0052 1.8E-07 62.7 2.9 25 52-76 7-31 (227)
348 1ak2_A Adenylate kinase isoenz 95.6 0.0083 2.8E-07 61.5 4.5 23 459-481 18-40 (233)
349 1tev_A UMP-CMP kinase; ploop, 95.6 0.0074 2.5E-07 59.6 4.0 23 459-481 5-27 (196)
350 3tlx_A Adenylate kinase 2; str 95.5 0.018 6E-07 59.4 6.9 23 459-481 31-53 (243)
351 1knq_A Gluconate kinase; ALFA/ 95.5 0.0067 2.3E-07 59.0 3.5 24 53-76 9-32 (175)
352 1zu4_A FTSY; GTPase, signal re 95.5 0.087 3E-06 56.5 12.5 42 455-496 103-144 (320)
353 2pez_A Bifunctional 3'-phospho 95.5 0.012 4E-07 57.5 5.1 35 459-493 7-41 (179)
354 3a4m_A L-seryl-tRNA(SEC) kinas 95.5 0.0098 3.3E-07 62.1 4.8 36 459-494 6-41 (260)
355 1zp6_A Hypothetical protein AT 95.5 0.0053 1.8E-07 60.7 2.6 24 53-76 10-33 (191)
356 3uie_A Adenylyl-sulfate kinase 95.5 0.0069 2.3E-07 60.5 3.4 29 49-77 22-50 (200)
357 2iut_A DNA translocase FTSK; n 95.5 0.16 5.3E-06 58.4 14.9 72 530-633 344-419 (574)
358 1ukz_A Uridylate kinase; trans 95.5 0.0095 3.3E-07 59.5 4.4 23 459-481 17-39 (203)
359 2vli_A Antibiotic resistance p 95.5 0.0054 1.8E-07 60.1 2.5 25 52-76 5-29 (183)
360 1n0w_A DNA repair protein RAD5 95.5 0.02 7E-07 58.7 7.1 37 459-495 26-68 (243)
361 1g5t_A COB(I)alamin adenosyltr 95.4 0.077 2.6E-06 52.0 10.6 30 50-79 26-55 (196)
362 3umf_A Adenylate kinase; rossm 95.4 0.01 3.5E-07 59.8 4.4 34 459-497 31-64 (217)
363 3lda_A DNA repair protein RAD5 95.4 0.028 9.5E-07 62.3 8.4 23 53-75 179-201 (400)
364 1ukz_A Uridylate kinase; trans 95.4 0.0062 2.1E-07 60.9 2.9 24 53-76 16-39 (203)
365 2orv_A Thymidine kinase; TP4A 95.4 0.079 2.7E-06 53.3 10.8 92 459-555 21-114 (234)
366 2bwj_A Adenylate kinase 5; pho 95.4 0.0083 2.8E-07 59.6 3.7 33 459-496 14-46 (199)
367 2yvu_A Probable adenylyl-sulfa 95.4 0.011 3.6E-07 58.2 4.4 27 52-78 13-39 (186)
368 1rz3_A Hypothetical protein rb 95.4 0.028 9.5E-07 56.0 7.5 38 459-496 24-61 (201)
369 1qf9_A UMP/CMP kinase, protein 95.4 0.0075 2.6E-07 59.5 3.3 24 53-76 7-30 (194)
370 1qf9_A UMP/CMP kinase, protein 95.4 0.011 3.9E-07 58.2 4.6 23 459-481 8-30 (194)
371 3sr0_A Adenylate kinase; phosp 95.4 0.012 4E-07 59.0 4.6 33 459-496 2-34 (206)
372 1ly1_A Polynucleotide kinase; 95.4 0.0073 2.5E-07 58.9 3.1 21 54-74 4-24 (181)
373 3be4_A Adenylate kinase; malar 95.3 0.0089 3E-07 60.5 3.7 23 459-481 7-29 (217)
374 4eun_A Thermoresistant glucoki 95.3 0.012 4.1E-07 58.6 4.6 33 459-496 31-63 (200)
375 2pbr_A DTMP kinase, thymidylat 95.3 0.013 4.4E-07 57.9 4.7 34 459-492 2-35 (195)
376 3nwj_A ATSK2; P loop, shikimat 95.3 0.011 3.7E-07 61.2 4.2 23 459-481 50-72 (250)
377 2qor_A Guanylate kinase; phosp 95.3 0.0092 3.1E-07 59.7 3.6 25 52-76 12-36 (204)
378 2yhs_A FTSY, cell division pro 95.3 0.076 2.6E-06 59.8 11.2 38 457-494 293-330 (503)
379 1e4v_A Adenylate kinase; trans 95.3 0.01 3.5E-07 59.9 3.9 23 459-481 2-24 (214)
380 2p5t_B PEZT; postsegregational 95.3 0.0071 2.4E-07 62.9 2.8 24 53-76 33-56 (253)
381 1zd8_A GTP:AMP phosphotransfer 95.2 0.0088 3E-07 61.0 3.4 23 459-481 9-31 (227)
382 2xxa_A Signal recognition part 95.2 0.12 4.1E-06 57.8 12.8 96 456-551 99-207 (433)
383 1e4v_A Adenylate kinase; trans 95.2 0.0079 2.7E-07 60.7 2.9 23 54-76 2-24 (214)
384 1ly1_A Polynucleotide kinase; 95.2 0.0097 3.3E-07 58.0 3.4 21 459-479 4-24 (181)
385 1ex7_A Guanylate kinase; subst 95.2 0.01 3.6E-07 58.2 3.5 24 53-76 2-25 (186)
386 3crm_A TRNA delta(2)-isopenten 95.2 0.012 4.1E-07 62.9 4.2 31 459-492 7-37 (323)
387 1rz3_A Hypothetical protein rb 95.1 0.029 1E-06 55.9 6.8 43 36-78 3-48 (201)
388 1xx6_A Thymidine kinase; NESG, 95.1 0.015 5.2E-07 57.3 4.5 25 54-78 10-34 (191)
389 2pt7_A CAG-ALFA; ATPase, prote 95.1 0.031 1.1E-06 60.4 7.4 25 52-76 171-195 (330)
390 1svm_A Large T antigen; AAA+ f 95.1 0.024 8.2E-07 62.2 6.5 23 459-481 171-193 (377)
391 3kl4_A SRP54, signal recogniti 95.1 0.13 4.6E-06 57.2 12.6 27 53-79 98-124 (433)
392 2r6a_A DNAB helicase, replicat 95.1 0.024 8.3E-07 64.4 6.7 24 54-77 205-228 (454)
393 2plr_A DTMP kinase, probable t 95.1 0.016 5.5E-07 58.1 4.8 25 459-483 6-30 (213)
394 3nwj_A ATSK2; P loop, shikimat 95.1 0.016 5.4E-07 59.9 4.7 39 38-76 33-72 (250)
395 3a8t_A Adenylate isopentenyltr 95.1 0.0073 2.5E-07 64.7 2.1 24 53-76 41-64 (339)
396 1pzn_A RAD51, DNA repair and r 95.0 0.034 1.2E-06 60.6 7.5 24 53-76 132-155 (349)
397 2jaq_A Deoxyguanosine kinase; 95.0 0.014 4.9E-07 58.0 4.2 23 54-76 2-24 (205)
398 3bh0_A DNAB-like replicative h 95.0 0.078 2.7E-06 56.9 10.2 24 54-77 70-93 (315)
399 1zak_A Adenylate kinase; ATP:A 95.0 0.0083 2.8E-07 61.0 2.3 23 459-481 7-29 (222)
400 2xb4_A Adenylate kinase; ATP-b 95.0 0.013 4.3E-07 59.6 3.8 23 459-481 2-24 (223)
401 2ga8_A Hypothetical 39.9 kDa p 95.0 0.032 1.1E-06 60.1 6.9 24 458-481 25-48 (359)
402 3llm_A ATP-dependent RNA helic 95.0 0.15 5E-06 52.1 11.8 19 459-477 78-96 (235)
403 1v5w_A DMC1, meiotic recombina 95.0 0.033 1.1E-06 60.6 7.2 108 50-167 120-271 (343)
404 2xb4_A Adenylate kinase; ATP-b 95.0 0.016 5.6E-07 58.8 4.5 23 54-76 2-24 (223)
405 3io5_A Recombination and repai 95.0 0.031 1E-06 59.1 6.5 39 458-496 29-69 (333)
406 2z0h_A DTMP kinase, thymidylat 95.0 0.017 5.8E-07 57.2 4.5 32 460-491 3-34 (197)
407 3c8u_A Fructokinase; YP_612366 94.9 0.015 5.1E-07 58.4 3.9 39 39-77 7-47 (208)
408 2wwf_A Thymidilate kinase, put 94.9 0.023 8E-07 56.9 5.3 24 459-482 12-35 (212)
409 2plr_A DTMP kinase, probable t 94.9 0.013 4.5E-07 58.7 3.4 24 53-76 5-28 (213)
410 3foz_A TRNA delta(2)-isopenten 94.9 0.017 5.9E-07 60.9 4.3 32 459-493 12-43 (316)
411 3r20_A Cytidylate kinase; stru 94.9 0.019 6.5E-07 58.5 4.5 25 52-76 9-33 (233)
412 3io5_A Recombination and repai 94.9 0.055 1.9E-06 57.1 8.1 80 54-138 30-125 (333)
413 1cke_A CK, MSSA, protein (cyti 94.9 0.018 6.3E-07 58.4 4.5 24 53-76 6-29 (227)
414 1kgd_A CASK, peripheral plasma 94.8 0.014 4.9E-07 57.0 3.4 24 53-76 6-29 (180)
415 1cke_A CK, MSSA, protein (cyti 94.8 0.016 5.6E-07 58.8 4.0 23 459-481 7-29 (227)
416 2jaq_A Deoxyguanosine kinase; 94.8 0.019 6.4E-07 57.2 4.3 23 459-481 2-24 (205)
417 3r20_A Cytidylate kinase; stru 94.8 0.018 6.2E-07 58.6 4.2 33 459-496 11-43 (233)
418 2if2_A Dephospho-COA kinase; a 94.8 0.014 4.8E-07 58.2 3.4 22 459-481 3-24 (204)
419 2pbr_A DTMP kinase, thymidylat 94.8 0.023 7.8E-07 56.0 4.8 25 54-78 2-26 (195)
420 3a8t_A Adenylate isopentenyltr 94.7 0.015 5.2E-07 62.2 3.6 31 459-492 42-72 (339)
421 2bbw_A Adenylate kinase 4, AK4 94.7 0.016 5.3E-07 59.9 3.6 25 52-76 27-51 (246)
422 3c8u_A Fructokinase; YP_612366 94.7 0.035 1.2E-06 55.6 6.1 25 458-482 23-47 (208)
423 3eph_A TRNA isopentenyltransfe 94.7 0.037 1.3E-06 60.6 6.6 24 53-76 3-26 (409)
424 2pez_A Bifunctional 3'-phospho 94.7 0.023 7.8E-07 55.4 4.6 37 52-95 5-41 (179)
425 2grj_A Dephospho-COA kinase; T 94.7 0.019 6.6E-07 56.7 4.0 34 459-497 14-47 (192)
426 1kgd_A CASK, peripheral plasma 94.7 0.019 6.4E-07 56.2 3.9 23 459-481 7-29 (180)
427 1w36_D RECD, exodeoxyribonucle 94.7 0.079 2.7E-06 62.4 9.9 26 52-77 164-189 (608)
428 1nn5_A Similar to deoxythymidy 94.7 0.024 8.4E-07 56.9 4.8 30 459-488 11-40 (215)
429 2q6t_A DNAB replication FORK h 94.7 0.048 1.6E-06 61.7 7.7 25 54-78 202-226 (444)
430 1nn5_A Similar to deoxythymidy 94.7 0.016 5.5E-07 58.2 3.5 27 52-78 9-35 (215)
431 2wwf_A Thymidilate kinase, put 94.7 0.016 5.3E-07 58.2 3.3 25 53-77 11-35 (212)
432 2if2_A Dephospho-COA kinase; a 94.7 0.014 4.7E-07 58.4 2.8 22 54-76 3-24 (204)
433 2qor_A Guanylate kinase; phosp 94.7 0.016 5.3E-07 58.0 3.2 23 459-481 14-36 (204)
434 1m7g_A Adenylylsulfate kinase; 94.6 0.024 8.2E-07 57.0 4.7 36 459-494 27-63 (211)
435 3tau_A Guanylate kinase, GMP k 94.6 0.017 5.6E-07 58.1 3.4 25 52-76 8-32 (208)
436 3e70_C DPA, signal recognition 94.6 0.11 3.7E-06 55.9 9.9 34 458-491 130-163 (328)
437 3e2i_A Thymidine kinase; Zn-bi 94.6 0.045 1.5E-06 54.4 6.3 95 459-555 30-127 (219)
438 2grj_A Dephospho-COA kinase; T 94.6 0.018 6.2E-07 56.9 3.5 23 54-76 14-36 (192)
439 1lvg_A Guanylate kinase, GMP k 94.6 0.02 6.7E-07 57.0 3.7 25 52-76 4-28 (198)
440 3d03_A Phosphohydrolase; glyce 94.5 0.018 6.2E-07 60.3 3.6 56 680-735 26-84 (274)
441 2j37_W Signal recognition part 94.5 0.16 5.5E-06 57.8 11.6 41 457-497 101-141 (504)
442 1uf9_A TT1252 protein; P-loop, 94.5 0.022 7.4E-07 56.7 4.0 22 459-480 10-31 (203)
443 3nh6_A ATP-binding cassette SU 94.5 0.042 1.4E-06 58.5 6.3 128 455-622 78-262 (306)
444 2z43_A DNA repair and recombin 94.5 0.05 1.7E-06 58.7 7.0 80 50-136 105-215 (324)
445 1jjv_A Dephospho-COA kinase; P 94.5 0.019 6.4E-07 57.5 3.3 21 459-479 4-24 (206)
446 3lda_A DNA repair protein RAD5 94.5 0.062 2.1E-06 59.5 7.8 37 459-495 180-222 (400)
447 3ake_A Cytidylate kinase; CMP 94.5 0.024 8.3E-07 56.6 4.2 23 459-481 4-26 (208)
448 2bdt_A BH3686; alpha-beta prot 94.4 0.018 6E-07 56.8 3.0 23 54-76 4-26 (189)
449 3ney_A 55 kDa erythrocyte memb 94.4 0.021 7.3E-07 56.4 3.6 26 51-76 18-43 (197)
450 1uj2_A Uridine-cytidine kinase 94.4 0.033 1.1E-06 57.8 5.2 39 459-497 24-67 (252)
451 1m7g_A Adenylylsulfate kinase; 94.4 0.027 9.3E-07 56.6 4.4 29 49-77 22-50 (211)
452 2v54_A DTMP kinase, thymidylat 94.4 0.017 5.7E-07 57.6 2.8 25 52-76 4-28 (204)
453 2j9r_A Thymidine kinase; TK1, 94.4 0.043 1.5E-06 54.7 5.6 23 56-78 32-54 (214)
454 3sfz_A APAF-1, apoptotic pepti 94.4 0.25 8.5E-06 63.7 14.5 47 427-480 124-170 (1249)
455 2z0h_A DTMP kinase, thymidylat 94.4 0.02 7E-07 56.5 3.3 24 55-78 3-26 (197)
456 1vma_A Cell division protein F 94.4 0.053 1.8E-06 57.8 6.7 40 457-496 104-143 (306)
457 2j41_A Guanylate kinase; GMP, 94.4 0.02 7E-07 57.1 3.3 25 52-76 6-30 (207)
458 3lxw_A GTPase IMAP family memb 94.4 0.16 5.4E-06 52.3 10.2 23 52-74 21-43 (247)
459 3vkw_A Replicase large subunit 94.4 0.13 4.6E-06 57.0 10.1 90 458-554 162-259 (446)
460 3tau_A Guanylate kinase, GMP k 94.3 0.023 7.9E-07 57.0 3.6 23 459-481 10-32 (208)
461 4a1f_A DNAB helicase, replicat 94.3 0.15 5.1E-06 54.9 10.1 147 12-167 6-203 (338)
462 1ls1_A Signal recognition part 94.3 0.11 3.9E-06 54.9 9.1 96 458-554 99-207 (295)
463 3a00_A Guanylate kinase, GMP k 94.3 0.021 7.3E-07 56.0 3.2 25 53-77 2-26 (186)
464 3d3q_A TRNA delta(2)-isopenten 94.3 0.022 7.5E-07 61.2 3.5 23 54-76 9-31 (340)
465 2v54_A DTMP kinase, thymidylat 94.2 0.027 9.1E-07 56.1 3.9 32 459-492 6-37 (204)
466 3tr0_A Guanylate kinase, GMP k 94.2 0.024 8.4E-07 56.4 3.6 24 53-76 8-31 (205)
467 3ake_A Cytidylate kinase; CMP 94.2 0.031 1E-06 55.8 4.3 23 54-76 4-26 (208)
468 2j41_A Guanylate kinase; GMP, 94.1 0.025 8.4E-07 56.5 3.4 23 459-481 8-30 (207)
469 4e22_A Cytidylate kinase; P-lo 94.1 0.033 1.1E-06 57.8 4.4 25 52-76 27-51 (252)
470 2bdt_A BH3686; alpha-beta prot 94.1 0.026 8.8E-07 55.5 3.4 23 459-481 4-26 (189)
471 3zvl_A Bifunctional polynucleo 94.1 0.041 1.4E-06 61.6 5.4 24 53-76 259-282 (416)
472 3exa_A TRNA delta(2)-isopenten 94.1 0.029 9.8E-07 59.3 3.8 23 459-481 5-27 (322)
473 3d3q_A TRNA delta(2)-isopenten 94.1 0.03 1E-06 60.2 4.0 23 459-481 9-31 (340)
474 2bbw_A Adenylate kinase 4, AK4 94.1 0.028 9.5E-07 58.0 3.7 23 459-481 29-51 (246)
475 1jjv_A Dephospho-COA kinase; P 94.1 0.019 6.4E-07 57.4 2.3 21 54-74 4-24 (206)
476 1svm_A Large T antigen; AAA+ f 94.0 0.034 1.2E-06 61.0 4.5 96 50-171 167-265 (377)
477 3ney_A 55 kDa erythrocyte memb 94.0 0.033 1.1E-06 55.1 3.9 23 459-481 21-43 (197)
478 2gxq_A Heat resistant RNA depe 94.0 0.23 7.9E-06 49.2 10.4 24 53-76 39-63 (207)
479 1odf_A YGR205W, hypothetical 3 94.0 0.077 2.6E-06 56.1 7.0 24 459-482 33-56 (290)
480 2f6r_A COA synthase, bifunctio 94.0 0.031 1.1E-06 59.0 3.9 21 459-479 77-97 (281)
481 3tr0_A Guanylate kinase, GMP k 94.0 0.031 1.1E-06 55.6 3.8 23 459-481 9-31 (205)
482 3b9q_A Chloroplast SRP recepto 94.0 0.094 3.2E-06 55.8 7.7 32 458-489 101-132 (302)
483 2ius_A DNA translocase FTSK; n 94.0 0.37 1.3E-05 54.8 12.9 71 531-633 299-373 (512)
484 1rj9_A FTSY, signal recognitio 93.9 0.064 2.2E-06 57.1 6.2 33 458-490 103-135 (304)
485 1uj2_A Uridine-cytidine kinase 93.9 0.039 1.3E-06 57.2 4.4 25 52-76 22-46 (252)
486 3eph_A TRNA isopentenyltransfe 93.9 0.036 1.2E-06 60.7 4.2 23 459-481 4-26 (409)
487 1ex7_A Guanylate kinase; subst 93.9 0.029 1E-06 54.9 3.2 23 459-481 3-25 (186)
488 1xjc_A MOBB protein homolog; s 93.9 0.054 1.9E-06 52.0 5.0 34 459-492 6-39 (169)
489 1kao_A RAP2A; GTP-binding prot 93.9 0.16 5.5E-06 47.9 8.5 23 53-75 4-26 (167)
490 3bgw_A DNAB-like replicative h 93.8 0.051 1.8E-06 61.2 5.6 25 54-78 199-223 (444)
491 2qt1_A Nicotinamide riboside k 93.8 0.032 1.1E-06 55.8 3.5 36 457-496 21-56 (207)
492 2og2_A Putative signal recogni 93.8 0.14 4.9E-06 55.6 8.9 34 457-490 157-190 (359)
493 3tqc_A Pantothenate kinase; bi 93.7 0.11 3.9E-06 55.4 7.7 24 459-482 94-117 (321)
494 4e22_A Cytidylate kinase; P-lo 93.7 0.049 1.7E-06 56.4 4.7 23 459-481 29-51 (252)
495 1lvg_A Guanylate kinase, GMP k 93.6 0.035 1.2E-06 55.2 3.4 23 459-481 6-28 (198)
496 4b3f_X DNA-binding protein smu 93.6 0.16 5.3E-06 60.5 9.6 30 531-560 432-461 (646)
497 1vht_A Dephospho-COA kinase; s 93.6 0.038 1.3E-06 55.8 3.7 21 459-479 6-26 (218)
498 3a00_A Guanylate kinase, GMP k 93.6 0.032 1.1E-06 54.7 3.1 23 459-481 3-25 (186)
499 2wsm_A Hydrogenase expression/ 93.6 0.036 1.2E-06 56.0 3.4 41 36-76 14-54 (221)
500 1q3t_A Cytidylate kinase; nucl 93.6 0.049 1.7E-06 55.8 4.5 37 452-492 12-48 (236)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=3.2e-74 Score=713.57 Aligned_cols=692 Identities=56% Similarity=0.902 Sum_probs=595.6
Q ss_pred chhhhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC
Q psy14500 7 DEEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL 86 (938)
Q Consensus 7 ~e~~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~ 86 (938)
++...+.|++|+.+|+++++|++|+++||++++++++..++.+..++|+||+||||||||++|+++|+.+..+.+|..+.
T Consensus 146 ~~~~~~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~ 225 (854)
T 1qvr_A 146 AESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLK 225 (854)
T ss_dssp CCCCCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTST
T ss_pred ccccchhHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhc
Confidence 45567899999999999999999999999999999999999999899999999999999999999999998888888888
Q ss_pred CCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEe
Q psy14500 87 SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGA 166 (938)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~ 166 (938)
+.+++.++++.+..+.++.|+++..++.++..+....+++||||||+|.+.+.+...+..++.+.|+..++++.+.+|++
T Consensus 226 ~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~~~i~~I~a 305 (854)
T 1qvr_A 226 GKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGA 305 (854)
T ss_dssp TCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHTTCCCEEEE
T ss_pred CCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhCCCeEEEEe
Confidence 99999999999988888999999999999999987667899999999999877766666778889999999999999999
Q ss_pred cChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhH
Q psy14500 167 TTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDL 246 (938)
Q Consensus 167 tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~l 246 (938)
||.+++.. +.+++++.+||+.|.|++|+.+++..|++.++..+...+++.++++++..++.++.+|++.+++|++++++
T Consensus 306 t~~~~~~~-~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~lp~kai~l 384 (854)
T 1qvr_A 306 TTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDL 384 (854)
T ss_dssp ECHHHHHH-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCTHHHHHHH
T ss_pred cCchHHhh-hccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccChHHHHHH
Confidence 99999877 67899999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 247 IDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQ 326 (938)
Q Consensus 247 l~~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (938)
++++++..+....+.|..+..+++.+.++..+...+.++.+..+.+|+.++++++..++.++..+.+.|..++..+..+.
T Consensus 385 ldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 464 (854)
T 1qvr_A 385 IDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWEREREILRKLR 464 (854)
T ss_dssp HHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCC
Q psy14500 327 QIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIP 406 (938)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~ 406 (938)
..+.+++.++..++.+...+++.+++++.+..++++++.++..... . .....+.+.++.+++..+++.++++|
T Consensus 465 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~v~~~~l~~~v~~~~~ip 537 (854)
T 1qvr_A 465 EAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK-L------RGARFVRLEVTEEDIAEIVSRWTGIP 537 (854)
T ss_dssp HHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH-S------SSCSSCCSEECHHHHHHHHHTTSSCH
T ss_pred HHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhh-h------cccccccCCcCHHHHHHHHHHHhCCC
Confidence 9999999999999999999999999999999999999998876542 0 13456678899999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC
Q psy14500 407 VSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 486 (938)
Q Consensus 407 ~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~ 486 (938)
...+...+...+..++..+.+.++||+.+++.+...+...+.++.+|.+|.+++||+||||||||++|++||+.+++.+.
T Consensus 538 ~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~ 617 (854)
T 1qvr_A 538 VSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE 617 (854)
T ss_dssp HHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGG
T ss_pred hHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCC
Confidence 88877777777778888899999999999999999999999888889999899999999999999999999999998889
Q ss_pred ceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCcee
Q psy14500 487 SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 566 (938)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~ 566 (938)
+++.++|+++......+.++|.+++|+|+..++.++..++..+++|||||||+++++++++.|+++|++|.+++..|+++
T Consensus 618 ~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~v 697 (854)
T 1qvr_A 618 AMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTV 697 (854)
T ss_dssp GEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCE
T ss_pred cEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCceECCCCCEe
Confidence 99999999999988899999999999999988889999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEecCCCchhhhhhhc--chHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHH
Q psy14500 567 NFRNTIIVMTSNLGSDKIKEMEK--GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKL 644 (938)
Q Consensus 567 ~~~~~iiI~ttn~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~ 644 (938)
++.+++||+|||.+...+.+... .....+...+.+.+...|+|+|++||+.++.|.|++.+++..|+...+.++..++
T Consensus 698 d~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~ 777 (854)
T 1qvr_A 698 DFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARL 777 (854)
T ss_dssp ECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998776644211 1234566777777899999999999999999999999999999999999999998
Q ss_pred HccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehh
Q psy14500 645 LKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 714 (938)
Q Consensus 645 ~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v 714 (938)
...++.+.++++++++|++.+|+|++|+|+|.+. +++.+ ..+....++.|++.+.+...+++
T Consensus 778 ~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~---i~~~~-----~~~~~~~i~~~~~~~~~~~~~~~ 839 (854)
T 1qvr_A 778 AEKRISLELTEAAKDFLAERGYDPVFGARPLRRV---IQREL-----ETPLAQKILAGEVKEGDRVQVDV 839 (854)
T ss_dssp HTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHH---HHHHT-----HHHHHHHHHHTSSCSSCEEEEEC
T ss_pred HhCCceEEECHHHHHHHHHcCCCCCCChHHHHHH---HHHHH-----HHHHHHHHHhCcCCCCCEEEEEE
Confidence 8888889999999999999999999999999998 88877 34566778899998887776654
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=3.9e-65 Score=626.21 Aligned_cols=589 Identities=53% Similarity=0.853 Sum_probs=479.8
Q ss_pred chhhhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC
Q psy14500 7 DEEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL 86 (938)
Q Consensus 7 ~e~~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~ 86 (938)
++.+.+.|++|+.+|+++++|++++++||++++++++...+.+..++|+||+||||||||++|+++|+.+.++.+|..+.
T Consensus 156 ~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~ 235 (758)
T 3pxi_A 156 SNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (758)
T ss_dssp CSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred cchhhhHHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhc
Confidence 45678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEe
Q psy14500 87 SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGA 166 (938)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~ 166 (938)
++.++.+++ +.++.|+++..++.+|..+.. .+++||||| ++.+.++.|++.++++.+++|++
T Consensus 236 ~~~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~-~~~~iLfiD------------~~~~~~~~L~~~l~~~~v~~I~a 297 (758)
T 3pxi_A 236 DKRVMTLDM-----GTKYRGEFEDRLKKVMDEIRQ-AGNIILFID------------AAIDASNILKPSLARGELQCIGA 297 (758)
T ss_dssp SCCEECC---------------CTTHHHHHHHHHT-CCCCEEEEC------------C--------CCCTTSSSCEEEEE
T ss_pred CCeEEEecc-----cccccchHHHHHHHHHHHHHh-cCCEEEEEc------------CchhHHHHHHHHHhcCCEEEEeC
Confidence 999998887 567889999999999999985 457899999 23467788999999999999999
Q ss_pred cChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhH
Q psy14500 167 TTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDL 246 (938)
Q Consensus 167 tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~l 246 (938)
||..+|++++.+++++.+||..|.|+.|+.+++..||+.+...+...+++.+++.++..++.++.+|++++++|++++++
T Consensus 298 t~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~l 377 (758)
T 3pxi_A 298 TTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (758)
T ss_dssp CCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred CChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHH
Confidence 99999998889999999999889999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 247 IDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQ 326 (938)
Q Consensus 247 l~~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (938)
++.+++.+.......|..+..+++.+.++..+.+.+....+.. +..+++.++.+++.++..+...|..+
T Consensus 378 l~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~l~~~~~~~~~~-------- 446 (758)
T 3pxi_A 378 IDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFE---KAASLRDTEQRLREQVEDTKKSWKEK-------- 446 (758)
T ss_dssp HHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCSH---HHHHHHHHHHHHHHHHHHHHSGGGHH--------
T ss_pred HHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHh--------
Confidence 9999999999888899999999999999888877766655432 22333333333322222222211111
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCC
Q psy14500 327 QIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIP 406 (938)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~ 406 (938)
.......++.+++..+++.++++|
T Consensus 447 --------------------------------------------------------~~~~~~~v~~~~i~~~v~~~~~ip 470 (758)
T 3pxi_A 447 --------------------------------------------------------QGQENSEVTVDDIAMVVSSWTGVP 470 (758)
T ss_dssp --------------------------------------------------------HHCC---CCTHHHHHHHHTTC---
T ss_pred --------------------------------------------------------hcccCcccCHHHHHHHHHHHhCCC
Confidence 012245689999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC
Q psy14500 407 VSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 486 (938)
Q Consensus 407 ~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~ 486 (938)
+..+...+...+..++..+.+.++||+.+++.+..++...+.+...|.+|.+++||+||||||||++|+++|+.+++.+.
T Consensus 471 ~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~ 550 (758)
T 3pxi_A 471 VSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEE 550 (758)
T ss_dssp ----CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTT
T ss_pred hHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCc
Confidence 99888888777888899999999999999999999999999999999999999999999999999999999999999899
Q ss_pred ceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCcee
Q psy14500 487 SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 566 (938)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~ 566 (938)
+++++||+++....... ++.+++.++..+++|||||||+++++++++.|+++|++|.+++..|+.+
T Consensus 551 ~~i~i~~s~~~~~~~~~--------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~ 616 (758)
T 3pxi_A 551 SMIRIDMSEYMEKHSTS--------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTV 616 (758)
T ss_dssp CEEEEEGGGGCSSCCCC-----------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CC
T ss_pred ceEEEechhcccccccc--------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEe
Confidence 99999999987653221 3457788888999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHc
Q psy14500 567 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 646 (938)
Q Consensus 567 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~ 646 (938)
++.+++||+|||.+.... ..+...+...|+|+|++||+.+|.|+|++.+++..|+...+..+..++..
T Consensus 617 ~~~~~~iI~ttn~~~~~~------------~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~ 684 (758)
T 3pxi_A 617 DFRNTILIMTSNVGASEK------------DKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKE 684 (758)
T ss_dssp BCTTCEEEEEESSSTTCC------------HHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccCCeEEEEeCCCChhhH------------HHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999876531 22334456679999999999999999999999999999999999999988
Q ss_pred cCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehh
Q psy14500 647 MNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 714 (938)
Q Consensus 647 ~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v 714 (938)
.++.+.++++++++|++.+|+|++|+|+|.+. +++.+ ..+....++.|++...+...+++
T Consensus 685 ~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~---i~~~v-----~~~l~~~~l~~~~~~~~~~~~~~ 744 (758)
T 3pxi_A 685 QDLSIELTDAAKAKVAEEGVDLEYGARPLRRA---IQKHV-----EDRLSEELLRGNIHKGQHIVLDV 744 (758)
T ss_dssp TTCEEEECHHHHHHHHGGGCCTTTTTTTHHHH---HHHHT-----HHHHHHHHHTTCSCSSSEEEEEE
T ss_pred CCCeEEECHHHHHHHHHhCCCCCCCChHHHHH---HHHHH-----HHHHHHHHHcCCCCCCCEEEEEE
Confidence 88889999999999999999999999999999 88877 45667778889888777766543
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=4.2e-63 Score=609.79 Aligned_cols=571 Identities=46% Similarity=0.752 Sum_probs=495.5
Q ss_pred hhhhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCC
Q psy14500 8 EEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLS 87 (938)
Q Consensus 8 e~~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~ 87 (938)
|.+.+.|++|+.+|+++++|++|+++||++++++++...|.+..++|+||+||||||||++|++++..+.+..+|..+.+
T Consensus 163 ~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~ 242 (758)
T 1r6b_X 163 AGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD 242 (758)
T ss_dssp ------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTT
T ss_pred ccchhHHHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 45677899999999999999999999999999999999999999999999999999999999999999988888988899
Q ss_pred CeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC-CccchhhhhhhhccCCceEEEEe
Q psy14500 88 KKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE-GSIDAGNMLKPELSRGELHCIGA 166 (938)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~-~~~~~~~~L~~~l~~~~i~vI~~ 166 (938)
+.++.++++.+..+.++.|.++..++.++..+... +++||||||+|.+.+.+... ++.++.+.|+..++++.+.+|++
T Consensus 243 ~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~-~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~a 321 (758)
T 1r6b_X 243 CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGS 321 (758)
T ss_dssp CEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSS-SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEE
T ss_pred CEEEEEcHHHHhccccccchHHHHHHHHHHHHHhc-CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999998888889999999999999998744 47899999999998776543 45677889999999999999999
Q ss_pred cChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhH
Q psy14500 167 TTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDL 246 (938)
Q Consensus 167 tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~l 246 (938)
||.+++.+.+.+|++|.+||..+.|+.|+.+++..|++.+...+...+++.++++++..++.++.+|+..+++|++++++
T Consensus 322 t~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~l 401 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_dssp ECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHH
T ss_pred eCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHH
Confidence 99999888888999999999999999999999999999999888888899999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 247 IDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQ 326 (938)
Q Consensus 247 l~~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (938)
++.++........
T Consensus 402 ld~a~~~~~~~~~------------------------------------------------------------------- 414 (758)
T 1r6b_X 402 IDEAGARARLMPV------------------------------------------------------------------- 414 (758)
T ss_dssp HHHHHHHHHHSSS-------------------------------------------------------------------
T ss_pred HHHHHHHHhcccc-------------------------------------------------------------------
Confidence 9888754321000
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhCCC
Q psy14500 327 QIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIP 406 (938)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~~ 406 (938)
..-...|+.+++..+++.++++|
T Consensus 415 ---------------------------------------------------------~~~~~~v~~~di~~~~~~~~~ip 437 (758)
T 1r6b_X 415 ---------------------------------------------------------SKRKKTVNVADIESVVARIARIP 437 (758)
T ss_dssp ---------------------------------------------------------CCCCCSCCHHHHHHHHHHHSCCC
T ss_pred ---------------------------------------------------------cccCCccCHHHHHHHHHHhcCCC
Confidence 00024588999999999999999
Q ss_pred ccccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC
Q psy14500 407 VSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 486 (938)
Q Consensus 407 ~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~ 486 (938)
+..+...+...+..+++.+.+.++||+.+++.+..++...+.++..|.+|.+++||+||||||||++|+++|+.+ +.
T Consensus 438 ~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~~ 514 (758)
T 1r6b_X 438 EKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GI 514 (758)
T ss_dssp CCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---TC
T ss_pred ccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cC
Confidence 998888888889999999999999999999999999999999999999999999999999999999999999999 67
Q ss_pred ceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCcee
Q psy14500 487 SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 566 (938)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~ 566 (938)
+++.++|+++...+.++.++|.++||+|+++++.+.+.++.++++|||||||+++++++++.|+++|++|.+++..|+.+
T Consensus 515 ~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~ 594 (758)
T 1r6b_X 515 ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKA 594 (758)
T ss_dssp EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEE
T ss_pred CEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEE
Confidence 99999999999999999999999999999988888999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEecCCCchhhhhh-hcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHH
Q psy14500 567 NFRNTIIVMTSNLGSDKIKEM-EKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLL 645 (938)
Q Consensus 567 ~~~~~iiI~ttn~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~ 645 (938)
++.+++||+|||.+...+.+. ++.........+.+.+...|+|+|++||+.+|.|+|++.+++..|+...+.++..++.
T Consensus 595 ~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp ECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987655431 1111111123344566778999999999999999999999999999999999998888
Q ss_pred ccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehh
Q psy14500 646 KMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 714 (938)
Q Consensus 646 ~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v 714 (938)
..++.+.++++++++|++.+|++++|+|++.+. +++.+ ..+....++.|++...+...+.+
T Consensus 675 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~---i~~~~-----~~~l~~~~l~~~~~~~~~~~~~~ 735 (758)
T 1r6b_X 675 QKGVSLEVSQEARNWLAEKGYDRAMGARPMARV---IQDNL-----KKPLANELLFGSLVDGGQVTVAL 735 (758)
T ss_dssp HTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHH---HHHHH-----THHHHHHHHHSTTTTCEEEEEEE
T ss_pred HCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHH---HHHHH-----HHHHHHHHHcCcCCCCCEEEEEE
Confidence 888889999999999999999999999999998 88877 44566777888887777665543
No 4
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=100.00 E-value=1.1e-42 Score=370.86 Aligned_cols=262 Identities=35% Similarity=0.683 Sum_probs=235.7
Q ss_pred ccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHHHHHhccccCCcc
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSKL 749 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~~ 749 (938)
+.++||||+++.+.++++.+++.+..+.+|++||++|||+.+.++++++++++..+++|+||||.+++.+..+.......
T Consensus 4 ~vigDiHG~~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~~~l~~l~~l~~~~~~v~GNHe~~~l~~~~g~~~~~~~ 83 (280)
T 2dfj_A 4 YLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPK 83 (280)
T ss_dssp EEECCCCSCHHHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHHHHHHHHHHTGGGEEECCCHHHHHHHHHHTTSSCCCGG
T ss_pred EEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccHHHHHHHHhCCCceEEEECCCcHHHHhHhcCCcccchh
Confidence 67899999999999999999986667899999999999999999999999987679999999999999988765544445
Q ss_pred ccHHHhhCCCCHHHHHHHHhcCCceEEeC--CEEEEecccCcCCCHHHHHHHhHHHHHHhhhccHHHHHHHhcCCCCCCC
Q psy14500 750 DTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINW 827 (938)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~l~~lp~~~~~~--~~~~vHAg~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w 827 (938)
+++.+++......++++||++||+++..+ +++|||||++|.|+.++...++++++..|.++.|..++..+|++.+..|
T Consensus 84 ~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHaGi~p~~~l~~~~~~~r~~e~~l~~~~~~~~~~~l~~d~~~~w 163 (280)
T 2dfj_A 84 DRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNW 163 (280)
T ss_dssp GCCHHHHTSTTHHHHHHHHHTSCSEEEETTTTEEEESSCCCTTCCHHHHHHHHHHHHHHHHSTTHHHHHHHTTCSCCCSC
T ss_pred hhHHHHhhhhHHHHHHHHHHhCCcEEEECCCeEEEEeCCCCcCcCHHHHHHHHHHHHHhhcCCcHHHHHHHhcCCCCCCc
Confidence 56667777777889999999999998865 7999999999999999988999999999998999988999999999999
Q ss_pred CccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCCcCCCceEEEccCCCc-CcccC
Q psy14500 828 DNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL-GLIMK 906 (938)
Q Consensus 828 ~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~~~~-~~~~~ 906 (938)
.+.+ +|.+|.+++.|++||++||+.+|.+++..++.+ ...++.+.||++.+++...+.+|||||||+. ++...
T Consensus 164 ~~~~-----~G~~r~~~~~~~~tr~rf~~~~g~l~~~~r~~~-~~~~~g~~~w~~~~~~~~~~~~vv~GHt~~~~g~~~~ 237 (280)
T 2dfj_A 164 SPEL-----RGLGRLRFITNAFTRMRFCFPNGQLDMYSKESP-EEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTP 237 (280)
T ss_dssp CTTC-----CHHHHHHHHHHHHHTCCEEETTBEEESSCCSCG-GGCCSSCEEGGGSCCTTTTTSEEEECCCGGGTTCSCC
T ss_pred CCCC-----CCceeEEEeccHHHHHHHhhcCCcEeEEeccCh-hhcCccccchhhccccccCCceEEECCcccccCcccc
Confidence 9875 999999999999999999999999999888775 3446789999999988778899999999987 67788
Q ss_pred CCeEEeccccccCCeEEEEEecCCcEEEeeC
Q psy14500 907 PNIICLDTGCVWGNKLTALCLEDRSIIQVNN 937 (938)
Q Consensus 907 ~~~~~lDtG~~~gg~Lta~~l~~~~~~~v~~ 937 (938)
+|+++|||||+|||+|||+++++++++||++
T Consensus 238 ~~~i~iDTG~v~gG~Ltal~l~~~~~~~v~~ 268 (280)
T 2dfj_A 238 EGIYALDTGCCWGGSLTCLRWEDKQYFVQPS 268 (280)
T ss_dssp TTEEECCCCTTTTSEEEEEETTTTEEEEEEC
T ss_pred CCEEEeecccccCCEEEEEEeCCCcEEEEEC
Confidence 9999999999999999999999999999986
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.2e-38 Score=376.83 Aligned_cols=409 Identities=20% Similarity=0.311 Sum_probs=277.3
Q ss_pred CCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
-+|++|.|.++++++|.+.+. ...+.+||||||||||||++|+++|+++ +.+++.++
T Consensus 201 v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v~ 270 (806)
T 3cf2_A 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLIN 270 (806)
T ss_dssp CCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEEE
T ss_pred CChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEEE
Confidence 478899999988777776542 2456789999999999999999999988 88999999
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cchhhhhhhhc----cCCceEEEEec
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPEL----SRGELHCIGAT 167 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l----~~~~i~vI~~t 167 (938)
+..+. +++.|+.+..++.+|..|.. ..|+||||||+|.+++.++...+ ..+.+.|+..| +++.+++|+||
T Consensus 271 ~~~l~--sk~~gese~~lr~lF~~A~~-~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaaT 347 (806)
T 3cf2_A 271 GPEIM--SKLAGESESNLRKAFEEAEK-NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAAT 347 (806)
T ss_dssp HHHHH--SSCTTHHHHHHHHHHHHHTT-SCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEEC
T ss_pred hHHhh--cccchHHHHHHHHHHHHHHH-cCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEec
Confidence 99988 57899999999999999984 45999999999999987654332 22444555555 45689999999
Q ss_pred ChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhh
Q psy14500 168 TLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAI 244 (938)
Q Consensus 168 n~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~ 244 (938)
|.++ .+|++++| ||+. |+|+.|+.++|..||+.++.......+ ..+..++..+.+|. +++..
T Consensus 348 N~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~d-----vdl~~lA~~T~Gfs-----gaDL~ 412 (806)
T 3cf2_A 348 NRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADD-----VDLEQVANETHGHV-----GADLA 412 (806)
T ss_dssp SSTT-----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTT-----CCHHHHHHHCCSCC-----HHHHH
T ss_pred CChh-----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcc-----cCHHHHHHhcCCCC-----HHHHH
Confidence 9998 89999999 9996 999999999999999988765433322 23567777776665 55555
Q ss_pred hHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 245 DLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKD 324 (938)
Q Consensus 245 ~ll~~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (938)
.++.+|+..+..+. ............
T Consensus 413 ~Lv~eA~~~A~~r~--------------------~~~i~~~~~~~~---------------------------------- 438 (806)
T 3cf2_A 413 ALCSEAALQAIRKK--------------------MDLIDLEDETID---------------------------------- 438 (806)
T ss_dssp HHHHHHHHHHHHHH--------------------HHHGGGTCCCCS----------------------------------
T ss_pred HHHHHHHHHHHHhc--------------------cccccccccccc----------------------------------
Confidence 66665543321100 000000000000
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHHhhC
Q psy14500 325 SQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTG 404 (938)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~ 404 (938)
..... ...++.+|+..++.....
T Consensus 439 -----------------------~e~~~----------------------------------~~~v~~~Df~~Al~~~~p 461 (806)
T 3cf2_A 439 -----------------------AEVMN----------------------------------SLAVTMDDFRWALSQSNP 461 (806)
T ss_dssp -----------------------HHHHH----------------------------------HCEECTTHHHHHHSSSSC
T ss_pred -----------------------hhhhc----------------------------------cceeeHHHHHHHHHhCCC
Confidence 00000 011222222222211110
Q ss_pred -------CCccccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcC----CCCCCCCceEEEEeCCCCCcHHHH
Q psy14500 405 -------IPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSG----LSDAKRPYGSFMFLGPTGVGKTEL 473 (938)
Q Consensus 405 -------~~~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~----~~~~~~~~~~iLl~GppGtGKT~l 473 (938)
...+... ...+.|.+++++.+.+.+...... ......|...+||+||||||||++
T Consensus 462 s~~r~~~~~~p~v~--------------w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~l 527 (806)
T 3cf2_A 462 SALRETVVEVPQVT--------------WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLL 527 (806)
T ss_dssp CCCCCCCCBCCCCC--------------STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHH
T ss_pred cccccccccCCCCC--------------HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHH
Confidence 0001111 134667777777777766432110 011122334699999999999999
Q ss_pred HHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccCH--------
Q psy14500 474 CKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-------- 543 (938)
Q Consensus 474 A~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-------- 543 (938)
|+++|..+ +.+|+.++.+++.+. |+|..+. +.++...+...+|||||||||.+.+
T Consensus 528 AkaiA~e~---~~~f~~v~~~~l~s~------------~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~ 592 (806)
T 3cf2_A 528 AKAIANEC---QANFISIKGPELLTM------------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGD 592 (806)
T ss_dssp HHHHHHTT---TCEEEECCHHHHHTT------------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC---------
T ss_pred HHHHHHHh---CCceEEeccchhhcc------------ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCC
Confidence 99999998 889999998877653 7776654 5566667777889999999998642
Q ss_pred ------HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cC
Q psy14500 544 ------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RI 615 (938)
Q Consensus 544 ------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~ 615 (938)
.+.+.||..|+.-. ...++++|+|||.+.. ++++++. ||
T Consensus 593 ~~~~~~rv~~~lL~~mdg~~---------~~~~V~vi~aTN~p~~------------------------lD~AllRpgRf 639 (806)
T 3cf2_A 593 GGGAADRVINQILTEMDGMS---------TKKNVFIIGATNRPDI------------------------IDPAILRPGRL 639 (806)
T ss_dssp -----CHHHHHHHHHHHSSC---------SSSSEEEECC-CCSSS------------------------SCHHHHSTTTS
T ss_pred CchHHHHHHHHHHHHHhCCC---------CCCCEEEEEeCCCchh------------------------CCHhHcCCCcc
Confidence 36889999998511 2345788889997543 7888887 99
Q ss_pred CeEEEccCCCHHHHHHHHHHHH
Q psy14500 616 DDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 616 ~~~i~f~~l~~e~~~~i~~~~l 637 (938)
|..|.|+.++.++..+|++..+
T Consensus 640 d~~i~v~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 640 DQLIYIPLPDEKSRVAILKANL 661 (806)
T ss_dssp CCEEEC-----CHHHHTTTTTS
T ss_pred eEEEEECCcCHHHHHHHHHHHh
Confidence 9999999999999999976544
No 6
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=100.00 E-value=3.2e-33 Score=322.39 Aligned_cols=289 Identities=55% Similarity=0.876 Sum_probs=244.2
Q ss_pred chhhhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC
Q psy14500 7 DEEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL 86 (938)
Q Consensus 7 ~e~~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~ 86 (938)
.+.+.+.|++|+.+|+++++|++|+++||++++++++...+.+...+|+||+||||||||++|+++|+.+..+.+|..+.
T Consensus 156 ~~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~ 235 (468)
T 3pxg_A 156 SNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILR 235 (468)
T ss_dssp CSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTS
T ss_pred CccCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEe
Q psy14500 87 SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGA 166 (938)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~ 166 (938)
+.+++.++++ +.+.|+++..++.+|..+.. .++.||||| ++.++++.|++.++++.+++|++
T Consensus 236 ~~~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~-~~~~iLfiD------------~~~~a~~~L~~~L~~g~v~vI~a 297 (468)
T 3pxg_A 236 DKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQ-AGNIILFID------------AAIDASNILKPSLARGELQCIGA 297 (468)
T ss_dssp SCCEECC---------------CTTHHHHHHHHHT-CCCCEEEEC------------C--------CCCTTSSSCEEEEE
T ss_pred CCeEEEeeCC-----ccccchHHHHHHHHHHHHHh-cCCeEEEEe------------CchhHHHHHHHhhcCCCEEEEec
Confidence 9999988886 55778888889999999885 457899999 23567889999999999999999
Q ss_pred cChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhH
Q psy14500 167 TTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDL 246 (938)
Q Consensus 167 tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~l 246 (938)
||.++|++.+.+++++.+||..|.|+.|+.+++..|++.+..++...+++.++++++..++.++.+|++.+++|++++++
T Consensus 298 t~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~l 377 (468)
T 3pxg_A 298 TTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDL 377 (468)
T ss_dssp CCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHH
T ss_pred CCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHH
Confidence 99999988889999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 247 IDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWK 316 (938)
Q Consensus 247 l~~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (938)
++.+++..+......|..+.+++..+..+..+........|. .++.+++.++.+++.++..++..|.
T Consensus 378 l~~a~~~~~~~~~~~p~~i~~l~~~i~~l~~~~~~~~~~~d~---~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (468)
T 3pxg_A 378 IDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEF---EKAASLRDTEQRLREQVEDTKKSWK 444 (468)
T ss_dssp HHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHSGGG
T ss_pred HHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcCH---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998887766666554 4455666666666666666655555
No 7
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.98 E-value=3e-31 Score=291.43 Aligned_cols=294 Identities=55% Similarity=0.894 Sum_probs=258.8
Q ss_pred HHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14500 413 VEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 492 (938)
Q Consensus 413 ~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 492 (938)
.+...+.++++.+.+.++||+.+++.+...+.....++..|.+|..++||+||||||||++|++||+.+...+.+++.++
T Consensus 3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred cHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 34566788999999999999999999999999998888889899889999999999999999999999988888999999
Q ss_pred cccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeE
Q psy14500 493 MSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTI 572 (938)
Q Consensus 493 ~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~i 572 (938)
|+.+........++|..+++.|....+.+...+..++++||||||++++++.+++.|+++|+++.+.+..+..+++.+++
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred cccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 99998888888999999999998887888888999999999999999999999999999999999998888999999999
Q ss_pred EEEecCCCchhhhhhhcc--hHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 573 IVMTSNLGSDKIKEMEKG--DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 573 iI~ttn~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
+|+|||.+...+.+..+. +.+.+...+.+.+...|+++|++||+.++.|.|++.+++..|+...+.++...+...+..
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~ 242 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRIS 242 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCE
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 999999987776665432 344556666677788999999999999999999999999999999999999888877778
Q ss_pred EEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehh
Q psy14500 651 LKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 714 (938)
Q Consensus 651 l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v 714 (938)
+.++++++++|++.+|++++++|++..+ +++++ ..+....++.|++.+.+...+.+
T Consensus 243 ~~~~~~~~~~l~~~~~~~~gn~R~L~~~---i~~~~-----~~~~~~~i~~~~~~~~~~i~i~~ 298 (311)
T 4fcw_A 243 LELTEAAKDFLAERGYDPVFGARPLRRV---IQREL-----ETPLAQKILAGEVKEGDRVQVDV 298 (311)
T ss_dssp EEECHHHHHHHHHHSCBTTTBTTTHHHH---HHHHT-----HHHHHHHHHHTSSCTTCEEEEEE
T ss_pred EEeCHHHHHHHHHhCCCccCCchhHHHH---HHHHH-----HHHHHHHHHhCCCCCCCEEEEEE
Confidence 9999999999999888878999999998 77766 23445677888887777665543
No 8
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=6.6e-31 Score=321.08 Aligned_cols=420 Identities=20% Similarity=0.304 Sum_probs=270.2
Q ss_pred HhcCCCCCccccHHHHHHHHHHHhc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEE
Q psy14500 25 ARLGKLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 91 (938)
Q Consensus 25 ~~~~~~~~lvG~~~~~~~l~~~l~~-------------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~ 91 (938)
..+-+|++++|++++++++...+.. ..+.++||+||||||||++|+++|..+ +..++
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i 267 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFF 267 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEE
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEE
Confidence 3456899999999998888887653 455689999999999999999999987 67889
Q ss_pred EEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cchhhhhhhhcc----CCceEEE
Q psy14500 92 LLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPELS----RGELHCI 164 (938)
Q Consensus 92 ~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l~----~~~i~vI 164 (938)
.+++..+. ..+.|+.+..+..+|+.+... .|+++||||+|.+.+.+..... ..+.+.|+..++ ...+++|
T Consensus 268 ~v~~~~l~--~~~~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI 344 (806)
T 1ypw_A 268 LINGPEIM--SKLAGESESNLRKAFEEAEKN-APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp EEEHHHHS--SSSTTHHHHHHHHHHHHHHHH-CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEE
T ss_pred EEEchHhh--hhhhhhHHHHHHHHHHHHHhc-CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEe
Confidence 99988876 457788999999999998754 4889999999999886543221 223445555553 4578999
Q ss_pred EecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCch
Q psy14500 165 GATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 241 (938)
Q Consensus 165 ~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 241 (938)
++||.++ .+++++.+ ||.. +.++.|+.++|..|++.+...+....+. .+..++..+.+|. ++
T Consensus 345 ~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~-----~l~~la~~t~g~~-----g~ 409 (806)
T 1ypw_A 345 AATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV-----DLEQVANETHGHV-----GA 409 (806)
T ss_dssp EECSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTC-----CTHHHHHSCSSCC-----HH
T ss_pred cccCCch-----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccc-----hhHHHHHhhcCcc-----hH
Confidence 9999997 88999998 9975 8999999999999999887764332222 2344555554444 22
Q ss_pred hhhhHHHHHHHHHHHhhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 242 KAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTL 321 (938)
Q Consensus 242 ~a~~ll~~a~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 321 (938)
....++..++.......... .+. .. .
T Consensus 410 dl~~l~~ea~~~a~r~~~~~------------------------i~~-~~----------------------------~- 435 (806)
T 1ypw_A 410 DLAALCSEAALQAIRKKMDL------------------------IDL-ED----------------------------E- 435 (806)
T ss_dssp HHHHHHHHHHHHHHHHTTTT------------------------TSC-HH----------------------------H-
T ss_pred HHHHHHHHHHHHHHhhhccc------------------------cch-hh----------------------------h-
Confidence 22222222221110000000 000 00 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccccccCChHHHHHHHHH
Q psy14500 322 IKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSR 401 (938)
Q Consensus 322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~ 401 (938)
.+.. . ......++.+++...+..
T Consensus 436 ----------------~~~~--------~---------------------------------~~~~~~v~~~d~~~al~~ 458 (806)
T 1ypw_A 436 ----------------TIDA--------E---------------------------------VMNSLAVTMDDFRWALSQ 458 (806)
T ss_dssp ----------------HCCH--------H---------------------------------HHTTCCCCTTHHHHHHHH
T ss_pred ----------------ccch--------h---------------------------------hhhhhhhhhhhhhccccc
Confidence 0000 0 000011222222222222
Q ss_pred hhCCCccccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcC----CCCCCCCceEEEEeCCCCCcHHHHHHHH
Q psy14500 402 TTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSG----LSDAKRPYGSFMFLGPTGVGKTELCKTL 477 (938)
Q Consensus 402 ~~~~~~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~----~~~~~~~~~~iLl~GppGtGKT~lA~~l 477 (938)
.......... ........+.+.|++.+++.+...+...... ......+..++||+||||||||++|++|
T Consensus 459 ~~~s~~~~~~-------~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakal 531 (806)
T 1ypw_A 459 SNPSALRETV-------VEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531 (806)
T ss_dssp SCCCCCCCCC-------CCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHH
T ss_pred cCchhhhhhc-------ccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHH
Confidence 1110000000 0000011246778888888887766432110 1111233447999999999999999999
Q ss_pred HHHhccCCCceEEeccccccchhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccC-------------
Q psy14500 478 SACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN------------- 542 (938)
Q Consensus 478 a~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~------------- 542 (938)
|..+ +.+++.++++++... |+|..+. +.++...+...++||||||||++.
T Consensus 532 a~~~---~~~~i~v~~~~l~~~------------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~ 596 (806)
T 1ypw_A 532 ANEC---QANFISIKGPELLTM------------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGA 596 (806)
T ss_dssp HHHH---TCCCCCCCCSSSTTC------------CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHH
T ss_pred HHHh---CCCEEEEechHhhhh------------hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchh
Confidence 9998 678888888876542 4554433 344555566667999999999852
Q ss_pred -HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEE
Q psy14500 543 -SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDII 619 (938)
Q Consensus 543 -~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i 619 (938)
..+++.||..|+.. ....++++|+|||.... +++++++ ||+.++
T Consensus 597 ~~~v~~~LL~~ld~~---------~~~~~v~vI~tTN~~~~------------------------ld~allrpgRf~~~i 643 (806)
T 1ypw_A 597 ADRVINQILTEMDGM---------STKKNVFIIGATNRPDI------------------------IDPAILRPGRLDQLI 643 (806)
T ss_dssp HHHHHHHHHTTCC---------------CCBCCCCCBSCGG------------------------GSCTTSSGGGTTSCC
T ss_pred HHHHHHHHHHHHhcc---------cccCCeEEEEecCCccc------------------------CCHHHhCccccCcee
Confidence 35678888888752 13356788999997542 6778887 999999
Q ss_pred EccCCCHHHHHHHHHHHHH
Q psy14500 620 VFRYLNRKNILSIANIQLN 638 (938)
Q Consensus 620 ~f~~l~~e~~~~i~~~~l~ 638 (938)
.|++++.++..+|++..+.
T Consensus 644 ~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 644 YIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CCCCCCCSHHHHHTTTTTS
T ss_pred ecCCCCHHHHHHHHHHHhc
Confidence 9999999999999766553
No 9
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=99.93 E-value=4.2e-26 Score=241.91 Aligned_cols=212 Identities=28% Similarity=0.422 Sum_probs=151.9
Q ss_pred ccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHHHHHhccccC-
Q psy14500 668 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKK- 746 (938)
Q Consensus 668 ~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~- 746 (938)
..+.++|+||+++.+.++++.+++.++.+.++++||++|+|+.+.++++++++++ +++|+||||.+++.+..+....
T Consensus 20 ~i~visDiHg~~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~~~~~l~~l~~~~--~~~v~GNHd~~~~~~~~~~~~~~ 97 (262)
T 2qjc_A 20 RVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRLG--AYSVLGNHDAKLLKLVKKLGKKE 97 (262)
T ss_dssp CEEEECCCTTCHHHHHHHHHHHTCCTTTSEEEECSCCSSSSSCHHHHHHHHHHHT--CEECCCHHHHHHHHHHHCC----
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhccCCCCEEEEecCCCCCCCCHHHHHHHHHHCC--CEEEeCcChHHHHhhhcCCCccc
Confidence 4477899999999999999999876666999999999999999999999998653 8999999999998876543211
Q ss_pred ----CccccHHHhhCCCCHHHHHHHHhcCCceEEeC--CEEEEecccCcCCCHHHHHHHhHHHHHHhhhccHHHHHHHhc
Q psy14500 747 ----SKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLY 820 (938)
Q Consensus 747 ----~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~--~~~~vHAg~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 820 (938)
.+..+...+......+++++||++||++++.+ ++++||||+.|.++.++. ....+
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~i~~~~i~~vHgg~~p~~~~~~~------~~~~l------------- 158 (262)
T 2qjc_A 98 CLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAGLHPQRPVDRQ------YEDEV------------- 158 (262)
T ss_dssp ---------CHHHHHHHCCHHHHHHHHTCCSEEEEGGGTEEEESSCCCTTSCGGGC------CHHHH-------------
T ss_pred cccccchHHHHHHHHhhhhHHHHHHHHcCCcEEEECCCcEEEEECCCCCCCCcccC------CHHHH-------------
Confidence 11111111112223478899999999999864 899999999998765421 00011
Q ss_pred CCCCCCCCccccccccccchhhHHHhhhcccccccCC------CCccccccccCCCCCCCCCCCCcccCCCCcCCCceEE
Q psy14500 821 NHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKI------DGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVL 894 (938)
Q Consensus 821 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~------~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv 894 (938)
+++|++.. +|.. .+.. +..++...+|+..+.+ ...||
T Consensus 159 -----------------------------~~ir~~~~~~~~~~~G~~---~~~~--d~~~~~~~~w~~~~~g---~~~vv 201 (262)
T 2qjc_A 159 -----------------------------TTMRNLIEKEQEATGGVT---LTAT--EETNDGGKPWASMWRG---PETVV 201 (262)
T ss_dssp -----------------------------HHCCEEEEC-------CC---EEEE--SCSTTCCEEGGGGCCC---SSEEE
T ss_pred -----------------------------hhhhhcccccccCCCCcc---cccc--CCCCcCCCChhhccCC---CCEEE
Confidence 11111110 1110 0000 0112345678776654 56899
Q ss_pred EccCCCcCcccCC--CeEEeccccccCCeEEEEEecCCcEEEeeC
Q psy14500 895 FGHWSTLGLIMKP--NIICLDTGCVWGNKLTALCLEDRSIIQVNN 937 (938)
Q Consensus 895 ~GH~~~~~~~~~~--~~~~lDtG~~~gg~Lta~~l~~~~~~~v~~ 937 (938)
||||++.++...+ ++++|||||++||+|||+++++++++||++
T Consensus 202 fGHt~~~~~~~~~~~~~i~IDtG~~~gG~Lt~l~l~~~~~~~~~~ 246 (262)
T 2qjc_A 202 FGHDARRGLQEQYKPLAIGLDSRCVYGGRLSAAVFPGGCIISVPG 246 (262)
T ss_dssp ECCCGGGCCBCTTTTTEEECCCBGGGTSEEEEEEETTTEEEEEEC
T ss_pred ECCCccccccccCCCCEEEeeCccccCCeeEEEEEcCCcEEEEec
Confidence 9999999998888 999999999999999999999999999986
No 10
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-23 Score=231.11 Aligned_cols=202 Identities=22% Similarity=0.270 Sum_probs=161.2
Q ss_pred hcCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
+.-+|++|.|.+++++.|.+.+. -..+.++|||||||||||++|+++|.++ +.+++.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~ 212 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIR 212 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceE
Confidence 44589999999999888877442 3567899999999999999999999999 899999
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC---ccc---hhhhhhhhc----cCCceE
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SID---AGNMLKPEL----SRGELH 162 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~---~~~~L~~~l----~~~~i~ 162 (938)
++.+.+. ++|.|+.+..++.+|..|... .|+||||||+|.+++.+.... +.. ..+.|+..| ....++
T Consensus 213 v~~s~l~--sk~vGese~~vr~lF~~Ar~~-aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 213 VSGAELV--QKYIGEGSRMVRELFVMAREH-APSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp EEGGGGS--CSSTTHHHHHHHHHHHHHHHT-CSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred EEhHHhh--ccccchHHHHHHHHHHHHHHh-CCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 9999988 679999999999999999854 599999999999998764322 112 233444444 346799
Q ss_pred EEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 163 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 163 vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
+|+|||+++ .+|||++| ||+. |+|+.|+.++|.+||+.++.......++ .+..++..+.+|.
T Consensus 290 vIaATNrpd-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv-----dl~~lA~~t~G~S----- 354 (405)
T 4b4t_J 290 IIMATNRLD-----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI-----NLRKVAEKMNGCS----- 354 (405)
T ss_dssp EEEEESCSS-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC-----CHHHHHHHCCSCC-----
T ss_pred EEeccCChh-----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC-----CHHHHHHHCCCCC-----
Confidence 999999999 99999999 9996 9999999999999999888765433222 3667777776654
Q ss_pred chhhhhHHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKIK 255 (938)
Q Consensus 240 p~~a~~ll~~a~~~~~ 255 (938)
+++...++.+|+..+.
T Consensus 355 GADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 355 GADVKGVCTEAGMYAL 370 (405)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777777765543
No 11
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.91 E-value=8.7e-25 Score=244.88 Aligned_cols=256 Identities=21% Similarity=0.359 Sum_probs=178.9
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhh----hcCCCC--CCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEe
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRS----RSGLSD--AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 491 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~----~~~~~~--~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~ 491 (938)
+.++.+.|.+.|+||+.+++.+..++... ..+... ...+..++||+||||||||++|++||+.+ +.+++.+
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~ 82 (363)
T 3hws_A 6 PHEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMA 82 (363)
T ss_dssp HHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEE
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEe
Confidence 34567778888999999999999888422 222111 11234589999999999999999999998 7899999
Q ss_pred ccccccchhhhhhhcCCCCCCccccccchhHHHHH-------hCCCEEEEEccccccCHH--------------HHHHHH
Q psy14500 492 DMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKANSD--------------VFNILL 550 (938)
Q Consensus 492 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~lDEid~~~~~--------------~~~~Ll 550 (938)
+|+.+.. .+|.|....+.+...+. .++++||||||||++++. +|+.|+
T Consensus 83 ~~~~l~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll 151 (363)
T 3hws_A 83 DATTLTE-----------AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALL 151 (363)
T ss_dssp EHHHHTT-----------CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHH
T ss_pred chHHhcc-----------cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHH
Confidence 9987543 22445443344444433 345689999999999876 999999
Q ss_pred HhhcCCce---ecCCCceeec--------CCeEEEEecCC-Cchhhhhhh-c-----------------chHHHHHHHH-
Q psy14500 551 QILDDGRL---TDNRGRTINF--------RNTIIVMTSNL-GSDKIKEME-K-----------------GDKEIIKLAV- 599 (938)
Q Consensus 551 ~~le~g~~---~~~~g~~~~~--------~~~iiI~ttn~-~~~~~~~~~-~-----------------~~~~~~~~~~- 599 (938)
++|+ |.. .+..|+..++ ++.+||+++|. +.+.+.+.. . .....+...+
T Consensus 152 ~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~ 230 (363)
T 3hws_A 152 KLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVE 230 (363)
T ss_dssp HHHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCC
T ss_pred HHhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCC
Confidence 9999 553 2334444444 45555555554 444332210 0 0011111111
Q ss_pred -HHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHH----HHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccc
Q psy14500 600 -MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI----QLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARD 674 (938)
Q Consensus 600 -~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~----~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~d 674 (938)
.+.....|+|+|++||+.++.|.|++++++.+|+.. .+.++...+...++.+.++++++++|++.+|+|++|+|.
T Consensus 231 ~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~ 310 (363)
T 3hws_A 231 PEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARG 310 (363)
T ss_dssp HHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTT
T ss_pred HHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchH
Confidence 122344599999999999999999999999999997 778888888877888999999999999999999999999
Q ss_pred cccchHHHHHHHHHhcc
Q psy14500 675 VHGCKKSLSILLKKIHK 691 (938)
Q Consensus 675 l~~~~~~l~~~l~~~~~ 691 (938)
|++. +++++...-+
T Consensus 311 L~~~---ie~~~~~~l~ 324 (363)
T 3hws_A 311 LRSI---VEAALLDTMY 324 (363)
T ss_dssp HHHH---HHHHHHHHHH
T ss_pred HHHH---HHHHHHHHHH
Confidence 9999 8888755443
No 12
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=2.3e-23 Score=228.83 Aligned_cols=202 Identities=23% Similarity=0.296 Sum_probs=160.6
Q ss_pred hcCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
..-+|++|.|.+++++.|.+.+. ...+.++|||||||||||++|+++|.++ +.+++.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~ 246 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLR 246 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEE
Confidence 34589999999998888877542 3566889999999999999999999999 899999
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC---ccchhh---hhhhhc----cCCceE
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDAGN---MLKPEL----SRGELH 162 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~---~L~~~l----~~~~i~ 162 (938)
++.+.+. ++|.|+.+..++.+|..+... .|+||||||+|.+++.+...+ +..... .|+..+ ..++++
T Consensus 247 v~~s~l~--sk~vGesek~ir~lF~~Ar~~-aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~Vi 323 (437)
T 4b4t_I 247 IVGSELI--QKYLGDGPRLCRQIFKVAGEN-APSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVK 323 (437)
T ss_dssp EESGGGC--CSSSSHHHHHHHHHHHHHHHT-CSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEE
T ss_pred EEHHHhh--hccCchHHHHHHHHHHHHHhc-CCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEE
Confidence 9999988 679999999999999999854 599999999999998764332 222333 333333 346799
Q ss_pred EEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 163 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 163 vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
+|+|||.++ .+|+||+| ||+. |+|+.|+.++|.+||+.++.......++ .+..++..+.+|.
T Consensus 324 VIaATNrpd-----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv-----dl~~LA~~T~GfS----- 388 (437)
T 4b4t_I 324 VIMATNKIE-----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV-----NLETLVTTKDDLS----- 388 (437)
T ss_dssp EEEEESCST-----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC-----CHHHHHHHCCSCC-----
T ss_pred EEEeCCChh-----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC-----CHHHHHHhCCCCC-----
Confidence 999999999 99999999 9996 9999999999999999888765433222 3567777766654
Q ss_pred chhhhhHHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKIK 255 (938)
Q Consensus 240 p~~a~~ll~~a~~~~~ 255 (938)
+++...++.+|+..+.
T Consensus 389 GADI~~l~~eA~~~Ai 404 (437)
T 4b4t_I 389 GADIQAMCTEAGLLAL 404 (437)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6677777777765543
No 13
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=9.2e-23 Score=226.43 Aligned_cols=200 Identities=25% Similarity=0.305 Sum_probs=160.0
Q ss_pred CCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
-+|++|.|.+++++.|.+.+. -..+.+||||||||||||++|+++|.++ +.+++.++
T Consensus 206 vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~vs 275 (467)
T 4b4t_H 206 VTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRVI 275 (467)
T ss_dssp CCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEEE
T ss_pred CCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEEE
Confidence 489999999999888876432 3567899999999999999999999999 89999999
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cch---hhhhhhhc----cCCceEEE
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDA---GNMLKPEL----SRGELHCI 164 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~---~~~L~~~l----~~~~i~vI 164 (938)
.+.+. ++|.|+.+..++.+|..+... .|+||||||+|.++..+...++ ... .+.++..| ..+.+++|
T Consensus 276 ~s~L~--sk~vGesek~ir~lF~~Ar~~-aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVI 352 (467)
T 4b4t_H 276 GSELV--QKYVGEGARMVRELFEMARTK-KACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVM 352 (467)
T ss_dssp GGGGC--CCSSSHHHHHHHHHHHHHHHT-CSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEE
T ss_pred hHHhh--cccCCHHHHHHHHHHHHHHhc-CCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEE
Confidence 99988 679999999999999999854 5999999999999987654332 112 22333333 35689999
Q ss_pred EecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCch
Q psy14500 165 GATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 241 (938)
Q Consensus 165 ~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 241 (938)
+|||+++ .+|++++| ||+. |+|+.|+.++|.+||+.++.......++ .+..++..+.+|. ++
T Consensus 353 aATNrpd-----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv-----dl~~LA~~T~GfS-----GA 417 (467)
T 4b4t_H 353 FATNRPN-----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI-----RWELISRLCPNST-----GA 417 (467)
T ss_dssp EECSCTT-----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC-----CHHHHHHHCCSCC-----HH
T ss_pred eCCCCcc-----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHCCCCC-----HH
Confidence 9999998 89999999 9996 9999999999999999888765433333 2566777776654 66
Q ss_pred hhhhHHHHHHHHHH
Q psy14500 242 KAIDLIDEAAAKIK 255 (938)
Q Consensus 242 ~a~~ll~~a~~~~~ 255 (938)
+...++.+|+..+.
T Consensus 418 DI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 418 ELRSVCTEAGMFAI 431 (467)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 67777777765543
No 14
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=5.3e-23 Score=229.84 Aligned_cols=201 Identities=20% Similarity=0.237 Sum_probs=160.3
Q ss_pred hcCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
+.-+|++|.|.+++++.|...+. ...+.++|||||||||||++|+++|.++ +.+++.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~ 245 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT----------NATFLK 245 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEE
Confidence 44589999999999888876432 3567889999999999999999999999 899999
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cch---hhhhhhhcc----CCceE
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDA---GNMLKPELS----RGELH 162 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~---~~~L~~~l~----~~~i~ 162 (938)
++.+.+. ++|.|+.+..++.+|..+.... |+||||||+|.+++.+....+ ... .+.|+..|+ ..+++
T Consensus 246 v~~s~l~--~~~vGese~~ir~lF~~A~~~a-P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 246 LAAPQLV--QMYIGEGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp EEGGGGC--SSCSSHHHHHHHHHHHHHHHHC-SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSE
T ss_pred Eehhhhh--hcccchHHHHHHHHHHHHHhcC-CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEE
Confidence 9999988 6799999999999999998554 999999999999987643322 122 233444442 45789
Q ss_pred EEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 163 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 163 vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
||+|||+++ .+||+++| ||+. |+|+.|+.++|.+||+.++.......++ .+..++..+.+|.
T Consensus 323 VIaaTNrp~-----~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv-----dl~~lA~~t~G~s----- 387 (434)
T 4b4t_M 323 VLAATNRVD-----VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI-----NWQELARSTDEFN----- 387 (434)
T ss_dssp EEEECSSCC-----CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC-----CHHHHHHHCSSCC-----
T ss_pred EEEeCCCch-----hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC-----CHHHHHHhCCCCC-----
Confidence 999999998 89999998 9996 9999999999999999888775443333 2566777766654
Q ss_pred chhhhhHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKI 254 (938)
Q Consensus 240 p~~a~~ll~~a~~~~ 254 (938)
+++...++.+|+..+
T Consensus 388 GADi~~l~~eA~~~a 402 (434)
T 4b4t_M 388 GAQLKAVTVEAGMIA 402 (434)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 666777777776544
No 15
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.90 E-value=1.1e-22 Score=227.56 Aligned_cols=201 Identities=21% Similarity=0.290 Sum_probs=159.5
Q ss_pred cCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 27 LGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 27 ~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
.-+|++|.|.+++++.|...+. ...+.++|||||||||||++|+++|.++ +++++.+
T Consensus 177 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~v 246 (437)
T 4b4t_L 177 EITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIFS 246 (437)
T ss_dssp SSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEE
Confidence 3489999999998888777543 3567899999999999999999999999 8999999
Q ss_pred ehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cc---hhhhhhhhcc----CCceEE
Q psy14500 94 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---ID---AGNMLKPELS----RGELHC 163 (938)
Q Consensus 94 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~---~~~~L~~~l~----~~~i~v 163 (938)
+.+.+. ++|.|+.+..++.+|..+... .|+||||||+|.+++.+...+. .. ..+.|+..|+ .+.++|
T Consensus 247 ~~s~l~--sk~~Gese~~ir~~F~~A~~~-~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~viv 323 (437)
T 4b4t_L 247 PASGIV--DKYIGESARIIREMFAYAKEH-EPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKI 323 (437)
T ss_dssp EGGGTC--CSSSSHHHHHHHHHHHHHHHS-CSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEE
T ss_pred ehhhhc--cccchHHHHHHHHHHHHHHhc-CCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEE
Confidence 999988 679999999999999999854 5999999999999987644332 12 2334444442 457899
Q ss_pred EEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCc
Q psy14500 164 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 240 (938)
Q Consensus 164 I~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 240 (938)
|+|||.++ .+||+|+| ||+. |+|+.|+.++|..||+.++.......++ .+..++..+.+|. +
T Consensus 324 I~ATNrp~-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~-----dl~~lA~~t~G~s-----G 388 (437)
T 4b4t_L 324 IMATNRPD-----TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF-----DFEAAVKMSDGFN-----G 388 (437)
T ss_dssp EEEESSTT-----SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC-----CHHHHHHTCCSCC-----H
T ss_pred EEecCCch-----hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc-----CHHHHHHhCCCCC-----H
Confidence 99999998 89999998 6986 9999999999999999888765433222 3567777766654 6
Q ss_pred hhhhhHHHHHHHHHH
Q psy14500 241 DKAIDLIDEAAAKIK 255 (938)
Q Consensus 241 ~~a~~ll~~a~~~~~ 255 (938)
++...++.+|+..+.
T Consensus 389 ADi~~l~~eA~~~ai 403 (437)
T 4b4t_L 389 ADIRNCATEAGFFAI 403 (437)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 667777777765543
No 16
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.90 E-value=5.3e-23 Score=208.33 Aligned_cols=194 Identities=72% Similarity=1.189 Sum_probs=166.2
Q ss_pred hhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14500 10 HIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 89 (938)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~ 89 (938)
+.++|++++.+|.++++|..|++++|++++++++...+......+++|+||||||||++|+++++.+.....+....+.+
T Consensus 1 ~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 80 (195)
T 1jbk_A 1 HMQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRR 80 (195)
T ss_dssp CCHHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCE
T ss_pred CchHHHHHhHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCc
Confidence 35789999999999999999999999999999999999888788999999999999999999999987766666666788
Q ss_pred EEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecCh
Q psy14500 90 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTL 169 (938)
Q Consensus 90 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~ 169 (938)
++.+++..+..+..+.+.....+..++..+....++.||||||+|.+.+........++.+.|+..++.+.+.+|++||.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~ 160 (195)
T 1jbk_A 81 VLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTL 160 (195)
T ss_dssp EEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECH
T ss_pred EEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCH
Confidence 99999988876666777788888888888876677889999999999766544445667788888889899999999999
Q ss_pred hHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHH
Q psy14500 170 NEYRQYIEKDAAFERRFQKILVEEPDIEETISIL 203 (938)
Q Consensus 170 ~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il 203 (938)
.++.....+++++.+||..+.|++|+.+++.+|+
T Consensus 161 ~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 161 DEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 8877777889999999999999999999998775
No 17
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.89 E-value=4.9e-22 Score=222.02 Aligned_cols=201 Identities=19% Similarity=0.203 Sum_probs=159.3
Q ss_pred cCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 27 LGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 27 ~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
.-+|+++.|.+++++.|...+. ...+.++|||||||||||++|+++|+.+ +.+++.+
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~v 237 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIRV 237 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEEE
Confidence 3489999999999888877543 3566789999999999999999999999 8999999
Q ss_pred ehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC---ccc---hhhhhhhhc----cCCceEE
Q psy14500 94 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SID---AGNMLKPEL----SRGELHC 163 (938)
Q Consensus 94 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~---~~~~L~~~l----~~~~i~v 163 (938)
+.+.+. ++|.|+.+..++.+|..+... .|+|+||||+|.++..+.... +.. +.+.|+..+ ...++++
T Consensus 238 ~~~~l~--~~~~Ge~e~~ir~lF~~A~~~-aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~v 314 (428)
T 4b4t_K 238 NGSEFV--HKYLGEGPRMVRDVFRLAREN-APSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKV 314 (428)
T ss_dssp EGGGTC--CSSCSHHHHHHHHHHHHHHHT-CSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEE
T ss_pred ecchhh--ccccchhHHHHHHHHHHHHHc-CCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEE
Confidence 999888 678999999999999999854 599999999999998764322 212 233444444 3567999
Q ss_pred EEecChhHHHHhhhcCHHHHc--ccce-EEee-CCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 164 IGATTLNEYRQYIEKDAAFER--RFQK-ILVE-EPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 164 I~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~-~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
|+|||.++ .+||+++| ||+. |+|| .|+.++|..||+.++.......++ .+..++..+.+|.
T Consensus 315 I~aTN~~~-----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~~-----dl~~lA~~t~G~s----- 379 (428)
T 4b4t_K 315 IMATNRAD-----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPEA-----DLDSLIIRNDSLS----- 379 (428)
T ss_dssp EEEESCSS-----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTTC-----CHHHHHHHTTTCC-----
T ss_pred EEecCChh-----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCccc-----CHHHHHHHCCCCC-----
Confidence 99999998 89999999 9996 9996 799999999999888764332222 3677778776654
Q ss_pred chhhhhHHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKIK 255 (938)
Q Consensus 240 p~~a~~ll~~a~~~~~ 255 (938)
+++...++.+|+..+.
T Consensus 380 gadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 380 GAVIAAIMQEAGLRAV 395 (428)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6667777777765543
No 18
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=99.88 E-value=6.7e-23 Score=225.48 Aligned_cols=226 Identities=22% Similarity=0.358 Sum_probs=150.5
Q ss_pred ccccccccccchHHHHHHHHHhcccC-------CccccccccccCCCCeeEehhHHHHHhcC-------CccEEEcCCCh
Q psy14500 668 LIYGARDVHGCKKSLSILLKKIHKKS-------PEANFIFLGDLINKGPQSLDTLRMVYSMR-------NYAKIVLGNHE 733 (938)
Q Consensus 668 ~~~~~~dl~~~~~~l~~~l~~~~~~~-------~~~~li~~GD~~drg~~~~~v~~~~~~~~-------~~~~~v~GNHe 733 (938)
+.+.++||||+++++.++++.+++.+ ..+.++|+||++|||+.+.+|+++++.+. ..+++|+||||
T Consensus 72 ~i~vigDiHG~~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~evl~~l~~l~~~~~~~~~~v~~v~GNHE 151 (342)
T 2z72_A 72 KVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHE 151 (342)
T ss_dssp EEEEECCCTTCHHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHHHHHHHHHHHHHHHHTTCEEEECCCHHH
T ss_pred CEEEEECCCCCHHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEecCCc
Confidence 45789999999999999999887643 35889999999999999999999998863 46899999999
Q ss_pred HHHHHHHhccccCCccccHHHhhCC------CCHHHHHHHHhcCCceEEeCCEEEEecccCcCC-----CHHHHHHHhHH
Q psy14500 734 IHLLDVLININKKSKLDTFDDILDA------PDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQW-----TAQQTIKLSHQ 802 (938)
Q Consensus 734 ~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~lp~~~~~~~~~~vHAg~~p~~-----~~~~~~~~~~~ 802 (938)
.+++...... .......+.+.+.. ....++.+||+++|+++..++++|||||++|.+ +.++...+.+.
T Consensus 152 ~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~lP~~~~~~~~~~vHgGl~p~~~~~~~~l~~i~~~~r~ 230 (342)
T 2z72_A 152 QMVLGGDLRY-VHQRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISRELTLDKANALYRA 230 (342)
T ss_dssp HHHHHTCCTT-SCTTHHHHHHHTTSCGGGGGSTTBHHHHHHHTCCSEEEETTEEEESSCCCHHHHHTTCCHHHHHHHHHH
T ss_pred HHHhhCcccc-cccccchHHHHhcccHHHHHHHhHHHHHHHhhCCeEEEECCEEEEECCCChhhcccCCCHHHHHHHhhh
Confidence 9988631100 00011111111111 012478999999999999999999999999976 55544333332
Q ss_pred H----HHHhhhccHHHHHHHhcCCCCCCCCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCC
Q psy14500 803 V----EKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYI 878 (938)
Q Consensus 803 ~----~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~ 878 (938)
. .+.+.. ..+..-+|.+.+..|.++..... -+.+.. .+|+
T Consensus 231 ~~~~~~~~~~~---~~~~~~lwsd~~~~w~R~~~~~~-fg~~~~---------~~fl----------------------- 274 (342)
T 2z72_A 231 NVDASKKSLKA---DDLLNFLFFGNGPTWYRGYFSET-FTEAEL---------DTIL----------------------- 274 (342)
T ss_dssp HTTSCHHHHHH---SHHHHHHHSTTSTTTCCGGGSTT-CCHHHH---------HHHH-----------------------
T ss_pred hcccccccccc---CHHHHhccCCCCCCCcCCccccc-CChHHH---------HHHH-----------------------
Confidence 1 111111 11123345555556765430000 000000 0000
Q ss_pred CcccCCCCcCCCceEEEccCCCcCcc--cCCCeEEeccccccCCeEEEEEecCCcEEEeeC
Q psy14500 879 PWFDLPNRKTIDITVLFGHWSTLGLI--MKPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 937 (938)
Q Consensus 879 ~w~~~~~~~~~~~~vv~GH~~~~~~~--~~~~~~~lDtG~~~gg~Lta~~l~~~~~~~v~~ 937 (938)
+| .+...||+|||+..+.. ..++++.|||||+|||+|+++++++++++++.+
T Consensus 275 ~~-------~~~~~IV~GHt~~~~~~~~~~~~~i~Idsg~~~gg~la~l~i~~~~~~~v~~ 328 (342)
T 2z72_A 275 QH-------FNVNHIVVGHTSQERVLGLFHNKVIAVDSSIKVGKSGELLLLENNRLIRGLY 328 (342)
T ss_dssp HH-------HTCSEEEECSSCCSSCEEETTTTEEECCCCGGGSSCCCEEEEETTEEEEECT
T ss_pred HH-------CCCcEEEECCCcccchhhhcCCCEEEEECCCCCCCcEEEEEEECCEEEEEec
Confidence 01 12468999999998743 457899999999999999999999999998863
No 19
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.88 E-value=3e-22 Score=201.67 Aligned_cols=186 Identities=64% Similarity=1.090 Sum_probs=159.6
Q ss_pred hhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14500 10 HIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 89 (938)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~ 89 (938)
++++|++++.+|.++++|..|++++|++.+++.+...+......++||+||||||||++|+++++.+.....|....+..
T Consensus 1 ~~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~ 80 (187)
T 2p65_A 1 GYQALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRK 80 (187)
T ss_dssp --CCTTTTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCE
T ss_pred CchHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCe
Confidence 35678999999999999999999999999999999999888888999999999999999999999987766666666888
Q ss_pred EEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCC-CCCccchhhhhhhhccCCceEEEEecC
Q psy14500 90 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK-VEGSIDAGNMLKPELSRGELHCIGATT 168 (938)
Q Consensus 90 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~-~~~~~~~~~~L~~~l~~~~i~vI~~tn 168 (938)
++.+++..+..+..+.+.....+..++..+...+++.+|||||+|.+.+.+. .....++.+.|+..++.+.+.+|++||
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~ 160 (187)
T 2p65_A 81 LVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATT 160 (187)
T ss_dssp EEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEEC
T ss_pred EEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecC
Confidence 9999988877656667777778888888887766788999999999976544 333456778888888999999999999
Q ss_pred hhHHHHhhhcCHHHHcccceEEeeCCC
Q psy14500 169 LNEYRQYIEKDAAFERRFQKILVEEPD 195 (938)
Q Consensus 169 ~~~~~~~~~ld~al~~Rf~~i~~~~p~ 195 (938)
.+++.....+++++.+||..+.++.|+
T Consensus 161 ~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 161 VSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 998766667899999999999999885
No 20
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.87 E-value=7.6e-22 Score=222.18 Aligned_cols=254 Identities=22% Similarity=0.372 Sum_probs=170.1
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHH----HhhhcCC-------C----------CCCCCceEEEEeCCCCCcHHHHHHH
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAI----RRSRSGL-------S----------DAKRPYGSFMFLGPTGVGKTELCKT 476 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l----~~~~~~~-------~----------~~~~~~~~iLl~GppGtGKT~lA~~ 476 (938)
+.++.+.|.+.|+||+.+++.+..++ .+.+.+. . ....+..++||+||||||||++|++
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHH
Confidence 45678889999999999999999888 3322211 0 0112334799999999999999999
Q ss_pred HHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHH-------HhCCCEEEEEccccccCHH-----
Q psy14500 477 LSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV-------RRKPYSLILLDEIEKANSD----- 544 (938)
Q Consensus 477 la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~-------~~~~~~vl~lDEid~~~~~----- 544 (938)
+|+.+ +.+++.++|..+.. .+|.|....+.+...+ ..+.++||||||++++++.
T Consensus 92 la~~l---~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~ 157 (376)
T 1um8_A 92 LAKHL---DIPIAISDATSLTE-----------AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS 157 (376)
T ss_dssp HHHHT---TCCEEEEEGGGCC-------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------
T ss_pred HHHHh---CCCEEEecchhhhh-----------cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc
Confidence 99998 77899999887643 2345554444444433 2346799999999999988
Q ss_pred ---------HHHHHHHhhcCCce--ecCCCce--------eecCCeEEEEecCCCc-hh-hhhhh-----c--ch-----
Q psy14500 545 ---------VFNILLQILDDGRL--TDNRGRT--------INFRNTIIVMTSNLGS-DK-IKEME-----K--GD----- 591 (938)
Q Consensus 545 ---------~~~~Ll~~le~g~~--~~~~g~~--------~~~~~~iiI~ttn~~~-~~-~~~~~-----~--~~----- 591 (938)
+++.|+++|+++.+ .+.+++. +...+.++|+|+|... +. +.+.+ + .+
T Consensus 158 ~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~ 237 (376)
T 1um8_A 158 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKK 237 (376)
T ss_dssp ------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTT
T ss_pred eecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhcc
Confidence 99999999997754 3333333 3446667777776311 10 00000 0 00
Q ss_pred -HHHH-HHHHH-HHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH----HHHHHHHHHHHccCCeEEEcHHHHHHHHhh
Q psy14500 592 -KEII-KLAVM-NEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNI 664 (938)
Q Consensus 592 -~~~~-~~~~~-~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 664 (938)
...+ ..... ......|.|+|++||+.++.|+|++.+++..|+. ..+.++...+...+..+.++++++++|+..
T Consensus 238 ~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 317 (376)
T 1um8_A 238 EQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQL 317 (376)
T ss_dssp TTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred chhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHH
Confidence 0000 00000 1124468999999999999999999999999998 466667777766777899999999999998
Q ss_pred cccccccccccccchHHHHHHHHH
Q psy14500 665 GFDLIYGARDVHGCKKSLSILLKK 688 (938)
Q Consensus 665 ~~~~~~~~~dl~~~~~~l~~~l~~ 688 (938)
+|++.+|+|.+.+. +++++..
T Consensus 318 ~~~~~~~~R~L~~~---le~~~~~ 338 (376)
T 1um8_A 318 ALERKTGARGLRAI---IEDFCLD 338 (376)
T ss_dssp HHHTTCTGGGHHHH---HHHHHHH
T ss_pred hcccccCcHHHHHH---HHHHHHH
Confidence 88888999999998 7777754
No 21
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.87 E-value=1.1e-21 Score=213.01 Aligned_cols=227 Identities=16% Similarity=0.227 Sum_probs=177.5
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++|++.++..+...+..... ...++||+||||||||++|++|++.+...+.+|+.++|+.+......+.+|
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~-------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP-------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS-------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhC-------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhc
Confidence 4689999999999998886541 123799999999999999999999887778899999999988776677899
Q ss_pred CCCCCC-ccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 507 GAPPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 507 g~~~~~-~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
|+..|. .|.... ....+..+.+++||||||+.+++..|..|+.+|+++.+...++......++.+|+|||.+.....
T Consensus 75 g~~~g~~tg~~~~--~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v 152 (304)
T 1ojl_A 75 GHEKGAFTGADKR--REGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEV 152 (304)
T ss_dssp CCCSSCCC---CC--CCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHH
T ss_pred CccccccCchhhh--hcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHH
Confidence 987653 333221 22344455678999999999999999999999999988766555455677899999998654332
Q ss_pred hhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCC--HHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHH
Q psy14500 586 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN--RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 662 (938)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~--~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 662 (938)
. ...|+++|++|++. .|.++|+. .+++..++..++..+........ ..+++++++.|.
T Consensus 153 ~-----------------~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~--~~~s~~a~~~L~ 213 (304)
T 1ojl_A 153 S-----------------AGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVV--KGFTPQAMDLLI 213 (304)
T ss_dssp H-----------------HTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCC--CCBCHHHHHHHH
T ss_pred H-----------------hCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCc--cCCCHHHHHHHH
Confidence 2 45799999999964 58899998 58999999988887766554322 568999999998
Q ss_pred hhcccccccccccccchHHHHHHH
Q psy14500 663 NIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 663 ~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
. |.|+.++|.+.++ +++++
T Consensus 214 ~--~~wpGnvReL~~~---l~~~~ 232 (304)
T 1ojl_A 214 H--YDWPGNIRELENA---IERAV 232 (304)
T ss_dssp H--CCCSSHHHHHHHH---HHHHH
T ss_pred c--CCCCCCHHHHHHH---HHHHH
Confidence 8 6677888888888 66665
No 22
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.86 E-value=6.2e-21 Score=212.00 Aligned_cols=217 Identities=19% Similarity=0.279 Sum_probs=155.7
Q ss_pred hhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 10 HIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 10 ~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
...........+..++++.+|++++|++.+++.|...+. ...+.++||+||||||||++|+++|+.+
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~- 108 (355)
T 2qp9_X 30 NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA- 108 (355)
T ss_dssp -----------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH-
T ss_pred HHHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-
Confidence 333444455566777888999999999999999888663 2345689999999999999999999999
Q ss_pred cCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cchhhhhhh
Q psy14500 78 NGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKP 154 (938)
Q Consensus 78 ~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~ 154 (938)
+.+++.+++..+. ..+.|+.+..++.+|..+.. ..++||||||+|.+.+.+..... ..+.+.|+.
T Consensus 109 ---------~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~ 176 (355)
T 2qp9_X 109 ---------NSTFFSVSSSDLV--SKWMGESEKLVKQLFAMARE-NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLV 176 (355)
T ss_dssp ---------TCEEEEEEHHHHH--SCC---CHHHHHHHHHHHHH-TSSEEEEEECGGGGTC------CTHHHHHHHHHHH
T ss_pred ---------CCCEEEeeHHHHh--hhhcchHHHHHHHHHHHHHH-cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHH
Confidence 7899999998887 45778888889999988874 45889999999999875432211 223445555
Q ss_pred hcc-----CCceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHH
Q psy14500 155 ELS-----RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASE 228 (938)
Q Consensus 155 ~l~-----~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~ 228 (938)
.++ ...+++|++||.++ .+++++++||+. +.++.|+.++|..||+.++.. .+..+++..+..++.
T Consensus 177 ~l~~~~~~~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~~~~~~l~~la~ 247 (355)
T 2qp9_X 177 QMNGVGNDSQGVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPSVLTKEDYRTLGA 247 (355)
T ss_dssp HHHHCC---CCEEEEEEESCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----SCBCCCHHHHHHHHH
T ss_pred HhhcccccCCCeEEEeecCCcc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh----CCCCCCHHHHHHHHH
Confidence 553 46799999999998 899999999975 999999999999999988765 345578899999999
Q ss_pred hhhhccccCCCchhhhhHHHHHHHH
Q psy14500 229 LSYRYISDRFMPDKAIDLIDEAAAK 253 (938)
Q Consensus 229 ~s~~~~~~~~~p~~a~~ll~~a~~~ 253 (938)
.+.+|. ++....+++.|+..
T Consensus 248 ~t~G~s-----g~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 248 MTEGYS-----GSDIAVVVKDALMQ 267 (355)
T ss_dssp HTTTCC-----HHHHHHHHHHHHHH
T ss_pred HcCCCC-----HHHHHHHHHHHHHH
Confidence 987765 55666677666543
No 23
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.86 E-value=7.4e-21 Score=209.05 Aligned_cols=203 Identities=21% Similarity=0.311 Sum_probs=161.3
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14500 22 TEKARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 89 (938)
Q Consensus 22 ~~~~~~~~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~ 89 (938)
..++++-+|++++|++++++.+...+. ..++.++||+||||||||++|+++|+.+ +.+
T Consensus 9 ~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~~ 78 (322)
T 3eie_A 9 LSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NST 78 (322)
T ss_dssp EEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH----------TCE
T ss_pred eecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH----------CCC
Confidence 445677789999999999999988762 2335679999999999999999999998 789
Q ss_pred EEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC---Cccchhhhhhhhc-----cCCce
Q psy14500 90 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSIDAGNMLKPEL-----SRGEL 161 (938)
Q Consensus 90 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~~~~~L~~~l-----~~~~i 161 (938)
++.++++.+. ..+.|+.+..++.+|..+... .|+||||||+|.|.+.+... ....+.+.|+..+ ....+
T Consensus 79 ~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v 155 (322)
T 3eie_A 79 FFSVSSSDLV--SKWMGESEKLVKQLFAMAREN-KPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQGV 155 (322)
T ss_dssp EEEEEHHHHH--TTTGGGHHHHHHHHHHHHHHT-SSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCCE
T ss_pred EEEEchHHHh--hcccchHHHHHHHHHHHHHhc-CCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCce
Confidence 9999998887 567899999999999998854 48899999999998755322 1223344454444 34679
Q ss_pred EEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCc
Q psy14500 162 HCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 240 (938)
Q Consensus 162 ~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 240 (938)
++|++||.++ .+++++++||.. +.++.|+.++|..|++.++.. .+..+++..+..++..+.+|. +
T Consensus 156 ~vi~atn~~~-----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~l~~la~~t~g~s-----g 221 (322)
T 3eie_A 156 LVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPCVLTKEDYRTLGAMTEGYS-----G 221 (322)
T ss_dssp EEEEEESCGG-----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT----CCCCCCHHHHHHHHHTTTTCC-----H
T ss_pred EEEEecCChh-----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc----CCCCCCHHHHHHHHHHcCCCC-----H
Confidence 9999999998 899999999985 999999999999999987764 455678999999999887765 4
Q ss_pred hhhhhHHHHHH
Q psy14500 241 DKAIDLIDEAA 251 (938)
Q Consensus 241 ~~a~~ll~~a~ 251 (938)
+....++..+.
T Consensus 222 ~di~~l~~~a~ 232 (322)
T 3eie_A 222 SDIAVVVKDAL 232 (322)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 55555655554
No 24
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=1.6e-20 Score=205.74 Aligned_cols=233 Identities=22% Similarity=0.390 Sum_probs=171.9
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhhh--cCCCC---CCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRSR--SGLSD---AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 492 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~~--~~~~~---~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 492 (938)
+.++...+.+.++||+.+++.+..++.... .+... +..+..++||+||||||||++|+++|+.+ +.+++.++
T Consensus 6 ~~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~ 82 (310)
T 1ofh_A 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (310)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEE
T ss_pred HHHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEc
Confidence 346677888999999999999999887521 11110 01122479999999999999999999998 67899999
Q ss_pred cccccchhhhhhhcCCCCCCccccccchhHHHHHh--------CCCEEEEEccccccCHHH------------HHHHHHh
Q psy14500 493 MSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR--------KPYSLILLDEIEKANSDV------------FNILLQI 552 (938)
Q Consensus 493 ~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~--------~~~~vl~lDEid~~~~~~------------~~~Ll~~ 552 (938)
|+.+... +|+|.+....+...+.. .+++||||||+|++++.. ++.|+++
T Consensus 83 ~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~ 151 (310)
T 1ofh_A 83 ATKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPL 151 (310)
T ss_dssp GGGGSSC-----------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHH
T ss_pred chhcccC-----------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHH
Confidence 9876531 35554443333333321 236899999999998764 9999999
Q ss_pred hcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHH
Q psy14500 553 LDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSI 632 (938)
Q Consensus 553 le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i 632 (938)
|+++.+....+ .....++++|+++|..... ...+.++|++||+.++.|+|++.+++.+|
T Consensus 152 le~~~~~~~~~-~~~~~~~~~i~~~~~~~~~--------------------~~~l~~~l~~R~~~~i~~~~~~~~~~~~i 210 (310)
T 1ofh_A 152 VEGSTVSTKHG-MVKTDHILFIASGAFQVAR--------------------PSDLIPELQGRLPIRVELTALSAADFERI 210 (310)
T ss_dssp HHCCEEEETTE-EEECTTCEEEEEECCSSSC--------------------GGGSCHHHHHTCCEEEECCCCCHHHHHHH
T ss_pred hcCCeEecccc-cccCCcEEEEEcCCcccCC--------------------cccCCHHHHhhCCceEEcCCcCHHHHHHH
Confidence 99877665444 4566778899987643221 12478999999998899999999999999
Q ss_pred HH----HHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccc-----cccccccccchHHHHHHHHH
Q psy14500 633 AN----IQLNILKNKLLKMNMDLKISKAALKKISNIGFDL-----IYGARDVHGCKKSLSILLKK 688 (938)
Q Consensus 633 ~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~-----~~~~~dl~~~~~~l~~~l~~ 688 (938)
+. ..+..+...+...+..+.++++++++|++..|.. .+++|.+.+. +++++..
T Consensus 211 l~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~---l~~~~~~ 272 (310)
T 1ofh_A 211 LTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTV---MERLMDK 272 (310)
T ss_dssp HHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHH---HHHHSHH
T ss_pred HHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHH---HHHHHHh
Confidence 98 5556666666667778899999999999977643 4667777766 6666643
No 25
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.85 E-value=3.1e-20 Score=207.79 Aligned_cols=249 Identities=21% Similarity=0.322 Sum_probs=175.9
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhh----hcCCC-CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRS----RSGLS-DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 492 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~----~~~~~-~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 492 (938)
..++.+.|.+.|+||+++++.+..++... ..... ....+..++||+||||||||++|+++|..+ +.+++.++
T Consensus 6 P~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~ 82 (444)
T 1g41_A 6 PREIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 82 (444)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc---CCCceeec
Confidence 34577889999999999999998888432 11100 111233479999999999999999999999 77999999
Q ss_pred cccccch-----h---hhhhhcCC--------------------------------CCCC--------------------
Q psy14500 493 MSEFIEK-----H---SISRLIGA--------------------------------PPGY-------------------- 512 (938)
Q Consensus 493 ~~~~~~~-----~---~~~~l~g~--------------------------------~~~~-------------------- 512 (938)
++.+... . .+..++.. -.|.
T Consensus 83 ~~~~~~~g~vG~d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~a 162 (444)
T 1g41_A 83 ATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKK 162 (444)
T ss_dssp GGGGC----CCCCTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------
T ss_pred chhhcccceeeccHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHH
Confidence 8766542 0 01111000 0000
Q ss_pred ----------------------------ccccc------------------------------------------cchhH
Q psy14500 513 ----------------------------IGYEE------------------------------------------GGYLT 522 (938)
Q Consensus 513 ----------------------------~g~~~------------------------------------------~~~l~ 522 (938)
.|..+ .....
T Consensus 163 L~rggr~D~~i~i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~ 242 (444)
T 1g41_A 163 LREGQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQ 242 (444)
T ss_dssp ---------------------------------------------------------------CCGGGSCSSCCHHHHHH
T ss_pred HHcCCCcceEEEEcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHH
Confidence 00000 00011
Q ss_pred HHHHhC-CCEEEEEccccccCH------------HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhc
Q psy14500 523 EIVRRK-PYSLILLDEIEKANS------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 589 (938)
Q Consensus 523 ~~~~~~-~~~vl~lDEid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~ 589 (938)
++++.+ +++||++|||||+.. .+|++||++||........ ..++.++++||+|..+.....
T Consensus 243 ~ai~~ae~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~-~~~d~~~ilfI~~gaf~~~~~----- 316 (444)
T 1g41_A 243 KAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH-GMVKTDHILFIASGAFQVARP----- 316 (444)
T ss_dssp HHHHHHHHHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETT-EEEECTTCEEEEEECCSSCCG-----
T ss_pred HHHHHhccCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccccc-ceecCCcEEEEeccccccCCh-----
Confidence 222333 568999999999864 3899999999976554433 467889999999984432111
Q ss_pred chHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHH----HHHHHHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 590 GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 590 ~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
..+.|+|++|++.+|.|++|+.+++.+|+. ..+.++...+...++++.++++++..|++..
T Consensus 317 ---------------~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a 381 (444)
T 1g41_A 317 ---------------SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAA 381 (444)
T ss_dssp ---------------GGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHH
T ss_pred ---------------hhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHH
Confidence 126699999999889999999999999994 4666777778888999999999999999865
Q ss_pred c-----cccccccccccchHHHHHHHHHhcccC
Q psy14500 666 F-----DLIYGARDVHGCKKSLSILLKKIHKKS 693 (938)
Q Consensus 666 ~-----~~~~~~~dl~~~~~~l~~~l~~~~~~~ 693 (938)
+ ..+.|+|.|+.. ++++++++.|.-
T Consensus 382 ~~~~~~t~~~GaR~L~~~---ie~~~~~~~~~~ 411 (444)
T 1g41_A 382 FRVNEKTENIGARRLHTV---MERLMDKISFSA 411 (444)
T ss_dssp HHHHHHSCCCGGGHHHHH---HHHHHHHHHHHG
T ss_pred HHhccCCccCCchHHHHH---HHHHHHHHHhhc
Confidence 4 478999999999 888888877753
No 26
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.84 E-value=1.2e-20 Score=201.70 Aligned_cols=226 Identities=16% Similarity=0.235 Sum_probs=166.6
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++|++.++..+...+...... ..++||+||||||||++|+++++.+...+.+++.++|+.+........++
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~-------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 78 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPL-------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTS-------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhc
Confidence 45789999999998888765421 13799999999999999999999987767899999999987665566788
Q ss_pred CCCCC-CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhh
Q psy14500 507 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585 (938)
Q Consensus 507 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 585 (938)
|...+ +.|.... ....+..+.+++||||||+.+++..|+.|+++|+++.+...++......++.+|+|||.+...+.
T Consensus 79 g~~~~~~~g~~~~--~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~ 156 (265)
T 2bjv_A 79 GHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV 156 (265)
T ss_dssp CCC---------C--CCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHH
T ss_pred CCccccccccccc--ccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHH
Confidence 87544 3332211 12334456678999999999999999999999999887765554445567899999998655332
Q ss_pred hhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeE--EEcHHHHHH
Q psy14500 586 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDL--KISKAALKK 660 (938)
Q Consensus 586 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l--~~~~~~~~~ 660 (938)
. ...|+++|++||+. .+.++|++. +++..++..++..+.... +..+ .++++++++
T Consensus 157 ~-----------------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~---~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 157 N-----------------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREI---KLPLFPGFTERARET 216 (265)
T ss_dssp H-----------------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHT---TCSSCCCBCHHHHHH
T ss_pred H-----------------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHh---CCCcccCcCHHHHHH
Confidence 2 34689999999964 789999986 788888888877665433 3323 689999999
Q ss_pred HHhhcccccccccccccchHHHHHHH
Q psy14500 661 ISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 661 L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
|.. |.|+.+++.+.++ +++++
T Consensus 217 L~~--~~~~gn~reL~~~---l~~~~ 237 (265)
T 2bjv_A 217 LLN--YRWPGNIRELKNV---VERSV 237 (265)
T ss_dssp HHH--SCCTTHHHHHHHH---HHHHH
T ss_pred HHh--CCCCCCHHHHHHH---HHHHH
Confidence 987 6677788888888 66655
No 27
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.84 E-value=3.6e-20 Score=208.06 Aligned_cols=264 Identities=17% Similarity=0.214 Sum_probs=204.0
Q ss_pred ccccccCChHHHHHHHHHhhCCCccccchHHHHHHHHHHHHh---hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEE
Q psy14500 384 TLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLL---CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSF 460 (938)
Q Consensus 384 ~~~~~~v~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l---~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~i 460 (938)
..+.+.++.+++...+....... .+ ..+ ...+...+ ...++|++..++.+...+..... ...++
T Consensus 97 dyl~KP~~~~~L~~~i~~~l~~~--~l-~~~---~~~l~~~~~~~~~~~ig~s~~m~~l~~~i~~~a~-------~~~~v 163 (387)
T 1ny5_A 97 DFLTKPCMLEEIELTINKAIEHR--KL-RKE---NELLRREKDLKEEEYVFESPKMKEILEKIKKISC-------AECPV 163 (387)
T ss_dssp EEEEESCCHHHHHHHHHHHHHHH--HH-HHH---HHHHHHHHHTTCCCCCCCSHHHHHHHHHHHHHTT-------CCSCE
T ss_pred EEecCCCCHHHHHHHHHHHHHHH--HH-HHH---HHHhhhhhhhcchhhhhccHHhhHHHHHHHHhcC-------CCCCe
Confidence 44556788888877776554210 00 001 11112221 24689999999999988876431 12368
Q ss_pred EEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCC-CccccccchhHHHHHhCCCEEEEEcccc
Q psy14500 461 MFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIE 539 (938)
Q Consensus 461 Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid 539 (938)
+++|++||||+++|++|+....+...+|+.+||+.+......+.+||+..| +.|.... ..+.+..+.+|+||||||+
T Consensus 164 li~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~--~~g~~~~a~~gtlfldei~ 241 (387)
T 1ny5_A 164 LITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS--KEGFFELADGGTLFLDEIG 241 (387)
T ss_dssp EEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC--BCCHHHHTTTSEEEEESGG
T ss_pred EEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc--cCCceeeCCCcEEEEcChh
Confidence 999999999999999999998888889999999999888888899998776 3443221 2345677788999999999
Q ss_pred ccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-E
Q psy14500 540 KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-I 618 (938)
Q Consensus 540 ~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~ 618 (938)
.+++.+|..|+++|++|.+...+|......++.+|+|||.+.....+ .+.|+++|++|++. .
T Consensus 242 ~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~-----------------~g~fr~dl~~rl~~~~ 304 (387)
T 1ny5_A 242 ELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVK-----------------EGKFREDLYYRLGVIE 304 (387)
T ss_dssp GCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHH-----------------TTSSCHHHHHHHTTEE
T ss_pred hCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHH-----------------cCCccHHHHHhhcCCe
Confidence 99999999999999999999877776677889999999987765433 56799999999975 6
Q ss_pred EEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 619 IVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 619 i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+.+||+.+ +|+..++..++.++..+..... ..+++++++.|.. |+|++++|.|.++ +++++
T Consensus 305 i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~--~~~~~~a~~~l~~--~~wpGNvreL~~~---i~~~~ 367 (387)
T 1ny5_A 305 IEIPPLRERKEDIIPLANHFLKKFSRKYAKEV--EGFTKSAQELLLS--YPWYGNVRELKNV---IERAV 367 (387)
T ss_dssp EECCCGGGCHHHHHHHHHHHHHHHHHHTTCCC--CEECHHHHHHHHH--SCCTTHHHHHHHH---HHHHH
T ss_pred ecCCcchhccccHHHHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHh--CCCCcHHHHHHHH---HHHHH
Confidence 88899875 8999999998888776554332 4799999999988 7888999999998 77766
No 28
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.84 E-value=6.1e-20 Score=201.16 Aligned_cols=200 Identities=20% Similarity=0.285 Sum_probs=157.2
Q ss_pred hcCCCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
++-+|++++|.+++++.|...+. ..++.++||+||||||||++|+++|+.+ .+..++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~~i 77 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSI 77 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---------TSCEEEEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---------CCCcEEEE
Confidence 45689999999999988887663 2344689999999999999999999986 14578888
Q ss_pred ehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cchhhhhhhhc-----cCCceEEEE
Q psy14500 94 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPEL-----SRGELHCIG 165 (938)
Q Consensus 94 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l-----~~~~i~vI~ 165 (938)
+++.+. ..+.|+.+..++.+|..+.. ..|+||||||+|.+.+.+..... ..+.+.|+..+ ....+++|+
T Consensus 78 ~~~~l~--~~~~g~~~~~~~~lf~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~ 154 (322)
T 1xwi_A 78 SSSDLV--SKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 154 (322)
T ss_dssp ECCSSC--CSSCCSCHHHHHHHHHHHHH-TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEE
T ss_pred EhHHHH--hhhhhHHHHHHHHHHHHHHh-cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEE
Confidence 887776 46788888899999998874 45899999999999876644322 12334444444 246799999
Q ss_pred ecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhh
Q psy14500 166 ATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAI 244 (938)
Q Consensus 166 ~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~ 244 (938)
+||.++ .++++++|||+. +.++.|+.++|..|++.++.. .+..+++..+..++..+.+|. ++...
T Consensus 155 atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~s-----gadl~ 220 (322)
T 1xwi_A 155 ATNIPW-----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT----TQNSLTEADFRELGRKTDGYS-----GADIS 220 (322)
T ss_dssp EESCTT-----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----CCBCCCHHHHHHHHHTCTTCC-----HHHHH
T ss_pred ecCCcc-----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCCC-----HHHHH
Confidence 999997 899999999975 999999999999999987765 345678899999999887765 45555
Q ss_pred hHHHHHH
Q psy14500 245 DLIDEAA 251 (938)
Q Consensus 245 ~ll~~a~ 251 (938)
.+++.|+
T Consensus 221 ~l~~~A~ 227 (322)
T 1xwi_A 221 IIVRDAL 227 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666554
No 29
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.83 E-value=7.5e-20 Score=203.73 Aligned_cols=210 Identities=20% Similarity=0.281 Sum_probs=164.5
Q ss_pred HHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCC
Q psy14500 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEV 81 (938)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~ 81 (938)
++.....+.+++++.+|++++|++.+++.+...+. ...+.++||+||||||||++|+++|+.+
T Consensus 67 ~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----- 141 (357)
T 3d8b_A 67 IELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS----- 141 (357)
T ss_dssp HHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT-----
T ss_pred HHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc-----
Confidence 44455566777789999999999999999988764 2456789999999999999999999988
Q ss_pred CCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC---ccchhhhhhhhcc-
Q psy14500 82 PNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDAGNMLKPELS- 157 (938)
Q Consensus 82 p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~- 157 (938)
+.+++.++++.+. ..+.|+.+..++.+|..+.. ..++||||||+|.|.+.+.... ...+.+.|+..++
T Consensus 142 -----~~~~~~i~~~~l~--~~~~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~ 213 (357)
T 3d8b_A 142 -----GATFFSISASSLT--SKWVGEGEKMVRALFAVARC-QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDG 213 (357)
T ss_dssp -----TCEEEEEEGGGGC--CSSTTHHHHHHHHHHHHHHH-TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC
T ss_pred -----CCeEEEEehHHhh--ccccchHHHHHHHHHHHHHh-cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhc
Confidence 7899999998877 45778888888999988874 4488999999999987543221 1223444555543
Q ss_pred -----CCceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhh
Q psy14500 158 -----RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSY 231 (938)
Q Consensus 158 -----~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~ 231 (938)
...+++|++||.++ .+++++++||.. +.++.|+.+++..|++.++.. .+..+++.++..++..+.
T Consensus 214 ~~~~~~~~v~vI~atn~~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~l~~la~~t~ 284 (357)
T 3d8b_A 214 ATTSSEDRILVVGATNRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK----EQCCLSEEEIEQIVQQSD 284 (357)
T ss_dssp ----CCCCEEEEEEESCGG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT----SCBCCCHHHHHHHHHHTT
T ss_pred ccccCCCCEEEEEecCChh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh----cCCCccHHHHHHHHHHcC
Confidence 35789999999987 899999999985 899999999999999988765 356788999999999887
Q ss_pred hccccCCCchhhhhHHHHH
Q psy14500 232 RYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 232 ~~~~~~~~p~~a~~ll~~a 250 (938)
+|. ++....+++.+
T Consensus 285 G~s-----~~dl~~l~~~a 298 (357)
T 3d8b_A 285 AFS-----GADMTQLCREA 298 (357)
T ss_dssp TCC-----HHHHHHHHHHH
T ss_pred CCC-----HHHHHHHHHHH
Confidence 765 34444555444
No 30
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.83 E-value=4.5e-20 Score=210.07 Aligned_cols=201 Identities=20% Similarity=0.317 Sum_probs=161.9
Q ss_pred hhHHHHHhcCCCCCccccHHHH---HHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEI---RRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~---~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
.+|.+++||.+|+++||++..+ +.+...+.....+++||+||||||||++|+++++.+ +..++.++.
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a 83 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISA 83 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEET
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEe
Confidence 6999999999999999999999 788888888888899999999999999999999988 677887775
Q ss_pred hhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHH
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEY 172 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~ 172 (938)
... + ...++.++..+. ....+.||||||+|.+.. ..++.|+..++.+.+++|++|+.+.
T Consensus 84 ~~~--~-------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~--------~~q~~LL~~le~~~v~lI~att~n~- 145 (447)
T 3pvs_A 84 VTS--G-------VKEIREAIERARQNRNAGRRTILFVDEVHRFNK--------SQQDAFLPHIEDGTITFIGATTENP- 145 (447)
T ss_dssp TTC--C-------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------CCHHHHHTTSCEEEEEESSCG-
T ss_pred ccC--C-------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH--------HHHHHHHHHHhcCceEEEecCCCCc-
Confidence 321 1 113455555443 234578999999999944 3456799999999999999987665
Q ss_pred HHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcc---cCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHH
Q psy14500 173 RQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVH---HGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 249 (938)
Q Consensus 173 ~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~---~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 249 (938)
...+++++.+||..+.|++|+.+++..+++.++...... .++.++++++..++..+.+.+ +.+..+++.
T Consensus 146 --~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~------R~lln~Le~ 217 (447)
T 3pvs_A 146 --SFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA------RRALNTLEM 217 (447)
T ss_dssp --GGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH------HHHHHHHHH
T ss_pred --ccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH------HHHHHHHHH
Confidence 347899999999999999999999999999888764332 457799999999999998888 889999988
Q ss_pred HHHHHH
Q psy14500 250 AAAKIK 255 (938)
Q Consensus 250 a~~~~~ 255 (938)
++....
T Consensus 218 a~~~a~ 223 (447)
T 3pvs_A 218 MADMAE 223 (447)
T ss_dssp HHHHSC
T ss_pred HHHhcc
Confidence 876543
No 31
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.83 E-value=4.5e-20 Score=208.42 Aligned_cols=194 Identities=23% Similarity=0.362 Sum_probs=150.1
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL 86 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~ 86 (938)
..|++++++.+|++++|++.+++.+..++. .....++||+||||||||++|+++|+.+
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---------- 172 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---------- 172 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT----------
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh----------
Confidence 356777889999999999999999988762 2345789999999999999999999987
Q ss_pred CCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC---ccchhhhhhhhcc------
Q psy14500 87 SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDAGNMLKPELS------ 157 (938)
Q Consensus 87 ~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~------ 157 (938)
+.+++.++++.+. ..+.|..+..+..+|..+... .++||||||+|.|...+.... ...+++.|+..++
T Consensus 173 ~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 173 NATFFNISAASLT--SKYVGEGEKLVRALFAVAREL-QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp TCEEEEECSCCC---------CHHHHHHHHHHHHHS-SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred cCcEEEeeHHHhh--ccccchHHHHHHHHHHHHHhc-CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 7899999998776 456788888889999988754 478999999999976543221 2234444554443
Q ss_pred CCceEEEEecChhHHHHhhhcCHHHHcccc-eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 158 RGELHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 158 ~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
...+++|++||.++ .+++++++||. .+.|+.|+.+++..|++.++.. .+..+++.++..++..+.+|.
T Consensus 250 ~~~v~vI~atn~~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~~~~la~~~~g~~ 318 (389)
T 3vfd_A 250 DDRVLVMGATNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK----QGSPLTQKELAQLARMTDGYS 318 (389)
T ss_dssp --CEEEEEEESCGG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCCCSCHHHHHHHHHHTTTCC
T ss_pred CCCEEEEEecCCch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCC
Confidence 45699999999987 89999999997 4999999999999999988765 467789999999999988876
No 32
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.83 E-value=7.1e-21 Score=222.80 Aligned_cols=252 Identities=20% Similarity=0.284 Sum_probs=171.9
Q ss_pred HHHHHHHHhhCCCccccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHH
Q psy14500 394 EIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTEL 473 (938)
Q Consensus 394 ~i~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~l 473 (938)
.+..++.+++++||....... ..+.++.+.|.+.++|++.+++.+...+......... +..+++|+||||||||++
T Consensus 49 ~~~~~l~~~~~lp~~~~~~~~-~~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~---~g~~vll~Gp~GtGKTtl 124 (543)
T 3m6a_A 49 VIRNYIDWLVALPWTDETDDK-LDLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL---KGPILCLAGPPGVGKTSL 124 (543)
T ss_dssp HHHHHHHHHHHSCSSCCCCCC-CCTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC---CSCEEEEESSSSSSHHHH
T ss_pred HHHHHHHHHhcCCCCcccccc-ccHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC---CCCEEEEECCCCCCHHHH
Confidence 456688888999987655432 1234456667888999999999998776554433322 234799999999999999
Q ss_pred HHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhC--CCEEEEEccccccCHH----HHH
Q psy14500 474 CKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK--PYSLILLDEIEKANSD----VFN 547 (938)
Q Consensus 474 A~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~--~~~vl~lDEid~~~~~----~~~ 547 (938)
|++||..+ +.++..+++..+.. ...++|....|+|...+.. ...+..+ .++|+|||||+++++. .++
T Consensus 125 ar~ia~~l---~~~~~~i~~~~~~~---~~~~~g~~~~~ig~~~~~~-~~~~~~a~~~~~vl~lDEid~l~~~~~~~~~~ 197 (543)
T 3m6a_A 125 AKSIAKSL---GRKFVRISLGGVRD---ESEIRGHRRTYVGAMPGRI-IQGMKKAGKLNPVFLLDEIDKMSSDFRGDPSS 197 (543)
T ss_dssp HHHHHHHH---TCEEEEECCCC-----------------------CH-HHHHHTTCSSSEEEEEEESSSCC---------
T ss_pred HHHHHHhc---CCCeEEEEecccch---hhhhhhHHHHHhccCchHH-HHHHHHhhccCCEEEEhhhhhhhhhhccCHHH
Confidence 99999999 67899999887654 3445566666777655432 3333333 4679999999999987 569
Q ss_pred HHHHhhcCCce---ecC-CCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccC
Q psy14500 548 ILLQILDDGRL---TDN-RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRY 623 (938)
Q Consensus 548 ~Ll~~le~g~~---~~~-~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~ 623 (938)
.|+++|+.+.. .+. .+..++..+++||+|||... .++|+|++|| .+|.|++
T Consensus 198 ~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~------------------------~l~~aL~~R~-~vi~~~~ 252 (543)
T 3m6a_A 198 AMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA------------------------TIPGPLRDRM-EIINIAG 252 (543)
T ss_dssp CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT------------------------TSCHHHHHHE-EEEECCC
T ss_pred HHHHHHhhhhcceeecccCCeeecccceEEEeccCccc------------------------cCCHHHHhhc-ceeeeCC
Confidence 99999986543 332 25566778999999999743 4889999999 5899999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHccCC---eEEEcHHHHHHHHhhcccccccccccccchHHHHHHHH
Q psy14500 624 LNRKNILSIANIQLNILKNKLLKMNM---DLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLK 687 (938)
Q Consensus 624 l~~e~~~~i~~~~l~~~~~~~~~~~~---~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~ 687 (938)
++.++..+|+...+.. +.++..++ .+.++++++..|+. .|.|..|+|.+.+. +++++.
T Consensus 253 ~~~~e~~~Il~~~l~~--~~~~~~~~~~~~i~i~~~~l~~l~~-~~~~~~~vR~L~~~---i~~~~~ 313 (543)
T 3m6a_A 253 YTEIEKLEIVKDHLLP--KQIKEHGLKKSNLQLRDQAILDIIR-YYTREAGVRSLERQ---LAAICR 313 (543)
T ss_dssp CCHHHHHHHHHHTHHH--HHHHHTTCCGGGCEECHHHHHHHHH-HHCCCSSSHHHHHH---HHHHHH
T ss_pred CCHHHHHHHHHHHHHH--HHHHHcCCCcccccCCHHHHHHHHH-hCChhhchhHHHHH---HHHHHH
Confidence 9999999998877632 23333343 57899999999887 68888999999988 555443
No 33
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.82 E-value=8.8e-20 Score=203.11 Aligned_cols=225 Identities=16% Similarity=0.240 Sum_probs=182.3
Q ss_pred cccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcC
Q psy14500 428 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 507 (938)
Q Consensus 428 ~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 507 (938)
.++|++..+..+...+...... ..+++++|++||||+.+|++++....+.+ +|+.+||+.+......+.+||
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~-------~~~vli~GesGtGKe~lAr~ih~~s~r~~-~fv~vnc~~~~~~~~~~~lfg 201 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKS-------KAPVLITGESGTGKEIVARLIHRYSGRKG-AFVDLNCASIPQELAESELFG 201 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTS-------CSCEEEECCTTSSHHHHHHHHHHHHCCCS-CEEEEESSSSCTTTHHHHHHE
T ss_pred cccccchHHHHHHhhhhhhhcc-------chhheEEeCCCchHHHHHHHHHHhccccC-CcEEEEcccCChHHHHHHhcC
Confidence 4678888888887777655421 23699999999999999999999885544 499999999988888889999
Q ss_pred CCCC-CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhh
Q psy14500 508 APPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 586 (938)
Q Consensus 508 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 586 (938)
+..| +.|.... -.+.+..+.+++||||||+.+++..|..|+++|++|.+...++......++.+|+|||.+......
T Consensus 202 ~~~g~~tga~~~--~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~ 279 (368)
T 3dzd_A 202 HEKGAFTGALTR--KKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIK 279 (368)
T ss_dssp ECSCSSSSCCCC--EECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHH
T ss_pred ccccccCCcccc--cCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHH
Confidence 8776 3343322 234556678899999999999999999999999999999877766667789999999987654433
Q ss_pred hhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCH--HHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHh
Q psy14500 587 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 663 (938)
Q Consensus 587 ~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~--e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~ 663 (938)
.+.|+++|++|+.. .|.+|||.+ +|+..++..++.++........ +.+++++++.|..
T Consensus 280 -----------------~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~--~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 280 -----------------KGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNC--FELSEETKEYLMK 340 (368)
T ss_dssp -----------------TTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCC--CCBCHHHHHHHHT
T ss_pred -----------------cCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCC--CCcCHHHHHHHHh
Confidence 56899999999976 588999987 8999999999988876654432 5799999999988
Q ss_pred hcccccccccccccchHHHHHHH
Q psy14500 664 IGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 664 ~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
|+|+.++|.+.++ +++++
T Consensus 341 --~~wpGNvreL~n~---i~~~~ 358 (368)
T 3dzd_A 341 --QEWKGNVRELKNL---IERAV 358 (368)
T ss_dssp --CCCTTHHHHHHHH---HHHHH
T ss_pred --CCCCcHHHHHHHH---HHHHH
Confidence 8888889999888 77776
No 34
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.82 E-value=2.4e-19 Score=195.10 Aligned_cols=196 Identities=23% Similarity=0.316 Sum_probs=154.5
Q ss_pred HhhhHHHHHhcCCCCCccccHHHHHHHHHHHhc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCC
Q psy14500 17 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQR------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS 84 (938)
Q Consensus 17 ~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~------------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~ 84 (938)
....+.+++++.+|++++|++++++.+...+.. ..+.++||+||||||||++|+++|+.+
T Consensus 7 ~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~-------- 78 (297)
T 3b9p_A 7 ILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC-------- 78 (297)
T ss_dssp HHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT--------
T ss_pred HHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh--------
Confidence 344567778889999999999999999887632 346789999999999999999999988
Q ss_pred cCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC---ccchhhhhhhhccC---
Q psy14500 85 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDAGNMLKPELSR--- 158 (938)
Q Consensus 85 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~l~~--- 158 (938)
+.+++.++++.+. ..+.|..+..++.+|..+.. ..|+||||||+|.+........ .....+.|+..++.
T Consensus 79 --~~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~ 153 (297)
T 3b9p_A 79 --SATFLNISAASLT--SKYVGDGEKLVRALFAVARH-MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPG 153 (297)
T ss_dssp --TCEEEEEESTTTS--SSSCSCHHHHHHHHHHHHHH-TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-
T ss_pred --CCCeEEeeHHHHh--hcccchHHHHHHHHHHHHHH-cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccc
Confidence 7788899988776 45677788888888888774 4588999999999987654321 12233444444431
Q ss_pred ----CceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhc
Q psy14500 159 ----GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 233 (938)
Q Consensus 159 ----~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 233 (938)
..+++|++||.++ .+++++++||.. +.++.|+.+++..|++.++.. .+..+++.++..++..+.+|
T Consensus 154 ~~~~~~v~vi~~tn~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~~~~la~~~~g~ 224 (297)
T 3b9p_A 154 NPDGDRIVVLAATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK----QGSPLDTEALRRLAKITDGY 224 (297)
T ss_dssp -----CEEEEEEESCGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGG----GSCCSCHHHHHHHHHHTTTC
T ss_pred cCCCCcEEEEeecCChh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC
Confidence 4689999999997 899999999975 999999999999999988765 35568899999999988776
Q ss_pred c
Q psy14500 234 I 234 (938)
Q Consensus 234 ~ 234 (938)
.
T Consensus 225 ~ 225 (297)
T 3b9p_A 225 S 225 (297)
T ss_dssp C
T ss_pred C
Confidence 6
No 35
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.81 E-value=9.8e-20 Score=208.35 Aligned_cols=206 Identities=20% Similarity=0.284 Sum_probs=153.1
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCC
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLS 87 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~ 87 (938)
.+...+++.+|++++|++++++.|...+. ...+.++||+||||||||++|+++|+.+ .+
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~---------~~ 193 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NN 193 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---------CS
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---------CC
Confidence 33444567799999999999999888662 2445789999999999999999999986 14
Q ss_pred CeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cchhhhhhhhcc-----CC
Q psy14500 88 KKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPELS-----RG 159 (938)
Q Consensus 88 ~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l~-----~~ 159 (938)
.+++.++++.+. ..+.|..+..++.+|..+.. ..|+||||||+|.+.+.+..... ..+.+.|+..++ ..
T Consensus 194 ~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~ 270 (444)
T 2zan_A 194 STFFSISSSDLV--SKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDND 270 (444)
T ss_dssp SEEEEECCC-----------CCCTHHHHHHHHHH-SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCCCS
T ss_pred CCEEEEeHHHHH--hhhcchHHHHHHHHHHHHHH-cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccCCC
Confidence 578888887776 35667777778889988874 45899999999999876543322 224445555553 45
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
.++||+|||.++ .++++++|||+. +.++.|+.++|..|++.++.. .+..+++..+..++..+.+|.
T Consensus 271 ~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~s---- 337 (444)
T 2zan_A 271 GILVLGATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS----TQNSLTEADFQELGRKTDGYS---- 337 (444)
T ss_dssp SCEEEEEESCGG-----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCEECCHHHHHHHHHHTTTCC----
T ss_pred CEEEEecCCCcc-----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCCC----
Confidence 799999999997 899999999985 999999999999999988765 344578899999999987765
Q ss_pred CchhhhhHHHHHH
Q psy14500 239 MPDKAIDLIDEAA 251 (938)
Q Consensus 239 ~p~~a~~ll~~a~ 251 (938)
++....++..++
T Consensus 338 -gadl~~l~~~a~ 349 (444)
T 2zan_A 338 -GADISIIVRDAL 349 (444)
T ss_dssp -HHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHH
Confidence 455556665554
No 36
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.81 E-value=2.9e-20 Score=222.27 Aligned_cols=198 Identities=20% Similarity=0.320 Sum_probs=137.9
Q ss_pred CCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
+++++.|.+++.+.|...+. ...+.++|||||||||||++|+++|.++ +.+++.++.
T Consensus 475 ~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~~ 544 (806)
T 3cf2_A 475 TWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIKG 544 (806)
T ss_dssp CSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECCH
T ss_pred CHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEecc
Confidence 57788999999888877543 2445689999999999999999999998 889999999
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC------Cccchhhhhhhhcc----CCceEEEE
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE------GSIDAGNMLKPELS----RGELHCIG 165 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~------~~~~~~~~L~~~l~----~~~i~vI~ 165 (938)
+.+. ++|.|+.++.++.+|..|+. ..|+||||||+|.+++.++.. .+..+.+.|+..|+ ...|++|+
T Consensus 545 ~~l~--s~~vGese~~vr~lF~~Ar~-~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~ 621 (806)
T 3cf2_A 545 PELL--TMWFGESEANVREIFDKARQ-AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIG 621 (806)
T ss_dssp HHHH--TTTCSSCHHHHHHHHHHHHT-TCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEEC
T ss_pred chhh--ccccchHHHHHHHHHHHHHH-cCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEE
Confidence 9988 67999999999999999985 459999999999999876421 12235566666663 45799999
Q ss_pred ecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchh
Q psy14500 166 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 242 (938)
Q Consensus 166 ~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 242 (938)
|||.++ .+|++++| ||+. |+|+.|+.++|.+||+.++.+.....+ ..+..++..+.+|. +++
T Consensus 622 aTN~p~-----~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~~-----~dl~~la~~t~g~S-----Gad 686 (806)
T 3cf2_A 622 ATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKD-----VDLEFLAKMTNGFS-----GAD 686 (806)
T ss_dssp C-CCSS-----SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CCC--------------------------C
T ss_pred eCCCch-----hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCCC-----CCHHHHHHhCCCCC-----HHH
Confidence 999998 89999999 9996 999999999999999988765433222 23566677766654 566
Q ss_pred hhhHHHHHHHHH
Q psy14500 243 AIDLIDEAAAKI 254 (938)
Q Consensus 243 a~~ll~~a~~~~ 254 (938)
...++.+|+..+
T Consensus 687 i~~l~~~A~~~a 698 (806)
T 3cf2_A 687 LTEICQRACKLA 698 (806)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 677777765443
No 37
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.80 E-value=3.3e-18 Score=184.85 Aligned_cols=203 Identities=23% Similarity=0.338 Sum_probs=155.7
Q ss_pred hcCCCCCccccHHHHHHHHHHHhc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~~-------------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
++-+|++++|++++++.+...+.. ..+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~ 81 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIR 81 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEE
Confidence 345899999999999999887643 466789999999999999999999998 788999
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC---Cccchhhhhhhhc-------cCCceE
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSIDAGNMLKPEL-------SRGELH 162 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~~~~~L~~~l-------~~~~i~ 162 (938)
+++..+. ..+.|..+..+..+|..+... .|+||||||+|.+.+.+... +....+..+..++ ..+.++
T Consensus 82 v~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 158 (285)
T 3h4m_A 82 VVGSELV--KKFIGEGASLVKDIFKLAKEK-APSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVK 158 (285)
T ss_dssp EEGGGGC--CCSTTHHHHHHHHHHHHHHHT-CSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEE
T ss_pred EehHHHH--HhccchHHHHHHHHHHHHHHc-CCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 9988876 457788888899999988754 47899999999998765432 1223334444333 245799
Q ss_pred EEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 163 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 163 vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
+|+|||.++ .+++++++ ||.. +.++.|+.+++..|++.+....... .+..+..++..+.++.
T Consensus 159 vI~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~l~~~~~g~~----- 223 (285)
T 3h4m_A 159 IIGATNRPD-----ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-----EDVNLEEIAKMTEGCV----- 223 (285)
T ss_dssp EEEECSCGG-----GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-----TTCCHHHHHHHCTTCC-----
T ss_pred EEEeCCCch-----hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-----CcCCHHHHHHHcCCCC-----
Confidence 999999998 89999999 9985 9999999999999999877653222 2223566777766554
Q ss_pred chhhhhHHHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKIKI 256 (938)
Q Consensus 240 p~~a~~ll~~a~~~~~~ 256 (938)
++....++..+...+..
T Consensus 224 ~~~i~~l~~~a~~~a~~ 240 (285)
T 3h4m_A 224 GAELKAICTEAGMNAIR 240 (285)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 56677777777665543
No 38
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.79 E-value=5.1e-19 Score=192.28 Aligned_cols=201 Identities=20% Similarity=0.319 Sum_probs=150.3
Q ss_pred HhcCCCCCccccHHHHHHHHHHHhc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEE
Q psy14500 25 ARLGKLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 91 (938)
Q Consensus 25 ~~~~~~~~lvG~~~~~~~l~~~l~~-------------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~ 91 (938)
.++-+|++++|.+++++.+...+.. ..+.++||+||||||||++|+++|+.+ +.+++
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i 78 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFI 78 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEE
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEE
Confidence 3556899999999998888886642 455679999999999999999999988 67899
Q ss_pred EEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC------Cccchhhhhhhhcc----CCce
Q psy14500 92 LLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE------GSIDAGNMLKPELS----RGEL 161 (938)
Q Consensus 92 ~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~------~~~~~~~~L~~~l~----~~~i 161 (938)
.+++..+. ..+.|+.+..++.+|..+... .|+||||||+|.+.+.++.. ....+.+.|+..++ ..++
T Consensus 79 ~v~~~~l~--~~~~g~~~~~~~~~f~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v 155 (301)
T 3cf0_A 79 SIKGPELL--TMWFGESEANVREIFDKARQA-APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 155 (301)
T ss_dssp EECHHHHH--HHHHTTCTTHHHHHHHHHHHT-CSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSE
T ss_pred EEEhHHHH--hhhcCchHHHHHHHHHHHHhc-CCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCE
Confidence 99988776 345676677788999988744 48899999999998653221 12234455665553 4579
Q ss_pred EEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 162 HCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 162 ~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
++|++||.++ .+++++++ ||.. ++|+.|+.++|..|++.++....... .+ .+..++..+.+|.
T Consensus 156 ~vi~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~--~~---~~~~la~~~~g~s---- 221 (301)
T 3cf0_A 156 FIIGATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK--DV---DLEFLAKMTNGFS---- 221 (301)
T ss_dssp EEEEEESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCS--SC---CHHHHHHTCSSCC----
T ss_pred EEEEecCCcc-----ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCc--cc---hHHHHHHHcCCCC----
Confidence 9999999998 89999999 9985 99999999999999998887643221 22 2445556555543
Q ss_pred CchhhhhHHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAAK 253 (938)
Q Consensus 239 ~p~~a~~ll~~a~~~ 253 (938)
+++...+++.|+..
T Consensus 222 -g~dl~~l~~~a~~~ 235 (301)
T 3cf0_A 222 -GADLTEICQRACKL 235 (301)
T ss_dssp -HHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHH
Confidence 44555666665543
No 39
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.79 E-value=5e-20 Score=212.02 Aligned_cols=170 Identities=14% Similarity=0.157 Sum_probs=114.1
Q ss_pred hhHHHHHhcC-CCCCccccHHHHHHHHHHH---hc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 19 IDLTEKARLG-KLDPVIGRDDEIRRAIQVL---QR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 19 ~~l~~~~~~~-~~~~lvG~~~~~~~l~~~l---~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
.+|.+.++|. .|++++|++++++.+..++ .. .++.++||+||||||||++|+++|+.+.. ..+++.
T Consensus 24 ~~l~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~--------~~~~~~ 95 (456)
T 2c9o_A 24 LGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS--------KVPFCP 95 (456)
T ss_dssp CCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT--------TSCEEE
T ss_pred CCCCcccChhhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC--------CceEEE
Confidence 3455666666 4699999999877655433 32 33468999999999999999999999821 278899
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHH--hcCCCeEEEEeCccccccCCCCCCc---c-c------------------h
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEIS--NNQKDIIIFIDELHTMIGTGKVEGS---I-D------------------A 148 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~--~~~~~~iL~iDEid~l~~~~~~~~~---~-~------------------~ 148 (938)
++++.+. .++.|+.+. +...|..+. ....|+||||||+|.+++.+..... . . +
T Consensus 96 ~~~~~~~--~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 172 (456)
T 2c9o_A 96 MVGSEVY--STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKL 172 (456)
T ss_dssp EEGGGGC--CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEE
T ss_pred EeHHHHH--HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhh
Confidence 9988887 567888886 889998872 2345899999999999987643311 0 0 0
Q ss_pred hhhhhhhc-----cCCceEEE-EecChhHHHHhhhcCHHHHc--ccce---EEeeCCC--HHHHHHHHH
Q psy14500 149 GNMLKPEL-----SRGELHCI-GATTLNEYRQYIEKDAAFER--RFQK---ILVEEPD--IEETISILR 204 (938)
Q Consensus 149 ~~~L~~~l-----~~~~i~vI-~~tn~~~~~~~~~ld~al~~--Rf~~---i~~~~p~--~~e~~~il~ 204 (938)
.+.+...+ ..+.+++| +|||.+. .+|+++.+ ||+. +.++.|+ .++|..|++
T Consensus 173 ~~~ll~~l~~~~~~~~~~v~i~attn~~~-----~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~ 236 (456)
T 2c9o_A 173 DPSIFESLQKERVEAGDVIYIEANSGAVK-----RQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQ 236 (456)
T ss_dssp CHHHHHHHHHTTCCTTEEEEEETTTCCEE-----EEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEE
T ss_pred hHHHHHHHhhccCCCCCEEEEEcCCCCcc-----cCChhhcCCcccCcceeEecCCCchhHHHHHHHHH
Confidence 01122222 34555555 6777776 78888865 8864 5666664 344555543
No 40
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=99.79 E-value=6.1e-20 Score=190.21 Aligned_cols=195 Identities=24% Similarity=0.337 Sum_probs=130.8
Q ss_pred ccccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHHHHHhcccc--
Q psy14500 668 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININK-- 745 (938)
Q Consensus 668 ~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~-- 745 (938)
..+.++|+||++.++.++++.+++.+..+.+|++||++|+|+.+.++++++.+ ..+++|+||||.+++.+......
T Consensus 14 ~i~visDiHg~~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~~~~~~~~~l~~--~~~~~v~GNhd~~~~~~~~~~~~~~ 91 (221)
T 1g5b_A 14 NIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITF--PWFRAVRGNHEQMMIDGLSERGNVN 91 (221)
T ss_dssp CEEEECCCTTCHHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCHHHHHGGGGS--TTEEECCCHHHHHHHHHHSTTCCCH
T ss_pred eEEEEEcCCCCHHHHHHHHHHccCCCCCCEEEEeCCccCCCCChHHHHHHHhc--CCEEEEccCcHHHHHhhhccCCcHH
Confidence 44678999999999999999988755678999999999999999999998864 35899999999998876532211
Q ss_pred ----CCccccHH-HhhCCCCHHHHHHHHhcCCceEEe----CCEEEEecccCcCCC-HHHHHHHhHHHHHHhhhccHHHH
Q psy14500 746 ----KSKLDTFD-DILDAPDKKKLVSWLRTQPLAIYY----KKYLMIHAGVAKQWT-AQQTIKLSHQVEKILRTSYWKNL 815 (938)
Q Consensus 746 ----~~~~~~~~-~~~~~~~~~~~~~~l~~lp~~~~~----~~~~~vHAg~~p~~~-~~~~~~~~~~~~~~l~~~~~~~~ 815 (938)
+....++. .+......+++.+||++||..++. .++++||||++|... +.. +.. +..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~~~~~~~~i~~vHgg~~~~~~~~~~--~~~-----------~~~- 157 (221)
T 1g5b_A 92 HWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFGK--PVD-----------HQQ- 157 (221)
T ss_dssp HHHTTTGGGGGGSCHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEECSSCCCSSBCCTTC--CCC-----------HHH-
T ss_pred HHHHcCCCchhhcCHHHHHHHHHHHHHHHhCCcEEEEEecCCeEEEEecCCChhhcccCC--Ccc-----------ccc-
Confidence 01110000 001111246789999999999864 479999999876421 000 000 000
Q ss_pred HHHhcCCCCCCCCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCCcCCCceEEE
Q psy14500 816 FFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLF 895 (938)
Q Consensus 816 ~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~ 895 (938)
..|++. ++.. ..+ .|. ....+...|||
T Consensus 158 ---------~lw~~~----------------------~~~~-------~~~------------~~~---~~~~~~~~vv~ 184 (221)
T 1g5b_A 158 ---------VIWNRE----------------------RISN-------SQN------------GIV---KEIKGADTFIF 184 (221)
T ss_dssp ---------HHHCCH----------------------HHHH-------HHT------------TCC---CCCBTSSEEEE
T ss_pred ---------cccCch----------------------hhhh-------hcc------------ccC---CcccCCCEEEE
Confidence 002110 0000 000 000 00112357999
Q ss_pred ccCCCcCcccCCCeEEeccccccCCeEEEEEecCCc
Q psy14500 896 GHWSTLGLIMKPNIICLDTGCVWGNKLTALCLEDRS 931 (938)
Q Consensus 896 GH~~~~~~~~~~~~~~lDtG~~~gg~Lta~~l~~~~ 931 (938)
|||+.+.+...++.++||+||++||+|||++++++.
T Consensus 185 GHth~~~~~~~~~~~~in~Gs~~gg~lt~~~l~~~~ 220 (221)
T 1g5b_A 185 GHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQGAG 220 (221)
T ss_dssp CSSCCSSCEEETTEEECCCCHHHHSCCCEEEEECC-
T ss_pred CCCCCccceeeCCEEEEECCCCcCCceEEEEecCCC
Confidence 999999988889999999999999999999998753
No 41
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.79 E-value=4.8e-19 Score=195.16 Aligned_cols=198 Identities=16% Similarity=0.218 Sum_probs=158.1
Q ss_pred HhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCc-EEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 17 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 17 ~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~v-LL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
-...|+++|||.+|++++|+++.++.+..++.....+++ |++||||||||++|+++++.+ +.+++.+++
T Consensus 12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~ 81 (324)
T 3u61_B 12 KEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNG 81 (324)
T ss_dssp TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEET
T ss_pred ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEcc
Confidence 345899999999999999999999999999987776666 556779999999999999998 678888886
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhc----CCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecCh
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNN----QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTL 169 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~----~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~ 169 (938)
+... ...++..+...... +.+.||||||+|.+.. .+.++.|+..++. ..+++|++||.
T Consensus 82 ~~~~---------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 82 SDCK---------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------AESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp TTCC---------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------HHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred cccC---------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------HHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 4421 22345545443322 2468999999999951 3466778888875 57899999999
Q ss_pred hHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhh---hcccCCCCCH-HHHHHHHHhhhhccccCCCchhhhh
Q psy14500 170 NEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKY---EVHHGVEITD-PAIVAASELSYRYISDRFMPDKAID 245 (938)
Q Consensus 170 ~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~---~~~~~~~i~~-~~l~~~~~~s~~~~~~~~~p~~a~~ 245 (938)
.. .+++++.+||..+.|++|+.+++..|++.+...+ ....++.+++ +++..++..+.+.+ +.++.
T Consensus 146 ~~-----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~------R~a~~ 214 (324)
T 3u61_B 146 ID-----GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF------RKTIG 214 (324)
T ss_dssp GG-----GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT------THHHH
T ss_pred cc-----ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH------HHHHH
Confidence 87 7899999999999999999999888876655443 2356788988 99999999998888 88888
Q ss_pred HHHHHH
Q psy14500 246 LIDEAA 251 (938)
Q Consensus 246 ll~~a~ 251 (938)
.++.++
T Consensus 215 ~L~~~~ 220 (324)
T 3u61_B 215 ELDSYS 220 (324)
T ss_dssp HHHHHG
T ss_pred HHHHHh
Confidence 888776
No 42
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.79 E-value=1.9e-18 Score=191.71 Aligned_cols=197 Identities=20% Similarity=0.235 Sum_probs=148.3
Q ss_pred HHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhc-----CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14500 15 KKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQR-----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 89 (938)
Q Consensus 15 ~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~-----~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~ 89 (938)
..-...|.++|+|.+|++++|++..++.+..++.. ....++||+||||||||++|+++++.+ +.+
T Consensus 13 ~~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~ 82 (338)
T 3pfi_A 13 YSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SAN 82 (338)
T ss_dssp ----------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCC
T ss_pred cchhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCC
Confidence 34556899999999999999999999988887763 455789999999999999999999987 677
Q ss_pred EEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCc---------
Q psy14500 90 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE--------- 160 (938)
Q Consensus 90 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~--------- 160 (938)
++.+++..+.. .+ .+...+.. ...+.+|||||++.+. .+.++.|+..++.+.
T Consensus 83 ~~~~~~~~~~~----~~----~~~~~~~~---~~~~~vl~lDEi~~l~--------~~~~~~Ll~~l~~~~~~~~~~~~~ 143 (338)
T 3pfi_A 83 IKTTAAPMIEK----SG----DLAAILTN---LSEGDILFIDEIHRLS--------PAIEEVLYPAMEDYRLDIIIGSGP 143 (338)
T ss_dssp EEEEEGGGCCS----HH----HHHHHHHT---CCTTCEEEEETGGGCC--------HHHHHHHHHHHHTSCC--------
T ss_pred eEEecchhccc----hh----HHHHHHHh---ccCCCEEEEechhhcC--------HHHHHHHHHHHHhccchhhcccCc
Confidence 88888755421 11 23333333 3446799999999984 356667777776542
Q ss_pred -----------eEEEEecChhHHHHhhhcCHHHHcccc-eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHH
Q psy14500 161 -----------LHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASE 228 (938)
Q Consensus 161 -----------i~vI~~tn~~~~~~~~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~ 228 (938)
+++|++||... .+++++++||. .+.|++|+.+++..+++..+.. .++.++++++..++.
T Consensus 144 ~~~~~~~~~~~~~~i~atn~~~-----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~l~~ 214 (338)
T 3pfi_A 144 AAQTIKIDLPKFTLIGATTRAG-----MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK----LNKTCEEKAALEIAK 214 (338)
T ss_dssp -CCCCCCCCCCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHH
T ss_pred cccceecCCCCeEEEEeCCCcc-----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHH
Confidence 78999999987 78999999995 5999999999999999987765 357789999999998
Q ss_pred hhhhccccCCCchhhhhHHHHHHHHHH
Q psy14500 229 LSYRYISDRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 229 ~s~~~~~~~~~p~~a~~ll~~a~~~~~ 255 (938)
.+.+.+ +.+..+++.+...+.
T Consensus 215 ~~~G~~------r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 215 RSRSTP------RIALRLLKRVRDFAD 235 (338)
T ss_dssp TTTTCH------HHHHHHHHHHHHHHH
T ss_pred HHCcCH------HHHHHHHHHHHHHHH
Confidence 776655 788888877655443
No 43
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.78 E-value=3e-18 Score=196.82 Aligned_cols=204 Identities=23% Similarity=0.313 Sum_probs=159.5
Q ss_pred HHHhcCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14500 23 EKARLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 89 (938)
Q Consensus 23 ~~~~~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~ 89 (938)
+..++.+|++++|++.+++++...+. ...+.++||+||||||||++|+++++.+ +.+
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~ 265 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAF 265 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSE
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCC
Confidence 44567789999999999999888665 3566789999999999999999999987 789
Q ss_pred EEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCc---cchhhhhhhhcc----CCceE
Q psy14500 90 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPELS----RGELH 162 (938)
Q Consensus 90 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l~----~~~i~ 162 (938)
++.++++.+. ..+.|+.+..++.+|..+.. ..|++|||||+|.+.+.++.... ..+++.|+..++ ...++
T Consensus 266 fv~vn~~~l~--~~~~g~~~~~~~~~f~~A~~-~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 266 FFLINGPEIM--SKLAGESESNLRKAFEEAEK-NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp EEEEEHHHHH--TSCTTHHHHHHHHHHHHHHH-TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred EEEEEchHhh--hhhcchhHHHHHHHHHHHHh-cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 9999999887 55779988899999999875 44899999999999886543221 235566666664 46799
Q ss_pred EEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 163 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 163 vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
+|+|||.++ .+++++.+ ||.. ++|+.|+.++|..||+.+........ +..+..++..+.+|.
T Consensus 343 vIaaTn~~~-----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~~-----~~~l~~la~~t~g~s----- 407 (489)
T 3hu3_A 343 VMAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-----DVDLEQVANETHGHV----- 407 (489)
T ss_dssp EEEEESCGG-----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBCT-----TCCHHHHHHTCTTCC-----
T ss_pred EEEecCCcc-----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCcc-----hhhHHHHHHHccCCc-----
Confidence 999999998 79999999 8986 99999999999999998876543221 223456666665554
Q ss_pred chhhhhHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKI 254 (938)
Q Consensus 240 p~~a~~ll~~a~~~~ 254 (938)
++....++..++...
T Consensus 408 ~~dL~~L~~~A~~~a 422 (489)
T 3hu3_A 408 GADLAALCSEAALQA 422 (489)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 455566666665444
No 44
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.78 E-value=7.2e-18 Score=179.72 Aligned_cols=201 Identities=18% Similarity=0.265 Sum_probs=142.2
Q ss_pred cCCCCCccccHHHHHHHHHHHh---c---------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 27 LGKLDPVIGRDDEIRRAIQVLQ---R---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 27 ~~~~~~lvG~~~~~~~l~~~l~---~---------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
+-+|++++|.++.++.+...+. . ..+.++||+||||||||++|+++|+.+ +.+++.++
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~ 71 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMA 71 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEec
Confidence 3579999999998887766543 1 455679999999999999999999998 77889999
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC-------ccchhhhhhhhcc----CCceEE
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG-------SIDAGNMLKPELS----RGELHC 163 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~-------~~~~~~~L~~~l~----~~~i~v 163 (938)
++.+. ..+.|.....+..+|..+... .++||||||+|.+...+.... .....+.++..++ ...+++
T Consensus 72 ~~~~~--~~~~~~~~~~~~~~~~~a~~~-~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 148 (262)
T 2qz4_A 72 GAEFV--EVIGGLGAARVRSLFKEARAR-APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIV 148 (262)
T ss_dssp TTTTS--SSSTTHHHHHHHHHHHHHHHT-CSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEE
T ss_pred hHHHH--hhccChhHHHHHHHHHHHHhc-CCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEE
Confidence 88775 446677777888999888754 488999999999976543211 1222333333332 357899
Q ss_pred EEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHH-HHHHHHHhhhhccccCCC
Q psy14500 164 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDP-AIVAASELSYRYISDRFM 239 (938)
Q Consensus 164 I~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~-~l~~~~~~s~~~~~~~~~ 239 (938)
|++||.++ .+++++.+ ||.. ++|+.|+.++|..|++.++... +...+.. ....++..+.+|.
T Consensus 149 i~~tn~~~-----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~~~l~~~~~g~~----- 214 (262)
T 2qz4_A 149 LASTNRAD-----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL----KLTQSSTFYSQRLAELTPGFS----- 214 (262)
T ss_dssp EEEESCGG-----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT----TCCBTHHHHHHHHHHTCTTCC-----
T ss_pred EecCCChh-----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC----CCCcchhhHHHHHHHHCCCCC-----
Confidence 99999987 78999999 9975 9999999999999999888764 3444444 3456666665543
Q ss_pred chhhhhHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKI 254 (938)
Q Consensus 240 p~~a~~ll~~a~~~~ 254 (938)
++....+++.++..+
T Consensus 215 ~~~l~~l~~~a~~~a 229 (262)
T 2qz4_A 215 GADIANICNEAALHA 229 (262)
T ss_dssp HHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHH
Confidence 456667777665443
No 45
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.77 E-value=1.1e-17 Score=190.19 Aligned_cols=200 Identities=22% Similarity=0.315 Sum_probs=149.3
Q ss_pred CCCCCccccHHHHHHHHHHHh---c---------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQ---R---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~---~---------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
.+|++++|.+++++.+...+. . ..+.++||+||||||||++|+++|.++ +.+++.+++
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~ 82 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISG 82 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEG
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCH
Confidence 489999999998777766543 1 235679999999999999999999998 778999998
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC--C-c---cchhhhhhhhcc----CCceEEEE
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE--G-S---IDAGNMLKPELS----RGELHCIG 165 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~--~-~---~~~~~~L~~~l~----~~~i~vI~ 165 (938)
+.+. ..+.|.....++.+|..+.. ..|+||||||+|.+.+.++.. + . ....+.|+..++ ...+++|+
T Consensus 83 ~~~~--~~~~g~~~~~~r~lf~~A~~-~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIa 159 (476)
T 2ce7_A 83 SDFV--ELFVGVGAARVRDLFAQAKA-HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMA 159 (476)
T ss_dssp GGTT--TCCTTHHHHHHHHHHHHHHH-TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEE
T ss_pred HHHH--HHHhcccHHHHHHHHHHHHh-cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEE
Confidence 8876 35678888889999999875 458999999999998765321 1 1 123455555553 45799999
Q ss_pred ecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchh
Q psy14500 166 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 242 (938)
Q Consensus 166 ~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 242 (938)
+||.++ .+|+++++ ||+. |.|+.|+.++|..|++.++....... +..+..++..+.+|. +++
T Consensus 160 aTn~~~-----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~-----~v~l~~la~~t~G~s-----gad 224 (476)
T 2ce7_A 160 ATNRPD-----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAE-----DVNLEIIAKRTPGFV-----GAD 224 (476)
T ss_dssp EESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT-----TCCHHHHHHTCTTCC-----HHH
T ss_pred ecCChh-----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcc-----hhhHHHHHHhcCCCc-----HHH
Confidence 999998 78999998 9995 99999999999999988776532221 122555666665544 466
Q ss_pred hhhHHHHHHHHHH
Q psy14500 243 AIDLIDEAAAKIK 255 (938)
Q Consensus 243 a~~ll~~a~~~~~ 255 (938)
...+++.++..+.
T Consensus 225 L~~lv~~Aal~A~ 237 (476)
T 2ce7_A 225 LENLVNEAALLAA 237 (476)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7778877766544
No 46
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.77 E-value=2.8e-18 Score=187.74 Aligned_cols=215 Identities=17% Similarity=0.267 Sum_probs=157.0
Q ss_pred HHHHHHHHHhhccccChHHHHHHHHHHHHhhh-------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC----
Q psy14500 416 EKLLNIENLLCKRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN---- 484 (938)
Q Consensus 416 ~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~-------~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~---- 484 (938)
..+.++...+.+.++|++.+++.+...+.... .++..+ ++..++||+||||||||++|+++|+.+...
T Consensus 20 ~~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~ 98 (309)
T 3syl_A 20 SGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR 98 (309)
T ss_dssp TTHHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS
T ss_pred ccHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC
Confidence 34566777888889999999999988775432 233222 344589999999999999999999998543
Q ss_pred CCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEcccccc---------CHHHHHHHHHhhcC
Q psy14500 485 EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKA---------NSDVFNILLQILDD 555 (938)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~---------~~~~~~~Ll~~le~ 555 (938)
..+++.++++++... +.|... ..+...+..+.++||||||+|.+ ++.+++.|++.+++
T Consensus 99 ~~~~~~~~~~~l~~~------------~~g~~~-~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~ 165 (309)
T 3syl_A 99 KGHLVSVTRDDLVGQ------------YIGHTA-PKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN 165 (309)
T ss_dssp SCCEEEECGGGTCCS------------STTCHH-HHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHH
T ss_pred CCcEEEEcHHHhhhh------------cccccH-HHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhc
Confidence 337888887766432 333222 23345555567789999999977 88999999999996
Q ss_pred CceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHH
Q psy14500 556 GRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI 635 (938)
Q Consensus 556 g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~ 635 (938)
+ ..++++|++||..... ....+.|+|.+||+.++.|++++.+++.+|+..
T Consensus 166 ~-----------~~~~~~i~~~~~~~~~-------------------~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~ 215 (309)
T 3syl_A 166 N-----------RDDLVVILAGYADRME-------------------NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGH 215 (309)
T ss_dssp C-----------TTTCEEEEEECHHHHH-------------------HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHH
T ss_pred C-----------CCCEEEEEeCChHHHH-------------------HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHH
Confidence 2 3567889999853211 011246899999999999999999999999877
Q ss_pred HHHHHHHHHHccCCeEEEcHHHHHHHHhhc-----ccccccccccccchHHHHHHH
Q psy14500 636 QLNILKNKLLKMNMDLKISKAALKKISNIG-----FDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 636 ~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~-----~~~~~~~~dl~~~~~~l~~~l 686 (938)
.+.. .+ +.+++++++.++... +.|..+++++.+. +++++
T Consensus 216 ~l~~-------~~--~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~---l~~a~ 259 (309)
T 3syl_A 216 MLDD-------QN--YQMTPEAETALRAYIGLRRNQPHFANARSIRNA---LDRAR 259 (309)
T ss_dssp HHHH-------TT--CEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHH---HHHHH
T ss_pred HHHH-------cC--CCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHH---HHHHH
Confidence 6654 23 679999999998742 2565667787777 55555
No 47
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=3.6e-18 Score=187.60 Aligned_cols=188 Identities=27% Similarity=0.387 Sum_probs=137.6
Q ss_pred hccccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
.++|.|.+++++.+.+.+... ..|...|+ .+||+||||||||++|+++|+.+ +.+|+.++++++.
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~pr----GvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPK----GVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELV 219 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCC----CEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----ceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhh
Confidence 367889999999888877542 22433332 59999999999999999999999 8899999999876
Q ss_pred chhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecC
Q psy14500 498 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDN 561 (938)
Q Consensus 498 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~ 561 (938)
.. |+|..+. +.++...+...+|||||||||.+.+ .+.+.||..|+...
T Consensus 220 sk------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---- 283 (405)
T 4b4t_J 220 QK------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE---- 283 (405)
T ss_dssp CS------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT----
T ss_pred cc------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC----
Confidence 53 6666543 5566667777889999999998742 35677788787411
Q ss_pred CCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 562 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 562 ~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
...++++|+|||.+.. ++|+|+. |||..|.|++++.++..+|++..+..
T Consensus 284 -----~~~~V~vIaATNrpd~------------------------LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 334 (405)
T 4b4t_J 284 -----TSKNIKIIMATNRLDI------------------------LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRK 334 (405)
T ss_dssp -----CCCCEEEEEEESCSSS------------------------SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT
T ss_pred -----CCCCeEEEeccCChhh------------------------CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcC
Confidence 2356789999997543 7889986 99999999999999999997655432
Q ss_pred HHHHHHccCCeEEEcHH-HHHHHHhhcccccccccccccc
Q psy14500 640 LKNKLLKMNMDLKISKA-ALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 640 ~~~~~~~~~~~l~~~~~-~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
.. ++++ -++.|+.. ...|...||...
T Consensus 335 -------~~----l~~dvdl~~lA~~--t~G~SGADi~~l 361 (405)
T 4b4t_J 335 -------MN----LTRGINLRKVAEK--MNGCSGADVKGV 361 (405)
T ss_dssp -------SB----CCSSCCHHHHHHH--CCSCCHHHHHHH
T ss_pred -------CC----CCccCCHHHHHHH--CCCCCHHHHHHH
Confidence 22 1121 14556652 234666777765
No 48
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=9.2e-18 Score=185.12 Aligned_cols=203 Identities=21% Similarity=0.299 Sum_probs=156.5
Q ss_pred HHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 13 YLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 13 ~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
.+.....+|+++|+|.+|++++|+++.++.+..++.....+++||+||||||||++|+++++.+.... ....++.
T Consensus 7 ~~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~~~ 81 (327)
T 1iqp_A 7 EVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNFLE 81 (327)
T ss_dssp HHHHTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHEEE
T ss_pred hhcccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCceEE
Confidence 45666789999999999999999999999999999888778899999999999999999999874321 0124556
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHh-----cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEE
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISN-----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIG 165 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~-----~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~ 165 (938)
++++..... ..++..+..... ...+.++||||+|.+.+ +.++.|+..++. ..+++|+
T Consensus 82 ~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~L~~~le~~~~~~~~i~ 145 (327)
T 1iqp_A 82 LNASDERGI--------NVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------DAQQALRRTMEMFSSNVRFIL 145 (327)
T ss_dssp EETTCHHHH--------HTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------HHHHHHHHHHHHTTTTEEEEE
T ss_pred eeccccCch--------HHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------HHHHHHHHHHHhcCCCCeEEE
Confidence 665432210 112222222211 14477999999999843 456778888864 5688899
Q ss_pred ecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhh
Q psy14500 166 ATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAID 245 (938)
Q Consensus 166 ~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ 245 (938)
+||.+. .+.+++.+||..+.|++++.++...+++.++.. .++.++++++..++..+.+.+ +.+..
T Consensus 146 ~~~~~~-----~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~------r~~~~ 210 (327)
T 1iqp_A 146 SCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN----EGLELTEEGLQAILYIAEGDM------RRAIN 210 (327)
T ss_dssp EESCGG-----GSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHT----TTCEECHHHHHHHHHHHTTCH------HHHHH
T ss_pred EeCCcc-----ccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHCCCCH------HHHHH
Confidence 998877 789999999999999999999999999877764 477899999999999987766 77888
Q ss_pred HHHHHH
Q psy14500 246 LIDEAA 251 (938)
Q Consensus 246 ll~~a~ 251 (938)
+++.+.
T Consensus 211 ~l~~~~ 216 (327)
T 1iqp_A 211 ILQAAA 216 (327)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
No 49
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.76 E-value=8.7e-18 Score=183.81 Aligned_cols=208 Identities=17% Similarity=0.186 Sum_probs=156.9
Q ss_pred CccccHHHHHHHHHHHh---------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 32 PVIGRDDEIRRAIQVLQ---------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~---------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
+++|++++++.+...+. .....++||+||||||||++|+++|+.+.... .....+++.++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHH
Confidence 69999999888887654 34455799999999999999999999885532 1224578888888
Q ss_pred hhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCC-CCccchhhhhhhhccCC--ceEEEEecChhHHH
Q psy14500 97 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV-EGSIDAGNMLKPELSRG--ELHCIGATTLNEYR 173 (938)
Q Consensus 97 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~-~~~~~~~~~L~~~l~~~--~i~vI~~tn~~~~~ 173 (938)
.+. ..+.|.....+..+|..+. +.||||||+|.+.+.++. ..+.++++.|+..++.+ .+++|++||...+.
T Consensus 109 ~l~--~~~~g~~~~~~~~~~~~~~----~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~ 182 (309)
T 3syl_A 109 DLV--GQYIGHTAPKTKEVLKRAM----GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRME 182 (309)
T ss_dssp GTC--CSSTTCHHHHHHHHHHHHT----TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHH
T ss_pred Hhh--hhcccccHHHHHHHHHhcC----CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHH
Confidence 776 4567877777888887763 459999999999764432 22455777888888654 78999999998777
Q ss_pred HhhhcCHHHHcccc-eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccC--CCchhhhhHHHHH
Q psy14500 174 QYIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR--FMPDKAIDLIDEA 250 (938)
Q Consensus 174 ~~~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~--~~p~~a~~ll~~a 250 (938)
.+..++|+|++||. .+.|++|+.+++..|++.++.. .+..++++++..++..+.+..... +-.+.+..+++.+
T Consensus 183 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 183 NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD----QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 77778999999995 5999999999999999988876 467889999998888765322111 1235556666665
Q ss_pred HH
Q psy14500 251 AA 252 (938)
Q Consensus 251 ~~ 252 (938)
+.
T Consensus 259 ~~ 260 (309)
T 3syl_A 259 RL 260 (309)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 50
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.76 E-value=1.2e-17 Score=177.57 Aligned_cols=206 Identities=19% Similarity=0.293 Sum_probs=150.0
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHh---c---------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14500 22 TEKARLGKLDPVIGRDDEIRRAIQVLQ---R---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 89 (938)
Q Consensus 22 ~~~~~~~~~~~lvG~~~~~~~l~~~l~---~---------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~ 89 (938)
.+++++.+|++++|.++.++.+...+. . ..+.++||+||||||||++|+++++.+ +.+
T Consensus 3 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~ 72 (257)
T 1lv7_A 3 TEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVP 72 (257)
T ss_dssp EECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH----------TCC
T ss_pred CccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCC
Confidence 445678899999999988877766433 1 235679999999999999999999988 567
Q ss_pred EEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC---Ccc---chhhhhhhhcc----CC
Q psy14500 90 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSI---DAGNMLKPELS----RG 159 (938)
Q Consensus 90 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~---~~~~~L~~~l~----~~ 159 (938)
++.++++.+. ..+.|..+..++.+|..+.. ..++++||||+|.+...+... +.. ...+.++..++ ..
T Consensus 73 ~~~i~~~~~~--~~~~~~~~~~~~~~~~~a~~-~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 149 (257)
T 1lv7_A 73 FFTISGSDFV--EMFVGVGASRVRDMFEQAKK-AAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNE 149 (257)
T ss_dssp EEEECSCSST--TSCCCCCHHHHHHHHHHHHT-TCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSS
T ss_pred EEEEeHHHHH--HHhhhhhHHHHHHHHHHHHH-cCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCC
Confidence 7888877665 34567777788899998874 447899999999998755321 111 23333444332 45
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHH-HHHHHHHhhhhccc
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDP-AIVAASELSYRYIS 235 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~-~l~~~~~~s~~~~~ 235 (938)
.+++|++||.++ .+++++.+ ||.. +.++.|+.++|..|++.+..+.. ++++ .+..++..+.+|
T Consensus 150 ~~~vI~~tn~~~-----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~------l~~~~~~~~la~~~~G~-- 216 (257)
T 1lv7_A 150 GIIVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP------LAPDIDAAIIARGTPGF-- 216 (257)
T ss_dssp CEEEEEEESCTT-----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC------BCTTCCHHHHHHTCTTC--
T ss_pred CEEEEEeeCCch-----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC------CCccccHHHHHHHcCCC--
Confidence 799999999987 89999998 9986 99999999999999988776532 2222 234455544442
Q ss_pred cCCCchhhhhHHHHHHHHHHH
Q psy14500 236 DRFMPDKAIDLIDEAAAKIKI 256 (938)
Q Consensus 236 ~~~~p~~a~~ll~~a~~~~~~ 256 (938)
.++....++..++..+..
T Consensus 217 ---~~~dl~~l~~~a~~~a~~ 234 (257)
T 1lv7_A 217 ---SGADLANLVNEAALFAAR 234 (257)
T ss_dssp ---CHHHHHHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHHHHHHH
Confidence 457777788877665543
No 51
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.76 E-value=1.5e-17 Score=172.18 Aligned_cols=198 Identities=25% Similarity=0.289 Sum_probs=151.8
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 98 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l 98 (938)
.+|.++|+|..|++++|+++.++.+..++.....++++|+||||||||++++++++.+.... ....++.++++..
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 79 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE 79 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----GGGGEEEEETTCT
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-----cccceEEeccccc
Confidence 47899999999999999999999999999888777899999999999999999999874321 1334566665432
Q ss_pred hcCccccchHHHHHHHHHHHHHh-----cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhH
Q psy14500 99 LAGTKYRGEFEDRLKKILKEISN-----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNE 171 (938)
Q Consensus 99 ~~~~~~~g~~~~~l~~~~~~a~~-----~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~ 171 (938)
. + ...+...+..... ...+.+|||||+|.+.+ +..+.|...++. ..+.+|++||...
T Consensus 80 ~------~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 80 R------G--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------DAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp T------C--HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred c------C--hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------HHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 2 1 1123333333322 24578999999999843 345567666653 5688889998876
Q ss_pred HHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHH
Q psy14500 172 YRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 251 (938)
Q Consensus 172 ~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 251 (938)
.+++++.+||..+.|++|+.+++..+++..+.. .+..++++++..++..+.+.+ +.+..+++.++
T Consensus 144 -----~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~------r~l~~~l~~~~ 208 (226)
T 2chg_A 144 -----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGDF------RKAINALQGAA 208 (226)
T ss_dssp -----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTCH------HHHHHHHHHHH
T ss_pred -----hcCHHHHHhCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHH
Confidence 789999999999999999999999999877664 466789999999998887765 77777777665
Q ss_pred H
Q psy14500 252 A 252 (938)
Q Consensus 252 ~ 252 (938)
.
T Consensus 209 ~ 209 (226)
T 2chg_A 209 A 209 (226)
T ss_dssp H
T ss_pred h
Confidence 4
No 52
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.75 E-value=6.5e-18 Score=185.62 Aligned_cols=201 Identities=22% Similarity=0.257 Sum_probs=153.8
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 98 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l 98 (938)
.+|+++|+|.+|++++|++..++.+...+.....+++||+||||||||++|+++++.+.... ....++.++++..
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 79 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE 79 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-----HHHHCEEEETTST
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-----ccCCeEEEeCccc
Confidence 47899999999999999999999999998887777899999999999999999999874321 0234566676543
Q ss_pred hcCccccchHHHHHHHHHHHHH-hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhHHHHh
Q psy14500 99 LAGTKYRGEFEDRLKKILKEIS-NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQY 175 (938)
Q Consensus 99 ~~~~~~~g~~~~~l~~~~~~a~-~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~~~~~ 175 (938)
... ......+........ ....+.|+||||+|.+.. +.++.|+..++. ..+++|++||...
T Consensus 80 ~~~----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~L~~~le~~~~~~~~i~~~~~~~---- 143 (319)
T 2chq_A 80 RGI----DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------DAQAALRRTMEMYSKSCRFILSCNYVS---- 143 (319)
T ss_dssp TCT----TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------HHHHTTGGGTSSSSSSEEEEEEESCGG----
T ss_pred cCh----HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------HHHHHHHHHHHhcCCCCeEEEEeCChh----
Confidence 211 111111222211110 113478999999999843 456778888875 5688999999877
Q ss_pred hhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHH
Q psy14500 176 IEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 251 (938)
Q Consensus 176 ~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 251 (938)
.+.+++.+||..+.|++|+.+++..+++.++.+ .++.++++++..++..+.+.+ +.+...++.++
T Consensus 144 -~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~------r~~~~~l~~~~ 208 (319)
T 2chq_A 144 -RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGDF------RKAINALQGAA 208 (319)
T ss_dssp -GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHT----TCCCBCHHHHHHHHHTTTTCH------HHHHHHHHHHH
T ss_pred -hcchHHHhhCeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHH
Confidence 789999999999999999999999999887764 577899999999999888777 77777776654
No 53
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=1.1e-17 Score=186.80 Aligned_cols=203 Identities=20% Similarity=0.254 Sum_probs=152.6
Q ss_pred HhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 17 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 17 ~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
-..+|+++|+|.+|++++|+++.++.+...+.....+++||+||||||||++|+++++.+.... .....+..++++
T Consensus 23 ~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~~ 98 (353)
T 1sxj_D 23 AQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELNAS 98 (353)
T ss_dssp ---CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEECSS
T ss_pred cCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEccc
Confidence 3469999999999999999999999999999888778899999999999999999999874210 002345556554
Q ss_pred hhhcCccccchHHHHHHHHHHHHH---------------hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--C
Q psy14500 97 LLLAGTKYRGEFEDRLKKILKEIS---------------NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 159 (938)
Q Consensus 97 ~l~~~~~~~g~~~~~l~~~~~~a~---------------~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~ 159 (938)
.... .+ .+...+.... ....+.||||||+|.+.+ ..++.|+..++. .
T Consensus 99 ~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------~~~~~Ll~~le~~~~ 162 (353)
T 1sxj_D 99 DERG----IS----IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------DAQSALRRTMETYSG 162 (353)
T ss_dssp SCCC----HH----HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------HHHHHHHHHHHHTTT
T ss_pred cccc----hH----HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------HHHHHHHHHHHhcCC
Confidence 3210 01 1222222211 123456999999999843 455677777763 4
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCC
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 239 (938)
...+|.+||.+. .+.+++.+||..+.|++|+.++...+++..+.. .++.++++++..++..+.+.+
T Consensus 163 ~~~~il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~----- 228 (353)
T 1sxj_D 163 VTRFCLICNYVT-----RIIDPLASQCSKFRFKALDASNAIDRLRFISEQ----ENVKCDDGVLERILDISAGDL----- 228 (353)
T ss_dssp TEEEEEEESCGG-----GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHTSSCH-----
T ss_pred CceEEEEeCchh-----hCcchhhccCceEEeCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH-----
Confidence 577888888876 789999999999999999999999999877654 577899999999999988766
Q ss_pred chhhhhHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKI 254 (938)
Q Consensus 240 p~~a~~ll~~a~~~~ 254 (938)
+.+..+++.++...
T Consensus 229 -r~~~~~l~~~~~~~ 242 (353)
T 1sxj_D 229 -RRGITLLQSASKGA 242 (353)
T ss_dssp -HHHHHHHHHTHHHH
T ss_pred -HHHHHHHHHHHHhc
Confidence 88888888776544
No 54
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=99.74 E-value=3.7e-18 Score=183.84 Aligned_cols=149 Identities=21% Similarity=0.314 Sum_probs=110.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccc
Q psy14500 622 RYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFL 701 (938)
Q Consensus 622 ~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~ 701 (938)
..++++++..++.... +.+..+..-+.++ .+.+.+|||||++++|.++++.+++ ++.+.++|+
T Consensus 28 ~~l~~~~~~~l~~~~~----~il~~e~~l~~~~------------~~i~viGDIHG~~~~L~~ll~~~g~-~~~~~~vfl 90 (330)
T 1fjm_A 28 VQLTENEIRGLCLKSR----EIFLSQPILLELE------------APLKICGDIHGQYYDLLRLFEYGGF-PPESNYLFL 90 (330)
T ss_dssp CCCCHHHHHHHHHHHH----HHHHHSCSEEEEC------------SSEEEECBCTTCHHHHHHHHHHHCS-TTSSCEEEC
T ss_pred CCCCHHHHHHHHHHHH----HHHHhCCCeEeec------------CceEEecCCCCCHHHHHHHHHHhCC-CCcceEEeC
Confidence 3578888888865543 3333333223332 2457899999999999999999997 456889999
Q ss_pred cccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhCCCCHHHHHHHHhcCCce-EE
Q psy14500 702 GDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IY 776 (938)
Q Consensus 702 GD~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~-~~ 776 (938)
||+||||+.+++|+++++.+ +.++++|+||||.++++...+... +....+ .....+.+.+||+.||++ +.
T Consensus 91 GD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~----e~~~~y-~~~l~~~~~~~f~~LPl~~~i 165 (330)
T 1fjm_A 91 GDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYD----ECKRRY-NIKLWKTFTDCFNCLPIAAIV 165 (330)
T ss_dssp SCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHH----HHHHHS-CHHHHHHHHHHHTTCCCEEEE
T ss_pred CCcCCCCCChHHHHHHHHHhhhhcCCceEEecCCchHhhhhhhhhhhh----hhhhhc-cHHHHHHHHHHHHhCCceEEE
Confidence 99999999999999999886 457999999999999876543211 001111 111246789999999996 55
Q ss_pred eCCEEEEecccCcCCC
Q psy14500 777 YKKYLMIHAGVAKQWT 792 (938)
Q Consensus 777 ~~~~~~vHAg~~p~~~ 792 (938)
.+++++||||++|.|.
T Consensus 166 ~~~i~~vHgGl~p~~~ 181 (330)
T 1fjm_A 166 DEKIFCCHGGLSPDLQ 181 (330)
T ss_dssp TTTEEEESSCCCTTCS
T ss_pred cCcEEEEccCCCcccC
Confidence 6789999999999884
No 55
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.73 E-value=1e-16 Score=212.73 Aligned_cols=390 Identities=15% Similarity=0.211 Sum_probs=217.2
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh----------
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---------- 121 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---------- 121 (938)
..++||+||||||||++|+.++... .+..++.++.+..... ..+...+.....
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts~--------~~~~~~i~~~~~~~~~~~g~~~ 1329 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTTT--------EHILSALHRHTNYVTTSKGLTL 1329 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCCH--------HHHHHHHHHHBCCEEETTTEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCCH--------HHHHHHHHHHhhhccccCCccc
Confidence 3799999999999999996655432 1456777776554321 134444444310
Q ss_pred ----cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--------------ceEEEEecChhHHHHhhhcCHHHH
Q psy14500 122 ----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--------------ELHCIGATTLNEYRQYIEKDAAFE 183 (938)
Q Consensus 122 ----~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--------------~i~vI~~tn~~~~~~~~~ld~al~ 183 (938)
.+.++||||||++. +..+..|++...+.|++.++.+ ++.+|+|||++...+...++++++
T Consensus 1330 ~P~~~gk~~VlFiDEinm--p~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1330 LPKSDIKNLVLFCDEINL--PKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp EEBSSSSCEEEEEETTTC--SCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred cCCCCCceEEEEeccccc--ccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Confidence 13357999999995 4445556677888888888753 378999999984223347999999
Q ss_pred cccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHH----HHhhc
Q psy14500 184 RRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI----KIEID 259 (938)
Q Consensus 184 ~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~----~~~~~ 259 (938)
|||..+.++.|+.+++..|+..+....-. ..++.. .++...+ ..++++........ +..+.
T Consensus 1408 Rrf~vi~i~~P~~~~l~~I~~~il~~~l~-----~~~~v~----~~~~~lv------~ati~~y~~v~~~~~~~~k~HY~ 1472 (2695)
T 4akg_A 1408 RHAAILYLGYPSGKSLSQIYEIYYKAIFK-----LVPEFR----SYTEPFA------RASVHLYNECKARYSTGLQSHYL 1472 (2695)
T ss_dssp TTEEEEECCCCTTTHHHHHHHHHHHHHTT-----SSGGGG----GGHHHHH------HHHHHHHHHHHHHSCTTTCTTCC
T ss_pred heeeEEEeCCCCHHHHHHHHHHHHHHHhc-----cCHHHH----HHHHHHH------HHHHHHHHHHHHHcCCccCCCcc
Confidence 99988999999999999999888765321 111110 0000001 11223333322222 11234
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy14500 260 SKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVR-LK 338 (938)
Q Consensus 260 ~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 338 (938)
.++.++..+-+.+..... .....+ ...+...|.+|-.++....-...++...= +-
T Consensus 1473 FnlRDLsrv~qGll~~~~-------~~~~~~-----------------~~~l~rLw~HE~~Rvf~DRLv~~~D~~~f~~~ 1528 (2695)
T 4akg_A 1473 FSPRELTRLVRGVYTAIN-------TGPRQT-----------------LRSLIRLWAYEAWRIFADRLVGVKEKNSFEQL 1528 (2695)
T ss_dssp CCHHHHHHHHHHHHHHHH-------TSSCCC-----------------HHHHHHHHHHHHHHHHTTTCCSSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHhcCc-------hhhhcc-----------------HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 455555544443322110 000011 13456788888887765443332222111 11
Q ss_pred HHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccc--------cccCChHHHHHHHHHhhCCCcccc
Q psy14500 339 INKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLL--------KTKVGSEEIAEIVSRTTGIPVSKI 410 (938)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~i~~~~~~~~~~~~~~~ 410 (938)
+.+.. .+ .+.... .......+++ -..++.+++...+.
T Consensus 1529 l~~~~-------------------~~---~f~~~~---~~~~~~~~~~f~df~~~~Y~~v~~~~l~~~l~---------- 1573 (2695)
T 4akg_A 1529 LYETV-------------------DK---YLPNQD---LGNISSTSLLFSGLLSLDFKEVNKTDLVNFIE---------- 1573 (2695)
T ss_dssp HHHHH-------------------HH---HSCCSC---CCCCSTTTCCEESSSSSSCEECCHHHHHHHHH----------
T ss_pred HHHHH-------------------HH---Hhcccc---hhhhccCCceeeecCCCcceecCHHHHHHHHH----------
Confidence 11100 00 000000 0000000000 01122222221111
Q ss_pred chHHHHHHHHHHH-HhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceE
Q psy14500 411 VQVEREKLLNIEN-LLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESII 489 (938)
Q Consensus 411 ~~~~~~~l~~l~~-~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~ 489 (938)
..+....+ ...-.++=-+++++.+.+..+..+ .|.+++||+|++|+||++++|..|... +..+.
T Consensus 1574 -----~~l~~yn~~~~~m~LVlF~dai~Hi~RI~Ril~-------~p~G~~LLvGvgGsGkqSltrLaa~i~---~~~~f 1638 (2695)
T 4akg_A 1574 -----ERFKTFCDEELEVPMVIHESMVDHILRIDRALK-------QVQGHMMLIGASRTGKTILTRFVAWLN---GLKIV 1638 (2695)
T ss_dssp -----HHHHHHHHHSCCCCCCCCHHHHHHHHHHHHHHH-------SSSEEEEEECTTTSCHHHHHHHHHHHT---TCEEE
T ss_pred -----HHHHHHHhhcCCceeeeHHHHHHHHHHHHHHHc-------CCCCCEEEECCCCCcHHHHHHHHHHHh---CCeeE
Confidence 01111111 122356777888988888877666 567899999999999999999888766 67777
Q ss_pred EeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceec
Q psy14500 490 RIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD 560 (938)
Q Consensus 490 ~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~ 560 (938)
.+.++.-.+..... .+-...+...--+..+.+++|+|.+-..+.+++.+..+|..|.+.+
T Consensus 1639 qi~~~~~Y~~~~f~-----------eDLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~ 1698 (2695)
T 4akg_A 1639 QPKIHRHSNLSDFD-----------MILKKAISDCSLKESRTCLIIDESNILETAFLERMNTLLANADIPD 1698 (2695)
T ss_dssp CCCCCTTCCHHHHH-----------HHHHHHHHHHHHSCCCEEEEEETTTCCSHHHHHHHHHHHHSSSCTT
T ss_pred EEEeeCCCCHHHHH-----------HHHHHHHHHcCCCCCceEEEEeccccccHHHHHHHHHHHccCCCCC
Confidence 77665432211110 0000111122234556899999999999999999999999888754
No 56
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.73 E-value=1.1e-17 Score=183.93 Aligned_cols=188 Identities=23% Similarity=0.356 Sum_probs=135.7
Q ss_pred hccccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
.++|.|.+++++.|.+.+... ..+.. |...+||+||||||||++|+++|..+ +.+|+.++++++.
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~----~prGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIK----PPKGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELI 253 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCC----CCSEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGC
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhh
Confidence 367889999999998887542 12332 22369999999999999999999999 8899999998876
Q ss_pred chhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecC
Q psy14500 498 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDN 561 (938)
Q Consensus 498 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~ 561 (938)
+. |+|..+. +.++...+...+|||||||+|.+.+ ...+.||..++..
T Consensus 254 sk------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~----- 316 (437)
T 4b4t_I 254 QK------------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGF----- 316 (437)
T ss_dssp CS------------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHC-----
T ss_pred hc------------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCc-----
Confidence 53 6666543 4566666777789999999997632 3456666666631
Q ss_pred CCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 562 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 562 ~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
-...++++|+|||.+. .++|+|+. |||..|.|+.++.++..+|+..++..
T Consensus 317 ----~~~~~ViVIaATNrpd------------------------~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~ 368 (437)
T 4b4t_I 317 ----DDRGDVKVIMATNKIE------------------------TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368 (437)
T ss_dssp ----CCSSSEEEEEEESCST------------------------TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT
T ss_pred ----CCCCCEEEEEeCCChh------------------------hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC
Confidence 1235688999999754 37888886 99999999999999999997655432
Q ss_pred HHHHHHccCCeEEEcHHH-HHHHHhhcccccccccccccc
Q psy14500 640 LKNKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 640 ~~~~~~~~~~~l~~~~~~-~~~L~~~~~~~~~~~~dl~~~ 678 (938)
.. +++++ ++.|+.. ...|...||...
T Consensus 369 -------~~----l~~dvdl~~LA~~--T~GfSGADI~~l 395 (437)
T 4b4t_I 369 -------MN----LSEDVNLETLVTT--KDDLSGADIQAM 395 (437)
T ss_dssp -------SC----BCSCCCHHHHHHH--CCSCCHHHHHHH
T ss_pred -------CC----CCCcCCHHHHHHh--CCCCCHHHHHHH
Confidence 22 22221 4556652 234666777765
No 57
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=3.8e-17 Score=179.80 Aligned_cols=197 Identities=19% Similarity=0.253 Sum_probs=154.8
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 98 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l 98 (938)
.+|.++|+|..|++++|++..++.+...+.....+++||+||||+|||++|+++++.+.... ....++.++++..
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-----YADGVLELNASDD 83 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----HHHHEEEECTTSC
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCCEEEecCccc
Confidence 58999999999999999999999999999888777899999999999999999999874321 0234555554321
Q ss_pred hcCccccchHHHHHHHHHHHHHh------cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChh
Q psy14500 99 LAGTKYRGEFEDRLKKILKEISN------NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLN 170 (938)
Q Consensus 99 ~~~~~~~g~~~~~l~~~~~~a~~------~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~ 170 (938)
. + ...++.++..+.. .+.+.|+||||+|.+.. +..+.|+..++. ..+.+|++|+..
T Consensus 84 ~------~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 84 R------G--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------GAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp C------S--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------HHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred c------C--hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------HHHHHHHHHHhccCCCceEEEEeCCh
Confidence 1 1 1235555555441 22378999999999843 456678888864 568888888887
Q ss_pred HHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHH
Q psy14500 171 EYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 171 ~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 250 (938)
. .+.+++.+||..+.|++|+.+++..+++..+.. .++.++++++..++..+++.. +.+..+++.+
T Consensus 148 ~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~~------r~a~~~l~~~ 212 (323)
T 1sxj_B 148 N-----KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL----EDVKYTNDGLEAIIFTAEGDM------RQAINNLQST 212 (323)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTCH------HHHHHHHHHH
T ss_pred h-----hchhHHHhhceEEeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHH
Confidence 6 789999999999999999999999999887764 467899999999999987766 8888888766
Q ss_pred H
Q psy14500 251 A 251 (938)
Q Consensus 251 ~ 251 (938)
+
T Consensus 213 ~ 213 (323)
T 1sxj_B 213 V 213 (323)
T ss_dssp H
T ss_pred H
Confidence 5
No 58
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=2.3e-17 Score=184.13 Aligned_cols=205 Identities=16% Similarity=0.176 Sum_probs=149.3
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHH-hcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC------------
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVL-QRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL------------ 86 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l-~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~------------ 86 (938)
.|+++|||.+|++++|++.+++.+..++ .....++++|+||+|+||||+++++++.+..........
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 6899999999999999999999999988 666667799999999999999999999764321100000
Q ss_pred -------CCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh-------------cCCCeEEEEeCccccccCCCCCCcc
Q psy14500 87 -------SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN-------------NQKDIIIFIDELHTMIGTGKVEGSI 146 (938)
Q Consensus 87 -------~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~-------------~~~~~iL~iDEid~l~~~~~~~~~~ 146 (938)
...++.++.+... . .. ...++..+..+.. ...+.|++|||++.|. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~--~---~~-~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~--------~ 148 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDMG--N---ND-RIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT--------K 148 (354)
T ss_dssp ---CCEECSSEEEECCC---------CC-HHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC--------H
T ss_pred ceeeeecccceEEecHhhcC--C---cc-hHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC--------H
Confidence 0112222221110 0 00 0124444444321 2246799999999973 3
Q ss_pred chhhhhhhhccC--CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCC-HHHH
Q psy14500 147 DAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEIT-DPAI 223 (938)
Q Consensus 147 ~~~~~L~~~l~~--~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~-~~~l 223 (938)
..++.|...++. .+..+|.+|+..+ .+.+++.+||..+.|++|+.+++..+++.++.+ .++.++ ++++
T Consensus 149 ~~~~~L~~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~l 219 (354)
T 1sxj_E 149 DAQAALRRTMEKYSKNIRLIMVCDSMS-----PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN----ERIQLETKDIL 219 (354)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEEESCSC-----SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCEECCSHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCHH-----HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH----cCCCCCcHHHH
Confidence 456677777753 4678888888876 789999999988999999999999999988765 477889 9999
Q ss_pred HHHHHhhhhccccCCCchhhhhHHHHHHHH
Q psy14500 224 VAASELSYRYISDRFMPDKAIDLIDEAAAK 253 (938)
Q Consensus 224 ~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~ 253 (938)
..++..+.+.+ +.+..+++.+...
T Consensus 220 ~~i~~~~~G~~------r~a~~~l~~~~~~ 243 (354)
T 1sxj_E 220 KRIAQASNGNL------RVSLLMLESMALN 243 (354)
T ss_dssp HHHHHHHTTCH------HHHHHHHTHHHHT
T ss_pred HHHHHHcCCCH------HHHHHHHHHHHHh
Confidence 99999998887 9999999887654
No 59
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.72 E-value=1.4e-16 Score=179.03 Aligned_cols=202 Identities=19% Similarity=0.187 Sum_probs=152.5
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC-----------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL----------- 86 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~----------- 86 (938)
.+|.++|+|.+|++++|+++.++.+...+.....++ +||+||||||||++|+++++.+...... ...
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~-~~~~~~~~~~~~~~ 82 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGI-TATPCGVCDNCREI 82 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCS-CSSCCSSSHHHHHH
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCC-CCCCCcccHHHHHH
Confidence 478999999999999999999999999988766555 6999999999999999999988542211 000
Q ss_pred ----CCeEEEEehhhhhcCccccchHHHHHHHHHHHHHh---cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC-
Q psy14500 87 ----SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR- 158 (938)
Q Consensus 87 ----~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~- 158 (938)
...++.++.... .... .++.++..+.. .+++.|+||||+|.+. .+..+.|...++.
T Consensus 83 ~~~~~~~~~~~~~~~~----~~~~----~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~Ll~~le~~ 146 (373)
T 1jr3_A 83 EQGRFVDLIEIDAASR----TKVE----DTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEP 146 (373)
T ss_dssp HTSCCSSCEEEETTCS----CCSS----CHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------HHHHHHHHHHHHSC
T ss_pred hccCCCceEEeccccc----CCHH----HHHHHHHHHhhccccCCeEEEEEECcchhc--------HHHHHHHHHHHhcC
Confidence 012334433210 1111 24555555542 2346799999999983 2456778888865
Q ss_pred -CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccC
Q psy14500 159 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 237 (938)
Q Consensus 159 -~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~ 237 (938)
..+++|++|+... .+.+++.+||..+.|++|+.++...+++.++.+ .++.++++++..++..+++..
T Consensus 147 ~~~~~~Il~~~~~~-----~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G~~--- 214 (373)
T 1jr3_A 147 PEHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGSL--- 214 (373)
T ss_dssp CSSEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSSCH---
T ss_pred CCceEEEEEeCChH-----hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCCCH---
Confidence 5688888888776 789999999988999999999999999887765 477899999999999987766
Q ss_pred CCchhhhhHHHHHHH
Q psy14500 238 FMPDKAIDLIDEAAA 252 (938)
Q Consensus 238 ~~p~~a~~ll~~a~~ 252 (938)
+.+..+++.+..
T Consensus 215 ---r~~~~~l~~~~~ 226 (373)
T 1jr3_A 215 ---RDALSLTDQAIA 226 (373)
T ss_dssp ---HHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHH
Confidence 888888877754
No 60
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.72 E-value=2.7e-17 Score=182.68 Aligned_cols=189 Identities=22% Similarity=0.319 Sum_probs=135.2
Q ss_pred hccccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
.++|.|.+.+++.|.+.+... ..+... ...+||+||||||||++|++||+.+ +.+|+.++++++.
T Consensus 208 ~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~p----prGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~ 280 (467)
T 4b4t_H 208 YSDVGGCKDQIEKLREVVELPLLSPERFATLGIDP----PKGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELV 280 (467)
T ss_dssp CSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCC----CSEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC
T ss_pred HHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCC----CCceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhh
Confidence 357889999999888876431 223322 2369999999999999999999999 8899999998876
Q ss_pred chhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecC
Q psy14500 498 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDN 561 (938)
Q Consensus 498 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~ 561 (938)
+. |+|..+. +.++...+...+|||||||+|.+.. ..++.||..|+..
T Consensus 281 sk------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~----- 343 (467)
T 4b4t_H 281 QK------------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGF----- 343 (467)
T ss_dssp CC------------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSS-----
T ss_pred cc------------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhcc-----
Confidence 53 6666543 4566666777789999999997642 2456677777631
Q ss_pred CCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 562 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 562 ~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
....++++|+|||.+. .++|+|+. |||..|.|+.++.++..+|++..+..
T Consensus 344 ----~~~~~ViVIaATNrpd------------------------~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~ 395 (467)
T 4b4t_H 344 ----DPRGNIKVMFATNRPN------------------------TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS 395 (467)
T ss_dssp ----CCTTTEEEEEECSCTT------------------------SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT
T ss_pred ----CCCCcEEEEeCCCCcc------------------------cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC
Confidence 1335688999999754 37888886 99999999999999999997655432
Q ss_pred HHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccc
Q psy14500 640 LKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 640 ~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
..+.-.++ ++.|+.. ...|...||...
T Consensus 396 -------~~l~~dvd---l~~LA~~--T~GfSGADI~~l 422 (467)
T 4b4t_H 396 -------MSVERGIR---WELISRL--CPNSTGAELRSV 422 (467)
T ss_dssp -------SCBCSSCC---HHHHHHH--CCSCCHHHHHHH
T ss_pred -------CCCCCCCC---HHHHHHH--CCCCCHHHHHHH
Confidence 22111111 4555552 234566777765
No 61
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1.8e-17 Score=185.22 Aligned_cols=188 Identities=18% Similarity=0.294 Sum_probs=134.8
Q ss_pred hccccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
.++|.|.+.+++.|.+.+... ..|.. |...+|||||||||||++|+++|..+ +.+|+.++++++.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~----~prGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIR----APKGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLV 252 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCC----CCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhh
Confidence 467899999999888876432 22332 22369999999999999999999999 8899999998876
Q ss_pred chhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccC-----------H---HHHHHHHHhhcCCceecC
Q psy14500 498 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------S---DVFNILLQILDDGRLTDN 561 (938)
Q Consensus 498 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~---~~~~~Ll~~le~g~~~~~ 561 (938)
.. |+|..+. +.++...+...+|||||||+|.+. . ...+.||..|+.-.
T Consensus 253 ~~------------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~---- 316 (434)
T 4b4t_M 253 QM------------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS---- 316 (434)
T ss_dssp SS------------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC----
T ss_pred hc------------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC----
Confidence 53 6665543 455566666778999999998652 1 24566777777411
Q ss_pred CCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 562 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 562 ~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
...++++|+|||.+.. ++|+|+. |||..|.|+.++.++..+|++.++..
T Consensus 317 -----~~~~ViVIaaTNrp~~------------------------LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (434)
T 4b4t_M 317 -----SDDRVKVLAATNRVDV------------------------LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK 367 (434)
T ss_dssp -----SSCSSEEEEECSSCCC------------------------CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEeCCCchh------------------------cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC
Confidence 2346789999997543 7888876 99999999999999999998766543
Q ss_pred HHHHHHccCCeEEEcHHH-HHHHHhhcccccccccccccc
Q psy14500 640 LKNKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 640 ~~~~~~~~~~~l~~~~~~-~~~L~~~~~~~~~~~~dl~~~ 678 (938)
+ . +++++ ++.|+.. ...|..+||...
T Consensus 368 ~-------~----~~~dvdl~~lA~~--t~G~sGADi~~l 394 (434)
T 4b4t_M 368 M-------T----TDDDINWQELARS--TDEFNGAQLKAV 394 (434)
T ss_dssp S-------C----BCSCCCHHHHHHH--CSSCCHHHHHHH
T ss_pred C-------C----CCCcCCHHHHHHh--CCCCCHHHHHHH
Confidence 2 1 11221 4556652 234566777765
No 62
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=5.1e-17 Score=180.03 Aligned_cols=197 Identities=20% Similarity=0.273 Sum_probs=152.6
Q ss_pred hhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh
Q psy14500 18 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL 97 (938)
Q Consensus 18 ~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~ 97 (938)
..+|+++|||..|++++|++.+++.+...+..+..+|++|+|||||||||+++++++.+.... ....+..++.+.
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-----~~~~~~~~~~~~ 86 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-----YSNMVLELNASD 86 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-----HHHHEEEECTTS
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----ccceEEEEcCcc
Confidence 568999999999999999999999999999888878899999999999999999999884321 012344555432
Q ss_pred hhcCccccchHHHHHHHHHHHHHhc-----CCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChh
Q psy14500 98 LLAGTKYRGEFEDRLKKILKEISNN-----QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLN 170 (938)
Q Consensus 98 l~~~~~~~g~~~~~l~~~~~~a~~~-----~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~ 170 (938)
. .| ...++..+...... .++.|++|||+|.|.. +.++.|+..++. ....+|++||..
T Consensus 87 ~------~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 87 D------RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------AAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp C------CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------HHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred c------cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 1 11 11344444443321 2367999999999843 456778888864 467788888887
Q ss_pred HHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHH
Q psy14500 171 EYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 171 ~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 250 (938)
. .+.+++.+||..+.|++++.++...++..++.. .++.++++++..++.++++.. +++..+++.+
T Consensus 151 ~-----~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~----~~~~i~~~~~~~i~~~s~G~~------r~~~~~l~~~ 215 (340)
T 1sxj_C 151 H-----KLTPALLSQCTRFRFQPLPQEAIERRIANVLVH----EKLKLSPNAEKALIELSNGDM------RRVLNVLQSC 215 (340)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHT----TTCCBCHHHHHHHHHHHTTCH------HHHHHHTTTT
T ss_pred c-----ccchhHHhhceeEeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHH
Confidence 6 789999999999999999999999998877754 477899999999999998877 7777776554
No 63
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.71 E-value=1.2e-18 Score=186.40 Aligned_cols=202 Identities=21% Similarity=0.355 Sum_probs=135.7
Q ss_pred HHhcCCCCCccccHHHHHHHHHHHh------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEE
Q psy14500 24 KARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 91 (938)
Q Consensus 24 ~~~~~~~~~lvG~~~~~~~l~~~l~------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~ 91 (938)
+.++.+|++++|++++++.+...+. ...+.++||+||||||||++|+++|+.+ +.+++
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~ 73 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------HVPFF 73 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH----------TCCCC
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEE
Confidence 3456789999999988877777554 1345679999999999999999999988 44555
Q ss_pred EEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC-------ccchhhhhhhhcc-----CC
Q psy14500 92 LLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG-------SIDAGNMLKPELS-----RG 159 (938)
Q Consensus 92 ~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~-------~~~~~~~L~~~l~-----~~ 159 (938)
.++++.+.. .+.|.....++.+|..+... .++||||||+|.+...+...+ .....+.|+..++ ..
T Consensus 74 ~v~~~~~~~--~~~~~~~~~~~~~~~~a~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 74 SMGGSSFIE--MFVGLGASRVRDLFETAKKQ-APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp CCCSCTTTT--SCSSSCSSSSSTTHHHHHHS-CSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred EechHHHHH--hhcchHHHHHHHHHHHHHhc-CCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 566655442 23333333456677777643 478999999999977542111 1123444555553 23
Q ss_pred ceEEEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcccc
Q psy14500 160 ELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISD 236 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~ 236 (938)
.+++|+|||.++ .+++++.+ ||.. +.|+.|+.++|..+|+.++.......+. .+..++..+.+|
T Consensus 151 ~v~vi~ttn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~-----~~~~la~~~~g~--- 217 (268)
T 2r62_A 151 PVIVLAATNRPE-----ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDV-----NLQEVAKLTAGL--- 217 (268)
T ss_dssp CCEEEECBSCCT-----TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSC-----CTTTTTSSSCSS---
T ss_pred CEEEEEecCCch-----hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCcc-----CHHHHHHHcCCC---
Confidence 589999999987 78999999 9975 9999999999999999877654322222 123344444333
Q ss_pred CCCchhhhhHHHHHHHH
Q psy14500 237 RFMPDKAIDLIDEAAAK 253 (938)
Q Consensus 237 ~~~p~~a~~ll~~a~~~ 253 (938)
.++....+++.++..
T Consensus 218 --~g~dl~~l~~~a~~~ 232 (268)
T 2r62_A 218 --AGADLANIINEAALL 232 (268)
T ss_dssp --CHHHHHHHHHHHHHT
T ss_pred --CHHHHHHHHHHHHHH
Confidence 234666666666543
No 64
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.71 E-value=1.5e-16 Score=167.19 Aligned_cols=202 Identities=18% Similarity=0.186 Sum_probs=149.0
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCC-CcEEEcCCCChHHHHHHHHHHHHHcCCCCCCc------------
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKN-NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL------------ 85 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~-~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~------------ 85 (938)
..|.++|+|..|++++|++..++.+...+.....+ .++|+||||||||++++++++.+.........
T Consensus 11 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (250)
T 1njg_A 11 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 90 (250)
T ss_dssp CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHH
T ss_pred HHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 46899999999999999999999999988876544 58999999999999999999988543211000
Q ss_pred --CCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--
Q psy14500 86 --LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 158 (938)
Q Consensus 86 --~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-- 158 (938)
....++.++... ......+..++..+. ....+.+|||||+|.+. .+..+.|...++.
T Consensus 91 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~--------~~~~~~l~~~l~~~~ 154 (250)
T 1njg_A 91 QGRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEEPP 154 (250)
T ss_dssp TTCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSC--------HHHHHHHHHHHHSCC
T ss_pred ccCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECccccc--------HHHHHHHHHHHhcCC
Confidence 001223332211 011223455555443 12347899999999983 2455667777764
Q ss_pred CceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCC
Q psy14500 159 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238 (938)
Q Consensus 159 ~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 238 (938)
..+.+|++|+... .+++++.+|+..+.|++++.++...+++..+.. .+..++++++..++..+.+..
T Consensus 155 ~~~~~i~~t~~~~-----~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~~---- 221 (250)
T 1njg_A 155 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGSL---- 221 (250)
T ss_dssp TTEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTTCH----
T ss_pred CceEEEEEeCChH-----hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5788899998876 789999999988999999999999999887764 467889999999999887654
Q ss_pred CchhhhhHHHHHH
Q psy14500 239 MPDKAIDLIDEAA 251 (938)
Q Consensus 239 ~p~~a~~ll~~a~ 251 (938)
+.+..+++.++
T Consensus 222 --~~~~~~~~~~~ 232 (250)
T 1njg_A 222 --RDALSLTDQAI 232 (250)
T ss_dssp --HHHHHHHHHHH
T ss_pred --HHHHHHHHHHH
Confidence 88888887764
No 65
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=1.4e-17 Score=194.58 Aligned_cols=201 Identities=20% Similarity=0.196 Sum_probs=146.3
Q ss_pred hhhHHHHHhcCCCCCccccHHHHHHHHHHHhc-----------------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCC
Q psy14500 18 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQR-----------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGE 80 (938)
Q Consensus 18 ~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~-----------------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~ 80 (938)
...|+++|+|.+|++++|+++.++.+..++.. ...+++||+||||||||++|+++|+.+
T Consensus 26 ~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---- 101 (516)
T 1sxj_A 26 DKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---- 101 (516)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT----
T ss_pred CCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc----
Confidence 45799999999999999999999999998875 134689999999999999999999998
Q ss_pred CCCCcCCCeEEEEehhhhhcCccccchHHHH---------HHHHHHHH----HhcCCCeEEEEeCccccccCCCCCCccc
Q psy14500 81 VPNSLLSKKILLLDIALLLAGTKYRGEFEDR---------LKKILKEI----SNNQKDIIIFIDELHTMIGTGKVEGSID 147 (938)
Q Consensus 81 ~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~---------l~~~~~~a----~~~~~~~iL~iDEid~l~~~~~~~~~~~ 147 (938)
++.++.++++...... . .... +..+|..+ .....+.||||||+|.+.... +.
T Consensus 102 ------~~~~i~in~s~~~~~~--~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~-----~~ 166 (516)
T 1sxj_A 102 ------GYDILEQNASDVRSKT--L--LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD-----RG 166 (516)
T ss_dssp ------TCEEEEECTTSCCCHH--H--HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----TT
T ss_pred ------CCCEEEEeCCCcchHH--H--HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----HH
Confidence 7788888876543110 0 0000 11112111 122457899999999996532 23
Q ss_pred hhhhhhhhccCCceEEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHH
Q psy14500 148 AGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAAS 227 (938)
Q Consensus 148 ~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~ 227 (938)
..+.|...++.....+|++||.... ..-+++.+|+..+.|++|+.+++..+++.++.+ .++.++++++..++
T Consensus 167 ~l~~L~~~l~~~~~~iIli~~~~~~----~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~----~~~~i~~~~l~~la 238 (516)
T 1sxj_A 167 GVGQLAQFCRKTSTPLILICNERNL----PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR----EKFKLDPNVIDRLI 238 (516)
T ss_dssp HHHHHHHHHHHCSSCEEEEESCTTS----STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHH
T ss_pred HHHHHHHHHHhcCCCEEEEEcCCCC----ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHH
Confidence 4456777776655555555554321 122457788888999999999999999887764 46789999999999
Q ss_pred HhhhhccccCCCchhhhhHHHHHH
Q psy14500 228 ELSYRYISDRFMPDKAIDLIDEAA 251 (938)
Q Consensus 228 ~~s~~~~~~~~~p~~a~~ll~~a~ 251 (938)
..+.+.+ +.++.+++.++
T Consensus 239 ~~s~Gdi------R~~i~~L~~~~ 256 (516)
T 1sxj_A 239 QTTRGDI------RQVINLLSTIS 256 (516)
T ss_dssp HHTTTCH------HHHHHHHTHHH
T ss_pred HHcCCcH------HHHHHHHHHHH
Confidence 9988877 77888776554
No 66
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.70 E-value=4.5e-17 Score=182.19 Aligned_cols=189 Identities=23% Similarity=0.369 Sum_probs=135.9
Q ss_pred hccccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
.++|.|.+.+++.+.+.+... ..+.. |...+||+||||||||++|+++|+.+ +.+|+.++++++.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~----~prGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK----PPKGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIV 252 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCC----CCCEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTC
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCC----CCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhc
Confidence 367889999999888887542 12332 23369999999999999999999999 8899999998876
Q ss_pred chhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecC
Q psy14500 498 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDN 561 (938)
Q Consensus 498 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~ 561 (938)
+. |+|..+. +.++...+...+|||||||+|.+.+ .+.+.||..|+...
T Consensus 253 sk------------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---- 316 (437)
T 4b4t_L 253 DK------------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD---- 316 (437)
T ss_dssp CS------------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS----
T ss_pred cc------------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc----
Confidence 53 6665543 4556666777889999999997632 34677888887411
Q ss_pred CCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 562 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 562 ~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
...++++|+|||.+. .++|+|+. |||..|.|+.++.++..+|++.++..
T Consensus 317 -----~~~~vivI~ATNrp~------------------------~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (437)
T 4b4t_L 317 -----NLGQTKIIMATNRPD------------------------TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK 367 (437)
T ss_dssp -----CTTSSEEEEEESSTT------------------------SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT
T ss_pred -----CCCCeEEEEecCCch------------------------hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC
Confidence 235678999999754 37788874 69999999999999999997665543
Q ss_pred HHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccc
Q psy14500 640 LKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 640 ~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
....-.++ ++.|+. ....|...||...
T Consensus 368 -------~~~~~d~d---l~~lA~--~t~G~sGADi~~l 394 (437)
T 4b4t_L 368 -------VKKTGEFD---FEAAVK--MSDGFNGADIRNC 394 (437)
T ss_dssp -------SCBCSCCC---HHHHHH--TCCSCCHHHHHHH
T ss_pred -------CCCCcccC---HHHHHH--hCCCCCHHHHHHH
Confidence 11111111 455665 2344666787765
No 67
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.70 E-value=5.7e-17 Score=178.56 Aligned_cols=188 Identities=24% Similarity=0.252 Sum_probs=141.1
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHhc-----CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 22 TEKARLGKLDPVIGRDDEIRRAIQVLQR-----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 22 ~~~~~~~~~~~lvG~~~~~~~l~~~l~~-----~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
.++|+|.+|++++|++..++.+...+.. ....++||+||||||||++|+++++.+ +.+++.+++.
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~ 72 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGP 72 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTT
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 4678999999999999998888887652 456789999999999999999999988 5677777765
Q ss_pred hhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-----------------
Q psy14500 97 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG----------------- 159 (938)
Q Consensus 97 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~----------------- 159 (938)
.+.. ...+...+... ...+.+|||||++.+.. ..++.|...++..
T Consensus 73 ~~~~--------~~~l~~~l~~~--~~~~~~l~lDEi~~l~~--------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~ 134 (324)
T 1hqc_A 73 AIEK--------PGDLAAILANS--LEEGDILFIDEIHRLSR--------QAEEHLYPAMEDFVMDIVIGQGPAARTIRL 134 (324)
T ss_dssp TCCS--------HHHHHHHHTTT--CCTTCEEEETTTTSCCH--------HHHHHHHHHHHHSEEEECCSSSSSCCCEEE
T ss_pred ccCC--------hHHHHHHHHHh--ccCCCEEEEECCccccc--------chHHHHHHHHHhhhhHHhcccccccccccc
Confidence 4421 11222333221 24466999999999843 3455566665432
Q ss_pred ---ceEEEEecChhHHHHhhhcCHHHHcccc-eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccc
Q psy14500 160 ---ELHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 235 (938)
Q Consensus 160 ---~i~vI~~tn~~~~~~~~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~ 235 (938)
.+++|++||.+. .+++++.+||. .+.|++|+.+++..+++.++.. .+..++++++..++..+.++.
T Consensus 135 ~~~~~~~i~~t~~~~-----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~~- 204 (324)
T 1hqc_A 135 ELPRFTLIGATTRPG-----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL----LGVRITEEAALEIGRRSRGTM- 204 (324)
T ss_dssp ECCCCEEEEEESCCS-----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHSCSCH-
T ss_pred CCCCEEEEEeCCCcc-----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCCH-
Confidence 478999999887 78899999995 6999999999999999887765 367799999999998876554
Q ss_pred cCCCchhhhhHHHHHHH
Q psy14500 236 DRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 236 ~~~~p~~a~~ll~~a~~ 252 (938)
+.+..+++.+..
T Consensus 205 -----r~l~~~l~~~~~ 216 (324)
T 1hqc_A 205 -----RVAKRLFRRVRD 216 (324)
T ss_dssp -----HHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHH
Confidence 777777666543
No 68
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.70 E-value=2.4e-16 Score=176.87 Aligned_cols=207 Identities=18% Similarity=0.267 Sum_probs=144.0
Q ss_pred hhHHHHHhcCC-CCCccccHHHHHH---HHHHHhcCCC--CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 19 IDLTEKARLGK-LDPVIGRDDEIRR---AIQVLQRRSK--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 19 ~~l~~~~~~~~-~~~lvG~~~~~~~---l~~~l~~~~~--~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
..+.++++|.. |+++||++..++. +...+..... .++||+||||||||++|+++++.+.. ..+++.
T Consensus 31 l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------~~~~~~ 102 (368)
T 3uk6_A 31 LGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP--------DTPFTA 102 (368)
T ss_dssp CCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS--------SCCEEE
T ss_pred cCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--------cCCccc
Confidence 35567889998 9999999988766 4445544433 48999999999999999999999832 124444
Q ss_pred EehhhhhcC-----------------------------------------------ccccchHHHHHHHHHHHHHh----
Q psy14500 93 LDIALLLAG-----------------------------------------------TKYRGEFEDRLKKILKEISN---- 121 (938)
Q Consensus 93 ~~~~~l~~~-----------------------------------------------~~~~g~~~~~l~~~~~~a~~---- 121 (938)
+++..+... ....|+....++..+..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 182 (368)
T 3uk6_A 103 IAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWRE 182 (368)
T ss_dssp EEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhh
Confidence 443331100 01112223344445444331
Q ss_pred cCC----CeEEEEeCccccccCCCCCCccchhhhhhhhccCC--ceEEEEec---------C--hhHHHHhhhcCHHHHc
Q psy14500 122 NQK----DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGAT---------T--LNEYRQYIEKDAAFER 184 (938)
Q Consensus 122 ~~~----~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~i~vI~~t---------n--~~~~~~~~~ld~al~~ 184 (938)
.+. |.||||||+|.|. .+.++.|...++.. .++++++. + .+. .+++++++
T Consensus 183 ~g~~~~~~~vl~IDEi~~l~--------~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~-----~l~~~l~s 249 (368)
T 3uk6_A 183 EGKAEIIPGVLFIDEVHMLD--------IESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPH-----GIPIDLLD 249 (368)
T ss_dssp HTC---CBCEEEEESGGGSB--------HHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEET-----TCCHHHHT
T ss_pred hccccccCceEEEhhccccC--------hHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcc-----cCCHHHHh
Confidence 121 4699999999984 35667787777654 33333332 1 233 78999999
Q ss_pred ccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhh-hccccCCCchhhhhHHHHHHHHHHH
Q psy14500 185 RFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSY-RYISDRFMPDKAIDLIDEAAAKIKI 256 (938)
Q Consensus 185 Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~-~~~~~~~~p~~a~~ll~~a~~~~~~ 256 (938)
||..+.|++|+.+++..|++..+.. .++.++++++..++..+. +.. +.+..+++.++..+..
T Consensus 250 R~~~i~~~~~~~~e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~G~~------r~~~~ll~~a~~~A~~ 312 (368)
T 3uk6_A 250 RLLIVSTTPYSEKDTKQILRIRCEE----EDVEMSEDAYTVLTRIGLETSL------RYAIQLITAASLVCRK 312 (368)
T ss_dssp TEEEEEECCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHHSCH------HHHHHHHHHHHHHHHH
T ss_pred hccEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcCCCH------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999887764 467899999999999987 555 9999999998776543
No 69
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.70 E-value=2.1e-16 Score=172.78 Aligned_cols=206 Identities=18% Similarity=0.304 Sum_probs=142.4
Q ss_pred CccccHHHHHHHHHHHhc--------------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh
Q psy14500 32 PVIGRDDEIRRAIQVLQR--------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL 97 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~--------------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~ 97 (938)
.++|++++++.+...+.. ..+.++||+||||||||++|+++++.+ +.+++.++++.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~ 85 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATK 85 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchh
Confidence 689999999999887754 456899999999999999999999998 67888899877
Q ss_pred hhcCccccch-HHHHHHHHHHHH----HhcCCCeEEEEeCccccccCCCCCCcc----chhhhhhhhccCC---------
Q psy14500 98 LLAGTKYRGE-FEDRLKKILKEI----SNNQKDIIIFIDELHTMIGTGKVEGSI----DAGNMLKPELSRG--------- 159 (938)
Q Consensus 98 l~~~~~~~g~-~~~~l~~~~~~a----~~~~~~~iL~iDEid~l~~~~~~~~~~----~~~~~L~~~l~~~--------- 159 (938)
+... .+.|. ....++.++..+ .....+.||||||+|.+.+.....+.. .+++.|+..++..
T Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~ 164 (310)
T 1ofh_A 86 FTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMV 164 (310)
T ss_dssp GSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred cccC-CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccc
Confidence 6531 23332 223355554422 111124599999999997754322211 1356777777654
Q ss_pred ---ceEEEEecC----hhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHh----hhhhhh-----cccCCCCCHHH
Q psy14500 160 ---ELHCIGATT----LNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRG----LQKKYE-----VHHGVEITDPA 222 (938)
Q Consensus 160 ---~i~vI~~tn----~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~----~~~~~~-----~~~~~~i~~~~ 222 (938)
.+++|++++ .+. .+++++.+||.. +.|++|+.+++..|++. +...+. ....+.+++++
T Consensus 165 ~~~~~~~i~~~~~~~~~~~-----~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a 239 (310)
T 1ofh_A 165 KTDHILFIASGAFQVARPS-----DLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDA 239 (310)
T ss_dssp ECTTCEEEEEECCSSSCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHH
T ss_pred cCCcEEEEEcCCcccCCcc-----cCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHH
Confidence 678888853 343 789999999985 99999999999999983 332221 11225789999
Q ss_pred HHHHHHhhhhcc--ccCCCchhhhhHHHHHHHH
Q psy14500 223 IVAASELSYRYI--SDRFMPDKAIDLIDEAAAK 253 (938)
Q Consensus 223 l~~~~~~s~~~~--~~~~~p~~a~~ll~~a~~~ 253 (938)
++.++..+.... ...+-++.+..+++.+...
T Consensus 240 ~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~ 272 (310)
T 1ofh_A 240 VKKIAEAAFRVNEKTENIGARRLHTVMERLMDK 272 (310)
T ss_dssp HHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHH
T ss_pred HHHHHHHhhhhcccccccCcHHHHHHHHHHHHh
Confidence 999998873210 0123347777777776544
No 70
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.69 E-value=7.1e-17 Score=180.38 Aligned_cols=188 Identities=22% Similarity=0.356 Sum_probs=134.8
Q ss_pred hccccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
.++|.|.+.+++.+.+.+... ..|...| ..+||+||||||||++|+++|+.+ +.+|+.++++++.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~p----rGiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPP----RGVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFV 243 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----CEEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTC
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----ceEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhh
Confidence 467889999999888877532 1233222 369999999999999999999999 8899999998876
Q ss_pred chhhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccC--------------HHHHHHHHHhhcCCceecC
Q psy14500 498 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN--------------SDVFNILLQILDDGRLTDN 561 (938)
Q Consensus 498 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~--------------~~~~~~Ll~~le~g~~~~~ 561 (938)
+. |+|..+. +.++...+...+||+||||+|.+. ..+.+.||..|+.-.
T Consensus 244 ~~------------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~---- 307 (428)
T 4b4t_K 244 HK------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD---- 307 (428)
T ss_dssp CS------------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC----
T ss_pred cc------------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC----
Confidence 43 6665543 455666677778999999998642 246788888887411
Q ss_pred CCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEcc-CCCHHHHHHHHHHHHH
Q psy14500 562 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFR-YLNRKNILSIANIQLN 638 (938)
Q Consensus 562 ~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~-~l~~e~~~~i~~~~l~ 638 (938)
...++++|+|||.+. .++|+|+. |||..|.|+ +++.++...|+...+.
T Consensus 308 -----~~~~v~vI~aTN~~~------------------------~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~ 358 (428)
T 4b4t_K 308 -----QSTNVKVIMATNRAD------------------------TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS 358 (428)
T ss_dssp -----SSCSEEEEEEESCSS------------------------SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEecCChh------------------------hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 235688999999754 37888986 999999997 6788888888765543
Q ss_pred HHHHHHHccCCeEEEcHHH-HHHHHhhcccccccccccccc
Q psy14500 639 ILKNKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 639 ~~~~~~~~~~~~l~~~~~~-~~~L~~~~~~~~~~~~dl~~~ 678 (938)
. .. +++++ ++.|+.. ...|..+||...
T Consensus 359 ~-------~~----l~~~~dl~~lA~~--t~G~sgadi~~l 386 (428)
T 4b4t_K 359 K-------MS----LAPEADLDSLIIR--NDSLSGAVIAAI 386 (428)
T ss_dssp S-------SC----BCTTCCHHHHHHH--TTTCCHHHHHHH
T ss_pred C-------CC----CCcccCHHHHHHH--CCCCCHHHHHHH
Confidence 2 12 22221 4556652 234566777765
No 71
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.69 E-value=6.2e-16 Score=171.34 Aligned_cols=190 Identities=16% Similarity=0.202 Sum_probs=141.4
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++|++.+++.+...+...... ..+..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR----NECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEKS------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT----TSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCSH-------
T ss_pred HHhCChHHHHHHHHHHHHHHHhc----CCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccch-------
Confidence 56899999999999999866421 1233479999999999999999999987 778998888765322
Q ss_pred CCCCCCccccccchhHHHH-HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCC-------CceeecCCeEEEEecC
Q psy14500 507 GAPPGYIGYEEGGYLTEIV-RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-------GRTINFRNTIIVMTSN 578 (938)
Q Consensus 507 g~~~~~~g~~~~~~l~~~~-~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~-------g~~~~~~~~iiI~ttn 578 (938)
+.+...+ ..+.+++||||||+.+++..++.|++.++++.+.... ...++..++++|++||
T Consensus 95 ------------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn 162 (338)
T 3pfi_A 95 ------------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT 162 (338)
T ss_dssp ------------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES
T ss_pred ------------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC
Confidence 1222333 2356789999999999999999999999987764322 1223334688999999
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHH
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 658 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 658 (938)
.. ..+.+++++||+.++.|++++.+++..++...+.. .+ +.++++++
T Consensus 163 ~~------------------------~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~-------~~--~~~~~~~~ 209 (338)
T 3pfi_A 163 RA------------------------GMLSNPLRDRFGMQFRLEFYKDSELALILQKAALK-------LN--KTCEEKAA 209 (338)
T ss_dssp CG------------------------GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------TT--CEECHHHH
T ss_pred Cc------------------------cccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh-------cC--CCCCHHHH
Confidence 62 24789999999999999999999999987655432 23 67899999
Q ss_pred HHHHhhcccccccccccccc
Q psy14500 659 KKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 659 ~~L~~~~~~~~~~~~dl~~~ 678 (938)
+.|+. . |...++.+.+.
T Consensus 210 ~~l~~-~--~~G~~r~l~~~ 226 (338)
T 3pfi_A 210 LEIAK-R--SRSTPRIALRL 226 (338)
T ss_dssp HHHHH-T--TTTCHHHHHHH
T ss_pred HHHHH-H--HCcCHHHHHHH
Confidence 99987 2 33444555444
No 72
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.69 E-value=3.5e-16 Score=166.91 Aligned_cols=204 Identities=21% Similarity=0.275 Sum_probs=137.3
Q ss_pred hcCCCCCccccHHHHHHHHHHHh-------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~-------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
..-+|+++.|.+++.+.+...+. -..+.+++|+||||||||||++++|..+ +..++.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~ 74 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES----------GLNFIS 74 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEE
Confidence 34578999999988887766431 1334569999999999999999999987 567788
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC---Cccchhhhhhhhcc----CCceEEEE
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSIDAGNMLKPELS----RGELHCIG 165 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~~~~~L~~~l~----~~~i~vI~ 165 (938)
++...+. ..+.|+.+..+..+|+.+.. ..|+++|+||++.+...+... ......+.+...|+ +..+++++
T Consensus 75 i~g~~l~--~~~~~~~~~~i~~vf~~a~~-~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia 151 (274)
T 2x8a_A 75 VKGPELL--NMYVGESERAVRQVFQRAKN-SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMA 151 (274)
T ss_dssp EETTTTC--SSTTHHHHHHHHHHHHHHHH-TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEE
T ss_pred EEcHHHH--hhhhhHHHHHHHHHHHHHHh-cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEe
Confidence 8876665 35678888889999998864 448899999999987643221 11223344444453 34678899
Q ss_pred ecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCC-CHHHHHHHHHhhhhccccCCCch
Q psy14500 166 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEI-TDPAIVAASELSYRYISDRFMPD 241 (938)
Q Consensus 166 ~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i-~~~~l~~~~~~s~~~~~~~~~p~ 241 (938)
+||.++ .+|++++| ||+. |+++.|+.++|..||+.+.+... ...+ .+..+..++..+. ...+.++
T Consensus 152 ~tn~p~-----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~---~~~~~~~~~~~~la~~~~---~~g~sga 220 (274)
T 2x8a_A 152 ATNRPD-----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGT---KPPLDADVNLEAIAGDLR---CDCYTGA 220 (274)
T ss_dssp EESCGG-----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTB---TTBBCTTCCHHHHHTCSG---GGSCCHH
T ss_pred ecCChh-----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhccc---CCCCccccCHHHHHHhhc---cCCcCHH
Confidence 999998 78999999 9996 99999999999999998775311 1111 1222344444321 1234567
Q ss_pred hhhhHHHHHHHH
Q psy14500 242 KAIDLIDEAAAK 253 (938)
Q Consensus 242 ~a~~ll~~a~~~ 253 (938)
+...++++|+..
T Consensus 221 dl~~l~~~a~~~ 232 (274)
T 2x8a_A 221 DLSALVREASIC 232 (274)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777777777644
No 73
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.68 E-value=3e-16 Score=172.19 Aligned_cols=194 Identities=16% Similarity=0.289 Sum_probs=140.7
Q ss_pred ccccChHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~---~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.++|++.+++.+...+..... .......|..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~---- 90 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK---- 90 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHTT----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhhc----
Confidence 5688999999999888843211 111223444589999999999999999999998 779999998776432
Q ss_pred hhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 504 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
+.|..+. +.++...+...++||||||||.+.+ .+++.|+..++.-. ....+
T Consensus 91 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 154 (322)
T 3eie_A 91 --------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQG 154 (322)
T ss_dssp --------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG--------TSCCC
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc--------ccCCc
Confidence 3333222 3345555667779999999998854 56888999887411 12346
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
+++|+|||.+. .+++.+++||+..+.+++++.++..+|+...+. ...
T Consensus 155 v~vi~atn~~~------------------------~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~-------~~~-- 201 (322)
T 3eie_A 155 VLVLGATNIPW------------------------QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG-------DTP-- 201 (322)
T ss_dssp EEEEEEESCGG------------------------GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHT-------TCC--
T ss_pred eEEEEecCChh------------------------hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhc-------cCC--
Confidence 78889999643 378899999999999999999999999766443 222
Q ss_pred EEEcHHHHHHHHhhcccccccccccccc
Q psy14500 651 LKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 651 l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
..+++..++.|+.. ...|..+||...
T Consensus 202 ~~~~~~~l~~la~~--t~g~sg~di~~l 227 (322)
T 3eie_A 202 CVLTKEDYRTLGAM--TEGYSGSDIAVV 227 (322)
T ss_dssp CCCCHHHHHHHHHT--TTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHH--cCCCCHHHHHHH
Confidence 45678888999873 344566777655
No 74
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=99.68 E-value=1.2e-16 Score=171.23 Aligned_cols=151 Identities=21% Similarity=0.324 Sum_probs=109.7
Q ss_pred cCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCccccccc
Q psy14500 622 RYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFL 701 (938)
Q Consensus 622 ~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~ 701 (938)
..++++++..++.....- +..+..-+.++ .+.+.+|||||+++++.++++..++. +.+.++|+
T Consensus 21 ~~l~~~~~~~l~~~~~~i----l~~e~~~~~~~------------~~i~viGDIHG~~~~L~~ll~~~~~~-~~~~~vfl 83 (309)
T 2ie4_C 21 KQLSESQVKSLCEKAKEI----LTKESNVQEVR------------CPVTVCGDVHGQFHDLMELFRIGGKS-PDTNYLFM 83 (309)
T ss_dssp CCCCHHHHHHHHHHHHHH----HHHSCTTEEEC------------SSEEEECCCTTCHHHHHHHHHHHCCT-TTSCEEEC
T ss_pred CCCCHHHHHHHHHHHHHH----HHhCCCEEecc------------CCEEEEecCCCCHHHHHHHHHHcCCC-CCCEEEEe
Confidence 467888888886554433 33332112222 34578999999999999999998874 55789999
Q ss_pred cccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhCCCCHHHHHHHHhcCCceE-E
Q psy14500 702 GDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAI-Y 776 (938)
Q Consensus 702 GD~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~-~ 776 (938)
||++|||+.+.+|+++++.+ +.++++|+||||.+++....+.. .+....+......+.+.+|++.||+.. .
T Consensus 84 GD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~----~e~~~~yg~~~l~~~~~~~~~~LPl~~~i 159 (309)
T 2ie4_C 84 GDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFY----DECLRKYGNANVWKYFTDLFDYLPLTALV 159 (309)
T ss_dssp SCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSTTGGGTSSHH----HHHHHHSSSTHHHHHHHHHTTSSCSCEEE
T ss_pred CCccCCCCChHHHHHHHHHHHhhCCCcEEEEeCCCCHHHHhhhhhhh----HHHHhhcccHHHHHHHHHHHHhCCceEEE
Confidence 99999999999999999987 45789999999998876332211 111112211223467889999999986 4
Q ss_pred eCCEEEEecccCcCCCH
Q psy14500 777 YKKYLMIHAGVAKQWTA 793 (938)
Q Consensus 777 ~~~~~~vHAg~~p~~~~ 793 (938)
.+++++||||++|.+..
T Consensus 160 ~~~il~vHgGl~p~~~~ 176 (309)
T 2ie4_C 160 DGQIFCLHGGLSPSIDT 176 (309)
T ss_dssp TTTEEECSSCCCTTCCS
T ss_pred cCcEEEECCCCCCcccC
Confidence 67999999999998864
No 75
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.68 E-value=1.2e-16 Score=153.59 Aligned_cols=143 Identities=12% Similarity=0.088 Sum_probs=111.7
Q ss_pred cccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcC
Q psy14500 428 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 507 (938)
Q Consensus 428 ~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 507 (938)
.++|++.+++.+...++..... ..++||+||||||||++|++|++.....+.+++ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~-------~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET-------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC-------CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--------
Confidence 5789999999999988765421 237999999999999999999998877788999 999876542
Q ss_pred CCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhh
Q psy14500 508 APPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 587 (938)
Q Consensus 508 ~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 587 (938)
......+..+.+++||||||+.+++..|..|+.+|+. ...++.+|+|||.+...+..
T Consensus 66 -----------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~-----------~~~~~~~I~~t~~~~~~~~~- 122 (145)
T 3n70_A 66 -----------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQ-----------EHRPFRLIGIGDTSLVELAA- 122 (145)
T ss_dssp -----------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHS-----------SSCSSCEEEEESSCHHHHHH-
T ss_pred -----------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhh-----------cCCCEEEEEECCcCHHHHHH-
Confidence 1233455556678999999999999999999999954 23456799999987664433
Q ss_pred hcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCC
Q psy14500 588 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN 625 (938)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~ 625 (938)
...|+++|++|+.. .|.+|||.
T Consensus 123 ----------------~~~~~~~L~~rl~~~~i~lPpLR 145 (145)
T 3n70_A 123 ----------------SNHIIAELYYCFAMTQIACLPLT 145 (145)
T ss_dssp ----------------HSCCCHHHHHHHHHHEEECCCCC
T ss_pred ----------------cCCCCHHHHHHhcCCEEeCCCCC
Confidence 45799999999865 68888873
No 76
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.67 E-value=3.7e-16 Score=172.54 Aligned_cols=211 Identities=18% Similarity=0.159 Sum_probs=148.5
Q ss_pred HhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 17 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 17 ~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
+..++.++++|..++.++|+++.++.+...+... .++||+||||||||++|+++++.+ +.+++.+++.
T Consensus 13 ~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i~~~ 80 (331)
T 2r44_A 13 YYRNKIKEVIDEVGKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRIQFT 80 (331)
T ss_dssp HHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEEECC
T ss_pred HHHHHHHHHHHHhccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEecC
Confidence 4467899999999999999999999998887764 699999999999999999999988 5566666652
Q ss_pred h------hhcCccc---cchHHHHHHHHHHHHHhcCC---CeEEEEeCccccccCCCCCCccchhhhhhhhccCC-----
Q psy14500 97 L------LLAGTKY---RGEFEDRLKKILKEISNNQK---DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG----- 159 (938)
Q Consensus 97 ~------l~~~~~~---~g~~~~~l~~~~~~a~~~~~---~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~----- 159 (938)
. +.....+ .|.+ ....+ ..||||||++.+. ...++.|...++.+
T Consensus 81 ~~~~~~~l~g~~~~~~~~~~~-----------~~~~g~l~~~vl~iDEi~~~~--------~~~~~~Ll~~l~~~~~~~~ 141 (331)
T 2r44_A 81 PDLLPSDLIGTMIYNQHKGNF-----------EVKKGPVFSNFILADEVNRSP--------AKVQSALLECMQEKQVTIG 141 (331)
T ss_dssp TTCCHHHHHEEEEEETTTTEE-----------EEEECTTCSSEEEEETGGGSC--------HHHHHHHHHHHHHSEEEET
T ss_pred CCCChhhcCCceeecCCCCce-----------EeccCcccccEEEEEccccCC--------HHHHHHHHHHHhcCceeeC
Confidence 1 1110000 0000 00011 2599999999983 34566777777533
Q ss_pred --------ceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhh------------------c
Q psy14500 160 --------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYE------------------V 212 (938)
Q Consensus 160 --------~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~------------------~ 212 (938)
.+++|+|+|+.++.....+++++++||.. +.++.|+.+++..|++....... .
T Consensus 142 g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~ 221 (331)
T 2r44_A 142 DTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNE 221 (331)
T ss_dssp TEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHH
T ss_pred CEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHH
Confidence 46788888876543333589999999995 99999999999999987654311 1
Q ss_pred ccCCCCCHHHHHHHHHhhhhcccc--------------CCCchhhhhHHHHHHHHHHHhh
Q psy14500 213 HHGVEITDPAIVAASELSYRYISD--------------RFMPDKAIDLIDEAAAKIKIEI 258 (938)
Q Consensus 213 ~~~~~i~~~~l~~~~~~s~~~~~~--------------~~~p~~a~~ll~~a~~~~~~~~ 258 (938)
..++.++++++..++.++...... ...++.+..++..+.+.+....
T Consensus 222 ~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g 281 (331)
T 2r44_A 222 INKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNN 281 (331)
T ss_dssp HHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcC
Confidence 136778888888888766432211 2356777777777766655543
No 77
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.67 E-value=3.1e-16 Score=169.31 Aligned_cols=157 Identities=15% Similarity=0.163 Sum_probs=110.4
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---hcCCCe
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDI 126 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~ 126 (938)
..+.++||+||||||||++|+++|+.+ +.+++.++++.+. ..+.|..+..++.+|..+. +...++
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 101 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAAEIIRKGNMC 101 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHH--CC---HHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhh--hccCchhHHHHHHHHHHHHHHHhcCCCe
Confidence 344578999999999999999999999 8899999999887 4577888888999998883 245588
Q ss_pred EEEEeCccccccCCCCC-----Cccchhhhhhhhcc---------------CCceEEEEecChhHHHHhhhcCHHHHc--
Q psy14500 127 IIFIDELHTMIGTGKVE-----GSIDAGNMLKPELS---------------RGELHCIGATTLNEYRQYIEKDAAFER-- 184 (938)
Q Consensus 127 iL~iDEid~l~~~~~~~-----~~~~~~~~L~~~l~---------------~~~i~vI~~tn~~~~~~~~~ld~al~~-- 184 (938)
||||||+|.+.+..... ....+.+.|+..++ ..++++|+|||.++ .++++++|
T Consensus 102 vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~ 176 (293)
T 3t15_A 102 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDG 176 (293)
T ss_dssp CEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHH
T ss_pred EEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCC
Confidence 99999999998744321 11235567777763 34689999999988 89999997
Q ss_pred ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhcc
Q psy14500 185 RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 234 (938)
Q Consensus 185 Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 234 (938)
||+. +. .|+.++|..|++.+... . .++. ..++.++.+|.
T Consensus 177 R~d~~i~--~P~~~~r~~Il~~~~~~----~--~~~~---~~l~~~~~~~~ 216 (293)
T 3t15_A 177 RMEKFYW--APTREDRIGVCTGIFRT----D--NVPA---EDVVKIVDNFP 216 (293)
T ss_dssp HEEEEEE--CCCHHHHHHHHHHHHGG----G--CCCH---HHHHHHHHHSC
T ss_pred CCceeEe--CcCHHHHHHHHHHhccC----C--CCCH---HHHHHHhCCCC
Confidence 8875 44 57999999999876653 2 2333 34455555655
No 78
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.67 E-value=2.4e-16 Score=169.46 Aligned_cols=221 Identities=11% Similarity=0.080 Sum_probs=152.2
Q ss_pred hhHHHHHhcCCCCCccccHHHHHHHHHHHh----cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 19 ~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~----~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
..|.+.|.|..+ +.||+++++++...|. ...+++++|+||||||||++++++++.+........+....++.++
T Consensus 10 ~~l~~~~~~~~~--L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~IN 87 (318)
T 3te6_A 10 ESIRESLQKREL--LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHID 87 (318)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEE
T ss_pred hhhhhccCCccc--cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEe
Confidence 345666766432 7899999888876554 5778899999999999999999999998643211112245677788
Q ss_pred hhhhhc-------------Ccc-ccchHHHHHHHHHHHH-HhcCCCeEEEEeCccccccCCCCCCccchhhhhhhh--cc
Q psy14500 95 IALLLA-------------GTK-YRGEFEDRLKKILKEI-SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE--LS 157 (938)
Q Consensus 95 ~~~l~~-------------~~~-~~g~~~~~l~~~~~~a-~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~--l~ 157 (938)
+..+.. +.. ..+.....+...|..+ .....++|+||||+|.|. .+++...|... .+
T Consensus 88 c~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-------~q~~L~~l~~~~~~~ 160 (318)
T 3te6_A 88 ALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-------SEKILQYFEKWISSK 160 (318)
T ss_dssp TTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-------CTHHHHHHHHHHHCS
T ss_pred ccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-------cchHHHHHHhccccc
Confidence 644321 111 1233445677777765 234557899999999996 13433223222 24
Q ss_pred CCceEEEEecChhHHHHhhhcCHHHHcccc--eEEeeCCCHHHHHHHHHhhhhhhhcc----------------------
Q psy14500 158 RGELHCIGATTLNEYRQYIEKDAAFERRFQ--KILVEEPDIEETISILRGLQKKYEVH---------------------- 213 (938)
Q Consensus 158 ~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~---------------------- 213 (938)
..++.+|+++|..+... ..+++++.+||. .|.|++++.++...|++.-+......
T Consensus 161 ~s~~~vI~i~n~~d~~~-~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~ 239 (318)
T 3te6_A 161 NSKLSIICVGGHNVTIR-EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQN 239 (318)
T ss_dssp SCCEEEEEECCSSCCCH-HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-----
T ss_pred CCcEEEEEEecCcccch-hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccc
Confidence 56789999988764211 246778889995 49999999999999998777654211
Q ss_pred ---------cCCCCCHHHHHHHHH---hhhhccccCCCchhhhhHHHHHHHHHH
Q psy14500 214 ---------HGVEITDPAIVAASE---LSYRYISDRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 214 ---------~~~~i~~~~l~~~~~---~s~~~~~~~~~p~~a~~ll~~a~~~~~ 255 (938)
..+.+++++++.+++ ...|++ |+|+++|+.|+..+.
T Consensus 240 ~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~------R~Al~ilr~A~~~ae 287 (318)
T 3te6_A 240 QKIPDNVIVINHKINNKITQLIAKNVANVSGST------EKAFKICEAAVEISK 287 (318)
T ss_dssp ---CTTEEEECEECCHHHHHHHHHHHHHHHCSH------HHHHHHHHHHHHHHH
T ss_pred ccccccccccccccCHHHHHHHHHHHHhhCChH------HHHHHHHHHHHHHHH
Confidence 012579999999998 467778 999999999886654
No 79
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.67 E-value=2.5e-16 Score=180.20 Aligned_cols=200 Identities=20% Similarity=0.315 Sum_probs=145.3
Q ss_pred hcCCCCCccccHHHHHHHHHHHh---c---------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQ---R---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~---~---------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
.+.+|++++|+++++..+..++. . ..+.++||+||||||||+||+++|..+ +.+++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i 95 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITA 95 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEE
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 56699999999988777666443 1 124569999999999999999999987 5678888
Q ss_pred ehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC---Ccc---chhhhhhhhcc----CCceEE
Q psy14500 94 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSI---DAGNMLKPELS----RGELHC 163 (938)
Q Consensus 94 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~---~~~~~L~~~l~----~~~i~v 163 (938)
+.+.+. ..+.|.....+..+|+.+.. ..|+|+||||+|.+...+... +.. ...+.|+..++ +..+++
T Consensus 96 ~g~~~~--~~~~g~~~~~v~~lfq~a~~-~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viv 172 (499)
T 2dhr_A 96 SGSDFV--EMFVGVGAARVRDLFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 172 (499)
T ss_dssp EGGGGT--SSCTTHHHHHHHHHTTTSSS-SSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEE
T ss_pred ehhHHH--HhhhhhHHHHHHHHHHHHHh-cCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEE
Confidence 888776 34677777778888887753 347899999999997654321 111 23344554443 345889
Q ss_pred EEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHH-HHHHHHhhhhccccCCC
Q psy14500 164 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPA-IVAASELSYRYISDRFM 239 (938)
Q Consensus 164 I~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~-l~~~~~~s~~~~~~~~~ 239 (938)
|++||.++ .+|++++| ||+. |.|+.|+.++|..||+.+... ..+++++ +..++..+.++.
T Consensus 173 iAatn~p~-----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~------~~l~~dv~l~~lA~~t~G~~----- 236 (499)
T 2dhr_A 173 MAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG------KPLAEDVDLALLAKRTPGFV----- 236 (499)
T ss_dssp EECCSCGG-----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS------SCCCCSSTTHHHHTTSCSCC-----
T ss_pred EEecCChh-----hcCcccccccccceEEecCCCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHhcCCCC-----
Confidence 99999998 69999999 8875 999999999999999876643 2333332 555666655443
Q ss_pred chhhhhHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKI 254 (938)
Q Consensus 240 p~~a~~ll~~a~~~~ 254 (938)
+++...++..++..+
T Consensus 237 gadL~~lv~~Aa~~A 251 (499)
T 2dhr_A 237 GADLENLLNEAALLA 251 (499)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566777777776544
No 80
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.67 E-value=1.4e-15 Score=166.45 Aligned_cols=195 Identities=17% Similarity=0.297 Sum_probs=139.2
Q ss_pred ccccChHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~---~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
++|+|++.+++.+.+.+..... .......|..++||+||||||||++|+++|+.+. +.+++.++++++...
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~~---- 85 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK---- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCS----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHhh----
Confidence 5688999999999887753210 1111123445899999999999999999999873 458888888876532
Q ss_pred hhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 504 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
+.|..+. +.++...+...++||||||||.+. ..+++.|+..++.-. ....+
T Consensus 86 --------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~~ 149 (322)
T 1xwi_A 86 --------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDG 149 (322)
T ss_dssp --------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS--------SCCTT
T ss_pred --------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc--------ccCCC
Confidence 3343322 334455566778999999999873 356788888887411 12356
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
+++|+|||.+. .+++.+++||+..+.+++++.++..+|+...+. ..+
T Consensus 150 v~vI~atn~~~------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~-------~~~-- 196 (322)
T 1xwi_A 150 ILVLGATNIPW------------------------VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLG-------TTQ-- 196 (322)
T ss_dssp EEEEEEESCTT------------------------TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT-------TCC--
T ss_pred EEEEEecCCcc------------------------cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHh-------cCC--
Confidence 88999999753 367899999999999999999999999665542 222
Q ss_pred EEEcHHHHHHHHhhcccccccccccccc
Q psy14500 651 LKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 651 l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
..+++..++.|+.. ...|..+||...
T Consensus 197 ~~l~~~~l~~la~~--t~G~sgadl~~l 222 (322)
T 1xwi_A 197 NSLTEADFRELGRK--TDGYSGADISII 222 (322)
T ss_dssp BCCCHHHHHHHHHT--CTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHH--cCCCCHHHHHHH
Confidence 44678888999873 345666777765
No 81
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.66 E-value=5e-15 Score=163.23 Aligned_cols=191 Identities=21% Similarity=0.305 Sum_probs=136.9
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhc-----CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQR-----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~-----~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
.|+++++|.+|++++|++..++.+...+.. ....+++|+||||+||||+++++|..+ ++.+...+
T Consensus 14 ~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l----------~~~~~~~s 83 (334)
T 1in4_A 14 SGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL----------QTNIHVTS 83 (334)
T ss_dssp ---CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH----------TCCEEEEE
T ss_pred HHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEe
Confidence 357889999999999999988888776653 345789999999999999999999998 44444333
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC----------------
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---------------- 158 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---------------- 158 (938)
...... + ..+..++... ..+.|+||||++.+.+ .+.+.|...++.
T Consensus 84 g~~~~~-----~---~~l~~~~~~~---~~~~v~~iDE~~~l~~--------~~~e~L~~~~~~~~~~i~~~~~~~~~~i 144 (334)
T 1in4_A 84 GPVLVK-----Q---GDMAAILTSL---ERGDVLFIDEIHRLNK--------AVEELLYSAIEDFQIDIMIGKGPSAKSI 144 (334)
T ss_dssp TTTCCS-----H---HHHHHHHHHC---CTTCEEEEETGGGCCH--------HHHHHHHHHHHTSCCCC-----------
T ss_pred chHhcC-----H---HHHHHHHHHc---cCCCEEEEcchhhcCH--------HHHHHHHHHHHhcccceeeccCcccccc
Confidence 221110 1 1233333222 2345999999999854 223333333321
Q ss_pred ----CceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhc
Q psy14500 159 ----GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 233 (938)
Q Consensus 159 ----~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 233 (938)
..+.+|++|+.+. .+++++++||.. +.|++++.+++..|++..... .++.++++++..++..+.+.
T Consensus 145 ~~~l~~~~li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~----~~~~~~~~~~~~ia~~~~G~ 215 (334)
T 1in4_A 145 RIDIQPFTLVGATTRSG-----LLSSPLRSRFGIILELDFYTVKELKEIIKRAASL----MDVEIEDAAAEMIAKRSRGT 215 (334)
T ss_dssp ----CCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHTSTTC
T ss_pred cccCCCeEEEEecCCcc-----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHhcCCC
Confidence 1367788888887 899999999985 889999999999999887764 46789999999999887665
Q ss_pred cccCCCchhhhhHHHHHHHHH
Q psy14500 234 ISDRFMPDKAIDLIDEAAAKI 254 (938)
Q Consensus 234 ~~~~~~p~~a~~ll~~a~~~~ 254 (938)
. +.+..+++.+...+
T Consensus 216 ~------R~a~~ll~~~~~~a 230 (334)
T 1in4_A 216 P------RIAIRLTKRVRDML 230 (334)
T ss_dssp H------HHHHHHHHHHHHHH
T ss_pred h------HHHHHHHHHHHHHH
Confidence 5 88888887765443
No 82
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.66 E-value=8e-16 Score=170.77 Aligned_cols=194 Identities=16% Similarity=0.286 Sum_probs=137.2
Q ss_pred ccccChHHHHHHHHHHHHhhh---cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSR---SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~---~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.|+|++.+++.+...+.... ..+.....|..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~~---- 123 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK---- 123 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHSC----
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhhh----
Confidence 568999999999988874321 0011122344479999999999999999999998 778999988765432
Q ss_pred hhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 504 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
+.|..+. +.++...+...++||||||||.+.+ .+++.|+..|+.-. ....+
T Consensus 124 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 187 (355)
T 2qp9_X 124 --------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQG 187 (355)
T ss_dssp --------C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------CC
T ss_pred --------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc--------ccCCC
Confidence 3333221 2334445556789999999999873 46888898887411 12356
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
+++|+|||.+. .+++.+++||+..+.+++++.++..+|+...+. ..+
T Consensus 188 v~vI~atn~~~------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~-------~~~-- 234 (355)
T 2qp9_X 188 VLVLGATNIPW------------------------QLDSAIRRRFERRIYIPLPDLAARTTMFEINVG-------DTP-- 234 (355)
T ss_dssp EEEEEEESCGG------------------------GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHT-------TSC--
T ss_pred eEEEeecCCcc------------------------cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHh-------hCC--
Confidence 88999999743 367899999999999999999999999765443 222
Q ss_pred EEEcHHHHHHHHhhcccccccccccccc
Q psy14500 651 LKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 651 l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
..+++..++.|+... ..|..+||...
T Consensus 235 ~~~~~~~l~~la~~t--~G~sg~dl~~l 260 (355)
T 2qp9_X 235 SVLTKEDYRTLGAMT--EGYSGSDIAVV 260 (355)
T ss_dssp BCCCHHHHHHHHHHT--TTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHc--CCCCHHHHHHH
Confidence 446788888898743 44566788776
No 83
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.64 E-value=2.7e-15 Score=158.92 Aligned_cols=202 Identities=20% Similarity=0.316 Sum_probs=140.0
Q ss_pred HhcCCCCCccccHHHHHHHHHHHh---c---------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14500 25 ARLGKLDPVIGRDDEIRRAIQVLQ---R---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92 (938)
Q Consensus 25 ~~~~~~~~lvG~~~~~~~l~~~l~---~---------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~ 92 (938)
.++.+|++++|.++....+..... . ..+.+++|+|||||||||++++++..+ +..++.
T Consensus 10 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~----------~~~~i~ 79 (254)
T 1ixz_A 10 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFIT 79 (254)
T ss_dssp CCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT----------TCCEEE
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEE
Confidence 355689999999987666655332 1 224569999999999999999999987 456777
Q ss_pred EehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC---Cc---cchhhhhhhhcc----CCceE
Q psy14500 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GS---IDAGNMLKPELS----RGELH 162 (938)
Q Consensus 93 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~---~~~~~~L~~~l~----~~~i~ 162 (938)
++...+.. .+.+.....+..+|+.+.. ..++++|+||+|.+....... .. ....+.+...++ +..++
T Consensus 80 ~~~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i 156 (254)
T 1ixz_A 80 ASGSDFVE--MFVGVGAARVRDLFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIV 156 (254)
T ss_dssp EEHHHHHH--SCTTHHHHHHHHHHHHHTT-SSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEE
T ss_pred eeHHHHHH--HHhhHHHHHHHHHHHHHHh-cCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEE
Confidence 88766652 3456666678888888753 347899999999987644221 11 122334444443 23578
Q ss_pred EEEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHH-HHHHHHHhhhhccccCC
Q psy14500 163 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDP-AIVAASELSYRYISDRF 238 (938)
Q Consensus 163 vI~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~-~l~~~~~~s~~~~~~~~ 238 (938)
++++||.++ .+|+++++ ||+. ++++.|+.++|..||+.+.... .++++ .+..++..+.+|.
T Consensus 157 ~~a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~------~~~~~~~~~~la~~~~G~~---- 221 (254)
T 1ixz_A 157 VMAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK------PLAEDVDLALLAKRTPGFV---- 221 (254)
T ss_dssp EEEEESCGG-----GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTTCC----
T ss_pred EEEccCCch-----hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC------CCCcccCHHHHHHHcCCCC----
Confidence 889999988 79999999 8885 9999999999999998766432 23332 2566777666554
Q ss_pred CchhhhhHHHHHHHHHH
Q psy14500 239 MPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 239 ~p~~a~~ll~~a~~~~~ 255 (938)
+++...++..++..+.
T Consensus 222 -~~dl~~~~~~a~~~a~ 237 (254)
T 1ixz_A 222 -GADLENLLNEAALLAA 237 (254)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 4567777777765443
No 84
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.63 E-value=3.3e-15 Score=164.44 Aligned_cols=189 Identities=13% Similarity=0.159 Sum_probs=143.7
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++|++++++.+...+.... ..+.+|++||||||||++|+++++.+ +.+++.++++.... ..+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~--------~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~~-~~i~--- 90 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK--------IPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCKI-DFVR--- 90 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC--------CCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCCH-HHHH---
T ss_pred HHHhCcHHHHHHHHHHHHcCC--------CCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccCH-HHHH---
Confidence 568899999999999988432 12368899999999999999999998 67888888765431 1111
Q ss_pred CCCCCCccccccchhHHHHHh----CCCEEEEEccccccC-HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCc
Q psy14500 507 GAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKAN-SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGS 581 (938)
Q Consensus 507 g~~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~-~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~ 581 (938)
..+...... ..++||||||+|.++ ++.++.|++++++ ...++.+|+|||...
T Consensus 91 ------------~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~-----------~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 91 ------------GPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA-----------YSSNCSIIITANNID 147 (324)
T ss_dssp ------------THHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH-----------HGGGCEEEEEESSGG
T ss_pred ------------HHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEeCCcc
Confidence 112222221 246899999999999 9999999999986 345678999999633
Q ss_pred hhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcH-HHHHH
Q psy14500 582 DKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK-AALKK 660 (938)
Q Consensus 582 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~-~~~~~ 660 (938)
.+.+++.+|| .++.|++++.+++.+|+...+..+...+...+ +.+++ +++++
T Consensus 148 ------------------------~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~--~~~~~~~~~~~ 200 (324)
T 3u61_B 148 ------------------------GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG--IAIADMKVVAA 200 (324)
T ss_dssp ------------------------GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT--CCBSCHHHHHH
T ss_pred ------------------------ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCCCcHHHHHH
Confidence 3788999999 58999999999999999988888888777777 66788 99999
Q ss_pred HHhhcccccccccccccchHHHHHHH
Q psy14500 661 ISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 661 L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
|+... -||+....+.++++.
T Consensus 201 l~~~~------~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 201 LVKKN------FPDFRKTIGELDSYS 220 (324)
T ss_dssp HHHHT------CSCTTHHHHHHHHHG
T ss_pred HHHhC------CCCHHHHHHHHHHHh
Confidence 98732 356666644455443
No 85
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.63 E-value=4.3e-15 Score=169.82 Aligned_cols=195 Identities=17% Similarity=0.292 Sum_probs=136.1
Q ss_pred ccccChHHHHHHHHHHHHhhh---cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSR---SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~---~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.|+|++.+++.+...+.... ..+.....|..++||+||||||||++|+++|+.+. +.+++.++++++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~~~---- 207 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK---- 207 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC---------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHHhh----
Confidence 568999999999988874321 01111123445899999999999999999999873 468899998876532
Q ss_pred hhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 504 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
+.|..+. +.++...+...++||||||||.+. ..+++.|+..++.-. ....+
T Consensus 208 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~~ 271 (444)
T 2zan_A 208 --------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDG 271 (444)
T ss_dssp ------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS--------CCCSS
T ss_pred --------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc--------cCCCC
Confidence 3333222 344555566778999999999873 367888888887411 12456
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
++||+|||.+. .+++.+++||+.++.+++++.++...|+...+. ..+
T Consensus 272 v~vI~atn~~~------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~-------~~~-- 318 (444)
T 2zan_A 272 ILVLGATNIPW------------------------VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLG-------STQ-- 318 (444)
T ss_dssp CEEEEEESCGG------------------------GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT-------TSC--
T ss_pred EEEEecCCCcc------------------------ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHh-------cCC--
Confidence 88999999743 378899999999999999999999998665442 223
Q ss_pred EEEcHHHHHHHHhhcccccccccccccc
Q psy14500 651 LKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 651 l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
..+++..++.|+... ..|..+||...
T Consensus 319 ~~l~~~~l~~la~~t--~G~sgadl~~l 344 (444)
T 2zan_A 319 NSLTEADFQELGRKT--DGYSGADISII 344 (444)
T ss_dssp EECCHHHHHHHHHHT--TTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHc--CCCCHHHHHHH
Confidence 567888899998743 44566777765
No 86
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.63 E-value=1.2e-15 Score=173.53 Aligned_cols=192 Identities=16% Similarity=0.286 Sum_probs=129.3
Q ss_pred ccccChHHHH---HHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAI---SAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~---~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.++||++++ ..+...+..... +++||+||||||||++|++||+.+ +.++..+++...... .+.
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~---------~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~~~-~ir 92 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHL---------HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSGVK-EIR 92 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCC---------CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCCHH-HHH
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCC---------cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCCHH-HHH
Confidence 5689999999 788888875542 379999999999999999999998 667777775432111 010
Q ss_pred hhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchh
Q psy14500 504 RLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDK 583 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~ 583 (938)
..+ ...........++|||||||+.++...|+.|++.+++|. +++|++|+....
T Consensus 93 ~~~------------~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~~-------------v~lI~att~n~~- 146 (447)
T 3pvs_A 93 EAI------------ERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT-------------ITFIGATTENPS- 146 (447)
T ss_dssp HHH------------HHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTTS-------------CEEEEEESSCGG-
T ss_pred HHH------------HHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcCc-------------eEEEecCCCCcc-
Confidence 000 001111123567999999999999999999999999743 456766654332
Q ss_pred hhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHh
Q psy14500 584 IKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 663 (938)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~ 663 (938)
..+.+++++||. ++.|.+++.+++..++...+......+.. ..+.++++++++|+.
T Consensus 147 ---------------------~~l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~--~~~~i~~~al~~L~~ 202 (447)
T 3pvs_A 147 ---------------------FELNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGG--QDIVLPDETRRAIAE 202 (447)
T ss_dssp ---------------------GSSCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTT--SSEECCHHHHHHHHH
T ss_pred ---------------------cccCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhcc--ccCcCCHHHHHHHHH
Confidence 247899999995 88899999999999987776543222211 348899999999998
Q ss_pred hcccccccccccccchHHHHHHHH
Q psy14500 664 IGFDLIYGARDVHGCKKSLSILLK 687 (938)
Q Consensus 664 ~~~~~~~~~~dl~~~~~~l~~~l~ 687 (938)
. +. ||+....+.+++++.
T Consensus 203 ~---~~---Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 203 L---VN---GDARRALNTLEMMAD 220 (447)
T ss_dssp H---HC---SCHHHHHHHHHHHHH
T ss_pred H---CC---CCHHHHHHHHHHHHH
Confidence 4 33 344444444666653
No 87
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.62 E-value=6.3e-15 Score=158.23 Aligned_cols=201 Identities=20% Similarity=0.308 Sum_probs=139.1
Q ss_pred hcCCCCCccccHHHHHHHHHHHhc------------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQR------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~~------------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
++.+|++++|.++.++.+...... ..+.+++|+|||||||||++++++..+ ...++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~----------~~~~i~~ 104 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITA 104 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc----------CCCEEEe
Confidence 556899999999877666554321 223469999999999999999999987 4567778
Q ss_pred ehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCC---Cc---cchhhhhhhhcc----CCceEE
Q psy14500 94 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GS---IDAGNMLKPELS----RGELHC 163 (938)
Q Consensus 94 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~---~~~~~~L~~~l~----~~~i~v 163 (938)
+...+.. .+.+.....+..+|+.+.. ..++++|+||++.+....... .. ....+.+...++ +..+++
T Consensus 105 ~~~~~~~--~~~~~~~~~i~~~~~~~~~-~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~ 181 (278)
T 1iy2_A 105 SGSDFVE--MFVGVGAARVRDLFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 181 (278)
T ss_dssp EHHHHHH--STTTHHHHHHHHHHHHHHT-SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEE
T ss_pred cHHHHHH--HHhhHHHHHHHHHHHHHHh-cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 8766652 3456666678888888763 347899999999886543211 01 122333444443 234788
Q ss_pred EEecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHH-HHHHHHHhhhhccccCCC
Q psy14500 164 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDP-AIVAASELSYRYISDRFM 239 (938)
Q Consensus 164 I~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~-~l~~~~~~s~~~~~~~~~ 239 (938)
+++||.++ .+|+++.+ ||.. ++|+.|+.++|..||+.+... ..++++ .+..++..+.++.
T Consensus 182 ~a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~------~~~~~~~~~~~la~~~~G~~----- 245 (278)
T 1iy2_A 182 MAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG------KPLAEDVDLALLAKRTPGFV----- 245 (278)
T ss_dssp EEEESCTT-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT------SCBCTTCCHHHHHHTCTTCC-----
T ss_pred EEecCCch-----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc------CCCCcccCHHHHHHHcCCCC-----
Confidence 89999988 79999998 8875 999999999999999876653 233332 2556666665544
Q ss_pred chhhhhHHHHHHHHHH
Q psy14500 240 PDKAIDLIDEAAAKIK 255 (938)
Q Consensus 240 p~~a~~ll~~a~~~~~ 255 (938)
+++...+++.++..+.
T Consensus 246 ~~dl~~l~~~a~~~a~ 261 (278)
T 1iy2_A 246 GADLENLLNEAALLAA 261 (278)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4556667777665443
No 88
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.61 E-value=6.2e-15 Score=168.94 Aligned_cols=207 Identities=16% Similarity=0.190 Sum_probs=139.8
Q ss_pred HHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14500 416 EKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 495 (938)
Q Consensus 416 ~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 495 (938)
..+..+...+...++||+++++.+..++.... ++||+||||||||++|++||+.+. .+.++..+++.-
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~~-----------~VLL~GpPGtGKT~LAraLa~~l~-~~~~f~~~~~~~ 78 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALSGE-----------SVFLLGPPGIAKSLIARRLKFAFQ-NARAFEYLMTRF 78 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTC-----------EEEEECCSSSSHHHHHHHGGGGBS-SCCEEEEECCTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC-----------eeEeecCchHHHHHHHHHHHHHHh-hhhHHHHHHHhc
Confidence 45667888899999999999999888876432 899999999999999999999873 344666666642
Q ss_pred ccchhhhhhhcCCCCCCccccccchhHHHHHh--CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEE
Q psy14500 496 FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR--KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTII 573 (938)
Q Consensus 496 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~--~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 573 (938)
.. ...++|...++.... .+.+...... ...+|||||||+++++.+++.|+.+|+++.++. .|........++
T Consensus 79 -~t---~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i-~G~~~~~~~~~i 152 (500)
T 3nbx_X 79 -ST---PEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN-GAHVEKIPMRLL 152 (500)
T ss_dssp -CC---HHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC-SSSEEECCCCEE
T ss_pred -CC---HHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC-CCCcCCcchhhh
Confidence 22 245666432211100 1111000000 024699999999999999999999999998876 344455555567
Q ss_pred EEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCH-HHHHHHHHHHH---------------
Q psy14500 574 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KNILSIANIQL--------------- 637 (938)
Q Consensus 574 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~-e~~~~i~~~~l--------------- 637 (938)
|+|||..++ ...+.+++++||...+.+++++. ++...|+....
T Consensus 153 I~ATN~lpe---------------------~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~ 211 (500)
T 3nbx_X 153 VAASNELPE---------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTD 211 (500)
T ss_dssp EEEESSCCC---------------------TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCH
T ss_pred hhccccCCC---------------------ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecH
Confidence 888885332 12466899999988899999987 66777765322
Q ss_pred ---HHHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 638 ---NILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 638 ---~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
..+..... .+.+++++++++++..
T Consensus 212 e~l~~~~~~~~----~v~v~d~v~e~i~~l~ 238 (500)
T 3nbx_X 212 EEYERWQKEIG----EITLPDHVFELIFMLR 238 (500)
T ss_dssp HHHHHHHHHHT----TCBCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCC----cccCchHHHHHHHHHH
Confidence 12222221 2668888988887643
No 89
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.61 E-value=5.9e-15 Score=162.86 Aligned_cols=206 Identities=21% Similarity=0.254 Sum_probs=138.4
Q ss_pred HHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 417 KLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 417 ~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
.+..+...+...++||+.+++.+...+... .++||+||||||||++|+++|+.+ +.++..+++...
T Consensus 17 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~-----------~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~ 82 (331)
T 2r44_A 17 KIKEVIDEVGKVVVGQKYMINRLLIGICTG-----------GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPD 82 (331)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHT-----------CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred HHHHHHHHhccceeCcHHHHHHHHHHHHcC-----------CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCC
Confidence 355677788899999999999998888642 269999999999999999999988 667888887532
Q ss_pred cchhhhhhhcCCCCCCccccccchhHHHHHhC--CCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceee-cCCeEE
Q psy14500 497 IEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK--PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN-FRNTII 573 (938)
Q Consensus 497 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~--~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~-~~~~ii 573 (938)
.... .++|... + +...+ .+ .+... ..+||||||++++++..++.|++.++++.++.. |.... ..++++
T Consensus 83 ~~~~---~l~g~~~-~-~~~~~-~~--~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~-g~~~~~~~~~~v 153 (331)
T 2r44_A 83 LLPS---DLIGTMI-Y-NQHKG-NF--EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIG-DTTYPLDNPFLV 153 (331)
T ss_dssp CCHH---HHHEEEE-E-ETTTT-EE--EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TEEEECCSSCEE
T ss_pred CChh---hcCCcee-e-cCCCC-ce--EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeC-CEEEECCCCEEE
Confidence 2211 1222110 0 00000 00 00001 137999999999999999999999999887764 33333 345777
Q ss_pred EEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHH-------------
Q psy14500 574 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNIL------------- 640 (938)
Q Consensus 574 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~------------- 640 (938)
|+|+|.... . . ...+++++++||+..+.+.+++.++..+|+...+...
T Consensus 154 iat~np~~~-~-~-----------------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 214 (331)
T 2r44_A 154 LATQNPVEQ-E-G-----------------TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKND 214 (331)
T ss_dssp EEEECTTCC-S-C-----------------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHH
T ss_pred EEecCCCcc-c-C-----------------cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHH
Confidence 778884221 0 0 1137899999998789999999999999987654320
Q ss_pred HHHHHccCCeEEEcHHHHHHHHhh
Q psy14500 641 KNKLLKMNMDLKISKAALKKISNI 664 (938)
Q Consensus 641 ~~~~~~~~~~l~~~~~~~~~L~~~ 664 (938)
..........+.+++++++++++.
T Consensus 215 i~~~~~~~~~v~~~~~~~~~i~~~ 238 (331)
T 2r44_A 215 VLEIRNEINKVTISESLEKYIIEL 238 (331)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHH
Confidence 000000001256788888888763
No 90
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.60 E-value=7.6e-15 Score=161.52 Aligned_cols=179 Identities=13% Similarity=0.241 Sum_probs=134.3
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++|++.++..+...+...... ..+..++||+||||||||++|+++++.+ +.++..++++.+....
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~~------ 78 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKAR----KEPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKPG------ 78 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHH----CSCCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSHH------
T ss_pred HHhhCHHHHHHHHHHHHHHHHcc----CCCCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCChH------
Confidence 56889999999998888754321 1122379999999999999999999988 6788888887654321
Q ss_pred CCCCCCccccccchhHHHHHh--CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCC-------ceeecCCeEEEEec
Q psy14500 507 GAPPGYIGYEEGGYLTEIVRR--KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRG-------RTINFRNTIIVMTS 577 (938)
Q Consensus 507 g~~~~~~g~~~~~~l~~~~~~--~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g-------~~~~~~~~iiI~tt 577 (938)
.+...+.. +.+++||||||+.+++..++.|+..++++.+....+ ......++++|++|
T Consensus 79 -------------~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 79 -------------DLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp -------------HHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred -------------HHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 22333332 556899999999999999999999999876553221 12233578899999
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHH
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 657 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 657 (938)
|... .|.+++++||+.++.|++++.+++..++...+. ..+ +.+++++
T Consensus 146 ~~~~------------------------~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~-------~~~--~~~~~~~ 192 (324)
T 1hqc_A 146 TRPG------------------------LITAPLLSRFGIVEHLEYYTPEELAQGVMRDAR-------LLG--VRITEEA 192 (324)
T ss_dssp SCCS------------------------SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHH-------TTT--CCCCHHH
T ss_pred CCcc------------------------cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHH-------hcC--CCCCHHH
Confidence 9643 377889999988999999999998888655442 233 5689999
Q ss_pred HHHHHhh
Q psy14500 658 LKKISNI 664 (938)
Q Consensus 658 ~~~L~~~ 664 (938)
++.|+..
T Consensus 193 ~~~l~~~ 199 (324)
T 1hqc_A 193 ALEIGRR 199 (324)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999884
No 91
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.60 E-value=6.4e-15 Score=166.14 Aligned_cols=183 Identities=19% Similarity=0.284 Sum_probs=128.8
Q ss_pred ccccChHHHHHHHHHHHHhhhcC---CCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSG---LSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~---~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.++|++.+++.+...+...... ......+..++||+||||||||++|++||+.+ +.+++.++|+++...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~---- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSK---- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC-------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhcc----
Confidence 56899999999999888543221 00111233489999999999999999999988 789999999876642
Q ss_pred hhcCCCCCCcccccc--chhHHHHHhCCCEEEEEcccccc-----------CHHHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 504 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
|.|.... ..++.......++||||||||.+ ...+++.|+..++...- ....+
T Consensus 188 --------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~ 252 (389)
T 3vfd_A 188 --------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-------AGDDR 252 (389)
T ss_dssp ------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------C
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc-------cCCCC
Confidence 3333221 23444556667799999999988 45678888888874110 12356
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
++||+|||... .+.+.+++||+.++.|++++.++...|+...+. ..+
T Consensus 253 v~vI~atn~~~------------------------~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~-------~~~-- 299 (389)
T 3vfd_A 253 VLVMGATNRPQ------------------------ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLC-------KQG-- 299 (389)
T ss_dssp EEEEEEESCGG------------------------GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHT-------TSC--
T ss_pred EEEEEecCCch------------------------hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHH-------hcC--
Confidence 78999999632 367899999998999999999999999665443 233
Q ss_pred EEEcHHHHHHHHhh
Q psy14500 651 LKISKAALKKISNI 664 (938)
Q Consensus 651 l~~~~~~~~~L~~~ 664 (938)
..++++.+..|+..
T Consensus 300 ~~l~~~~~~~la~~ 313 (389)
T 3vfd_A 300 SPLTQKELAQLARM 313 (389)
T ss_dssp CCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 45778888888873
No 92
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=99.60 E-value=6.6e-15 Score=155.61 Aligned_cols=147 Identities=21% Similarity=0.309 Sum_probs=108.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCcccccccc
Q psy14500 623 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 702 (938)
Q Consensus 623 ~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~G 702 (938)
.++++++..++.... +.+..+..-+.++ .+-..+|||||++++|.++++..++. +.+.++|+|
T Consensus 28 ~l~~~~~~~l~~~~~----~il~~ep~ll~~~------------~~i~viGDIHG~~~~L~~ll~~~g~~-~~~~~vfLG 90 (299)
T 3e7a_A 28 QLTENEIRGLCLKSR----EIFLSQPILLELE------------APLKICGDIHGQYYDLLRLFEYGGFP-PESNYLFLG 90 (299)
T ss_dssp CCCHHHHHHHHHHHH----HHHHHSCSEEEEC------------SSEEEECBCTTCHHHHHHHHHHHCST-TSSCEEECS
T ss_pred CCCHHHHHHHHHHHH----HHHHhCCCeeecC------------CCEEEEecCCCCHHHHHHHHHHhCCC-CCccEEeCC
Confidence 467888888855433 3344443334443 24577999999999999999999874 568899999
Q ss_pred ccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhCCCCHHHHHHHHhcCCceEE-e
Q psy14500 703 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-Y 777 (938)
Q Consensus 703 D~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~-~ 777 (938)
|++|||+.+++|+.+++.+ +.++++|+||||.+.+....+... ...........+.+.+|++.||+... .
T Consensus 91 D~VDrG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~i~~~ygF~~-----e~~~ky~~~l~~~~~~~f~~LPlaaii~ 165 (299)
T 3e7a_A 91 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYD-----ECKRRYNIKLWKTFTDCFNCLPIAAIVD 165 (299)
T ss_dssp CCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHH-----HHHHHSCHHHHHHHHHHHTTCCCEEEET
T ss_pred cccCCCCCcHHHHHHHHHHHhhCCCcEEEEecCchhhhhcccccchH-----HHHHHhhHHHHHHHHHHHhhCCceEEEC
Confidence 9999999999999999877 457899999999988765433210 01111111224678899999999855 4
Q ss_pred CCEEEEecccCcCC
Q psy14500 778 KKYLMIHAGVAKQW 791 (938)
Q Consensus 778 ~~~~~vHAg~~p~~ 791 (938)
+++++||||++|.+
T Consensus 166 ~~il~vHGGlsp~~ 179 (299)
T 3e7a_A 166 EKIFCCHGGLSPDL 179 (299)
T ss_dssp TTEEEESSCCCTTC
T ss_pred CeEEEEcCccCccc
Confidence 58999999999975
No 93
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.59 E-value=1.2e-14 Score=161.77 Aligned_cols=195 Identities=16% Similarity=0.216 Sum_probs=135.6
Q ss_pred ccccChHHHHHHHHHHHHhhhcC---CCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSG---LSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~---~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.++|++.+++.+...+...... ......+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~---- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK---- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS----
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc----
Confidence 56899999999999888642110 00011233489999999999999999999988 779999999876542
Q ss_pred hhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 504 RLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 504 ~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
+.|... .+.++.......++||||||||.+. ..+++.|+..++.... ....+
T Consensus 157 --------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~-------~~~~~ 221 (357)
T 3d8b_A 157 --------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATT-------SSEDR 221 (357)
T ss_dssp --------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----------CCCC
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcccc-------cCCCC
Confidence 233221 1234444556678999999998873 3567888888874221 12356
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
+++|+|||... .+.+.+++||+..+.+++++.++..+++...+. ..+
T Consensus 222 v~vI~atn~~~------------------------~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~-------~~~-- 268 (357)
T 3d8b_A 222 ILVVGATNRPQ------------------------EIDEAARRRLVKRLYIPLPEASARKQIVINLMS-------KEQ-- 268 (357)
T ss_dssp EEEEEEESCGG------------------------GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH-------TSC--
T ss_pred EEEEEecCChh------------------------hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh-------hcC--
Confidence 78899999632 367889999998999999999999998665443 223
Q ss_pred EEEcHHHHHHHHhhcccccccccccccc
Q psy14500 651 LKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 651 l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
+.++++.++.|+... ..|..+|+...
T Consensus 269 ~~l~~~~l~~la~~t--~G~s~~dl~~l 294 (357)
T 3d8b_A 269 CCLSEEEIEQIVQQS--DAFSGADMTQL 294 (357)
T ss_dssp BCCCHHHHHHHHHHT--TTCCHHHHHHH
T ss_pred CCccHHHHHHHHHHc--CCCCHHHHHHH
Confidence 457788888888743 33344555544
No 94
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.59 E-value=4.3e-15 Score=173.84 Aligned_cols=179 Identities=17% Similarity=0.237 Sum_probs=119.5
Q ss_pred CccccHHHHHHHHHHHh------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc---
Q psy14500 32 PVIGRDDEIRRAIQVLQ------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT--- 102 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~--- 102 (938)
+++|.+++.+.+...+. .....++||+||||||||++|+++|..+ +.++..++++......
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC--------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhhh
Confidence 47999988887766443 2235679999999999999999999998 5677777765433211
Q ss_pred ----cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC-----------------Cce
Q psy14500 103 ----KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-----------------GEL 161 (938)
Q Consensus 103 ----~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~-----------------~~i 161 (938)
.+.|.....+...|..+...+ + ||||||+|.+.+... .+.++.|+..++. ..+
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~~~-~-vl~lDEid~l~~~~~----~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGKLN-P-VFLLDEIDKMSSDFR----GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp ------------CHHHHHHTTCSSS-E-EEEEEESSSCC-------------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred hHHHHHhccCchHHHHHHHHhhccC-C-EEEEhhhhhhhhhhc----cCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 344555555556666554222 3 999999999976532 1234556666632 457
Q ss_pred EEEEecChhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhh-hhcc-----cCCCCCHHHHHHHHHhhh
Q psy14500 162 HCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKK-YEVH-----HGVEITDPAIVAASELSY 231 (938)
Q Consensus 162 ~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~-~~~~-----~~~~i~~~~l~~~~~~s~ 231 (938)
++|+|||... .++++|++||..|.|+.|+.+++..|++.++.. +... .++.++++++..++....
T Consensus 226 ~iI~ttN~~~-----~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~ 296 (543)
T 3m6a_A 226 LFIATANNLA-----TIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYT 296 (543)
T ss_dssp EEEEECSSTT-----TSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHC
T ss_pred EEEeccCccc-----cCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCC
Confidence 9999999987 899999999988999999999999999776522 2222 245678999988777443
No 95
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.59 E-value=1e-14 Score=158.29 Aligned_cols=161 Identities=20% Similarity=0.386 Sum_probs=116.9
Q ss_pred ccccChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14500 427 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 498 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~--------~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 498 (938)
+.++|++.+++.+...+... ..+. .+..++||+||||||||++|+++|+.+ +.+++.++++++..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~----~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM----TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLT 87 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC----CCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHHHh
Confidence 45889999999988887643 1121 223379999999999999999999988 67899999877653
Q ss_pred hhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCCc
Q psy14500 499 KHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGR 564 (938)
Q Consensus 499 ~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~ 564 (938)
.++|... ...+.++.......++||||||+|.+.+ .+++.|+..|+.-.
T Consensus 88 -----~~~g~~~-----~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~------- 150 (301)
T 3cf0_A 88 -----MWFGESE-----ANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS------- 150 (301)
T ss_dssp -----HHHTTCT-----THHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-------
T ss_pred -----hhcCchH-----HHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-------
Confidence 2233221 1112344445556679999999997654 35788999998411
Q ss_pred eeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 565 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 565 ~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
...++++|+|||.+. .+++.+++ ||+..+.+++++.++..+|+...+
T Consensus 151 --~~~~v~vi~atn~~~------------------------~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 151 --TKKNVFIIGATNRPD------------------------IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp --TTSSEEEEEEESCGG------------------------GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred --CCCCEEEEEecCCcc------------------------ccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 235688999999743 25677776 999999999999999999866554
No 96
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.58 E-value=1.1e-15 Score=146.46 Aligned_cols=138 Identities=7% Similarity=0.142 Sum_probs=104.7
Q ss_pred cccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcC
Q psy14500 428 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 507 (938)
Q Consensus 428 ~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 507 (938)
.++|++.+++.+...+...... ..++||+||||||||++|+++++.. . +++.++|+.+....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~-------~~~vll~G~~GtGKt~lA~~i~~~~---~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR-------TSPVFLTGEAGSPFETVARYFHKNG---T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC-------SSCEEEEEETTCCHHHHHGGGCCTT---S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCccHHHHHHHHHHhC---C-CeEEechhhCChHh-------
Confidence 5789999999999988765421 1369999999999999999999876 3 89999998754321
Q ss_pred CCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhh
Q psy14500 508 APPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 587 (938)
Q Consensus 508 ~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 587 (938)
..+.+..+.+++||||||+.++++.|..|+++++++. ..++.+|+|||.+...+ .
T Consensus 67 -------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~~tn~~~~~~-~- 121 (143)
T 3co5_A 67 -------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIASCSYAAGSD-G- 121 (143)
T ss_dssp -------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT----------TTTCEEEEEEEECTTTC---
T ss_pred -------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC----------CCCEEEEEecCCCHHHH-H-
Confidence 2344555667899999999999999999999999742 34578999999876543 2
Q ss_pred hcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCC
Q psy14500 588 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN 625 (938)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~ 625 (938)
.. |+++|++|+.. .|.+|||.
T Consensus 122 ----------------~~-~~~~L~~rl~~~~i~lPpLr 143 (143)
T 3co5_A 122 ----------------IS-CEEKLAGLFSESVVRIPPLS 143 (143)
T ss_dssp -----------------C-HHHHHHHHSSSEEEEECCCC
T ss_pred ----------------hC-ccHHHHHHhcCcEEeCCCCC
Confidence 23 78899999865 67888863
No 97
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=99.58 E-value=3.5e-15 Score=166.32 Aligned_cols=149 Identities=19% Similarity=0.266 Sum_probs=107.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCcccccccc
Q psy14500 623 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 702 (938)
Q Consensus 623 ~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~G 702 (938)
.++++++.+|+.. ..+.+.....-+.++ .+.+.+|||||++++|.++++..+ .++.+.+||+|
T Consensus 55 ~l~~~~i~~L~~~----a~~il~~Ep~ll~l~------------~pI~VIGDIHGq~~dL~~LL~~~g-~p~~d~yVFLG 117 (521)
T 1aui_A 55 RLEESVALRIITE----GASILRQEKNLLDID------------APVTVCGDIHGQFFDLMKLFEVGG-SPANTRYLFLG 117 (521)
T ss_dssp CBCHHHHHHHHHH----HHHHHHTSCSEEEEC------------SSEEEECCCTTCHHHHHHHHHHHC-CTTTCCEEECS
T ss_pred CCCHHHHHHHHHH----HHHHHHhCCCeEeec------------cceeeccCCCCCHHHHHHHHHhcC-CCCcceEEEcC
Confidence 4566777766443 333344433223332 245789999999999999998554 46779999999
Q ss_pred ccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhCCCCHHHHHHHHhcCCceE-Ee
Q psy14500 703 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAI-YY 777 (938)
Q Consensus 703 D~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~-~~ 777 (938)
||||||+.+++|+.+++.+ +.++++|+||||.+++....+... +....+ .....+.+.+|++.||++. ..
T Consensus 118 DyVDRGp~S~Evl~lL~aLk~~~P~~v~lLRGNHE~~~l~~~ygF~~----E~~~ky-~~~l~~~~~~~f~~LPlaaii~ 192 (521)
T 1aui_A 118 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQ----ECKIKY-SERVYDACMDAFDCLPLAALMN 192 (521)
T ss_dssp CCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSSHHH----HHHHHS-CHHHHHHHHHHHTTSCCEEEET
T ss_pred CcCCCCCCHHHHHHHHHHHhhhCCCeEEEecCCccHHHHHHHhCccH----HHHHhh-hhHHHHHHHHHHHhCCceEEec
Confidence 9999999999999999987 357899999999998875443211 111111 1123467899999999995 56
Q ss_pred CCEEEEecccCcCCCH
Q psy14500 778 KKYLMIHAGVAKQWTA 793 (938)
Q Consensus 778 ~~~~~vHAg~~p~~~~ 793 (938)
++++|||||++|.+..
T Consensus 193 ~~il~VHGGlsP~~~s 208 (521)
T 1aui_A 193 QQFLCVHGGLSPEINT 208 (521)
T ss_dssp TTEEEESSCCCTTCCS
T ss_pred CCceEECCCcCcccCC
Confidence 7899999999998753
No 98
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.58 E-value=5.1e-15 Score=159.76 Aligned_cols=162 Identities=15% Similarity=0.192 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCC
Q psy14500 433 DEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY 512 (938)
Q Consensus 433 ~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 512 (938)
+..+..+...+.+........+.|. .+||+||||||||++|++||+.+ +.+++.++++++... |
T Consensus 13 ~~~~~~~~~~~~k~~l~~~~~~~p~-~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~------------~ 76 (293)
T 3t15_A 13 PAFMDKLVVHITKNFLKLPNIKVPL-ILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESG------------N 76 (293)
T ss_dssp HHHHHHHHHHHHHTTSCCTTCCCCS-EEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCe-EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhc------------c
Confidence 3444555555554444433444444 78999999999999999999999 789999999876542 3
Q ss_pred ccccccchhHHHH-------HhCCCEEEEEccccccCH-------------HHHHHHHHhhcCCceecCCC--ceeecCC
Q psy14500 513 IGYEEGGYLTEIV-------RRKPYSLILLDEIEKANS-------------DVFNILLQILDDGRLTDNRG--RTINFRN 570 (938)
Q Consensus 513 ~g~~~~~~l~~~~-------~~~~~~vl~lDEid~~~~-------------~~~~~Ll~~le~g~~~~~~g--~~~~~~~ 570 (938)
+|.... .+...+ +...++||||||||++.+ .+++.|+++|+........+ ......+
T Consensus 77 ~g~~~~-~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~ 155 (293)
T 3t15_A 77 AGEPAK-LIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENAR 155 (293)
T ss_dssp --HHHH-HHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCC
T ss_pred CchhHH-HHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCC
Confidence 343322 222223 344789999999998765 46799999999655443222 3345677
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHh--hcCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~--~R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
+++|+|||.... ++++++ +|++.++.+ | +.++..+|+...+
T Consensus 156 v~vI~ttN~~~~------------------------ld~al~R~~R~d~~i~~-P-~~~~r~~Il~~~~ 198 (293)
T 3t15_A 156 VPIIVTGNDFST------------------------LYAPLIRDGRMEKFYWA-P-TREDRIGVCTGIF 198 (293)
T ss_dssp CCEEEECSSCCC--------------------------CHHHHHHHEEEEEEC-C-CHHHHHHHHHHHH
T ss_pred cEEEEecCCccc------------------------CCHHHhCCCCCceeEeC-c-CHHHHHHHHHHhc
Confidence 899999997432 566777 599766653 3 9999999976444
No 99
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.58 E-value=2.7e-14 Score=190.24 Aligned_cols=389 Identities=17% Similarity=0.239 Sum_probs=212.2
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---h-------
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---N------- 121 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~------- 121 (938)
..++||+||||||||+++..+...+ + +..++.++.+..... ..+...++... .
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l-----~----~~~~~~infS~~Tta--------~~l~~~~e~~~e~~~~~~~G~~ 1366 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAF-----P----DFEVVSLNFSSATTP--------ELLLKTFDHHCEYKRTPSGETV 1366 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGC-----T----TEEEEEECCCTTCCH--------HHHHHHHHHHEEEEECTTSCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC-----C----CCceEEEEeeCCCCH--------HHHHHHHhhcceEEeccCCCcc
Confidence 4799999999999998886654433 1 445666776544321 12344443210 0
Q ss_pred -----cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--------------ceEEEEecChhHHHHhhhcCHHH
Q psy14500 122 -----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--------------ELHCIGATTLNEYRQYIEKDAAF 182 (938)
Q Consensus 122 -----~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--------------~i~vI~~tn~~~~~~~~~ld~al 182 (938)
.++..|+||||++. +..+..|.+...+.|++.++.+ ++.+|+|+|++...+...+++++
T Consensus 1367 ~~p~~~Gk~~VlFiDDiNm--p~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf 1444 (3245)
T 3vkg_A 1367 LRPTQLGKWLVVFCDEINL--PSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRF 1444 (3245)
T ss_dssp EEESSTTCEEEEEETTTTC--CCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHH
T ss_pred cCCCcCCceEEEEecccCC--CCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHH
Confidence 12347999999995 4555667777888888888532 46799999987433445799999
Q ss_pred HcccceEEeeCCCHHHHHHHHHhhhhhhhcc-cCC-CCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHH----HH
Q psy14500 183 ERRFQKILVEEPDIEETISILRGLQKKYEVH-HGV-EITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI----KI 256 (938)
Q Consensus 183 ~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~-~~~-~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~----~~ 256 (938)
.|||..+.++.|+.++...|+..+...+... ..+ .+.+..+...+. +.......+ +.
T Consensus 1445 ~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~-----------------ly~~v~~~~lp~~k~ 1507 (3245)
T 3vkg_A 1445 LRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVE-----------------FYSESQKRFTPDIQA 1507 (3245)
T ss_dssp HTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHH-----------------HHHHHHHHSCTTTST
T ss_pred HhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-----------------HHHHHHHhcCCCcCC
Confidence 9999999999999999999987766543211 111 111222222222 222211111 11
Q ss_pred hhcCchhHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14500 257 EIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVR 336 (938)
Q Consensus 257 ~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (938)
.+.+++.++..+-+.+.... ... ...+ ...+...|.+|-.++....-...++..+=
T Consensus 1508 HY~FnLRDLsrv~qGll~~~------~~~-~~~~-----------------~~~lvrLW~HE~~RVF~DRLv~~~Dr~~f 1563 (3245)
T 3vkg_A 1508 HYIYSPRELSRWDRALLEAI------QTM-DGCT-----------------LEGLVRLWAHEALRLFQDRLVETEEKEWT 1563 (3245)
T ss_dssp TCCCCHHHHHHHHHHHHHHH------HTS-SCCC-----------------TTHHHHHHHHHHHHHHTTTCSSHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHhc------Ccc-ccCC-----------------HHHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 23345555554443332210 000 0000 12356688888888776555444443222
Q ss_pred HHHHHhhhcCchHhhhhhhhcchHHHHHHHHHhhhhhccCCCcccccccc--------cccCChHHHHHHHHHhhCCCcc
Q psy14500 337 LKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLL--------KTKVGSEEIAEIVSRTTGIPVS 408 (938)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~v~~~~i~~~~~~~~~~~~~ 408 (938)
.++-.......|.... .... ..+++ -..++.+++.+++......
T Consensus 1564 ~~~l~~~~~~~F~~~~------------------~~~~-------~~pllf~~f~~~~Y~~v~~~~l~~~l~~~L~~--- 1615 (3245)
T 3vkg_A 1564 DKKIDEVALKHFPSVN------------------LDAL-------KRPILYSNWLTKDYQPVNRSDLREYVKARLKV--- 1615 (3245)
T ss_dssp HHHHHHHHHHHCTTSC------------------GGGG-------CSSCCCCSSCC----CCCHHHHHHHHHHHHHT---
T ss_pred HHHHHHHHHHhcCcch------------------hhhc-------ccCcchhhhccccCccCCHHHHHHHHHHHHHH---
Confidence 2211111000110000 0000 00001 1123333333333221100
Q ss_pred ccchHHHHHHHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce
Q psy14500 409 KIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 488 (938)
Q Consensus 409 ~~~~~~~~~l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~ 488 (938)
.. +....-.++=-++|++.+.+..+..+ .|.++.||+|..|+||++++|..|... +..+
T Consensus 1616 -yn----------~~~~~m~LVlF~daleHv~RI~RIL~-------qp~GhaLLVGvgGSGkqSLtrLAa~i~---~~~v 1674 (3245)
T 3vkg_A 1616 -FY----------EEELDVPLVLFNEVLDHILRIDRVFR-------QPQGHALLIGVSGGGKSVLSRFVAWMN---GLSI 1674 (3245)
T ss_dssp -TC----------------CCCCCHHHHHHHHHHHHHHT-------STTCCEEEEESTTSSHHHHHHHHHHHT---TCEE
T ss_pred -HH----------hcccCceEEeHHHHHHHHHHHHHHHc-------cCCCCeEEecCCCCcHHHHHHHHHHHh---CCee
Confidence 00 01122356777888888888877665 566799999999999999999888665 6666
Q ss_pred EEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceec
Q psy14500 489 IRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD 560 (938)
Q Consensus 489 ~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~ 560 (938)
+.+.++.-.+...... +-...+...--...+.+++|+|-+-..+.+++.+..+|..|.+..
T Consensus 1675 fqi~i~k~Y~~~~f~e-----------DLk~l~~~aG~~~~~~vFL~tD~qi~~e~FLE~IN~lL~sGEVP~ 1735 (3245)
T 3vkg_A 1675 YTIKVNNNYKSSDFDD-----------DLRMLLKRAGCKEEKICFIFDESNVLESSFLERMNTLLAGGEVPG 1735 (3245)
T ss_dssp ECCC----CCHHHHHH-----------HHHHHHHHHHTSCCCEEEEEEGGGCSSTHHHHHHHHHHHHSCCTT
T ss_pred EEEeeeCCCCHHHHHH-----------HHHHHHHHHhcCCCCEEEEEeccccccHHHHHHHHHHhccCCccc
Confidence 6666544222111100 000111111124456899999999999999988888888887753
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.58 E-value=4.3e-13 Score=178.47 Aligned_cols=134 Identities=14% Similarity=0.208 Sum_probs=96.5
Q ss_pred HHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHH
Q psy14500 40 IRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEI 119 (938)
Q Consensus 40 ~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a 119 (938)
...+...+.. ..++++.||+|||||++++++|+.+ +..++.++++..... ..+..+|..+
T Consensus 635 ~~tl~~Al~~--~~~~~l~GpaGtGKTe~vk~LA~~l----------g~~~v~~nc~e~ld~--------~~lg~~~~g~ 694 (2695)
T 4akg_A 635 FATLTDSLHQ--KYGGCFFGPAGTGKTETVKAFGQNL----------GRVVVVFNCDDSFDY--------QVLSRLLVGI 694 (2695)
T ss_dssp HHHHHHHHHT--TCEEEEECCTTSCHHHHHHHHHHTT----------TCCCEEEETTSSCCH--------HHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCcccCCCCCCcHHHHHHHHHHh----------CCcEEEEECCCCCCh--------hHhhHHHHHH
Confidence 4444444443 3678999999999999999999998 889999998754421 2456677766
Q ss_pred HhcCCCeEEEEeCccccccCCCCCCccchhhhh-------hhhc--------c-------CCceEEEEecChhHHHHhhh
Q psy14500 120 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNML-------KPEL--------S-------RGELHCIGATTLNEYRQYIE 177 (938)
Q Consensus 120 ~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L-------~~~l--------~-------~~~i~vI~~tn~~~~~~~~~ 177 (938)
...+ +++++||++.+.+ ++.+.+ ...+ . .....+++|+|+ .|.....
T Consensus 695 ~~~G--aw~~~DE~nr~~~--------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP-gy~g~~e 763 (2695)
T 4akg_A 695 TQIG--AWGCFDEFNRLDE--------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP-GYNGRSE 763 (2695)
T ss_dssp HHHT--CEEEEETTTSSCH--------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC-CSSSSCC
T ss_pred HhcC--CEeeehhhhhcCh--------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC-CccCccc
Confidence 6443 5999999998843 333333 1111 1 123557788887 4666678
Q ss_pred cCHHHHcccceEEeeCCCHHHHHHHHH
Q psy14500 178 KDAAFERRFQKILVEEPDIEETISILR 204 (938)
Q Consensus 178 ld~al~~Rf~~i~~~~p~~~e~~~il~ 204 (938)
+++++++||..|.+..|+.+...+|+-
T Consensus 764 LP~~Lk~~Fr~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 764 LPENLKKSFREFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp CCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred ccHHHHhheEEEEeeCCCHHHHHHHHH
Confidence 999999999889999999998888853
No 101
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.58 E-value=1.2e-14 Score=164.03 Aligned_cols=221 Identities=17% Similarity=0.172 Sum_probs=147.1
Q ss_pred HHHHHhcCCCCCccccHHHHHHHHHHHhc----CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14500 21 LTEKARLGKLDPVIGRDDEIRRAIQVLQR----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 96 (938)
Q Consensus 21 l~~~~~~~~~~~lvG~~~~~~~l~~~l~~----~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~ 96 (938)
+...|.| +.++|++++++.+..++.. ....+++|+||||||||++++++++.+..... ....+..++.+++.
T Consensus 12 l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 12 LLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARAS-SLGVLVKPIYVNAR 87 (387)
T ss_dssp HSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHH-HHTCCEEEEEEETT
T ss_pred cCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHh-ccCCCeEEEEEECC
Confidence 4444545 7899999999999998743 55678999999999999999999988743100 00013566777764
Q ss_pred hhhcC--------------ccccch-HHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc----
Q psy14500 97 LLLAG--------------TKYRGE-FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---- 157 (938)
Q Consensus 97 ~l~~~--------------~~~~g~-~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~---- 157 (938)
..... ....|. ....+..++..+...+.+++|||||+|.+.... ..++....+...++
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GGQDLLYRITRINQELGD 164 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---THHHHHHHHHHGGGCC--
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CCChHHHhHhhchhhcCC
Confidence 32110 001121 222344455555444558899999999996531 01233333444443
Q ss_pred CCceEEEEecChhHHHHhhhcCHHHHcccc--eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccc
Q psy14500 158 RGELHCIGATTLNEYRQYIEKDAAFERRFQ--KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 235 (938)
Q Consensus 158 ~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~ 235 (938)
...+.+|++||..++. ..+++++.+||. .+.|++|+.+++..|++..+... ..+..++++++..++..+...
T Consensus 165 ~~~~~~I~~t~~~~~~--~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~-- 238 (387)
T 2v1u_A 165 RVWVSLVGITNSLGFV--ENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA--FNPGVLDPDVVPLCAALAARE-- 238 (387)
T ss_dssp ---CEEEEECSCSTTS--SSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSS--
T ss_pred CceEEEEEEECCCchH--hhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh--
Confidence 5678999999987421 267999999994 59999999999999998776531 135678899999999988721
Q ss_pred cCCCchhhhhHHHHHHHHHH
Q psy14500 236 DRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 236 ~~~~p~~a~~ll~~a~~~~~ 255 (938)
.+.|+.+..+++.+...+.
T Consensus 239 -~G~~r~~~~~l~~a~~~a~ 257 (387)
T 2v1u_A 239 -HGDARRALDLLRVAGEIAE 257 (387)
T ss_dssp -SCCHHHHHHHHHHHHHHHH
T ss_pred -ccCHHHHHHHHHHHHHHHH
Confidence 1234889999988876554
No 102
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.58 E-value=2.7e-14 Score=156.12 Aligned_cols=200 Identities=21% Similarity=0.278 Sum_probs=134.0
Q ss_pred CccccHHHHHHHHHHHhcC---------CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14500 32 PVIGRDDEIRRAIQVLQRR---------SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 102 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~~---------~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~ 102 (938)
.++|++.+++.+...+... +..++||+||||||||++|+++|+.+... +.+++.++++.+....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-------~~~~~~~~~~~~~~~~ 90 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEKH 90 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-------GGGEEEEEGGGCCSTT
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-------CcceEEeecccccccc
Confidence 6799999999988877642 12479999999999999999999988543 4457778876543211
Q ss_pred c----------ccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------
Q psy14500 103 K----------YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------- 159 (938)
Q Consensus 103 ~----------~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------- 159 (938)
. +.|... ...+..+.....+.||||||++.+. .++++.|+..++.+
T Consensus 91 ~~~~l~g~~~~~~~~~~---~~~~~~~~~~~~~~vl~lDEi~~l~--------~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 91 AVSRLIGAPPGYVGYEE---GGQLTEAVRRRPYSVILFDAIEKAH--------PDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHHHCCCTTSTTTTT---CCHHHHHHHHCSSEEEEEETGGGSC--------HHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred cHHHhcCCCCccccccc---cchHHHHHHhCCCeEEEEeChhhcC--------HHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 0 011000 0122222223345799999999983 36777888887643
Q ss_pred ceEEEEecChh---------------HHHH------hhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcc----
Q psy14500 160 ELHCIGATTLN---------------EYRQ------YIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVH---- 213 (938)
Q Consensus 160 ~i~vI~~tn~~---------------~~~~------~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~---- 213 (938)
++++|+|||.. ++.. ...++++|.+||+. +.+++|+.+++..|++.++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 45699999982 1111 11678999999974 8899999999999999887764332
Q ss_pred -cCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHH
Q psy14500 214 -HGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 214 -~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 252 (938)
..+.++++++..++..+... .+-.+....+++.++.
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~---~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERGYDP---VFGARPLRRVIQRELE 276 (311)
T ss_dssp TCEEEECHHHHHHHHHHSCBT---TTBTTTHHHHHHHHTH
T ss_pred CcEEEeCHHHHHHHHHhCCCc---cCCchhHHHHHHHHHH
Confidence 24678999999888864310 1112445555555543
No 103
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.58 E-value=2.3e-14 Score=155.48 Aligned_cols=196 Identities=18% Similarity=0.272 Sum_probs=133.2
Q ss_pred ccccChHHHHHHHHHHHHhhhcC---CCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSG---LSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~---~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.++|++.+++.+...+...... ......+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~---- 93 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK---- 93 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc----
Confidence 56899999999999887543210 00011233489999999999999999999988 678999998775432
Q ss_pred hhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccC-----------HHHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 504 RLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 504 ~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
+.|... .+.+........++||||||+|.+. ...++.|+..++..... ....+
T Consensus 94 --------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~ 159 (297)
T 3b9p_A 94 --------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN------PDGDR 159 (297)
T ss_dssp --------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------C
T ss_pred --------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc------CCCCc
Confidence 222211 1334445566678999999998873 46778888888752111 01245
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
+++|+|||.+. .+.+.+++||+..+.+++++.++...|+...+. ..+
T Consensus 160 v~vi~~tn~~~------------------------~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~-------~~~-- 206 (297)
T 3b9p_A 160 IVVLAATNRPQ------------------------ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQ-------KQG-- 206 (297)
T ss_dssp EEEEEEESCGG------------------------GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHG-------GGS--
T ss_pred EEEEeecCChh------------------------hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHH-------hcC--
Confidence 78889999643 367889999999999999999998888655443 223
Q ss_pred EEEcHHHHHHHHhhcccccccccccccc
Q psy14500 651 LKISKAALKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 651 l~~~~~~~~~L~~~~~~~~~~~~dl~~~ 678 (938)
..++++.++.|+... ..+..+++...
T Consensus 207 ~~~~~~~~~~la~~~--~g~~~~~l~~l 232 (297)
T 3b9p_A 207 SPLDTEALRRLAKIT--DGYSGSDLTAL 232 (297)
T ss_dssp CCSCHHHHHHHHHHT--TTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHc--CCCCHHHHHHH
Confidence 346788888888743 33333455443
No 104
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.57 E-value=1.6e-16 Score=194.26 Aligned_cols=199 Identities=21% Similarity=0.322 Sum_probs=145.6
Q ss_pred CCCCCccccHHHHHHHHHHHhc-------------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 94 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~~-------------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~ 94 (938)
-++++++|.+++.+.+...+.. ..+.++||+||||||||++|+++|..+ +..++.++
T Consensus 474 v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v~ 543 (806)
T 1ypw_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 543 (806)
T ss_dssp CSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCCCC
T ss_pred ccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEEEe
Confidence 3678999999999988886642 345679999999999999999999998 56677777
Q ss_pred hhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC------ccchhhhhhhhcc----CCceEEE
Q psy14500 95 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG------SIDAGNMLKPELS----RGELHCI 164 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~------~~~~~~~L~~~l~----~~~i~vI 164 (938)
++.+. .+|.|+.+..++.+|+.+.... |+||||||+|.+...+.... ...+.+.|+..|+ ...+++|
T Consensus 544 ~~~l~--~~~~g~~~~~i~~~f~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI 620 (806)
T 1ypw_A 544 GPELL--TMWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp CSSST--TCCTTTSSHHHHHHHHHHHHHC-SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCC
T ss_pred chHhh--hhhcCccHHHHHHHHHHHHhcC-CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEE
Confidence 77766 5678888889999999988554 78999999999987664321 1224456666664 3578999
Q ss_pred EecChhHHHHhhhcCHHHHc--ccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCch
Q psy14500 165 GATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 241 (938)
Q Consensus 165 ~~tn~~~~~~~~~ld~al~~--Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 241 (938)
+|||.++ .+|++++| ||+. |+|+.|+.+++..||+.++.......++.+ ..++..+.+ +.++
T Consensus 621 ~tTN~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l-----~~la~~t~g-----~sga 685 (806)
T 1ypw_A 621 GATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL-----EFLAKMTNG-----FSGA 685 (806)
T ss_dssp CCCBSCG-----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCC-----SCSCGGGSS-----SCCH
T ss_pred EecCCcc-----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCH-----HHHHHhccc-----cCHH
Confidence 9999998 79999999 9985 999999999999999988765433323322 222333333 3355
Q ss_pred hhhhHHHHHHHHH
Q psy14500 242 KAIDLIDEAAAKI 254 (938)
Q Consensus 242 ~a~~ll~~a~~~~ 254 (938)
....++..++...
T Consensus 686 di~~l~~~a~~~a 698 (806)
T 1ypw_A 686 DLTEICQRACKLA 698 (806)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5566666655443
No 105
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.57 E-value=5e-14 Score=154.89 Aligned_cols=199 Identities=12% Similarity=0.149 Sum_probs=131.4
Q ss_pred CCCCCcc-cc--HHHHHHHHHHHhcC--CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14500 28 GKLDPVI-GR--DDEIRRAIQVLQRR--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 102 (938)
Q Consensus 28 ~~~~~lv-G~--~~~~~~l~~~l~~~--~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~ 102 (938)
.+|++++ |+ ......+..++..+ ..++++|+||||||||++++++++.+... +.+++.+++..+..
T Consensus 8 ~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~~-- 78 (324)
T 1l8q_A 8 YTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFAQ-- 78 (324)
T ss_dssp CCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHH--
T ss_pred CCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHHH--
Confidence 4889997 53 34555555555544 35789999999999999999999988543 45778888766531
Q ss_pred cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHHH
Q psy14500 103 KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAF 182 (938)
Q Consensus 103 ~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al 182 (938)
.+.+.........|..... .+.+|||||++.+..... ....+...+....+.+..+++++++++. ....+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~--~~~vL~iDEi~~l~~~~~--~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l~~~L 152 (324)
T 1l8q_A 79 AMVEHLKKGTINEFRNMYK--SVDLLLLDDVQFLSGKER--TQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGVSDRL 152 (324)
T ss_dssp HHHHHHHHTCHHHHHHHHH--TCSEEEEECGGGGTTCHH--HHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTSCHHH
T ss_pred HHHHHHHcCcHHHHHHHhc--CCCEEEEcCcccccCChH--HHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHhhhHh
Confidence 1222221111112222221 255999999999854210 0112233333344556666666655543 122589999
Q ss_pred Hcccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHH
Q psy14500 183 ERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 253 (938)
Q Consensus 183 ~~Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~ 253 (938)
.+||. .+.|++ +.+++..|++..+.. .++.++++++..++..+ +.+ +.+...++.++..
T Consensus 153 ~sR~~~~~~i~l~~-~~~e~~~il~~~~~~----~~~~l~~~~l~~l~~~~-g~~------r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 153 VSRFEGGILVEIEL-DNKTRFKIIKEKLKE----FNLELRKEVIDYLLENT-KNV------REIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHTSEEEECCC-CHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHC-SSH------HHHHHHHHHHHHH
T ss_pred hhcccCceEEEeCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhC-CCH------HHHHHHHHHHHHc
Confidence 99994 589999 999999999988764 46789999999999988 766 6666777666543
No 106
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.56 E-value=6.3e-14 Score=158.03 Aligned_cols=224 Identities=17% Similarity=0.124 Sum_probs=149.4
Q ss_pred HHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhc----CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC-CC
Q psy14500 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQR----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL-SK 88 (938)
Q Consensus 14 ~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~----~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~-~~ 88 (938)
+.+-...|..+|+| ++++|++++++.+...+.. ..+.+++|+||||||||++|+++++.+........-. +.
T Consensus 6 i~~~~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~ 82 (384)
T 2qby_B 6 IKNPKVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDV 82 (384)
T ss_dssp -CCTTTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTC
T ss_pred ccccHhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCc
Confidence 33445677888888 7899999999998876653 4456899999999999999999999874320000001 45
Q ss_pred eEEEEehhhhh-cCc---------------cccch-HHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccch-hh
Q psy14500 89 KILLLDIALLL-AGT---------------KYRGE-FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDA-GN 150 (938)
Q Consensus 89 ~~~~~~~~~l~-~~~---------------~~~g~-~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~-~~ 150 (938)
.++.+++.... ... ...+. ....+..++..+. .. +.||||||+|.+.... ..+. ..
T Consensus 83 ~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~-~~vlilDEi~~l~~~~----~~~~~l~ 156 (384)
T 2qby_B 83 KQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NI-RAIIYLDEVDTLVKRR----GGDIVLY 156 (384)
T ss_dssp EEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SS-CEEEEEETTHHHHHST----TSHHHHH
T ss_pred eEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cC-CCEEEEECHHHhccCC----CCceeHH
Confidence 77788865432 000 00111 1222333333333 22 3399999999996532 1233 33
Q ss_pred hhhhhccCCceEEEEecChhHHHHhhhcCHHHHcccc-eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHh
Q psy14500 151 MLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASEL 229 (938)
Q Consensus 151 ~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~ 229 (938)
.|.... ..+.+|++||..++. ..+++++.+||. .+.|++|+.+++..+++..+.. ...+..++++++..++..
T Consensus 157 ~l~~~~--~~~~iI~~t~~~~~~--~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~--~~~~~~~~~~~~~~i~~~ 230 (384)
T 2qby_B 157 QLLRSD--ANISVIMISNDINVR--DYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY--GLIKGTYDDEILSYIAAI 230 (384)
T ss_dssp HHHTSS--SCEEEEEECSSTTTT--TTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH--TSCTTSCCSHHHHHHHHH
T ss_pred HHhcCC--cceEEEEEECCCchH--hhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh--hcccCCcCHHHHHHHHHH
Confidence 444433 689999999987421 267999999985 5999999999999999877652 112457889999999998
Q ss_pred hhhccccCCCchhhhhHHHHHHHHHH
Q psy14500 230 SYRYISDRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 230 s~~~~~~~~~p~~a~~ll~~a~~~~~ 255 (938)
+.+. .+-++.+.++++.+...+.
T Consensus 231 ~~~~---~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 231 SAKE---HGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp HHTT---CCCHHHHHHHHHHHHHHTT
T ss_pred HHhc---cCCHHHHHHHHHHHHHHhc
Confidence 8721 1233888888888876554
No 107
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.56 E-value=2.6e-14 Score=149.79 Aligned_cols=199 Identities=11% Similarity=0.063 Sum_probs=140.1
Q ss_pred hHHHHHhc-CCCCCcccc---HHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 20 DLTEKARL-GKLDPVIGR---DDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 20 ~l~~~~~~-~~~~~lvG~---~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
.+..+++| .+|++++|. ...++.+..++......+++|+||||||||++++++++.+... +..++.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~ 88 (242)
T 3bos_A 16 SLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPL 88 (242)
T ss_dssp EEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEG
T ss_pred CCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEH
Confidence 45666776 799999973 4677777777776677899999999999999999999988543 456777777
Q ss_pred hhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhh----ccCCceEEEEecChhH
Q psy14500 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE----LSRGELHCIGATTLNE 171 (938)
Q Consensus 96 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~----l~~~~i~vI~~tn~~~ 171 (938)
..+..... ..+..+ ..+.+|||||++.+.... ...+.|... .+.+.+.+|++|+...
T Consensus 89 ~~~~~~~~----------~~~~~~---~~~~vliiDe~~~~~~~~------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 89 GIHASIST----------ALLEGL---EQFDLICIDDVDAVAGHP------LWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGGGGSCG----------GGGTTG---GGSSEEEEETGGGGTTCH------HHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred HHHHHHHH----------HHHHhc---cCCCEEEEeccccccCCH------HHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 66543211 111111 235599999999985421 113334443 3455554555555332
Q ss_pred HHHhhhcCHHHHccc---ceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHH
Q psy14500 172 YRQYIEKDAAFERRF---QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 248 (938)
Q Consensus 172 ~~~~~~ld~al~~Rf---~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 248 (938)
......++++.+|| ..+.|++|+.+++..+++.++.. .++.+++++++.++..+.+.+ +.+..+++
T Consensus 150 -~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~------r~l~~~l~ 218 (242)
T 3bos_A 150 -MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM----RGLQLPEDVGRFLLNRMARDL------RTLFDVLD 218 (242)
T ss_dssp -TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH----TTCCCCHHHHHHHHHHTTTCH------HHHHHHHH
T ss_pred -HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCCH------HHHHHHHH
Confidence 01123568999999 56999999999999999887764 467899999999999887766 88888888
Q ss_pred HHHHHHH
Q psy14500 249 EAAAKIK 255 (938)
Q Consensus 249 ~a~~~~~ 255 (938)
.++....
T Consensus 219 ~~~~~a~ 225 (242)
T 3bos_A 219 RLDKASM 225 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776553
No 108
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.56 E-value=5e-14 Score=149.84 Aligned_cols=165 Identities=21% Similarity=0.272 Sum_probs=108.9
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLS---DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~---~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.++|++.+++.+...+........ ....+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~---- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV---- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS----
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh----
Confidence 5689999999999887764332111 011233479999999999999999999998 778999999876432
Q ss_pred hhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccC------------HHH---HHHHHHhhcCCceecCCCcee
Q psy14500 504 RLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN------------SDV---FNILLQILDDGRLTDNRGRTI 566 (938)
Q Consensus 504 ~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~------------~~~---~~~Ll~~le~g~~~~~~g~~~ 566 (938)
+.|... ...++.......++||||||+|.+. ... ++.|+..++.. .
T Consensus 79 --------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---------~ 141 (262)
T 2qz4_A 79 --------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM---------G 141 (262)
T ss_dssp --------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC---------C
T ss_pred --------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc---------C
Confidence 112111 1223334444557999999999983 233 34455545431 0
Q ss_pred ecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHH
Q psy14500 567 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 639 (938)
Q Consensus 567 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~ 639 (938)
...++++|+|||... .+++.+++ ||+..+.|++++.++..+|+...+..
T Consensus 142 ~~~~~~vi~~tn~~~------------------------~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 142 TTDHVIVLASTNRAD------------------------ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp TTCCEEEEEEESCGG------------------------GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCChh------------------------hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 234678899999633 24567777 99999999999999999997776654
No 109
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.56 E-value=2.6e-14 Score=152.90 Aligned_cols=178 Identities=17% Similarity=0.169 Sum_probs=122.0
Q ss_pred CCCccccHHHHHHHHH-------HHh---cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh
Q psy14500 30 LDPVIGRDDEIRRAIQ-------VLQ---RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL 99 (938)
Q Consensus 30 ~~~lvG~~~~~~~l~~-------~l~---~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~ 99 (938)
...++|++..++.++. .+. ...+.++||+||||||||++|+++|+.+ +.+++.+++....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~ 101 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKM 101 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHh
Confidence 3578999887766665 332 4556789999999999999999999987 6788888776533
Q ss_pred cCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCC--ccchhhhhhhhcc-----CCceEEEEecChhHH
Q psy14500 100 AGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG--SIDAGNMLKPELS-----RGELHCIGATTLNEY 172 (938)
Q Consensus 100 ~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~--~~~~~~~L~~~l~-----~~~i~vI~~tn~~~~ 172 (938)
.+. ..+.....++.+|..+.. ..+.+|||||+|.|.+...... ...+.+.|...++ ...+++|+|||.++
T Consensus 102 ~g~-~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~- 178 (272)
T 1d2n_A 102 IGF-SETAKCQAMKKIFDDAYK-SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD- 178 (272)
T ss_dssp TTC-CHHHHHHHHHHHHHHHHT-SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH-
T ss_pred cCC-chHHHHHHHHHHHHHHHh-cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh-
Confidence 221 122333467777877763 4478999999999976443211 2234555655554 23678999999887
Q ss_pred HHhhhcCH-HHHcccce-EEeeCCCH-HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhc
Q psy14500 173 RQYIEKDA-AFERRFQK-ILVEEPDI-EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 233 (938)
Q Consensus 173 ~~~~~ld~-al~~Rf~~-i~~~~p~~-~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 233 (938)
.+++ .+.+||.. +.+|+++. ++...++.. . ..++++++..++..+.+|
T Consensus 179 ----~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~---~------~~~~~~~~~~l~~~~~g~ 229 (272)
T 1d2n_A 179 ----VLQEMEMLNAFSTTIHVPNIATGEQLLEALEL---L------GNFKDKERTTIAQQVKGK 229 (272)
T ss_dssp ----HHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH---H------TCSCHHHHHHHHHHHTTS
T ss_pred ----hcchhhhhcccceEEcCCCccHHHHHHHHHHh---c------CCCCHHHHHHHHHHhcCC
Confidence 5566 67889874 77776655 444444432 1 246888999999988774
No 110
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.56 E-value=4e-14 Score=158.11 Aligned_cols=208 Identities=21% Similarity=0.269 Sum_probs=137.7
Q ss_pred ccccHHHHHHHHHHHh-------------c--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh
Q psy14500 33 VIGRDDEIRRAIQVLQ-------------R--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL 97 (938)
Q Consensus 33 lvG~~~~~~~l~~~l~-------------~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~ 97 (938)
++|++.+++.+...+. . ..+.++||+||||||||++|+++|+.+ +.+++.++++.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~ 86 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATT 86 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHH
Confidence 7999999999888773 1 256789999999999999999999998 78899999987
Q ss_pred hhcCccccchH-HHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCCC-c-----cchhhhhhhhccCC--------
Q psy14500 98 LLAGTKYRGEF-EDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEG-S-----IDAGNMLKPELSRG-------- 159 (938)
Q Consensus 98 l~~~~~~~g~~-~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~-~-----~~~~~~L~~~l~~~-------- 159 (938)
+.. ..+.|.. ...+..++..+. ....++||||||+|.+.+.+.... + ..+++.|+..|+..
T Consensus 87 l~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~ 165 (363)
T 3hws_A 87 LTE-AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQG 165 (363)
T ss_dssp HTT-CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------
T ss_pred hcc-cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCcc
Confidence 653 2345543 345566655431 112256999999999987643321 1 12678888888721
Q ss_pred ---------------ceEEEEecChhHHHHh----------------------------------------hhcCHHHHc
Q psy14500 160 ---------------ELHCIGATTLNEYRQY----------------------------------------IEKDAAFER 184 (938)
Q Consensus 160 ---------------~i~vI~~tn~~~~~~~----------------------------------------~~ld~al~~ 184 (938)
++.+|++++...+... ..+.|+|.+
T Consensus 166 ~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~ 245 (363)
T 3hws_A 166 GRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 245 (363)
T ss_dssp --------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT
T ss_pred ccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc
Confidence 2234455443211110 116899999
Q ss_pred ccce-EEeeCCCHHHHHHHHHh----hhhhhhc-----ccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHH
Q psy14500 185 RFQK-ILVEEPDIEETISILRG----LQKKYEV-----HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 254 (938)
Q Consensus 185 Rf~~-i~~~~p~~~e~~~il~~----~~~~~~~-----~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 254 (938)
||+. +.|.+|+.+++..|+.. +..++.. ...+.+++++++.++..+...- +-.+....+++.++...
T Consensus 246 R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~---~gaR~L~~~ie~~~~~~ 322 (363)
T 3hws_A 246 RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARK---TGARGLRSIVEAALLDT 322 (363)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTT---CTTTTHHHHHHHHHHHH
T ss_pred ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCc---cCchHHHHHHHHHHHHH
Confidence 9997 66999999999999986 4444322 2235689999999987643321 11244455555555443
No 111
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=99.55 E-value=9.4e-15 Score=156.72 Aligned_cols=154 Identities=19% Similarity=0.293 Sum_probs=109.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCcccccccc
Q psy14500 623 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 702 (938)
Q Consensus 623 ~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~G 702 (938)
+++++++..|+.. ..+.+..+..-+.++..- ......+.+|||||++++|.++++..++.+..+.++|+|
T Consensus 30 ~l~~~~~~~l~~~----~~~il~~ep~~~~l~~p~------~~~~ri~viGDIHG~~~~L~~ll~~~g~~~~~~~~vflG 99 (335)
T 3icf_A 30 YLPKKYVAAIISH----ADTLFRQEPSMVELENNS------TPDVKISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNG 99 (335)
T ss_dssp CCCHHHHHHHHHH----HHHHHHTSCSEEEECCSS------STTCEEEEECCCTTCHHHHHHHHHHHCCCBTTEEEEECS
T ss_pred CCCHHHHHHHHHH----HHHHHHhCCCeEEecCCc------ccCceEEEEecCCCCHHHHHHHHHHcCCCCCCcEEEEeC
Confidence 5677777777544 334444444333432100 001125789999999999999999999866667799999
Q ss_pred ccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhCCCCHHHHHHHHhcCCceEEeC
Q psy14500 703 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK 778 (938)
Q Consensus 703 D~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~~ 778 (938)
|+||||+.+++|+.+++.+ ++++++|+||||.+.++...+... ...........+.+.+|++.||++...+
T Consensus 100 D~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygf~~-----e~~~k~~~~l~~~~~~~f~~LPlaaii~ 174 (335)
T 3icf_A 100 DFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDNMNKIYGFED-----ECKYKYSQRIFNMFAQSFESLPLATLIN 174 (335)
T ss_dssp CCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHHSHHH-----HHHHHSCHHHHHHHHHHHTTSCSEEEET
T ss_pred CccCCCcChHHHHHHHHHHhhhCCCcEEEecCchhhhhhhhccccch-----HhHhhccHHHHHHHHHHHhhcceeEEEc
Confidence 9999999999999999887 367899999999998875543211 1111122233577899999999987654
Q ss_pred -CEEEEeccc-CcCC
Q psy14500 779 -KYLMIHAGV-AKQW 791 (938)
Q Consensus 779 -~~~~vHAg~-~p~~ 791 (938)
++++||||+ +|.+
T Consensus 175 ~~il~vHGGl~sp~~ 189 (335)
T 3icf_A 175 NDYLVMHGGLPSDPS 189 (335)
T ss_dssp TTEEECSSCCCSCTT
T ss_pred CcEEEecCCcCCCcc
Confidence 899999999 6654
No 112
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.55 E-value=3e-14 Score=158.54 Aligned_cols=215 Identities=17% Similarity=0.213 Sum_probs=134.8
Q ss_pred hcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcC----CCCCCcC---------------
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIING----EVPNSLL--------------- 86 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~----~~p~~~~--------------- 86 (938)
+|.+|++++|++..++.+...+......++||+||||||||++|+++++.+... ..|....
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTN 98 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccc
Confidence 567899999999977776555555556789999999999999999999987420 1111000
Q ss_pred ----CCeEEEEehhhhhcCccccchHHHHHHHHHHHHH--------hcCCCeEEEEeCccccccCCCCCCccchhhhhhh
Q psy14500 87 ----SKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS--------NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKP 154 (938)
Q Consensus 87 ----~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~--------~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~ 154 (938)
..+++.+..+... ....|.. .+...+.... ....+.+|||||++.+.+ +.++.|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~--~~l~g~~--~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~--------~~~~~Ll~ 166 (350)
T 1g8p_A 99 VIRKPTPVVDLPLGVSE--DRVVGAL--DIERAISKGEKAFEPGLLARANRGYLYIDECNLLED--------HIVDLLLD 166 (350)
T ss_dssp EEEECCCEEEECTTCCH--HHHHCEE--CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH--------HHHHHHHH
T ss_pred cccCCCcccccCCCcch--hhheeec--hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCH--------HHHHHHHH
Confidence 0112222211000 0001100 0011111110 001256999999999843 55667777
Q ss_pred hccCC---------------ceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCC-CHHHHHHHHHhhhh---------
Q psy14500 155 ELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEP-DIEETISILRGLQK--------- 208 (938)
Q Consensus 155 ~l~~~---------------~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p-~~~e~~~il~~~~~--------- 208 (938)
.++.+ .+++|++||+.+ ..++++|++||.. +.+++| +.+++..|++....
T Consensus 167 ~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~----~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~ 242 (350)
T 1g8p_A 167 VAQSGENVVERDGLSIRHPARFVLVGSGNPEE----GDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFL 242 (350)
T ss_dssp HHHHSEEEECCTTCCEEEECCEEEEEEECSCS----CCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHhcCceEEEecceEEeeCCceEEEEEeCCCC----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhc
Confidence 77653 688999999743 2689999999986 999999 57777788865211
Q ss_pred ----------------hhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHHHhh
Q psy14500 209 ----------------KYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEI 258 (938)
Q Consensus 209 ----------------~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~ 258 (938)
......++.++++++..++..+.+.- ...++.+..+++.+...+....
T Consensus 243 ~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~--~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 243 EEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALG--SDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSS--SCSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHHHHHHcC
Confidence 01123456899999999998876621 1134778888887776665443
No 113
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.55 E-value=3.7e-14 Score=157.77 Aligned_cols=206 Identities=15% Similarity=0.186 Sum_probs=124.2
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc----CCCceEEeccccccchhh-
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----NEESIIRIDMSEFIEKHS- 501 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~----~~~~~~~~~~~~~~~~~~- 501 (938)
+.++|++.++..+........ .+++||+||||||||++|+++++.+.. .+.+ ++|........
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~---------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~---~~~~~~~~~~~~ 91 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG---------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCP---VSSPNVEMIPDW 91 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG---------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCT---TCCSSGGGSCTT
T ss_pred hhccChHHHHHHHHHHhhCCC---------CceEEEECCCCccHHHHHHHHHHhCcccccccccc---ccccccccccch
Confidence 458899997776544433211 126999999999999999999998742 1122 23322211000
Q ss_pred -----------------------hhhhcCCCCC---CccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcC
Q psy14500 502 -----------------------ISRLIGAPPG---YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDD 555 (938)
Q Consensus 502 -----------------------~~~l~g~~~~---~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~ 555 (938)
...++|...- +.+ .......+.+..+.++|||||||+.+++..++.|++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~ 170 (350)
T 1g8p_A 92 ATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISK-GEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQS 170 (350)
T ss_dssp CCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHH-CGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred hhhhccccccCCCcccccCCCcchhhheeechhhhhhcC-CceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhc
Confidence 1112221000 000 0000001122334578999999999999999999999998
Q ss_pred Ccee--cCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCC-HHHHHHH
Q psy14500 556 GRLT--DNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN-RKNILSI 632 (938)
Q Consensus 556 g~~~--~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~-~e~~~~i 632 (938)
+... ..++......++++|+|||... ..++++|++||+..+.+++++ .++..+|
T Consensus 171 ~~~~~~~~g~~~~~~~~~~li~~~n~~~-----------------------~~l~~~L~~R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 171 GENVVERDGLSIRHPARFVLVGSGNPEE-----------------------GDLRPQLLDRFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp SEEEECCTTCCEEEECCEEEEEEECSCS-----------------------CCCCHHHHTTCSEEEECCCCCSHHHHHHH
T ss_pred CceEEEecceEEeeCCceEEEEEeCCCC-----------------------CCCCHHHHhhcceEEEcCCCCcHHHHHHH
Confidence 7533 3322223345788999999522 247899999998789999994 5555577
Q ss_pred HHHHHHHH-----------------HHH---HHccCCeEEEcHHHHHHHHhhcccc
Q psy14500 633 ANIQLNIL-----------------KNK---LLKMNMDLKISKAALKKISNIGFDL 668 (938)
Q Consensus 633 ~~~~l~~~-----------------~~~---~~~~~~~l~~~~~~~~~L~~~~~~~ 668 (938)
+...+... ... .+.....+.++++++++|.+..+..
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~ 283 (350)
T 1g8p_A 228 IRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIAL 283 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHS
T ss_pred HHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHh
Confidence 76532210 011 1111223589999999999865543
No 114
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.55 E-value=6.4e-14 Score=157.32 Aligned_cols=208 Identities=21% Similarity=0.280 Sum_probs=132.1
Q ss_pred CccccHHHHHHHHHHHh------------------------------cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCC
Q psy14500 32 PVIGRDDEIRRAIQVLQ------------------------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEV 81 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~------------------------------~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~ 81 (938)
.++||+.+++.+...+. .....++||+||||||||++|+++|+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 58999999988887662 1246789999999999999999999988
Q ss_pred CCCcCCCeEEEEehhhhhcCccccchH-HHHHHHHHHHHH---hcCCCeEEEEeCccccccCCCCC------Cccchhhh
Q psy14500 82 PNSLLSKKILLLDIALLLAGTKYRGEF-EDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVE------GSIDAGNM 151 (938)
Q Consensus 82 p~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~------~~~~~~~~ 151 (938)
+.+++.+++..+.. ..+.|.. +..+..++.... ....+.||||||++.+...+... ....+++.
T Consensus 97 -----~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~ 170 (376)
T 1um8_A 97 -----DIPIAISDATSLTE-AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQA 170 (376)
T ss_dssp -----TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHH
T ss_pred -----CCCEEEecchhhhh-cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHH
Confidence 67888888876542 2233332 333444444321 01135699999999997653211 11126788
Q ss_pred hhhhccCC-----------------------ceEEEEecChhHHHH----------------------------------
Q psy14500 152 LKPELSRG-----------------------ELHCIGATTLNEYRQ---------------------------------- 174 (938)
Q Consensus 152 L~~~l~~~-----------------------~i~vI~~tn~~~~~~---------------------------------- 174 (938)
|+..++.+ ++.+|+++|......
T Consensus 171 Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T 1um8_A 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHD 250 (376)
T ss_dssp HHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHH
T ss_pred HHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHH
Confidence 88888743 347777776321110
Q ss_pred --hhhcCHHHHcccce-EEeeCCCHHHHHHHHH----hhhhhhhc-----ccCCCCCHHHHHHHHHhhhhccccCCCchh
Q psy14500 175 --YIEKDAAFERRFQK-ILVEEPDIEETISILR----GLQKKYEV-----HHGVEITDPAIVAASELSYRYISDRFMPDK 242 (938)
Q Consensus 175 --~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~----~~~~~~~~-----~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 242 (938)
...+.|+|.+||.. +.|++++.++...|+. .+..++.. ..++.++++++..++..+.. ..+-.+.
T Consensus 251 l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~---~~~~~R~ 327 (376)
T 1um8_A 251 LVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE---RKTGARG 327 (376)
T ss_dssp HHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH---TTCTGGG
T ss_pred HhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcc---cccCcHH
Confidence 12467999999964 9999999999999997 34333221 23467899999999887541 0111256
Q ss_pred hhhHHHHHHHH
Q psy14500 243 AIDLIDEAAAK 253 (938)
Q Consensus 243 a~~ll~~a~~~ 253 (938)
...+++.++..
T Consensus 328 L~~~le~~~~~ 338 (376)
T 1um8_A 328 LRAIIEDFCLD 338 (376)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 66666666544
No 115
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=99.54 E-value=1.4e-14 Score=155.78 Aligned_cols=148 Identities=19% Similarity=0.264 Sum_probs=107.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHhcccCCcccccccc
Q psy14500 623 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 702 (938)
Q Consensus 623 ~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~G 702 (938)
.++++++.+|+.. ..+.+..+..-+.++ .+.+.+|||||++.+|.++++..+. ++.+.++|+|
T Consensus 42 ~l~~~~~~~l~~~----~~~il~~ep~ll~~~------------~pi~ViGDIHG~~~dL~~ll~~~g~-~~~~~~vfLG 104 (357)
T 3ll8_A 42 RLEESVALRIITE----GASILRQEKNLLDID------------APVTVCGDIHGQFFDLMKLFEVGGS-PANTRYLFLG 104 (357)
T ss_dssp CBCHHHHHHHHHH----HHHHHHTSCSEEEEC------------SSEEEECCCTTCHHHHHHHHHHHCC-TTTCCEEECS
T ss_pred CCCHHHHHHHHHH----HHHHHHhCCCeEEec------------ccceeeccCCCCHHHHHHHHHhcCC-CCCcEEEECC
Confidence 3566666666444 333344443333332 3557899999999999999987775 5678999999
Q ss_pred ccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccccCCccccHHHhhCCCCHHHHHHHHhcCCceEE-e
Q psy14500 703 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-Y 777 (938)
Q Consensus 703 D~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~-~ 777 (938)
|++|||+.+++|+.+++.+ ++++++|+||||.+.+....+... ...........+.+.+|++.||+... .
T Consensus 105 D~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygF~~-----E~~~ky~~~l~~~~~~~f~~LPlaaii~ 179 (357)
T 3ll8_A 105 DYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQ-----ECKIKYSERVYDACMDAFDCLPLAALMN 179 (357)
T ss_dssp CCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHSSHHH-----HHHHHSCHHHHHHHHHHHHTSCSEEEET
T ss_pred CccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchhhhhhhcccCchh-----hhhhccchhHHHHHHHHHHhCCcceEEc
Confidence 9999999999999999887 357899999999998875543211 11111122234778999999999865 4
Q ss_pred CCEEEEecccCcCCC
Q psy14500 778 KKYLMIHAGVAKQWT 792 (938)
Q Consensus 778 ~~~~~vHAg~~p~~~ 792 (938)
+++++||||++|.+.
T Consensus 180 ~~il~vHGGlsp~l~ 194 (357)
T 3ll8_A 180 QQFLCVHGGLSPEIN 194 (357)
T ss_dssp TTEEECSSCCCTTCC
T ss_pred ccEEEEecCcCcccC
Confidence 689999999999763
No 116
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.54 E-value=3e-14 Score=151.89 Aligned_cols=183 Identities=16% Similarity=0.133 Sum_probs=112.5
Q ss_pred CCCCCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc---
Q psy14500 28 GKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT--- 102 (938)
Q Consensus 28 ~~~~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~--- 102 (938)
.+|++++|++..++.+...+.. ....++||+||||||||++|+++++.+... +.+++.++++.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~~~~~~ 75 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDS 75 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCHHHHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCChhHHHH
Confidence 3789999999999988876653 456889999999999999999999876332 4578888886542100
Q ss_pred cc----cchHHHH---HHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceE
Q psy14500 103 KY----RGEFEDR---LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELH 162 (938)
Q Consensus 103 ~~----~g~~~~~---l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~ 162 (938)
.. .|.+... ....+..+ .+.+|||||++.+.. +.++.|...++.+ .++
T Consensus 76 ~l~g~~~~~~~g~~~~~~~~l~~a----~~~~l~lDEi~~l~~--------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~ 143 (265)
T 2bjv_A 76 ELFGHEAGAFTGAQKRHPGRFERA----DGGTLFLDELATAPM--------MVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (265)
T ss_dssp HHHCCC---------CCCCHHHHT----TTSEEEEESGGGSCH--------HHHHHHHHHHHHCEECCCCC--CEECCCE
T ss_pred HhcCCcccccccccccccchhhhc----CCcEEEEechHhcCH--------HHHHHHHHHHHhCCeecCCCcccccCCeE
Confidence 00 0000000 01122222 234999999999843 5566777777643 578
Q ss_pred EEEecChhHHHH--hhhcCHHHHcccceEEeeCCCH----HHHHHHHHhhhhhhhcccCC----CCCHHHHHHHHHh
Q psy14500 163 CIGATTLNEYRQ--YIEKDAAFERRFQKILVEEPDI----EETISILRGLQKKYEVHHGV----EITDPAIVAASEL 229 (938)
Q Consensus 163 vI~~tn~~~~~~--~~~ld~al~~Rf~~i~~~~p~~----~e~~~il~~~~~~~~~~~~~----~i~~~~l~~~~~~ 229 (938)
+|+|||.+.... .-.+.++|.+||..+.+..|+. ++...++++++.++....+. .++++++..+...
T Consensus 144 iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~ 220 (265)
T 2bjv_A 144 LVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNY 220 (265)
T ss_dssp EEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHS
T ss_pred EEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhC
Confidence 999999853211 1246799999997544444443 45566666666554443343 6889888877654
No 117
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.54 E-value=6.1e-14 Score=148.73 Aligned_cols=196 Identities=19% Similarity=0.306 Sum_probs=127.5
Q ss_pred ccccChHHHHHHHHHHHHhhhcC--CCC-CCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSG--LSD-AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~--~~~-~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.++|++.+++.+...+...... +.. ...+..+++|+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~---- 84 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM---- 84 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS----
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH----
Confidence 56889999998888776543210 000 01122369999999999999999999988 678999998876532
Q ss_pred hhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCCceee
Q psy14500 504 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRTIN 567 (938)
Q Consensus 504 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~ 567 (938)
+.|.... +.++.......++++||||+|.+.+ ..++.++..++.-. .
T Consensus 85 --------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~ 147 (257)
T 1lv7_A 85 --------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE---------G 147 (257)
T ss_dssp --------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC---------S
T ss_pred --------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc---------c
Confidence 2222211 2233344445568999999987643 46677888776411 2
Q ss_pred cCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHHHHHHHH
Q psy14500 568 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILKNKLL 645 (938)
Q Consensus 568 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~ 645 (938)
..++++|+|||... .+++.+++ ||+..+.+++++.++..+|+...+..
T Consensus 148 ~~~~~vI~~tn~~~------------------------~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~------ 197 (257)
T 1lv7_A 148 NEGIIVIAATNRPD------------------------VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR------ 197 (257)
T ss_dssp SSCEEEEEEESCTT------------------------TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT------
T ss_pred CCCEEEEEeeCCch------------------------hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc------
Confidence 35678899999743 25566665 99999999999999998886554432
Q ss_pred ccCCeEEEcHHH-HHHHHhhcccccccccccccchHHHHHHH
Q psy14500 646 KMNMDLKISKAA-LKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 646 ~~~~~l~~~~~~-~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
.. +++++ ...++. ..+.|..+||.+. +.++.
T Consensus 198 -~~----l~~~~~~~~la~--~~~G~~~~dl~~l---~~~a~ 229 (257)
T 1lv7_A 198 -VP----LAPDIDAAIIAR--GTPGFSGADLANL---VNEAA 229 (257)
T ss_dssp -SC----BCTTCCHHHHHH--TCTTCCHHHHHHH---HHHHH
T ss_pred -CC----CCccccHHHHHH--HcCCCCHHHHHHH---HHHHH
Confidence 11 22332 344443 2233578888877 44444
No 118
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.54 E-value=5.1e-14 Score=160.17 Aligned_cols=163 Identities=22% Similarity=0.327 Sum_probs=115.0
Q ss_pred ccccChHHHHHHHHHHHHhhhcCC---CCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGL---SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~---~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 503 (938)
++|+|++.+++.+.+.+....... ....++..++||+||||||||++|+++|..+ +.+|+.++++++...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~---- 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL---- 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC----
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH----
Confidence 568899999988888876533100 0001112359999999999999999999988 789999998877542
Q ss_pred hhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCCceee
Q psy14500 504 RLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRTIN 567 (938)
Q Consensus 504 ~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~ 567 (938)
+.|... .+.++.......++||||||+|.+.+ ..++.|+..|+.-. .
T Consensus 89 --------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~---------~ 151 (476)
T 2ce7_A 89 --------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD---------S 151 (476)
T ss_dssp --------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC---------G
T ss_pred --------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC---------C
Confidence 223221 23344445556679999999998754 36788888887310 2
Q ss_pred cCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 568 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 568 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
..++++|+|||.+. .+++.++. ||+..+.+++++.++..+|+...+
T Consensus 152 ~~~viVIaaTn~~~------------------------~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 152 KEGIIVMAATNRPD------------------------ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp GGTEEEEEEESCGG------------------------GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred CCCEEEEEecCChh------------------------hhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 34678999999742 25566664 999999999999999998865444
No 119
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.53 E-value=3.5e-14 Score=159.18 Aligned_cols=201 Identities=19% Similarity=0.277 Sum_probs=124.2
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh-----
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH----- 500 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~----- 500 (938)
.+.++|++.+++.+.........+. .+..++||+||||||||++|+++|+.+. ...+++.+++..+....
T Consensus 43 ~~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~ 117 (368)
T 3uk6_A 43 SQGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSEIFSLEMSKTE 117 (368)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGGGSCSSSCHHH
T ss_pred hhhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchhhhhcccchhH
Confidence 3578999999888766665554331 2234799999999999999999999984 33578888776533221
Q ss_pred hhh----hhc----------------------------CCCCCCcccccc---chhHHHH----HhCC----CEEEEEcc
Q psy14500 501 SIS----RLI----------------------------GAPPGYIGYEEG---GYLTEIV----RRKP----YSLILLDE 537 (938)
Q Consensus 501 ~~~----~l~----------------------------g~~~~~~g~~~~---~~l~~~~----~~~~----~~vl~lDE 537 (938)
... ..+ +...++.|.... ..+.... .... ++||||||
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDE 197 (368)
T 3uk6_A 118 ALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDE 197 (368)
T ss_dssp HHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEES
T ss_pred HHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhh
Confidence 000 000 000111111110 1111111 1111 47999999
Q ss_pred ccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCe
Q psy14500 538 IEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD 617 (938)
Q Consensus 538 id~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~ 617 (938)
++.+++..++.|++.+++.. .. +++++++.+...+...... ....+++++++||.
T Consensus 198 i~~l~~~~~~~L~~~le~~~-----------~~-~~ii~t~~~~~~i~~t~~~------------~~~~l~~~l~sR~~- 252 (368)
T 3uk6_A 198 VHMLDIESFSFLNRALESDM-----------AP-VLIMATNRGITRIRGTSYQ------------SPHGIPIDLLDRLL- 252 (368)
T ss_dssp GGGSBHHHHHHHHHHTTCTT-----------CC-EEEEEESCSEEECBTSSCE------------EETTCCHHHHTTEE-
T ss_pred ccccChHHHHHHHHHhhCcC-----------CC-eeeeecccceeeeeccCCC------------CcccCCHHHHhhcc-
Confidence 99999999999999998621 22 3444554322111000000 01247789999995
Q ss_pred EEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 618 IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 618 ~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
++.|+|++.+++.+++...+.. .+ +.++++++++|++..
T Consensus 253 ~i~~~~~~~~e~~~il~~~~~~-------~~--~~~~~~~l~~l~~~~ 291 (368)
T 3uk6_A 253 IVSTTPYSEKDTKQILRIRCEE-------ED--VEMSEDAYTVLTRIG 291 (368)
T ss_dssp EEEECCCCHHHHHHHHHHHHHH-------TT--CCBCHHHHHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHh
Confidence 6899999999999997765543 33 568999999999854
No 120
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.53 E-value=3.1e-14 Score=169.37 Aligned_cols=208 Identities=15% Similarity=0.186 Sum_probs=134.9
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc---------
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI--------- 497 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~--------- 497 (938)
+.++||+.+++.+...+.... +++|+||||||||++|++||..+.......+.+.+....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~-----------~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR-----------HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC-----------CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred ceEECchhhHhhccccccCCC-----------EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 568899999999999887443 699999999999999999999885443233333221111
Q ss_pred -----------------------------------------------------chhhhhhhcCCCC-------CCccccc
Q psy14500 498 -----------------------------------------------------EKHSISRLIGAPP-------GYIGYEE 517 (938)
Q Consensus 498 -----------------------------------------------------~~~~~~~l~g~~~-------~~~g~~~ 517 (938)
.......++|... +..+...
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence 0011223333210 0000001
Q ss_pred cchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCC----------ceeecCCeEEEEecCCCchhhhhh
Q psy14500 518 GGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRG----------RTINFRNTIIVMTSNLGSDKIKEM 587 (938)
Q Consensus 518 ~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g----------~~~~~~~~iiI~ttn~~~~~~~~~ 587 (938)
.......+..+.+++|||||++.+++.+|+.|+++|+++.+...++ ......++.+|+|||..
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~------- 262 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD------- 262 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH-------
T ss_pred ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH-------
Confidence 1112234566778999999999999999999999999998875432 12224578899999952
Q ss_pred hcchHHHHHHHHHHHHhhccChHHhhcCC---eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhh
Q psy14500 588 EKGDKEIIKLAVMNEVKIYFRPEFINRID---DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 664 (938)
Q Consensus 588 ~~~~~~~~~~~~~~~l~~~~~~~l~~R~~---~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 664 (938)
+...|+++|++||+ ..++|++..++ ....+..++..+.+.+...+....++++++..|.+.
T Consensus 263 ---------------~~~~l~~~l~~R~~v~~i~i~l~~~~~~-~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~ 326 (604)
T 3k1j_A 263 ---------------TVDKMHPALRSRIRGYGYEVYMRTTMPD-TIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVRE 326 (604)
T ss_dssp ---------------HHHHSCHHHHHHHHHHSEEEECCSEEEC-CHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHH
T ss_pred ---------------HHhhcCHHHHHHhhccceEeeccccccC-CHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHH
Confidence 12358999999996 46777654332 233334444555555554444468999999999986
Q ss_pred cccc
Q psy14500 665 GFDL 668 (938)
Q Consensus 665 ~~~~ 668 (938)
.+.+
T Consensus 327 ~~r~ 330 (604)
T 3k1j_A 327 AQKR 330 (604)
T ss_dssp HHHT
T ss_pred Hhhh
Confidence 5433
No 121
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=99.53 E-value=2.6e-14 Score=152.26 Aligned_cols=117 Identities=21% Similarity=0.318 Sum_probs=92.4
Q ss_pred cccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccc
Q psy14500 669 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININ 744 (938)
Q Consensus 669 ~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~ 744 (938)
.+.+|||||++.+|.++++..++.+..+.++|+||++|||+.+++|+.+++.+ ++++++|+||||.++++...+..
T Consensus 62 i~viGDIHG~~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~ygf~ 141 (315)
T 3h63_A 62 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFE 141 (315)
T ss_dssp EEEECCCTTCHHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHH
T ss_pred EEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCccCCCcChHHHHHHHHHhhhhcCCcEEEEecCccccccccccccc
Confidence 47799999999999999999998666667999999999999999999999987 46789999999999887654321
Q ss_pred cCCccccHHHhhCCCCHHHHHHHHhcCCceEE-eCCEEEEeccc-CcC
Q psy14500 745 KKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-YKKYLMIHAGV-AKQ 790 (938)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~-~~~~~~vHAg~-~p~ 790 (938)
. ...........+.+.+|+..||++.. .+++++||||+ +|.
T Consensus 142 ~-----e~~~k~~~~l~~~~~~~f~~LPla~ii~~~il~vHGGl~sp~ 184 (315)
T 3h63_A 142 G-----EVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSED 184 (315)
T ss_dssp H-----HHHHHSCHHHHHHHHHHHTTSCSEEEETTTEEECSSCCCSST
T ss_pred H-----HHHHHhhhHHHHHHHHHHhcCCcEEEEcCCEEEeCCCCCCcc
Confidence 1 11111111224667899999999966 45899999999 453
No 122
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.53 E-value=1e-13 Score=156.58 Aligned_cols=215 Identities=12% Similarity=0.112 Sum_probs=148.4
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHhc----CCCC--CcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQR----RSKN--NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~----~~~~--~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~ 93 (938)
.|..+|+| ++++|++++++.+..++.. ..+. +++|+||||||||++++++++.+.... +..++.+
T Consensus 9 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i 79 (389)
T 1fnn_A 9 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYI 79 (389)
T ss_dssp GGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEE
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEE
Confidence 45666766 7899999999999888765 3334 799999999999999999999884321 3466777
Q ss_pred ehhhhhcC------------c--cccc-hHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC
Q psy14500 94 DIALLLAG------------T--KYRG-EFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR 158 (938)
Q Consensus 94 ~~~~l~~~------------~--~~~g-~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~ 158 (938)
++...... . ...+ .....+..+...+...+++.||||||++.+ +.+....|...++.
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l--------~~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 80 NGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL--------APDILSTFIRLGQE 151 (389)
T ss_dssp ETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS--------CHHHHHHHHHHTTC
T ss_pred eCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc--------chHHHHHHHHHHHh
Confidence 75432110 0 0011 122223333333334456889999999998 23556666666643
Q ss_pred ------CceEEEEecChhHHHHhhhcCHHHHcccc--eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhh
Q psy14500 159 ------GELHCIGATTLNEYRQYIEKDAAFERRFQ--KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELS 230 (938)
Q Consensus 159 ------~~i~vI~~tn~~~~~~~~~ld~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s 230 (938)
..+.+|++|+..++.. .+++.+.+||. .+.|++++.++...+++..+.... ....++++++..++..+
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADIT 227 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHH--TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHH
T ss_pred CCCCCcCCEEEEEEECCchHHH--HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHH
Confidence 5789999988775332 57899999997 499999999999999987765421 23478999999999988
Q ss_pred hhccc---cCCCchhhhhHHHHHHHHHH
Q psy14500 231 YRYIS---DRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 231 ~~~~~---~~~~p~~a~~ll~~a~~~~~ 255 (938)
.+..+ ..+.|+.+..++..+...+.
T Consensus 228 ~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 228 GAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp SBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 43210 13345888999988776554
No 123
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.53 E-value=1.5e-13 Score=151.12 Aligned_cols=169 Identities=21% Similarity=0.338 Sum_probs=123.8
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC--CceEEeccccccchhhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 504 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 504 (938)
+.++||+.+++.+...+.... .+++||+||||||||++|+++++.+.... ..++.+++++........
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS---------MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR- 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC---------CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH-
T ss_pred HHhhCCHHHHHHHHHHHHcCC---------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH-
Confidence 568999999999999887543 12699999999999999999999874332 346666665432211110
Q ss_pred hcCCCCCCccccccchhHHHH-----HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCC
Q psy14500 505 LIGAPPGYIGYEEGGYLTEIV-----RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 579 (938)
Q Consensus 505 l~g~~~~~~g~~~~~~l~~~~-----~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 579 (938)
..+.... ....+.||+|||++.+++..++.|+..+++ ...++++|++||.
T Consensus 95 --------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 95 --------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCNY 149 (327)
T ss_dssp --------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH-----------TTTTEEEEEEESC
T ss_pred --------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh-----------cCCCCeEEEEeCC
Confidence 0111111 124578999999999999999999999986 2356778888886
Q ss_pred CchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHH
Q psy14500 580 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 659 (938)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 659 (938)
.. .+.+.+.+||. .+.|+|++.+++.+++...+ ...+ +.+++++++
T Consensus 150 ~~------------------------~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~-------~~~~--~~~~~~~~~ 195 (327)
T 1iqp_A 150 SS------------------------KIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIA-------ENEG--LELTEEGLQ 195 (327)
T ss_dssp GG------------------------GSCHHHHHTEE-EEECCCCCHHHHHHHHHHHH-------HTTT--CEECHHHHH
T ss_pred cc------------------------ccCHHHHhhCc-EEEecCCCHHHHHHHHHHHH-------HhcC--CCCCHHHHH
Confidence 32 36788999995 89999999999988855443 3345 568999999
Q ss_pred HHHhh
Q psy14500 660 KISNI 664 (938)
Q Consensus 660 ~L~~~ 664 (938)
+|+..
T Consensus 196 ~l~~~ 200 (327)
T 1iqp_A 196 AILYI 200 (327)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.52 E-value=1.8e-13 Score=141.34 Aligned_cols=168 Identities=21% Similarity=0.339 Sum_probs=122.0
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISR 504 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~ 504 (938)
..++|++.+++.+...+.... .++++|+||||||||++|+++++.+... ...++.++++.........
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 86 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN---------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR- 86 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC---------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH-
T ss_pred HHHcCcHHHHHHHHHHHhCCC---------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH-
Confidence 468899999999999887432 1259999999999999999999987432 2356666665433221111
Q ss_pred hcCCCCCCccccccchhHHHHH-----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCC
Q psy14500 505 LIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 579 (938)
Q Consensus 505 l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 579 (938)
..+..... ...+.+|+|||++.+++..++.|+.++++ ...++++|++||.
T Consensus 87 --------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~-----------~~~~~~~i~~~~~ 141 (226)
T 2chg_A 87 --------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-----------YSKSCRFILSCNY 141 (226)
T ss_dssp --------------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHH-----------TTTTEEEEEEESC
T ss_pred --------------HHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHh-----------cCCCCeEEEEeCC
Confidence 01111111 24568999999999999999999999985 2346778888885
Q ss_pred CchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHH
Q psy14500 580 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 659 (938)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 659 (938)
.. .+.+.+.+|+. .+.|+|++.+++.+++...+.. .+ +.+++++++
T Consensus 142 ~~------------------------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~~~ 187 (226)
T 2chg_A 142 VS------------------------RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEK-------EG--VKITEDGLE 187 (226)
T ss_dssp GG------------------------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-------HT--CCBCHHHHH
T ss_pred hh------------------------hcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHH
Confidence 32 36788999996 9999999999998886654432 23 448899999
Q ss_pred HHHh
Q psy14500 660 KISN 663 (938)
Q Consensus 660 ~L~~ 663 (938)
.|+.
T Consensus 188 ~l~~ 191 (226)
T 2chg_A 188 ALIY 191 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8876
No 125
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.52 E-value=2e-13 Score=153.82 Aligned_cols=218 Identities=18% Similarity=0.238 Sum_probs=147.8
Q ss_pred hHHHHHhcCCCCCccccHHHHHHHHHHHh----cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 20 DLTEKARLGKLDPVIGRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~~~~~l~~~l~----~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
.+...+.| ++++|++++++.+...+. .....+++|+||||||||++++++++.+...... +..++.+++
T Consensus 12 ~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~----~~~~~~i~~ 84 (386)
T 2qby_A 12 YLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG----KFKHVYINT 84 (386)
T ss_dssp GGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS----SCEEEEEEH
T ss_pred hCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CceEEEEEC
Confidence 34444444 789999999999999876 3556789999999999999999999987432100 346777776
Q ss_pred hhhhcC--------------ccccch-HHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhc---c
Q psy14500 96 ALLLAG--------------TKYRGE-FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL---S 157 (938)
Q Consensus 96 ~~l~~~--------------~~~~g~-~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l---~ 157 (938)
...... ....+. ....+..++..+...+.+.||+|||++.+.... ..+....|...+ .
T Consensus 85 ~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~----~~~~l~~l~~~~~~~~ 160 (386)
T 2qby_A 85 RQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY----NDDILYKLSRINSEVN 160 (386)
T ss_dssp HHHCSHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS----CSTHHHHHHHHHHSCC
T ss_pred CCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC----cCHHHHHHhhchhhcC
Confidence 432100 000111 233344555555544558999999999996532 124444555555 4
Q ss_pred CCceEEEEecChhHHHHhhhcCHHHHcccc--eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccc
Q psy14500 158 RGELHCIGATTLNEYRQYIEKDAAFERRFQ--KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 235 (938)
Q Consensus 158 ~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~--~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~ 235 (938)
..++.+|++|+..++. ..+++.+.+||. .+.|++++.++...+++..+... .....++++++..++..+..
T Consensus 161 ~~~~~~I~~~~~~~~~--~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~--- 233 (386)
T 2qby_A 161 KSKISFIGITNDVKFV--DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAAR--- 233 (386)
T ss_dssp C--EEEEEEESCGGGG--GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHH---
T ss_pred CCeEEEEEEECCCChH--hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHH---
Confidence 5678999999877532 256888999994 59999999999999998766531 12457899999999998871
Q ss_pred cCCCchhhhhHHHHHHHHHH
Q psy14500 236 DRFMPDKAIDLIDEAAAKIK 255 (938)
Q Consensus 236 ~~~~p~~a~~ll~~a~~~~~ 255 (938)
..+.|+.+..+++.++....
T Consensus 234 ~~G~~r~~~~ll~~a~~~a~ 253 (386)
T 2qby_A 234 EHGDARRALDLLRVSGEIAE 253 (386)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHHHH
Confidence 11334888888888765544
No 126
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.52 E-value=3.4e-14 Score=153.98 Aligned_cols=196 Identities=16% Similarity=0.198 Sum_probs=127.2
Q ss_pred CCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc--------
Q psy14500 31 DPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------- 100 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~-------- 100 (938)
++++|++..++.+...+.. ....+|||+||||||||++|+++++..... +.+++.++++.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-------~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS-------DRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS-------SSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc-------CCCeEEEeCCCCChHHHHHHhc
Confidence 4689999999998887764 567899999999999999999999976433 44566777654321
Q ss_pred C---ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceEEE
Q psy14500 101 G---TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCI 164 (938)
Q Consensus 101 ~---~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~vI 164 (938)
+ +.+.|... .....|..+. +.+|||||++.+. .+.+..|+..++.+ .+++|
T Consensus 75 g~~~g~~tg~~~-~~~g~~~~a~----~g~L~LDEi~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI 141 (304)
T 1ojl_A 75 GHEKGAFTGADK-RREGRFVEAD----GGTLFLDEIGDIS--------PLMQVRLLRAIQEREVQRVGSNQTISVDVRLI 141 (304)
T ss_dssp CCCSSCCC---C-CCCCHHHHHT----TSEEEEESCTTCC--------HHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEE
T ss_pred CccccccCchhh-hhcCHHHhcC----CCEEEEeccccCC--------HHHHHHHHHHHhcCEeeecCCcccccCCeEEE
Confidence 0 01111111 1123333332 3489999999993 35667777777654 38899
Q ss_pred EecChhHHHH--hhhcCHHHHcccceEEeeCCC----HHHHHHHHHhhhhhhhccc---CCCCCHHHHHHHHHhh-hhcc
Q psy14500 165 GATTLNEYRQ--YIEKDAAFERRFQKILVEEPD----IEETISILRGLQKKYEVHH---GVEITDPAIVAASELS-YRYI 234 (938)
Q Consensus 165 ~~tn~~~~~~--~~~ld~al~~Rf~~i~~~~p~----~~e~~~il~~~~~~~~~~~---~~~i~~~~l~~~~~~s-~~~~ 234 (938)
++||.+.... .-.+.+.|.+||..+.+..|+ .++...++++++.++.... ...++++++..+...+ .+-+
T Consensus 142 ~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnv 221 (304)
T 1ojl_A 142 AATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNI 221 (304)
T ss_dssp EEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHH
T ss_pred EecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCH
Confidence 9999863211 123678999999765555554 3555667777776654433 3578999998887764 3322
Q ss_pred ccCCCchhhhhHHHHHHH
Q psy14500 235 SDRFMPDKAIDLIDEAAA 252 (938)
Q Consensus 235 ~~~~~p~~a~~ll~~a~~ 252 (938)
+....+++.++.
T Consensus 222 ------ReL~~~l~~~~~ 233 (304)
T 1ojl_A 222 ------RELENAIERAVV 233 (304)
T ss_dssp ------HHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHH
Confidence 445555555544
No 127
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.51 E-value=1.2e-13 Score=157.48 Aligned_cols=206 Identities=17% Similarity=0.228 Sum_probs=134.5
Q ss_pred CCCCcc-ccH--HHHHHHHHHHhcCC-CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccc
Q psy14500 29 KLDPVI-GRD--DEIRRAIQVLQRRS-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKY 104 (938)
Q Consensus 29 ~~~~lv-G~~--~~~~~l~~~l~~~~-~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~ 104 (938)
+|+.+| |+. .....+..+...+. .++++|+||||||||+|++++++.+.... | +..++.+++..+.. .+
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~-~----~~~v~~v~~~~~~~--~~ 175 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-P----DLRVMYITSEKFLN--DL 175 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHC-C----SSCEEEEEHHHHHH--HH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhC-C----CCeEEEeeHHHHHH--HH
Confidence 788888 643 34444555544433 57899999999999999999999874321 1 45677788765531 11
Q ss_pred cchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHHHHc
Q psy14500 105 RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFER 184 (938)
Q Consensus 105 ~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al~~ 184 (938)
.+.........|..... ..+.||||||++.+..... ....+...+....+.+..++|++.+++. ....+++++.+
T Consensus 176 ~~~~~~~~~~~~~~~~~-~~~~vL~IDEi~~l~~~~~--~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~~L~s 250 (440)
T 2z4s_A 176 VDSMKEGKLNEFREKYR-KKVDILLIDDVQFLIGKTG--VQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRLVS 250 (440)
T ss_dssp HHHHHTTCHHHHHHHHT-TTCSEEEEECGGGGSSCHH--HHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCHHHHH
T ss_pred HHHHHcccHHHHHHHhc-CCCCEEEEeCcccccCChH--HHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHHHHHh
Confidence 11111110112222221 1466999999999864210 0112233333334566666665555443 12237899999
Q ss_pred ccc---eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHHHHH
Q psy14500 185 RFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKI 256 (938)
Q Consensus 185 Rf~---~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~ 256 (938)
||. .+.+++|+.+++..|++..+.. .++.++++++..++..+.+.+ +.+..+++.+......
T Consensus 251 R~~~g~~i~l~~p~~e~r~~iL~~~~~~----~~~~i~~e~l~~la~~~~gn~------R~l~~~L~~~~~~a~~ 315 (440)
T 2z4s_A 251 RFQMGLVAKLEPPDEETRKSIARKMLEI----EHGELPEEVLNFVAENVDDNL------RRLRGAIIKLLVYKET 315 (440)
T ss_dssp HHHSSBCCBCCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHHHHCCSCH------HHHHHHHHHHHHHHHH
T ss_pred hccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH------HHHHHHHHHHHHHHHH
Confidence 995 5999999999999999887764 467899999999999887766 8888888888766543
No 128
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.51 E-value=1.1e-13 Score=151.63 Aligned_cols=167 Identities=21% Similarity=0.326 Sum_probs=122.3
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC--CceEEeccccccchhhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 504 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 504 (938)
+.++|++.+++.+...+.... .+++||+||||||||++|+++++.+++.. .+++.+++++....
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~----- 82 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN---------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGI----- 82 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC---------CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTCT-----
T ss_pred HHHhCCHHHHHHHHHHHhCCC---------CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccCh-----
Confidence 458899999998887765321 12599999999999999999999885432 34666666543211
Q ss_pred hcCCCCCCccccccc-hhHHHH-----HhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecC
Q psy14500 505 LIGAPPGYIGYEEGG-YLTEIV-----RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 578 (938)
Q Consensus 505 l~g~~~~~~g~~~~~-~l~~~~-----~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 578 (938)
+..+ .+.... ....+.||+|||+|.+++..++.|++++++ ...++++|++||
T Consensus 83 -----------~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~i~~~~ 140 (319)
T 2chq_A 83 -----------DVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-----------YSKSCRFILSCN 140 (319)
T ss_dssp -----------TTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-----------SSSSEEEEEEES
T ss_pred -----------HHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-----------cCCCCeEEEEeC
Confidence 1111 111221 124468999999999999999999999986 345678888888
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHH
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 658 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 658 (938)
... .+.+++.+||. ++.|.|++.+++.+++...+ ...+ +.++++++
T Consensus 141 ~~~------------------------~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~-------~~~~--~~i~~~~l 186 (319)
T 2chq_A 141 YVS------------------------RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEIC-------EKEG--VKITEDGL 186 (319)
T ss_dssp CGG------------------------GSCHHHHTTCE-EEECCCCCHHHHHHHHHHHH-------HTTC--CCBCHHHH
T ss_pred Chh------------------------hcchHHHhhCe-EEEecCCCHHHHHHHHHHHH-------HHcC--CCCCHHHH
Confidence 532 46789999995 99999999999988865443 3345 56899999
Q ss_pred HHHHh
Q psy14500 659 KKISN 663 (938)
Q Consensus 659 ~~L~~ 663 (938)
+.|+.
T Consensus 187 ~~l~~ 191 (319)
T 2chq_A 187 EALIY 191 (319)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 129
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.51 E-value=1.2e-13 Score=148.83 Aligned_cols=166 Identities=23% Similarity=0.346 Sum_probs=115.2
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCC----CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLS----DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 502 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~----~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 502 (938)
+.++|++.+++.+...+........ ....+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~--- 90 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK--- 90 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh---
Confidence 4678999999888887754311000 001123379999999999999999999998 778999888776532
Q ss_pred hhhcCCCCCCccccc--cchhHHHHHhCCCEEEEEcccccc-----------CHHHHHHHHHhhcCCceecCCCceeecC
Q psy14500 503 SRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRTINFR 569 (938)
Q Consensus 503 ~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 569 (938)
+.|... ...+........++||||||+|.+ ....+..|+.+++...-. ....
T Consensus 91 ---------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~------~~~~ 155 (285)
T 3h4m_A 91 ---------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGF------DARG 155 (285)
T ss_dssp ---------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTT------CSSS
T ss_pred ---------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCC------CCCC
Confidence 222221 123344455666799999999987 556677777766531100 0224
Q ss_pred CeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 570 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 570 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
++++|+|||... .+++.+++ ||+.++.|++++.++..+|+...+
T Consensus 156 ~~~vI~ttn~~~------------------------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~ 201 (285)
T 3h4m_A 156 DVKIIGATNRPD------------------------ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHT 201 (285)
T ss_dssp SEEEEEECSCGG------------------------GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCch------------------------hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHH
Confidence 678899998632 36778887 998899999999999999976543
No 130
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.50 E-value=6.6e-14 Score=160.76 Aligned_cols=163 Identities=17% Similarity=0.288 Sum_probs=118.6
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCC----CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLS----DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 502 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~----~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 502 (938)
..++|++.+++.+...+........ ....+..++||+||||||||++|++||+.+ +.+|+.++|+++...
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~~~--- 277 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMSK--- 277 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHHTS---
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhhhh---
Confidence 5689999999999988865310000 001223479999999999999999999988 789999999876542
Q ss_pred hhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccCH-----------HHHHHHHHhhcCCceecCCCceeecC
Q psy14500 503 SRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFR 569 (938)
Q Consensus 503 ~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~ 569 (938)
+.|.... +.++.......++||||||||.+.+ .+++.|+..|+... ...
T Consensus 278 ---------~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~---------~~~ 339 (489)
T 3hu3_A 278 ---------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK---------QRA 339 (489)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC---------TTS
T ss_pred ---------hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc---------cCC
Confidence 2332222 2233444556679999999976654 78999999998421 235
Q ss_pred CeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 570 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 570 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
++++|+|||.+. .+.+.+.+ ||+..+.|++++.++..+|+...+
T Consensus 340 ~v~vIaaTn~~~------------------------~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 340 HVIVMAATNRPN------------------------SIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp CEEEEEEESCGG------------------------GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred ceEEEEecCCcc------------------------ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 688999999743 25677776 999999999999999999976543
No 131
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.50 E-value=2e-13 Score=150.42 Aligned_cols=182 Identities=16% Similarity=0.198 Sum_probs=132.1
Q ss_pred cHHHHHHHHHHHhcCCCCC-cEEEcCCCChHHHHHHHHHHHHHcCCCCCC---c-----------CCCeEEEEehhhhhc
Q psy14500 36 RDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS---L-----------LSKKILLLDIALLLA 100 (938)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~-vLL~Gp~GtGKT~la~~la~~l~~~~~p~~---~-----------~~~~~~~~~~~~l~~ 100 (938)
+++.++.+...+..+..+| +||+||||+|||++|+++|+.+.+...... . ....++.++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~--- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK--- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---
Confidence 5677888888888777666 899999999999999999999865321100 0 002344444321
Q ss_pred CccccchHHHHHHHHHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--ceEEEEecChhHHHHh
Q psy14500 101 GTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQY 175 (938)
Q Consensus 101 ~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~i~vI~~tn~~~~~~~ 175 (938)
+++..+ ...++.+++.+... ++..|+||||+|.|. .+.++.|+..++.. .+++|.+|+.++
T Consensus 84 ~~~~~~--i~~ir~l~~~~~~~~~~~~~kvviIdead~l~--------~~a~naLLk~lEep~~~~~~Il~t~~~~---- 149 (334)
T 1a5t_A 84 GKNTLG--VDAVREVTEKLNEHARLGGAKVVWVTDAALLT--------DAAANALLKTLEEPPAETWFFLATREPE---- 149 (334)
T ss_dssp TCSSBC--HHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC--------HHHHHHHHHHHTSCCTTEEEEEEESCGG----
T ss_pred cCCCCC--HHHHHHHHHHHhhccccCCcEEEEECchhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH----
Confidence 011111 22466677666522 346799999999994 35678899999864 588888888876
Q ss_pred hhcCHHHHcccceEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHH
Q psy14500 176 IEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 250 (938)
Q Consensus 176 ~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 250 (938)
.+.+++++||..+.|++|+.++...+++... .++++++..++..+++.. +.+..+++..
T Consensus 150 -~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G~~------r~a~~~l~~~ 208 (334)
T 1a5t_A 150 -RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAGSP------GAALALFQGD 208 (334)
T ss_dssp -GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTCH------HHHHHTTSSH
T ss_pred -hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCCCH------HHHHHHhccc
Confidence 8999999999999999999999998887542 578899999999988876 7777776654
No 132
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.50 E-value=7.4e-14 Score=155.55 Aligned_cols=184 Identities=18% Similarity=0.265 Sum_probs=124.3
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc---CCCceEEeccccccchhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN---NEESIIRIDMSEFIEKHSIS 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~---~~~~~~~~~~~~~~~~~~~~ 503 (938)
+.++|++++++.+...+.... .++++|+||||||||++|+++++.+.. ....+..+++++......+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN---------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR 107 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT---------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT
T ss_pred HHhhCCHHHHHHHHHHHhcCC---------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH
Confidence 568999999999888876432 125999999999999999999998742 23467777776543221111
Q ss_pred hhcCC-CCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCch
Q psy14500 504 RLIGA-PPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 582 (938)
Q Consensus 504 ~l~g~-~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~ 582 (938)
..+.. ....... .............+.||||||++.+++..++.|++.+++. ..++.+|++||...
T Consensus 108 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~~-----------~~~~~~il~~~~~~- 174 (353)
T 1sxj_D 108 EKVKNFARLTVSK-PSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMETY-----------SGVTRFCLICNYVT- 174 (353)
T ss_dssp THHHHHHHSCCCC-CCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHHT-----------TTTEEEEEEESCGG-
T ss_pred HHHHHHhhhcccc-cchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHhc-----------CCCceEEEEeCchh-
Confidence 10000 0000000 0000000111234679999999999999999999999962 34567788887532
Q ss_pred hhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHH
Q psy14500 583 KIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 662 (938)
Q Consensus 583 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 662 (938)
.+.+.+.+|+. .+.|.|++.+++..++...+ ...+ +.++++++++|+
T Consensus 175 -----------------------~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~-------~~~~--~~i~~~~l~~l~ 221 (353)
T 1sxj_D 175 -----------------------RIIDPLASQCS-KFRFKALDASNAIDRLRFIS-------EQEN--VKCDDGVLERIL 221 (353)
T ss_dssp -----------------------GSCHHHHHHSE-EEECCCCCHHHHHHHHHHHH-------HTTT--CCCCHHHHHHHH
T ss_pred -----------------------hCcchhhccCc-eEEeCCCCHHHHHHHHHHHH-------HHhC--CCCCHHHHHHHH
Confidence 36788999995 89999999999998865544 3344 568999999999
Q ss_pred hhc
Q psy14500 663 NIG 665 (938)
Q Consensus 663 ~~~ 665 (938)
+..
T Consensus 222 ~~~ 224 (353)
T 1sxj_D 222 DIS 224 (353)
T ss_dssp HHT
T ss_pred HHc
Confidence 844
No 133
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.50 E-value=2e-13 Score=152.73 Aligned_cols=99 Identities=18% Similarity=0.303 Sum_probs=72.3
Q ss_pred EEEEeCccccccCCCCCC-c---cchhhhhhhhccC------------CceEEEEec-----ChhHHHHhhhcCHHHHcc
Q psy14500 127 IIFIDELHTMIGTGKVEG-S---IDAGNMLKPELSR------------GELHCIGAT-----TLNEYRQYIEKDAAFERR 185 (938)
Q Consensus 127 iL~iDEid~l~~~~~~~~-~---~~~~~~L~~~l~~------------~~i~vI~~t-----n~~~~~~~~~ld~al~~R 185 (938)
||++||+|++.....+.+ + ..+++.|+++++. .++.+|+++ ++. .+.|.|.+|
T Consensus 253 il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~------dlipel~~R 326 (444)
T 1g41_A 253 IVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPS------DLIPELQGR 326 (444)
T ss_dssp EEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGG------GSCHHHHTT
T ss_pred eeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChh------hcchHHhcc
Confidence 899999999987543211 1 1256788888864 357789887 444 356899999
Q ss_pred cce-EEeeCCCHHHHHHHHH----hhhhhhhc-----ccCCCCCHHHHHHHHHhhh
Q psy14500 186 FQK-ILVEEPDIEETISILR----GLQKKYEV-----HHGVEITDPAIVAASELSY 231 (938)
Q Consensus 186 f~~-i~~~~p~~~e~~~il~----~~~~~~~~-----~~~~~i~~~~l~~~~~~s~ 231 (938)
|+. |.|+.++.++...|+. .+..++.. ...+.++++++..++..+.
T Consensus 327 ~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~ 382 (444)
T 1g41_A 327 LPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAF 382 (444)
T ss_dssp CCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHH
T ss_pred cceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHH
Confidence 997 8999999999999993 33333322 2235789999999998764
No 134
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.49 E-value=1.4e-13 Score=159.58 Aligned_cols=117 Identities=21% Similarity=0.326 Sum_probs=93.2
Q ss_pred cccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhc----CCccEEEcCCChHHHHHHHhccc
Q psy14500 669 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININ 744 (938)
Q Consensus 669 ~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~ 744 (938)
.+.+|||||+++++.++++.+++.+..+.+||+||+||||+.+++|+++++.+ +.++++|+||||.+++....+..
T Consensus 215 ~~vigDiHG~~~~l~~~l~~~~~~~~~~~~v~lGD~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~~~~~~~~g~~ 294 (477)
T 1wao_1 215 ITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGFE 294 (477)
T ss_dssp EEEECBCTTCHHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSHH
T ss_pred eEEEeCCCCCHHHHHHHHHHcCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHhhCCCceEeecCCccHHHHhhhcChH
Confidence 57799999999999999999987655677999999999999999999999886 56789999999999887654321
Q ss_pred cCCccccHHHhhCCCCHHHHHHHHhcCCceEE-eCCEEEEeccc-CcC
Q psy14500 745 KKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-YKKYLMIHAGV-AKQ 790 (938)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~-~~~~~~vHAg~-~p~ 790 (938)
. +. ...........+.+|+..||+... .++++|||||+ +|.
T Consensus 295 ~----~~-~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vHgg~~~~~ 337 (477)
T 1wao_1 295 G----EV-KAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSED 337 (477)
T ss_dssp H----HH-HHHSCTTHHHHHHHHHTTSCSEEEETTTEEECSSCCCSSS
T ss_pred H----HH-HHHhhHHHHHHHHHHhccCCcEEEEcCcEEEECCCCCccc
Confidence 1 11 111222345778999999999975 55799999999 453
No 135
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.48 E-value=1.2e-13 Score=148.51 Aligned_cols=221 Identities=12% Similarity=0.009 Sum_probs=143.0
Q ss_pred ccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC-------CCceEEeccccccchhh
Q psy14500 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-------EESIIRIDMSEFIEKHS 501 (938)
Q Consensus 429 viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~-------~~~~~~~~~~~~~~~~~ 501 (938)
+.|.+.-+..+...+...-.+ .+.++++|+||||||||++++.+++.+... ...++.+||..+.+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~-----~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS-----SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred cCCHHHHHHHHHHHHHHHhcC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence 456666677777777654422 122479999999999999999999998421 34678899988776533
Q ss_pred h-----hhhcCCCCCCccccccchhHHHHH-----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCe
Q psy14500 502 I-----SRLIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 571 (938)
Q Consensus 502 ~-----~~l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 571 (938)
. ..+.|..... +. ....+...+. .....||+|||+|.+. .|+.|+.+++-.. ....+.
T Consensus 97 ~~~~I~~~L~g~~~~~-~~-~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~--------~~~s~~ 164 (318)
T 3te6_A 97 LYEKIWFAISKENLCG-DI-SLEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS--------SKNSKL 164 (318)
T ss_dssp HHHHHHHHHSCCC--C-CC-CHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH--------CSSCCE
T ss_pred HHHHHHHHhcCCCCCc-hH-HHHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc--------ccCCcE
Confidence 2 2343442211 11 1122333332 3446899999999998 5677777775210 123567
Q ss_pred EEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCC-eEEEccCCCHHHHHHHHHHHHHHHHHH-H-----
Q psy14500 572 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNK-L----- 644 (938)
Q Consensus 572 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~-~~i~f~~l~~e~~~~i~~~~l~~~~~~-~----- 644 (938)
++|+++|.-... ...+.+.+.+|+. .+|.|+|++.+++.+|+...+..+... +
T Consensus 165 ~vI~i~n~~d~~--------------------~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~ 224 (318)
T 3te6_A 165 SIICVGGHNVTI--------------------REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVND 224 (318)
T ss_dssp EEEEECCSSCCC--------------------HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECT
T ss_pred EEEEEecCcccc--------------------hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 788888853210 0113456778986 489999999999999999888765321 0
Q ss_pred ----------H----------ccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHHHh
Q psy14500 645 ----------L----------KMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKI 689 (938)
Q Consensus 645 ----------~----------~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~~~ 689 (938)
+ -..+.+.+++++++++++..- ..-||++..++.++++++..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA---~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 225 KKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVA---NVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp TCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHH---HHHCSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccCHHHHHHHHHHHH---hhCChHHHHHHHHHHHHHHH
Confidence 0 001235789999999998432 22589999999999888644
No 136
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.47 E-value=2.2e-13 Score=166.90 Aligned_cols=179 Identities=17% Similarity=0.285 Sum_probs=127.4
Q ss_pred CCccccHHHHHHHHHHHhcCC---------CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14500 31 DPVIGRDDEIRRAIQVLQRRS---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 101 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~~~~---------~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~ 101 (938)
+.++|++.+++.+...+.... .+++||+||||||||++|+++|+.+... +.+++.++++.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-------~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD-------EESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC-------TTCEEEEEGGGGCSS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CcceEEEechhcccc
Confidence 468999999988888776321 1269999999999999999999998543 567899999887643
Q ss_pred ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceEEEEecC
Q psy14500 102 TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATT 168 (938)
Q Consensus 102 ~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~vI~~tn 168 (938)
.... . ..+...+. ...+.||||||++.+ +.++++.|+++++.+ ++++|+|||
T Consensus 564 ~~~~---~---~~l~~~~~-~~~~~vl~lDEi~~~--------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 HSTS---G---GQLTEKVR-RKPYSVVLLDAIEKA--------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp CCCC---------CHHHHH-HCSSSEEEEECGGGS--------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred cccc---c---chhhHHHH-hCCCeEEEEeCcccc--------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 2211 1 11112222 234669999999988 347788899888754 468999999
Q ss_pred hhH-----HHH--hhhcCHHHHcccc-eEEeeCCCHHHHHHHHHhhhhhhhc-----ccCCCCCHHHHHHHHHhhh
Q psy14500 169 LNE-----YRQ--YIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEV-----HHGVEITDPAIVAASELSY 231 (938)
Q Consensus 169 ~~~-----~~~--~~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~-----~~~~~i~~~~l~~~~~~s~ 231 (938)
... ... .-.+.|+|.+||+ .|.|++|+.+++..|++.++..+.. ...+.+++++++.++..+.
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~ 704 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGV 704 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGC
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCC
Confidence 421 100 1137899999996 5999999999999999887765432 2346789999999987643
No 137
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.46 E-value=5.5e-13 Score=163.74 Aligned_cols=179 Identities=16% Similarity=0.235 Sum_probs=128.7
Q ss_pred CCccccHHHHHHHHHHHhc---------CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14500 31 DPVIGRDDEIRRAIQVLQR---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 101 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~~---------~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~ 101 (938)
+.++|++.+++.+...+.. .+..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEechhhcch
Confidence 4689999999888876653 122379999999999999999999998 678889998776432
Q ss_pred ---c-------cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC------------
Q psy14500 102 ---T-------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 159 (938)
Q Consensus 102 ---~-------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------ 159 (938)
+ .|.|..+. ..+...+. ...++||||||++.+. .++++.|+++++.+
T Consensus 528 ~~~~~l~g~~~g~~g~~~~--~~l~~~~~-~~~~~vl~lDEi~~~~--------~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFDQG--GLLTDAVI-KHPHAVLLLDEIEKAH--------PDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp SCCSSSCCCCSCSHHHHHT--THHHHHHH-HCSSEEEEEETGGGSC--------HHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred hhHhhhcCCCCCCcCcccc--chHHHHHH-hCCCcEEEEeCccccC--------HHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 0 13332111 11222333 3446899999999983 46888999998754
Q ss_pred -ceEEEEecChhHHH--------------------HhhhcCHHHHcccc-eEEeeCCCHHHHHHHHHhhhhhhhc-----
Q psy14500 160 -ELHCIGATTLNEYR--------------------QYIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEV----- 212 (938)
Q Consensus 160 -~i~vI~~tn~~~~~--------------------~~~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~----- 212 (938)
++++|+|||..... -.-.++|+|++||+ .|.|++|+.+++..|++.++.++..
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~ 676 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQK 676 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 35699999973200 00157899999996 4999999999999999888765422
Q ss_pred ccCCCCCHHHHHHHHHhh
Q psy14500 213 HHGVEITDPAIVAASELS 230 (938)
Q Consensus 213 ~~~~~i~~~~l~~~~~~s 230 (938)
...+.++++++..++..+
T Consensus 677 ~~~~~~~~~a~~~l~~~~ 694 (758)
T 1r6b_X 677 GVSLEVSQEARNWLAEKG 694 (758)
T ss_dssp TEEEEECHHHHHHHHHHH
T ss_pred CcEEEeCHHHHHHHHHhC
Confidence 113578999999988764
No 138
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.46 E-value=3.6e-14 Score=151.89 Aligned_cols=190 Identities=16% Similarity=0.273 Sum_probs=117.1
Q ss_pred hhccccChHHHHHHHHHH----HHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh
Q psy14500 425 LCKRVVGQDEAISAVSNA----IRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH 500 (938)
Q Consensus 425 l~~~viGq~~~~~~l~~~----l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~ 500 (938)
+...++|++.+++.+... ....... ...+..++||+||||||||++|+++|+.+ +.+++.+++++.
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~---- 100 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDK---- 100 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGG----
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHH----
Confidence 345678888887766663 2222111 12344589999999999999999999997 678888887641
Q ss_pred hhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEcccccc----------CHHHHHHHHHhhcCCceecCCCceeecCC
Q psy14500 501 SISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKA----------NSDVFNILLQILDDGRLTDNRGRTINFRN 570 (938)
Q Consensus 501 ~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 570 (938)
++|...+ ......+.+.......+.+||||||||.+ ...+++.|+..++... ....+
T Consensus 101 ----~~g~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~--------~~~~~ 167 (272)
T 1d2n_A 101 ----MIGFSET-AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP--------PQGRK 167 (272)
T ss_dssp ----CTTCCHH-HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC--------STTCE
T ss_pred ----hcCCchH-HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc--------CCCCC
Confidence 2221100 00000112223334466799999999987 4566677777665310 12245
Q ss_pred eEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccCh-HHhhcCCeEEEccCCCH-HHHHHHHHHHHHHHHHHHHccC
Q psy14500 571 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP-EFINRIDDIIVFRYLNR-KNILSIANIQLNILKNKLLKMN 648 (938)
Q Consensus 571 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~l~~R~~~~i~f~~l~~-e~~~~i~~~~l~~~~~~~~~~~ 648 (938)
+++|+|||.... +.+ .+.+||+..+.++|++. +++..++...
T Consensus 168 ~~ii~ttn~~~~------------------------l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~------------ 211 (272)
T 1d2n_A 168 LLIIGTTSRKDV------------------------LQEMEMLNAFSTTIHVPNIATGEQLLEALELL------------ 211 (272)
T ss_dssp EEEEEEESCHHH------------------------HHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH------------
T ss_pred EEEEEecCChhh------------------------cchhhhhcccceEEcCCCccHHHHHHHHHHhc------------
Confidence 678888886321 112 45688888999999987 6666664331
Q ss_pred CeEEEcHHHHHHHHhh--ccccccccccc
Q psy14500 649 MDLKISKAALKKISNI--GFDLIYGARDV 675 (938)
Q Consensus 649 ~~l~~~~~~~~~L~~~--~~~~~~~~~dl 675 (938)
..++++.+..+++. +|.|..+++.+
T Consensus 212 --~~~~~~~~~~l~~~~~g~~~~g~ir~l 238 (272)
T 1d2n_A 212 --GNFKDKERTTIAQQVKGKKVWIGIKKL 238 (272)
T ss_dssp --TCSCHHHHHHHHHHHTTSEEEECHHHH
T ss_pred --CCCCHHHHHHHHHHhcCCCccccHHHH
Confidence 12577788888763 34444444443
No 139
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=4.7e-13 Score=146.96 Aligned_cols=168 Identities=14% Similarity=0.217 Sum_probs=122.6
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISR 504 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~ 504 (938)
+.++|++.+++.+...+.... + ++++|+||||+|||++|+++++.+... ...++.+++++......+
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--------~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~i-- 89 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--------M-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGIDVV-- 89 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--------C-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHHHH--
T ss_pred HHHHCCHHHHHHHHHHHHcCC--------C-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChHHH--
Confidence 468899999999999887432 1 249999999999999999999987432 234666666542211111
Q ss_pred hcCCCCCCccccccchhHHHHH-------hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEec
Q psy14500 505 LIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 577 (938)
Q Consensus 505 l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 577 (938)
+.+...+. ...+.||+|||++.++...++.|++.+++ ...++++|++|
T Consensus 90 --------------~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~il~~ 144 (323)
T 1sxj_B 90 --------------RNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMEL-----------YSNSTRFAFAC 144 (323)
T ss_dssp --------------HTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH-----------TTTTEEEEEEE
T ss_pred --------------HHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhc-----------cCCCceEEEEe
Confidence 11111111 23368999999999999999999999986 33567788888
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHH
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 657 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 657 (938)
|.. ..+.+.+.+||. ++.|+|++.+++.+++...+.. .+ +.+++++
T Consensus 145 ~~~------------------------~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~ 190 (323)
T 1sxj_B 145 NQS------------------------NKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKL-------ED--VKYTNDG 190 (323)
T ss_dssp SCG------------------------GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHH-------HT--CCBCHHH
T ss_pred CCh------------------------hhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHH-------cC--CCCCHHH
Confidence 752 236788999995 9999999999999987665532 24 4588999
Q ss_pred HHHHHhh
Q psy14500 658 LKKISNI 664 (938)
Q Consensus 658 ~~~L~~~ 664 (938)
++.|+..
T Consensus 191 ~~~l~~~ 197 (323)
T 1sxj_B 191 LEAIIFT 197 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
No 140
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=7.4e-13 Score=146.46 Aligned_cols=170 Identities=22% Similarity=0.361 Sum_probs=121.1
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC--ceEEeccccccchhhhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSEFIEKHSISR 504 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~ 504 (938)
..++||+.+++.+...+..... ++++|+||||||||++|+++++.+++... .+..++.++......+.
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~~---------~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir- 94 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGKL---------PHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVR- 94 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTCC---------CCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHH-
T ss_pred HHhcCcHHHHHHHHHHHhcCCC---------ceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHH-
Confidence 4578999999999998875431 25999999999999999999999864332 24444443321111110
Q ss_pred hcCCCCCCccccccchhHHHHH-----hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCC
Q psy14500 505 LIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 579 (938)
Q Consensus 505 l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 579 (938)
..+..... ...+.|++|||+|.++...++.|++++++ +..++.+|++||.
T Consensus 95 --------------~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~il~~n~ 149 (340)
T 1sxj_C 95 --------------NQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIER-----------YTKNTRFCVLANY 149 (340)
T ss_dssp --------------THHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH-----------TTTTEEEEEEESC
T ss_pred --------------HHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhc-----------CCCCeEEEEEecC
Confidence 01111111 12368999999999999999999999996 3456778888885
Q ss_pred CchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHH
Q psy14500 580 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 659 (938)
Q Consensus 580 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 659 (938)
.. .+.+++.+||. .+.|.+++.+++.+++...+ ...+ +.++++++.
T Consensus 150 ~~------------------------~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~-------~~~~--~~i~~~~~~ 195 (340)
T 1sxj_C 150 AH------------------------KLTPALLSQCT-RFRFQPLPQEAIERRIANVL-------VHEK--LKLSPNAEK 195 (340)
T ss_dssp GG------------------------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHH-------HTTT--CCBCHHHHH
T ss_pred cc------------------------ccchhHHhhce-eEeccCCCHHHHHHHHHHHH-------HHcC--CCCCHHHHH
Confidence 32 46789999995 89999999999888865544 2334 568899999
Q ss_pred HHHhhc
Q psy14500 660 KISNIG 665 (938)
Q Consensus 660 ~L~~~~ 665 (938)
.++..+
T Consensus 196 ~i~~~s 201 (340)
T 1sxj_C 196 ALIELS 201 (340)
T ss_dssp HHHHHH
T ss_pred HHHHHc
Confidence 998743
No 141
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.44 E-value=1.3e-12 Score=143.86 Aligned_cols=178 Identities=11% Similarity=0.084 Sum_probs=117.1
Q ss_pred ccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEecccc---ccch--hh
Q psy14500 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSE---FIEK--HS 501 (938)
Q Consensus 429 viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~---~~~~--~~ 501 (938)
+-+|+++.+.+...++..+. .+.+||+||||+|||++|+++|+.++..... ..+..|.. +... ..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~--------~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRG--------HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCC--------CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred CCchHHHHHHHHHHHHcCCc--------ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 34677888888888875442 2369999999999999999999998543211 00001110 0000 00
Q ss_pred hhhhcCCC-CCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEe
Q psy14500 502 ISRLIGAP-PGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 576 (938)
Q Consensus 502 ~~~l~g~~-~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 576 (938)
+..+.+.. ....+.+..+.+...+.. +.+.|++|||+|.++.+.+|.|++.||+ +..+++||++
T Consensus 76 ~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe-----------p~~~~~~Il~ 144 (334)
T 1a5t_A 76 YYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE-----------PPAETWFFLA 144 (334)
T ss_dssp EEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS-----------CCTTEEEEEE
T ss_pred EEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC-----------CCCCeEEEEE
Confidence 00010100 011222222333334332 3468999999999999999999999997 4567888988
Q ss_pred cCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHH
Q psy14500 577 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 656 (938)
Q Consensus 577 tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 656 (938)
||.. ..+.+.+.+|| .++.|+|++.+++.+++.... .++++
T Consensus 145 t~~~------------------------~~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~--------------~~~~~ 185 (334)
T 1a5t_A 145 TREP------------------------ERLLATLRSRC-RLHYLAPPPEQYAVTWLSREV--------------TMSQD 185 (334)
T ss_dssp ESCG------------------------GGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC--------------CCCHH
T ss_pred eCCh------------------------HhCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc--------------CCCHH
Confidence 8853 24778999999 589999999999988865432 46788
Q ss_pred HHHHHHhh
Q psy14500 657 ALKKISNI 664 (938)
Q Consensus 657 ~~~~L~~~ 664 (938)
++..++..
T Consensus 186 ~~~~l~~~ 193 (334)
T 1a5t_A 186 ALLAALRL 193 (334)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88888764
No 142
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.44 E-value=2.3e-12 Score=144.64 Aligned_cols=184 Identities=20% Similarity=0.274 Sum_probs=122.6
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh---
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS--- 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~--- 503 (938)
+.++|++.+++.+...+...+. .+.++|+||+|||||++|+++++.+.... +.....|..........
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~--------~~~~ll~G~~G~GKT~la~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI--------HHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQGR 86 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC--------CSEEEEESCTTSSHHHHHHHHHHHHSCTT-CSCSSCCSSSHHHHHHHTSC
T ss_pred hhccCcHHHHHHHHHHHHhCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCCCC-CCCCCCCcccHHHHHHhccC
Confidence 4689999999999999875432 13689999999999999999999884322 11111111111100000
Q ss_pred --hhcCC-CCCCccccccchhHHHHHh----CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEe
Q psy14500 504 --RLIGA-PPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 576 (938)
Q Consensus 504 --~l~g~-~~~~~g~~~~~~l~~~~~~----~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 576 (938)
.++.. ..+..+.+..+.+...+.. ..+.||+|||++.++...++.|++.+++ ...++++|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-----------~~~~~~~Il~ 155 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFLLA 155 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-----------CCSSEEEEEE
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-----------CCCceEEEEE
Confidence 00000 0001112222233333332 2368999999999999999999999986 3456788888
Q ss_pred cCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHH
Q psy14500 577 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 656 (938)
Q Consensus 577 tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 656 (938)
|+... .+.+.+.+|+ ..+.|.|++.+++.+++...+.. .+ +.++++
T Consensus 156 ~~~~~------------------------~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~-------~~--~~~~~~ 201 (373)
T 1jr3_A 156 TTDPQ------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-------EH--IAHEPR 201 (373)
T ss_dssp ESCGG------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------HT--CCBCHH
T ss_pred eCChH------------------------hCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH-------cC--CCCCHH
Confidence 87422 3677899999 69999999999999987665533 24 567899
Q ss_pred HHHHHHhh
Q psy14500 657 ALKKISNI 664 (938)
Q Consensus 657 ~~~~L~~~ 664 (938)
+++.|+..
T Consensus 202 a~~~l~~~ 209 (373)
T 1jr3_A 202 ALQLLARA 209 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999874
No 143
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.43 E-value=5.2e-13 Score=146.69 Aligned_cols=171 Identities=15% Similarity=0.249 Sum_probs=116.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEcc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 537 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDE 537 (938)
.+++|+||||||||++|+++++.+...+.+++.+++.++....... +.. .....+..... ..++|||||
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-~~~--------~~~~~~~~~~~--~~~vL~iDE 106 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEH-LKK--------GTINEFRNMYK--SVDLLLLDD 106 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHH-HHH--------TCHHHHHHHHH--TCSEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH-HHc--------CcHHHHHHHhc--CCCEEEEcC
Confidence 4799999999999999999999986667789999987764321110 000 00111222222 357999999
Q ss_pred ccccCH--HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcC
Q psy14500 538 IEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI 615 (938)
Q Consensus 538 id~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~ 615 (938)
++.++. ..++.|+..++.. ...+..+|+|++.++..+ ..+.+.|.+|+
T Consensus 107 i~~l~~~~~~~~~l~~~l~~~----------~~~~~~iii~~~~~~~~l--------------------~~l~~~L~sR~ 156 (324)
T 1l8q_A 107 VQFLSGKERTQIEFFHIFNTL----------YLLEKQIILASDRHPQKL--------------------DGVSDRLVSRF 156 (324)
T ss_dssp GGGGTTCHHHHHHHHHHHHHH----------HHTTCEEEEEESSCGGGC--------------------TTSCHHHHHHH
T ss_pred cccccCChHHHHHHHHHHHHH----------HHCCCeEEEEecCChHHH--------------------HHhhhHhhhcc
Confidence 999886 7788888887631 112335666666555432 23788999999
Q ss_pred C--eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 616 D--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 616 ~--~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
. .++.|+| +.+++.+|+...+.. .+ +.++++++++|+... .++|.+.+. +++++
T Consensus 157 ~~~~~i~l~~-~~~e~~~il~~~~~~-------~~--~~l~~~~l~~l~~~~----g~~r~l~~~---l~~~~ 212 (324)
T 1l8q_A 157 EGGILVEIEL-DNKTRFKIIKEKLKE-------FN--LELRKEVIDYLLENT----KNVREIEGK---IKLIK 212 (324)
T ss_dssp HTSEEEECCC-CHHHHHHHHHHHHHH-------TT--CCCCHHHHHHHHHHC----SSHHHHHHH---HHHHH
T ss_pred cCceEEEeCC-CHHHHHHHHHHHHHh-------cC--CCCCHHHHHHHHHhC----CCHHHHHHH---HHHHH
Confidence 5 5899999 999999997766532 34 578999999998843 344555444 55555
No 144
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.43 E-value=1.1e-13 Score=147.65 Aligned_cols=162 Identities=22% Similarity=0.345 Sum_probs=110.6
Q ss_pred ccccChHHHHHHHHHHHHhhhc-------CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRS-------GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 499 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~-------~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 499 (938)
+.++|++.+++.+...+..... +. .+..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~----~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGA----KIPKGVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIEM 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSC----CCCSCCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTTS
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCC----CCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHHh
Confidence 4678888888888877653221 11 112258999999999999999999998 668888888766432
Q ss_pred hhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHH---------------HHHHHHHhhcCCceecCCCc
Q psy14500 500 HSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSD---------------VFNILLQILDDGRLTDNRGR 564 (938)
Q Consensus 500 ~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~---------------~~~~Ll~~le~g~~~~~~g~ 564 (938)
+.|.. ....+.++.......++||||||+|.+... .++.|+..++.-
T Consensus 84 -----~~~~~-----~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------- 145 (268)
T 2r62_A 84 -----FVGLG-----ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF-------- 145 (268)
T ss_dssp -----CSSSC-----SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS--------
T ss_pred -----hcchH-----HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc--------
Confidence 11211 112234455555556789999999998754 355566666531
Q ss_pred eeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 565 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 565 ~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
.....++++|+|||... .+++.+++ ||+..+.|++++.++..+++...+
T Consensus 146 ~~~~~~v~vi~ttn~~~------------------------~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 146 GSENAPVIVLAATNRPE------------------------ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCSCCEEEECBSCCT------------------------TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCch------------------------hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 01234578899999753 25667776 898899999999999999975544
No 145
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.42 E-value=4e-14 Score=166.95 Aligned_cols=197 Identities=13% Similarity=0.106 Sum_probs=117.8
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhhhc-CCC-CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEe----
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRSRS-GLS-DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI---- 491 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~-~~~-~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~---- 491 (938)
+..+.+.+...++||+.+++.+..++..... ... ...++..++||+||||||||++|+++|+.+. ..+...
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~---r~~~~~~~~~ 362 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP---RAVYTTGKGS 362 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS---CEECCCTTCS
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC---CceecCCCcc
Confidence 3456777889999999988877555432210 000 1112223799999999999999999998872 222111
Q ss_pred ccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecC-CCcee-ecC
Q psy14500 492 DMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDN-RGRTI-NFR 569 (938)
Q Consensus 492 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~-~g~~~-~~~ 569 (938)
++..+........ ..|.. ....+.+..+.++|+|||||+++++..++.|+++|+++.++.. .|... ...
T Consensus 363 ~~~~l~~~~~~~~-------~~g~~--~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~ 433 (595)
T 3f9v_A 363 TAAGLTAAVVREK-------GTGEY--YLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNA 433 (595)
T ss_dssp TTTTSEEECSSGG-------GTSSC--SEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECC
T ss_pred ccccccceeeecc-------ccccc--cccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecC
Confidence 1111111100000 00100 0112234445678999999999999999999999999998743 23333 346
Q ss_pred CeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 570 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 570 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
++.+|+|||.....+....... -.-.+++++++|||.++.+.++..++...|+.+.+
T Consensus 434 ~~~vIaatNp~~G~~~~~~~~~-----------~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il 490 (595)
T 3f9v_A 434 RAAVIAAGNPKFGRYISERPVS-----------DNINLPPTILSRFDLIFILKDQPGEQDRELANYIL 490 (595)
T ss_dssp CCEEEEEECCTTCCSCTTSCSC-----------TTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHH
T ss_pred ceEEEEEcCCcCCccCcccCch-----------hccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 7899999997532111000000 00157899999999766666665544445544433
No 146
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=1.7e-12 Score=140.07 Aligned_cols=147 Identities=12% Similarity=0.062 Sum_probs=109.1
Q ss_pred ccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHH
Q psy14500 35 GRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKK 114 (938)
Q Consensus 35 G~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~ 114 (938)
|++++++.|...+..+..++.||+||||+|||++|+++++.+.... . ....++.++.+.. ..+ ...++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~--~--~~~d~~~l~~~~~-----~~~--id~ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFP--P--KASDVLEIDPEGE-----NIG--IDDIRT 69 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTSC--C--CTTTEEEECCSSS-----CBC--HHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchhh--c--cCCCEEEEcCCcC-----CCC--HHHHHH
Confidence 6888999999998877777899999999999999999998642111 0 1235566664321 111 124677
Q ss_pred HHHHHHhc---CCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC--ceEEEEecChhHHHHhhhcCHHHHcccceE
Q psy14500 115 ILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQYIEKDAAFERRFQKI 189 (938)
Q Consensus 115 ~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~--~i~vI~~tn~~~~~~~~~ld~al~~Rf~~i 189 (938)
+++.+... ++..|+||||+|.|. .+.++.|+..+|.+ .+++|++|+.+. .+.+++++| .+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~lt--------~~a~naLLk~LEep~~~t~fIl~t~~~~-----kl~~tI~SR--~~ 134 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERMT--------QQAANAFLKALEEPPEYAVIVLNTRRWH-----YLLPTIKSR--VF 134 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGBC--------HHHHHHTHHHHHSCCTTEEEEEEESCGG-----GSCHHHHTT--SE
T ss_pred HHHHHhhccccCCceEEEeccHHHhC--------HHHHHHHHHHHhCCCCCeEEEEEECChH-----hChHHHHce--eE
Confidence 77777532 235799999999994 35688899999864 788888888876 899999999 89
Q ss_pred EeeCCCHHHHHHHHHhhh
Q psy14500 190 LVEEPDIEETISILRGLQ 207 (938)
Q Consensus 190 ~~~~p~~~e~~~il~~~~ 207 (938)
+|++|+.++....++..+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999887654
No 147
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=1.4e-12 Score=140.80 Aligned_cols=145 Identities=15% Similarity=0.255 Sum_probs=106.0
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhc--c-CCCceEEeccccccchhhhhhhcC
Q psy14500 431 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIF--N-NEESIIRIDMSEFIEKHSISRLIG 507 (938)
Q Consensus 431 Gq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~--~-~~~~~~~~~~~~~~~~~~~~~l~g 507 (938)
||+++++.+...++..+ .+++||+||||+|||++|+++++.+. . ....+..++.+.
T Consensus 1 g~~~~~~~L~~~i~~~~---------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~------------ 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE---------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG------------ 59 (305)
T ss_dssp ---CHHHHHHHHHHTCS---------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS------------
T ss_pred ChHHHHHHHHHHHHCCC---------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc------------
Confidence 78899999999987543 24899999999999999999998641 1 123444444321
Q ss_pred CCCCCccccccchhHHHHHhCC----CEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchh
Q psy14500 508 APPGYIGYEEGGYLTEIVRRKP----YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDK 583 (938)
Q Consensus 508 ~~~~~~g~~~~~~l~~~~~~~~----~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~ 583 (938)
...+.+..+.+...+...| +.|+||||+|.++...+|+|++.||+ +..+++||++|+..
T Consensus 60 ---~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEe-----------p~~~t~fIl~t~~~--- 122 (305)
T 2gno_A 60 ---ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEE-----------PPEYAVIVLNTRRW--- 122 (305)
T ss_dssp ---SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHS-----------CCTTEEEEEEESCG---
T ss_pred ---CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhC-----------CCCCeEEEEEECCh---
Confidence 0222223334444444333 58999999999999999999999997 56788899888753
Q ss_pred hhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 584 IKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 584 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
..+.|++.+| ++.|.|++.+++.+.+...+
T Consensus 123 ---------------------~kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 123 ---------------------HYLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ---------------------GGSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred ---------------------HhChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 2477899999 89999999999999876654
No 148
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.41 E-value=1.1e-10 Score=156.16 Aligned_cols=135 Identities=14% Similarity=0.189 Sum_probs=95.9
Q ss_pred HHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHH
Q psy14500 39 EIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKE 118 (938)
Q Consensus 39 ~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~ 118 (938)
-...+..+|... .+..+.||+|||||.+++.+|+.+ +..++.++|+.-.. + ..+..+|..
T Consensus 593 cy~tl~~Al~~~--~gg~~~GPaGtGKTet~k~La~~l----------gr~~~vfnC~~~~d---~-----~~~g~i~~G 652 (3245)
T 3vkg_A 593 CYLTLTQALESR--MGGNPFGPAGTGKTETVKALGSQL----------GRFVLVFCCDEGFD---L-----QAMSRIFVG 652 (3245)
T ss_dssp HHHHHHHHHHTT--CEEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEECSSCCC---H-----HHHHHHHHH
T ss_pred HHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHh----------CCeEEEEeCCCCCC---H-----HHHHHHHhh
Confidence 344455555433 445789999999999999999999 88899999865331 1 145666666
Q ss_pred HHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhc----------------c-------CCceEEEEecChhHHHHh
Q psy14500 119 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----------------S-------RGELHCIGATTLNEYRQY 175 (938)
Q Consensus 119 a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l----------------~-------~~~i~vI~~tn~~~~~~~ 175 (938)
+...+ +..++||++++.. ++...+.+.+ + .....+++|+|+ .|...
T Consensus 653 ~~~~G--aW~cfDEfNrl~~--------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr 721 (3245)
T 3vkg_A 653 LCQCG--AWGCFDEFNRLEE--------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGR 721 (3245)
T ss_dssp HHHHT--CEEEEETTTSSCH--------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGC
T ss_pred HhhcC--cEEEehhhhcCCH--------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCc
Confidence 66443 4899999999833 3222222111 1 124567778876 57777
Q ss_pred hhcCHHHHcccceEEeeCCCHHHHHHHHH
Q psy14500 176 IEKDAAFERRFQKILVEEPDIEETISILR 204 (938)
Q Consensus 176 ~~ld~al~~Rf~~i~~~~p~~~e~~~il~ 204 (938)
..+++++++||..|.+..|+.+...+|+-
T Consensus 722 ~eLP~nLk~lFr~v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 722 SNLPDNLKKLFRSMAMIKPDREMIAQVML 750 (3245)
T ss_dssp CCSCHHHHTTEEEEECCSCCHHHHHHHHH
T ss_pred ccChHHHHhhcEEEEEeCCCHHHHHHHHH
Confidence 79999999999999999999998888863
No 149
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=1.6e-12 Score=144.72 Aligned_cols=197 Identities=16% Similarity=0.248 Sum_probs=122.6
Q ss_pred ccccChHHHHHHHHHHH-HhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch------
Q psy14500 427 KRVVGQDEAISAVSNAI-RRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK------ 499 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l-~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~------ 499 (938)
+.++||+.+++.+...+ ... +.. +++|+||+|+|||++++++++.++.....-+.++...+...
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~--------~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~ 84 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR--------DLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLE 84 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT--------CCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------------
T ss_pred HHhcCCHHHHHHHHHHHhhCC--------CCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccce
Confidence 46889999988887766 321 122 49999999999999999999976543322122221111000
Q ss_pred ------hhhhhhcCCCCCCccccccchhHHH---H-H-------------hCCCEEEEEccccccCHHHHHHHHHhhcCC
Q psy14500 500 ------HSISRLIGAPPGYIGYEEGGYLTEI---V-R-------------RKPYSLILLDEIEKANSDVFNILLQILDDG 556 (938)
Q Consensus 500 ------~~~~~l~g~~~~~~g~~~~~~l~~~---~-~-------------~~~~~vl~lDEid~~~~~~~~~Ll~~le~g 556 (938)
.....+.+.. .+......+... + . ...+.|++|||++.+++..++.|++.|++
T Consensus 85 ~~~~~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~- 160 (354)
T 1sxj_E 85 LNVVSSPYHLEITPSD---MGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK- 160 (354)
T ss_dssp -CCEECSSEEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH-
T ss_pred eeeecccceEEecHhh---cCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHh-
Confidence 0000000000 011110011111 1 1 22457999999999999999999999986
Q ss_pred ceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHH
Q psy14500 557 RLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 636 (938)
Q Consensus 557 ~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~ 636 (938)
...++.+|++||... .+.+++.+|| ..+.|+|++.+++.+++...
T Consensus 161 ----------~~~~~~~Il~t~~~~------------------------~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 161 ----------YSKNIRLIMVCDSMS------------------------PIIAPIKSQC-LLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp ----------STTTEEEEEEESCSC------------------------SSCHHHHTTS-EEEECCCCCHHHHHHHHHHH
T ss_pred ----------hcCCCEEEEEeCCHH------------------------HHHHHHHhhc-eEEecCCcCHHHHHHHHHHH
Confidence 234577888888643 2567899999 79999999999999886665
Q ss_pred HHHHHHHHHccCCeEEEc-HHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 637 LNILKNKLLKMNMDLKIS-KAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 637 l~~~~~~~~~~~~~l~~~-~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+. ..+ +.++ +++++.|+..+ -||+......++++.
T Consensus 206 ~~-------~~~--~~~~~~~~l~~i~~~~------~G~~r~a~~~l~~~~ 241 (354)
T 1sxj_E 206 VT-------NER--IQLETKDILKRIAQAS------NGNLRVSLLMLESMA 241 (354)
T ss_dssp HH-------HHT--CEECCSHHHHHHHHHH------TTCHHHHHHHHTHHH
T ss_pred HH-------HcC--CCCCcHHHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 53 234 6788 99999998743 345555544455554
No 150
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.40 E-value=1e-11 Score=129.87 Aligned_cols=182 Identities=19% Similarity=0.277 Sum_probs=118.5
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhh---
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS--- 503 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~--- 503 (938)
..++|++..++.+...+..... .+.++|+||||||||++|+.+++.+.... ......+..........
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~--------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 93 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRI--------HHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQGR 93 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCC--------CSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHHHTTC
T ss_pred HHHhCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHHhccC
Confidence 4689999999999999875431 13699999999999999999999874322 11111111110000000
Q ss_pred --hhcCCCCCCccccccchhHHHHH-------hCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEE
Q psy14500 504 --RLIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 574 (938)
Q Consensus 504 --~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 574 (938)
.++..... +......+...+. ...+.+|+|||++.+++..++.|+..+++ ...++++|
T Consensus 94 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~-----------~~~~~~~i 160 (250)
T 1njg_A 94 FVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFL 160 (250)
T ss_dssp CSSEEEEETT--CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS-----------CCTTEEEE
T ss_pred CcceEEecCc--ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc-----------CCCceEEE
Confidence 00000000 0000111222222 12368999999999999999999999985 23567788
Q ss_pred EecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEc
Q psy14500 575 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 654 (938)
Q Consensus 575 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~ 654 (938)
++||... .+.+.+.+|+ ..+.|+|++.+++.+++...+.. .+ +.++
T Consensus 161 ~~t~~~~------------------------~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~-------~~--~~~~ 206 (250)
T 1njg_A 161 LATTDPQ------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-------EH--IAHE 206 (250)
T ss_dssp EEESCGG------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------TT--CCBC
T ss_pred EEeCChH------------------------hCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHh-------cC--CCCC
Confidence 8888532 3567788897 69999999999999997665532 33 5678
Q ss_pred HHHHHHHHhh
Q psy14500 655 KAALKKISNI 664 (938)
Q Consensus 655 ~~~~~~L~~~ 664 (938)
+++++.|++.
T Consensus 207 ~~~~~~l~~~ 216 (250)
T 1njg_A 207 PRALQLLARA 216 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8999988874
No 151
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.39 E-value=5.5e-13 Score=127.85 Aligned_cols=135 Identities=16% Similarity=0.095 Sum_probs=93.8
Q ss_pred CCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchH
Q psy14500 31 DPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF 108 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~ 108 (938)
++++|++..++++...+.. ....+|||+||||||||++|+++++..... +.+++ ++++.+....
T Consensus 1 ~~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-------~~~~v-~~~~~~~~~~------ 66 (145)
T 3n70_A 1 VELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-------QGEFV-YRELTPDNAP------ 66 (145)
T ss_dssp ---CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-------TSCCE-EEECCTTTSS------
T ss_pred CCceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-------CCCEE-EECCCCCcch------
Confidence 3689999999999987753 566789999999999999999999865333 44666 8877655331
Q ss_pred HHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC--CceEEEEecChhHHH--HhhhcCHHHHc
Q psy14500 109 EDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYR--QYIEKDAAFER 184 (938)
Q Consensus 109 ~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~~~--~~~~ld~al~~ 184 (938)
.....+..+. +.+|||||+|.+.+ +.+..|...+.. ..+++|++||.+... ..-.+.+.+..
T Consensus 67 --~~~~~~~~a~----~g~l~ldei~~l~~--------~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~ 132 (145)
T 3n70_A 67 --QLNDFIALAQ----GGTLVLSHPEHLTR--------EQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYY 132 (145)
T ss_dssp --CHHHHHHHHT----TSCEEEECGGGSCH--------HHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHH
T ss_pred --hhhcHHHHcC----CcEEEEcChHHCCH--------HHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHH
Confidence 2445555553 23899999999943 456667776643 457899999975422 12246788888
Q ss_pred ccce--EEeeC
Q psy14500 185 RFQK--ILVEE 193 (938)
Q Consensus 185 Rf~~--i~~~~ 193 (938)
|+.. |.+|+
T Consensus 133 rl~~~~i~lPp 143 (145)
T 3n70_A 133 CFAMTQIACLP 143 (145)
T ss_dssp HHHHHEEECCC
T ss_pred HhcCCEEeCCC
Confidence 9875 55544
No 152
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.39 E-value=3e-12 Score=146.74 Aligned_cols=212 Identities=14% Similarity=0.088 Sum_probs=129.3
Q ss_pred CccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh-----hhhhcCccccc
Q psy14500 32 PVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI-----ALLLAGTKYRG 106 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~-----~~l~~~~~~~g 106 (938)
.++|+++.++.+...+... .|+||+||||||||++|+++|+.+.. +..+..+++ +.+.+. +.+
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~--------~~~f~~~~~~~~t~~dL~G~--~~~ 90 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQN--------ARAFEYLMTRFSTPEEVFGP--LSI 90 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSS--------CCEEEEECCTTCCHHHHHCC--BC-
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhh--------hhHHHHHHHhcCCHHHhcCc--ccH
Confidence 6899999999998887665 69999999999999999999987622 122222222 222211 111
Q ss_pred hHHHHHHHHHHHHHhcC--CCeEEEEeCccccccCCCCCCccchhhhhhhhccCCc------------eEEEEecChhHH
Q psy14500 107 EFEDRLKKILKEISNNQ--KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE------------LHCIGATTLNEY 172 (938)
Q Consensus 107 ~~~~~l~~~~~~a~~~~--~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~------------i~vI~~tn~~~~ 172 (938)
... .-...+..+.... .+.||||||++.+. ...++.|+..|+.+. .++|+|||+.+-
T Consensus 91 ~~~-~~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe 161 (500)
T 3nbx_X 91 QAL-KDEGRYERLTSGYLPEAEIVFLDEIWKAG--------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPE 161 (500)
T ss_dssp ----------CBCCTTSGGGCSEEEEESGGGCC--------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCC
T ss_pred HHH-hhchhHHhhhccCCCcceeeeHHhHhhhc--------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCC
Confidence 100 0011121111110 24589999999873 456778888886432 135788886331
Q ss_pred HHhhhcCHHHHcccce-EEeeCCCH-HHHHHHHHhhhhhh-------------------hcccCCCCCHHHHHHHHHhhh
Q psy14500 173 RQYIEKDAAFERRFQK-ILVEEPDI-EETISILRGLQKKY-------------------EVHHGVEITDPAIVAASELSY 231 (938)
Q Consensus 173 ~~~~~ld~al~~Rf~~-i~~~~p~~-~e~~~il~~~~~~~-------------------~~~~~~~i~~~~l~~~~~~s~ 231 (938)
.....+++++||.. +.+++|+. +++..|++...... ....++.++++++++++.+..
T Consensus 162 --~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~ 239 (500)
T 3nbx_X 162 --ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQ 239 (500)
T ss_dssp --TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHH
T ss_pred --ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHH
Confidence 11345799999975 89999987 67888887543211 012367788888888887763
Q ss_pred hc--c--ccCCCchhhhhHHHHHHHHHHHhhc--CchhHHH
Q psy14500 232 RY--I--SDRFMPDKAIDLIDEAAAKIKIEID--SKPEIMD 266 (938)
Q Consensus 232 ~~--~--~~~~~p~~a~~ll~~a~~~~~~~~~--~~p~~l~ 266 (938)
.. . .....++....++..+.+.+..... ..|+++.
T Consensus 240 ~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 240 QLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 21 1 1123566777777777666655443 3455544
No 153
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.38 E-value=6.5e-13 Score=151.99 Aligned_cols=188 Identities=20% Similarity=0.340 Sum_probs=122.4
Q ss_pred ccccChHHHHHHHHHHHHhhhcC--CCC--CCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSG--LSD--AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 502 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~--~~~--~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 502 (938)
++|+|+++++..+.+.+...... +.. ..-|. .++|+||||||||++|++||..+ +.+++.++++++...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~-GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~--- 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM--- 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCS-EEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHh---
Confidence 56889999998888877543211 000 11222 59999999999999999999988 578999998876542
Q ss_pred hhhcCCCCCCccccccchhHHHHHh---CCCEEEEEccccccCH--------------HHHHHHHHhhcCCceecCCCce
Q psy14500 503 SRLIGAPPGYIGYEEGGYLTEIVRR---KPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRT 565 (938)
Q Consensus 503 ~~l~g~~~~~~g~~~~~~l~~~~~~---~~~~vl~lDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~ 565 (938)
+.|... ..+...+.. ..++|+||||||.+.. ..++.|+..|+.+.
T Consensus 104 ---------~~g~~~-~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-------- 165 (499)
T 2dhr_A 104 ---------FVGVGA-ARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-------- 165 (499)
T ss_dssp ---------CTTHHH-HHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC--------
T ss_pred ---------hhhhHH-HHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc--------
Confidence 222211 112233332 2358999999997642 45677777777532
Q ss_pred eecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHHHHHH
Q psy14500 566 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILKNK 643 (938)
Q Consensus 566 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~ 643 (938)
....+++|++||.+. .+++++++ ||+..|.+++++.++..+|+...+.
T Consensus 166 -~~~~viviAatn~p~------------------------~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~----- 215 (499)
T 2dhr_A 166 -KDTAIVVMAATNRPD------------------------ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR----- 215 (499)
T ss_dssp -SSCCCEEEECCSCGG------------------------GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS-----
T ss_pred -cCccEEEEEecCChh------------------------hcCcccccccccceEEecCCCCHHHHHHHHHHHHh-----
Confidence 224567888888642 25667775 8999999999999999998654321
Q ss_pred HHccCCeEEEcHHH-HHHHHhhcccccccc-cccccc
Q psy14500 644 LLKMNMDLKISKAA-LKKISNIGFDLIYGA-RDVHGC 678 (938)
Q Consensus 644 ~~~~~~~l~~~~~~-~~~L~~~~~~~~~~~-~dl~~~ 678 (938)
+ +.+++++ +..++. .+.... +||.+.
T Consensus 216 ----~--~~l~~dv~l~~lA~---~t~G~~gadL~~l 243 (499)
T 2dhr_A 216 ----G--KPLAEDVDLALLAK---RTPGFVGADLENL 243 (499)
T ss_dssp ----S--SCCCCSSTTHHHHT---TSCSCCHHHHHHH
T ss_pred ----c--CCCChHHHHHHHHH---hcCCCCHHHHHHH
Confidence 2 2334443 445544 233333 688777
No 154
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.38 E-value=2.5e-12 Score=144.91 Aligned_cols=211 Identities=21% Similarity=0.224 Sum_probs=140.2
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC--------CCceEEecccccc-
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--------EESIIRIDMSEFI- 497 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~--------~~~~~~~~~~~~~- 497 (938)
+.++|++..++.+...+.....+ ....+++|+||||||||++|+++++.+... +.+++.++|....
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~-----~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN-----EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGG 94 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT-----CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCS
T ss_pred CCCCChHHHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCC
Confidence 67999999999999988775433 122379999999999999999999987433 6788999987654
Q ss_pred chhh-----hhhhcCCCCCCccccccchh---HHHHHhCCCEEEEEccccccCHHH-HHH-HHHhhcCCceecCCCceee
Q psy14500 498 EKHS-----ISRLIGAPPGYIGYEEGGYL---TEIVRRKPYSLILLDEIEKANSDV-FNI-LLQILDDGRLTDNRGRTIN 567 (938)
Q Consensus 498 ~~~~-----~~~l~g~~~~~~g~~~~~~l---~~~~~~~~~~vl~lDEid~~~~~~-~~~-Ll~~le~g~~~~~~g~~~~ 567 (938)
.... ...+.|...+..|......+ ...+...+ .||+|||++.+.... ++. |..+++. .
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~-----------~ 162 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRS-----------D 162 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTS-----------S
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcC-----------C
Confidence 3221 23344555544444333222 22233333 399999999987642 555 5555543 1
Q ss_pred cCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHcc
Q psy14500 568 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 647 (938)
Q Consensus 568 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~ 647 (938)
.++.+|+|||.... ...+.+.+.+|+...+.|+|++.+++.+++...+.. .+ .
T Consensus 163 -~~~~iI~~t~~~~~---------------------~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~---~~--~ 215 (384)
T 2qby_B 163 -ANISVIMISNDINV---------------------RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY---GL--I 215 (384)
T ss_dssp -SCEEEEEECSSTTT---------------------TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH---TS--C
T ss_pred -cceEEEEEECCCch---------------------HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh---hc--c
Confidence 56788899886431 134678889998779999999999999997766542 01 1
Q ss_pred CCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 648 NMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 648 ~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+ ..+++++++.+++..... .|++....+.+..+.
T Consensus 216 ~--~~~~~~~~~~i~~~~~~~---~G~~r~a~~~l~~a~ 249 (384)
T 2qby_B 216 K--GTYDDEILSYIAAISAKE---HGDARKAVNLLFRAA 249 (384)
T ss_dssp T--TSCCSHHHHHHHHHHHTT---CCCHHHHHHHHHHHH
T ss_pred c--CCcCHHHHHHHHHHHHhc---cCCHHHHHHHHHHHH
Confidence 1 357889999998854211 245544444455544
No 155
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.38 E-value=5.8e-12 Score=142.10 Aligned_cols=202 Identities=16% Similarity=0.208 Sum_probs=136.7
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC-CCceEEeccccccchhhh---
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDMSEFIEKHSI--- 502 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~~~~~~~~~~--- 502 (938)
+.++|++..++.+...+.....+. ....++++|+||||||||++++++++.+... +.+++.++|.........
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~---~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNP---GHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHST---TSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC---CCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 568899999999999887654331 1111269999999999999999999998655 568889998776543221
Q ss_pred -hhhcCCCCCCcccccc---chhHHHHHh-CCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEec
Q psy14500 503 -SRLIGAPPGYIGYEEG---GYLTEIVRR-KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 577 (938)
Q Consensus 503 -~~l~g~~~~~~g~~~~---~~l~~~~~~-~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 577 (938)
...+|......+.... ..+...+.. ..+.||+|||++.+++..++.|+.++++..- ....++.+|++|
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~-------~~~~~~~iI~~~ 166 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEADK-------LGAFRIALVIVG 166 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCHHH-------HSSCCEEEEEEE
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhCCC-------CCcCCEEEEEEE
Confidence 2233433222222111 122223322 3467999999999999999999999975110 001367788888
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHH
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 656 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 656 (938)
|... +...+.+.+.+|+.. .+.|+|++.+++.+++...+.... ....++++
T Consensus 167 ~~~~---------------------~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~-------~~~~~~~~ 218 (389)
T 1fnn_A 167 HNDA---------------------VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL-------AEGSYSED 218 (389)
T ss_dssp SSTH---------------------HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB-------CTTSSCHH
T ss_pred CCch---------------------HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc-------CCCCCCHH
Confidence 8632 123477888899875 899999999999999776654311 11257899
Q ss_pred HHHHHHhhcc
Q psy14500 657 ALKKISNIGF 666 (938)
Q Consensus 657 ~~~~L~~~~~ 666 (938)
+++.+++..+
T Consensus 219 ~~~~l~~~~~ 228 (389)
T 1fnn_A 219 ILQMIADITG 228 (389)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 9999988654
No 156
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.37 E-value=3.4e-12 Score=148.95 Aligned_cols=202 Identities=16% Similarity=0.198 Sum_probs=127.5
Q ss_pred ccccChHHHHHHHHHHHHhhh----cCCCCCC----CCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSR----SGLSDAK----RPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 498 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~----~~~~~~~----~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 498 (938)
+.++|++.+++.+..++..+. .++..+. .+..++||+||||||||++|+++|+.+ +.+++.+++++...
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRS 115 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcch
Confidence 568999999999999987643 1222221 133589999999999999999999998 78999999988766
Q ss_pred hhhhhhhcCCCCCCccccccchhHHH----HHhCCCEEEEEccccccCHHH---HHHHHHhhcCCceecCCCceeecCCe
Q psy14500 499 KHSISRLIGAPPGYIGYEEGGYLTEI----VRRKPYSLILLDEIEKANSDV---FNILLQILDDGRLTDNRGRTINFRNT 571 (938)
Q Consensus 499 ~~~~~~l~g~~~~~~g~~~~~~l~~~----~~~~~~~vl~lDEid~~~~~~---~~~Ll~~le~g~~~~~~g~~~~~~~~ 571 (938)
.......+...... ....+.+... .....++||||||+|.+.... .+.|++++++. +.
T Consensus 116 ~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~-------------~~ 180 (516)
T 1sxj_A 116 KTLLNAGVKNALDN--MSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT-------------ST 180 (516)
T ss_dssp HHHHHHTGGGGTTB--CCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-------------SS
T ss_pred HHHHHHHHHHHhcc--ccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-------------CC
Confidence 43332222110000 0000001000 123456899999999987643 48888888752 12
Q ss_pred EEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeE
Q psy14500 572 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDL 651 (938)
Q Consensus 572 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l 651 (938)
.+|+++|.... ..+ +.+.+|+ ..+.|++++.+++.+++...+. ..+ +
T Consensus 181 ~iIli~~~~~~----------------------~~l-~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~-------~~~--~ 227 (516)
T 1sxj_A 181 PLILICNERNL----------------------PKM-RPFDRVC-LDIQFRRPDANSIKSRLMTIAI-------REK--F 227 (516)
T ss_dssp CEEEEESCTTS----------------------STT-GGGTTTS-EEEECCCCCHHHHHHHHHHHHH-------HHT--C
T ss_pred CEEEEEcCCCC----------------------ccc-hhhHhce-EEEEeCCCCHHHHHHHHHHHHH-------HcC--C
Confidence 24444443211 012 3455666 6999999999999988655443 234 4
Q ss_pred EEcHHHHHHHHhhcccccccccccccchHHHHHH
Q psy14500 652 KISKAALKKISNIGFDLIYGARDVHGCKKSLSIL 685 (938)
Q Consensus 652 ~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~ 685 (938)
.+++++++.|+... -||+..+...++.+
T Consensus 228 ~i~~~~l~~la~~s------~GdiR~~i~~L~~~ 255 (516)
T 1sxj_A 228 KLDPNVIDRLIQTT------RGDIRQVINLLSTI 255 (516)
T ss_dssp CCCTTHHHHHHHHT------TTCHHHHHHHHTHH
T ss_pred CCCHHHHHHHHHHc------CCcHHHHHHHHHHH
Confidence 58899999998743 35555554444433
No 157
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.36 E-value=3.3e-12 Score=133.72 Aligned_cols=165 Identities=14% Similarity=0.212 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCC
Q psy14500 433 DEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY 512 (938)
Q Consensus 433 ~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 512 (938)
..++..+...+... +..+++|+||||||||++|+++++.+...+.++..+++.++..... .
T Consensus 37 ~~~~~~l~~~~~~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-------- 97 (242)
T 3bos_A 37 DELIGALKSAASGD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST--A-------- 97 (242)
T ss_dssp HHHHHHHHHHHHTC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG--G--------
T ss_pred HHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--H--------
Confidence 45566666655421 1237999999999999999999999876677888888877543210 0
Q ss_pred ccccccchhHHHHHhCCCEEEEEccccccCHHH--HHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcc
Q psy14500 513 IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDV--FNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 590 (938)
Q Consensus 513 ~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~--~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~ 590 (938)
.+ ..+ ...++|+|||++.+.... ++.|+.+++.-. ......+|++||.....+
T Consensus 98 -------~~-~~~--~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~ii~~~~~~~~~~------ 152 (242)
T 3bos_A 98 -------LL-EGL--EQFDLICIDDVDAVAGHPLWEEAIFDLYNRVA---------EQKRGSLIVSASASPMEA------ 152 (242)
T ss_dssp -------GG-TTG--GGSSEEEEETGGGGTTCHHHHHHHHHHHHHHH---------HHCSCEEEEEESSCTTTT------
T ss_pred -------HH-Hhc--cCCCEEEEeccccccCCHHHHHHHHHHHHHHH---------HcCCCeEEEEcCCCHHHH------
Confidence 00 011 234699999999998765 888888887410 112223677777654322
Q ss_pred hHHHHHHHHHHHHhhccChHHhhcCC--eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhh
Q psy14500 591 DKEIIKLAVMNEVKIYFRPEFINRID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 664 (938)
Q Consensus 591 ~~~~~~~~~~~~l~~~~~~~l~~R~~--~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 664 (938)
..+.+.+.+|+. .++.|++++.+++.+++...+. ..+ +.++++++++|+..
T Consensus 153 --------------~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~-------~~~--~~~~~~~~~~l~~~ 205 (242)
T 3bos_A 153 --------------GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA-------MRG--LQLPEDVGRFLLNR 205 (242)
T ss_dssp --------------TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH-------HTT--CCCCHHHHHHHHHH
T ss_pred --------------HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHH
Confidence 124478889985 6999999999999999766553 234 56899999999873
No 158
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.36 E-value=2.8e-12 Score=158.86 Aligned_cols=183 Identities=21% Similarity=0.309 Sum_probs=127.6
Q ss_pred CCccccHHHHHHHHHHHhcC---------CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14500 31 DPVIGRDDEIRRAIQVLQRR---------SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 101 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~~~---------~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~ 101 (938)
+.++|++.+++.+...+.+. +..++||+||||||||++|+++++.+... +.+++.++++.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-------~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS-------GGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhccch
Confidence 46899999999988877532 11478999999999999999999998653 456777887654321
Q ss_pred c----------cccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC------------
Q psy14500 102 T----------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 159 (938)
Q Consensus 102 ~----------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~------------ 159 (938)
. .|.|..+ ...+...+. ...+.||||||++.+ +.++++.|+++++.+
T Consensus 631 ~~~s~l~g~~~~~~G~~~--~g~l~~~~~-~~~~~vl~lDEi~~l--------~~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEE--GGQLTEAVR-RRPYSVILFDEIEKA--------HPDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGGGGC----------------CHHHHHH-HCSSEEEEESSGGGS--------CHHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred hHHHHHcCCCCCCcCccc--cchHHHHHH-hCCCeEEEEeccccc--------CHHHHHHHHHHhccCceECCCCCEecc
Confidence 1 1112111 112222233 344679999999988 347888999999865
Q ss_pred -ceEEEEecChhH---------------HHH------hhhcCHHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcc---
Q psy14500 160 -ELHCIGATTLNE---------------YRQ------YIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVH--- 213 (938)
Q Consensus 160 -~i~vI~~tn~~~---------------~~~------~~~ld~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~--- 213 (938)
++++|+|||... ... ...+.|.|.+||+. +.|.+|+.+++..|++.++.++...
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~ 779 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 779 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 566999999621 111 11467899999964 8889999999999998887754332
Q ss_pred --cCCCCCHHHHHHHHHhhh
Q psy14500 214 --HGVEITDPAIVAASELSY 231 (938)
Q Consensus 214 --~~~~i~~~~l~~~~~~s~ 231 (938)
..+.++++++..++..+.
T Consensus 780 ~~~~~~~~~~a~~~L~~~~~ 799 (854)
T 1qvr_A 780 KRISLELTEAAKDFLAERGY 799 (854)
T ss_dssp TTCEEEECHHHHHHHHHHHC
T ss_pred CCceEEECHHHHHHHHHcCC
Confidence 235789999999988754
No 159
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.34 E-value=1.2e-12 Score=149.24 Aligned_cols=175 Identities=18% Similarity=0.271 Sum_probs=118.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEE
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 535 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 535 (938)
.+++|+||||||||++|++|++.+... +.+++.+++..+..... ..+.. .....+..... ....||||
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~-~~~~~--------~~~~~~~~~~~-~~~~vL~I 200 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLV-DSMKE--------GKLNEFREKYR-KKVDILLI 200 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHH-HHHHT--------TCHHHHHHHHT-TTCSEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHH-HHHHc--------ccHHHHHHHhc-CCCCEEEE
Confidence 479999999999999999999988543 67888888877643211 11100 00011111111 14579999
Q ss_pred ccccccCH--HHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh
Q psy14500 536 DEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN 613 (938)
Q Consensus 536 DEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ 613 (938)
||++.+.. ..++.|+..++.- ...+..+|+||+.....+ ..+.+.+++
T Consensus 201 DEi~~l~~~~~~q~~l~~~l~~l----------~~~~~~iIitt~~~~~~l--------------------~~l~~~L~s 250 (440)
T 2z4s_A 201 DDVQFLIGKTGVQTELFHTFNEL----------HDSGKQIVICSDREPQKL--------------------SEFQDRLVS 250 (440)
T ss_dssp ECGGGGSSCHHHHHHHHHHHHHH----------HTTTCEEEEEESSCGGGC--------------------SSCCHHHHH
T ss_pred eCcccccCChHHHHHHHHHHHHH----------HHCCCeEEEEECCCHHHH--------------------HHHHHHHHh
Confidence 99999886 7888898888641 112345667777655533 136788999
Q ss_pred cCC--eEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHHH
Q psy14500 614 RID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLK 687 (938)
Q Consensus 614 R~~--~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l~ 687 (938)
||. .++.+.+++.+++.+|+...+.. .+ +.++++++++|+... ..++|.+.+. ++++..
T Consensus 251 R~~~g~~i~l~~p~~e~r~~iL~~~~~~-------~~--~~i~~e~l~~la~~~---~gn~R~l~~~---L~~~~~ 311 (440)
T 2z4s_A 251 RFQMGLVAKLEPPDEETRKSIARKMLEI-------EH--GELPEEVLNFVAENV---DDNLRRLRGA---IIKLLV 311 (440)
T ss_dssp HHHSSBCCBCCCCCHHHHHHHHHHHHHH-------HT--CCCCTTHHHHHHHHC---CSCHHHHHHH---HHHHHH
T ss_pred hccCCeEEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhc---CCCHHHHHHH---HHHHHH
Confidence 995 58999999999999997765542 23 568999999998733 2456666665 555553
No 160
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.34 E-value=2.5e-12 Score=144.95 Aligned_cols=200 Identities=14% Similarity=0.140 Sum_probs=132.0
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC------CCceEEeccccccchh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN------EESIIRIDMSEFIEKH 500 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~------~~~~~~~~~~~~~~~~ 500 (938)
+.++|++..++.+...+.....+ ....+++|+||||||||++|+++++.+... +.+++.++|....+..
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~-----~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG-----EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS-----CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH
Confidence 56899999999999888654211 112379999999999999999999987432 6788899988765432
Q ss_pred h----hhhhcCCCCCCccccccc---hhHHHHHh-CCCEEEEEccccccCHH--HHHHHHHhhcCCceecCCCceee-cC
Q psy14500 501 S----ISRLIGAPPGYIGYEEGG---YLTEIVRR-KPYSLILLDEIEKANSD--VFNILLQILDDGRLTDNRGRTIN-FR 569 (938)
Q Consensus 501 ~----~~~l~g~~~~~~g~~~~~---~l~~~~~~-~~~~vl~lDEid~~~~~--~~~~Ll~~le~g~~~~~~g~~~~-~~ 569 (938)
. +...+|......|..... .+...+.. ....||||||++.+... .++.|..+++..... . ..
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~-------~~~~ 166 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL-------GDRV 166 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc-------CCCc
Confidence 2 122234433333332221 22223322 23579999999999876 777777766531100 1 34
Q ss_pred CeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCHHHHHHHHHHHHHHHHHHHHccC
Q psy14500 570 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQLNILKNKLLKMN 648 (938)
Q Consensus 570 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~ 648 (938)
++.+|++||.... ...+.+.+.+|+.. .+.|+|++.+++.+++...+... + .+
T Consensus 167 ~~~~I~~t~~~~~---------------------~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~---~--~~ 220 (387)
T 2v1u_A 167 WVSLVGITNSLGF---------------------VENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA---F--NP 220 (387)
T ss_dssp -CEEEEECSCSTT---------------------SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH---B--CT
T ss_pred eEEEEEEECCCch---------------------HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh---c--cC
Confidence 6678888886421 12467889999976 89999999999999987766421 0 11
Q ss_pred CeEEEcHHHHHHHHhhcc
Q psy14500 649 MDLKISKAALKKISNIGF 666 (938)
Q Consensus 649 ~~l~~~~~~~~~L~~~~~ 666 (938)
..+++++++.+++...
T Consensus 221 --~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 221 --GVLDPDVVPLCAALAA 236 (387)
T ss_dssp --TTBCSSHHHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHHH
Confidence 3578899999988543
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.32 E-value=1.2e-11 Score=147.17 Aligned_cols=221 Identities=14% Similarity=0.188 Sum_probs=138.3
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCC--------CCCcCCCeEEEE
Q psy14500 22 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEV--------PNSLLSKKILLL 93 (938)
Q Consensus 22 ~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~--------p~~~~~~~~~~~ 93 (938)
..+++|..|++++|++.+++.+...+... .+++|+|||||||||+|++++..+..... +.... .+.+..
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-~p~i~~ 108 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-MPRIKT 108 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-SCEEEE
T ss_pred cccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-CCcEEE
Confidence 35689999999999999999988887765 69999999999999999999997743210 00000 011111
Q ss_pred ehhhh----------------------------------------hcCccccchHHHHHHHHHHHH--------------
Q psy14500 94 DIALL----------------------------------------LAGTKYRGEFEDRLKKILKEI-------------- 119 (938)
Q Consensus 94 ~~~~l----------------------------------------~~~~~~~g~~~~~l~~~~~~a-------------- 119 (938)
.+... ..+.............+|...
T Consensus 109 ~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 109 VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred EecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccc
Confidence 00000 000000000000011111100
Q ss_pred --------HhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-----------------------ceEEEEecC
Q psy14500 120 --------SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-----------------------ELHCIGATT 168 (938)
Q Consensus 120 --------~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-----------------------~i~vI~~tn 168 (938)
.....+.+|||||++.|. ...++.|+..|+.+ ++++|++||
T Consensus 189 ~~~i~~g~~~~a~~gvL~LDEi~~l~--------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn 260 (604)
T 3k1j_A 189 HERVEPGMIHRAHKGVLFIDEIATLS--------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGN 260 (604)
T ss_dssp GGGEECCHHHHTTTSEEEETTGGGSC--------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEEC
T ss_pred cccccCceeeecCCCEEEEechhhCC--------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecC
Confidence 001123499999999983 35677788777532 467999999
Q ss_pred hhHHHHhhhcCHHHHcccce----EEeeCC---CHHHHHHHHHhhhhhhhcc-cCCCCCHHHHHHHHHhhhhccccCC--
Q psy14500 169 LNEYRQYIEKDAAFERRFQK----ILVEEP---DIEETISILRGLQKKYEVH-HGVEITDPAIVAASELSYRYISDRF-- 238 (938)
Q Consensus 169 ~~~~~~~~~ld~al~~Rf~~----i~~~~p---~~~e~~~il~~~~~~~~~~-~~~~i~~~~l~~~~~~s~~~~~~~~-- 238 (938)
+... ..++++|++||.. +.|+.. ..+....+++.+....... ....++++++..++..+.+....+.
T Consensus 261 ~~~~---~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l 337 (604)
T 3k1j_A 261 LDTV---DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHL 337 (604)
T ss_dssp HHHH---HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEE
T ss_pred HHHH---hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhcccccc
Confidence 8742 2689999999962 444322 4566677776666554322 3357999999999998877666554
Q ss_pred --CchhhhhHHHHHHHHHHH
Q psy14500 239 --MPDKAIDLIDEAAAKIKI 256 (938)
Q Consensus 239 --~p~~a~~ll~~a~~~~~~ 256 (938)
.++.+..+++.+...+..
T Consensus 338 ~~~~R~l~~llr~A~~~A~~ 357 (604)
T 3k1j_A 338 TLRLRDLGGIVRAAGDIAVK 357 (604)
T ss_dssp ECCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHh
Confidence 578888888887665543
No 162
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.32 E-value=2.9e-13 Score=129.43 Aligned_cols=130 Identities=9% Similarity=0.134 Sum_probs=88.6
Q ss_pred CccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHH
Q psy14500 32 PVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE 109 (938)
Q Consensus 32 ~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~ 109 (938)
+++|++..++++...+.. ....+|||+||||||||++|+++++.. . +++.++++.+...
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~~-------- 65 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLID-------- 65 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHHH--------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCChH--------
Confidence 578999999888887653 566789999999999999999999765 3 6777777654421
Q ss_pred HHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC---CceEEEEecChhHHH-HhhhcCHHHHcc
Q psy14500 110 DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---GELHCIGATTLNEYR-QYIEKDAAFERR 185 (938)
Q Consensus 110 ~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---~~i~vI~~tn~~~~~-~~~~ld~al~~R 185 (938)
....++..+. +.+|||||++.+.. +.+..|...++. ..+++|++||.+... ..- +++.+..|
T Consensus 66 -~~~~~~~~a~----~~~l~lDei~~l~~--------~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-~~~~L~~r 131 (143)
T 3co5_A 66 -MPMELLQKAE----GGVLYVGDIAQYSR--------NIQTGITFIIGKAERCRVRVIASCSYAAGSDGIS-CEEKLAGL 131 (143)
T ss_dssp -CHHHHHHHTT----TSEEEEEECTTCCH--------HHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--C-HHHHHHHH
T ss_pred -hhhhHHHhCC----CCeEEEeChHHCCH--------HHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-ccHHHHHH
Confidence 1344454433 34899999999843 456667777763 458999999975311 111 55778889
Q ss_pred cceEEeeCC
Q psy14500 186 FQKILVEEP 194 (938)
Q Consensus 186 f~~i~~~~p 194 (938)
|..+.+..|
T Consensus 132 l~~~~i~lP 140 (143)
T 3co5_A 132 FSESVVRIP 140 (143)
T ss_dssp SSSEEEEEC
T ss_pred hcCcEEeCC
Confidence 876444444
No 163
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.32 E-value=8.4e-12 Score=131.93 Aligned_cols=187 Identities=21% Similarity=0.343 Sum_probs=114.9
Q ss_pred ccccChHHHHHHHHHHHHhhh-------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch
Q psy14500 427 KRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 499 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~-------~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 499 (938)
+.++|++.++..+.+...... .++. -+. .++|+||||||||+++++|+..+ ..+++.+++.++...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~---~~~-g~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR---IPK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM 88 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCC---CCS-EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHS
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCC---CCC-eEEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHHHH
Confidence 346677776666665544321 1111 122 49999999999999999999988 467888877654321
Q ss_pred hhhhhhcCCCCCCccccc--cchhHHHHHhCCCEEEEEccccccC--------------HHHHHHHHHhhcCCceecCCC
Q psy14500 500 HSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN--------------SDVFNILLQILDDGRLTDNRG 563 (938)
Q Consensus 500 ~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lDEid~~~--------------~~~~~~Ll~~le~g~~~~~~g 563 (938)
+.+... .+.++.......++++++||++.+. ...++.++..|+.|.
T Consensus 89 ------------~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~------ 150 (254)
T 1ixz_A 89 ------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE------ 150 (254)
T ss_dssp ------------CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC------
T ss_pred ------------HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC------
Confidence 111111 1122333333446899999998653 134567777776532
Q ss_pred ceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHHHH
Q psy14500 564 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILK 641 (938)
Q Consensus 564 ~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~~~ 641 (938)
....++++++||.+. .+++.+++ ||+..+.+++++.++..+|+...+.
T Consensus 151 ---~~~~~i~~a~t~~p~------------------------~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--- 200 (254)
T 1ixz_A 151 ---KDTAIVVMAATNRPD------------------------ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--- 200 (254)
T ss_dssp ---TTCCEEEEEEESCGG------------------------GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT---
T ss_pred ---CCCCEEEEEccCCch------------------------hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc---
Confidence 123456777777632 25677776 8999999999999999998754321
Q ss_pred HHHHccCCeEEEcHHH-HHHHHhhcccccccccccccc
Q psy14500 642 NKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 642 ~~~~~~~~~l~~~~~~-~~~L~~~~~~~~~~~~dl~~~ 678 (938)
+ +.+++++ +..++.. .+.+..+||.+.
T Consensus 201 ------~--~~~~~~~~~~~la~~--~~G~~~~dl~~~ 228 (254)
T 1ixz_A 201 ------G--KPLAEDVDLALLAKR--TPGFVGADLENL 228 (254)
T ss_dssp ------T--SCBCTTCCHHHHHHT--CTTCCHHHHHHH
T ss_pred ------C--CCCCcccCHHHHHHH--cCCCCHHHHHHH
Confidence 1 2233333 5566552 223344678777
No 164
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.32 E-value=1.7e-11 Score=130.56 Aligned_cols=131 Identities=21% Similarity=0.332 Sum_probs=94.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccc--cchhHHHHHhCCCEEEEEc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLD 536 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~lD 536 (938)
.++|+||||||||++|++||..+ +.+++.++..++... +.|... .+.++...+...++++|+|
T Consensus 46 GvlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l~~~------------~~~~~~~~i~~vf~~a~~~~p~i~~~D 110 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLAKAVANES---GLNFISVKGPELLNM------------YVGESERAVRQVFQRAKNSAPCVIFFD 110 (274)
T ss_dssp EEEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTTCSS------------TTHHHHHHHHHHHHHHHHTCSEEEEEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHHHhh------------hhhHHHHHHHHHHHHHHhcCCCeEeee
Confidence 39999999999999999999987 557888887765432 222211 1233343445567999999
Q ss_pred cccccC-----------HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhh
Q psy14500 537 EIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI 605 (938)
Q Consensus 537 Eid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 605 (938)
|++.+. ....+.++..|+.|. ....++++++||.+.
T Consensus 111 eid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~---------~~~~~i~ia~tn~p~------------------------ 157 (274)
T 2x8a_A 111 EVDALCPRRSDRETGASVRVVNQLLTEMDGLE---------ARQQVFIMAATNRPD------------------------ 157 (274)
T ss_dssp TCTTTCC---------CTTHHHHHHHHHHTCC---------STTCEEEEEEESCGG------------------------
T ss_pred hhhhhhcccCCCcchHHHHHHHHHHHhhhccc---------ccCCEEEEeecCChh------------------------
Confidence 999753 245677777777542 224567778888643
Q ss_pred ccChHHhh--cCCeEEEccCCCHHHHHHHHHHHH
Q psy14500 606 YFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 637 (938)
Q Consensus 606 ~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l 637 (938)
.++++++. |||..|.++.++.++..+|++..+
T Consensus 158 ~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 158 IIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 36788886 999999999999999999976544
No 165
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.31 E-value=1.1e-11 Score=142.45 Aligned_cols=173 Identities=20% Similarity=0.295 Sum_probs=114.4
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-------CCCceEEeccccccch
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIEK 499 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~~ 499 (938)
+.++|++..++.+...+.+.. .+++||+||||||||++|+++|+.+.. .+.+++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~---------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT---------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS---------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------
T ss_pred CCccCcHHHHHHHHHHHhccC---------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----
Confidence 469999999999999987532 237999999999999999999999844 24556777765
Q ss_pred hhhhhhcCCCCCCcccccc--chhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEec
Q psy14500 500 HSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 577 (938)
Q Consensus 500 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 577 (938)
..|.|..+. +.+...+....++||||| ...++++.|++.|+.| ++++|++|
T Consensus 246 ----------~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g-------------~v~vI~at 298 (468)
T 3pxg_A 246 ----------TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG-------------ELQCIGAT 298 (468)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------SCEEEEEC
T ss_pred ----------ccccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC-------------CEEEEecC
Confidence 113333222 334455566678999999 5677889999999864 35688888
Q ss_pred CCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHH
Q psy14500 578 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 657 (938)
Q Consensus 578 n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 657 (938)
|.+...- ...+++.|.+||+ +|.|++++.+++..|+...+..+.. ..+ +.+++++
T Consensus 299 ~~~e~~~-------------------~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~---~~~--~~i~~~a 353 (468)
T 3pxg_A 299 TLDEYRK-------------------YIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEA---HHR--VSITDDA 353 (468)
T ss_dssp CTTTTHH-------------------HHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGG---GSS--CSCCHHH
T ss_pred CHHHHHH-------------------HhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHH---hcC--CCCCHHH
Confidence 8754200 0135789999996 7999999999999997754433221 123 6689999
Q ss_pred HHHHHhhc
Q psy14500 658 LKKISNIG 665 (938)
Q Consensus 658 ~~~L~~~~ 665 (938)
+.+++...
T Consensus 354 l~~l~~~s 361 (468)
T 3pxg_A 354 IEAAVKLS 361 (468)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998743
No 166
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.29 E-value=6.9e-11 Score=130.02 Aligned_cols=179 Identities=18% Similarity=0.339 Sum_probs=119.4
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhc
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 506 (938)
+.++||+.+++.+...+...... ..+..+++|+||||||||++|++||..+ +.++.......+...
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~----~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg~~~~~~------- 90 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR----GEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVLVKQ------- 90 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH----TCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTCCSH-------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEechHhcCH-------
Confidence 45779999999988888754211 1223479999999999999999999998 444443333221111
Q ss_pred CCCCCCccccccchhHHHHH-hCCCEEEEEccccccCHHHHHHHHHhhcCCceec--CCC---ce--eecCCeEEEEecC
Q psy14500 507 GAPPGYIGYEEGGYLTEIVR-RKPYSLILLDEIEKANSDVFNILLQILDDGRLTD--NRG---RT--INFRNTIIVMTSN 578 (938)
Q Consensus 507 g~~~~~~g~~~~~~l~~~~~-~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~--~~g---~~--~~~~~~iiI~ttn 578 (938)
..+..... .....|+|+||++.+.+.+++.|+..++.+.... ..+ +. .....+.++.+++
T Consensus 91 ------------~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 91 ------------GDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp ------------HHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred ------------HHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 11222221 2345799999999999999999998887643210 001 11 1123455666666
Q ss_pred CCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHH
Q psy14500 579 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 658 (938)
Q Consensus 579 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 658 (938)
.. ..+++.+.+||...+.|++++.+++.+++...... .+ +.++++++
T Consensus 159 ~~------------------------~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-------~~--~~~~~~~~ 205 (334)
T 1in4_A 159 RS------------------------GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL-------MD--VEIEDAAA 205 (334)
T ss_dssp CG------------------------GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------TT--CCBCHHHH
T ss_pred Cc------------------------ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH-------cC--CCcCHHHH
Confidence 42 23788999999878999999999999997765432 23 56889999
Q ss_pred HHHHhh
Q psy14500 659 KKISNI 664 (938)
Q Consensus 659 ~~L~~~ 664 (938)
.+|++.
T Consensus 206 ~~ia~~ 211 (334)
T 1in4_A 206 EMIAKR 211 (334)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999874
No 167
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.29 E-value=2.1e-12 Score=136.38 Aligned_cols=118 Identities=13% Similarity=0.153 Sum_probs=84.5
Q ss_pred ccccccccchHHHHHHHHHhc---ccC-CccccccccccCCCCeeEehhHHHHHhcC--CccEEEcCCChHHHHHHHhcc
Q psy14500 670 YGARDVHGCKKSLSILLKKIH---KKS-PEANFIFLGDLINKGPQSLDTLRMVYSMR--NYAKIVLGNHEIHLLDVLINI 743 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~---~~~-~~~~li~~GD~~drg~~~~~v~~~~~~~~--~~~~~v~GNHe~~~l~~~~~~ 743 (938)
+.++|+|+++.++.++++.+. ... ..|.++++||++++|+.+.++++++.++. ..+++|+||||.++..+....
T Consensus 5 ~~isD~H~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~~~~~~~~l~~l~~~~~~~~v~GNhD~~~~~~~~~~ 84 (252)
T 1nnw_A 5 AVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPHA 84 (252)
T ss_dssp EEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHHSCEEEECCHHHHHHHHSCTTC
T ss_pred EEEeecCCCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCCHHHHHHHHHhhHhhcCeeEEecchHHHhhcccccc
Confidence 468999999999999998876 432 46899999999999999889999998863 358999999998876643221
Q ss_pred ccCCc-----c----ccHHHhhCCCCHHHHHHHHhcCCceEEeC----CEEEEeccc
Q psy14500 744 NKKSK-----L----DTFDDILDAPDKKKLVSWLRTQPLAIYYK----KYLMIHAGV 787 (938)
Q Consensus 744 ~~~~~-----~----~~~~~~~~~~~~~~~~~~l~~lp~~~~~~----~~~~vHAg~ 787 (938)
..... . .....|......++.++||+++|..+..+ +++++||+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~~~~~i~~~H~~p 141 (252)
T 1nnw_A 85 TDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSP 141 (252)
T ss_dssp SSSGGGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEEETTEEEEEESSCS
T ss_pred CCcccccchhhhHHHHHHHHHHHHHCCHHHHHHHHhCCceEEEeeCCcEEEEEcCCC
Confidence 10000 0 00111222222457789999999887642 799999985
No 168
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.28 E-value=2.2e-11 Score=130.55 Aligned_cols=187 Identities=21% Similarity=0.340 Sum_probs=114.9
Q ss_pred ccccChHHHHHHHHHHHHhhh-------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch
Q psy14500 427 KRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 499 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~-------~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 499 (938)
+.++|+++++..+........ .++. -+. .++|+||||||||+++++|+..+ ..+++.+++.++...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~---~~~-gvll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGAR---IPK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM 112 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCC---CCC-EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHS
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCC---CCC-eEEEECCCcChHHHHHHHHHHHc---CCCEEEecHHHHHHH
Confidence 456777777776666554321 1111 122 49999999999999999999988 467888877654321
Q ss_pred hhhhhhcCCCCCCcccc--ccchhHHHHHhCCCEEEEEccccccC--------------HHHHHHHHHhhcCCceecCCC
Q psy14500 500 HSISRLIGAPPGYIGYE--EGGYLTEIVRRKPYSLILLDEIEKAN--------------SDVFNILLQILDDGRLTDNRG 563 (938)
Q Consensus 500 ~~~~~l~g~~~~~~g~~--~~~~l~~~~~~~~~~vl~lDEid~~~--------------~~~~~~Ll~~le~g~~~~~~g 563 (938)
+.+.. ..+.++.......++++++||++.+. ....+.++..|+.|.
T Consensus 113 ------------~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~------ 174 (278)
T 1iy2_A 113 ------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE------ 174 (278)
T ss_dssp ------------TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC------
T ss_pred ------------HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC------
Confidence 11111 11223333343456899999998652 133455566665432
Q ss_pred ceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhh--cCCeEEEccCCCHHHHHHHHHHHHHHHH
Q psy14500 564 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILK 641 (938)
Q Consensus 564 ~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~--R~~~~i~f~~l~~e~~~~i~~~~l~~~~ 641 (938)
....++++++||.+. .+++.+++ ||+..+.|++++.++..+|+...+.
T Consensus 175 ---~~~~~i~~a~t~~p~------------------------~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--- 224 (278)
T 1iy2_A 175 ---KDTAIVVMAATNRPD------------------------ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--- 224 (278)
T ss_dssp ---TTCCEEEEEEESCTT------------------------SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT---
T ss_pred ---CCCCEEEEEecCCch------------------------hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHc---
Confidence 123467777888643 25677776 8999999999999999999764332
Q ss_pred HHHHccCCeEEEcHHH-HHHHHhhcccccccccccccc
Q psy14500 642 NKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 678 (938)
Q Consensus 642 ~~~~~~~~~l~~~~~~-~~~L~~~~~~~~~~~~dl~~~ 678 (938)
+ +.+++++ +..++.. + +.+..+||.+.
T Consensus 225 ------~--~~~~~~~~~~~la~~-~-~G~~~~dl~~l 252 (278)
T 1iy2_A 225 ------G--KPLAEDVDLALLAKR-T-PGFVGADLENL 252 (278)
T ss_dssp ------T--SCBCTTCCHHHHHHT-C-TTCCHHHHHHH
T ss_pred ------c--CCCCcccCHHHHHHH-c-CCCCHHHHHHH
Confidence 1 2233333 5555541 1 22333677776
No 169
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.28 E-value=3.9e-12 Score=127.88 Aligned_cols=156 Identities=21% Similarity=0.298 Sum_probs=104.8
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-------CCCceEEeccccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIE 498 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~ 498 (938)
.+.++|++..++.+...+.... ..+++|+||||||||++|+++++.+.. .+.+++.+++..+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA 91 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS---------SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT
T ss_pred ccccccchHHHHHHHHHHhcCC---------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc
Confidence 4568899999999888875421 237999999999999999999998843 356777777765432
Q ss_pred hhhhhhhcCCCCCCccccc--cchhHHHH-HhCCCEEEEEccccccC--------HHHHHHHHHhhcCCceecCCCceee
Q psy14500 499 KHSISRLIGAPPGYIGYEE--GGYLTEIV-RRKPYSLILLDEIEKAN--------SDVFNILLQILDDGRLTDNRGRTIN 567 (938)
Q Consensus 499 ~~~~~~l~g~~~~~~g~~~--~~~l~~~~-~~~~~~vl~lDEid~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~ 567 (938)
.. .+.|... ...+...+ +...+.||+|||++.+. ..+++.|..+++.+
T Consensus 92 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~----------- 150 (195)
T 1jbk_A 92 GA----------KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARG----------- 150 (195)
T ss_dssp TT----------CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTT-----------
T ss_pred cC----------CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccC-----------
Confidence 10 0111110 01122222 33456799999999985 44577888877652
Q ss_pred cCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCCHHHHHHHH
Q psy14500 568 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 633 (938)
Q Consensus 568 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i~ 633 (938)
++.+|++||..... ....+.+.+.+||+ .+.|++++.++..+|+
T Consensus 151 --~~~~i~~~~~~~~~-------------------~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 151 --ELHCVGATTLDEYR-------------------QYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp --SCCEEEEECHHHHH-------------------HHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred --CeEEEEeCCHHHHH-------------------HHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 34578888742210 01135789999996 7999999999887763
No 170
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.24 E-value=4.7e-11 Score=132.04 Aligned_cols=215 Identities=12% Similarity=0.097 Sum_probs=131.2
Q ss_pred HHHHHHHhhccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHH-HHHhccCCCceEEeccccc
Q psy14500 418 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTL-SACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 418 l~~l~~~l~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~l-a~~l~~~~~~~~~~~~~~~ 496 (938)
...+.+.+.. |+||+.+++.+.-++..... ..+...++||.|+||| ||++|+++ ++.+.+ ..+....++..
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~GG~~----k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR--~~ft~g~~ss~ 276 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLFSCVG----KNSERLHVLLAGYPVV-CSEILHHVLDHLAPR--GVYVDLRRTEL 276 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHTTCCS----SGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS--EEEEEGGGCCH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHcCCcc----ccCCceeEEEECCCCh-HHHHHHHHHHHhCCC--eEEecCCCCCc
Confidence 4567778888 99999998888777743210 0122237999999999 99999999 776621 12222122110
Q ss_pred cchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccccccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEe
Q psy14500 497 IEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 576 (938)
Q Consensus 497 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 576 (938)
..+.+...+-.| ...-.+.+..+.++|+|+|||+++++..|.+|++.||++.++.. |. .-..++.+|+|
T Consensus 277 ------~gLt~s~r~~tG---~~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA 345 (506)
T 3f8t_A 277 ------TDLTAVLKEDRG---WALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAA 345 (506)
T ss_dssp ------HHHSEEEEESSS---EEEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEE
T ss_pred ------cCceEEEEcCCC---cccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEE
Confidence 111111000011 01112345556779999999999999999999999999999877 66 45577899999
Q ss_pred cCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCC-CHHH----HHH-HHHHHHHHHHHHHHccCCe
Q psy14500 577 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYL-NRKN----ILS-IANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 577 tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l-~~e~----~~~-i~~~~l~~~~~~~~~~~~~ 650 (938)
+|.-. .... ..+. -...+++++++|||.++....+ +.+. ... +-...+.++....+...+.
T Consensus 346 ~NP~~-~yd~--~~s~----------~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~ 412 (506)
T 3f8t_A 346 INPGE-QWPS--DPPI----------ARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPA 412 (506)
T ss_dssp ECCCC---CC--SCGG----------GGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSC
T ss_pred eCccc-ccCC--CCCc----------cccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCC
Confidence 99743 1100 0000 0236899999999976655443 2211 111 1113344444444434556
Q ss_pred EEEcHHHHHHHHhh
Q psy14500 651 LKISKAALKKISNI 664 (938)
Q Consensus 651 l~~~~~~~~~L~~~ 664 (938)
..+++++.++|.+.
T Consensus 413 p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 413 PELTEEARKRLEHW 426 (506)
T ss_dssp CEECHHHHHHHHHH
T ss_pred ceeCHHHHHHHHHH
Confidence 88999999998873
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.19 E-value=2.1e-10 Score=130.34 Aligned_cols=217 Identities=15% Similarity=0.113 Sum_probs=134.8
Q ss_pred CCccccHHHHHHHHHHH-hc------CCCCCcEE--EcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-
Q psy14500 31 DPVIGRDDEIRRAIQVL-QR------RSKNNPVL--IGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA- 100 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l-~~------~~~~~vLL--~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~- 100 (938)
+.++|++++++.+...+ .. ....+++| +||||+|||++++.+++.+..... ....+..++.+++.....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA-KEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHH-HTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHh-ccCCceeEEEEECCCCCCH
Confidence 68999999999998887 42 34567899 999999999999999988743100 000134556666532100
Q ss_pred -----------Ccc--ccch-HHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc-----C--C
Q psy14500 101 -----------GTK--YRGE-FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-----R--G 159 (938)
Q Consensus 101 -----------~~~--~~g~-~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~-----~--~ 159 (938)
+.. ..+. ....+..+...+...+.+.||+|||+|.+..... .+.+....+...+. . .
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHHHHHHTHHHHSCCTTSCC
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHHHHHHHHHHhcccCCCCc
Confidence 000 0011 1222233333333335588999999999864210 11233333333332 3 6
Q ss_pred ceEEEEecChhHHHHhhhcC---HHHHcccce-EEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccc
Q psy14500 160 ELHCIGATTLNEYRQYIEKD---AAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 235 (938)
Q Consensus 160 ~i~vI~~tn~~~~~~~~~ld---~al~~Rf~~-i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~ 235 (938)
.+.+|++|+..++.. .++ +.+.++|.. +.|++++.++...++....... .....++++++..++..+....+
T Consensus 179 ~v~lI~~~~~~~~~~--~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 179 RIGFLLVASDVRALS--YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELG--LRDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp BEEEEEEEEETHHHH--HHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHH--BCTTSCCHHHHHHHHHHHCGGGT
T ss_pred eEEEEEEeccccHHH--HHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhc--CCCCCCChHHHHHHHHHHHHhcc
Confidence 788998887665322 234 677788764 9999999999999998765432 12345788999999998873222
Q ss_pred cCCCchhhhhHHHHHHHHH
Q psy14500 236 DRFMPDKAIDLIDEAAAKI 254 (938)
Q Consensus 236 ~~~~p~~a~~ll~~a~~~~ 254 (938)
..+.|+.+..++..+....
T Consensus 255 ~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMA 273 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 2255688888887765443
No 172
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.19 E-value=8.8e-11 Score=132.09 Aligned_cols=196 Identities=15% Similarity=0.173 Sum_probs=127.5
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC---CCceEEeccccccchhhh-
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN---EESIIRIDMSEFIEKHSI- 502 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~---~~~~~~~~~~~~~~~~~~- 502 (938)
+.++|++..++.+...+.....+ ....+++|+||||||||++++++++.+... +.+++.++|.........
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~-----~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYRE-----EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGT-----CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHH
Confidence 56889999999998887654221 112369999999999999999999987433 567888888665432211
Q ss_pred ---hhhcCCCCCCcccccc---chhHHHHHhCC-CEEEEEccccccC----HHHHHHHHHhhcCCceecCCCceeecCCe
Q psy14500 503 ---SRLIGAPPGYIGYEEG---GYLTEIVRRKP-YSLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGRTINFRNT 571 (938)
Q Consensus 503 ---~~l~g~~~~~~g~~~~---~~l~~~~~~~~-~~vl~lDEid~~~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 571 (938)
...+|......|.... ..+...+.... +.||+|||++.+. ...+..|+..+++. ...++
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~----------~~~~~ 164 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV----------NKSKI 164 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC----------CC--E
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc----------CCCeE
Confidence 1122332222222111 22233333333 6899999999875 56778888877641 12356
Q ss_pred EEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCe-EEEccCCCHHHHHHHHHHHHHHHHHHHHccCCe
Q psy14500 572 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 650 (938)
Q Consensus 572 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~-~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~ 650 (938)
.+|++||.... ...+.+.+.+|+.. .+.|+|++.+++.+++...+... ...
T Consensus 165 ~~I~~~~~~~~---------------------~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~-------~~~ 216 (386)
T 2qby_A 165 SFIGITNDVKF---------------------VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA-------FKP 216 (386)
T ss_dssp EEEEEESCGGG---------------------GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH-------BCS
T ss_pred EEEEEECCCCh---------------------HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh-------ccC
Confidence 77888875321 12356778888864 89999999999999977655321 112
Q ss_pred EEEcHHHHHHHHhhc
Q psy14500 651 LKISKAALKKISNIG 665 (938)
Q Consensus 651 l~~~~~~~~~L~~~~ 665 (938)
..+++++++++....
T Consensus 217 ~~~~~~~~~~l~~~~ 231 (386)
T 2qby_A 217 GVLPDNVIKLCAALA 231 (386)
T ss_dssp SCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 457899999998744
No 173
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.18 E-value=3.2e-11 Score=120.53 Aligned_cols=148 Identities=22% Similarity=0.277 Sum_probs=98.3
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-------CCCceEEeccccccc
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIE 498 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~ 498 (938)
.+.++|++..++.+...+.... ..+++|+||||||||++|+++++.+.. .+.+++.+++..+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~---------~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT---------KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIA 91 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS---------SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC---------CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhc
Confidence 4578999999999888875321 237899999999999999999998854 255677777655432
Q ss_pred hhhhhhhcCCCCCCccccc--cchhHHHHHhC-CCEEEEEccccccC---------HHHHHHHHHhhcCCceecCCCcee
Q psy14500 499 KHSISRLIGAPPGYIGYEE--GGYLTEIVRRK-PYSLILLDEIEKAN---------SDVFNILLQILDDGRLTDNRGRTI 566 (938)
Q Consensus 499 ~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~-~~~vl~lDEid~~~---------~~~~~~Ll~~le~g~~~~~~g~~~ 566 (938)
.. .+.|... ...+...+... .+.+|||||++.+. ..+++.|...+++
T Consensus 92 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~----------- 150 (187)
T 2p65_A 92 GA----------KYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR----------- 150 (187)
T ss_dssp HC----------CSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT-----------
T ss_pred CC----------CchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc-----------
Confidence 10 0111100 11122223333 46799999999987 5678888888875
Q ss_pred ecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEccCCC
Q psy14500 567 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN 625 (938)
Q Consensus 567 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~~l~ 625 (938)
.++++|+++|..... ....+.+.+.+||+ .+.+++++
T Consensus 151 --~~~~ii~~~~~~~~~-------------------~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 --GELRCIGATTVSEYR-------------------QFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp --TCSCEEEEECHHHHH-------------------HHTTTCHHHHHHEE-EEECCSCC
T ss_pred --CCeeEEEecCHHHHH-------------------HHHhccHHHHHhcC-cccCCCCC
Confidence 235688888842210 01136789999996 68888764
No 174
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=99.14 E-value=2.7e-11 Score=127.14 Aligned_cols=116 Identities=16% Similarity=0.203 Sum_probs=89.5
Q ss_pred ccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHHHHHhccccCCcc
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSKL 749 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~~ 749 (938)
..++|+|+++.++.++++.+. ..+.++++||++++|+.+.++++++.++.. +++|+||||.++..+..........
T Consensus 7 ~~isDiHg~~~~l~~~l~~~~---~~d~ii~~GDl~~~g~~~~~~~~~l~~~~~-~~~v~GNhD~~~~~~~~~~~~~~~~ 82 (246)
T 3rqz_A 7 LIISDVHANLVALEAVLSDAG---RVDDIWSLGDIVGYGPRPRECVELVRVLAP-NISVIGNHDWACIGRLSLDEFNPVA 82 (246)
T ss_dssp EEECCCTTCHHHHHHHHHHHC---SCSEEEECSCCSSSSSCHHHHHHHHHHHCS-SEECCCHHHHHHTCCCCCC--CGGG
T ss_pred EEEeecCCCHHHHHHHHHhcc---CCCEEEECCCcCCCCCCHHHHHHHHHhcCC-CEEEeCchHHHHhccCCccccCHHH
Confidence 568999999999999998876 568999999999999999999999988863 6899999999886543321111122
Q ss_pred ccHHHhhCCCCHHHHHHHHhcCCceEEeCCEEEEecccCc
Q psy14500 750 DTFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAK 789 (938)
Q Consensus 750 ~~~~~~~~~~~~~~~~~~l~~lp~~~~~~~~~~vHAg~~p 789 (938)
.....|......++.+.||+++|..+..++++++||+...
T Consensus 83 ~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~i~~~Hg~p~~ 122 (246)
T 3rqz_A 83 RFASYWTTMQLQAEHLQYLESLPNRMIDGDWTVVHGSPRH 122 (246)
T ss_dssp GCHHHHHHHHCCHHHHHHHHHCCSEEEETTEEEESSCSSS
T ss_pred HHHHHHHHHHcCHHHHHHHHhCCcEEEECCEEEEECCcCC
Confidence 2233333333457889999999999999999999998543
No 175
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.11 E-value=2.8e-10 Score=120.77 Aligned_cols=115 Identities=20% Similarity=0.171 Sum_probs=89.1
Q ss_pred ccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHHHHHhcccc-CCc
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININK-KSK 748 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~-~~~ 748 (938)
..++|+|+++.+++++++.+... ..|.++++||++++|+.+.++++++.++. .+.+|+||||.+++.+..+... +..
T Consensus 15 ~~iSDiHg~~~~l~~vl~~~~~~-~~D~ii~~GDlv~~g~~~~~~~~~l~~~~-~~~~v~GNhD~~~~~~~~~~~~~~~~ 92 (270)
T 3qfm_A 15 ALLSDIHGNTTALEAVLADARQL-GVDEYWLLGDILMPGTGRRRILDLLDQLP-ITARVLGNWEDSLWHGVRKELDSTRP 92 (270)
T ss_dssp EEECCCTTCHHHHHHHHHHHHHT-TCCEEEECSCCSSSSSCSHHHHHHHHTSC-EEEECCCHHHHHHHHHHTTCSCTTSH
T ss_pred EEEecCCCCHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCHHHHHHHHHccC-CEEEEcCChHHHHHHhhccccCCCcH
Confidence 56899999999999999988753 56899999999999999999999998774 4789999999999887654211 111
Q ss_pred ----cccHHHhhCCCCHHHHHHHHhcCCceEEe--C--CEEEEecc
Q psy14500 749 ----LDTFDDILDAPDKKKLVSWLRTQPLAIYY--K--KYLMIHAG 786 (938)
Q Consensus 749 ----~~~~~~~~~~~~~~~~~~~l~~lp~~~~~--~--~~~~vHAg 786 (938)
......|......++.++||+++|..+.. + ++++|||.
T Consensus 93 ~~~~~~~~~~~~~~~L~~~~~~~L~~LP~~~~~~~~g~~i~lvHg~ 138 (270)
T 3qfm_A 93 SQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISHHL 138 (270)
T ss_dssp HHHHHHHHHHHHHTTSCHHHHHHHHSCCSEEEEEETTEEEEEESSB
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHhCCCceEEEECCcEEEEEECC
Confidence 01123455555567889999999998753 3 68999954
No 176
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.11 E-value=4.2e-11 Score=141.23 Aligned_cols=160 Identities=15% Similarity=0.131 Sum_probs=96.4
Q ss_pred CCccccHHHHHHHHHHHhcCCC-----------CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCC--cCCCeEEEEehhh
Q psy14500 31 DPVIGRDDEIRRAIQVLQRRSK-----------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--LLSKKILLLDIAL 97 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~~~~~-----------~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~--~~~~~~~~~~~~~ 97 (938)
..++|++.+.+.++..+.+... .|+||+||||||||++|+++|+.+.....+.. .....+.......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~ 374 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVRE 374 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSG
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeec
Confidence 4789999988877766655421 28999999999999999999987632211100 0011111111100
Q ss_pred hhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCc---------------eE
Q psy14500 98 LLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE---------------LH 162 (938)
Q Consensus 98 l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~---------------i~ 162 (938)
.. .|.... ....+..+. +.||||||++.+. .+.++.|++.|+++. +.
T Consensus 375 ~~-----~g~~~~-~~G~l~~A~----~gil~IDEid~l~--------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 375 KG-----TGEYYL-EAGALVLAD----GGIAVIDEIDKMR--------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp GG-----TSSCSE-EECHHHHHS----SSEECCTTTTCCC--------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred cc-----cccccc-cCCeeEecC----CCcEEeehhhhCC--------HhHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 00 111000 001122221 3499999999983 356677888886543 45
Q ss_pred EEEecChhH--HHH------hhhcCHHHHcccce--EEeeCCCHHHHHHHHHhhhhh
Q psy14500 163 CIGATTLNE--YRQ------YIEKDAAFERRFQK--ILVEEPDIEETISILRGLQKK 209 (938)
Q Consensus 163 vI~~tn~~~--~~~------~~~ld~al~~Rf~~--i~~~~p~~~e~~~il~~~~~~ 209 (938)
+|+|||+.. |.. ...+++++++||+. +..+.|+.+ ...|++++...
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 899999863 100 12789999999973 455666666 77777766653
No 177
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.99 E-value=2.3e-09 Score=120.03 Aligned_cols=180 Identities=16% Similarity=0.236 Sum_probs=119.3
Q ss_pred CCCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC------
Q psy14500 30 LDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG------ 101 (938)
Q Consensus 30 ~~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~------ 101 (938)
++.++|.+..++++...+.. ....+|||+|++|||||++|++++...... ..+++.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~-------~~~fv~v~~~~~~~~~~~~el 208 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS-------KEPFVALNVASIPRDIFEAEL 208 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT-------TSCEEEEETTTSCHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC-------CCCeEEEecCCCCHHHHHHHh
Confidence 67899999888888876653 556789999999999999999999876432 457888998654210
Q ss_pred -----ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceEE
Q psy14500 102 -----TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHC 163 (938)
Q Consensus 102 -----~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~v 163 (938)
+.+.|... .....|..+. +.+||||||+.| +.+.+..|+.+++.+ ++++
T Consensus 209 fg~~~g~~tga~~-~~~g~~~~a~----~gtlfldei~~l--------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ri 275 (387)
T 1ny5_A 209 FGYEKGAFTGAVS-SKEGFFELAD----GGTLFLDEIGEL--------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRI 275 (387)
T ss_dssp HCBCTTSSTTCCS-CBCCHHHHTT----TSEEEEESGGGC--------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEE
T ss_pred cCCCCCCCCCccc-ccCCceeeCC----CcEEEEcChhhC--------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 11111111 0122333332 238999999999 346777888888643 5789
Q ss_pred EEecChhHHH--HhhhcCHHHHcccceEEeeCCCH----HHHHHHHHhhhhhhhcccC---CCCCHHHHHHHHHh
Q psy14500 164 IGATTLNEYR--QYIEKDAAFERRFQKILVEEPDI----EETISILRGLQKKYEVHHG---VEITDPAIVAASEL 229 (938)
Q Consensus 164 I~~tn~~~~~--~~~~ld~al~~Rf~~i~~~~p~~----~e~~~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 229 (938)
|+|||.+-.. ..-...+.|..|+..+.+..|+. ++...++++++.++....+ ..++++++..+...
T Consensus 276 i~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~ 350 (387)
T 1ny5_A 276 LAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY 350 (387)
T ss_dssp EEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS
T ss_pred EEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 9999975321 11245677888888666555544 5566677777766544333 34778887766553
No 178
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.98 E-value=5e-09 Score=116.27 Aligned_cols=178 Identities=17% Similarity=0.191 Sum_probs=117.4
Q ss_pred CCccccHHHHHHHHHHHh--cCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC-------
Q psy14500 31 DPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG------- 101 (938)
Q Consensus 31 ~~lvG~~~~~~~l~~~l~--~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~------- 101 (938)
..++|++..+.++...+. .....++|++|++||||+++|++++....+. ..++.++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r~--------~~fv~vnc~~~~~~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGRK--------GAFVDLNCASIPQELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCCC--------SCEEEEESSSSCTTTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhcccc--------CCcEEEEcccCChHHHHHHhc
Confidence 468899888777766554 3556789999999999999999999876332 23888998754311
Q ss_pred ----ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC-------------ceEEE
Q psy14500 102 ----TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCI 164 (938)
Q Consensus 102 ----~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~-------------~i~vI 164 (938)
+.+.|... .-...|..+. + ..||||||+.| +.+.+..|+..++.+ .+++|
T Consensus 201 g~~~g~~tga~~-~~~g~~~~a~--~--gtlfldei~~l--------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 267 (368)
T 3dzd_A 201 GHEKGAFTGALT-RKKGKLELAD--Q--GTLFLDEVGEL--------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVI 267 (368)
T ss_dssp EECSCSSSSCCC-CEECHHHHTT--T--SEEEEETGGGS--------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEE
T ss_pred CccccccCCccc-ccCChHhhcC--C--CeEEecChhhC--------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEE
Confidence 01111110 0112333332 2 38999999999 346788888888654 46799
Q ss_pred EecChhHHHH--hhhcCHHHHcccceEE--eeCCCH--HHHHHHHHhhhhhhhcccC---CCCCHHHHHHHHHh
Q psy14500 165 GATTLNEYRQ--YIEKDAAFERRFQKIL--VEEPDI--EETISILRGLQKKYEVHHG---VEITDPAIVAASEL 229 (938)
Q Consensus 165 ~~tn~~~~~~--~~~ld~al~~Rf~~i~--~~~p~~--~e~~~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 229 (938)
++||.+.... .-...+.|..|+..+. +|++.. ++...++++++.++....+ ..++++++..+..+
T Consensus 268 ~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 341 (368)
T 3dzd_A 268 SATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQ 341 (368)
T ss_dssp EEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTC
T ss_pred EecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 9999764221 1234568888998655 555544 5666777777776654333 45888888877664
No 179
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=98.96 E-value=7.2e-10 Score=127.23 Aligned_cols=99 Identities=23% Similarity=0.241 Sum_probs=73.4
Q ss_pred hccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhh
Q psy14500 426 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 505 (938)
Q Consensus 426 ~~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 505 (938)
.+.++||+++++.+...+.....+. .|..++||+||||||||++|+++|+.+. ...+|+.++++++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~----~~~~~iLl~GppGtGKT~la~ala~~l~-~~~~~~~~~~~~~~~~------ 104 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKK----MAGRAVLLAGPPGTGKTALALAIAQELG-SKVPFCPMVGSEVYST------ 104 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEECCTTSSHHHHHHHHHHHHC-TTSCEEEEEGGGGCCS------
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCC----CCCCeEEEECCCcCCHHHHHHHHHHHhC-CCceEEEEeHHHHHHH------
Confidence 4678999999998888877665443 2334799999999999999999999982 2379999998876532
Q ss_pred cCCCCCCccccccchhHHHHHh------CCCEEEEEccccccCH
Q psy14500 506 IGAPPGYIGYEEGGYLTEIVRR------KPYSLILLDEIEKANS 543 (938)
Q Consensus 506 ~g~~~~~~g~~~~~~l~~~~~~------~~~~vl~lDEid~~~~ 543 (938)
+.|..+. +...++. ..++||||||+|.+.+
T Consensus 105 ------~~~~~~~--~~~~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 105 ------EIKKTEV--LMENFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp ------SSCHHHH--HHHHHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred ------hhhhhHH--HHHHHHHHHhhhhcCCcEEEEechhhccc
Confidence 4444332 4444443 3579999999998764
No 180
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.95 E-value=1.1e-08 Score=113.28 Aligned_cols=185 Identities=16% Similarity=0.242 Sum_probs=115.9
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc---------
Q psy14500 30 LDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA--------- 100 (938)
Q Consensus 30 ~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~--------- 100 (938)
...++|++++++.+...+... +.++|+||+|+|||+|++.+++.. + .+.+++.....
T Consensus 11 ~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~~ 76 (350)
T 2qen_A 11 REDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----------P--GILIDCRELYAERGHITREE 76 (350)
T ss_dssp GGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----------S--EEEEEHHHHHHTTTCBCHHH
T ss_pred hHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----------C--cEEEEeecccccccCCCHHH
Confidence 357899999999999988764 789999999999999999999875 2 44455432210
Q ss_pred --------------------------Cccc---cchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhh
Q psy14500 101 --------------------------GTKY---RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNM 151 (938)
Q Consensus 101 --------------------------~~~~---~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~ 151 (938)
+... .......+ ..+.......++.+|+|||++.+.... ...+.+....
T Consensus 77 ~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~vlvlDe~~~~~~~~-~~~~~~~~~~ 154 (350)
T 2qen_A 77 LIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVF-RELNDLGEELGEFIVAFDEAQYLRFYG-SRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHH-HHHHHHHHHHSCEEEEEETGGGGGGBT-TTTTHHHHHH
T ss_pred HHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHH-HHHHHHHhccCCEEEEEeCHHHHhccC-ccchhhHHHH
Confidence 0000 01122112 222222211238899999999985410 0011234455
Q ss_pred hhhhccC-CceEEEEecChhHH-HHh---hhcCHHHHcccc-eEEeeCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHH
Q psy14500 152 LKPELSR-GELHCIGATTLNEY-RQY---IEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVA 225 (938)
Q Consensus 152 L~~~l~~-~~i~vI~~tn~~~~-~~~---~~ld~al~~Rf~-~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~ 225 (938)
|...++. .++.+|.+++.... ... .....++..|+. .+.+++++.++..+++...... .+..++++.+..
T Consensus 155 L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~----~~~~~~~~~~~~ 230 (350)
T 2qen_A 155 FAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE----VNLDVPENEIEE 230 (350)
T ss_dssp HHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHH
T ss_pred HHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHH
Confidence 5555543 46778877765432 221 122334554654 6999999999999998765443 356678888888
Q ss_pred HHHhhhhcc
Q psy14500 226 ASELSYRYI 234 (938)
Q Consensus 226 ~~~~s~~~~ 234 (938)
+...++|+.
T Consensus 231 i~~~tgG~P 239 (350)
T 2qen_A 231 AVELLDGIP 239 (350)
T ss_dssp HHHHHTTCH
T ss_pred HHHHhCCCH
Confidence 888887754
No 181
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.93 E-value=8.1e-09 Score=114.33 Aligned_cols=232 Identities=16% Similarity=0.098 Sum_probs=128.5
Q ss_pred chhhhhHHHHHhhhHHHHHhcCCCCCccccHHHHHHHHHHHhcCC-----CCCcEEEcCCCChHHHHHHHH-HHHHHcCC
Q psy14500 7 DEEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRS-----KNNPVLIGEPGVGKTAIVEGL-AQRIINGE 80 (938)
Q Consensus 7 ~e~~~~~~~~~~~~l~~~~~~~~~~~lvG~~~~~~~l~~~l~~~~-----~~~vLL~Gp~GtGKT~la~~l-a~~l~~~~ 80 (938)
+++....+.+- ++.++... .+.+++|++.+.+.++-.|.++. ..|+||.|+||| ||++|+++ ++.++
T Consensus 192 d~~~i~~l~~~--~~~~~l~~-sIapI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~p--- 264 (506)
T 3f8t_A 192 ELEEFRELADK--DPLTTFAR-AIAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAP--- 264 (506)
T ss_dssp HHHHHHHHHHS--CHHHHHHH-HHCCSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCS---
T ss_pred HHHHHHHHHHH--HHHHHHHH-HhcccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCC---
Confidence 34444444443 44444333 33349999998777776665542 238999999999 99999999 76541
Q ss_pred CCCCcCCCeEEEEehh----hhhcCccccch--HHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhh
Q psy14500 81 VPNSLLSKKILLLDIA----LLLAGTKYRGE--FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKP 154 (938)
Q Consensus 81 ~p~~~~~~~~~~~~~~----~l~~~~~~~g~--~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~ 154 (938)
...+..... .+... ..+. +.- -...+.-| .+ .++||||++.+. ...+..|++
T Consensus 265 -------R~~ft~g~~ss~~gLt~s--~r~~tG~~~-~~G~l~LA--dg--Gvl~lDEIn~~~--------~~~qsaLlE 322 (506)
T 3f8t_A 265 -------RGVYVDLRRTELTDLTAV--LKEDRGWAL-RAGAAVLA--DG--GILAVDHLEGAP--------EPHRWALME 322 (506)
T ss_dssp -------SEEEEEGGGCCHHHHSEE--EEESSSEEE-EECHHHHT--TT--SEEEEECCTTCC--------HHHHHHHHH
T ss_pred -------CeEEecCCCCCccCceEE--EEcCCCccc-CCCeeEEc--CC--CeeehHhhhhCC--------HHHHHHHHH
Confidence 122221110 11110 0000 000 00111111 12 399999999983 456778888
Q ss_pred hccCC-----------ceEEEEecChhHHH------HhhhcCHHHHcccce--EEeeCCCHHHHH---------HHHHhh
Q psy14500 155 ELSRG-----------ELHCIGATTLNEYR------QYIEKDAAFERRFQK--ILVEEPDIEETI---------SILRGL 206 (938)
Q Consensus 155 ~l~~~-----------~i~vI~~tn~~~~~------~~~~ld~al~~Rf~~--i~~~~p~~~e~~---------~il~~~ 206 (938)
.|+++ .+.+|+|+|+.+.- ....+++++++||+. +.+..|+.+.-. +.++.+
T Consensus 323 aMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~y 402 (506)
T 3f8t_A 323 AMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRY 402 (506)
T ss_dssp HHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHH
T ss_pred HHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHH
Confidence 88755 46799999987510 124899999999985 334555443311 222322
Q ss_pred hhhhh-cccCCCCCHHHHHHHHHhhhhc------------cccCCCchhhhhHHHHHHHHHHHhhc--CchhHHHH
Q psy14500 207 QKKYE-VHHGVEITDPAIVAASELSYRY------------ISDRFMPDKAIDLIDEAAAKIKIEID--SKPEIMDK 267 (938)
Q Consensus 207 ~~~~~-~~~~~~i~~~~l~~~~~~s~~~------------~~~~~~p~~a~~ll~~a~~~~~~~~~--~~p~~l~~ 267 (938)
..... ....+.+++++.+++..+.... ......|+....++.-+-+.++.... -.|+++..
T Consensus 403 i~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~ 478 (506)
T 3f8t_A 403 LLYAIREHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDI 478 (506)
T ss_dssp HHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHhcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHH
Confidence 22221 2346778888887776543211 22345677777787777776666543 35555443
No 182
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.87 E-value=4.4e-09 Score=104.55 Aligned_cols=105 Identities=17% Similarity=0.225 Sum_probs=68.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc-cCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEcc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 537 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDE 537 (938)
+++|+||||||||+++++++..+. ..+..+..+++.++...... .+.. . ....+...+. ...+|+|||
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~--~~~~------~-~~~~~~~~~~--~~~llilDE 108 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKH--LMDE------G-KDTKFLKTVL--NSPVLVLDD 108 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHH--HHHH------T-CCSHHHHHHH--TCSEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH--HhcC------c-hHHHHHHHhc--CCCEEEEeC
Confidence 699999999999999999999885 44556666666655432111 1000 0 0112223333 346999999
Q ss_pred cc--ccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhh
Q psy14500 538 IE--KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 584 (938)
Q Consensus 538 id--~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 584 (938)
++ .+++..++.|+.+++.. ...+..+|+|||...+.+
T Consensus 109 ~~~~~~~~~~~~~l~~ll~~~----------~~~~~~ii~tsn~~~~~~ 147 (180)
T 3ec2_A 109 LGSERLSDWQRELISYIITYR----------YNNLKSTIITTNYSLQRE 147 (180)
T ss_dssp CSSSCCCHHHHHHHHHHHHHH----------HHTTCEEEEECCCCSCC-
T ss_pred CCCCcCCHHHHHHHHHHHHHH----------HHcCCCEEEEcCCChhHh
Confidence 98 57788888888888641 113456889999877653
No 183
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.84 E-value=2.7e-08 Score=110.28 Aligned_cols=181 Identities=15% Similarity=0.196 Sum_probs=110.0
Q ss_pred CCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh-----c----
Q psy14500 30 LDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-----A---- 100 (938)
Q Consensus 30 ~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~-----~---- 100 (938)
.+.++|++++++.|.. +.. +.++|+||+|+|||+|++.+++.+ ....+.+++.... .
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL----------NLPYIYLDLRKFEERNYISYKDF 77 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH----------TCCEEEEEGGGGTTCSCCCHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEEchhhccccCCCHHHH
Confidence 3578999999999999 765 589999999999999999999887 2234445543220 0
Q ss_pred --------------------------Cccccc---h------HHHHHHHHHHHHHhcC-CCeEEEEeCccccccCCCCCC
Q psy14500 101 --------------------------GTKYRG---E------FEDRLKKILKEISNNQ-KDIIIFIDELHTMIGTGKVEG 144 (938)
Q Consensus 101 --------------------------~~~~~g---~------~~~~l~~~~~~a~~~~-~~~iL~iDEid~l~~~~~~~~ 144 (938)
+....+ . ....+..++..+.... ++.+|+|||++.+....
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~---- 153 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR---- 153 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT----
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC----
Confidence 000000 0 0012344444444332 38899999999985421
Q ss_pred ccchhhhhhhhccC-CceEEEEecChhHH-HHh---hhcCHHHHccc-ceEEeeCCCHHHHHHHHHhhhhhhhcccCCCC
Q psy14500 145 SIDAGNMLKPELSR-GELHCIGATTLNEY-RQY---IEKDAAFERRF-QKILVEEPDIEETISILRGLQKKYEVHHGVEI 218 (938)
Q Consensus 145 ~~~~~~~L~~~l~~-~~i~vI~~tn~~~~-~~~---~~ld~al~~Rf-~~i~~~~p~~~e~~~il~~~~~~~~~~~~~~i 218 (938)
+.+....|....+. .++.+|.+++.... ... .....++..|+ ..+.+++++.++..+++...... .+...
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~ 229 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE----ADIDF 229 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH----HTCCC
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH----cCCCC
Confidence 12334445444442 46778887776531 211 12223455566 46999999999999999865543 23333
Q ss_pred CHHHHHHHHHhhhhcc
Q psy14500 219 TDPAIVAASELSYRYI 234 (938)
Q Consensus 219 ~~~~l~~~~~~s~~~~ 234 (938)
++. ..+...++++.
T Consensus 230 ~~~--~~i~~~t~G~P 243 (357)
T 2fna_A 230 KDY--EVVYEKIGGIP 243 (357)
T ss_dssp CCH--HHHHHHHCSCH
T ss_pred CcH--HHHHHHhCCCH
Confidence 332 56666666643
No 184
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.80 E-value=1.8e-08 Score=114.32 Aligned_cols=200 Identities=17% Similarity=0.168 Sum_probs=121.6
Q ss_pred ccccChHHHHHHHHHHH-HhhhcCCCCCCCCceEEEE--eCCCCCcHHHHHHHHHHHhccC------CCceEEecccccc
Q psy14500 427 KRVVGQDEAISAVSNAI-RRSRSGLSDAKRPYGSFMF--LGPTGVGKTELCKTLSACIFNN------EESIIRIDMSEFI 497 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l-~~~~~~~~~~~~~~~~iLl--~GppGtGKT~lA~~la~~l~~~------~~~~~~~~~~~~~ 497 (938)
..++|.+..++.+...+ .....+. .....++++ +||||+|||++++.+++.+... +..++.++|....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~---~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGA---GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSS---CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCC---CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 56889999999998888 6543220 011237888 9999999999999999877431 4567788875543
Q ss_pred chhhh----hhhcCCCCCCcccccc---chhHHHHH-hCCCEEEEEccccccC------HHHHHHHHHhhcCCceecCCC
Q psy14500 498 EKHSI----SRLIGAPPGYIGYEEG---GYLTEIVR-RKPYSLILLDEIEKAN------SDVFNILLQILDDGRLTDNRG 563 (938)
Q Consensus 498 ~~~~~----~~l~g~~~~~~g~~~~---~~l~~~~~-~~~~~vl~lDEid~~~------~~~~~~Ll~~le~g~~~~~~g 563 (938)
..... ...+|......+.... ..+...+. ...+.+|+|||++.+. ...+..|+..+++..
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~------ 172 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIP------ 172 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSC------
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhcc------
Confidence 33211 1222332211121111 12223333 2446799999999874 477777777776411
Q ss_pred ceeec--CCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccC---hHHhhcCCeEEEccCCCHHHHHHHHHHHHH
Q psy14500 564 RTINF--RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFR---PEFINRIDDIIVFRYLNRKNILSIANIQLN 638 (938)
Q Consensus 564 ~~~~~--~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~l~~R~~~~i~f~~l~~e~~~~i~~~~l~ 638 (938)
.+. .++.+|++|+... + ...+. +.+.+++...+.|+|++.+++.+++...+.
T Consensus 173 --~~~~~~~v~lI~~~~~~~--~-------------------~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 173 --SRDGVNRIGFLLVASDVR--A-------------------LSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp --CTTSCCBEEEEEEEEETH--H-------------------HHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred --cCCCCceEEEEEEecccc--H-------------------HHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 001 4567787876422 1 01122 455666655699999999999999766553
Q ss_pred HHHHHHHccCCeEEEcHHHHHHHHhhc
Q psy14500 639 ILKNKLLKMNMDLKISKAALKKISNIG 665 (938)
Q Consensus 639 ~~~~~~~~~~~~l~~~~~~~~~L~~~~ 665 (938)
.. +....++++++..+.+..
T Consensus 230 ~~-------~~~~~~~~~~~~~i~~~~ 249 (412)
T 1w5s_A 230 LG-------LRDTVWEPRHLELISDVY 249 (412)
T ss_dssp HH-------BCTTSCCHHHHHHHHHHH
T ss_pred hc-------CCCCCCChHHHHHHHHHH
Confidence 21 111237788888888754
No 185
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.77 E-value=1.2e-08 Score=103.29 Aligned_cols=103 Identities=21% Similarity=0.255 Sum_probs=66.6
Q ss_pred hHHHHHhcCCCCCccccHH----HHHHHHHHHhcCC----CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEE
Q psy14500 20 DLTEKARLGKLDPVIGRDD----EIRRAIQVLQRRS----KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 91 (938)
Q Consensus 20 ~l~~~~~~~~~~~lvG~~~----~~~~l~~~l~~~~----~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~ 91 (938)
.+...+++.+|+++++.+. .++.+..++.... +.+++|+||||||||++|+++++.+... +..++
T Consensus 14 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~ 86 (202)
T 2w58_A 14 FMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSL 86 (202)
T ss_dssp SSCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEE
T ss_pred CCCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEE
Confidence 4456678899999998553 4555566665442 2789999999999999999999988543 44566
Q ss_pred EEehhhhhcCcc--c-cchHHHHHHHHHHHHHhcCCCeEEEEeCcccc
Q psy14500 92 LLDIALLLAGTK--Y-RGEFEDRLKKILKEISNNQKDIIIFIDELHTM 136 (938)
Q Consensus 92 ~~~~~~l~~~~~--~-~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l 136 (938)
.+++..+..... + .+. +..++..+... .+|||||++..
T Consensus 87 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~---~~lilDei~~~ 127 (202)
T 2w58_A 87 IVYVPELFRELKHSLQDQT----MNEKLDYIKKV---PVLMLDDLGAE 127 (202)
T ss_dssp EEEHHHHHHHHHHC---CC----CHHHHHHHHHS---SEEEEEEECCC
T ss_pred EEEhHHHHHHHHHHhccch----HHHHHHHhcCC---CEEEEcCCCCC
Confidence 677655431100 0 011 12233334332 39999999765
No 186
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.77 E-value=3.1e-08 Score=127.93 Aligned_cols=83 Identities=18% Similarity=0.227 Sum_probs=55.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCC-------CccccccchhHHHHHhCCCE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG-------YIGYEEGGYLTEIVRRKPYS 531 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-------~~g~~~~~~l~~~~~~~~~~ 531 (938)
+++|+||||||||+||.+++......+.....+++.+...... ..-+|.... ..++.-...+...++....+
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~ 1507 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1507 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC
Confidence 7999999999999999999998877788888888877654433 222231110 11111112333445667789
Q ss_pred EEEEccccccC
Q psy14500 532 LILLDEIEKAN 542 (938)
Q Consensus 532 vl~lDEid~~~ 542 (938)
+|||||++.+-
T Consensus 1508 lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1508 VIVVDSVAALT 1518 (2050)
T ss_dssp EEEESCGGGCC
T ss_pred EEEEcChhHhc
Confidence 99999997443
No 187
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.75 E-value=6.6e-09 Score=105.33 Aligned_cols=108 Identities=19% Similarity=0.270 Sum_probs=67.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEcc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 537 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDE 537 (938)
.+++|+||||||||++|+++++.+...+.++..++++++..... ..+.. .....+...+... .+|+|||
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~~~--~~lilDe 123 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK--HSLQD-------QTMNEKLDYIKKV--PVLMLDD 123 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH--HC----------CCCHHHHHHHHHS--SEEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH--HHhcc-------chHHHHHHHhcCC--CEEEEcC
Confidence 37999999999999999999999977777888888876543211 11110 0112233344444 4999999
Q ss_pred cccc--CHHHHHHHH-HhhcCCceecCCCceeecCCeEEEEecCCCchhhhh
Q psy14500 538 IEKA--NSDVFNILL-QILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 586 (938)
Q Consensus 538 id~~--~~~~~~~Ll-~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 586 (938)
++.. .+..+..|+ .+++.. ...+..+|+|||.+...+..
T Consensus 124 i~~~~~~~~~~~~ll~~~l~~~----------~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 124 LGAEAMSSWVRDDVFGPILQYR----------MFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp ECCC---CCGGGTTHHHHHHHH----------HHTTCCEEEEESSCHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHHH----------HhCCCCEEEEcCCCHHHHHH
Confidence 9664 433355344 355431 11234588999988776644
No 188
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.70 E-value=1.6e-08 Score=96.70 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=65.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
.++|+||+|+|||+++++++..+...+...+.++..++... ..+. ...+|+|||+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----------------------~~~~--~~~lLilDE~ 92 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----------------------DAAF--EAEYLAVDQV 92 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----------------------GGGG--GCSEEEEEST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----------------------HHHh--CCCEEEEeCc
Confidence 68999999999999999999988655555677766654421 0111 2369999999
Q ss_pred cccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhh
Q psy14500 539 EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 584 (938)
Q Consensus 539 d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 584 (938)
+.+....+..|+.+++.-. .....++|+|||..+..+
T Consensus 93 ~~~~~~~~~~l~~li~~~~---------~~g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 93 EKLGNEEQALLFSIFNRFR---------NSGKGFLLLGSEYTPQQL 129 (149)
T ss_dssp TCCCSHHHHHHHHHHHHHH---------HHTCCEEEEEESSCTTTS
T ss_pred cccChHHHHHHHHHHHHHH---------HcCCcEEEEECCCCHHHc
Confidence 9998877888988887410 111234777888766544
No 189
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.66 E-value=1.1e-08 Score=101.51 Aligned_cols=131 Identities=15% Similarity=0.179 Sum_probs=74.3
Q ss_pred HHHhcCCCCCccc----cHHHHHHHHHHHhc---CCCCCcEEEcCCCChHHHHHHHHHHHHH-cCCCCCCcCCCeEEEEe
Q psy14500 23 EKARLGKLDPVIG----RDDEIRRAIQVLQR---RSKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPNSLLSKKILLLD 94 (938)
Q Consensus 23 ~~~~~~~~~~lvG----~~~~~~~l~~~l~~---~~~~~vLL~Gp~GtGKT~la~~la~~l~-~~~~p~~~~~~~~~~~~ 94 (938)
++|++.+|+.+++ +..+++.+..++.. ....+++|+|||||||||++++++..+. .. +..++.++
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~-------g~~~~~~~ 74 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK-------GIRGYFFD 74 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHS-------CCCCCEEE
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHc-------CCeEEEEE
Confidence 4678999999986 34555666655543 3356799999999999999999999884 22 23344455
Q ss_pred hhhhhcCccccchHHH-HHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhcc---CCceEEEEecChh
Q psy14500 95 IALLLAGTKYRGEFED-RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLN 170 (938)
Q Consensus 95 ~~~l~~~~~~~g~~~~-~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~i~vI~~tn~~ 170 (938)
...+.... ...... ....++..+. .+.+|+|||++.... +......|..+++ ..+..+|.+||..
T Consensus 75 ~~~~~~~~--~~~~~~~~~~~~~~~~~---~~~llilDE~~~~~~------~~~~~~~l~~ll~~~~~~~~~ii~tsn~~ 143 (180)
T 3ec2_A 75 TKDLIFRL--KHLMDEGKDTKFLKTVL---NSPVLVLDDLGSERL------SDWQRELISYIITYRYNNLKSTIITTNYS 143 (180)
T ss_dssp HHHHHHHH--HHHHHHTCCSHHHHHHH---TCSEEEEETCSSSCC------CHHHHHHHHHHHHHHHHTTCEEEEECCCC
T ss_pred HHHHHHHH--HHHhcCchHHHHHHHhc---CCCEEEEeCCCCCcC------CHHHHHHHHHHHHHHHHcCCCEEEEcCCC
Confidence 54443110 000000 0012223333 245999999985421 1122233333332 2345677777765
Q ss_pred H
Q psy14500 171 E 171 (938)
Q Consensus 171 ~ 171 (938)
.
T Consensus 144 ~ 144 (180)
T 3ec2_A 144 L 144 (180)
T ss_dssp S
T ss_pred h
Confidence 3
No 190
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=98.65 E-value=6.7e-08 Score=98.18 Aligned_cols=70 Identities=20% Similarity=0.346 Sum_probs=56.4
Q ss_pred cccccccccchHHHHHHHHHhcccCCccccccccccCCCCee--------EehhHHHHHhcCCccEEEcCCChHHHHHH
Q psy14500 669 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQ--------SLDTLRMVYSMRNYAKIVLGNHEIHLLDV 739 (938)
Q Consensus 669 ~~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~--------~~~v~~~~~~~~~~~~~v~GNHe~~~l~~ 739 (938)
-..++|+|+.+..+.++++.+... ..+.++++||++++|+. ..++++++.++...+++|+||||..+..+
T Consensus 28 i~~iSD~H~~~~~l~~~l~~~~~~-~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~~~~ 105 (208)
T 1su1_A 28 LMFASDIHGSLPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSEVDQM 105 (208)
T ss_dssp EEEECCCTTBHHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTGGGEEECCCTTCCHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHHhc-CCCEEEECCCccccCcccccccccCHHHHHHHHHhcCCceEEEECCCchHHHHh
Confidence 366899999999999999887643 35899999999999883 46788888877545889999999876544
No 191
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.63 E-value=1.1e-07 Score=104.83 Aligned_cols=175 Identities=9% Similarity=-0.008 Sum_probs=118.7
Q ss_pred HHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH---
Q psy14500 44 IQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS--- 120 (938)
Q Consensus 44 ~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~--- 120 (938)
.+.+.+.-.+..||+||+|+||++.++.+++.+.+.... .+..+.++ . . . .++.++..+.
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~--~----~---~----~~~~l~~~~~~~p 72 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE----EHHTFSID--P----N---T----DWNAIFSLCQAMS 72 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC----EEEEEECC--T----T---C----CHHHHHHHHHHHH
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC----eeEEEEec--C----C---C----CHHHHHHHhcCcC
Confidence 334443455667999999999999999999987532110 11222222 1 1 1 1334444333
Q ss_pred hcCCCeEEEEeCccc-cccCCCCCCccchhhhhhhhccC--CceEEEEecChhH-HHHhhhcCHHHHcccceEEeeCCCH
Q psy14500 121 NNQKDIIIFIDELHT-MIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNE-YRQYIEKDAAFERRFQKILVEEPDI 196 (938)
Q Consensus 121 ~~~~~~iL~iDEid~-l~~~~~~~~~~~~~~~L~~~l~~--~~i~vI~~tn~~~-~~~~~~ld~al~~Rf~~i~~~~p~~ 196 (938)
-.++..|++|||+|. +. .+..+.|+.+++. ..+++|.+++..+ -.+...+.+++.+|+..+.|.+++.
T Consensus 73 lf~~~kvvii~~~~~kl~--------~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~ 144 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPN--------AAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQ 144 (343)
T ss_dssp HCCSCEEEEEECCSSCCC--------TTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCT
T ss_pred CccCCeEEEEECCCCCCC--------hHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCH
Confidence 234467999999998 73 3567778888876 3455555554321 0011246688999999999999999
Q ss_pred HHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhccccCCCchhhhhHHHHHHHH
Q psy14500 197 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 253 (938)
Q Consensus 197 ~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~ 253 (938)
.+....++..+.+ .|+.++++++..++..+++.. +.+...++..+..
T Consensus 145 ~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~gdl------~~~~~elekl~l~ 191 (343)
T 1jr3_D 145 AQLPRWVAARAKQ----LNLELDDAANQVLCYCYEGNL------LALAQALERLSLL 191 (343)
T ss_dssp THHHHHHHHHHHH----TTCEECHHHHHHHHHSSTTCH------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhchHH------HHHHHHHHHHHHh
Confidence 9998888877664 688999999999999998877 7777777776543
No 192
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.59 E-value=3.4e-07 Score=100.92 Aligned_cols=164 Identities=12% Similarity=0.112 Sum_probs=109.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCC-CceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHH----hCCCEE
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNE-ESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSL 532 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~-~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~v 532 (938)
+.+||+||+|+||++.++.+++.+...+ .++..+... +....+.+...+. .+++.|
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~~plf~~~kv 79 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------------------PNTDWNAIFSLCQAMSLFASRQT 79 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------------------TTCCHHHHHHHHHHHHHCCSCEE
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------------------CCCCHHHHHHHhcCcCCccCCeE
Confidence 3799999999999999999999875322 121111111 0111122333222 245689
Q ss_pred EEEccccc-cCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCC-CchhhhhhhcchHHHHHHHHHHHHhhccChH
Q psy14500 533 ILLDEIEK-ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL-GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPE 610 (938)
Q Consensus 533 l~lDEid~-~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 610 (938)
++|||++. ++.+.++.|++++++ +..++++|++++. ....- ...+.+.
T Consensus 80 vii~~~~~kl~~~~~~aLl~~le~-----------p~~~~~~il~~~~~~~~~~-------------------~~k~~~~ 129 (343)
T 1jr3_D 80 LLLLLPENGPNAAINEQLLTLTGL-----------LHDDLLLIVRGNKLSKAQE-------------------NAAWFTA 129 (343)
T ss_dssp EEEECCSSCCCTTHHHHHHHHHTT-----------CBTTEEEEEEESCCCTTTT-------------------TSHHHHH
T ss_pred EEEECCCCCCChHHHHHHHHHHhc-----------CCCCeEEEEEcCCCChhhH-------------------hhHHHHH
Confidence 99999999 999999999999997 5566777776653 21100 1234567
Q ss_pred HhhcCCeEEEccCCCHHHHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHhhcccccccccccccchHHHHHHH
Q psy14500 611 FINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 686 (938)
Q Consensus 611 l~~R~~~~i~f~~l~~e~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~~~~dl~~~~~~l~~~l 686 (938)
+.+|+ .++.|.+++.+++...+...+ +..| +.++++++++|+... -||+......++++.
T Consensus 130 i~sr~-~~~~~~~l~~~~l~~~l~~~~-------~~~g--~~i~~~a~~~l~~~~------~gdl~~~~~elekl~ 189 (343)
T 1jr3_D 130 LANRS-VQVTCQTPEQAQLPRWVAARA-------KQLN--LELDDAANQVLCYCY------EGNLLALAQALERLS 189 (343)
T ss_dssp HTTTC-EEEEECCCCTTHHHHHHHHHH-------HHTT--CEECHHHHHHHHHSS------TTCHHHHHHHHHHHH
T ss_pred HHhCc-eEEEeeCCCHHHHHHHHHHHH-------HHcC--CCCCHHHHHHHHHHh------chHHHHHHHHHHHHH
Confidence 88999 699999999999988855444 4456 789999999998832 245555444455554
No 193
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.54 E-value=6.4e-08 Score=104.61 Aligned_cols=109 Identities=21% Similarity=0.246 Sum_probs=66.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc-cCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 536 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 536 (938)
.+++|+||||||||++|++|++.+. ..+.++..+.++++... +...-. .| . ...+...+... .+||||
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~-----l~~~~~--~~-~-~~~~~~~~~~~--~lLiiD 221 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAID-----VKNAIS--NG-S-VKEEIDAVKNV--PVLILD 221 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHH-----HHCCCC--------CCTTHHHHTS--SEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHH-----HHHHhc--cc-h-HHHHHHHhcCC--CEEEEc
Confidence 4799999999999999999999997 77778888887765432 111100 00 0 11223344444 499999
Q ss_pred cccc--cCHHHHHHHHH-hhcCCceecCCCceeecCCeEEEEecCCCchhhhhh
Q psy14500 537 EIEK--ANSDVFNILLQ-ILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 587 (938)
Q Consensus 537 Eid~--~~~~~~~~Ll~-~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 587 (938)
|++. +++..++.|+. +++.. ...+..+|+|||.+...+...
T Consensus 222 dig~~~~~~~~~~~ll~~ll~~r----------~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 222 DIGAEQATSWVRDEVLQVILQYR----------MLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp TCCC------CTTTTHHHHHHHH----------HHHTCCEEEEESSCHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH----------HHCCCcEEEECCCCHHHHHHH
Confidence 9954 44444443443 55531 012345899999988777553
No 194
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.50 E-value=6.9e-08 Score=104.37 Aligned_cols=104 Identities=14% Similarity=0.277 Sum_probs=63.4
Q ss_pred HHHHHhcCCCCCccccH----HHHHHHHHHHhcC---CCCCcEEEcCCCChHHHHHHHHHHHHH-cCCCCCCcCCCeEEE
Q psy14500 21 LTEKARLGKLDPVIGRD----DEIRRAIQVLQRR---SKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPNSLLSKKILL 92 (938)
Q Consensus 21 l~~~~~~~~~~~lvG~~----~~~~~l~~~l~~~---~~~~vLL~Gp~GtGKT~la~~la~~l~-~~~~p~~~~~~~~~~ 92 (938)
+...+++.+|+++++.. ..+..+..++... ...+++|+||||||||+||.++++.+. .. +..+..
T Consensus 114 l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~ 186 (308)
T 2qgz_A 114 LPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTL 186 (308)
T ss_dssp SCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEE
T ss_pred CCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEE
Confidence 34445678999998643 3455555666543 257899999999999999999999885 43 456666
Q ss_pred EehhhhhcCccc-cchHHHHHHHHHHHHHhcCCCeEEEEeCcccc
Q psy14500 93 LDIALLLAGTKY-RGEFEDRLKKILKEISNNQKDIIIFIDELHTM 136 (938)
Q Consensus 93 ~~~~~l~~~~~~-~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l 136 (938)
+++..+...... ... ..+...+..+... .+|||||++..
T Consensus 187 ~~~~~l~~~l~~~~~~--~~~~~~~~~~~~~---~lLiiDdig~~ 226 (308)
T 2qgz_A 187 LHFPSFAIDVKNAISN--GSVKEEIDAVKNV---PVLILDDIGAE 226 (308)
T ss_dssp EEHHHHHHHHHCCCC------CCTTHHHHTS---SEEEEETCCC-
T ss_pred EEHHHHHHHHHHHhcc--chHHHHHHHhcCC---CEEEEcCCCCC
Confidence 676544321000 000 0112223333322 39999999755
No 195
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.46 E-value=1.8e-07 Score=89.42 Aligned_cols=107 Identities=11% Similarity=0.142 Sum_probs=64.1
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEE
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 130 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~i 130 (938)
....++|+||+|+|||+|+++++..+... +...+.++...+... . .. ..+.+|+|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~-------g~~~~~~~~~~~~~~------------~----~~--~~~~lLil 89 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEA-------GKNAAYIDAASMPLT------------D----AA--FEAEYLAV 89 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTT-------TCCEEEEETTTSCCC------------G----GG--GGCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEcHHHhhHH------------H----HH--hCCCEEEE
Confidence 55679999999999999999999988532 444666665544321 0 01 12459999
Q ss_pred eCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhHHHHhhhcCHHHHcccce
Q psy14500 131 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQK 188 (938)
Q Consensus 131 DEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~ 188 (938)
||++.+.... ...+...+....+++..++|.+++.+.- ..... +.+.+||..
T Consensus 90 DE~~~~~~~~----~~~l~~li~~~~~~g~~~iiits~~~p~-~l~~~-~~L~SRl~~ 141 (149)
T 2kjq_A 90 DQVEKLGNEE----QALLFSIFNRFRNSGKGFLLLGSEYTPQ-QLVIR-EDLRTRMAY 141 (149)
T ss_dssp ESTTCCCSHH----HHHHHHHHHHHHHHTCCEEEEEESSCTT-TSSCC-HHHHHHGGG
T ss_pred eCccccChHH----HHHHHHHHHHHHHcCCcEEEEECCCCHH-Hcccc-HHHHHHHhc
Confidence 9999864321 1223333333445555434455553220 11123 899999963
No 196
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.44 E-value=2.2e-07 Score=91.72 Aligned_cols=121 Identities=12% Similarity=0.128 Sum_probs=70.3
Q ss_pred HHHHHHHHHHhcCC-CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHH
Q psy14500 38 DEIRRAIQVLQRRS-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 116 (938)
Q Consensus 38 ~~~~~l~~~l~~~~-~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~ 116 (938)
.-+..+..++...+ .+++||+||||||||++|.++|+.+ ...++...- ....+ .+
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l----------~g~i~~fan----s~s~f----------~l 98 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI----------QGAVISFVN----STSHF----------WL 98 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH----------TCEECCCCC----SSSCG----------GG
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh----------CCCeeeEEe----ccchh----------hh
Confidence 44566666666533 3469999999999999999999988 222221100 00000 01
Q ss_pred HHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCC---------------ceEEEEecChhHHHHhhhcCHH
Q psy14500 117 KEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAA 181 (938)
Q Consensus 117 ~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~---------------~i~vI~~tn~~~~~~~~~ld~a 181 (938)
..+. + ..|++|||++.-.. ......++..++.. ...+|.|||.+-.. ...-+.
T Consensus 99 ~~l~--~-~kIiiLDEad~~~~-------~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~--~~~~~~ 166 (212)
T 1tue_A 99 EPLT--D-TKVAMLDDATTTCW-------TYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAK--DNRWPY 166 (212)
T ss_dssp GGGT--T-CSSEEEEEECHHHH-------HHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTS--SSSCHH
T ss_pred cccC--C-CCEEEEECCCchhH-------HHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCccc--ccchhh
Confidence 1111 1 23899999984311 12223455554332 24678888874311 133478
Q ss_pred HHcccceEEeeCC
Q psy14500 182 FERRFQKILVEEP 194 (938)
Q Consensus 182 l~~Rf~~i~~~~p 194 (938)
|.+|+..+.|+.|
T Consensus 167 L~SRi~~f~F~~~ 179 (212)
T 1tue_A 167 LESRITVFEFPNA 179 (212)
T ss_dssp HHTSCEEEECCSC
T ss_pred hhhhEEEEEcCCC
Confidence 9999998888865
No 197
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=98.44 E-value=2.6e-07 Score=91.13 Aligned_cols=140 Identities=21% Similarity=0.165 Sum_probs=94.7
Q ss_pred ccccccccc--chHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHHHHHhccccC
Q psy14500 669 IYGARDVHG--CKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKK 746 (938)
Q Consensus 669 ~~~~~dl~~--~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~ 746 (938)
-..++|+|+ ...++.++++.+. ...|.++++||+++. ++++++.++...+++|+||||...
T Consensus 25 i~~iSD~Hg~~~~~~l~~~l~~~~--~~~D~ii~~GD~~~~-----~~~~~l~~~~~~v~~V~GNhD~~~---------- 87 (178)
T 2kkn_A 25 FLLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDL-----DTVILLEKFSKEFYGVHGNMDYPD---------- 87 (178)
T ss_dssp EEEECCCCBTTTTCCCCHHHHHGG--GGCSEEEESSCBSCH-----HHHHHHHHHTSSEEECCCSSSCGG----------
T ss_pred EEEEecccCCCCHHHHHHHHHHHh--cCCCEEEECCCCCCH-----HHHHHHHhcCCCEEEEECCCCcHH----------
Confidence 356899996 5555667776654 356899999999983 688888877545889999999542
Q ss_pred CccccHHHhhCCCCHHHHHHHHhcCCce--EEeC--CEEEEecccCcCCCHHHHHHHhHHHHHHhhhccHHHHHHHhcCC
Q psy14500 747 SKLDTFDDILDAPDKKKLVSWLRTQPLA--IYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNH 822 (938)
Q Consensus 747 ~~~~~~~~~~~~~~~~~~~~~l~~lp~~--~~~~--~~~~vHAg~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 822 (938)
|+..+|.. ++.+ +++++||...|. . + ...+. . ..
T Consensus 88 --------------------~~~~lp~~~~~~~~g~~i~l~HG~~~~~----~---~----~~~~~--------~-~~-- 125 (178)
T 2kkn_A 88 --------------------VKEHLPFSKVLLVEGVTIGMCHGWGAPW----D---L----KDRLL--------K-VF-- 125 (178)
T ss_dssp --------------------GGGTSCSCEEEEETTEEEEECCSCCCHH----H---H----HHHHH--------H-HS--
T ss_pred --------------------HHhhCCcceEEEECCEEEEEECCCCCCC----C---H----HHHHH--------H-Hh--
Confidence 33445544 3333 689999874320 0 0 00000 0 00
Q ss_pred CCCCCCccccccccccchhhHHHhhhcccccccCCCCccccccccCCCCCCCCCCCCcccCCCCcCCCceEEEccCCCcC
Q psy14500 823 NSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTLG 902 (938)
Q Consensus 823 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~vv~GH~~~~~ 902 (938)
. .....++|||+-.+.
T Consensus 126 --------------------------------------------------------------~--~~~d~vi~GHtH~~~ 141 (178)
T 2kkn_A 126 --------------------------------------------------------------N--EKPQVILFGHTHEPE 141 (178)
T ss_dssp --------------------------------------------------------------S--SCCSEEECCSCSSCC
T ss_pred --------------------------------------------------------------c--cCCCEEEECccCCCC
Confidence 0 012479999999887
Q ss_pred cccCCCeEEeccccccCCeEEEEEecCCc
Q psy14500 903 LIMKPNIICLDTGCVWGNKLTALCLEDRS 931 (938)
Q Consensus 903 ~~~~~~~~~lDtG~~~gg~Lta~~l~~~~ 931 (938)
....++.+.|..|++.++....+.+++++
T Consensus 142 ~~~~~~~~~iNpGS~~~~sy~il~~~~~~ 170 (178)
T 2kkn_A 142 DTVKAGVRFLNPGSLAEGSYAVLELDGGE 170 (178)
T ss_dssp EEEETTEEEECCCCTTTTEEEEEEEETTE
T ss_pred eEEeCCEEEEECCCCCCCeEEEEEECCCE
Confidence 76678899999999887888888887664
No 198
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=98.37 E-value=9.4e-07 Score=88.17 Aligned_cols=62 Identities=11% Similarity=0.106 Sum_probs=50.4
Q ss_pred ccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHH
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLL 737 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l 737 (938)
..++|+|+....+.++++.+.. ...|.++++||+++. ++++.+.++...+++|+||||....
T Consensus 29 ~~iSD~Hg~~~~l~~~l~~~~~-~~~D~ii~~GDl~~~-----~~~~~l~~l~~~~~~V~GNhD~~~~ 90 (190)
T 1s3l_A 29 GIMSDTHDHLPNIRKAIEIFND-ENVETVIHCGDFVSL-----FVIKEFENLNANIIATYGNNDGERC 90 (190)
T ss_dssp EEECCCTTCHHHHHHHHHHHHH-SCCSEEEECSCCCST-----HHHHHGGGCSSEEEEECCTTCCCHH
T ss_pred EEEeeCCCCHHHHHHHHHHHhh-cCCCEEEECCCCCCH-----HHHHHHHhcCCCEEEEeCCCcchHH
Confidence 5689999999999999987763 356899999999974 5788887665468899999997664
No 199
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.36 E-value=7.3e-07 Score=89.31 Aligned_cols=131 Identities=14% Similarity=0.104 Sum_probs=72.5
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCC-CeEEEEehhhhhcCcc-----------ccch--HHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLS-KKILLLDIALLLAGTK-----------YRGE--FEDRLKKILKEI 119 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~-~~~~~~~~~~l~~~~~-----------~~g~--~~~~l~~~~~~a 119 (938)
-.|++|+||+|||++|..++.....-+ +. -.+ .+++..++.++..+.. ...+ ....+...+..+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~-~~-~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFK-PD-ENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGS-CC-TTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhc-cc-ccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 468999999999999987654431000 00 113 4555555544432110 0000 001122221101
Q ss_pred HhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhc---cCCceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCC
Q psy14500 120 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL---SRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPD 195 (938)
Q Consensus 120 ~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l---~~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~ 195 (938)
.+.++||+|||++.+.+.+... .+... ++..+ ....+.+|.+|+++. .++.++++|+.. +.+..+.
T Consensus 85 --~~~~~vliIDEAq~l~~~~~~~--~e~~r-ll~~l~~~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 --ENIGSIVIVDEAQDVWPARSAG--SKIPE-NVQWLNTHRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp --GGTTCEEEETTGGGTSBCCCTT--CCCCH-HHHGGGGTTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEECS
T ss_pred --ccCceEEEEEChhhhccCcccc--chhHH-HHHHHHhcCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcCcc
Confidence 2336699999999997654211 11111 22223 234567888888876 899999999986 7787764
Q ss_pred H
Q psy14500 196 I 196 (938)
Q Consensus 196 ~ 196 (938)
.
T Consensus 155 ~ 155 (199)
T 2r2a_A 155 M 155 (199)
T ss_dssp S
T ss_pred c
Confidence 3
No 200
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.32 E-value=1.5e-06 Score=90.02 Aligned_cols=133 Identities=11% Similarity=0.185 Sum_probs=76.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCC-EEEEEc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPY-SLILLD 536 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~-~vl~lD 536 (938)
..++|+||||||||++|.+||+.+. . .-.++.+ +.. + .+..... .|++.|
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~---l-~G~vn~~---~~~-----------f-----------~l~~~~~k~i~l~E 155 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP---F-YGCVNWT---NEN-----------F-----------PFNDCVDKMVIWWE 155 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS---C-EEECCTT---CSS-----------C-----------TTGGGSSCSEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc---c-cceeecc---ccc-----------c-----------ccccccccEEEEec
Confidence 3699999999999999999998751 0 1111211 100 0 0111122 255555
Q ss_pred cccccCHHHHHHHHHhhcCCceecC-C-CceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhc
Q psy14500 537 EIEKANSDVFNILLQILDDGRLTDN-R-GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINR 614 (938)
Q Consensus 537 Eid~~~~~~~~~Ll~~le~g~~~~~-~-g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R 614 (938)
|.. +..++++.+-.+++.+.+... . ........+-+|+|||.....+..-... .....+.|.+|
T Consensus 156 e~~-~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~-------------s~~~~~~L~sR 221 (267)
T 1u0j_A 156 EGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNST-------------TFEHQQPLQDR 221 (267)
T ss_dssp SCC-EETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEE-------------ECTTHHHHHTT
T ss_pred ccc-chhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCcc-------------chhhhHHHhhh
Confidence 554 445666777778875444422 1 1123446677899999754321100000 00123568899
Q ss_pred CCeEEEcc--------CCCHHHHHHHHH
Q psy14500 615 IDDIIVFR--------YLNRKNILSIAN 634 (938)
Q Consensus 615 ~~~~i~f~--------~l~~e~~~~i~~ 634 (938)
+ .++.|. +++.++....+.
T Consensus 222 ~-~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 222 M-FKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp E-EEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred E-EEEECCCcCCcccCCCCHHHHHHHHH
Confidence 9 689998 888888888765
No 201
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.32 E-value=7.2e-06 Score=90.28 Aligned_cols=183 Identities=13% Similarity=0.182 Sum_probs=105.8
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc------chh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI------EKH 500 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~------~~~ 500 (938)
..++|.+..++.+...+... ..++++||+|+|||++++.+++.. + .+.+++.... ...
T Consensus 12 ~~~~gR~~el~~L~~~l~~~-----------~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY-----------PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC-----------SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHHHHHTTTCBCHH
T ss_pred HhcCChHHHHHHHHHHHhcC-----------CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeecccccccCCCHH
Confidence 45789999899998888642 269999999999999999999875 2 6677765432 111
Q ss_pred h----hhhhcCC-----------------CCCCccccccchhHHHH----HhCCCEEEEEccccccCH-------HHHHH
Q psy14500 501 S----ISRLIGA-----------------PPGYIGYEEGGYLTEIV----RRKPYSLILLDEIEKANS-------DVFNI 548 (938)
Q Consensus 501 ~----~~~l~g~-----------------~~~~~g~~~~~~l~~~~----~~~~~~vl~lDEid~~~~-------~~~~~ 548 (938)
. +...++. .... .......+...+ ....+.+|+|||++.+.. .....
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEP-RKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCG-GGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeecc-ccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 1 1111111 0000 001111122222 212368999999998764 56666
Q ss_pred HHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHh-hccChHHhhcCCeEEEccCCCHH
Q psy14500 549 LLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVK-IYFRPEFINRIDDIIVFRYLNRK 627 (938)
Q Consensus 549 Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~R~~~~i~f~~l~~e 627 (938)
|...++. ..++.+|+|+..... +. +.+. .....++.+|....+.+.|++.+
T Consensus 155 L~~~~~~------------~~~~~~il~g~~~~~-l~---------------~~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 155 FAYAYDS------------LPNLKIILTGSEVGL-LH---------------DFLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp HHHHHHH------------CTTEEEEEEESSHHH-HH---------------HHHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred HHHHHHh------------cCCeEEEEECCcHHH-HH---------------HHHhhcCCCCccccCccceeeCCCCCHH
Confidence 6666553 135567776653110 00 0000 11233466677668999999999
Q ss_pred HHHHHHHHHHHHHHHHHHccCCeEEEcHHHHHHHHh
Q psy14500 628 NILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 663 (938)
Q Consensus 628 ~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~ 663 (938)
+..+++...+ ...+ ..++++.+..+..
T Consensus 207 e~~~~l~~~~-------~~~~--~~~~~~~~~~i~~ 233 (350)
T 2qen_A 207 TSVEFLKRGF-------REVN--LDVPENEIEEAVE 233 (350)
T ss_dssp HHHHHHHHHH-------HTTT--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHcC--CCCCHHHHHHHHH
Confidence 9998865433 2223 3356666666655
No 202
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.30 E-value=2.7e-06 Score=88.16 Aligned_cols=127 Identities=16% Similarity=0.195 Sum_probs=75.2
Q ss_pred HHHHHhcC-C-CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHH
Q psy14500 43 AIQVLQRR-S-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS 120 (938)
Q Consensus 43 l~~~l~~~-~-~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~ 120 (938)
+..++.+. + .++++|+||||||||++|.++|+.+ .. .-.++-+ .... .+..+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~----------~l-~G~vn~~----~~~f----------~l~~~- 146 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV----------PF-YGCVNWT----NENF----------PFNDC- 146 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS----------SC-EEECCTT----CSSC----------TTGGG-
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh----------cc-cceeecc----cccc----------ccccc-
Confidence 44455443 3 4569999999999999999999875 11 1111111 0110 11111
Q ss_pred hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccC---------------CceEEEEecChhHHH------HhhhcC
Q psy14500 121 NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---------------GELHCIGATTLNEYR------QYIEKD 179 (938)
Q Consensus 121 ~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~---------------~~i~vI~~tn~~~~~------~~~~ld 179 (938)
..+.|++.||.... .++.+.++.+++. ....+|.+||..... ......
T Consensus 147 --~~k~i~l~Ee~~~~---------~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~ 215 (267)
T 1u0j_A 147 --VDKMVIWWEEGKMT---------AKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQ 215 (267)
T ss_dssp --SSCSEEEECSCCEE---------TTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTH
T ss_pred --cccEEEEeccccch---------hHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhh
Confidence 22346777777654 2334455655541 234578888873211 001346
Q ss_pred HHHHcccceEEee--------CCCHHHHHHHHHhh
Q psy14500 180 AAFERRFQKILVE--------EPDIEETISILRGL 206 (938)
Q Consensus 180 ~al~~Rf~~i~~~--------~p~~~e~~~il~~~ 206 (938)
++|.+|+..+.|+ +.+.++....++..
T Consensus 216 ~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w~ 250 (267)
T 1u0j_A 216 QPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRWA 250 (267)
T ss_dssp HHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHHH
T ss_pred HHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHHH
Confidence 8899999999998 67788888877744
No 203
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.22 E-value=7.3e-06 Score=80.91 Aligned_cols=116 Identities=20% Similarity=0.316 Sum_probs=64.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 538 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lDEi 538 (938)
.++|+||||||||++|.+|++.+.+ .++ .+ .+..+. .....+. ...+++|||+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g---~i~--~f---ans~s~-----------------f~l~~l~--~~kIiiLDEa 112 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG---AVI--SF---VNSTSH-----------------FWLEPLT--DTKVAMLDDA 112 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC---EEC--CC---CCSSSC-----------------GGGGGGT--TCSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC---Cee--eE---Eeccch-----------------hhhcccC--CCCEEEEECC
Confidence 6999999999999999999999832 221 11 110000 0000011 1248999999
Q ss_pred cccCHHH-HHHHHHhhcCCcee-cCC-CceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcC
Q psy14500 539 EKANSDV-FNILLQILDDGRLT-DNR-GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI 615 (938)
Q Consensus 539 d~~~~~~-~~~Ll~~le~g~~~-~~~-g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~ 615 (938)
+....+. ...+..+|+...+. |.. -..+.....-+|+|||.....- .--+.+.+|+
T Consensus 113 d~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~---------------------~~~~~L~SRi 171 (212)
T 1tue_A 113 TTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKD---------------------NRWPYLESRI 171 (212)
T ss_dssp CHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSS---------------------SSCHHHHTSC
T ss_pred CchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccc---------------------cchhhhhhhE
Confidence 8543233 34566666643221 111 1112223345789999865421 1125688999
Q ss_pred CeEEEccC
Q psy14500 616 DDIIVFRY 623 (938)
Q Consensus 616 ~~~i~f~~ 623 (938)
..+.|+.
T Consensus 172 -~~f~F~~ 178 (212)
T 1tue_A 172 -TVFEFPN 178 (212)
T ss_dssp -EEEECCS
T ss_pred -EEEEcCC
Confidence 5777773
No 204
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=98.19 E-value=4e-06 Score=86.16 Aligned_cols=67 Identities=15% Similarity=0.216 Sum_probs=48.9
Q ss_pred ccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEe---hhHHHHHhcCCccEEEcCCChHHHH
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSL---DTLRMVYSMRNYAKIVLGNHEIHLL 737 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~---~v~~~~~~~~~~~~~v~GNHe~~~l 737 (938)
..++|+|+....++++++.+... ..|.++++||++++++... ++++.+.++...+++|+||||....
T Consensus 9 ~~iSD~H~~~~~~~~~~~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~ 78 (228)
T 1uf3_A 9 LATSNPMGDLEALEKFVKLAPDT-GADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQDAPIW 78 (228)
T ss_dssp EEEECCTTCHHHHHHHHTHHHHH-TCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTTSCSHH
T ss_pred EEEeeccCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEECCCCCchhH
Confidence 45899999988888888766532 4588999999999985333 3445554443348899999997654
No 205
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.18 E-value=1.3e-05 Score=88.56 Aligned_cols=167 Identities=14% Similarity=0.198 Sum_probs=96.4
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc-----cchhh
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF-----IEKHS 501 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~-----~~~~~ 501 (938)
..++|.+..++.+.. +.. +.++++||+|+|||++++.+++.+ ....+.+++... .+...
T Consensus 13 ~~~~gR~~el~~L~~-l~~------------~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA------------PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS------------SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGGGTTCSCCCHHH
T ss_pred HHhcChHHHHHHHHH-hcC------------CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchhhccccCCCHHH
Confidence 457788888877777 542 269999999999999999999887 335677777653 11110
Q ss_pred h----hh--------------hcCCCCC----Ccc---------ccccchhHHHHHhC--CCEEEEEccccccCH----H
Q psy14500 502 I----SR--------------LIGAPPG----YIG---------YEEGGYLTEIVRRK--PYSLILLDEIEKANS----D 544 (938)
Q Consensus 502 ~----~~--------------l~g~~~~----~~g---------~~~~~~l~~~~~~~--~~~vl~lDEid~~~~----~ 544 (938)
. .. .++.-.+ ..+ ......+...+... .+.+|+|||++.+.. +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 0 00 1111000 000 01112233334332 268999999998753 4
Q ss_pred HHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHh-hccChHHhhcCCeEEEccC
Q psy14500 545 VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVK-IYFRPEFINRIDDIIVFRY 623 (938)
Q Consensus 545 ~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~~l~~R~~~~i~f~~ 623 (938)
+...|...++. ..++.+|+|+.... .+.+ .+. ......+.+|....+.+.|
T Consensus 157 ~~~~l~~~~~~------------~~~~~~i~~g~~~~-~l~~---------------~l~~~~~~~~l~~r~~~~i~l~~ 208 (357)
T 2fna_A 157 LLPALAYAYDN------------LKRIKFIMSGSEMG-LLYD---------------YLRVEDPESPLFGRAFSTVELKP 208 (357)
T ss_dssp CHHHHHHHHHH------------CTTEEEEEEESSHH-HHHH---------------HTTTTCTTSTTTTCCCEEEEECC
T ss_pred HHHHHHHHHHc------------CCCeEEEEEcCchH-HHHH---------------HHhccCCCCccccCccceeecCC
Confidence 55555555542 12456777766311 0000 000 1122346667767899999
Q ss_pred CCHHHHHHHHHHHH
Q psy14500 624 LNRKNILSIANIQL 637 (938)
Q Consensus 624 l~~e~~~~i~~~~l 637 (938)
++.++..+++...+
T Consensus 209 l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 209 FSREEAIEFLRRGF 222 (357)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999876644
No 206
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=98.10 E-value=2e-06 Score=87.80 Aligned_cols=89 Identities=11% Similarity=0.114 Sum_probs=57.4
Q ss_pred ccccccccchHH--HHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHHHHHhccccCC
Q psy14500 670 YGARDVHGCKKS--LSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKS 747 (938)
Q Consensus 670 ~~~~dl~~~~~~--l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~~ 747 (938)
..++|+|+.... +.+.+..+-.....|.++++||+++ .++++++.++...+++|+||||.....+ .
T Consensus 29 ~~iSD~H~~~~~~~l~~~l~~~~~~~~~D~vi~~GDl~~-----~~~l~~l~~~~~~v~~V~GNHD~~~~~~----~--- 96 (215)
T 2a22_A 29 LLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCS-----QEYVEMLKNITKNVYIVSGDLDSAIFNP----D--- 96 (215)
T ss_dssp EEECCCCTTTTCSSCCGGGHHHHHCTTCCEEEECSCCCC-----HHHHHHHHHHCSCEEECCCTTCCSCCBC----C---
T ss_pred EEEecCCCCCChHHHHHHHHHHHhcCCCCEEEECCCCCC-----HHHHHHHHHcCCCEEEecCCCcCccccc----C---
Confidence 557899975321 2222222111345689999999997 4688888877656889999999655321 0
Q ss_pred ccccHHHhhCCCCHHHHHHHHhcCCceEE--eC--CEEEEeccc
Q psy14500 748 KLDTFDDILDAPDKKKLVSWLRTQPLAIY--YK--KYLMIHAGV 787 (938)
Q Consensus 748 ~~~~~~~~~~~~~~~~~~~~l~~lp~~~~--~~--~~~~vHAg~ 787 (938)
..|+..+|.... .+ +++++||..
T Consensus 97 -----------------~~~~~~lp~~~~~~~~~~~i~l~Hg~~ 123 (215)
T 2a22_A 97 -----------------PESNGVFPEYVVVQIGEFKIGLMHGNQ 123 (215)
T ss_dssp -----------------GGGTBCCCSEEEEEETTEEEEEECSTT
T ss_pred -----------------hhhHhhCCceEEEecCCeEEEEEcCCc
Confidence 036677886543 33 699999864
No 207
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.08 E-value=8.4e-06 Score=80.23 Aligned_cols=23 Identities=43% Similarity=0.907 Sum_probs=21.2
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.+.|+||+|+|||||++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 208
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.07 E-value=7.9e-06 Score=93.64 Aligned_cols=61 Identities=13% Similarity=0.335 Sum_probs=43.7
Q ss_pred hhhHHHHHhcCCCCCcc-ccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcC
Q psy14500 18 TIDLTEKARLGKLDPVI-GRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIING 79 (938)
Q Consensus 18 ~~~l~~~~~~~~~~~lv-G~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~ 79 (938)
..+|.++|+|.+|+++- +|..++..++..+.... ++++|.|+||||||+++.+++..+...
T Consensus 11 ~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 11 SSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp ----------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred cCCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 46899999999999997 78888888888877654 489999999999999999999888654
No 209
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.99 E-value=7.8e-05 Score=88.48 Aligned_cols=174 Identities=11% Similarity=0.079 Sum_probs=95.4
Q ss_pred cCCCCCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHH--cCCCCCCcCCCeEEEEehhhh----
Q psy14500 27 LGKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRII--NGEVPNSLLSKKILLLDIALL---- 98 (938)
Q Consensus 27 ~~~~~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~--~~~~p~~~~~~~~~~~~~~~l---- 98 (938)
|.....+||+++.+++|...+.. ...+-++|+||+|+|||+||..+++... .... ...++.++++..
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-----~~~v~wv~~~~~~~~~ 194 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF-----PGGVHWVSVGKQDKSG 194 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHC-----TTCEEEEEEESCCHHH
T ss_pred CCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhC-----CCceEEEECCCCchHH
Confidence 66677899999999999999874 3345689999999999999998875321 1100 112333332111
Q ss_pred -h----------cC-----ccccchHHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceE
Q psy14500 99 -L----------AG-----TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELH 162 (938)
Q Consensus 99 -~----------~~-----~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~ 162 (938)
. .. .......+.....+...+....++++|+||+++.. .. +. .+ .....
T Consensus 195 ~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------~~---l~-~l-~~~~~ 259 (591)
T 1z6t_A 195 LLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------WV---LK-AF-DSQCQ 259 (591)
T ss_dssp HHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------HH---HH-TT-CSSCE
T ss_pred HHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------HH---HH-Hh-cCCCe
Confidence 0 00 00011122222222233333335889999999753 11 22 22 23456
Q ss_pred EEEecChhHHHHhhhcCHHHHcccceEEe---eCCCHHHHHHHHHhhhhhhhcccCCCCCHHHHHHHHHhhhhc
Q psy14500 163 CIGATTLNEYRQYIEKDAAFERRFQKILV---EEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 233 (938)
Q Consensus 163 vI~~tn~~~~~~~~~ld~al~~Rf~~i~~---~~p~~~e~~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 233 (938)
+|.||...... ..+.. ..+.+ ..++.++..+++...... ...-.++....++..+++.
T Consensus 260 ilvTsR~~~~~------~~~~~--~~~~v~~l~~L~~~ea~~L~~~~~~~-----~~~~~~~~~~~i~~~~~G~ 320 (591)
T 1z6t_A 260 ILLTTRDKSVT------DSVMG--PKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQAHSIIKECKGS 320 (591)
T ss_dssp EEEEESCGGGG------TTCCS--CEEEEECCSSCCHHHHHHHHHHHHTS-----CGGGSCTHHHHHHHHHTTC
T ss_pred EEEECCCcHHH------HhcCC--CceEeecCCCCCHHHHHHHHHHHhCC-----CcccccHHHHHHHHHhCCC
Confidence 66676655311 01111 12444 478999999998765532 1111134566777777664
No 210
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=97.98 E-value=1.3e-05 Score=78.87 Aligned_cols=55 Identities=16% Similarity=0.129 Sum_probs=41.9
Q ss_pred ccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHH
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIH 735 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~ 735 (938)
..++|+|+...+++++++.+.. ..|.++++||+. .++++.+. ..+++|+||||..
T Consensus 10 ~~isD~H~~~~~~~~~~~~~~~--~~d~i~~~GD~~------~~~l~~l~---~~~~~v~GNhD~~ 64 (176)
T 3ck2_A 10 IVMSDSHGDSLIVEEVRDRYVG--KVDAVFHNGDSE------LRPDSPLW---EGIRVVKGNMDFY 64 (176)
T ss_dssp EEECCCTTCHHHHHHHHHHHTT--TSSEEEECSCCC------SCTTCGGG---TTEEECCCTTCCS
T ss_pred EEEecCCCCHHHHHHHHHHhhc--CCCEEEECCCCc------hHHHHhhh---CCeEEecCcccch
Confidence 5689999999999999987763 568999999973 13444333 2588999999965
No 211
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=97.97 E-value=4.3e-06 Score=88.06 Aligned_cols=68 Identities=12% Similarity=0.127 Sum_probs=48.6
Q ss_pred ccccccccchHHHHHHHHHhcccCCccccccccccCCCCeeE-----------------------------ehhHHHHHh
Q psy14500 670 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQS-----------------------------LDTLRMVYS 720 (938)
Q Consensus 670 ~~~~dl~~~~~~l~~~l~~~~~~~~~~~li~~GD~~drg~~~-----------------------------~~v~~~~~~ 720 (938)
..++|+|+....+.++++.+.. ...|.++++||++++++.+ ..+++.+.+
T Consensus 9 ~~iSDlH~~~~~~~~~l~~~~~-~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~~ 87 (260)
T 2yvt_A 9 LAIKNFKERFDLLPKLKGVIAE-KQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFREIGE 87 (260)
T ss_dssp EEEECCTTCGGGHHHHHHHHHH-HCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred EEEeecCCChHHHHHHHHHHHh-cCCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHHHHh
Confidence 4579999998888888877753 3458999999999999752 123333332
Q ss_pred cCCccEEEcCCChHHHHH
Q psy14500 721 MRNYAKIVLGNHEIHLLD 738 (938)
Q Consensus 721 ~~~~~~~v~GNHe~~~l~ 738 (938)
....+++|+||||.....
T Consensus 88 ~~~pv~~v~GNHD~~~~~ 105 (260)
T 2yvt_A 88 LGVKTFVVPGKNDAPLKI 105 (260)
T ss_dssp TCSEEEEECCTTSCCHHH
T ss_pred cCCcEEEEcCCCCchhhh
Confidence 233478999999976543
No 212
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.95 E-value=5.7e-06 Score=87.84 Aligned_cols=105 Identities=20% Similarity=0.300 Sum_probs=58.0
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEEEeC
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDE 132 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDE 132 (938)
+.++|+||||||||+||..++... .. .+.++......... .+..+.+..+..+...+.+.+ +||||+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-G~-------~VlyIs~~~eE~v~--~~~~~le~~l~~i~~~l~~~~---LLVIDs 190 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-GG-------KDKYATVRFGEPLS--GYNTDFNVFVDDIARAMLQHR---VIVIDS 190 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-HT-------TSCCEEEEBSCSST--TCBCCHHHHHHHHHHHHHHCS---EEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-CC-------CEEEEEecchhhhh--hhhcCHHHHHHHHHHHHhhCC---EEEEec
Confidence 446999999999999999999862 11 22334331121111 112345555666666665433 999999
Q ss_pred ccccccCCCC---CC--ccc---hhhhhhhhccCCceEEEEecChh
Q psy14500 133 LHTMIGTGKV---EG--SID---AGNMLKPELSRGELHCIGATTLN 170 (938)
Q Consensus 133 id~l~~~~~~---~~--~~~---~~~~L~~~l~~~~i~vI~~tn~~ 170 (938)
++.+...... .+ .+. ....|...+...++.+|+++|+.
T Consensus 191 I~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~ 236 (331)
T 2vhj_A 191 LKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236 (331)
T ss_dssp CTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCS
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCc
Confidence 9998653321 01 111 12223333344567788888854
No 213
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=97.92 E-value=1.7e-05 Score=79.18 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=41.1
Q ss_pred ccccccccchH--HHHHHHHHhcccCCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHH
Q psy14500 670 YGARDVHGCKK--SLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHL 736 (938)
Q Consensus 670 ~~~~dl~~~~~--~l~~~l~~~~~~~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~ 736 (938)
..++|+|+... .+.+.+..+-.....|.++++||+++ .++++++.++...+++|+||||...
T Consensus 14 ~~iSD~H~~~~~~~~~~~l~~~~~~~~~d~ii~~GDl~~-----~~~~~~l~~~~~~~~~v~GNhD~~~ 77 (192)
T 1z2w_A 14 LVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCT-----KESYDYLKTLAGDVHIVRGDFDENL 77 (192)
T ss_dssp EEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBS-----HHHHHHHHHHCSEEEECCCTTCCCT
T ss_pred EEEecCCCCccchhHHHHHHHHhccCCCCEEEEcCCCCC-----HHHHHHHHhcCCCEEEEcCCcCccc
Confidence 45789997421 12222222211245689999999996 4678888777555889999999654
No 214
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.90 E-value=2.4e-05 Score=78.22 Aligned_cols=130 Identities=13% Similarity=0.082 Sum_probs=72.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc-----cCC-CceEEeccccccchhhhhhhcCCC---CCCcccc-ccchhHHHH--H
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIF-----NNE-ESIIRIDMSEFIEKHSISRLIGAP---PGYIGYE-EGGYLTEIV--R 526 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~-----~~~-~~~~~~~~~~~~~~~~~~~l~g~~---~~~~g~~-~~~~l~~~~--~ 526 (938)
..|++|+||+|||++|..++.... ..+ .++...++.++...... ..... ....+.. ....+...+ .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~--~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTY--IETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEE--EECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccc--cchhhhhccccCcccccHHHHHHHhhcc
Confidence 588999999999999988765542 334 66666676655432110 00000 0001111 012233332 3
Q ss_pred hCCCEEEEEcccccc--CH-HHH--HHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHH
Q psy14500 527 RKPYSLILLDEIEKA--NS-DVF--NILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMN 601 (938)
Q Consensus 527 ~~~~~vl~lDEid~~--~~-~~~--~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~ 601 (938)
...++||+|||++.+ +. ... ..++..++..+ ....-+|++|+..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r----------~~~~~iil~tq~~--------------------- 133 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR----------HQGIDIFVLTQGP--------------------- 133 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT----------TTTCEEEEEESCG---------------------
T ss_pred ccCceEEEEEChhhhccCccccchhHHHHHHHHhcC----------cCCeEEEEECCCH---------------------
Confidence 444789999999987 22 111 13555555321 1233456666652
Q ss_pred HHhhccChHHhhcCCeEEEccCC
Q psy14500 602 EVKIYFRPEFINRIDDIIVFRYL 624 (938)
Q Consensus 602 ~l~~~~~~~l~~R~~~~i~f~~l 624 (938)
..+...+.+|++..+.+.+.
T Consensus 134 ---~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 134 ---KLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp ---GGBCHHHHTTEEEEEEEEEC
T ss_pred ---HHHhHHHHHHhheEEEEcCc
Confidence 23667789999888888773
No 215
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.73 E-value=4.7e-05 Score=75.31 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=50.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc--cccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS--EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 536 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 536 (938)
.++++||+|+|||+++..++..+...+.++..+... .-.....+....|.............+...+. .+..+|+||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviID 83 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFID 83 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEEE
Confidence 578999999999999866665554444444433221 00000000001111100011111111211111 245799999
Q ss_pred cccccCHHHHHHHHHhhcC
Q psy14500 537 EIEKANSDVFNILLQILDD 555 (938)
Q Consensus 537 Eid~~~~~~~~~Ll~~le~ 555 (938)
|++.+++++++.|..+.+.
T Consensus 84 E~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 84 EVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CGGGSCTTHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHHC
Confidence 9999988888888777764
No 216
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.69 E-value=0.00014 Score=71.37 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|.||+|+||||+++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 217
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.66 E-value=0.00028 Score=71.08 Aligned_cols=153 Identities=17% Similarity=0.176 Sum_probs=83.9
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCC---CCC---Ccccccc-chhHHHHHhCC
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA---PPG---YIGYEEG-GYLTEIVRRKP 529 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~---~~~---~~g~~~~-~~l~~~~~~~~ 529 (938)
..++++.|+||||||++|-.+|..+...+..+..+++...........+-|- +.. +.|.... ..+...+.. .
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~-~ 84 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA-A 84 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH-C
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc-C
Confidence 3579999999999999999999998777777777776542222211111121 111 1111111 223333443 4
Q ss_pred CEEEEEccccccC------HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCch-hhhhhhcchHHHHHHHHHHH
Q psy14500 530 YSLILLDEIEKAN------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD-KIKEMEKGDKEIIKLAVMNE 602 (938)
Q Consensus 530 ~~vl~lDEid~~~------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~-~~~~~~~~~~~~~~~~~~~~ 602 (938)
+.++++||+-..+ +..+..+...++.| .=++.|+|.... .+.+. +...-.-.
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg--------------idVitT~Nlqh~esl~d~-------v~~itg~~ 143 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAG--------------IDVYTTVNVQHLESLNDQ-------VRGITGVQ 143 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT--------------CEEEEEEEGGGBGGGHHH-------HHHHHSCC
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCC--------------CCEEEEccccccccHHHH-------HHHHcCCC
Confidence 5799999987542 12333333344432 236788886432 22111 01111112
Q ss_pred HhhccChHHhhcCCeEEEccCCCHHHHHHH
Q psy14500 603 VKIYFRPEFINRIDDIIVFRYLNRKNILSI 632 (938)
Q Consensus 603 l~~~~~~~l~~R~~~~i~f~~l~~e~~~~i 632 (938)
+...++..++.+.|. |.+--++++++.+-
T Consensus 144 v~e~vpd~~~~~a~~-v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 144 VRETLPDWVLQEAFD-LVLIDLPPRELLER 172 (228)
T ss_dssp CCSCBCHHHHHTCSE-EEEBCCCHHHHHHH
T ss_pred cCCcCccHHHhhCCe-EEEecCCHHHHHHH
Confidence 245677888888874 55666667665444
No 218
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.57 E-value=0.00013 Score=77.52 Aligned_cols=70 Identities=14% Similarity=0.233 Sum_probs=41.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccc--cccchhHHHHHhCCCEEEEEc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGY--EEGGYLTEIVRRKPYSLILLD 536 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~--~~~~~l~~~~~~~~~~vl~lD 536 (938)
.++|+||||||||++|..++.. .+....|+.....+..+. +... .....+...+...+ +||||
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~v~~------------~~~~le~~l~~i~~~l~~~~--LLVID 189 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEPLSG------------YNTDFNVFVDDIARAMLQHR--VIVID 189 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCSSTT------------CBCCHHHHHHHHHHHHHHCS--EEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhhhhh------------hhcCHHHHHHHHHHHHhhCC--EEEEe
Confidence 5799999999999999999987 333334555522222110 0000 00112334445544 99999
Q ss_pred cccccCH
Q psy14500 537 EIEKANS 543 (938)
Q Consensus 537 Eid~~~~ 543 (938)
++..+..
T Consensus 190 sI~aL~~ 196 (331)
T 2vhj_A 190 SLKNVIG 196 (331)
T ss_dssp CCTTTC-
T ss_pred ccccccc
Confidence 9987743
No 219
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.55 E-value=0.0006 Score=88.42 Aligned_cols=156 Identities=13% Similarity=0.092 Sum_probs=88.7
Q ss_pred hcCCCCCccccHHHHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHH--cCCCCCCcCCCeEEEEehhhhh--
Q psy14500 26 RLGKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRII--NGEVPNSLLSKKILLLDIALLL-- 99 (938)
Q Consensus 26 ~~~~~~~lvG~~~~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~--~~~~p~~~~~~~~~~~~~~~l~-- 99 (938)
.|.....+||+++.+++|...|.. ....-+.|+|++|+|||+||+.+++... ... +...++.++.+...
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~~ 193 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGC-----FSGGVHWVSIGKQDKS 193 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTT-----STTCEEEEECCSCCHH
T ss_pred CCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhh-----CCCeEEEEEECCcCch
Confidence 455667899999999999999853 3334578999999999999998876531 111 12234444432210
Q ss_pred -------------cC-c---cccchHHHHHHHHHHHHH-hcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCce
Q psy14500 100 -------------AG-T---KYRGEFEDRLKKILKEIS-NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGEL 161 (938)
Q Consensus 100 -------------~~-~---~~~g~~~~~l~~~~~~a~-~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i 161 (938)
.. . .........+...+.... ...++.+|+||+++.. .. +.. + ....
T Consensus 194 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------~~---~~~-~-~~~~ 258 (1249)
T 3sfz_A 194 GLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------WV---LKA-F-DNQC 258 (1249)
T ss_dssp HHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------HH---HTT-T-CSSC
T ss_pred HHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------HH---HHh-h-cCCC
Confidence 00 0 000111112333333222 2234789999999854 11 222 2 2345
Q ss_pred EEEEecChhHHHHhhhcCHHHHcccceEEeeC-CCHHHHHHHHHhhh
Q psy14500 162 HCIGATTLNEYRQYIEKDAAFERRFQKILVEE-PDIEETISILRGLQ 207 (938)
Q Consensus 162 ~vI~~tn~~~~~~~~~ld~al~~Rf~~i~~~~-p~~~e~~~il~~~~ 207 (938)
.+|.||.... +-..+...-..+.++. ++.++-.+++....
T Consensus 259 ~ilvTtR~~~------~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~ 299 (1249)
T 3sfz_A 259 QILLTTRDKS------VTDSVMGPKHVVPVESGLGREKGLEILSLFV 299 (1249)
T ss_dssp EEEEEESSTT------TTTTCCSCBCCEECCSSCCHHHHHHHHHHHH
T ss_pred EEEEEcCCHH------HHHhhcCCceEEEecCCCCHHHHHHHHHHhh
Confidence 6777776553 1111111223477886 89999988887655
No 220
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=97.53 E-value=0.00029 Score=70.37 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=37.1
Q ss_pred CCccccccccccCCCCeeEehhHHHHHhcCCccEEEcCCChHHHH
Q psy14500 693 SPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLL 737 (938)
Q Consensus 693 ~~~~~li~~GD~~drg~~~~~v~~~~~~~~~~~~~v~GNHe~~~l 737 (938)
...|.++++||++++|+....+++++.++...+++|+||||....
T Consensus 42 ~~~D~vi~~GDl~~~~~~~~~~~~~l~~l~~~~~~v~GNhD~~~~ 86 (195)
T 1xm7_A 42 KPEDTLYHLGDFTWHFNDKNEYLRIWKALPGRKILVMGNHDKDKE 86 (195)
T ss_dssp CTTCEEEECSCCBSCSCCTTSHHHHHHHSSSEEEEECCTTCCCHH
T ss_pred CCCCEEEECCCCCCCchhHHHHHHHHHHCCCCEEEEeCCCCCchh
Confidence 356899999999999877777888888876568899999997653
No 221
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.53 E-value=9.9e-05 Score=94.89 Aligned_cols=78 Identities=14% Similarity=0.074 Sum_probs=54.2
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh----hhc------Cccccch----HHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL----LLA------GTKYRGE----FEDRLKKILKEI 119 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~----l~~------~~~~~g~----~~~~l~~~~~~a 119 (938)
.+|+|||||||||+||++++.+..... .+...++... +.. -.++.++ .++.++.++..+
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g-------~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~a 1156 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREG-------KTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA 1156 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTT-------CCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcC-------CceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHH
Confidence 389999999999999999998764432 2222233322 110 0344555 788887777666
Q ss_pred HhcCCCeEEEEeCccccccC
Q psy14500 120 SNNQKDIIIFIDELHTMIGT 139 (938)
Q Consensus 120 ~~~~~~~iL~iDEid~l~~~ 139 (938)
+ ...++++|+|+++.|++.
T Consensus 1157 r-~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1157 R-SGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp H-HTCCSEEEESCGGGCCCH
T ss_pred H-hcCCeEEEeCchHhcCcc
Confidence 5 455899999999999987
No 222
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.51 E-value=0.00027 Score=71.70 Aligned_cols=97 Identities=11% Similarity=0.042 Sum_probs=56.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc-chhhhhhhcCCCCCCccccccchhHHHHHh----CCCEE
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI-EKHSISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSL 532 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~-~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~v 532 (938)
..++++||+|+|||+++..++..+...+..+..+....-. ....+..-+|.............+...+.. ....+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 3688999999999999988888776666666666432211 111111112321111111112234444443 34689
Q ss_pred EEEccccccCHHHHHHHHHhhc
Q psy14500 533 ILLDEIEKANSDVFNILLQILD 554 (938)
Q Consensus 533 l~lDEid~~~~~~~~~Ll~~le 554 (938)
|+|||+.-++.++...+..+.+
T Consensus 93 ViIDEaQ~l~~~~ve~l~~L~~ 114 (223)
T 2b8t_A 93 IGIDEVQFFDDRICEVANILAE 114 (223)
T ss_dssp EEECSGGGSCTHHHHHHHHHHH
T ss_pred EEEecCccCcHHHHHHHHHHHh
Confidence 9999999998887776655443
No 223
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.36 E-value=0.00011 Score=72.55 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=19.5
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
-.+++||+|+||||++..++..+.
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~ 28 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYK 28 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999977766653
No 224
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.35 E-value=0.00017 Score=92.74 Aligned_cols=84 Identities=18% Similarity=0.224 Sum_probs=56.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCC-Cccc----cc--cchhHHHHHhCCCE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG-YIGY----EE--GGYLTEIVRRKPYS 531 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~g~----~~--~~~l~~~~~~~~~~ 531 (938)
.+|++||||||||++|++++...-..+.+.+.+++.+..++.- ..-||-... +++. .+ .+.+...++....+
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~-~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~ 1162 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1162 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHH-HHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCe
Confidence 6999999999999999999987755577888888776553321 123332211 3333 11 13344445677889
Q ss_pred EEEEccccccCH
Q psy14500 532 LILLDEIEKANS 543 (938)
Q Consensus 532 vl~lDEid~~~~ 543 (938)
++|+|+++.+.|
T Consensus 1163 ~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1163 VIVVDSVAALTP 1174 (1706)
T ss_dssp EEEESCGGGCCC
T ss_pred EEEeCchHhcCc
Confidence 999999986544
No 225
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.34 E-value=0.00096 Score=78.11 Aligned_cols=150 Identities=17% Similarity=0.160 Sum_probs=82.8
Q ss_pred cccHHHHHHHHHHHhcC---CCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh-----------
Q psy14500 34 IGRDDEIRRAIQVLQRR---SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL----------- 99 (938)
Q Consensus 34 vG~~~~~~~l~~~l~~~---~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~----------- 99 (938)
+|+++.++++...|... ...-|.|+|++|+||||||+.+++... ...... ++. .+.++.+...
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~-~~~~~~-F~~-~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSD-QLIGIN-YDS-IVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCS-STBTTT-BSE-EEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhh-HHHhcc-CCc-EEEEEECCCCCCCHHHHHHHH
Confidence 59999999999988654 345578999999999999999996210 000111 122 2233432210
Q ss_pred ----cCc----cc--cch-HHHHHHHHHHHHHhcCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecC
Q psy14500 100 ----AGT----KY--RGE-FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATT 168 (938)
Q Consensus 100 ----~~~----~~--~g~-~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn 168 (938)
... .. ..+ ....+...+.......++++|+||+++... .. .+.. ..+..+|.||.
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~---------~~--~~~~---~~gs~ilvTTR 273 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEE---------TI--RWAQ---ELRLRCLVTTR 273 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHH---------HH--HHHH---HTTCEEEEEES
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCch---------hh--cccc---cCCCEEEEEcC
Confidence 000 00 000 011233333333322237899999998641 11 1111 14556777776
Q ss_pred hhHHHHhhhcCHHHHcccceEEeeCCCHHHHHHHHHhh
Q psy14500 169 LNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL 206 (938)
Q Consensus 169 ~~~~~~~~~ld~al~~Rf~~i~~~~p~~~e~~~il~~~ 206 (938)
..... ..+..--..+.++.++.++-.+++...
T Consensus 274 ~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 274 DVEIS------NAASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp BGGGG------GGCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred CHHHH------HHcCCCCeEEECCCCCHHHHHHHHHHH
Confidence 55311 111001124889999999999998765
No 226
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.28 E-value=0.00053 Score=78.38 Aligned_cols=112 Identities=24% Similarity=0.379 Sum_probs=64.3
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC-ceEEeccccccch----------
Q psy14500 431 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-SIIRIDMSEFIEK---------- 499 (938)
Q Consensus 431 Gq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~-~~~~~~~~~~~~~---------- 499 (938)
+|..++..+...+.... +++++.|+||||||+++.+++..+...+. .+..+..+.-...
T Consensus 29 ~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~ 98 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEA 98 (459)
T ss_dssp HHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCE
T ss_pred HHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccch
Confidence 56667777777765321 27999999999999999999998865544 3333322211100
Q ss_pred hhhhhhcCCCCCCccccccchh--HHHHHhCCCEEEEEccccccCHHHHHHHHHhhc
Q psy14500 500 HSISRLIGAPPGYIGYEEGGYL--TEIVRRKPYSLILLDEIEKANSDVFNILLQILD 554 (938)
Q Consensus 500 ~~~~~l~g~~~~~~g~~~~~~l--~~~~~~~~~~vl~lDEid~~~~~~~~~Ll~~le 554 (938)
...-.+++..+...+ ....+ ..........+|++||+..+++..+..|+..+.
T Consensus 99 ~T~h~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 99 STIHSILKINPVTYE--ENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp EEHHHHHTEEEEECS--SCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred hhHHHHhccCccccc--ccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc
Confidence 000011111000000 00000 000011235799999999999999999999886
No 227
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.27 E-value=0.0013 Score=79.85 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=36.1
Q ss_pred ccccHHHHHHHHHHHhc-CCCCCcEEEcCCCChHHHHHHHHHH
Q psy14500 33 VIGRDDEIRRAIQVLQR-RSKNNPVLIGEPGVGKTAIVEGLAQ 74 (938)
Q Consensus 33 lvG~~~~~~~l~~~l~~-~~~~~vLL~Gp~GtGKT~la~~la~ 74 (938)
.||+++.+++|...|.. ...+-+.|+|++|+||||||+.+++
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 39999999999998876 3345678999999999999999885
No 228
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.02 E-value=0.00095 Score=73.00 Aligned_cols=96 Identities=21% Similarity=0.291 Sum_probs=52.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccC-CCceEEe-ccccccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEE
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRI-DMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 535 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~-~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 535 (938)
+.++++||+|+||||+.++++..+... +..++.+ +..++........+.-...+.....-...+...++. .+.+|++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~-~Pdvill 202 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALRE-DPDIILV 202 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTS-CCSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhh-CcCEEec
Confidence 479999999999999999999888543 3344433 222221110000000000000000111233344444 4589999
Q ss_pred ccccccCHHHHHHHHHhhcCC
Q psy14500 536 DEIEKANSDVFNILLQILDDG 556 (938)
Q Consensus 536 DEid~~~~~~~~~Ll~~le~g 556 (938)
||+- +++....+++..+.|
T Consensus 203 DEp~--d~e~~~~~~~~~~~G 221 (356)
T 3jvv_A 203 GEMR--DLETIRLALTAAETG 221 (356)
T ss_dssp SCCC--SHHHHHHHHHHHHTT
T ss_pred CCCC--CHHHHHHHHHHHhcC
Confidence 9997 677777777776653
No 229
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.00 E-value=0.0033 Score=72.08 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=51.2
Q ss_pred eEEEEeCccccccCCCCCCccchhhhhhhhcc---CCceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHH
Q psy14500 126 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETIS 201 (938)
Q Consensus 126 ~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~ 201 (938)
.+|+|||++.++... ..++...|..+.. .-.|.+|.+|.++. ...++..+++-|.. |-|...+..+...
T Consensus 345 ivvVIDE~~~L~~~~----~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs---~d~I~~~Iran~~~RI~lrv~s~~Dsr~ 417 (574)
T 2iut_A 345 IVVVVDEFADMMMIV----GKKVEELIARIAQKARAAGIHLILATQRPS---VDVITGLIKANIPTRIAFQVSSKIDSRT 417 (574)
T ss_dssp EEEEESCCTTHHHHT----CHHHHHHHHHHHHHCTTTTEEEEEEESCCC---TTTSCHHHHHTCCEEEEECCSCHHHHHH
T ss_pred EEEEEeCHHHHhhhh----hHHHHHHHHHHHHHHhhCCeEEEEEecCcc---cccccHHHHhhhccEEEEEcCCHHHHHH
Confidence 699999999886532 1233344444443 44788888888764 12578889998985 8899999888888
Q ss_pred HHH
Q psy14500 202 ILR 204 (938)
Q Consensus 202 il~ 204 (938)
|+.
T Consensus 418 ILd 420 (574)
T 2iut_A 418 ILD 420 (574)
T ss_dssp HHS
T ss_pred hcC
Confidence 874
No 230
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.95 E-value=0.0011 Score=65.53 Aligned_cols=95 Identities=14% Similarity=0.146 Sum_probs=52.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc--chhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI--EKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 536 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 536 (938)
..+++||.|+|||+.+-.+++.+...+..+..+...--. ....+..-+|......+......+...+. .+..+|+||
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~-~~~dvViID 88 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE-EDTEVIAID 88 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC-TTCSEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh-ccCCEEEEE
Confidence 578999999999988887777765556666655422111 01111111121100011111112222222 235799999
Q ss_pred cccccCHHHHHHHHHhhc
Q psy14500 537 EIEKANSDVFNILLQILD 554 (938)
Q Consensus 537 Eid~~~~~~~~~Ll~~le 554 (938)
|+.-++++..+.|..+.+
T Consensus 89 Eaqfl~~~~v~~l~~l~~ 106 (191)
T 1xx6_A 89 EVQFFDDEIVEIVNKIAE 106 (191)
T ss_dssp SGGGSCTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHh
Confidence 999998887776655544
No 231
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.90 E-value=0.0097 Score=66.44 Aligned_cols=116 Identities=14% Similarity=0.148 Sum_probs=66.2
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh-----hhhhhcCCCC--CCccccccchhHHH---HH
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH-----SISRLIGAPP--GYIGYEEGGYLTEI---VR 526 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~-----~~~~l~g~~~--~~~g~~~~~~l~~~---~~ 526 (938)
...++|+|++|+||||++..||..+...+..+..+++..+.... ......|.+. ...+.+....+... ++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 35889999999999999999999987777788778877664421 1111112110 01112222222222 23
Q ss_pred hCCCEEEEEccccccC--HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCch
Q psy14500 527 RKPYSLILLDEIEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 582 (938)
Q Consensus 527 ~~~~~vl~lDEid~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~ 582 (938)
...+.++++|.....+ ......|..+..- +....+++++-+..+..
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~----------~~pd~vlLVvDA~~gq~ 227 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNV----------IHPHEVILVIDGTIGQQ 227 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHH----------HCCSEEEEEEEGGGGGG
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHh----------hcCceEEEEEeCCCchh
Confidence 3446899999997765 3344444333221 11234566666655443
No 232
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.89 E-value=0.017 Score=58.13 Aligned_cols=29 Identities=28% Similarity=0.299 Sum_probs=24.5
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHHHcC
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRIING 79 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l~~~ 79 (938)
...++++.|+|||||||++-.+|..+...
T Consensus 5 g~l~I~~~~kgGvGKTt~a~~la~~l~~~ 33 (228)
T 2r8r_A 5 GRLKVFLGAAPGVGKTYAMLQAAHAQLRQ 33 (228)
T ss_dssp CCEEEEEESSTTSSHHHHHHHHHHHHHHT
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 34578999999999999999999887543
No 233
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.83 E-value=0.012 Score=68.67 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=34.6
Q ss_pred cChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHH
Q psy14500 430 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSA 479 (938)
Q Consensus 430 iGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~ 479 (938)
+|.+..++.+...+.... ......+.++|+.|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 588888888888886431 11234788999999999999999996
No 234
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.81 E-value=0.0019 Score=65.53 Aligned_cols=103 Identities=17% Similarity=0.084 Sum_probs=53.3
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh-hhcC---ccccch-H----HHHHHHHHHHHHh--
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL-LLAG---TKYRGE-F----EDRLKKILKEISN-- 121 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~-l~~~---~~~~g~-~----~~~l~~~~~~a~~-- 121 (938)
.-++++||+|+||||++..++.++... +..++.+.... ..+. .+..|- . ......++..+..
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~-------g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~ 85 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYA-------DVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNS 85 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhc-------CCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHh
Confidence 346788999999999998888877443 22233221110 0000 000010 0 0011234444432
Q ss_pred -cCCCeEEEEeCccccccCCCCCCccchhhhhhhhccCCceEEEEecChhH
Q psy14500 122 -NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNE 171 (938)
Q Consensus 122 -~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~~~~i~vI~~tn~~~ 171 (938)
...+.+|+|||++.+. .+..+.+..+... ++.+|.+....+
T Consensus 86 ~~~~~dvViIDEaQ~l~--------~~~ve~l~~L~~~-gi~Vil~Gl~~d 127 (223)
T 2b8t_A 86 FNDETKVIGIDEVQFFD--------DRICEVANILAEN-GFVVIISGLDKN 127 (223)
T ss_dssp SCTTCCEEEECSGGGSC--------THHHHHHHHHHHT-TCEEEEECCSBC
T ss_pred hCCCCCEEEEecCccCc--------HHHHHHHHHHHhC-CCeEEEEecccc
Confidence 2335699999999762 2344444443333 577777776444
No 235
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=96.79 E-value=0.0022 Score=63.04 Aligned_cols=114 Identities=12% Similarity=0.170 Sum_probs=68.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc---cch-hhhhhhcC-----CCCCCcccccc---------c
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF---IEK-HSISRLIG-----APPGYIGYEEG---------G 519 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~---~~~-~~~~~l~g-----~~~~~~g~~~~---------~ 519 (938)
+.+++++++|.|||++|-.+|-...+.+.++..+.+..- ..+ ..+..+ + ...++.-.... .
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHHH
Confidence 359999999999999999999988888888887754331 111 122222 1 01122211100 0
Q ss_pred h---hHHHHHhCCCEEEEEcccc------ccCHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhh
Q psy14500 520 Y---LTEIVRRKPYSLILLDEIE------KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 586 (938)
Q Consensus 520 ~---l~~~~~~~~~~vl~lDEid------~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 586 (938)
. ....+....+.+|+|||+. .++.+ .+++++.+ .+.+.-+|+|+|..+..+.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~-----------Rp~~~~vIlTGr~ap~~l~e 169 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLE---EVISALNA-----------RPGHQTVIITGRGCHRDILD 169 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHT-----------SCTTCEEEEECSSCCHHHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHh-----------CcCCCEEEEECCCCcHHHHH
Confidence 1 1112233567899999994 34433 45666664 45566789999987665433
No 236
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.79 E-value=0.00069 Score=69.42 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.5
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
..++|+||||+|||||++.++..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999996653
No 237
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.74 E-value=0.0062 Score=68.00 Aligned_cols=115 Identities=15% Similarity=0.209 Sum_probs=65.6
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh-----hhhhhcCCCCCCc---cccccchhHHHHHh-
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH-----SISRLIGAPPGYI---GYEEGGYLTEIVRR- 527 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~-----~~~~l~g~~~~~~---g~~~~~~l~~~~~~- 527 (938)
...++|+||+|+||||++..||..+...+..+..+++..+.... ......|.+. +. +.+........+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~-~~~~~~~dp~~i~~~al~~a 175 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQV-YGEPNNQNPIEIAKKGVDIF 175 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCE-ECCTTCSCHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCce-eeccccCCHHHHHHHHHHHH
Confidence 34789999999999999999999887667777777766554321 1112222211 11 11111122233322
Q ss_pred --CCCEEEEEccccccC----HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCch
Q psy14500 528 --KPYSLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 582 (938)
Q Consensus 528 --~~~~vl~lDEid~~~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~ 582 (938)
..+.++++|.....+ +.....+..+... +....+++++.+..+.+
T Consensus 176 ~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~----------~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 176 VKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV----------LKPDDVILVIDASIGQK 226 (433)
T ss_dssp TTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH----------HCCSEEEEEEEGGGGGG
T ss_pred HhcCCCEEEEECCCCccccCCHHHHHHHHHHHHh----------hCCcceEEEEeCccchH
Confidence 346899999998754 4444444444331 12234566666665543
No 238
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.72 E-value=0.0017 Score=65.80 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.9
Q ss_pred CCcEEEcCCCChHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQ 74 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~ 74 (938)
.-++|+||||+||||++..++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3478999999999999999998
No 239
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.72 E-value=0.0031 Score=62.91 Aligned_cols=95 Identities=11% Similarity=0.059 Sum_probs=51.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc--chhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI--EKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 536 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~--~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 536 (938)
-.+++||.|+|||+.+-.++......+..+..+...--. ....+..-+|......+......+...+. .+..+|+||
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~-~~~dvViID 108 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT-EEMDVIAID 108 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC-----------------CCEEECSSGGGGGGGCC-SSCCEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHh-cCCCEEEEE
Confidence 567899999999998888877776666677666532211 11111111132211111111112222122 246799999
Q ss_pred cccccCHHHHHHHHHhhc
Q psy14500 537 EIEKANSDVFNILLQILD 554 (938)
Q Consensus 537 Eid~~~~~~~~~Ll~~le 554 (938)
|+.-++++..+.|..+.+
T Consensus 109 EaQF~~~~~V~~l~~l~~ 126 (214)
T 2j9r_A 109 EVQFFDGDIVEVVQVLAN 126 (214)
T ss_dssp CGGGSCTTHHHHHHHHHH
T ss_pred CcccCCHHHHHHHHHHhh
Confidence 999999888766555444
No 240
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.71 E-value=0.0012 Score=64.65 Aligned_cols=35 Identities=23% Similarity=0.322 Sum_probs=28.3
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL 97 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~ 97 (938)
..|+|+|+||+||||+++.|++.+ +..++.++...
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l----------~~~~~~~~~D~ 38 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL----------PEPWLAFGVDS 38 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS----------SSCEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEeccch
Confidence 468999999999999999999988 55666555543
No 241
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.65 E-value=0.00085 Score=66.14 Aligned_cols=25 Identities=40% Similarity=0.429 Sum_probs=23.4
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+.+|+|+|+|||||||+++.|++.+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 4679999999999999999999998
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.62 E-value=0.0046 Score=63.14 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=27.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 494 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 494 (938)
.++++||||+|||++++.++..+...+.++..++..
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 688999999999999999997664444556555543
No 243
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.62 E-value=0.0025 Score=74.44 Aligned_cols=90 Identities=19% Similarity=0.330 Sum_probs=54.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch----------hhhhhhcCCCCCCccccccchhHHHHHhC
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK----------HSISRLIGAPPGYIGYEEGGYLTEIVRRK 528 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~----------~~~~~l~g~~~~~~g~~~~~~l~~~~~~~ 528 (938)
.++++||||||||+++.+++..+...+.++...-.+.-... ..+.++++..+. +... ..-...
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~--~~~~-----~~~~~~ 278 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQ--GFRH-----NHLEPA 278 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETT--EESC-----SSSSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcc--hhhh-----hhcccc
Confidence 68999999999999999999888665655554322211100 011122221110 0000 000112
Q ss_pred CCEEEEEccccccCHHHHHHHHHhhcC
Q psy14500 529 PYSLILLDEIEKANSDVFNILLQILDD 555 (938)
Q Consensus 529 ~~~vl~lDEid~~~~~~~~~Ll~~le~ 555 (938)
+..+|++||+..++...+..|+..+..
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~~ 305 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVPP 305 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSCT
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCcC
Confidence 457999999999999999988887753
No 244
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.58 E-value=0.0046 Score=67.74 Aligned_cols=127 Identities=12% Similarity=0.077 Sum_probs=66.5
Q ss_pred cccchhhhhHHHHHhhhHHHHHhcCC---CCCcccc-----HHHHHHHHHHHh--c-CCCCCcEEEcCCCChHHHHHHHH
Q psy14500 4 YTLDEEHIGYLKKYTIDLTEKARLGK---LDPVIGR-----DDEIRRAIQVLQ--R-RSKNNPVLIGEPGVGKTAIVEGL 72 (938)
Q Consensus 4 ~~~~e~~~~~~~~~~~~l~~~~~~~~---~~~lvG~-----~~~~~~l~~~l~--~-~~~~~vLL~Gp~GtGKT~la~~l 72 (938)
++..+++.+.|..--..+...+..+. +.+.... .--+..|-..|. . +....++|+||||+|||+||..+
T Consensus 15 ~~~~~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~l 94 (366)
T 1xp8_A 15 PTDAKERSKAIETAMSQIEKAFGKGSIMKLGAESKLDVQVVSTGSLSLDLALGVGGIPRGRITEIYGPESGGKTTLALAI 94 (366)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHCTTSSCCTTSCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCCcceeccccccccCceecCCCHHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHH
Confidence 34456677777777777766654332 2221100 001223333333 1 22345789999999999999998
Q ss_pred HHHHHcCCCCCCcCCCeEEEEehhhhh-------cCcc-------ccchHHHHHHHHHHHHHhcCCCeEEEEeCcccccc
Q psy14500 73 AQRIINGEVPNSLLSKKILLLDIALLL-------AGTK-------YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIG 138 (938)
Q Consensus 73 a~~l~~~~~p~~~~~~~~~~~~~~~l~-------~~~~-------~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~ 138 (938)
+..+... +..+..++..... .+.. .....+ .+...+..+.+..++.+||||.+..+.+
T Consensus 95 a~~~~~~-------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e-~~l~~l~~l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 95 VAQAQKA-------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGE-QALEIMELLVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHH-HHHHHHHHHHTTTCCSEEEEECTTTCCC
T ss_pred HHHHHHC-------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHH-HHHHHHHHHHhcCCCCEEEEeChHHhcc
Confidence 8776432 2334444432110 0000 011222 3344455554445567999999999975
No 245
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.57 E-value=0.0012 Score=64.62 Aligned_cols=35 Identities=14% Similarity=0.392 Sum_probs=28.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
.++|+|+||+||||+|+.|++.+ +.+++.++...+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~ 39 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSL 39 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchH
Confidence 58999999999999999999988 556666555443
No 246
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.57 E-value=0.0032 Score=82.09 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=56.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCC-C------ccccccchhHHHHHhCCCE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG-Y------IGYEEGGYLTEIVRRKPYS 531 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~------~g~~~~~~l~~~~~~~~~~ 531 (938)
+++++||||||||++|.+++......+.+...+++.+........ .+|-... + .+....+......+.....
T Consensus 1083 ~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~-~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~~d 1161 (2050)
T 3cmu_A 1083 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYAR-KLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1161 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHH-HTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHH-HcCCChhHheeecCcchHHHHHHHHHHHHhCCCC
Confidence 799999999999999999998887788899999988866553322 2221110 0 1111112222233456678
Q ss_pred EEEEccccccCH
Q psy14500 532 LILLDEIEKANS 543 (938)
Q Consensus 532 vl~lDEid~~~~ 543 (938)
+|+||++..+.+
T Consensus 1162 lvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1162 VIVVDSVAALTP 1173 (2050)
T ss_dssp EEEESCGGGCCC
T ss_pred EEEECCcccccc
Confidence 999999988844
No 247
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.54 E-value=0.0056 Score=60.43 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIF 482 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~ 482 (938)
.+.|.||+|+||||+.+.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 488999999999999999999874
No 248
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.51 E-value=0.0021 Score=63.53 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.9
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
.+.|+||+|+||||+++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 578999999999999999999875
No 249
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.50 E-value=0.0016 Score=64.12 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=25.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 490 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~ 490 (938)
.++|+||||||||++|+.||+.+ +.+++.
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l---~~~~i~ 35 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT---KRILYD 35 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 68999999999999999999998 555543
No 250
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.46 E-value=0.0014 Score=65.58 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.8
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
....++|+||||+||||+++.|++.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44679999999999999999999998
No 251
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.46 E-value=0.0061 Score=66.49 Aligned_cols=83 Identities=17% Similarity=0.238 Sum_probs=49.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCc---cccccch----hHHHHHhCCCE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYI---GYEEGGY----LTEIVRRKPYS 531 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~---g~~~~~~----l~~~~~~~~~~ 531 (938)
.++++||||+|||++|..++......+.++..++...-.... ....+|...... ....... +...++.....
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 689999999999999999987765556677777765433221 122233221100 0001111 12223345578
Q ss_pred EEEEccccccC
Q psy14500 532 LILLDEIEKAN 542 (938)
Q Consensus 532 vl~lDEid~~~ 542 (938)
+|+||++..+.
T Consensus 142 lIVIDsl~~l~ 152 (349)
T 2zr9_A 142 IIVIDSVAALV 152 (349)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcChHhhc
Confidence 99999998775
No 252
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.44 E-value=0.0084 Score=65.20 Aligned_cols=84 Identities=20% Similarity=0.213 Sum_probs=50.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCC--c-ccccc----chhHHHHHhCCCE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY--I-GYEEG----GYLTEIVRRKPYS 531 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~--~-g~~~~----~~l~~~~~~~~~~ 531 (938)
.++++||||+|||+|+..++..+...+.+++.++...-.... ...-+|..... + ..... ..+...++.....
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 688999999999999999998875556677788776543322 12222322110 0 00111 1122223345668
Q ss_pred EEEEccccccCH
Q psy14500 532 LILLDEIEKANS 543 (938)
Q Consensus 532 vl~lDEid~~~~ 543 (938)
+++||.+..+.+
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999876653
No 253
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.43 E-value=0.0043 Score=65.87 Aligned_cols=36 Identities=31% Similarity=0.480 Sum_probs=27.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
..++|.||||+||||+|+.|++.+ ...+..++...+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechHh
Confidence 368899999999999999999876 234556665333
No 254
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.42 E-value=0.0019 Score=63.34 Aligned_cols=26 Identities=42% Similarity=0.586 Sum_probs=23.6
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
...+|+|+|+||+||||+++.+++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999988
No 255
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.40 E-value=0.021 Score=67.30 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=36.3
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHH
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSA 479 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~ 479 (938)
..++|.+..+..+...+.... .....++++||+|+|||++|..+++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK-------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST-------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhccc-------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 458899999999998886321 1123689999999999999998864
No 256
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.36 E-value=0.0019 Score=63.00 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=22.6
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.+++|.|+||+||||+++.|++.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 479999999999999999999998
No 257
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.30 E-value=0.0025 Score=63.67 Aligned_cols=28 Identities=29% Similarity=0.449 Sum_probs=24.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESII 489 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~ 489 (938)
.++|+||||+||||+|+.|++.+ +.+++
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l---~~~~i 54 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL---NVPFI 54 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---TCCEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc---CCCEE
Confidence 69999999999999999999998 55554
No 258
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.30 E-value=0.015 Score=59.72 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=20.9
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.+++++||+|+|||.++.+++..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 459999999999999998887765
No 259
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.30 E-value=0.0019 Score=62.57 Aligned_cols=26 Identities=31% Similarity=0.470 Sum_probs=23.1
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
...+++|.|+|||||||+++.|++.+
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999999998
No 260
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.28 E-value=0.0023 Score=62.07 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=22.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..|+|.|+||+||||+++.|++.+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 357899999999999999999998
No 261
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.28 E-value=0.003 Score=61.14 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=24.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 490 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~ 490 (938)
.++|+||||+||||+|+.|++.+ +.+++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l---~~~~i~ 31 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL---KYPIIK 31 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH---CCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCeeec
Confidence 58899999999999999999988 445443
No 262
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.28 E-value=0.0074 Score=65.88 Aligned_cols=45 Identities=16% Similarity=0.377 Sum_probs=31.7
Q ss_pred CCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHc
Q psy14500 29 KLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIIN 78 (938)
Q Consensus 29 ~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~ 78 (938)
+++++ |....++.+ ...+...++++||+|+||||+.++++..+..
T Consensus 105 ~l~~l-g~~~~l~~l----~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 105 TMEEL-GMGEVFKRV----SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp CTTTT-TCCHHHHHH----HHCSSEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CHHHc-CChHHHHHH----HhCCCCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 45554 334444444 2344457899999999999999999988753
No 263
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.27 E-value=0.0056 Score=63.69 Aligned_cols=37 Identities=24% Similarity=0.372 Sum_probs=29.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
..++|.||||+||||+|+.|++.+ +...+.++...+.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~r 69 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSFR 69 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHHH
Confidence 478999999999999999999987 3345556665543
No 264
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.27 E-value=0.013 Score=63.59 Aligned_cols=125 Identities=13% Similarity=0.058 Sum_probs=65.7
Q ss_pred cchhhhhHHHHHhhhHHHHHhc---CCCCCccccH------HHHHHHHHHHh-c--CCCCCcEEEcCCCChHHHHHHHHH
Q psy14500 6 LDEEHIGYLKKYTIDLTEKARL---GKLDPVIGRD------DEIRRAIQVLQ-R--RSKNNPVLIGEPGVGKTAIVEGLA 73 (938)
Q Consensus 6 ~~e~~~~~~~~~~~~l~~~~~~---~~~~~lvG~~------~~~~~l~~~l~-~--~~~~~vLL~Gp~GtGKT~la~~la 73 (938)
..+++.++|+.--..+..++-. ..+.++-..+ --+..|-..|. . .+..-++|+||||+|||||+..++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la 82 (356)
T 3hr8_A 3 EEKQKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAI 82 (356)
T ss_dssp -CHHHHHHHHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHhCCCCceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHH
Confidence 3456667777776777766622 2333332111 11233333343 2 222347899999999999999999
Q ss_pred HHHHcCCCCCCcCCCeEEEEehhhhhc-------Cc-------cccchHHHHHHHHHHHHHhcCCCeEEEEeCcccccc
Q psy14500 74 QRIINGEVPNSLLSKKILLLDIALLLA-------GT-------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIG 138 (938)
Q Consensus 74 ~~l~~~~~p~~~~~~~~~~~~~~~l~~-------~~-------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~ 138 (938)
..+... +..+..++...... +. ......+. +...+..+.....+.+++||.+..+.+
T Consensus 83 ~~~~~~-------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~-~l~~~~~l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 83 AEAQKM-------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ-ALEIVDELVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHHHT-------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH-HHHHHHHHHHTSCCSEEEEECTTTCCC
T ss_pred HHHHhc-------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH-HHHHHHHHhhhcCCCeEEehHhhhhcC
Confidence 876432 23343344322100 00 00112222 223333333344567999999988875
No 265
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.26 E-value=0.0091 Score=64.63 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=47.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc-cccchhhhhhhcCCCCCCc---cccccchhHHHHHhCCCEEEE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS-EFIEKHSISRLIGAPPGYI---GYEEGGYLTEIVRRKPYSLIL 534 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~---g~~~~~~l~~~~~~~~~~vl~ 534 (938)
.+++.||+|+||||+.++|+..+... ...+.++.. ++... ..... .+++ |......+...+. ..+.+++
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~-~g~i~i~~~~e~~~~-~~~~~----i~~~~ggg~~~r~~la~aL~-~~p~ili 245 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKE-ERIISIEDTEEIVFK-HHKNY----TQLFFGGNITSADCLKSCLR-MRPDRII 245 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTT-SCEEEEESSCCCCCS-SCSSE----EEEECBTTBCHHHHHHHHTT-SCCSEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCC-CcEEEECCeeccccc-cchhE----EEEEeCCChhHHHHHHHHhh-hCCCEEE
Confidence 59999999999999999999887432 344455432 22110 00000 0111 2221122333333 3457999
Q ss_pred EccccccCHHHHHHHHHhhcC
Q psy14500 535 LDEIEKANSDVFNILLQILDD 555 (938)
Q Consensus 535 lDEid~~~~~~~~~Ll~~le~ 555 (938)
+||.-. .++++. ++.+..
T Consensus 246 ldE~~~--~e~~~~-l~~~~~ 263 (330)
T 2pt7_A 246 LGELRS--SEAYDF-YNVLCS 263 (330)
T ss_dssp ECCCCS--THHHHH-HHHHHT
T ss_pred EcCCCh--HHHHHH-HHHHhc
Confidence 999876 445553 444443
No 266
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.26 E-value=0.004 Score=68.00 Aligned_cols=121 Identities=12% Similarity=0.113 Sum_probs=64.8
Q ss_pred hhhhhHHHHHhhhHHHHHhcCCC---CCcccc--------HHHHHHHHHHHh-c--CCCCCcEEEcCCCChHHHHHHHHH
Q psy14500 8 EEHIGYLKKYTIDLTEKARLGKL---DPVIGR--------DDEIRRAIQVLQ-R--RSKNNPVLIGEPGVGKTAIVEGLA 73 (938)
Q Consensus 8 e~~~~~~~~~~~~l~~~~~~~~~---~~lvG~--------~~~~~~l~~~l~-~--~~~~~vLL~Gp~GtGKT~la~~la 73 (938)
+++.+.|+.--..+..++..+.. .++.-. -..+..+ |. . ++...++|+||||+|||+||..++
T Consensus 8 ~~~~~~l~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~---Lg~GGl~~G~ii~I~G~pGsGKTtLal~la 84 (356)
T 1u94_A 8 ENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIA---LGAGGLPMGRIVEIYGPESSGKTTLTLQVI 84 (356)
T ss_dssp --CHHHHHHHHHHHHHHHCTTSSCCTTCCCBCCCCEECCSCHHHHHH---TSSSSEETTSEEEEECSTTSSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhhCCCCceEccccccccCCcccCCCHHHHHH---hccCCccCCeEEEEECCCCCCHHHHHHHHH
Confidence 45666677766677766654432 222111 1234443 33 1 233457999999999999999998
Q ss_pred HHHHcCCCCCCcCCCeEEEEehhh----hh---cCcc------ccchHHHHHHHHHHHHHhcCCCeEEEEeCcccccc
Q psy14500 74 QRIINGEVPNSLLSKKILLLDIAL----LL---AGTK------YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIG 138 (938)
Q Consensus 74 ~~l~~~~~p~~~~~~~~~~~~~~~----l~---~~~~------~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~ 138 (938)
..+... +..+..++... .. .+.. ........+..++..+.+...+.+|+||.+..+..
T Consensus 85 ~~~~~~-------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 85 AAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEEECGGGCCC
T ss_pred HHHHHC-------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCCEEEEcCHHHhcc
Confidence 776432 23344444421 10 0000 00011123444555444344567999999999874
No 267
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.25 E-value=0.0032 Score=62.90 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=24.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 490 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~ 490 (938)
.++|+|+||+||||+|+.|++.+ +.+++.
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l---~~~~i~ 50 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL---GIPQIS 50 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCcEEe
Confidence 68999999999999999999988 445443
No 268
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.24 E-value=0.0081 Score=62.66 Aligned_cols=25 Identities=32% Similarity=0.539 Sum_probs=22.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIF 482 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~ 482 (938)
..++++||+|+||||+.++|+..+.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~ 50 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYIN 50 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCC
Confidence 4789999999999999999999874
No 269
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=96.24 E-value=0.013 Score=63.39 Aligned_cols=65 Identities=25% Similarity=0.355 Sum_probs=42.5
Q ss_pred cccccccc------------chHHHHHHHHHhcc-cCCccccccccccCCCCeeE-e-hhHHHHHhc----CCccEEEcC
Q psy14500 670 YGARDVHG------------CKKSLSILLKKIHK-KSPEANFIFLGDLINKGPQS-L-DTLRMVYSM----RNYAKIVLG 730 (938)
Q Consensus 670 ~~~~dl~~------------~~~~l~~~l~~~~~-~~~~~~li~~GD~~drg~~~-~-~v~~~~~~~----~~~~~~v~G 730 (938)
..++|+|. ....+.++++.+.- ....|.++++||+++.|... . .+.+++..+ .-.+++|+|
T Consensus 29 ~~iSD~H~~~~~~~~~~~~~~~~~l~~~l~~i~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~~~~~pv~~v~G 108 (330)
T 3ib7_A 29 LHISDTHLIGGDRRLYGAVDADDRLGELLEQLNQSGLRPDAIVFTGDLADKGEPAAYRKLRGLVEPFAAQLGAELVWVMG 108 (330)
T ss_dssp EEECCCCBCSSSCCBTTTBCHHHHHHHHHHHHHHHTCCCSEEEECSCCBTTCCHHHHHHHHHHHHHHHHHHTCEEEECCC
T ss_pred EEEeCCccCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHHHHhhcCCCEEEeCC
Confidence 34678884 35678888877663 13568999999999988632 1 122333222 334789999
Q ss_pred CChH
Q psy14500 731 NHEI 734 (938)
Q Consensus 731 NHe~ 734 (938)
|||.
T Consensus 109 NHD~ 112 (330)
T 3ib7_A 109 NHDD 112 (330)
T ss_dssp TTSC
T ss_pred CCCC
Confidence 9995
No 270
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.24 E-value=0.0024 Score=62.82 Aligned_cols=24 Identities=42% Similarity=0.692 Sum_probs=22.5
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..|+|+|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc
Confidence 468999999999999999999998
No 271
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.23 E-value=0.0047 Score=63.01 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.-+.|+||+|+|||||++.++..+
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 347899999999999999999854
No 272
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.22 E-value=0.016 Score=66.04 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=48.5
Q ss_pred eEEEEeCccccccCCCCCCccchhhhhhhhcc---CCceEEEEecChhHHHHhhhcCHHHHcccce-EEeeCCCHHHHHH
Q psy14500 126 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETIS 201 (938)
Q Consensus 126 ~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l~---~~~i~vI~~tn~~~~~~~~~ld~al~~Rf~~-i~~~~p~~~e~~~ 201 (938)
.+++|||+..++... ...+.+.+..+.. .-.+.+|.+|.++.. ..++..+++.|.. |-|...+..+...
T Consensus 299 ivlvIDE~~~ll~~~----~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~---dvl~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 299 IVVLVDEFADLMMTV----GKKVEELIARLAQKARAAGIHLVLATQRPSV---DVITGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp EEEEEETHHHHHHHH----HHHHHHHHHHHHHHCGGGTEEEEEEESCCCT---TTSCHHHHHHCCEEEEECCSSHHHHHH
T ss_pred EEEEEeCHHHHHhhh----hHHHHHHHHHHHHHhhhCCcEEEEEecCCcc---ccccHHHHhhcCCeEEEEcCCHHHHHH
Confidence 589999998876521 1223333433332 336788888877641 1477888888874 8999999998888
Q ss_pred HHH
Q psy14500 202 ILR 204 (938)
Q Consensus 202 il~ 204 (938)
|+.
T Consensus 372 ilg 374 (512)
T 2ius_A 372 ILD 374 (512)
T ss_dssp HHS
T ss_pred hcC
Confidence 874
No 273
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.20 E-value=0.0019 Score=63.62 Aligned_cols=25 Identities=36% Similarity=0.582 Sum_probs=22.6
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHH
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQR 75 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~ 75 (938)
.+.+++|+|+|||||||+++.|++.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHh
Confidence 3457999999999999999999998
No 274
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.19 E-value=0.003 Score=61.04 Aligned_cols=30 Identities=20% Similarity=0.480 Sum_probs=25.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 490 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~ 490 (938)
.+++|+|+|||||||+|+.||+.+ +.+++.
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~l---g~~~id 37 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLAL---KLEVLD 37 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 379999999999999999999988 556543
No 275
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.17 E-value=0.0026 Score=61.99 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|.||||+||||+|+.||+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999988
No 276
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.16 E-value=0.0046 Score=60.17 Aligned_cols=35 Identities=14% Similarity=0.309 Sum_probs=27.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
..++|+||||+||||+++.|+..+ + ...++...+.
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~~ 43 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFLH 43 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGGC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCcccc
Confidence 468999999999999999999887 3 3445554443
No 277
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.15 E-value=0.0097 Score=61.19 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.-++|+||||+||||++..++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 457999999999999999999853
No 278
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.13 E-value=0.013 Score=60.28 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=28.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 495 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 495 (938)
.++++||||+|||++|..++......+.+.+.++...
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 6899999999999999888776655556677666543
No 279
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.12 E-value=0.014 Score=63.94 Aligned_cols=83 Identities=18% Similarity=0.247 Sum_probs=49.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCC---ccccccch----hHHHHHhCCCE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY---IGYEEGGY----LTEIVRRKPYS 531 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~---~g~~~~~~----l~~~~~~~~~~ 531 (938)
.++++||||+|||++|..++..+...+.++..++...-.... ....+|..... ........ +...++.....
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~-~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV-YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH-HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 588999999999999999987765556678888776533221 11222321110 00011111 22223345578
Q ss_pred EEEEccccccC
Q psy14500 532 LILLDEIEKAN 542 (938)
Q Consensus 532 vl~lDEid~~~ 542 (938)
+|+||.+..+.
T Consensus 155 lVVIDsl~~l~ 165 (366)
T 1xp8_A 155 VVVVDSVAALT 165 (366)
T ss_dssp EEEEECTTTCC
T ss_pred EEEEeChHHhc
Confidence 99999998664
No 280
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.11 E-value=0.013 Score=60.34 Aligned_cols=26 Identities=31% Similarity=0.455 Sum_probs=21.1
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
...++|+||||+|||+++..++....
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~~ 48 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNGL 48 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34579999999999999988876543
No 281
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.10 E-value=0.004 Score=60.39 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=22.5
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..+.|+||||+||||+++.|+..+
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 578999999999999999999987
No 282
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.09 E-value=0.0036 Score=64.82 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=24.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc-cCCCceEEecc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDM 493 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~ 493 (938)
.+.|.||+|+||||+++.|+.... ..+...+.++.
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 688999999999999999984332 22334444443
No 283
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.09 E-value=0.0089 Score=60.40 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=27.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 495 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 495 (938)
.++++||||+|||++++.++. . .+.+++.++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-L--SGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEECCC
Confidence 689999999999999999998 2 355777777654
No 284
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.06 E-value=0.0041 Score=60.90 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+|+||+|||++++.|++.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999988
No 285
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.06 E-value=0.0035 Score=62.00 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=29.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 495 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 495 (938)
.++|.|+||+||||+|+.|++.+...+.++..++..+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 5899999999999999999998854455566665443
No 286
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.06 E-value=0.085 Score=55.96 Aligned_cols=95 Identities=18% Similarity=0.254 Sum_probs=53.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhcc-CCCceEEeccccccchhh--h---hhhcCCCCCCccccccchhHHHH-HhCCC
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFN-NEESIIRIDMSEFIEKHS--I---SRLIGAPPGYIGYEEGGYLTEIV-RRKPY 530 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~-~~~~~~~~~~~~~~~~~~--~---~~l~g~~~~~~g~~~~~~l~~~~-~~~~~ 530 (938)
..++|+||+|+||||++..||..+.. .+..+..+++..+..... . ....|-+. +...+ ...+...+ ....+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~-~~~~~-~~~l~~al~~~~~~ 183 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL-EVCYT-KEEFQQAKELFSEY 183 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCC-CBCSS-HHHHHHHHHHGGGS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCe-EecCC-HHHHHHHHHHhcCC
Confidence 37899999999999999999988853 565666666655432110 1 11222211 11111 11222222 22446
Q ss_pred EEEEEccccccCH--HHHHHHHHhhc
Q psy14500 531 SLILLDEIEKANS--DVFNILLQILD 554 (938)
Q Consensus 531 ~vl~lDEid~~~~--~~~~~Ll~~le 554 (938)
.++++|-....+. .....|..++.
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSC
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHh
Confidence 7999996654443 34455556554
No 287
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.04 E-value=0.0036 Score=61.50 Aligned_cols=28 Identities=18% Similarity=0.465 Sum_probs=24.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESII 489 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~ 489 (938)
.++|+|+||+|||++|+.|++.+ +.+++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l---g~~~i 31 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL---GVGLL 31 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH---TCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHc---CCCEE
Confidence 48999999999999999999988 55544
No 288
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.02 E-value=0.0037 Score=65.08 Aligned_cols=23 Identities=26% Similarity=0.315 Sum_probs=21.5
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.++|+||||+||||+|+.||+.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 47899999999999999999988
No 289
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.02 E-value=0.013 Score=63.85 Aligned_cols=123 Identities=14% Similarity=0.081 Sum_probs=64.3
Q ss_pred hhhhhHHHHHhhhHHHHHhcCC---CCCccccH-----HHHHHHHHHHh-c--CCCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 8 EEHIGYLKKYTIDLTEKARLGK---LDPVIGRD-----DEIRRAIQVLQ-R--RSKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 8 e~~~~~~~~~~~~l~~~~~~~~---~~~lvG~~-----~~~~~l~~~l~-~--~~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.++.+.|..--..+..++..+. +.++.... --+..|-..|. . ....-++|+||||+|||||+..++..+
T Consensus 6 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~~~i~TG~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 6 PDREKALELAMAQIDKNFGKGSVMRLGEEVRQPISVIPTGSISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHCTTSSCCTTCCCCCCCCEECCSCHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCCCceeccccccccCCccccCCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3555666666666666664432 33321111 01222333333 1 223447999999999999999998766
Q ss_pred HcCCCCCCcCCCeEEEEehhhhh-------cCcc-------ccchHHHHHHHHHHHHHhcCCCeEEEEeCcccccc
Q psy14500 77 INGEVPNSLLSKKILLLDIALLL-------AGTK-------YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIG 138 (938)
Q Consensus 77 ~~~~~p~~~~~~~~~~~~~~~l~-------~~~~-------~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~ 138 (938)
... +..+..++..... .+.. .....+ .+..++..+.....+.+|+||++..+.+
T Consensus 86 ~~~-------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e-~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 86 QAA-------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGE-QALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHH-HHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred HhC-------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHH-HHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 432 2233333332110 0000 001122 2333444444445577999999999874
No 290
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.01 E-value=0.015 Score=63.47 Aligned_cols=83 Identities=18% Similarity=0.242 Sum_probs=50.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCC--c-cccccch----hHHHHHhCCCE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY--I-GYEEGGY----LTEIVRRKPYS 531 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~--~-g~~~~~~----l~~~~~~~~~~ 531 (938)
.++++||||+|||++|..++..+...+.+++.++...-..... ..-+|..... + ....... +...++.....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-HHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 6899999999999999999887755566788888754332221 1222321110 0 0001111 12223445678
Q ss_pred EEEEccccccC
Q psy14500 532 LILLDEIEKAN 542 (938)
Q Consensus 532 vl~lDEid~~~ 542 (938)
+|+||.+..+.
T Consensus 144 lVVIDsl~~l~ 154 (356)
T 1u94_A 144 VIVVDSVAALT 154 (356)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcCHHHhc
Confidence 99999998765
No 291
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.00 E-value=0.016 Score=61.75 Aligned_cols=26 Identities=19% Similarity=0.208 Sum_probs=22.4
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
..-++|.||||+|||||++.++..+.
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~ 60 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWG 60 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999998764
No 292
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.00 E-value=0.0039 Score=60.43 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=22.5
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..|+|.|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998
No 293
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.00 E-value=0.0035 Score=63.68 Aligned_cols=26 Identities=38% Similarity=0.588 Sum_probs=23.5
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
++..|+|.|+||+||||+++.|++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999999999999999999998
No 294
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.98 E-value=0.022 Score=66.41 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.8
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHc
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRIIN 78 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l~~ 78 (938)
.+.+++.||||||||+++.+++..+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999987754
No 295
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.97 E-value=0.0048 Score=64.17 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=26.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 493 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 493 (938)
.+++.||||+|||++|+.||+.+ +.+++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~---~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET---GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC---CCeEEeccH
Confidence 58899999999999999999988 555555443
No 296
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.97 E-value=0.0029 Score=62.65 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..|+|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3457899999999999999999988
No 297
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.97 E-value=0.0043 Score=61.03 Aligned_cols=36 Identities=17% Similarity=0.472 Sum_probs=27.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 498 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 498 (938)
.++|+|+||||||++++.|++.+. .+..+++..+..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~----g~~~id~d~~~~ 47 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELD----GFQHLEVGKLVK 47 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST----TEEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC----CCEEeeHHHHHH
Confidence 699999999999999999999831 344555555443
No 298
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.96 E-value=0.0096 Score=63.60 Aligned_cols=33 Identities=24% Similarity=0.400 Sum_probs=27.7
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
..++|+||+||||||++..||+.+ +..++..|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL----------PCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccc
Confidence 368899999999999999999988 666666654
No 299
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.95 E-value=0.0042 Score=61.27 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=27.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 495 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 495 (938)
.++|+|+||+||||+++.|++.+...+.++..++.++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~ 41 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHH
Confidence 5899999999999999999998843332244444433
No 300
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.93 E-value=0.0039 Score=62.26 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=22.6
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..|+|+|+||+||||+++.|++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999999988
No 301
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.92 E-value=0.0039 Score=60.46 Aligned_cols=23 Identities=26% Similarity=0.690 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|+||||+||||+++.|+..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 302
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.92 E-value=0.0047 Score=61.72 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..|+|+|+||+||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999988
No 303
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=95.91 E-value=0.054 Score=60.39 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=45.0
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-------------Cc-----cccchHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------------GT-----KYRGEFEDRLKK 114 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~-------------~~-----~~~g~~~~~l~~ 114 (938)
.-++++|++|+||||++..||..+... +.++..+++..... +. ....+....+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~ 173 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKE 173 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHH
Confidence 347889999999999999999888653 33444444321100 00 001122333455
Q ss_pred HHHHHHhcCCCeEEEEeCcccc
Q psy14500 115 ILKEISNNQKDIIIFIDELHTM 136 (938)
Q Consensus 115 ~~~~a~~~~~~~iL~iDEid~l 136 (938)
.+..+...+ .-++|||.+..+
T Consensus 174 al~~a~~~~-~DvVIIDTaGrl 194 (443)
T 3dm5_A 174 GVDYFKSKG-VDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHTT-CSEEEEECCCCS
T ss_pred HHHHHHhCC-CCEEEEECCCcc
Confidence 666666422 348999988655
No 304
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.91 E-value=0.005 Score=60.86 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=24.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 490 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~ 490 (938)
.++|+|+||+||||+|+.|++.+ +.+++.
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l---~~~~i~ 35 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL---RLPLLS 35 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH---TCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCeEec
Confidence 68899999999999999999988 445443
No 305
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.87 E-value=0.0041 Score=61.65 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.4
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.+..|+|.|+||+||||+++.|++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999988
No 306
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.85 E-value=0.0066 Score=65.45 Aligned_cols=42 Identities=31% Similarity=0.491 Sum_probs=31.5
Q ss_pred ccHHHHHHHHHHHh----cCCCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 35 GRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 35 G~~~~~~~l~~~l~----~~~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..+..++.++..+. .+...+++|+|+||+||||++++|++.+
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34455555555543 3445679999999999999999999987
No 307
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.83 E-value=0.0057 Score=61.27 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.3
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.++|.||||+||+|.|+.|++.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999999988
No 308
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.81 E-value=0.0071 Score=62.46 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=23.3
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.+..|+|.||||+||||+|+.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44568999999999999999999988
No 309
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.80 E-value=0.005 Score=59.66 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+|+||+|||++|+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 310
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.77 E-value=0.011 Score=58.00 Aligned_cols=90 Identities=13% Similarity=0.080 Sum_probs=48.8
Q ss_pred EEEEeCCCCCcHH-HHHHHHHHHhccCCCceEEeccc---cccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEE
Q psy14500 459 SFMFLGPTGVGKT-ELCKTLSACIFNNEESIIRIDMS---EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLIL 534 (938)
Q Consensus 459 ~iLl~GppGtGKT-~lA~~la~~l~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~ 534 (938)
-.+++||.|+||| +|.+++.++... +..+..+... .+... -.+.+ |.....+-......+....+ +..+|+
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~~~-i~S~~-g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSSS-FCTHD-RNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGGGS-CCHHH-HHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccchhh-hhhcc-CCcccceecCCHHHHHHhcc--CCCEEE
Confidence 4678999999999 899999988754 3455555422 22211 11111 11000000111122333333 346999
Q ss_pred EccccccCHHHHHHHHHhhc
Q psy14500 535 LDEIEKANSDVFNILLQILD 554 (938)
Q Consensus 535 lDEid~~~~~~~~~Ll~~le 554 (938)
|||+.=+ ++..+.+..+.+
T Consensus 97 IDEaQFf-k~~ve~~~~L~~ 115 (195)
T 1w4r_A 97 IDEGQFF-PDIVEFCEAMAN 115 (195)
T ss_dssp ESSGGGC-TTHHHHHHHHHH
T ss_pred EEchhhh-HHHHHHHHHHHH
Confidence 9999999 665555544444
No 311
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.77 E-value=0.0061 Score=60.88 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+|+||+||||+|+.|++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 312
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.77 E-value=0.018 Score=58.60 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=27.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhcc------CCCceEEecccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFN------NEESIIRIDMSE 495 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~------~~~~~~~~~~~~ 495 (938)
.+.|.||+|+|||++++.|+..+.. .....+.++...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 6889999999999999999985522 133456665543
No 313
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.77 E-value=0.0058 Score=62.02 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=22.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|.|+||+||||+|+.|++.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999988
No 314
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.76 E-value=0.0045 Score=64.05 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.2
Q ss_pred CCCcEEEcCCCChHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQ 74 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~ 74 (938)
..-+.|+||+|+|||||++.++.
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~ 52 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIY 52 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHH
Confidence 45679999999999999999984
No 315
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.75 E-value=0.0063 Score=58.67 Aligned_cols=28 Identities=18% Similarity=0.261 Sum_probs=24.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESII 489 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~ 489 (938)
.++|+|+||+|||++|+.|++.+ +.+++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l---~~~~i 29 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL---NIPFY 29 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH---TCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 48999999999999999999988 44544
No 316
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.75 E-value=0.0042 Score=60.24 Aligned_cols=23 Identities=26% Similarity=0.443 Sum_probs=20.2
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..|+|+||||+||||+++.| +.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHC
Confidence 35789999999999999999 665
No 317
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.74 E-value=0.0046 Score=60.54 Aligned_cols=28 Identities=36% Similarity=0.508 Sum_probs=20.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceE
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESII 489 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~ 489 (938)
.++|+|+||+||||+|+.|++.+ +.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l---~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL---PGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS---TTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCEE
Confidence 68999999999999999999987 44554
No 318
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.73 E-value=0.0085 Score=59.11 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=22.1
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
.|+|.|+||+||||+++.|++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 319
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.72 E-value=0.0057 Score=61.66 Aligned_cols=23 Identities=35% Similarity=0.570 Sum_probs=21.1
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
-|+|.||||+||+|.|+.|++.+
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46778999999999999999988
No 320
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=95.71 E-value=0.015 Score=64.10 Aligned_cols=86 Identities=20% Similarity=0.366 Sum_probs=48.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccC-CCceEEeccc-cccchhhhhhhcCCCCCCccc-----cc---cchhHHHHHh
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDMS-EFIEKHSISRLIGAPPGYIGY-----EE---GGYLTEIVRR 527 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~g~-----~~---~~~l~~~~~~ 527 (938)
..++++||+|+||||+.++|+..+... ...+..++-. ++. +....+++.. +. ...+...++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~--------~~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYV--------FKHKKSIVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSC--------CCCSSSEEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhh--------hccCceEEEeeecCCCHHHHHHHHHHHhhh
Confidence 479999999999999999999987533 3344443321 110 0011111111 11 1223344444
Q ss_pred CCCEEEEEccccccCHHHHHHHHHhhc
Q psy14500 528 KPYSLILLDEIEKANSDVFNILLQILD 554 (938)
Q Consensus 528 ~~~~vl~lDEid~~~~~~~~~Ll~~le 554 (938)
.+.+|++||+- +++....+++...
T Consensus 209 -~pd~illdE~~--d~e~~~~~l~~~~ 232 (372)
T 2ewv_A 209 -DPDVIFVGEMR--DLETVETALRAAE 232 (372)
T ss_dssp -CCSEEEESCCC--SHHHHHHHHHHHT
T ss_pred -CcCEEEECCCC--CHHHHHHHHHHHh
Confidence 45799999996 4554444455443
No 321
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.70 E-value=0.0093 Score=59.49 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=27.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 494 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 494 (938)
.+.|.||+|+||||++++|+..+...+...+.++..
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d 62 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGD 62 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCc
Confidence 688999999999999999999885434333345543
No 322
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.69 E-value=0.0058 Score=62.65 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=23.1
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..|+|.|+||+||||+++.|++.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999998
No 323
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.66 E-value=0.0048 Score=61.04 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=22.2
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..|+|.|+||+||||+++.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999988
No 324
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.66 E-value=0.0061 Score=60.19 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=27.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
.+.|.||||+||||+++.|+... +...+.++..++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccch
Confidence 68899999999999999999763 445566665543
No 325
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.66 E-value=0.0066 Score=60.14 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+|+||+||||+|+.|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999988
No 326
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.65 E-value=0.0081 Score=59.93 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=23.3
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..+..+.|+||+|+||||+++.|+..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 345578999999999999999999987
No 327
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.64 E-value=0.006 Score=59.05 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+||||+||||+|+.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5889999999999999999 655
No 328
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.64 E-value=0.026 Score=57.91 Aligned_cols=91 Identities=15% Similarity=0.208 Sum_probs=49.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEe-ccccccch--hhhhhhcCCC-CCC-ccccc---------cchhHHH
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRI-DMSEFIEK--HSISRLIGAP-PGY-IGYEE---------GGYLTEI 524 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~-~~~~~~~~--~~~~~l~g~~-~~~-~g~~~---------~~~l~~~ 524 (938)
.++++||+|+|||.+|.+++..+ +.+++.+ ....+... ..... +|.. .+. .|... ...+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~ 185 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAYVN 185 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHHHT
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHHhh
Confidence 48999999999999998888765 3344433 33233322 11112 2221 110 01000 0111111
Q ss_pred HH--hCCCEEEEEccccccCHHHHHHHHHhh
Q psy14500 525 VR--RKPYSLILLDEIEKANSDVFNILLQIL 553 (938)
Q Consensus 525 ~~--~~~~~vl~lDEid~~~~~~~~~Ll~~l 553 (938)
.. ....++|+|||++.+.......++..+
T Consensus 186 ~~~~~~~~~llIiDEaH~l~~~~~~~i~~~~ 216 (237)
T 2fz4_A 186 AEKLGNRFMLLIFDEVHHLPAESYVQIAQMS 216 (237)
T ss_dssp HHHHTTTCSEEEEECSSCCCTTTHHHHHHTC
T ss_pred HHHhcccCCEEEEECCccCCChHHHHHHHhc
Confidence 11 134689999999999877666665554
No 329
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.63 E-value=0.0073 Score=59.31 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=22.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..++|.|+||+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358999999999999999999988
No 330
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.63 E-value=0.0057 Score=60.12 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+|+||+||||+|+.|++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 331
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.62 E-value=0.012 Score=57.95 Aligned_cols=36 Identities=19% Similarity=0.220 Sum_probs=29.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 493 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 493 (938)
..++|+|+||+||||+++.|+..+...+.++..++.
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 368899999999999999999998655555555554
No 332
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.62 E-value=0.0091 Score=58.53 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=20.4
Q ss_pred CcEEEcCCCChHH-HHHHHHHHHHHc
Q psy14500 54 NPVLIGEPGVGKT-AIVEGLAQRIIN 78 (938)
Q Consensus 54 ~vLL~Gp~GtGKT-~la~~la~~l~~ 78 (938)
-.+++||.|+||| .|.+++.+....
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc
Confidence 3578899999999 788888877644
No 333
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.62 E-value=0.014 Score=61.68 Aligned_cols=24 Identities=33% Similarity=0.451 Sum_probs=21.5
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.-++|.||+|+|||+|+..+|+.+
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhC
Confidence 346788999999999999999987
No 334
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.61 E-value=0.0068 Score=59.74 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.7
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
..|+|.|+||+||||+++.|++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999884
No 335
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.61 E-value=0.022 Score=67.14 Aligned_cols=26 Identities=15% Similarity=0.314 Sum_probs=21.8
Q ss_pred CCEEEEEccccccCHHHHHHHHHhhc
Q psy14500 529 PYSLILLDEIEKANSDVFNILLQILD 554 (938)
Q Consensus 529 ~~~vl~lDEid~~~~~~~~~Ll~~le 554 (938)
+..+|++||++.++......|+..+.
T Consensus 262 ~~d~lIIDEAsml~~~~~~~Ll~~l~ 287 (608)
T 1w36_D 262 HLDVLVVDEASMIDLPMMSRLIDALP 287 (608)
T ss_dssp SCSEEEECSGGGCBHHHHHHHHHTCC
T ss_pred CCCEEEEechhhCCHHHHHHHHHhCC
Confidence 35699999999999888888888764
No 336
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.60 E-value=0.0052 Score=62.26 Aligned_cols=25 Identities=40% Similarity=0.616 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..|+|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568999999999999999999998
No 337
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.60 E-value=0.0073 Score=60.99 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+||||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 338
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.59 E-value=0.0046 Score=62.53 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.3
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.|+|.||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 339
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.59 E-value=0.019 Score=59.82 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
+..|+|+|+||+||||+++.|++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34689999999999999999999864
No 340
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.59 E-value=0.0061 Score=58.78 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.6
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.|+|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 341
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.59 E-value=0.015 Score=61.28 Aligned_cols=33 Identities=24% Similarity=0.382 Sum_probs=26.7
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
.-++|.||+|+|||+|+..+|+.+ +..++..|.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL----------PVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----------CEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhC----------CCcEEeccc
Confidence 346788999999999999999987 556665554
No 342
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.58 E-value=0.0058 Score=60.73 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.5
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..|+|.|+||+||||+++.|++.+
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHh
Confidence 568999999999999999999998
No 343
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.57 E-value=0.0068 Score=61.25 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=21.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+||||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999887
No 344
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.57 E-value=0.0059 Score=61.72 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=21.5
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.|+|.||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 345
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.57 E-value=0.0073 Score=61.36 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.+..|+|.|+||+||||+++.|++.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999999998
No 346
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.57 E-value=0.0056 Score=64.96 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.5
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..++|.||||+||||+++.+++.+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 347889999999999999999876
No 347
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.57 E-value=0.0052 Score=62.74 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..|+|.|+||+||||+++.|++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999999987
No 348
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.57 E-value=0.0083 Score=61.50 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=22.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|.|+||+||||+|+.|++.+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999988
No 349
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.56 E-value=0.0074 Score=59.64 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+|+||+||||+|+.|++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999987
No 350
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.54 E-value=0.018 Score=59.44 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+||||+||||+|+.|++.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999887
No 351
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.53 E-value=0.0067 Score=58.98 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=21.9
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..++|+||||+||||+++.++..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 457899999999999999999887
No 352
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.52 E-value=0.087 Score=56.52 Aligned_cols=42 Identities=19% Similarity=0.295 Sum_probs=33.4
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 455 RPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 455 ~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
.+...++|+||+|+||||++..||..+...+..+..+++..+
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 334578999999999999999999988666667777776543
No 353
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.49 E-value=0.012 Score=57.51 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=28.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 493 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 493 (938)
.+.|+|++|+||||+++.|+..+...+.+++.++.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 68899999999999999999987544566776654
No 354
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.49 E-value=0.0098 Score=62.11 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=28.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 494 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 494 (938)
.++|+|+||+||||+|+.|++.+...+.+++.++..
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 689999999999999999999864345566645543
No 355
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.49 E-value=0.0053 Score=60.65 Aligned_cols=24 Identities=46% Similarity=0.630 Sum_probs=21.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..+.|+||||+||||+++.|+...
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 457899999999999999998753
No 356
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.48 E-value=0.0069 Score=60.46 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=24.8
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 49 RRSKNNPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 49 ~~~~~~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
...+..+.|+||+|+||||+++.|+..+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34456688999999999999999999884
No 357
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.48 E-value=0.16 Score=58.35 Aligned_cols=72 Identities=14% Similarity=0.173 Sum_probs=50.7
Q ss_pred CEEEEEcccccc----CHHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhh
Q psy14500 530 YSLILLDEIEKA----NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI 605 (938)
Q Consensus 530 ~~vl~lDEid~~----~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~ 605 (938)
+-+|+|||+..+ +..+...|.++...|+ ...+.+|++|..+.. .
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GR----------a~GIhLIlaTQRPs~----------------------d 391 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKAR----------AAGIHLILATQRPSV----------------------D 391 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCT----------TTTEEEEEEESCCCT----------------------T
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHh----------hCCeEEEEEecCccc----------------------c
Confidence 468999999865 4566677777777654 234567777776542 1
Q ss_pred ccChHHhhcCCeEEEccCCCHHHHHHHH
Q psy14500 606 YFRPEFINRIDDIIVFRYLNRKNILSIA 633 (938)
Q Consensus 606 ~~~~~l~~R~~~~i~f~~l~~e~~~~i~ 633 (938)
.++..+.+-|...|.|.-.+..+...|+
T Consensus 392 ~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 392 VITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp TSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred cccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 2556677888888889988888887774
No 358
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.47 E-value=0.0095 Score=59.46 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+|+||+||||+|+.|++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68899999999999999999887
No 359
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.46 E-value=0.0054 Score=60.08 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=18.6
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..|+|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3568899999999999999999987
No 360
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.46 E-value=0.02 Score=58.69 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=28.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhcc------CCCceEEecccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFN------NEESIIRIDMSE 495 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~------~~~~~~~~~~~~ 495 (938)
.++|+||||+|||++++.++..... .+...+.++...
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 6899999999999999999985321 245677777655
No 361
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.44 E-value=0.077 Score=52.02 Aligned_cols=30 Identities=23% Similarity=0.314 Sum_probs=24.9
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHcC
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQRIING 79 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~l~~~ 79 (938)
...++|++++++|.||||+|-.+|-+....
T Consensus 26 ~~~g~i~v~tG~GkGKTTaA~GlalRA~g~ 55 (196)
T 1g5t_A 26 EERGIIIVFTGNGKGKTTAAFGTAARAVGH 55 (196)
T ss_dssp -CCCCEEEEESSSSCHHHHHHHHHHHHHHT
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 346899999999999999999998876543
No 362
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.43 E-value=0.01 Score=59.84 Aligned_cols=34 Identities=21% Similarity=0.448 Sum_probs=26.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
.++|.||||+||+|.|+.|++.+ .+..+...++.
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdll 64 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLL 64 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHH
Confidence 67889999999999999999988 34455554433
No 363
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.42 E-value=0.028 Score=62.29 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=19.4
Q ss_pred CCcEEEcCCCChHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQR 75 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~ 75 (938)
.-++|+||||+|||||++.++-.
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 34789999999999999977644
No 364
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.42 E-value=0.0062 Score=60.86 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.9
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..|+|.|+||+||||+++.|++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999987
No 365
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.41 E-value=0.079 Score=53.28 Aligned_cols=92 Identities=11% Similarity=-0.056 Sum_probs=47.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc--cccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEEc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS--EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 536 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~lD 536 (938)
..+++||.|+|||+.+-..+......+..+..+... .-.. ..+..-+|......+......+...+ .+..+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg-~~i~sr~G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYS-SSFCTHDRNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccch-HHHHhhcCCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 567899999999977666655555556666555421 1111 11111113221111111112233333 446799999
Q ss_pred cccccCHHHHHHHHHhhcC
Q psy14500 537 EIEKANSDVFNILLQILDD 555 (938)
Q Consensus 537 Eid~~~~~~~~~Ll~~le~ 555 (938)
|+.-+.. ...+...+++
T Consensus 98 EaQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 98 EGQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp SGGGCTT--HHHHHHHHHH
T ss_pred chhhhhh--HHHHHHHHHh
Confidence 9998864 5566666653
No 366
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.39 E-value=0.0083 Score=59.58 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=26.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
.++|+|+||+||||+|+.|++.+ + +..++...+
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~~ 46 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTGEL 46 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHHHH
Confidence 58999999999999999999988 3 344554443
No 367
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.39 E-value=0.011 Score=58.22 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=23.4
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHc
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRIIN 78 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l~~ 78 (938)
+..++|.|+||+||||+++.++..+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999998843
No 368
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.38 E-value=0.028 Score=56.02 Aligned_cols=38 Identities=24% Similarity=0.265 Sum_probs=29.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
.+.++||+|+||||+++.|+..+...+.++...+...+
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~ 61 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDH 61 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcc
Confidence 68899999999999999999987544555665554443
No 369
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.37 E-value=0.0075 Score=59.52 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=22.2
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..|+|.|+||+||||+++.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999988
No 370
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.37 E-value=0.011 Score=58.19 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+|+||+||||+|+.|++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 371
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.36 E-value=0.012 Score=59.01 Aligned_cols=33 Identities=30% Similarity=0.576 Sum_probs=26.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
.++|.||||+||+|.|+.|++.+ .+..++..++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHH
Confidence 48899999999999999999988 3445554444
No 372
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.35 E-value=0.0073 Score=58.87 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.7
Q ss_pred CcEEEcCCCChHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQ 74 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~ 74 (938)
.|+|.|+||+||||+++.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999999999998
No 373
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.33 E-value=0.0089 Score=60.52 Aligned_cols=23 Identities=22% Similarity=0.567 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|.|+||+||||+|+.|++.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999988
No 374
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.32 E-value=0.012 Score=58.65 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=26.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
.+.|.||+|+||||+++.|+..+ + .+.++...+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~ 63 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAF 63 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccc
Confidence 68899999999999999999987 3 344555444
No 375
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.31 E-value=0.013 Score=57.90 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=27.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 492 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 492 (938)
.+.|+|+||+||||+|+.|++.+...+.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4789999999999999999998744455666544
No 376
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.29 E-value=0.011 Score=61.16 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=22.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|.|++|+||||+++.||..+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 59999999999999999999988
No 377
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.28 E-value=0.0092 Score=59.73 Aligned_cols=25 Identities=24% Similarity=0.426 Sum_probs=22.4
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..++|+||||+||||+++.|++.+
T Consensus 12 ~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 12 IPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 4568999999999999999999876
No 378
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.27 E-value=0.076 Score=59.84 Aligned_cols=38 Identities=21% Similarity=0.217 Sum_probs=28.7
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 494 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 494 (938)
...++|.||+|+||||+++.|+..+...+..+...+..
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D 330 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 330 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCC
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCc
Confidence 34788999999999999999999885444454444443
No 379
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.26 E-value=0.01 Score=59.88 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|.|+||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 380
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.26 E-value=0.0071 Score=62.91 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.9
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..++|.|+||+||||+++.|++.+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999987
No 381
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.24 E-value=0.0088 Score=60.99 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|.|+||+||||+|+.|++.+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999987
No 382
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.23 E-value=0.12 Score=57.84 Aligned_cols=96 Identities=16% Similarity=0.308 Sum_probs=56.3
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHHhccC-CCceEEeccccccchhhh-----hhhcCCC--CCCccccccchhHHHH--
Q psy14500 456 PYGSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDMSEFIEKHSI-----SRLIGAP--PGYIGYEEGGYLTEIV-- 525 (938)
Q Consensus 456 ~~~~iLl~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~~~~~~~~~~-----~~l~g~~--~~~~g~~~~~~l~~~~-- 525 (938)
+...++|+|++|+||||++-.||..+... +..+.-+++..+...... ....|-+ +...+.+....+...+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34578899999999999999999988766 778888888765432111 1111110 0001112222222222
Q ss_pred -HhCCCEEEEEccccccCH--HHHHHHHH
Q psy14500 526 -RRKPYSLILLDEIEKANS--DVFNILLQ 551 (938)
Q Consensus 526 -~~~~~~vl~lDEid~~~~--~~~~~Ll~ 551 (938)
+...+.+++||=...++. ...+.|..
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~ 207 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQ 207 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHH
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHH
Confidence 334568999998766543 44454443
No 383
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.20 E-value=0.0079 Score=60.71 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.6
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+|+|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 384
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.20 E-value=0.0097 Score=57.96 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=19.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q psy14500 459 SFMFLGPTGVGKTELCKTLSA 479 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~ 479 (938)
.++|.|+||+||||+|+.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 588999999999999999998
No 385
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.18 E-value=0.01 Score=58.17 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.6
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+.|+|+||||+|||||++.|.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 458999999999999999998876
No 386
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.16 E-value=0.012 Score=62.88 Aligned_cols=31 Identities=32% Similarity=0.685 Sum_probs=25.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 492 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 492 (938)
.++++||||+|||++|+.||+.+ +..++..|
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~D 37 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVD 37 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEecc
Confidence 68999999999999999999988 44555544
No 387
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.13 E-value=0.029 Score=55.87 Aligned_cols=43 Identities=19% Similarity=0.146 Sum_probs=30.8
Q ss_pred cHHHHHHHHHHHhcC---CCCCcEEEcCCCChHHHHHHHHHHHHHc
Q psy14500 36 RDDEIRRAIQVLQRR---SKNNPVLIGEPGVGKTAIVEGLAQRIIN 78 (938)
Q Consensus 36 ~~~~~~~l~~~l~~~---~~~~vLL~Gp~GtGKT~la~~la~~l~~ 78 (938)
+++.++.+...+... .+.-+.|.|++|+||||+++.++..+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~ 48 (201)
T 1rz3_A 3 LRDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLRE 48 (201)
T ss_dssp HHHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 345666666655532 2234788899999999999999988743
No 388
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.12 E-value=0.015 Score=57.32 Aligned_cols=25 Identities=20% Similarity=0.129 Sum_probs=20.6
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHc
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRIIN 78 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~~ 78 (938)
-.+++||+|+||||.+..++.++..
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~ 34 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKI 34 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3577899999999999888887743
No 389
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.11 E-value=0.031 Score=60.35 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.8
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
...++|+||+|+||||++++++..+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999876
No 390
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.11 E-value=0.024 Score=62.23 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+||||+|||+++++|+..+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 68999999999999999999876
No 391
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.10 E-value=0.13 Score=57.22 Aligned_cols=27 Identities=30% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHHcC
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRIING 79 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l~~~ 79 (938)
..++++||+|+||||++..||..+...
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~ 124 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKR 124 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 346888999999999999999887543
No 392
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.09 E-value=0.024 Score=64.35 Aligned_cols=24 Identities=33% Similarity=0.483 Sum_probs=21.0
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
-++|.|+||+|||+++..++..+.
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~ 228 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVA 228 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 368889999999999999988764
No 393
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.09 E-value=0.016 Score=58.06 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=22.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhcc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFN 483 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~ 483 (938)
.++|.|+||+||||+|+.|++.+..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5889999999999999999998843
No 394
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.08 E-value=0.016 Score=59.90 Aligned_cols=39 Identities=18% Similarity=0.312 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhc-CCCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 38 DEIRRAIQVLQR-RSKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 38 ~~~~~l~~~l~~-~~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..++.+--.+.. .....+.|+|++|+||||+++.|++.+
T Consensus 33 ~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 33 QILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp HHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 445554433332 124689999999999999999999998
No 395
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.06 E-value=0.0073 Score=64.72 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=22.0
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..|+|+||+|||||+|+..||+.+
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC
Confidence 358899999999999999999987
No 396
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.05 E-value=0.034 Score=60.64 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.2
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.-+.|+||||+|||||++.++...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 347899999999999999999875
No 397
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.05 E-value=0.014 Score=58.02 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=21.5
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.|.|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999988
No 398
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.04 E-value=0.078 Score=56.90 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=20.7
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
-++|.|+||+|||+++..+|....
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a 93 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMS 93 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHH
Confidence 468889999999999999987654
No 399
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.02 E-value=0.0083 Score=60.95 Aligned_cols=23 Identities=22% Similarity=0.411 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|.||||+||||+|+.|++.+
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 400
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.01 E-value=0.013 Score=59.64 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|.|+||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999987
No 401
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.00 E-value=0.032 Score=60.10 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=22.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+++|.||||+|||+++++||..+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 469999999999999999999988
No 402
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.00 E-value=0.15 Score=52.07 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=15.8
Q ss_pred EEEEeCCCCCcHHHHHHHH
Q psy14500 459 SFMFLGPTGVGKTELCKTL 477 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~l 477 (938)
.+++.||+|||||++...+
T Consensus 78 ~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHH
Confidence 6999999999999765544
No 403
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.00 E-value=0.033 Score=60.64 Aligned_cols=108 Identities=13% Similarity=0.073 Sum_probs=0.0
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHH---------HHcCCCCCCcCCCeEEEEehhhhhc--------------------
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQR---------IINGEVPNSLLSKKILLLDIALLLA-------------------- 100 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~---------l~~~~~p~~~~~~~~~~~~~~~l~~-------------------- 100 (938)
+...-++|+||||+|||+++..++.. . +..++.++......
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~----------~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~ 189 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYP----------GGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLD 189 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBC----------CCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCC----------CCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHh
Q ss_pred -----CccccchHHHHHHHHHHHHHhc-CCCeEEEEeCccccccCCCCCC---------ccchhhhhhhhccCCceEEEE
Q psy14500 101 -----GTKYRGEFEDRLKKILKEISNN-QKDIIIFIDELHTMIGTGKVEG---------SIDAGNMLKPELSRGELHCIG 165 (938)
Q Consensus 101 -----~~~~~g~~~~~l~~~~~~a~~~-~~~~iL~iDEid~l~~~~~~~~---------~~~~~~~L~~~l~~~~i~vI~ 165 (938)
......+....+..+...+... .++.+|+||.+..+....-... -......|+.+....++.+|.
T Consensus 190 ~l~~~~~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l~~~l~~L~~la~~~~~~Vi~ 269 (343)
T 1v5w_A 190 NVLYARAYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKLAQMLSRLQKISEEYNVAVFV 269 (343)
T ss_dssp TEEEEECCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHHHHHHHHHHHHHHHHTCEEEE
T ss_pred ceeEeecCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHhCCEEEE
Q ss_pred ec
Q psy14500 166 AT 167 (938)
Q Consensus 166 ~t 167 (938)
+.
T Consensus 270 ~n 271 (343)
T 1v5w_A 270 TN 271 (343)
T ss_dssp EE
T ss_pred Ee
No 404
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.99 E-value=0.016 Score=58.83 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=21.5
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.|+|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 405
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.97 E-value=0.031 Score=59.10 Aligned_cols=39 Identities=15% Similarity=0.185 Sum_probs=28.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhcc--CCCceEEeccccc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFN--NEESIIRIDMSEF 496 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~--~~~~~~~~~~~~~ 496 (938)
+.++++||||+|||+|+-.++..... .+..++.++..+-
T Consensus 29 GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s 69 (333)
T 3io5_A 29 GLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFG 69 (333)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccch
Confidence 35899999999999998776655533 2567778887553
No 406
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.97 E-value=0.017 Score=57.16 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=25.5
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhccCCCceEEe
Q psy14500 460 FMFLGPTGVGKTELCKTLSACIFNNEESIIRI 491 (938)
Q Consensus 460 iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~ 491 (938)
+.|+|++|+||||+++.|++.+...+.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 78999999999999999999885445555543
No 407
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.89 E-value=0.015 Score=58.35 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=28.2
Q ss_pred HHHHHHHHHhc--CCCCCcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 39 EIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 39 ~~~~l~~~l~~--~~~~~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
.++++...+.. ....-+.|.||+|+|||||++.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44455554433 2233578899999999999999999884
No 408
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.88 E-value=0.023 Score=56.91 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIF 482 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~ 482 (938)
.++|+|+||+||||+|+.|++.+.
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999874
No 409
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=94.88 E-value=0.013 Score=58.74 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=22.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..|+|.|+||+||||+++.|++.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999988
No 410
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.88 E-value=0.017 Score=60.91 Aligned_cols=32 Identities=31% Similarity=0.576 Sum_probs=25.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 493 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 493 (938)
.+++.||+|+|||++|..||+.+ +..++..|-
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds 43 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL---PVELISVDS 43 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEECCT
T ss_pred EEEEECCCccCHHHHHHHHHHhC---CCcEEeccc
Confidence 57899999999999999999987 444554443
No 411
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.88 E-value=0.019 Score=58.45 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.7
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..+.|.||||+||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999998
No 412
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=94.87 E-value=0.055 Score=57.13 Aligned_cols=80 Identities=14% Similarity=0.196 Sum_probs=43.7
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-------Ccc-------ccchHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------GTK-------YRGEFEDRLKKILKEI 119 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~-------~~~-------~~g~~~~~l~~~~~~a 119 (938)
-++++||||+|||+|+..++....... .+.....++...-.. +.. .....++..-.+++.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 468999999999999887766553310 022333344321100 000 0112232202333333
Q ss_pred --HhcCCCeEEEEeCcccccc
Q psy14500 120 --SNNQKDIIIFIDELHTMIG 138 (938)
Q Consensus 120 --~~~~~~~iL~iDEid~l~~ 138 (938)
.+...+.+++||-+..|.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 2345688999999999975
No 413
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.86 E-value=0.018 Score=58.42 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=22.1
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..+.|.||+|+||||+++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999988
No 414
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.84 E-value=0.014 Score=57.03 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.4
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.-+.|+||+|+|||||++.|+..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 457899999999999999999875
No 415
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.82 E-value=0.016 Score=58.85 Aligned_cols=23 Identities=35% Similarity=0.781 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|+||||+||||+|+.|++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 416
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.82 E-value=0.019 Score=57.20 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|.|++|+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 48899999999999999999988
No 417
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.81 E-value=0.018 Score=58.60 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=26.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
.+.+.||||+|||++|+.|++.+ + +..++...+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g~~ 43 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTGAM 43 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCCcH
Confidence 68999999999999999999988 3 344554444
No 418
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.80 E-value=0.014 Score=58.24 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.++|++|+||||+++.|+. +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 588999999999999999998 5
No 419
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=94.78 E-value=0.023 Score=56.03 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=22.0
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHc
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRIIN 78 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~~ 78 (938)
.|.|.|+||+||||+++.|++.+..
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~ 26 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQ 26 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3789999999999999999998743
No 420
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.75 E-value=0.015 Score=62.23 Aligned_cols=31 Identities=32% Similarity=0.543 Sum_probs=25.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 492 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 492 (938)
.+++.||+|+|||+||..||+.+ +..++..|
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~D 72 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF---PLEVINSD 72 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS---CEEEEECC
T ss_pred eEEEECCCCCCHHHHHHHHHHHC---CCcEEccc
Confidence 68899999999999999999987 44555444
No 421
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.73 E-value=0.016 Score=59.95 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=23.0
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..+.|+||+|+||||+++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999887
No 422
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.73 E-value=0.035 Score=55.63 Aligned_cols=25 Identities=28% Similarity=0.441 Sum_probs=22.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIF 482 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~ 482 (938)
..+.+.||+|+||||+++.|+..+.
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3688999999999999999999884
No 423
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.73 E-value=0.037 Score=60.64 Aligned_cols=24 Identities=38% Similarity=0.556 Sum_probs=21.8
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.-++|.||+|+|||+|+..||+.+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 347889999999999999999998
No 424
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.72 E-value=0.023 Score=55.38 Aligned_cols=37 Identities=24% Similarity=0.246 Sum_probs=28.2
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~ 95 (938)
...+.|+|++|+||||+++.|+..+... +.+++.++.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~-------g~~~i~~d~ 41 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCH-------GIPCYTLDG 41 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhC-------CCcEEEECC
Confidence 3457899999999999999999987432 445665554
No 425
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.71 E-value=0.019 Score=56.71 Aligned_cols=34 Identities=18% Similarity=0.335 Sum_probs=26.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
.+.++|++||||||+|+.+++.+ +.+ .+|+..+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l---g~~--vid~D~~~ 47 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY---GAH--VVNVDRIG 47 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCE--EEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCE--EEECcHHH
Confidence 57899999999999999999987 444 45555553
No 426
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.70 E-value=0.019 Score=56.16 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|+||+|+||||+++.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 68899999999999999999875
No 427
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.69 E-value=0.079 Score=62.39 Aligned_cols=26 Identities=38% Similarity=0.621 Sum_probs=22.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
.+.+++.|+||||||+++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 46789999999999999998887775
No 428
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.68 E-value=0.024 Score=56.88 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=24.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCce
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESI 488 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~ 488 (938)
.++|+|+||+||||+|+.|++.+...+.++
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 689999999999999999999874434444
No 429
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=94.68 E-value=0.048 Score=61.70 Aligned_cols=25 Identities=28% Similarity=0.365 Sum_probs=21.2
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHc
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRIIN 78 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~~ 78 (938)
-++|.|+||+|||+++..+|.....
T Consensus 202 l~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 202 LNIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 3688899999999999999887643
No 430
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.68 E-value=0.016 Score=58.24 Aligned_cols=27 Identities=22% Similarity=0.196 Sum_probs=23.4
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHHHc
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRIIN 78 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l~~ 78 (938)
+..|+|.|+||+||||+++.|++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 346889999999999999999998743
No 431
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.65 E-value=0.016 Score=58.25 Aligned_cols=25 Identities=20% Similarity=0.128 Sum_probs=22.5
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
..|+|.|+||+||||+++.|++.+.
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578999999999999999999874
No 432
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.65 E-value=0.014 Score=58.36 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.5
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.|.|+|++|+||||+++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 578999999999999999998 6
No 433
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.65 E-value=0.016 Score=58.02 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.++|+||||+||||+++.|++.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58999999999999999999876
No 434
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.65 E-value=0.024 Score=56.97 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=28.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc-cCCCceEEeccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDMS 494 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~~ 494 (938)
.++|.|+||+||||+++.|++.+. ..+.+++.++..
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 688999999999999999999884 334456666643
No 435
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.64 E-value=0.017 Score=58.07 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+.-+.|+||+|+||||+++.|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457889999999999999999876
No 436
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.62 E-value=0.11 Score=55.92 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=26.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEe
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 491 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~ 491 (938)
..+.|.||+|+||||+++.|+..+...+..+...
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 4788999999999999999999885444444433
No 437
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.60 E-value=0.045 Score=54.41 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=49.2
Q ss_pred EEEEeCCCCCcHHH-HHHHHHHHhccCCCceEEeccc--cccchhhhhhhcCCCCCCccccccchhHHHHHhCCCEEEEE
Q psy14500 459 SFMFLGPTGVGKTE-LCKTLSACIFNNEESIIRIDMS--EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 535 (938)
Q Consensus 459 ~iLl~GppGtGKT~-lA~~la~~l~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~l 535 (938)
..+++||-|+|||+ +.+.+.++. ..+.....+... .-.....+..-.|......-......+...+ ..+..+|+|
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~I 107 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGI 107 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEE
Confidence 57899999999998 556654444 334444444321 1111111111112111100011111122212 234569999
Q ss_pred ccccccCHHHHHHHHHhhcC
Q psy14500 536 DEIEKANSDVFNILLQILDD 555 (938)
Q Consensus 536 DEid~~~~~~~~~Ll~~le~ 555 (938)
||+.-+++++.+.|..+.+.
T Consensus 108 DEaQFf~~~~v~~l~~la~~ 127 (219)
T 3e2i_A 108 DEVQFFDDEIVSIVEKLSAD 127 (219)
T ss_dssp CCGGGSCTHHHHHHHHHHHT
T ss_pred echhcCCHHHHHHHHHHHHC
Confidence 99999999988888887754
No 438
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.60 E-value=0.018 Score=56.91 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.3
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.|.|+|++||||||+++.+++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 47889999999999999999987
No 439
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.55 E-value=0.02 Score=57.03 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=22.0
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
...+.|+||+|+|||||++.|+..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568999999999999999999876
No 440
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=94.55 E-value=0.018 Score=60.28 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=38.7
Q ss_pred HHHHHHHHHhccc-CCccccccccccCCCCeeEe--hhHHHHHhcCCccEEEcCCChHH
Q psy14500 680 KSLSILLKKIHKK-SPEANFIFLGDLINKGPQSL--DTLRMVYSMRNYAKIVLGNHEIH 735 (938)
Q Consensus 680 ~~l~~~l~~~~~~-~~~~~li~~GD~~drg~~~~--~v~~~~~~~~~~~~~v~GNHe~~ 735 (938)
..+.++++.+.-. +..|.++++||+++.|+... .+.+.+.++.-.+++|+||||..
T Consensus 26 ~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD~~ 84 (274)
T 3d03_A 26 AANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDK 84 (274)
T ss_dssp HHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECCTTSCH
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCH
Confidence 6688888776543 24689999999999886421 33444444433478999999964
No 441
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.53 E-value=0.16 Score=57.79 Aligned_cols=41 Identities=27% Similarity=0.332 Sum_probs=31.8
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 497 (938)
...++|+|+||+||||++..||..+...+..+..+++..+.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 34799999999999999999998886556666666664443
No 442
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.52 E-value=0.022 Score=56.68 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHH
Q psy14500 459 SFMFLGPTGVGKTELCKTLSAC 480 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~ 480 (938)
.+.|+|++|+||||+|+.|++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6889999999999999999985
No 443
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=94.51 E-value=0.042 Score=58.46 Aligned_cols=128 Identities=19% Similarity=0.233 Sum_probs=0.0
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHh---------------------ccCCCceEEeccccccchhhhhhhcCCC----
Q psy14500 455 RPYGSFMFLGPTGVGKTELCKTLSACI---------------------FNNEESIIRIDMSEFIEKHSISRLIGAP---- 509 (938)
Q Consensus 455 ~~~~~iLl~GppGtGKT~lA~~la~~l---------------------~~~~~~~~~~~~~~~~~~~~~~~l~g~~---- 509 (938)
.+...+.|.||+|+|||||+++|+..+ .+....++.-+..-|...-...-.+|..
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~ 157 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGN 157 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCH
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCH
Q ss_pred -------------------------------CCCccccccchhHHHHHhCCCEEEEEccc-cccCHHHHHHHHHhhcCCc
Q psy14500 510 -------------------------------PGYIGYEEGGYLTEIVRRKPYSLILLDEI-EKANSDVFNILLQILDDGR 557 (938)
Q Consensus 510 -------------------------------~~~~g~~~~~~l~~~~~~~~~~vl~lDEi-d~~~~~~~~~Ll~~le~g~ 557 (938)
....|...++......-...+.||++||. -.+++.....++..|.+
T Consensus 158 ~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~-- 235 (306)
T 3nh6_A 158 DEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAK-- 235 (306)
T ss_dssp HHHHHHHHHHTCHHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhCcHHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHH--
Q ss_pred eecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhccChHHhhcCCeEEEcc
Q psy14500 558 LTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFR 622 (938)
Q Consensus 558 ~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~R~~~~i~f~ 622 (938)
-..+..+|+.|. +.+.+.++|.++.+.
T Consensus 236 ---------l~~~~Tvi~itH-----------------------------~l~~~~~aD~i~vl~ 262 (306)
T 3nh6_A 236 ---------VCANRTTIVVAH-----------------------------RLSTVVNADQILVIK 262 (306)
T ss_dssp ---------HHTTSEEEEECC-----------------------------SHHHHHTCSEEEEEE
T ss_pred ---------HcCCCEEEEEEc-----------------------------ChHHHHcCCEEEEEE
No 444
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.50 E-value=0.05 Score=58.72 Aligned_cols=80 Identities=18% Similarity=0.235 Sum_probs=0.0
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcC------CCeEEEEehhh-------------------------h
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL------SKKILLLDIAL-------------------------L 98 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~------~~~~~~~~~~~-------------------------l 98 (938)
+....++|+||||+|||+++..++... ... +..++.++... .
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~-------~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~ 177 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNV-------QLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIY 177 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHT-------TSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEE
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHH-------hcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEE
Q ss_pred hcCccccchHHHHHHHHHHHHHhcCCCeEEEEeCcccc
Q psy14500 99 LAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTM 136 (938)
Q Consensus 99 ~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l 136 (938)
........+....+..+...+....++.+|+||.+..+
T Consensus 178 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l 215 (324)
T 2z43_A 178 YIRAINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSH 215 (324)
T ss_dssp EEECCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHH
T ss_pred EEeCCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHH
No 445
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.47 E-value=0.019 Score=57.46 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q psy14500 459 SFMFLGPTGVGKTELCKTLSA 479 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~ 479 (938)
.+.|+||+|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999999987
No 446
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.47 E-value=0.062 Score=59.48 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=27.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhcc------CCCceEEecccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFN------NEESIIRIDMSE 495 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~------~~~~~~~~~~~~ 495 (938)
.++|+||||+|||+|++.++-.... .+...++++...
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 6899999999999999977644321 245677777665
No 447
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.46 E-value=0.024 Score=56.55 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.+.|++|+|||++|+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999999988
No 448
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.45 E-value=0.018 Score=56.77 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.1
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.++|+||+|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 46889999999999999998743
No 449
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.45 E-value=0.021 Score=56.41 Aligned_cols=26 Identities=35% Similarity=0.589 Sum_probs=22.4
Q ss_pred CCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 51 SKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 51 ~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
...-+.|+||+|+|||||++.|++..
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhC
Confidence 34557899999999999999999875
No 450
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.44 E-value=0.033 Score=57.76 Aligned_cols=39 Identities=18% Similarity=0.371 Sum_probs=28.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccC-----CCceEEecccccc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNN-----EESIIRIDMSEFI 497 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~-----~~~~~~~~~~~~~ 497 (938)
.+.++|++|+||||+|+.|++.+... +..+..+++.++.
T Consensus 24 iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 24 LIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 68899999999999999999987211 1123456665554
No 451
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.42 E-value=0.027 Score=56.56 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=24.6
Q ss_pred cCCCCCcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 49 RRSKNNPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 49 ~~~~~~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
...+..++|.|++|+||||+++.|++.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34445688999999999999999999884
No 452
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.40 E-value=0.017 Score=57.63 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.2
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..|.|.|++|+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468899999999999999999876
No 453
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.39 E-value=0.043 Score=54.66 Aligned_cols=23 Identities=22% Similarity=0.125 Sum_probs=19.2
Q ss_pred EEEcCCCChHHHHHHHHHHHHHc
Q psy14500 56 VLIGEPGVGKTAIVEGLAQRIIN 78 (938)
Q Consensus 56 LL~Gp~GtGKT~la~~la~~l~~ 78 (938)
+++||.|+||||.+-.++.+...
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~ 54 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQF 54 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHH
T ss_pred EEECCCCCcHHHHHHHHHHHHHH
Confidence 57899999999998888877644
No 454
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.37 E-value=0.25 Score=63.67 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=36.8
Q ss_pred ccccChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHH
Q psy14500 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSAC 480 (938)
Q Consensus 427 ~~viGq~~~~~~l~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~lA~~la~~ 480 (938)
..++|.+..++.|...+.... .....+.++|+.|+|||+||+.+++.
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~-------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLN-------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTT-------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred ceeccHHHHHHHHHHHHhhcc-------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 458899999999999886332 11236889999999999999888764
No 455
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.37 E-value=0.02 Score=56.55 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.8
Q ss_pred cEEEcCCCChHHHHHHHHHHHHHc
Q psy14500 55 PVLIGEPGVGKTAIVEGLAQRIIN 78 (938)
Q Consensus 55 vLL~Gp~GtGKT~la~~la~~l~~ 78 (938)
|.|.|++|+||||+++.|++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999998854
No 456
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.37 E-value=0.053 Score=57.76 Aligned_cols=40 Identities=25% Similarity=0.423 Sum_probs=31.1
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
...++|+||+|+||||++..||..+...+..+..+++..+
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 3478899999999999999999988555556666665443
No 457
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.37 E-value=0.02 Score=57.08 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.0
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..+.|+||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3567899999999999999999865
No 458
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.36 E-value=0.16 Score=52.34 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.2
Q ss_pred CCCcEEEcCCCChHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQ 74 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~ 74 (938)
.-+|+|+|.||+|||||+.++..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhC
Confidence 35689999999999999998875
No 459
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.36 E-value=0.13 Score=57.04 Aligned_cols=90 Identities=17% Similarity=0.152 Sum_probs=48.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhhhhhhcCCCCCCccc--cccchhHHHHHh-C-----C
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGY--EEGGYLTEIVRR-K-----P 529 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~--~~~~~l~~~~~~-~-----~ 529 (938)
...++.|+||||||++...++.. .+...+-...-.. ....+-+... +.... ....-+..++.. . +
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~-----~~~lVlTpT~~aa-~~l~~kl~~~-~~~~~~~~~V~T~dsfL~~~~~~~~~~ 234 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF-----EEDLILVPGRQAA-EMIRRRANAS-GIIVATKDNVRTVDSFLMNYGKGARCQ 234 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT-----TTCEEEESCHHHH-HHHHHHHTTT-SCCCCCTTTEEEHHHHHHTTTSSCCCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc-----CCeEEEeCCHHHH-HHHHHHhhhc-CccccccceEEEeHHhhcCCCCCCCCc
Confidence 36789999999999998766532 1222221111111 1111111110 11000 011223333322 2 1
Q ss_pred CEEEEEccccccCHHHHHHHHHhhc
Q psy14500 530 YSLILLDEIEKANSDVFNILLQILD 554 (938)
Q Consensus 530 ~~vl~lDEid~~~~~~~~~Ll~~le 554 (938)
..+|+|||+-.+++.....++..+.
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~ 259 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL 259 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC
Confidence 5799999999999999999888764
No 460
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.31 E-value=0.023 Score=56.97 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|+||+|+||||+++.|+..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999999876
No 461
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=94.29 E-value=0.15 Score=54.89 Aligned_cols=147 Identities=16% Similarity=0.131 Sum_probs=0.0
Q ss_pred hHHHHHhhhHHHHHh--cCCCCCccccHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14500 12 GYLKKYTIDLTEKAR--LGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 89 (938)
Q Consensus 12 ~~~~~~~~~l~~~~~--~~~~~~lvG~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~ 89 (938)
..+...-..+.+.+. .+.+..+--.-..+..+.. .-.+..-++|.|+||+|||+++..+|..+... +.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~gi~TG~~~LD~~~g--Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~-------g~~ 76 (338)
T 4a1f_A 6 EVLESAMDLITENQRKGSLEVTGIPTGFVQLDNYTS--GFNKGSLVIIGARPSMGKTSLMMNMVLSALND-------DRG 76 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTTCCCSBCCSCHHHHHHHC--SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHT-------TCE
T ss_pred HHHHHHHHHHHHHHhcCCCCcCcccCCChHHHHHhc--CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc-------CCe
Q ss_pred EEEEeh--------hhh------------------------------------hcCccccchHHHHHHHHHHHHHhcC-C
Q psy14500 90 ILLLDI--------ALL------------------------------------LAGTKYRGEFEDRLKKILKEISNNQ-K 124 (938)
Q Consensus 90 ~~~~~~--------~~l------------------------------------~~~~~~~g~~~~~l~~~~~~a~~~~-~ 124 (938)
+..+++ ..+ ..-....+.....+...+..+.... +
T Consensus 77 Vl~fSlEms~~ql~~Rlls~~~~v~~~~l~~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~~i~~~ir~l~~~~gg 156 (338)
T 4a1f_A 77 VAVFSLEMSAEQLALRALSDLTSINMHDLESGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIEQIRLQLRKLKSQHKE 156 (338)
T ss_dssp EEEEESSSCHHHHHHHHHHHHHCCCHHHHHHTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHHHHHHHHHHHHHHCTT
T ss_pred EEEEeCCCCHHHHHHHHHHHhhCCCHHHHhcCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHHHHHHHHHHHHHhcCC
Q ss_pred CeEEEEeCcccccc----CCCCCCccchhhhhhhhccCCceEEEEec
Q psy14500 125 DIIIFIDELHTMIG----TGKVEGSIDAGNMLKPELSRGELHCIGAT 167 (938)
Q Consensus 125 ~~iL~iDEid~l~~----~~~~~~~~~~~~~L~~~l~~~~i~vI~~t 167 (938)
..++|||-+..|.. ......-.++...|+.+-..-++.+|+.+
T Consensus 157 ~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~ls 203 (338)
T 4a1f_A 157 LGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALV 203 (338)
T ss_dssp EEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred CCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEE
No 462
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.27 E-value=0.11 Score=54.92 Aligned_cols=96 Identities=16% Similarity=0.238 Sum_probs=53.6
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhh-----hhhhcCCCCCCc---cccccchhHHHH---H
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS-----ISRLIGAPPGYI---GYEEGGYLTEIV---R 526 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~-----~~~l~g~~~~~~---g~~~~~~l~~~~---~ 526 (938)
..+.++|++|+|||+++..||..+...+..+..+++........ .....|-+. +. +.+........+ .
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~-~~~~~~~~p~~l~~~~l~~~~ 177 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPV-LEVMDGESPESIRRRVEEKAR 177 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCE-EECCTTCCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEE-EEcCCCCCHHHHHHHHHHHHH
Confidence 46888999999999999999998865566666666644322110 011112110 10 111111112222 2
Q ss_pred hCCCEEEEEccccccC--HHHHHHHHHhhc
Q psy14500 527 RKPYSLILLDEIEKAN--SDVFNILLQILD 554 (938)
Q Consensus 527 ~~~~~vl~lDEid~~~--~~~~~~Ll~~le 554 (938)
...+.+|+||+.-..+ ....+.+..+.+
T Consensus 178 ~~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 178 LEARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp HHTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 2456899999985543 355566555544
No 463
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.26 E-value=0.021 Score=56.05 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.8
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRII 77 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l~ 77 (938)
.-+.|.||+|+||||+++.|+..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998763
No 464
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.26 E-value=0.022 Score=61.21 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.6
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.|+|.||+|+||||+|..||+.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 57899999999999999999988
No 465
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.25 E-value=0.027 Score=56.11 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=25.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 492 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 492 (938)
.+.|+|++|+||||+++.|++.+ .+.+++.++
T Consensus 6 ~I~l~G~~GsGKsT~~~~L~~~l--~g~~~~~~~ 37 (204)
T 2v54_A 6 LIVFEGLDKSGKTTQCMNIMESI--PANTIKYLN 37 (204)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTS--CGGGEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH--CCCceEEEe
Confidence 68999999999999999999987 234555544
No 466
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.22 E-value=0.024 Score=56.42 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.3
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.-+.|+||+|+||||+++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 457889999999999999999875
No 467
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.22 E-value=0.031 Score=55.80 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=21.7
Q ss_pred CcEEEcCCCChHHHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.+.|.|++|+||||+++.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57899999999999999999988
No 468
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.15 E-value=0.025 Score=56.46 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|+||+|+||||+++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 68899999999999999999876
No 469
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.14 E-value=0.033 Score=57.75 Aligned_cols=25 Identities=24% Similarity=0.396 Sum_probs=22.5
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
...+.|.||+|+||||+++.|++.+
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhc
Confidence 3458899999999999999999988
No 470
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.13 E-value=0.026 Score=55.54 Aligned_cols=23 Identities=43% Similarity=0.902 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|.||+|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 57899999999999999998744
No 471
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=94.12 E-value=0.041 Score=61.64 Aligned_cols=24 Identities=25% Similarity=0.425 Sum_probs=21.2
Q ss_pred CCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
.-|+|+|+||+||||+++.+++.+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHhc
Confidence 347888999999999999999876
No 472
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.09 E-value=0.029 Score=59.31 Aligned_cols=23 Identities=35% Similarity=0.522 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+++.||+|+|||++|..||+.+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT
T ss_pred EEEEECCCcCCHHHHHHHHHHhC
Confidence 57899999999999999999987
No 473
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.08 E-value=0.03 Score=60.21 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+++.||+|+|||++|+.||+.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 58899999999999999999988
No 474
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.07 E-value=0.028 Score=58.03 Aligned_cols=23 Identities=30% Similarity=0.726 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|.||+|+||||+++.|++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999887
No 475
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.06 E-value=0.019 Score=57.45 Aligned_cols=21 Identities=33% Similarity=0.340 Sum_probs=19.3
Q ss_pred CcEEEcCCCChHHHHHHHHHH
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQ 74 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~ 74 (938)
.+.|.||+|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 476
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.03 E-value=0.034 Score=60.99 Aligned_cols=96 Identities=15% Similarity=0.171 Sum_probs=52.9
Q ss_pred CCCCCcEEEcCCCChHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccchHHHHHHHHHHHHHhcCCCeEEE
Q psy14500 50 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 129 (938)
Q Consensus 50 ~~~~~vLL~Gp~GtGKT~la~~la~~l~~~~~p~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~ 129 (938)
+.+..++|+||||+||||++++++..+ +..++.+.... . .+ ...+.. .....+++
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~----------~g~~~~~~~~~-----~---~~----~~~lg~---~~q~~~~l 221 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC----------GGKALNVNLPL-----D---RL----NFELGV---AIDQFLVV 221 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH----------CCEEECCSSCT-----T---TH----HHHHGG---GTTCSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc----------CCcEEEEeccc-----h---hH----HHHHHH---hcchhHHH
Confidence 444578999999999999999999876 33443222110 0 00 101111 12345789
Q ss_pred EeCcccccc-CCCCCCccc--hhhhhhhhccCCceEEEEecChhH
Q psy14500 130 IDELHTMIG-TGKVEGSID--AGNMLKPELSRGELHCIGATTLNE 171 (938)
Q Consensus 130 iDEid~l~~-~~~~~~~~~--~~~~L~~~l~~~~i~vI~~tn~~~ 171 (938)
+||++.+.. .+....... ....+...+. |.+.++.+||+++
T Consensus 222 ~dd~~~~~~~~r~l~~~~~~~~~~~l~~~ld-G~v~v~~~tn~~~ 265 (377)
T 1svm_A 222 FEDVKGTGGESRDLPSGQGINNLDNLRDYLD-GSVKVNLEKKHLN 265 (377)
T ss_dssp ETTCCCSTTTTTTCCCCSHHHHHHTTHHHHH-CSSCEEECCSSSC
T ss_pred HHHHHHHHHHHhhccccCcchHHHHHHHHhc-CCCeEeeccCchh
Confidence 999998764 111100011 1133444443 3456677787776
No 477
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.03 E-value=0.033 Score=55.06 Aligned_cols=23 Identities=22% Similarity=0.561 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|.||+|+|||+|+++|....
T Consensus 21 ~ivl~GPSGaGKsTL~~~L~~~~ 43 (197)
T 3ney_A 21 TLVLIGASGVGRSHIKNALLSQN 43 (197)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 68899999999999999999765
No 478
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.01 E-value=0.23 Score=49.17 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=18.3
Q ss_pred CCcEEEcCCCChHHHHHH-HHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVE-GLAQRI 76 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~-~la~~l 76 (938)
.++++.+|+|+|||..+- .+...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHH
Confidence 689999999999998744 344443
No 479
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=93.99 E-value=0.077 Score=56.08 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=22.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIF 482 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~ 482 (938)
.+.+.||+|+||||+|+.|+..+.
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 688999999999999999999884
No 480
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=93.98 E-value=0.031 Score=58.98 Aligned_cols=21 Identities=24% Similarity=0.449 Sum_probs=19.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q psy14500 459 SFMFLGPTGVGKTELCKTLSA 479 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~ 479 (938)
.+.|+|++|+||||+|+.|+.
T Consensus 77 iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999994
No 481
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=93.97 E-value=0.031 Score=55.62 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|.||+|+||||+++.|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999999875
No 482
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=93.97 E-value=0.094 Score=55.76 Aligned_cols=32 Identities=25% Similarity=0.368 Sum_probs=25.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceE
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESII 489 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~ 489 (938)
..+.|.||+|+||||+++.||..+...+..+.
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~ 132 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVL 132 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 47889999999999999999998854444443
No 483
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=93.96 E-value=0.37 Score=54.78 Aligned_cols=71 Identities=15% Similarity=0.188 Sum_probs=44.6
Q ss_pred EEEEEccccccC----HHHHHHHHHhhcCCceecCCCceeecCCeEEEEecCCCchhhhhhhcchHHHHHHHHHHHHhhc
Q psy14500 531 SLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIY 606 (938)
Q Consensus 531 ~vl~lDEid~~~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 606 (938)
-+|+|||+..+- ..+.+.|..+...|+ .....+|++|..+... .
T Consensus 299 ivlvIDE~~~ll~~~~~~~~~~l~~Lar~gR----------a~GI~LIlaTQrp~~d----------------------v 346 (512)
T 2ius_A 299 IVVLVDEFADLMMTVGKKVEELIARLAQKAR----------AAGIHLVLATQRPSVD----------------------V 346 (512)
T ss_dssp EEEEEETHHHHHHHHHHHHHHHHHHHHHHCG----------GGTEEEEEEESCCCTT----------------------T
T ss_pred EEEEEeCHHHHHhhhhHHHHHHHHHHHHHhh----------hCCcEEEEEecCCccc----------------------c
Confidence 489999996443 234444444444432 2234566777765421 2
Q ss_pred cChHHhhcCCeEEEccCCCHHHHHHHH
Q psy14500 607 FRPEFINRIDDIIVFRYLNRKNILSIA 633 (938)
Q Consensus 607 ~~~~l~~R~~~~i~f~~l~~e~~~~i~ 633 (938)
++..+.+-+...|.|.-.+..+...|+
T Consensus 347 l~~~i~~n~~~RI~lrv~s~~dsr~il 373 (512)
T 2ius_A 347 ITGLIKANIPTRIAFTVSSKIDSRTIL 373 (512)
T ss_dssp SCHHHHHHCCEEEEECCSSHHHHHHHH
T ss_pred ccHHHHhhcCCeEEEEcCCHHHHHHhc
Confidence 455677778778889988988888774
No 484
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=93.92 E-value=0.064 Score=57.12 Aligned_cols=33 Identities=24% Similarity=0.318 Sum_probs=26.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14500 458 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 490 (938)
Q Consensus 458 ~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~ 490 (938)
..+.|.||+|+||||+++.||..+...+..+..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l 135 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMF 135 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 378899999999999999999988544444433
No 485
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=93.88 E-value=0.039 Score=57.18 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.2
Q ss_pred CCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 52 ~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
+..|.|.|++|+||||+|+.|++.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999987
No 486
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.88 E-value=0.036 Score=60.75 Aligned_cols=23 Identities=35% Similarity=0.561 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+++.||+|+|||++|..||+.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 58899999999999999999988
No 487
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=93.88 E-value=0.029 Score=54.93 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
+++|+||||+|||+|++.|.+..
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999987664
No 488
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=93.86 E-value=0.054 Score=51.99 Aligned_cols=34 Identities=18% Similarity=0.195 Sum_probs=27.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 492 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 492 (938)
.+.|.|++|+|||+++..|+..+...+..+..+.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 6889999999999999999998855555554444
No 489
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.86 E-value=0.16 Score=47.92 Aligned_cols=23 Identities=30% Similarity=0.515 Sum_probs=20.2
Q ss_pred CCcEEEcCCCChHHHHHHHHHHH
Q psy14500 53 NNPVLIGEPGVGKTAIVEGLAQR 75 (938)
Q Consensus 53 ~~vLL~Gp~GtGKT~la~~la~~ 75 (938)
-+|+++|++|+|||||+..+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999988764
No 490
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=93.84 E-value=0.051 Score=61.23 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.1
Q ss_pred CcEEEcCCCChHHHHHHHHHHHHHc
Q psy14500 54 NPVLIGEPGVGKTAIVEGLAQRIIN 78 (938)
Q Consensus 54 ~vLL~Gp~GtGKT~la~~la~~l~~ 78 (938)
-++|.|+||+|||+++..+|.....
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHH
Confidence 3688899999999999998876643
No 491
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=93.83 E-value=0.032 Score=55.80 Aligned_cols=36 Identities=28% Similarity=0.241 Sum_probs=26.6
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 496 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 496 (938)
...+.++|+||+||||+|+.|+..+. .+..++...+
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~----~~~~i~~D~~ 56 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLP----NCSVISQDDF 56 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTST----TEEEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcC----CcEEEeCCcc
Confidence 34688999999999999999997641 3445555444
No 492
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=93.82 E-value=0.14 Score=55.61 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=26.7
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14500 457 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 490 (938)
Q Consensus 457 ~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~ 490 (938)
...++|.||+|+||||+++.||..+...+..+..
T Consensus 157 g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l 190 (359)
T 2og2_A 157 PAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 190 (359)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CeEEEEEcCCCChHHHHHHHHHhhccccCCEEEE
Confidence 3478899999999999999999988544444433
No 493
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=93.71 E-value=0.11 Score=55.43 Aligned_cols=24 Identities=25% Similarity=0.336 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACIF 482 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l~ 482 (938)
.+.|.||+|+||||+++.|+..+.
T Consensus 94 iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 94 IIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 678999999999999999998873
No 494
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=93.67 E-value=0.049 Score=56.38 Aligned_cols=23 Identities=39% Similarity=0.780 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|.||+|+||||+++.|++.+
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 68899999999999999999888
No 495
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=93.64 E-value=0.035 Score=55.18 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|.||+|+||||+++.|...+
T Consensus 6 ~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 6 PVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58999999999999999999876
No 496
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=93.62 E-value=0.16 Score=60.50 Aligned_cols=30 Identities=13% Similarity=0.093 Sum_probs=22.8
Q ss_pred EEEEEccccccCHHHHHHHHHhhcCCceec
Q psy14500 531 SLILLDEIEKANSDVFNILLQILDDGRLTD 560 (938)
Q Consensus 531 ~vl~lDEid~~~~~~~~~Ll~~le~g~~~~ 560 (938)
.+..|+.=-+|++.+.+.-...+-+|++..
T Consensus 432 ~v~~L~~qYRmhp~I~~f~n~~fY~g~L~~ 461 (646)
T 4b3f_X 432 VVRTLTVQYRMHQAIMRWASDTMYLGQLTA 461 (646)
T ss_dssp TEEECCEESSSCHHHHHHHHHHHSTTCCEE
T ss_pred eeeecccccCCcHHHHhhhHHhhcCCcccc
Confidence 366788778899998888888777776653
No 497
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=93.62 E-value=0.038 Score=55.76 Aligned_cols=21 Identities=19% Similarity=0.414 Sum_probs=20.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q psy14500 459 SFMFLGPTGVGKTELCKTLSA 479 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~ 479 (938)
.+.|+|++|+||||+++.|++
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 688999999999999999998
No 498
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=93.62 E-value=0.032 Score=54.74 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14500 459 SFMFLGPTGVGKTELCKTLSACI 481 (938)
Q Consensus 459 ~iLl~GppGtGKT~lA~~la~~l 481 (938)
.+.|.||+|+||||+++.|+..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 47899999999999999999876
No 499
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.60 E-value=0.036 Score=55.96 Aligned_cols=41 Identities=22% Similarity=0.340 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHhcCCCCCcEEEcCCCChHHHHHHHHHHHH
Q psy14500 36 RDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRI 76 (938)
Q Consensus 36 ~~~~~~~l~~~l~~~~~~~vLL~Gp~GtGKT~la~~la~~l 76 (938)
..+..+.+...+.......++|+|++|+||||++..++..+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 14 NKRLAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp HHHHHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 34455555555555566789999999999999999999876
No 500
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=93.60 E-value=0.049 Score=55.76 Aligned_cols=37 Identities=16% Similarity=0.292 Sum_probs=0.0
Q ss_pred CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14500 452 DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 492 (938)
Q Consensus 452 ~~~~~~~~iLl~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 492 (938)
++.++. .+.|.|++|+|||++++.|++.+ +.+++..+
T Consensus 12 ~~~~~~-~i~i~G~~gsGKst~~~~l~~~l---g~~~~d~d 48 (236)
T 1q3t_A 12 DKMKTI-QIAIDGPASSGKSTVAKIIAKDF---GFTYLDTG 48 (236)
T ss_dssp --CCCC-EEEEECSSCSSHHHHHHHHHHHH---CCEEEEHH
T ss_pred cccCCc-EEEEECCCCCCHHHHHHHHHHHc---CCceecCC
Done!