RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14500
(938 letters)
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A
{Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20
c.37.1.20
Length = 854
Score = 1159 bits (3000), Expect = 0.0
Identities = 383/662 (57%), Positives = 514/662 (77%), Gaps = 10/662 (1%)
Query: 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLA 73
L++Y IDLT A GKLDPVIGRD+EIRR IQ+L RR+KNNPVLIGEPGVGKTAIVEGLA
Sbjct: 153 LEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLA 212
Query: 74 QRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 133
QRI+ G+VP L K+I+ L + LLAG KYRGEFE+RLK +++E+ +Q ++I+FIDEL
Sbjct: 213 QRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDEL 272
Query: 134 HTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEE 193
HT++G GK EG++DAGNMLKP L+RGEL IGATTL+EYR+ IEKD A ERRFQ + V+E
Sbjct: 273 HTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEKDPALERRFQPVYVDE 331
Query: 194 PDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 253
P +EETISILRGL++KYEVHHGV I+D AI+AA+ LS+RYI++R +PDKAIDLIDEAAA+
Sbjct: 332 PTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAAR 391
Query: 254 IKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEK 313
+++ ++S PE +D LER+ +QL+IE EA+K+E D S++RL I+ EI KL + A L
Sbjct: 392 LRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRA 451
Query: 314 IWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKD 373
W+ E+ +++ ++ + +++VR +I A R+ D ++L+YGEL KLE ++ S+K
Sbjct: 452 EWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEKL 511
Query: 374 IQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQD 433
++ +V E+IAEIVSR TGIPVSK+++ EREKLL +E L KRVVGQD
Sbjct: 512 -------RGARFVRLEVTEEDIAEIVSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQD 564
Query: 434 EAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 493
EAI AV++AIRR+R+GL D RP GSF+FLGPTGVGKTEL KTL+A +F+ EE++IRIDM
Sbjct: 565 EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624
Query: 494 SEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQIL 553
+E++EKH++SRLIGAPPGY+GYEEGG LTE VRR+PYS+IL DEIEKA+ DVFNILLQIL
Sbjct: 625 TEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQIL 684
Query: 554 DDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM--EKGDKEIIKLAVMNEVKIYFRPEF 611
DDGRLTD+ GRT++FRNT+I++TSNLGS I E + E I+ V ++ +FRPEF
Sbjct: 685 DDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEF 744
Query: 612 INRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYG 671
+NR+D+I+VFR L ++ I I IQL+ L+ +L + + L++++AA ++ G+D ++G
Sbjct: 745 LNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFG 804
Query: 672 AR 673
AR
Sbjct: 805 AR 806
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 6.93A {Bacillus subtilis}
Length = 758
Score = 878 bits (2271), Expect = 0.0
Identities = 314/660 (47%), Positives = 422/660 (63%), Gaps = 111/660 (16%)
Query: 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLA 73
L DLT A+ LDPVIGR EI+R I+VL RR+KNNPVLIGEPGVGKTAI EGLA
Sbjct: 163 LDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLA 222
Query: 74 QRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 133
Q+IIN EVP L K+++ LD+ GTKYRGEFEDRLKK++ EI +II+FID
Sbjct: 223 QQIINNEVPEILRDKRVMTLDM-----GTKYRGEFEDRLKKVMDEIRQA-GNIILFID-- 274
Query: 134 HTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEE 193
+IDA N+LKP L+RGEL CIGATTL+EYR+YIEKDAA ERRFQ I V++
Sbjct: 275 ----------AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQ 324
Query: 194 PDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 253
P ++E+I IL+GL+ +YE HH V ITD AI AA +LS RYISDRF+PDKAIDLIDEA +K
Sbjct: 325 PSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384
Query: 254 IKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEK 313
+++ + P + +LE++L +++ E +A + +
Sbjct: 385 VRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQE-------------------------- 418
Query: 314 IWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKD 373
+EK + +++ +++R ++ K W+ +
Sbjct: 419 ---FEK-----AASLRDTEQRLREQVEDT--KKSWKEKQGQE------------------ 450
Query: 374 IQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQD 433
++V ++IA +VS TG+PVSKI Q E +KLLN+EN+L RV+GQD
Sbjct: 451 -------------NSEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQD 497
Query: 434 EAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 493
EA+ AV+ A+RR+R+GL D KRP GSF+FLGPTGVGKTEL + L+ IF +EES+IRIDM
Sbjct: 498 EAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDM 557
Query: 494 SEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQIL 553
SE++EKHS S GG LTE VRRKPYS++LLD IEKA+ DVFNILLQ+L
Sbjct: 558 SEYMEKHSTS--------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVL 603
Query: 554 DDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN 613
+DGRLTD++GRT++FRNTI++MTSN+G+ K VM E+K FRPEFIN
Sbjct: 604 EDGRLTDSKGRTVDFRNTILIMTSNVGAS------------EKDKVMGELKRAFRPEFIN 651
Query: 614 RIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGAR 673
RID+IIVF L +K++ I ++ + L +L + ++ ++++ AA K++ G DL YGAR
Sbjct: 652 RIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGAR 711
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB,
proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR
binding; 3.65A {Bacillus subtilis}
Length = 468
Score = 493 bits (1271), Expect = e-166
Identities = 163/322 (50%), Positives = 216/322 (67%), Gaps = 22/322 (6%)
Query: 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLA 73
L DLT A+ LDPVIGR EI+R I+VL RR+KNNPVLIGEPGVGKTAI EGLA
Sbjct: 163 LDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLA 222
Query: 74 QRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 133
Q+IIN EVP L K+++ LD+ GTKYRGEFEDRLKK++ EI +II+FID
Sbjct: 223 QQIINNEVPEILRDKRVMTLDM-----GTKYRGEFEDRLKKVMDEIRQA-GNIILFID-- 274
Query: 134 HTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEE 193
+IDA N+LKP L+RGEL CIGATTL+EYR+YIEKDAA ERRFQ I V++
Sbjct: 275 ----------AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQ 324
Query: 194 PDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 253
P ++E+I IL+GL+ +YE HH V ITD AI AA +LS RYISDRF+PDKAIDLIDEA +K
Sbjct: 325 PSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSK 384
Query: 254 IKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEK 313
+++ + P + +LE++L +++ E +A + + L + +L + + +K
Sbjct: 385 VRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASL---RDTEQRLREQVEDTKK 441
Query: 314 IWKYEKTLIKDSQQIKEEIEKV 335
WK ++ S+ ++I V
Sbjct: 442 SWKEKQGQEN-SEVTVDDIAMV 462
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 471 bits (1214), Expect = e-160
Identities = 156/264 (59%), Positives = 208/264 (78%), Gaps = 2/264 (0%)
Query: 412 QVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKT 471
EREKLL +E L KRVVGQDEAI AV++AIRR+R+GL D RP GSF+FLGPTGVGKT
Sbjct: 2 LGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKT 61
Query: 472 ELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYS 531
EL KTL+A +F+ EE++IRIDM+E++EKH++SRLIGAPPGY+GYEEGG LTE VRR+PYS
Sbjct: 62 ELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYS 121
Query: 532 LILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM--EK 589
+IL D IEKA+ DVFNILLQ+LDDGRLTD+ GRT++FRNT+I+MTSNLGS I E +
Sbjct: 122 VILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIMTSNLGSPLILEGLQKG 181
Query: 590 GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNM 649
E I+ V ++ +FRPEF+NR+D+I+VFR L ++ I I IQ++ L+ +L + +
Sbjct: 182 WPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRI 241
Query: 650 DLKISKAALKKISNIGFDLIYGAR 673
L++++AA ++ G+D ++GAR
Sbjct: 242 SLELTEAAKDFLAERGYDPVFGAR 265
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 450 bits (1159), Expect = e-146
Identities = 134/249 (53%), Positives = 177/249 (71%), Gaps = 2/249 (0%)
Query: 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLA 73
L+ +T +L + AR+G +DP+IGR+ E+ RAIQVL RR KNNP+L+GE GVGKTAI EGLA
Sbjct: 169 LENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA 228
Query: 74 QRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 133
RI+ G+VP + I LDI LLAGTKYRG+FE R K +LK++ + + I+FIDE+
Sbjct: 229 WRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSILFIDEI 287
Query: 134 HTMIGTGKVEG-SIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVE 192
HT+IG G G +DA N++KP LS G++ IG+TT E+ EKD A RRFQKI +
Sbjct: 288 HTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDIT 347
Query: 193 EPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252
EP IEET+ I+ GL+ KYE HH V T A+ AA EL+ +YI+DR +PDKAID+IDEA A
Sbjct: 348 EPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 407
Query: 253 KIKIEIDSK 261
+ ++ SK
Sbjct: 408 RARLMPVSK 416
Score = 433 bits (1115), Expect = e-139
Identities = 122/288 (42%), Positives = 186/288 (64%), Gaps = 4/288 (1%)
Query: 387 KTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRS 446
K V +I +V+R IP + Q +R+ L N+ + L V GQD+AI A++ AI+ +
Sbjct: 418 KKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA 477
Query: 447 RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 506
R+GL +P GSF+F GPTGVGKTE+ LS + ++R DMSE++E+H++SRLI
Sbjct: 478 RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRFDMSEYMERHTVSRLI 534
Query: 507 GAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 566
GAPPGY+G+++GG LT+ V + P++++LLDEIEKA+ DVFNILLQ++D+G LTDN GR
Sbjct: 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKA 594
Query: 567 NFRNTIIVMTSNLGSDKIKEMEKG-DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN 625
+FRN ++VMT+N G + + G + M E+K F PEF NR+D+II F +L+
Sbjct: 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLS 654
Query: 626 RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGAR 673
I + + + L+ +L + + L++S+ A ++ G+D GAR
Sbjct: 655 TDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGAR 702
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli}
SCOP: c.37.1.20
Length = 195
Score = 365 bits (940), Expect = e-121
Identities = 140/191 (73%), Positives = 168/191 (87%)
Query: 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLA 73
LKKYTIDLTE+A GKLDPVIGRD+EIRR IQVLQRR+KNNPVLIGEPGVGKTAIVEGLA
Sbjct: 5 LKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLA 64
Query: 74 QRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 133
QRIINGEVP L +++L LD+ L+AG KYRGEFE+RLK +L +++ + ++I+FIDEL
Sbjct: 65 QRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDEL 124
Query: 134 HTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEE 193
HTM+G GK +G++DAGNMLKP L+RGELHC+GATTL+EYRQYIEKDAA ERRFQK+ V E
Sbjct: 125 HTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAE 184
Query: 194 PDIEETISILR 204
P +E+TI+ILR
Sbjct: 185 PSVEDTIAILR 195
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics,
structural genomics consortium, SGC, unknown function;
1.70A {Plasmodium falciparum}
Length = 187
Score = 342 bits (878), Expect = e-112
Identities = 120/182 (65%), Positives = 157/182 (86%), Gaps = 1/182 (0%)
Query: 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLA 73
L+KY+ DLT AR GKLDPVIGRD EIRRAIQ+L RR+KNNP+L+G+PGVGKTAIVEGLA
Sbjct: 5 LEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLA 64
Query: 74 QRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 133
+I+ G+VP+SL +K++ LD++ L+AG KYRG+FE+RLK ILKE+ + + +++FIDE+
Sbjct: 65 IKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEI 124
Query: 134 HTMIGTGKV-EGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVE 192
HT++G G V EG++DAGN+LKP L+RGEL CIGATT++EYRQ+IEKD A ERRFQ+ILVE
Sbjct: 125 HTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALERRFQQILVE 184
Query: 193 EP 194
+P
Sbjct: 185 QP 186
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture,
hydrolase; 2.72A {Shigella flexneri 2A}
Length = 280
Score = 250 bits (638), Expect = 3e-76
Identities = 93/265 (35%), Positives = 131/265 (49%), Gaps = 9/265 (3%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHE 733
DVHGC L LL K+ + GDL+ +GP SLD LR V S+ + ++VLGNH+
Sbjct: 8 DVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHD 67
Query: 734 IHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY--KKYLMIHAGVAKQW 791
+HLL V I++ D +L+APD +L++WLR QPL KK +M HAG+ QW
Sbjct: 68 LHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQW 127
Query: 792 TAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTR 851
Q + + VE +L + + +Y NW L + +L+FI N TR
Sbjct: 128 DLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNWSPELR-----GLGRLRFITNAFTR 182
Query: 852 TRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL-GLIMKPNII 910
RFC +G ++ K PWF +P + ++ FGHW++L G I
Sbjct: 183 MRFCFPNGQLDMYSKE-SPEEAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIY 241
Query: 911 CLDTGCVWGNKLTALCLEDRSIIQV 935
LDTGC WG LT L ED+
Sbjct: 242 ALDTGCCWGGSLTCLRWEDKQYFVQ 266
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 245 bits (626), Expect = 2e-73
Identities = 45/265 (16%), Positives = 91/265 (34%), Gaps = 34/265 (12%)
Query: 33 VIGRDDEIRRAIQVLQRRSKNN----PVLIGEPGVGKTAIVEGLAQRII----------- 77
++ +Q+L R ++N +L+G PG GK+ I E L Q I
Sbjct: 1 MVDTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQIINEKYHTFLSEHP 60
Query: 78 ------NGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFID 131
+ P L + L + + +G F+D ++ + + + +
Sbjct: 61 NVIEVNDRLKPMVNLVDSLKTLQPNKVAEMIENQGLFKDHVEDVNFQPVKYS-ALTSNNE 119
Query: 132 ELHTMIGTGKVEGSIDAGNMLKP----ELSRGELHCIGATTLNEY---RQYIEK----DA 180
E ++ G +I + P +L++ ++ ++ + R+ ++
Sbjct: 120 ECTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDGFHLSRRCLDLFKDPQT 179
Query: 181 AFERRFQKILVEEPDIEETISILR-GLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 239
A +RR + + + IL K HH T S+ + I D F+
Sbjct: 180 AHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIFV 239
Query: 240 PDKAIDLIDEAAAKIKIEIDSKPEI 264
P L D + I ++ I
Sbjct: 240 PGFNHALKDPTPDQYCISKFTRIVI 264
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine
tetraphosphatase, monomer, PSI- 2, protein structure
initiative, nysgrc; 2.05A {Trypanosoma brucei}
Length = 262
Score = 218 bits (558), Expect = 4e-65
Identities = 62/272 (22%), Positives = 101/272 (37%), Gaps = 61/272 (22%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHE 733
D+HGC+ L LL+ + K + +GDL+NKGP S +R++ + A VLGNH+
Sbjct: 26 DIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRLG--AYSVLGNHD 83
Query: 734 IHLLDVLININKKSKLDTFD-----DILDAPDKKKLVSWLRTQPLAIYY--KKYLMIHAG 786
LL ++ + KK L D L + ++L P I ++ HAG
Sbjct: 84 AKLLKLVKKLGKKECLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAG 143
Query: 787 VAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFII 846
+ Q + D++ +
Sbjct: 144 LHPQRPVDRQ-----------------------------------------YEDEVTTMR 162
Query: 847 NTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTLGL--I 904
N + + + T+ ++ + PW + TV+FGH + GL
Sbjct: 163 NLIEKEQEATGGVTLTATEE------TNDGGKPWASMWRGPE---TVVFGHDARRGLQEQ 213
Query: 905 MKPNIICLDTGCVWGNKLTALCLEDRSIIQVN 936
KP I LD+ CV+G +L+A II V
Sbjct: 214 YKPLAIGLDSRCVYGGRLSAAVFPGGCIISVP 245
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr
protein phosphatase, ppase, manganese, sulfate, viral
protein; 2.15A {Enterobacteria phage lambda} SCOP:
d.159.1.3
Length = 221
Score = 136 bits (345), Expect = 1e-36
Identities = 53/294 (18%), Positives = 91/294 (30%), Gaps = 87/294 (29%)
Query: 647 MNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLIN 706
M KI + + I +G D+HGC +L L I + + I +GDL++
Sbjct: 1 MRYYEKIDGSKYRNIWVVG--------DLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVD 52
Query: 707 KGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKS-----------KLDTFDDI 755
+G ++++ L ++ + + V GNHE ++D L + LD +I
Sbjct: 53 RGAENVECLELI--TFPWFRAVRGNHEQMMIDGLSERGNVNHWLLNGGGWFFNLDYDKEI 110
Query: 756 LDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNL 815
L K L KKY++ HA
Sbjct: 111 LAKALAHKADELPLIIELVSKDKKYVICHAD----------------------------- 141
Query: 816 FFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQN 875
+D + +D Q I R R
Sbjct: 142 ---------YPFDEYEF---GKPVDHQQVI---WNRERISN------------------- 167
Query: 876 NYIPWFDLPNRKTIDITVLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLED 929
+ T +FGH + + N + +DTG V+ LT + ++
Sbjct: 168 ---SQNGIVKEIKGADTFIFGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQG 218
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle,
hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Length = 342
Score = 111 bits (277), Expect = 1e-26
Identities = 57/357 (15%), Positives = 118/357 (33%), Gaps = 70/357 (19%)
Query: 611 FINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDL-- 668
++ Y N L +I+ + ++ + +K+I +
Sbjct: 12 YVITPISGQSTAYWICDNRLKTTSIEKLQVNRPEHCGDLPETKLSSEIKQIMPDTYLGIK 71
Query: 669 -IYGARDVHGCKKSLSILLKKIHKKSPEANF-------IFLGDLINKGPQSLDTLRMVYS 720
+ DVHG L LLKK + N+ + GD+ ++G Q + L +Y
Sbjct: 72 KVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQ 131
Query: 721 MRNYAK-------IVLGNHEIHLLDVLININKKSKLDTFDDILDAPDK-----KKLVSWL 768
+ A+ +++GNHE +L + + I +K ++ WL
Sbjct: 132 LDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQRYDIATTLINRPYNKLYSADTEIGQWL 191
Query: 769 RTQPLAIYYKKYLMIHAGVAKQWTAQQTIK------LSHQVEKILRTSYWKNLFFKLYNH 822
R++ I L +H G++ +W +++ V+ ++ +L L+
Sbjct: 192 RSKNTIIKINDVLYMHGGISSEWISRELTLDKANALYRANVDASKKSLKADDLLNFLFFG 251
Query: 823 NSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFD 882
N W R F + T + +++ N
Sbjct: 252 NGPTW----------------------YRGYFSE-TFTEAELDTILQHFNVN-------- 280
Query: 883 LPNRKTIDITVLFGHWSTLGLIMKPN--IICLDTGCVWGNKLTALCLEDRSIIQVNN 937
++ GH S ++ + +I +D+ G L LE+ +I+
Sbjct: 281 ---------HIVVGHTSQERVLGLFHNKVIAVDSSIKVGKSGELLLLENNRLIRGLY 328
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 71.0 bits (173), Expect = 1e-12
Identities = 98/592 (16%), Positives = 191/592 (32%), Gaps = 139/592 (23%)
Query: 107 EFEDRLKKIL--KEISN--NQKDIIIFIDELHTMI---GTGKVEGSIDAGNMLKPE---- 155
+ +D K IL +EI + KD + L + V+ + +L+
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFV--EEVLRINYKFL 94
Query: 156 LSRGELHCIGATTLNEYRQYIE-KDAAFE--RRFQKILVEEPD-IEETISILRGLQK-KY 210
+S + + R YIE +D + + F K V + L L+ K
Sbjct: 95 MSPIKTEQRQPSM--MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 211 EVHHGVEITDPAIVAASELSYRYISDRFMPDKA--IDLIDEAAAKIKIEIDSKPEIMDKL 268
+ GV + VA + + K ++L +S +++ L
Sbjct: 153 VLIDGVLGSGKTWVALDVCLSYKVQCKM-DFKIFWLNLK---------NCNSPETVLEML 202
Query: 269 ERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTL-IKDSQQ 327
++ L Q+ + D SS IK I+ ++ + L K YE L + + Q
Sbjct: 203 QKLLYQIDPNWTS---RSDHSSN-----IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQ 254
Query: 328 IKEEIEK--VRLKINKATRKS---DWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANK 382
+ + KI TR D+ + + + L+ L K + L K
Sbjct: 255 NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-----K 309
Query: 383 FTLLKTKVGSEEIAEIVSRTTGIP--VSKIVQVEREKLLNIENLLCKRVVGQDEAISAVS 440
+ + + E+ T P +S I + R+ L +N + ++
Sbjct: 310 YLDCRPQDLPREV------LTTNPRRLSIIAESIRDGLATWDNW-------KHVNCDKLT 356
Query: 441 NAIRRSRSGLS--DAKRPYGSF-MFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 497
I S + L + ++ + +F P LS F+ +S + + +++
Sbjct: 357 TIIESSLNVLEPAEYRKMFDRLSVF--PPSAHIPT--ILLSLIWFDVIKSDVMVVVNKLH 412
Query: 498 EK--------------HSI---------------SRLIGA-------------PP---GY 512
+ SI ++ PP Y
Sbjct: 413 KYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
Query: 513 IGYEEGGY-LTEIVRRKPYSL---ILLD------EIEK------ANSDVFNILLQILD-D 555
Y G+ L I + +L + LD +I A+ + N L Q+
Sbjct: 473 F-YSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531
Query: 556 GRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYF 607
+ DN + N I+ + + I +++++A+M E + F
Sbjct: 532 PYICDNDPKYERLVNAILDFLPKIEENLICS---KYTDLLRIALMAEDEAIF 580
Score = 67.2 bits (163), Expect = 2e-11
Identities = 107/746 (14%), Positives = 216/746 (28%), Gaps = 244/746 (32%)
Query: 167 TTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAA 226
E QY KD F+ V+ D ++ + + + K E+ H + D
Sbjct: 9 FETGE-HQYQYKDILSV--FEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAV---- 61
Query: 227 SELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIE--HEAIKR 284
+ R L + + E++ K ++++ + IK
Sbjct: 62 -SGTLR-------------LFW-------TLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 285 EYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVR-------- 336
E + S + I ++ ++L Y + + KY + ++ ++++ + ++R
Sbjct: 101 EQRQPSMMTRMYI-EQRDRL---YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 337 --------------LKINKATRKSD----WQTVSKLKYGE--LNKLERILKEKSQKDIQL 376
K K D W + E L L+++L +
Sbjct: 157 GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSR 216
Query: 377 PNNANKFTLLKTKVGSEEIAEIVSR---TTGIPVSKIV--QVEREKLLNIENLLCKRVV- 430
++++ K+ I + R + +V V+ K N NL CK ++
Sbjct: 217 SDHSS-----NIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 431 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 490
+ + ++ +A + L + E+ L +
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSM-----------TLTPDEVKSLLLKYL--------- 311
Query: 491 IDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILL 550
L P E++ P L ++ E
Sbjct: 312 --------DCRPQDL---PR------------EVLTTNPRRLSIIAE------------- 335
Query: 551 QILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPE 610
+ D N++ ++ DK+ II+ ++ +R
Sbjct: 336 ------SIRDGLATWDNWK--------HVNCDKL-------TTIIESSLNVLEPAEYRKM 374
Query: 611 FINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIY 670
F D + VF I L I D+I
Sbjct: 375 F----DRLSVFPP--------------------------SAHIPTILLSLIWF---DVIK 401
Query: 671 GARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLG 730
DV +++ K+HK S L+ K P+ S+
Sbjct: 402 --SDV-------MVVVNKLHKYS----------LVEKQPK-----ESTISI--------- 428
Query: 731 NHEIHLLDVLININKKSKLDTFDDILDA-PDKKKLVSW-LRTQPLAIYYKKYLMIHAGVA 788
I+ L++ + + + L I+D K S L L Y+ ++ H
Sbjct: 429 -PSIY-LELKVKLENEYALH--RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNI 484
Query: 789 KQWTAQQTIKLSHQVEKILRTSYWKNLFF---KLYNHNSINWDNHLHTIHLNTIDKLQFI 845
+ + + R + + F K+ H+S W+ LNT+ +L+F
Sbjct: 485 EH----------PERMTLFRMVFL-DFRFLEQKI-RHDSTAWNASGSI--LNTLQQLKFY 530
Query: 846 INTLTRTRFCKIDGTIEFIKKNIKNN 871
+ C D E + I +
Sbjct: 531 -----KPYICDNDPKYERLVNAILDF 551
Score = 62.2 bits (150), Expect = 7e-10
Identities = 88/536 (16%), Positives = 159/536 (29%), Gaps = 136/536 (25%)
Query: 34 IGRDDEIRRAIQVLQR-RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 92
+ R + Q L R N ++ G G GKT +A + + KI
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTW----VALDVCLSYKVQCKMDFKIFW 186
Query: 93 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNML 152
L++ E L+ + K + + D + ++ I + +
Sbjct: 187 LNLK-------NCNSPETVLEMLQKLLYQIDPNWTSRSD------HSSNIKLRIHS---I 230
Query: 153 KPELSRGELHCIGATTLNEYRQYIE--------KDA----AFERRFQ-KILVEEPDIEET 199
+ EL R L + + Y ++A AF KIL+ + T
Sbjct: 231 QAELRR----------LLKSKPYENCLLVLLNVQNAKAWNAFN--LSCKILLTTRFKQVT 278
Query: 200 ISILRGLQKKYEV-HHGVEITDPAIVAASELSYRYISDRF--MPDKA-------IDLIDE 249
+ + HH + +T L +Y+ R +P + + +I
Sbjct: 279 DFLSAATTTHISLDHHSMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-- 333
Query: 250 AAAKIKIEIDS----KPEIMDKLERRLIQLKIEH---EAIKREYDESSKKRLLLIKKEIN 302
A I+ + + K DKL +I+ + ++ +D L + +
Sbjct: 334 -AESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYRKMFDR-----LSVFPPSAH 386
Query: 303 KLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRL--KINKATRKS--DWQTVSKLKYGE 358
I L IW D + ++ K L K K + S K+K
Sbjct: 387 ---IPTILLSLIWFDVIK--SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLEN 441
Query: 359 LNKLERILKEK-------SQKDIQLPNNANKFTL-----LKTKVGSEEIAEIVSRTTGIP 406
L R + + D+ P F LK E +
Sbjct: 442 EYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF-------- 493
Query: 407 VSKIVQVEREKLLN---IENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFL 463
R L+ +E + S NA + L K Y ++
Sbjct: 494 --------RMVFLDFRFLEQKIRH--------DSTAWNASGSILNTLQQLKF-YKPYICD 536
Query: 464 G-PTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL-IGAPPGYIGYEE 517
P L + + EE++I S++ + R+ + A I +EE
Sbjct: 537 NDPK---YERLVNAILDFLPKIEENLIC---SKYT---DLLRIALMAEDEAI-FEE 582
Score = 59.9 bits (144), Expect = 4e-09
Identities = 72/497 (14%), Positives = 140/497 (28%), Gaps = 189/497 (38%)
Query: 481 IFNNEESIIR----IDMSEF----IEKHSISRLIGAPPGYIGYEEGGY-LTEIVRRKPYS 531
+ E++ + D+ + + K I +I + G L + K
Sbjct: 22 LSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDA----VSGTLRLFWTLLSKQEE 77
Query: 532 LI--LLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 589
++ ++E+ + N + L+ + T+ R ++ R I E+
Sbjct: 78 MVQKFVEEVLRIN---YKFLMSPIK----TEQRQPSMMTRMYI---------------EQ 115
Query: 590 GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNM 649
D+ + N+ ++ F ++R+ + L+ LL+
Sbjct: 116 RDR------LYNDNQV-FAKYNVSRLQPYLK-------------------LRQALLE--- 146
Query: 650 DLKISKAALKKISNIGFDLIYGARDVHGCKKS---------LSILLK---KIH------K 691
L+ N+ LI G V G K+ + K KI
Sbjct: 147 --------LRPAKNV---LIDG---VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 692 KSPEA--------------NFIFLGDLINKGPQSLDT----LRMVYSMRNYAKIVLGNHE 733
SPE N+ D + + + LR + + Y
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE-------- 244
Query: 734 IHLLDVLININKKSKLDTFD---------------DILDAPDKKKLVSWLRTQPLAIYYK 778
+ L VL+N+ + F+ D L A + + L
Sbjct: 245 -NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEV 303
Query: 779 KYLMIHAGVAKQWTAQQTIKLSHQVEKI--LRTSYWKNLFFKLYNHNSINWDNHLHTIHL 836
K L + K + + L +V R S + + WDN H
Sbjct: 304 KSL-----LLK-YLDCRPQDLPREVLTTNPRRLS----IIAESIRDGLATWDNWKHV--- 350
Query: 837 NTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNY-----------IP------ 879
DKL II + ++ ++ ++ + IP
Sbjct: 351 -NCDKLTTII-----------ESSLN----VLEPAEYRKMFDRLSVFPPSAHIPTILLSL 394
Query: 880 -WFDLPNRKTIDITVLF 895
WFD+ + +
Sbjct: 395 IWFDVIKSDVMVVVNKL 411
Score = 44.5 bits (104), Expect = 2e-04
Identities = 62/436 (14%), Positives = 138/436 (31%), Gaps = 111/436 (25%)
Query: 17 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRI 76
Y ID +R + R I+ ++ L + L+ ++ +
Sbjct: 207 YQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL---------VLLNVQ--- 254
Query: 77 INGEVPNSL-LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHT 135
N + N+ LS KILL T+++ + IS + + + DE+ +
Sbjct: 255 -NAKAWNAFNLSCKILLT--------TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKS 305
Query: 136 MIGTGKVEGSIDAGNMLKPELSRGE-LHC--IGA------TTLNEYRQY--------IE- 177
++ ++ L E+ I T + ++ IE
Sbjct: 306 LLLK-YLDCRPQ---DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361
Query: 178 -----KDAAFERRFQK--ILVEEPDI-EETISILRGLQKKYEVHHGVEITDPAIVAASEL 229
+ A + + F + + I +S++ K +V + + +L
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM---VVVN-------KL 411
Query: 230 SYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDES 289
+ ++ + I + I +E+ K E L R + ++H I + +D
Sbjct: 412 HKYSLVEKQPKESTISIPS-----IYLELKVKLENEYALHRSI----VDHYNIPKTFDSD 462
Query: 290 SKKRLLLIKKEINK---LEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRL-------KI 339
LI +++ I + +L+ I E+ V L KI
Sbjct: 463 D-----LIPPYLDQYFYSHIGH-HLKNIEHPERM---------TLFRMVFLDFRFLEQKI 507
Query: 340 NKATRKSDWQTVSKLK--YGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAE 397
+ + W + +L + + + K +L N F +I E
Sbjct: 508 RHDS--TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF--------LPKIEE 557
Query: 398 IVSRTTGIPVSKIVQV 413
+ + + ++++
Sbjct: 558 NLICS---KYTDLLRI 570
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural
genomics, MCSG, Zn binding, hydrolase; 1.95A
{Sphaerobacter thermophilus}
Length = 246
Score = 67.0 bits (163), Expect = 2e-12
Identities = 19/113 (16%), Positives = 42/113 (37%), Gaps = 4/113 (3%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHE 733
DVH +L +L + + LGD++ GP+ + + +V + V+GNH+
Sbjct: 11 DVHANLVALEAVLSDAGRVD---DIWSLGDIVGYGPRPRECVELVRVLAPNI-SVIGNHD 66
Query: 734 IHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAG 786
+ L + + + +L + P + + ++H
Sbjct: 67 WACIGRLSLDEFNPVARFASYWTTMQLQAEHLQYLESLPNRMIDGDWTVVHGS 119
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA
replication initiation, DNA BIND protein, AAA+ ATPase;
HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11
c.37.1.20 PDB: 1w5t_A*
Length = 412
Score = 67.2 bits (163), Expect = 8e-12
Identities = 38/333 (11%), Positives = 97/333 (29%), Gaps = 40/333 (12%)
Query: 31 DPVIGRDDEIRRAIQ-----VLQRRSKNNPVLI----GEPGVGKTAIVEGLAQRI----- 76
+ R E + +L ++ +I G G+GKT + + +R+
Sbjct: 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA 81
Query: 77 ----------INGEVPNSLLSKKILLLDIALLLAGTKYRGE-FEDRLKKILKEISNNQKD 125
+N + IL L + + RG D LK ++ +
Sbjct: 82 KEGLTVKQAYVNAFNAPN--LYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHY 139
Query: 126 IIIFIDELHTMIGTGKVEGSI-----DAGNMLKPELSRGELHCIGATTLNEYRQYIEKD- 179
+++ +DE +M+ + ++ + + + + Y+ +
Sbjct: 140 LLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKI 199
Query: 180 -AAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 238
+ K+ + E +IL Q+ + S++
Sbjct: 200 PQVESQIGFKLHLPAYKSRELYTILE--QRAELGLRDTVWEPRHLELISDVYGEDKGGDG 257
Query: 239 MPDKAIDLIDEAAAKIKIEIDSK--PEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLL 296
+AI + A + +++ K I+ ++ +L
Sbjct: 258 SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSENEAASIQTHELEALSIHE--LIILR 315
Query: 297 IKKEINKLEIKYANLEKIWKYEKTLIKDSQQIK 329
+ E +++ N + + + +K
Sbjct: 316 LIAEATLGGMEWINAGLLRQRYEDASLTMYNVK 348
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.5 bits (167), Expect = 9e-12
Identities = 100/580 (17%), Positives = 194/580 (33%), Gaps = 170/580 (29%)
Query: 304 LEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRK--SDWQTVSKLKYGELNK 361
L + + +LE + + Q++E+ K + + T +D + + EL
Sbjct: 9 LTLSHGSLEHVLLVPTASFFIASQLQEQFNK---ILPEPTEGFAADDEPTTPA---EL-- 60
Query: 362 LERILKEKSQKDIQLPNNANKFT-LLKTKVGSEEIA-----EIVSRTTGIPVSKIVQVER 415
+ + L S ++ P+ +F +L + E +I + + + +
Sbjct: 61 VGKFLGYVSSL-VE-PSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVK 118
Query: 416 EKLLNIENLLCKRVVGQD----EAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKT 471
K L I+N + R++ + ++ SA+ A+ + L F G G G T
Sbjct: 119 TKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQL------VAIF---G--GQGNT 166
Query: 472 ELC-KTLSACIFNNEESIIRIDMSEFIEKHS--ISRLIGAPPGYIG-YEEG--------- 518
+ + L ++ ++ + I+ + +S LI + +G
Sbjct: 167 DDYFEELRD-LYQTYHVLVG----DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLEN 221
Query: 519 -------GYLTEIVRRKPYS--LILLDEIEKANSDVFNILLQIL--DDGRLTDN-RGRTI 566
YL I P S LI + I+ A+ + + ++L G L +G T
Sbjct: 222 PSNTPDKDYLLSI----PISCPLIGV--IQLAH---YVVTAKLLGFTPGELRSYLKGATG 272
Query: 567 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI----------NRID 616
+ + ++ + +D + ++ I + F FI +
Sbjct: 273 HSQG-LVTAVAIAETDSWESFFVSVRKAITVL--------F---FIGVRCYEAYPNTSLP 320
Query: 617 DIIVFRYLNRKN-----ILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYG 671
I+ L +LSI+N+ +++ + K N L K++ I L+ G
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAG----KQVE-IS--LVNG 373
Query: 672 ARD--VHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVL 729
A++ V G +SL L + K K P LD R+ +S R K+
Sbjct: 374 AKNLVVSGPPQSLYGLNLTLRKA--------------KAPSGLDQSRIPFSER---KLKF 416
Query: 730 GN---------HEIHLLDVLININ----------KKSKL-----DTFD--DI--LDAPDK 761
N H L+ IN + DTFD D+ L
Sbjct: 417 SNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 762 KKLVSWLRTQPLAIYYKKYLMIHAGVAKQWTAQQTIKLSH 801
+++V + P + W K +H
Sbjct: 477 ERIVDCIIRLP----------VK------WETTTQFKATH 500
Score = 52.0 bits (124), Expect = 1e-06
Identities = 65/403 (16%), Positives = 122/403 (30%), Gaps = 148/403 (36%)
Query: 4 YTLDEEHIGYLKK-YTI------DLTEKA--RLGKLDPVIGRDDEI-RRAIQVLQ--RRS 51
Y +E L+ Y DL + + L +L +++ + + +L+
Sbjct: 169 Y-FEE-----LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENP 222
Query: 52 KNNP-------VLIGEPGVGKTAIVEGLAQRIINGEVPNSLL---------SKKILLLDI 95
N P + I P +G + + + G P L S+ ++
Sbjct: 223 SNTPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLV---T 279
Query: 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG-------SIDA 148
A+ +A T F ++K + ++F IG V S+
Sbjct: 280 AVAIAETDSWESFFVSVRKAIT---------VLFF------IG---VRCYEAYPNTSLPP 321
Query: 149 GNMLKPELSRGE------LHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISI 202
++L+ L E L T ++ ++ + L +E IS+
Sbjct: 322 -SILEDSLENNEGVPSPMLSISNLT-----QEQVQDYV---NKTNSHLPAGKQVE--ISL 370
Query: 203 ---------------LRGLQ---KKYEVHHGVEITDPAIVAASELSYR--YISDRFMP-- 240
L GL +K + G D + + SE R S+RF+P
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSG---LDQSRIPFSE---RKLKFSNRFLPVA 424
Query: 241 --------DKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIK-----REYD 287
A DLI++ K + ++K ++I R
Sbjct: 425 SPFHSHLLVPASDLINKDLVKNNVSFNAK------------DIQIPVYDTFDGSDLRVLS 472
Query: 288 ESSKKRL--LLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQI 328
S +R+ +I+ + W E T + I
Sbjct: 473 GSISERIVDCIIRLPVK------------W--ETTTQFKATHI 501
Score = 49.3 bits (117), Expect = 7e-06
Identities = 56/322 (17%), Positives = 101/322 (31%), Gaps = 128/322 (39%)
Query: 115 ILKEISNNQKDIII-F-------IDELHT-MIGTGKVEGSIDAGNMLK---PELS----- 157
IL + NN ++ I F I E ++ MI V+G + + K +
Sbjct: 1661 ILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR 1720
Query: 158 --RGELHCIGATTLNEYRQ----YIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYE 211
+G L AT ++ Q +EK AAFE D++ +GL
Sbjct: 1721 SEKGLLS---AT---QFTQPALTLMEK-AAFE-----------DLKS-----KGLIPADA 1757
Query: 212 VH--H--GVEITDPAIVAASE-LSYRYISDRFMPDKAIDL-------IDEAAAKIKIEID 259
H G E A+ + ++ +S I +++ + A + E+
Sbjct: 1758 TFAGHSLG-EYA--ALASLADVMS---IES------LVEVVFYRGMTMQVAVPRD--ELG 1803
Query: 260 SKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEI-NKLEIKYANLEKIWKYE 318
M + + EA++ + K+ L+ EI N Y N+E
Sbjct: 1804 RSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV--EIVN-----Y-NVE------ 1849
Query: 319 KTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGE---LNKLERILKEKSQKDIQ 375
+QQ V + G+ L+ + +L + I
Sbjct: 1850 ------NQQY------V---------------AA----GDLRALDTVTNVLNFIKLQKI- 1877
Query: 376 LPNNANKFTLLKTKVGSEEIAE 397
L+ + EE+
Sbjct: 1878 ------DIIELQKSLSLEEVEG 1893
Score = 47.4 bits (112), Expect = 3e-05
Identities = 49/297 (16%), Positives = 83/297 (27%), Gaps = 121/297 (40%)
Query: 647 MNMDLKISKAALKKISNIGFDLIYGARDVHGCKK-SLSILLKKIHKKSPEANFIFLGDLI 705
M MDL + A + + ++ D H SIL I +P I G
Sbjct: 1631 MGMDLYKTSKAAQDV----WNRA----DNHFKDTYGFSIL--DIVINNPVNLTIHFG--- 1677
Query: 706 NKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSKLDTF---DDILDAPDKK 762
G + +R YS + IV G + + IN+ S TF +L A
Sbjct: 1678 --GEKGKR-IRENYSAMIFETIVDGK--LKTEKIFKEINEHSTSYTFRSEKGLLSATQ-- 1730
Query: 763 KLVSWLRTQP------LAIYY--KKYLMI--------H--------AGVAKQWTAQQTIK 798
TQP A + K +I H A +A + + ++
Sbjct: 1731 ------FTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVE 1784
Query: 799 LSHQ-----------------------------------------VEKILRTSYWKNLFF 817
+ VE++ + + W
Sbjct: 1785 VVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGW---LV 1841
Query: 818 KLYNHNSINWDNHLHTI----HLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKN 870
++ N+N N L +D + ++N F K+ + I
Sbjct: 1842 EIVNYNVENQ-----QYVAAGDLRALDTVTNVLN------FIKL--------QKIDI 1879
Score = 40.8 bits (95), Expect = 0.003
Identities = 58/343 (16%), Positives = 96/343 (27%), Gaps = 153/343 (44%)
Query: 467 GVGKTELCKTLSA--CIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEI 524
G+G +L KT A ++N R D H G + +I
Sbjct: 1630 GMGM-DLYKTSKAAQDVWN------RAD------NHFKDTY------------GFSILDI 1664
Query: 525 VRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 584
V P +L I G +G+ I R M D
Sbjct: 1665 VINNPVNLT------------------IHFGGE----KGKRI--RENYSAMIFETIVDGK 1700
Query: 585 KEMEKGDKEIIKLAVMNEV--KIYFRPEFINRIDDIIVFRYLNR-KN----IL--SIANI 635
+ EK KEI NE FR E + L+ + + A
Sbjct: 1701 LKTEKIFKEI------NEHSTSYTFRSE-----KGL-----LSATQFTQPALTLMEKA-- 1742
Query: 636 QLNILKNKLLKMNMDLKISKA--------ALKKISN-IGF-DLIY-----G-------AR 673
LK+K L + A AL +++ + L+ G R
Sbjct: 1743 AFEDLKSKGLI---PADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPR 1799
Query: 674 DVHG------------------CKKSLSILLKKIHKKSPE----ANFIFLGDLIN-KGPQ 710
D G +++L +++++ K++ N+ N + Q
Sbjct: 1800 DELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNY-------NVENQQ 1852
Query: 711 SLDTLRMVYSMRNYAKIVLGNHEIHLLDVLINI---NKKSKLD 750
V ++ LD + N+ K K+D
Sbjct: 1853 ----------------YVAAG-DLRALDTVTNVLNFIKLQKID 1878
Score = 35.8 bits (82), Expect = 0.076
Identities = 51/289 (17%), Positives = 95/289 (32%), Gaps = 87/289 (30%)
Query: 360 NKLERILKEK---SQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVERE 416
N+ + K+ S DI + NN T+ + I E S + +++ E
Sbjct: 1647 NRADNHFKDTYGFSILDIVI-NNPVNLTIHFGGEKGKRIRENYSAMIFETIVDG-KLKTE 1704
Query: 417 KLLNIENLLCKRVV--GQDE----------AISAVSNAI-RRSRS-GLSDAKRPY-G-SF 460
K+ N + A++ + A +S GL A + G S
Sbjct: 1705 KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHS- 1763
Query: 461 MFLGPTGVGKTELCKTLSAC--IFNNEESI----IR-IDMSEFIEKHSISR----LIGAP 509
LG E L++ + + E + R + M + + + R +I
Sbjct: 1764 --LG-------EYA-ALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAIN 1813
Query: 510 PGYIGY---EEGGYLTEIVRR--KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGR 564
PG + +E L +V R K ++ EI N +N+ +
Sbjct: 1814 PGRVAASFSQEA--LQYVVERVGKRTGWLV--EI--VN---YNV-------------ENQ 1851
Query: 565 TI----NFR--NTIIVMTSNLGSDKIKEMEKGDKEIIKLAV---MNEVK 604
+ R +T+ + + + KI II+L + EV+
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQKID--------IIELQKSLSLEEVE 1892
Score = 35.0 bits (80), Expect = 0.13
Identities = 22/123 (17%), Positives = 39/123 (31%), Gaps = 28/123 (22%)
Query: 43 AIQVLQRRSK--NNPVLIGEPGVGKTAIVEGLAQRIING-------EVPNSLLSKKILLL 93
++V+ R V E G ++ R+ V + + L+
Sbjct: 1782 LVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLV 1841
Query: 94 DIA--------LLLAGTKYRGEFE--DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE 143
+I + AG D + +L I + DII EL + +VE
Sbjct: 1842 EIVNYNVENQQYVAAGDL-----RALDTVTNVLNFIKLQKIDII----ELQKSLSLEEVE 1892
Query: 144 GSI 146
G +
Sbjct: 1893 GHL 1895
Score = 34.6 bits (79), Expect = 0.19
Identities = 36/205 (17%), Positives = 66/205 (32%), Gaps = 59/205 (28%)
Query: 70 EGLAQRIINGEVPNS---LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---Q 123
EG A + P + L+ K L ++ L+ +K G+F+ L L E N
Sbjct: 46 EGFAA----DDEPTTPAELVGK--FLGYVSSLVEPSK-VGQFDQVLNLCLTEFENCYLEG 98
Query: 124 KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFE 183
DI H + + D + EL I + YI +
Sbjct: 99 NDI-------HALAAK--LLQEND-----TTLVKTKEL--I--------KNYITARIMAK 134
Query: 184 RRFQK----ILVEEPDIEET--ISILRG----------LQKKYEVHHGVEITDPAIVAAS 227
R F K L ++I G L+ Y+ +H + I ++
Sbjct: 135 RPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHV--LVGDLIKFSA 192
Query: 228 ----ELSYRYISDRFMPDKAIDLID 248
EL + + + +++++
Sbjct: 193 ETLSELIRTTLDAEKVFTQGLNILE 217
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure
initiative, southeast collaboratory for structural
genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP:
d.159.1.5 PDB: 2gju_A
Length = 252
Score = 56.7 bits (136), Expect = 7e-09
Identities = 15/132 (11%), Positives = 45/132 (34%), Gaps = 19/132 (14%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEAN----FIFLGDLINKGPQSLDTLRMVYSM--RNYAKI 727
++ G +L+ L +I + E + LG+++ P + + ++ + + KI
Sbjct: 9 NIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKENVKI 68
Query: 728 VLGNHEIHLLDVLININKKSKLDTFDDILDAPD---------KKKLVSWLRTQPLAIYY- 777
+ G ++ + + +D + + +LR P+ +
Sbjct: 69 IRGKYDQIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDK 128
Query: 778 ---KKYLMIHAG 786
+ ++
Sbjct: 129 IGGNEVFGVYGS 140
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric
AP4A hydrolase, phosphodiesterase, binding, Mn2+
binding, hydrolase; 1.90A {Streptococcus pneumoniae}
PDB: 3qfn_A 3qfo_A*
Length = 270
Score = 53.1 bits (127), Expect = 1e-07
Identities = 20/127 (15%), Positives = 39/127 (30%), Gaps = 11/127 (8%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHE 733
D+HG +L +L + + + LGD++ G L ++ + VLGN E
Sbjct: 19 DIHGNTTALEAVLADARQLGVDE-YWLLGDILMPGTGRRRILDLLDQL-PITARVLGNWE 76
Query: 734 IHLLDVLI---------NINKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIH 784
L + + + + + + L + + H
Sbjct: 77 DSLWHGVRKELDSTRPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISH 136
Query: 785 AGVAKQW 791
K W
Sbjct: 137 HLPDKNW 143
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold,
hydro; HET: ADP; 2.91A {Escherichia coli}
Length = 500
Score = 51.7 bits (124), Expect = 8e-07
Identities = 32/140 (22%), Positives = 50/140 (35%), Gaps = 17/140 (12%)
Query: 415 REKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELC 474
E++ + + L K + + AI A LS S LGP G+ K+ +
Sbjct: 10 AERISRLSSSLEKGLYERSHAIRLCLLAA------LSG-----ESVFLLGPPGIAKSLIA 58
Query: 475 KTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYS-LI 533
+ L N M+ F + G +EG Y P + ++
Sbjct: 59 RRLKFAFQNARAF--EYLMTRFSTP---EEVFGPLSIQALKDEGRYERLTSGYLPEAEIV 113
Query: 534 LLDEIEKANSDVFNILLQIL 553
LDEI KA + N LL +
Sbjct: 114 FLDEIWKAGPAILNTLLTAI 133
Score = 35.5 bits (82), Expect = 0.084
Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 33 VIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGE 80
+ R IR + S + L+G PG+ K+ I L N
Sbjct: 24 LYERSHAIRLCLLAAL--SGESVFLLGPPGIAKSLIARRLKFAFQNAR 69
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 49.4 bits (118), Expect = 6e-06
Identities = 43/175 (24%), Positives = 67/175 (38%), Gaps = 30/175 (17%)
Query: 57 LIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 116
L G PG GKT I +A L++ +++ K GE E L+K
Sbjct: 243 LYGPPGTGKTLIARAVANE----------TGAFFFLINGPEIMS--KLAGESESNLRKAF 290
Query: 117 KEISNNQKDIIIFIDELHTMI-----GTGKVEGSIDA--GNMLKPELSRGELHCIGATTL 169
+E N IIFIDEL + G+VE I + ++ R + + AT
Sbjct: 291 EEAEKNAP-AIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAATN- 348
Query: 170 NEYRQYIEK-DAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITD 220
D A R RF + + + PD + IL+ K ++ V++
Sbjct: 349 -----RPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQ 398
Score = 35.5 bits (82), Expect = 0.093
Identities = 31/229 (13%), Positives = 72/229 (31%), Gaps = 26/229 (11%)
Query: 318 EKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLP 377
+ I+ +K L I+ + R +++ ++
Sbjct: 98 DVISIQPCPDVKYGKRIHVLPIDDTVEGITGNLFEVYLKPYFLEAYRPIRKGDIFLVRGG 157
Query: 378 NNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAIS 437
A +F +++T IV+ T I ++ ++ + V G + ++
Sbjct: 158 MRAVEFKVVETDPSP---YCIVAPDTVIHCEGEPIKREDEEESLNEVGYDDVGGCRKQLA 214
Query: 438 A----VSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 493
V +R + +P + GP G GKT + + ++ I+
Sbjct: 215 QIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET---GAFFFLING 271
Query: 494 SEFIEKHSISRLIGAPPGYIGYEEGGYLTEI---VRRKPYSLILLDEIE 539
E ++ G E L + + ++I +DE++
Sbjct: 272 PE---------IMSKLAG----ESESNLRKAFEEAEKNAPAIIFIDELD 307
Score = 35.2 bits (81), Expect = 0.14
Identities = 41/183 (22%), Positives = 72/183 (39%), Gaps = 39/183 (21%)
Query: 57 LIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK---ILLLDIALLLAGTKYRGEFEDRLK 113
G PG GKT + + +A E + +S K +L T + GE E ++
Sbjct: 516 FYGPPGCGKTLLAKAIA-----NECQANFISIKGPELL----------TMWFGESEANVR 560
Query: 114 KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAG------NMLKPEL----SRGELHC 163
+I + ++F DEL ++ G N + E+ ++ +
Sbjct: 561 EIFDKARQAAP-CVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 619
Query: 164 IGATTLNEYR-QYIEKDAAFER--RFQKIL-VEEPDIEETISILRGLQKKYEVHHGVEIT 219
IGAT R I D A R R +++ + PD + ++IL+ +K V V++
Sbjct: 620 IGATN----RPDII--DPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLE 673
Query: 220 DPA 222
A
Sbjct: 674 FLA 676
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 46.3 bits (109), Expect = 3e-05
Identities = 31/311 (9%), Positives = 86/311 (27%), Gaps = 22/311 (7%)
Query: 31 DPVIGRDDEIRRAIQVLQRRSKN------NPVLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
+ R+ ++++ +L +N L+G PG GKT + L + +
Sbjct: 17 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARF 76
Query: 85 LLSKKILLLDIALLLAGTKYRGEFE---------DRLKKILKEISNNQKDIIIFIDELHT 135
+ + + ++ + L +++ + + + +D+
Sbjct: 77 VYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFN 136
Query: 136 MIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPD 195
+ + + +L + + + ++ I
Sbjct: 137 LA--PDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYT 194
Query: 196 IEETISILRGLQKKYEVHHGVEITDPAI---VAASELSYRYISDRFMPDKAIDLIDEAAA 252
++ IL + ++ + + ++R AID++ +A
Sbjct: 195 KDQIFDILL--DRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAY 252
Query: 253 KIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLE 312
+ D + L E + K LL I + + Y
Sbjct: 253 AAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVRSLKISHTPYITFG 312
Query: 313 KIWKYEKTLIK 323
+ K + +
Sbjct: 313 DAEESYKIVCE 323
Score = 39.4 bits (91), Expect = 0.005
Identities = 21/138 (15%), Positives = 46/138 (33%), Gaps = 12/138 (8%)
Query: 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 486
KR+ +++ + + + + L + Y LG G GKT + L +
Sbjct: 17 KRLPHREQQLQQLDILLG---NWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT 73
Query: 487 -SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV--------RRKPYSLILLDE 537
+ I+ + +I I G E + R Y ++LD+
Sbjct: 74 ARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDD 133
Query: 538 IEKANSDVFNILLQILDD 555
D+ + +++ +
Sbjct: 134 AFNLAPDILSTFIRLGQE 151
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo
sapiens}
Length = 389
Score = 45.2 bits (107), Expect = 8e-05
Identities = 48/164 (29%), Positives = 74/164 (45%), Gaps = 30/164 (18%)
Query: 57 LIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 116
L G PG GKT + + +A E + + + A L +KY GE E +L + L
Sbjct: 153 LFGPPGNGKTMLAKAVA-----AESNATFFN-----ISAASLT--SKYVGEGE-KLVRAL 199
Query: 117 KEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL--------SRGELH--CIGA 166
++ + IIFID++ +++ + EG DA LK E S G+ +GA
Sbjct: 200 FAVARELQPSIIFIDQVDSLLCE-RREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGA 258
Query: 167 TTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 209
T + E D A RRF K + V P+ E + +L+ L K
Sbjct: 259 TNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK 297
>3ec2_A DNA replication protein DNAC; helicase loader, replication
initiation factor, ATP-binding, nucleotide-binding; HET:
DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Length = 180
Score = 43.1 bits (102), Expect = 9e-05
Identities = 26/135 (19%), Positives = 45/135 (33%), Gaps = 32/135 (23%)
Query: 459 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYI----- 513
F+G GVGKT L+ EK I I
Sbjct: 40 GLTFVGSPGVGKT----HLAVATLK-----------AIYEKKGIRGYFFDTKDLIFRLKH 84
Query: 514 GYEEGGYLTEIVRRKPYSLILLDEI--EKANSDVFNILLQILDDGRLTDNRGRTINFRNT 571
+EG + +++LD++ E+ + ++ I+ R N ++T
Sbjct: 85 LMDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITY--------RYNNLKST 136
Query: 572 IIVMTSNLGSDKIKE 586
II T+N + +E
Sbjct: 137 II--TTNYSLQREEE 149
Score = 31.6 bits (72), Expect = 0.79
Identities = 20/96 (20%), Positives = 35/96 (36%), Gaps = 10/96 (10%)
Query: 38 DEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL 97
IR + +G PGVGKT + + I + + D
Sbjct: 24 LTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKK------GIRGYFFDTKD 77
Query: 98 LLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 133
L+ K E + K LK + N+ +++ +D+L
Sbjct: 78 LIFRLK-HLMDEGKDTKFLKTVLNS--PVLV-LDDL 109
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural
genomics consortium, ATP- hydrolase, magnesium,
metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo
sapiens}
Length = 357
Score = 44.4 bits (105), Expect = 1e-04
Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 30/164 (18%)
Query: 57 LIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 116
L G PG GKT I + +A + + S + + L +K+ GE E ++ + L
Sbjct: 122 LFGPPGTGKTLIGKCIA-----SQSGATFFS-----ISASSLT--SKWVGEGE-KMVRAL 168
Query: 117 KEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----------SRGELHCIGA 166
++ Q+ +IFIDE+ +++ + +G ++ +K E S + +GA
Sbjct: 169 FAVARCQQPAVIFIDEIDSLLSQ-RGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGA 227
Query: 167 TTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 209
T + E D A RR K + + P+ I+ L K
Sbjct: 228 TNRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK 266
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta
domain, C-terminal helix, ATP-binding, E
nucleotide-binding; 2.90A {Saccharomyces cerevisiae}
PDB: 2qpa_A*
Length = 355
Score = 43.7 bits (103), Expect = 2e-04
Identities = 42/175 (24%), Positives = 72/175 (41%), Gaps = 37/175 (21%)
Query: 49 RRSKNNPVLIGEPGVGKTAIVEGLAQRI----INGEVPNSLLSKKILLLDIALLLAGTKY 104
R+ + +L G PG GK+ + + +A + L+S K+
Sbjct: 81 RKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSS-DLVS---------------KW 124
Query: 105 RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL-------- 156
GE E +L K L ++ K IIFID++ + GT + EG +A +K EL
Sbjct: 125 MGESE-KLVKQLFAMARENKPSIIFIDQVDALTGT-RGEGESEASRRIKTELLVQMNGVG 182
Query: 157 -SRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 209
+ +GAT + + D+A RRF++ I + PD+ ++
Sbjct: 183 NDSQGVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 232
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic
subunit alpha isoform; protein-protein complex, heat
repeat, signaling protein; HET: OKA; 2.60A {Homo
sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C*
3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C*
2nyl_C*
Length = 309
Score = 42.9 bits (102), Expect = 3e-04
Identities = 23/66 (34%), Positives = 39/66 (59%), Gaps = 9/66 (13%)
Query: 674 DVHGCKKSLSILLK--KIHKKSPEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL 729
DVHG L++ +I KSP+ N++F+GD +++G S++T L + +R +I +
Sbjct: 57 DVHG---QFHDLMELFRIGGKSPDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITI 113
Query: 730 --GNHE 733
GNHE
Sbjct: 114 LRGNHE 119
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA
ATPase, ATP-binding, coiled coil, membrane,
nucleotide-binding, phosphorylation; HET: ATP; 3.00A
{Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A
2jq9_A 2k3w_A 1yxr_A
Length = 444
Score = 43.4 bits (102), Expect = 3e-04
Identities = 41/176 (23%), Positives = 69/176 (39%), Gaps = 38/176 (21%)
Query: 49 RRSKNNPVLIGEPGVGKTAIVEGLAQRI-----INGEVPNSLLSKKILLLDIALLLAGTK 103
R +L G PG GK+ + + +A + L+SK
Sbjct: 164 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSS-DLVSK--------------- 207
Query: 104 YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL------- 156
+ GE E +L K L +++ K IIFIDE+ ++ G+ + E +A +K E
Sbjct: 208 WLGESE-KLVKNLFQLARENKPSIIFIDEIDSLCGS-RSENESEAARRIKTEFLVQMQGV 265
Query: 157 --SRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 209
+ +GAT + D+A RRF+K I + P+ ++ R
Sbjct: 266 GVDNDGILVLGATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGS 316
Score = 35.3 bits (81), Expect = 0.085
Identities = 28/191 (14%), Positives = 70/191 (36%), Gaps = 15/191 (7%)
Query: 312 EKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQ 371
E + Y+ + +K E + + K + + +++ ++ L K E+ ++ +
Sbjct: 29 EALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQKPVK 88
Query: 372 KDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVG 431
++ P + + + + Q++ ++ N+ V G
Sbjct: 89 EEQSGPVDEKGNDSDGEAESDDPEKKKL----------QNQLQGAIVIERPNVKWSDVAG 138
Query: 432 QDEAISAVSNAI---RRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 488
+ A A+ A+ + + + P+ + GP G GK+ L K ++ N +
Sbjct: 139 LEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--NNSTF 196
Query: 489 IRIDMSEFIEK 499
I S+ + K
Sbjct: 197 FSISSSDLVSK 207
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding,
hydrolase; 2.70A {Drosophila melanogaster}
Length = 297
Score = 42.3 bits (100), Expect = 5e-04
Identities = 43/165 (26%), Positives = 69/165 (41%), Gaps = 31/165 (18%)
Query: 57 LIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 116
L G PG GKT + +A E + L+ + A L +KY G+ E +L + L
Sbjct: 59 LFGPPGNGKTLLARAVA-----TECSATFLN-----ISAASLT--SKYVGDGE-KLVRAL 105
Query: 117 KEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL--------SRGELH---CIG 165
++ + + IIFIDE+ +++ + +A LK E + +
Sbjct: 106 FAVARHMQPSIIFIDEVDSLLSE-RSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLA 164
Query: 166 ATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 209
AT + E D A RRF K + V PD + +L L +K
Sbjct: 165 ATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQK 204
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 41.2 bits (97), Expect = 5e-04
Identities = 26/142 (18%), Positives = 46/142 (32%), Gaps = 32/142 (22%)
Query: 452 DAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----NEESIIRIDMSEFIEKHSISRLIG 507
+ + G GVGKT L A I N S + + + E + S
Sbjct: 49 EPGKKMKGLYLHGSFGVGKT----YLLAAIANELAKRNVSSLIVYVPELFRELKHS---- 100
Query: 508 APPGYIGYEEGGYLTEIVRRKPYSLILLDEI--EKANSDVFN-ILLQILDDGRLTDNRGR 564
++ ++ K +++LD++ E +S V + + IL R
Sbjct: 101 -------LQDQTMNEKLDYIKKVPVLMLDDLGAEAMSSWVRDDVFGPILQY--------R 145
Query: 565 TINFRNTIIVMTSNLGSDKIKE 586
T TSN ++
Sbjct: 146 MFENLPTFF--TSNFDMQQLAH 165
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 42.4 bits (99), Expect = 5e-04
Identities = 61/373 (16%), Positives = 125/373 (33%), Gaps = 44/373 (11%)
Query: 31 DPVIGRDDEIRRAIQVLQR----RSKNNPVLIGEPGVGKTAIVEGLAQRI---------- 76
+ R+D +R A ++ K + + +G G GKT + + + I
Sbjct: 20 KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEY 79
Query: 77 -------INGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 129
+N + L L G +K + N II+
Sbjct: 80 KDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-IRAIIY 138
Query: 130 IDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQ 187
+DE+ T++ G+++ +L R + I + R Y+ +
Sbjct: 139 LDEVDTLVKR-------RGGDIVLYQLLRSDANISVIMISNDINVRDYM--EPRVLSSLG 189
Query: 188 KILVEEP-DIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDL 246
++ +P D E+ IL + D + + +S + D KA++L
Sbjct: 190 PSVIFKPYDAEQLKFILS--KYAEYGLIKGTYDDEILSYIAAISAKEHGD---ARKAVNL 244
Query: 247 IDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEI 306
+ AA + E +DK Q ++ + R L+ +++
Sbjct: 245 LFRAAQLASGGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSAHK 304
Query: 307 KYANLEKIWKYEKTLIKDSQQIKEEIEK---VRLKINKATRKSDWQTVSKLKYGELNKLE 363
Y +L +K + + I E++ V+++I R + + L + K+
Sbjct: 305 MYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIRIINRGRAGGVKKYA-LVE-DKEKVL 362
Query: 364 RILKEKSQKDIQL 376
R L E + I +
Sbjct: 363 RALNETFEDSISI 375
Score = 30.9 bits (69), Expect = 1.8
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 21/129 (16%)
Query: 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKT----ELCKTLSACIF 482
K + +++ + + AIR + S +FLG TG GKT + +
Sbjct: 20 KEIPFREDILRDAAIAIRYFVKN----EVK-FSNLFLGLTGTGKTFVSKYIFNEIEEVKK 74
Query: 483 NNEES----IIRIDMSEF--IEKHSISRLIGAPPGYIGYEEGGYLTEIVRR------KPY 530
+EE ++ E + +S L G G+ + G L E + +
Sbjct: 75 EDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR 134
Query: 531 SLILLDEIE 539
++I LDE++
Sbjct: 135 AIIYLDEVD 143
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter
baumannii} PDB: 2xkk_A*
Length = 767
Score = 42.7 bits (101), Expect = 5e-04
Identities = 23/109 (21%), Positives = 37/109 (33%), Gaps = 30/109 (27%)
Query: 242 KAIDLIDEAAAKIKIEIDSKPEIMDK-----------LERRLIQL-KIEHEAIKREYDES 289
A ID I+ E KP +M+ LE +L L K+E I+ E DE
Sbjct: 649 IAYLDIDTVIRIIREEDQPKPVLMEHFNIDEIQAEAILELKLRHLAKLEEMEIRHEQDE- 707
Query: 290 SKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLK 338
+ + + + N E + I E+++ K
Sbjct: 708 -------LSAKAAIIREQLENPESLKNL----------IISELKEDAKK 739
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling,
decatenation, DNA bindi topology; 3.00A {Escherichia
coli}
Length = 716
Score = 42.6 bits (101), Expect = 6e-04
Identities = 25/109 (22%), Positives = 43/109 (39%), Gaps = 30/109 (27%)
Query: 242 KAIDLIDEAAAKIKIEIDSKPEIMDK-----------LERRLIQL-KIEHEAIKREYDES 289
A IDE I+ E + KP +M + LE +L L K+E I+ E E
Sbjct: 355 VAFLNIDEVIEIIRNEDEPKPALMSRFGLTETQAEAILELKLRHLAKLEEMKIRGEQSE- 413
Query: 290 SKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLK 338
++KE ++L+ A+ K+ +K+E++
Sbjct: 414 -------LEKERDQLQGILASERKMNNL----------LKKELQADAQA 445
>2qgz_A Helicase loader, putative primosome component; structural genomics,
PSI-2, protein structure initiative; 2.40A
{Streptococcus pyogenes serotype M3}
Length = 308
Score = 41.8 bits (98), Expect = 6e-04
Identities = 29/140 (20%), Positives = 49/140 (35%), Gaps = 31/140 (22%)
Query: 454 KRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYI 513
G G+GK+ L A + + E EK +S + P +
Sbjct: 149 SAEQKGLYLYGDMGIGKS----YLLAAMAH-----------ELSEKKGVSTTLLHFPSFA 193
Query: 514 -----GYEEGGYLTEIVRRKPYSLILLDEI--EKANSDVFNILLQILDDGRLTDNRGRTI 566
G EI K +++LD+I E+A S V + +LQ++ R+ +
Sbjct: 194 IDVKNAISNGSVKEEIDAVKNVPVLILDDIGAEQATSWVRDEVLQVILQYRMLEE----- 248
Query: 567 NFRNTIIVMTSNLGSDKIKE 586
T TSN ++
Sbjct: 249 --LPTFF--TSNYSFADLER 264
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 41.7 bits (97), Expect = 8e-04
Identities = 35/196 (17%), Positives = 62/196 (31%), Gaps = 22/196 (11%)
Query: 30 LDPVIGRDDEIRRAIQVLQRRSKN---------NPVLIGEPGVGKTAIVEGLAQRIINGE 80
L PV R E + V + R K + G PG GKT + +A
Sbjct: 36 LKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAG------ 89
Query: 81 VPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMI-GT 139
L + + + G++ KE+ ++FIDE + +
Sbjct: 90 ---LLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPD 146
Query: 140 GKVEGSIDAGNMLKPELS--RGELHCIGATTLNEYRQYIEKDAAFERRF-QKILVEEPDI 196
+ + +A +L + R +L I A + + + + F R I +
Sbjct: 147 NERDYGQEAIEILLQVMENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSD 206
Query: 197 EETISILRGLQKKYEV 212
EE I +
Sbjct: 207 EELFEIAGHMLDDQNY 222
Score = 32.4 bits (73), Expect = 0.59
Identities = 22/160 (13%), Positives = 52/160 (32%), Gaps = 19/160 (11%)
Query: 412 QVEREKLLNIENLLCKRVVGQDEA-------ISAVSNAIRRSRSGLSDAKRPYGSFMFLG 464
+ E + L + ++G + + R + GL+ F G
Sbjct: 16 EYEGSGAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTL-HMSFTG 74
Query: 465 PTGVGKTELCKTLSACIFNN----EESIIRIDMSEFI-------EKHSISRLIGAPPGYI 513
G GKT + ++ + + ++ + + + + L A G +
Sbjct: 75 NPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVL 134
Query: 514 GYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQIL 553
+E YL + Y ++ + + + + L+ IL
Sbjct: 135 FIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVIL 174
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase,
ATP-binding cassette, ATP-binding, endosome, MEM
nucleotide-binding; 2.70A {Saccharomyces cerevisiae}
PDB: 3eih_A* 2rko_A 3mhv_C
Length = 322
Score = 40.8 bits (96), Expect = 0.002
Identities = 41/167 (24%), Positives = 68/167 (40%), Gaps = 37/167 (22%)
Query: 57 LIGEPGVGKTAIVEGLAQRI----INGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRL 112
L G PG GK+ + + +A + L+S K+ GE E +L
Sbjct: 56 LYGPPGTGKSYLAKAVATEANSTFFSVSSS-DLVS---------------KWMGESE-KL 98
Query: 113 KKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL---------SRGELHC 163
K L ++ K IIFID++ + GT + EG +A +K EL +
Sbjct: 99 VKQLFAMARENKPSIIFIDQVDALTGT-RGEGESEASRRIKTELLVQMNGVGNDSQGVLV 157
Query: 164 IGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 209
+GAT + + D+A RRF++ I + PD+ ++
Sbjct: 158 LGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD 199
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit;
carbohydrate metabolism, cell cycle, cell division; HET:
1ZN; 1.63A {Homo sapiens} PDB: 3e7b_A* 3egg_A* 3egh_A*
3hvq_A 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A
2o8a_A 1u32_A* 1s70_A*
Length = 299
Score = 40.3 bits (95), Expect = 0.002
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 694 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHE 733
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE
Sbjct: 82 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 125
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo
sapiens}
Length = 322
Score = 40.4 bits (95), Expect = 0.002
Identities = 39/168 (23%), Positives = 67/168 (39%), Gaps = 38/168 (22%)
Query: 57 LIGEPGVGKTAIVEGLAQRI-----INGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR 111
L G PG GK+ + + +A + L+S K+ GE E +
Sbjct: 50 LFGPPGTGKSYLAKAVATEANNSTFFSISSS-DLVS---------------KWLGESE-K 92
Query: 112 LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL---------SRGELH 162
L K L +++ K IIFIDE+ ++ G+ + E +A +K E +
Sbjct: 93 LVKNLFQLARENKPSIIFIDEIDSLCGS-RSENESEAARRIKTEFLVQMQGVGVDNDGIL 151
Query: 163 CIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKK 209
+GAT + D+A RRF+K I + P+ ++ +
Sbjct: 152 VLGATNIPW-----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT 194
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase,
toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN;
2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Length = 330
Score = 40.3 bits (95), Expect = 0.002
Identities = 19/44 (43%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 694 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHE 733
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE
Sbjct: 83 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHE 126
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 39.5 bits (93), Expect = 0.003
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACI 481
VVGQ+ ++A++N + R + A ++F G GVGKT + + L+ +
Sbjct: 25 VVGQEHVLTALANGLSLGR--IHHA------YLFSGTRGVGKTSIARLLAKGL 69
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein;
HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A*
1e32_A* 1s3s_A* 2pjh_B
Length = 489
Score = 39.8 bits (93), Expect = 0.004
Identities = 48/184 (26%), Positives = 69/184 (37%), Gaps = 44/184 (23%)
Query: 57 LIGEPGVGKTAIVEGLAQRI------INGEVPNSLLSKKILLLDIALLLAGTKYRGEFED 110
L G PG GKT I +A ING ++S K GE E
Sbjct: 243 LYGPPGTGKTLIARAVANETGAFFFLINGP---EIMS---------------KLAGESES 284
Query: 111 RLKKILKEISNNQKDIIIFIDELHTM-----IGTGKVEGSIDAGNMLKPEL----SRGEL 161
L+K +E N IIFIDEL + G+VE I + L + R +
Sbjct: 285 NLRKAFEEAEKNAPA-IIFIDELDAIAPKREKTHGEVERRIVS--QLLTLMDGLKQRAHV 341
Query: 162 HCIGATTLNEYRQYIEKDAAFER--RF-QKILVEEPDIEETISILRGLQKKYEVHHGVEI 218
+ AT D A R RF +++ + PD + IL+ K ++ V++
Sbjct: 342 IVMAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDL 396
Query: 219 TDPA 222
A
Sbjct: 397 EQVA 400
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone,
hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Length = 310
Score = 39.6 bits (93), Expect = 0.004
Identities = 32/126 (25%), Positives = 54/126 (42%), Gaps = 29/126 (23%)
Query: 429 VVGQDEAISAVSNAIR-RSRSGLSDAK-----RPYGSFMFLGPTGVGKTELCKTLSACIF 482
++GQ +A AV+ A+R R R P M GPTGVGKTE+ + L+
Sbjct: 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMI-GPTGVGKTEIARRLAKLA- 74
Query: 483 NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSL--------IL 534
I+++ ++F E GY+G E + ++ ++ +
Sbjct: 75 --NAPFIKVEATKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVF 121
Query: 535 LDEIEK 540
+DEI+K
Sbjct: 122 IDEIDK 127
Score = 33.8 bits (78), Expect = 0.25
Identities = 19/105 (18%), Positives = 32/105 (30%), Gaps = 26/105 (24%)
Query: 36 RDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 95
+ +R + N ++IG GVGKT I LA + +
Sbjct: 40 LQEPLRHEVT------PKNILMIGPTGVGKTEIARRLA-----KLANAPFIKVEATKFTE 88
Query: 96 ALLLAGTKYRGEFEDRLKKILKEISNNQKDI-------IIFIDEL 133
+ ++ I + I I+FIDE+
Sbjct: 89 VGYVG--------KEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEI 125
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein,
structural genomics, PSI-2, protein structu initiative;
2.30A {Saccharomyces cerevisiae}
Length = 335
Score = 39.2 bits (92), Expect = 0.004
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 4/64 (6%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL-- 729
D HG + L +K K P+ ++F GD +++G S + L + + L
Sbjct: 71 DTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNR 130
Query: 730 GNHE 733
GNHE
Sbjct: 131 GNHE 134
>3i00_A HIP-I, huntingtin-interacting protein 1; transcription; 2.30A {Homo
sapiens} PDB: 2qa7_A
Length = 120
Score = 37.0 bits (85), Expect = 0.005
Identities = 18/113 (15%), Positives = 52/113 (46%), Gaps = 6/113 (5%)
Query: 259 DSKPEIMDKLERRLIQLKIEHEAIKREYD---ESSKKRLLLIKKEINKLEIKYANLEKIW 315
D K ++++L R + LK + E +K E K + ++ ++ + +
Sbjct: 11 DEKDHLIERLYREISGLKAQLENMKTESQRVVLQLKGHVSELEADLAEQQHLRQQAADDC 70
Query: 316 KYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKE 368
++ + + + ++ +E+ EK + +++ RK+ ++ +Y +L + L +
Sbjct: 71 EFLRAELDELRRQREDTEKAQRSLSEIERKA---QANEQRYSKLKEKYSELVQ 120
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 39.7 bits (93), Expect = 0.006
Identities = 23/114 (20%), Positives = 43/114 (37%), Gaps = 4/114 (3%)
Query: 263 EIMDKLERRLIQLK---IEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEK 319
++ LE +++QL+ E + E + E KL L + K
Sbjct: 921 KLHIGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAK 980
Query: 320 TLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKY-GELNKLERILKEKSQK 372
++EEI K+R ++++ + KY E +L LKE++
Sbjct: 981 NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTL 1034
Score = 37.4 bits (87), Expect = 0.027
Identities = 16/103 (15%), Positives = 45/103 (43%), Gaps = 5/103 (4%)
Query: 241 DKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESS---KKRLLLI 297
++ ++ EI + + + + ++ + K E ++ K++ L+
Sbjct: 976 EEEAKNATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLL 1035
Query: 298 KKEINKLEIKYANLEKIWK--YEKTLIKDSQQIKEEIEKVRLK 338
K E +L + + K EK L+++++Q++ ++ RL+
Sbjct: 1036 KTEKEELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLR 1078
Score = 34.3 bits (79), Expect = 0.22
Identities = 35/198 (17%), Positives = 71/198 (35%), Gaps = 22/198 (11%)
Query: 261 KPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKT 320
K I+ K R + H +K R ++ K+E+ KL+I+ ++E+ K
Sbjct: 866 KSIIIQKHVRGWLARVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIG 925
Query: 321 L---IKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLP 377
L I Q+ +E K + + + + E KL ++ + +
Sbjct: 926 LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYST-----ETEKLRSDVERLRMSEEEAK 980
Query: 378 NNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAIS 437
N N+ L+ EEIA+ + K + + + IE K ++ +S
Sbjct: 981 NATNRVLSLQ-----EEIAK---------LRKELHQTQTEKKTIEEWADKYKHETEQLVS 1026
Query: 438 AVSNAIRRSRSGLSDAKR 455
+ ++ + R
Sbjct: 1027 ELKEQNTLLKTEKEELNR 1044
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform;
protein-peptide docking, protein targeting, AKA
beta-augmentation, calmodulin-binding, membrane,
hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A*
1tco_A* 1mf8_A* 2jog_A
Length = 357
Score = 38.4 bits (90), Expect = 0.009
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 9/66 (13%)
Query: 674 DVHGCKKSLSILLK--KIHKKSPEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL 729
D+HG L+K ++ ++FLGD +++G S++ + + L
Sbjct: 77 DIHG---QFFDLMKLFEVGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFL 133
Query: 730 --GNHE 733
GNHE
Sbjct: 134 LRGNHE 139
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent
proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus
influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A*
1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E*
1ht1_E* 1ht2_E*
Length = 444
Score = 38.1 bits (89), Expect = 0.011
Identities = 22/50 (44%), Positives = 29/50 (58%), Gaps = 7/50 (14%)
Query: 429 VVGQDEAISAVSNAIR-R-SRSGLSDAKR----PYGSFMFLGPTGVGKTE 472
++GQ +A AV+ A+R R R L + R P M +GPTGVGKTE
Sbjct: 17 IIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILM-IGPTGVGKTE 65
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase
activation, cytochrome C, procaspase-9, A nucleotide,
cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A*
3iyt_A* 3iza_A*
Length = 1249
Score = 38.3 bits (89), Expect = 0.014
Identities = 13/119 (10%), Positives = 38/119 (31%), Gaps = 19/119 (15%)
Query: 34 IGRDDEIRRAIQVLQRRSKNNP--VLIGEPGVGKTAIVEGLAQ--RIINGEVPNSLLSKK 89
+ R + Q L + + + G G GK+ + + ++ G +
Sbjct: 127 VTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVS 186
Query: 90 I----------LLLDIALLLAGTKYRGE-----FEDRLKKILKEISNNQKDIIIFIDEL 133
I L ++ + L + + E+ ++ + ++ +D++
Sbjct: 187 IGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDV 245
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp,
clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B*
3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 37.6 bits (88), Expect = 0.017
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 9/60 (15%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 488
VVGQ+ ++A++N + R + A ++F G GVGKT + + L+ + N E I
Sbjct: 18 VVGQEHVLTALANGLSLGR--IHHA------YLFSGTRGVGKTSIARLLAKGL-NCETGI 68
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase,
immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Length = 521
Score = 37.5 bits (87), Expect = 0.019
Identities = 17/64 (26%), Positives = 34/64 (53%), Gaps = 5/64 (7%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR-NY-AKIVL-- 729
D+HG L L + + ++FLGD +++G S++ + +++++ Y + L
Sbjct: 90 DIHGQFFDLMKLFE-VGGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLR 148
Query: 730 GNHE 733
GNHE
Sbjct: 149 GNHE 152
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 35.7 bits (81), Expect = 0.021
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 13/39 (33%)
Query: 298 KKEINKLEIKYANLEKIWKYEKTLIKDSQ---QIKEEIE 333
K+ + KL+ A+L K+ Y DS IK +E
Sbjct: 19 KQALKKLQ---ASL-KL--YA----DDSAPALAIKATME 47
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 36.3 bits (83), Expect = 0.021
Identities = 15/69 (21%), Positives = 29/69 (42%), Gaps = 15/69 (21%)
Query: 274 QLKIEHEAIK----------REYDESSKKRLLLIKKEINK-LEIKYANLEKIWKYEKTLI 322
+L E E+I+ +E D +SK +++ K LE + + EK
Sbjct: 79 RLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSE--QVEKN-- 134
Query: 323 KDSQQIKEE 331
K + +I ++
Sbjct: 135 KINNRIADK 143
Score = 30.1 bits (67), Expect = 2.1
Identities = 10/58 (17%), Positives = 26/58 (44%), Gaps = 9/58 (15%)
Query: 241 DKAIDLIDEAAAKIKIEI--DSKPEIMD-------KLERRLIQLKIEHEAIKREYDES 289
K + +D A+ ++ E +K ++ + ++E+ I +I +A ++ D
Sbjct: 95 RKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQQPDAD 152
Score = 29.0 bits (64), Expect = 5.7
Identities = 16/101 (15%), Positives = 30/101 (29%), Gaps = 38/101 (37%)
Query: 103 KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELH 162
K+R E RL++ L S + E ++ +L
Sbjct: 89 KWREEQRKRLQE-LDAASKVMEQEWR--------------------------EKAKKDLE 121
Query: 163 CIGATTLNEYRQY---IEKDAAFERRFQKILVEEPDIEETI 200
++ +EK+ R K ++PD + I
Sbjct: 122 -------EWNQRQSEQVEKNKINNRIADKAFYQQPD-ADII 154
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 37.3 bits (86), Expect = 0.022
Identities = 22/124 (17%), Positives = 50/124 (40%), Gaps = 15/124 (12%)
Query: 31 DPVIGRDDEIRRAIQVLQR----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPN--- 83
D + R+D+IR+ +L NN + G G GKTA+V+ + ++ +
Sbjct: 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKH 79
Query: 84 ------SLLSKKILLLDIALLLAGTK--YRGEFEDRLKKILKEISNNQKDIIIFIDELHT 135
+ + +L D+ L + ++++K + + ++I +DE+
Sbjct: 80 VYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDA 139
Query: 136 MIGT 139
+
Sbjct: 140 FVKK 143
Score = 32.0 bits (72), Expect = 0.90
Identities = 33/211 (15%), Positives = 76/211 (36%), Gaps = 36/211 (17%)
Query: 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 486
+ +++ I +++ + ++P + G TG GKT + K + + +
Sbjct: 20 DELPHREDQIRKIASILAPLYRE----EKP-NNIFIYGLTGTGKTAVVKFVLSKLHKKFL 74
Query: 487 S---IIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV--------RRKPYSLILL 535
+ I+ + + + + G + E+ +I+L
Sbjct: 75 GKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVL 134
Query: 536 DEIE----KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGD 591
DEI+ K N D+ L +I + +N + +N +K ++ D
Sbjct: 135 DEIDAFVKKYNDDILYKLSRINSE----------VNKSKISFIGITN----DVKFVDLLD 180
Query: 592 KEIIKLAVMNEVKIYFRPEFINRIDDIIVFR 622
+ + ++E +I F P ++DI+ R
Sbjct: 181 PRV--KSSLSEEEIIFPPYNAEELEDILTKR 209
>2fna_A Conserved hypothetical protein; structural genomics, joint center
for structural genomics, J protein structure initiative,
PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus}
SCOP: a.4.5.11 c.37.1.20
Length = 357
Score = 37.0 bits (85), Expect = 0.027
Identities = 48/314 (15%), Positives = 113/314 (35%), Gaps = 40/314 (12%)
Query: 34 IGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 93
R+ EI + L+ +++G GK++ + + IN + +
Sbjct: 16 FDREKEIEK----LKGLRAPITLVLGLRRTGKSS----IIKIGINE--------LNLPYI 59
Query: 94 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLK 153
+ L + ++D L ++ KEI+ K + + L + G + I K
Sbjct: 60 YLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRK 119
Query: 154 PELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEET--ISILRGLQKKYE 211
+ + E+ + + +L E ++ + +++L L Y+
Sbjct: 120 DR-----------LSFANLLESFEQAS--KDNVIIVLDEAQELVKLRGVNLLPALAYAYD 166
Query: 212 VHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERR 271
++ I++ SE+ Y R ++ L A + ++++ S+ E ++ L R
Sbjct: 167 NLKRIKF----IMSGSEMGLLYDYLRVEDPESP-LFGRAFSTVELKPFSREEAIEFLRRG 221
Query: 272 LIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEE 331
+ I+ + + Y++ L + + NL+ +TL + I +E
Sbjct: 222 FQEADIDFKDYEVVYEKIGGIPGWL--TYFGFIYLDNKNLDFAI--NQTLEYAKKLILKE 277
Query: 332 IEKVRLKINKATRK 345
E A ++
Sbjct: 278 FENFLHGREIARKR 291
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR
complex, HMR, HML, TELO AAA+ domain, structural,
nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Length = 318
Score = 36.0 bits (82), Expect = 0.046
Identities = 42/304 (13%), Positives = 88/304 (28%), Gaps = 49/304 (16%)
Query: 29 KLDPVIGRDDEIRRAIQVLQR----RSKNNPVLIGEPGVGKTAIV----EGLAQRIINGE 80
K + + + ++ R + + K +V + L E
Sbjct: 18 KRELLKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKE 77
Query: 81 VPN---------SLLSKKILLLDIALLLAGTKYRGE--FEDRLKKILKEISNNQKDIIIF 129
+P L L I ++ G+ E I ++ +I
Sbjct: 78 LPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLIL 137
Query: 130 IDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIG-ATTLNEYRQYIEKDAAFERRFQK 188
I ++ ++ +L I R+ I + + F +
Sbjct: 138 IQNPENLLSEKILQYFEKW-----ISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTE 192
Query: 189 ILVEEPDIEETISI----LRGLQKKYEVHHGVEITDPAIVAASELSYRYI------SDRF 238
I + + D E + L+ L K + V + E + I +
Sbjct: 193 IKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKIPDNVIVINHK 252
Query: 239 MPDKAIDLIDEAAAKIK-------------IEIDSKPEIMDKLERRLIQLKIEHEAIKRE 285
+ +K LI + A + +EI SK + + K + +L + E + R
Sbjct: 253 INNKITQLIAKNVANVSGSTEKAFKICEAAVEI-SKKDFVRKGGLQKGKLVVSQEMVPRY 311
Query: 286 YDES 289
+ E+
Sbjct: 312 FSEA 315
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus
abyssi}
Length = 350
Score = 35.8 bits (82), Expect = 0.052
Identities = 38/328 (11%), Positives = 105/328 (32%), Gaps = 38/328 (11%)
Query: 34 IGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRI----------------- 76
R++E R+ + L+ + +L+G VGK++++
Sbjct: 15 FDREEESRKLEESLE--NYPLTLLLGIRRVGKSSLLRAFLNERPGILIDCRELYAERGHI 72
Query: 77 --------INGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 128
+ + + + + L + R + + L ++ + I+
Sbjct: 73 TREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIV 132
Query: 129 FIDELHTMIGTGKVEGS--IDAGNMLKPELSRGELHCIGATT---LNEYRQYIEKDAAFE 183
DE + G G + L ++ G+ + + + +
Sbjct: 133 AFDEAQYLRFYGSRGGKELLALFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYG 192
Query: 184 RRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKA 243
R ++LV+ D + ++ L+ ++ +++ + I A EL +
Sbjct: 193 RIAGEVLVKPFDKDTSVEFLKRGFREV----NLDVPENEIEEAVELLDGIPGWLVVFGVE 248
Query: 244 IDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINK 303
+ +K ++ ++ L + + I R R LI+ +
Sbjct: 249 YLRNGDFGRAMKRTLEVAKGLIMGELEELRRRSPRYVDILR-AIALGYNRWSLIRDYLA- 306
Query: 304 LEIKYANLEKIWKYEKTLIKDSQQIKEE 331
++ +++ + L K + ++E+
Sbjct: 307 VKGTKIPEPRLYALLENLKKMNWIVEED 334
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain,
ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus}
SCOP: c.37.1.20 PDB: 1nsf_A*
Length = 272
Score = 35.5 bits (82), Expect = 0.064
Identities = 29/156 (18%), Positives = 57/156 (36%), Gaps = 32/156 (20%)
Query: 451 SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP 510
+ + P S + GP GKT L ++ + I+I + +
Sbjct: 58 NSDRTPLVSVLLEGPPHSGKTALAAKIAE---ESNFPFIKICSPDKMI------------ 102
Query: 511 GYIGYEEGGYLTEI---VRRKPYSLILLDEIEK------ANSDVFNILLQILDDGRLTDN 561
G+ + + +I + S +++D+IE+ N++LQ L L
Sbjct: 103 GFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQAL----LVLL 158
Query: 562 RGRTINFRNTIIVMTSNLGSDKIKEMEKG---DKEI 594
+ R +I+ T++ D ++EME I
Sbjct: 159 KKAPPQGRKLLIIGTTSR-KDVLQEMEMLNAFSTTI 193
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 35.8 bits (83), Expect = 0.073
Identities = 19/82 (23%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 6 LDEEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKN--NPVLIGEPGV 63
+ +G T ++ +L +D VIG++ A++V++ + + +LIGEPG
Sbjct: 18 GESLELGIEFTTTEEIEVPEKL--IDQVIGQE----HAVEVIKTAANQKRHVLLIGEPGT 71
Query: 64 GKTAIVEGLAQRIINGEVPNSL 85
GK+ + + +A+ + + + L
Sbjct: 72 GKSMLGQAMAELLPTETLEDIL 93
Score = 29.3 bits (66), Expect = 6.5
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 11/50 (22%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLS 478
V+GQ+ A+ + A A + + +G G GK+ L + ++
Sbjct: 43 VIGQEHAVEVIKTA----------ANQKRHVLL-IGEPGTGKSMLGQAMA 81
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 35.2 bits (81), Expect = 0.086
Identities = 20/152 (13%), Positives = 44/152 (28%), Gaps = 34/152 (22%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 488
+ +E + + + + R + GP G GK C L IF
Sbjct: 16 LSHNEELTNFLKSLSDQPRD--------LPHLLLYGPNGTGKKTRCMALLESIFGPGVYR 67
Query: 489 IRIDMSEFIEKHSISRLIGAPPGYIGYE-----EGGYLTEIVRRK--------------- 528
++ID+ +F+ + + E G +++
Sbjct: 68 LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDS 127
Query: 529 ------PYSLILLDEIEKANSDVFNILLQILD 554
Y ++++E D L + ++
Sbjct: 128 KDGLAHRYKCVIINEANSLTKDAQAALRRTME 159
Score = 31.4 bits (71), Expect = 1.3
Identities = 12/57 (21%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Query: 22 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLI--GEPGVGKTAIVEGLAQRI 76
+K R L+ + ++ ++ L + ++ P L+ G G GK L + I
Sbjct: 5 VDKYRPKSLNALSHNEELTNF-LKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural
changes, replication; 1.95A {Escherichia coli} SCOP:
c.37.1.11 PDB: 1g8y_A 1olo_A
Length = 279
Score = 35.1 bits (80), Expect = 0.094
Identities = 27/160 (16%), Positives = 51/160 (31%), Gaps = 15/160 (9%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKI 115
L+ G GK+ + LA +I G LL L + L RL +
Sbjct: 34 ALVSPGGAGKSMLALQLAAQIAGGP---DLLEVGELPTGPVIYLPAEDPPTAIHHRLHAL 90
Query: 116 LKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQY 175
+S ++ + + +IG+ + + + LK + TL +
Sbjct: 91 GAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRAAE--GRRLMVLDTLRRFHIE 148
Query: 176 IEKDAAFERRFQKILVEEPDIEET-ISILRGLQKKYEVHH 214
E + + + +T SI+ +HH
Sbjct: 149 EENASGPMAQVIGRMEA--IAADTGCSIVF-------LHH 179
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown
function, NPPSFA, national PROJ protein structural and
functional analyses; 1.60A {Aquifex aeolicus} SCOP:
d.159.1.6
Length = 260
Score = 34.7 bits (79), Expect = 0.095
Identities = 11/67 (16%), Positives = 28/67 (41%), Gaps = 1/67 (1%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHE 733
+ L L I +K P+ + +G+++ + R + R + V+ +E
Sbjct: 13 NFKERFDLLPKLKGVIAEKQPDI-LVVVGNILKNEALEKEYERAHLARREPNRKVIHENE 71
Query: 734 IHLLDVL 740
++++ L
Sbjct: 72 HYIIETL 78
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 33.8 bits (78), Expect = 0.22
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 22 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRI 76
EK R LD V+G+D+ I+R ++R++ + + G PG GKTA LA+ +
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 33.0 bits (76), Expect = 0.28
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 22 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRI 76
EK R LD V+G+D+ I+R ++R++ + + G PG GKTA LA+ +
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein,
nuclear protein, neurogenesis, cytosk LIS1 binding,
differentiation; 2.24A {Rattus norvegicus}
Length = 189
Score = 32.8 bits (74), Expect = 0.30
Identities = 15/100 (15%), Positives = 49/100 (49%), Gaps = 1/100 (1%)
Query: 248 DEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIK 307
+ + ++ ++ I ++L + + +L+ ++ ++R + L ++ +N+ +
Sbjct: 87 YKQVSVLEDDLSQTRAIKEQLHKYVRELEQANDDLERAKRATIMS-LEDFEQRLNQAIER 145
Query: 308 YANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSD 347
A LE +++L+ Q++K+E +R ++ R+ +
Sbjct: 146 NAFLESELDEKESLLVSVQRLKDEARDLRQELAVRERQQE 185
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+
molecular machine, hexamer, asymmetric,, ATP-BIN
chaperone, metal-binding; HET: ADP; 3.25A {Escherichia
coli} PDB: 3hte_A
Length = 363
Score = 33.3 bits (77), Expect = 0.35
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 12/66 (18%)
Query: 421 IENLLCKRVVGQDEA---IS-AVSNAIRRSRSGLSD-----AKRPYGSFMFLGPTGVGKT 471
I N L V+GQ++A ++ AV N +R R+G + K + + +GPTG GKT
Sbjct: 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGK---SNILLIGPTGSGKT 65
Query: 472 ELCKTL 477
L +TL
Sbjct: 66 LLAETL 71
>2r44_A Uncharacterized protein; putative ATPase, structural genomics,
joint center for struc genomics, JCSG; HET: MSE PG4;
2.00A {Cytophaga hutchinsonii atcc 33406}
Length = 331
Score = 33.3 bits (77), Expect = 0.38
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 411 VQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGK 470
R K+ + + + K VVGQ I+ + I + G + G G+ K
Sbjct: 11 SLYYRNKIKEVIDEVGKVVVGQKYMINRLLIGI------CTG-----GHILLEGVPGLAK 59
Query: 471 TELCKTLSACI 481
T TL+ +
Sbjct: 60 TLSVNTLAKTM 70
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment
2, heavy meromyosin, essential light chain, motor
protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1
PDB: 3j04_A 3dtp_B 3dtp_A
Length = 1184
Score = 33.3 bits (76), Expect = 0.51
Identities = 21/128 (16%), Positives = 47/128 (36%), Gaps = 6/128 (4%)
Query: 249 EAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKY 308
+ K + E++ ++ L + E +A E K+ ++ + +LE +
Sbjct: 1049 KKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAKKEEELQAALARLEDET 1108
Query: 309 ANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKE 368
+ K + L ++E++E + NKA ++ L EL L+ L++
Sbjct: 1109 SQKNNALKKIRELESHISDLQEDLESEKAARNKAEKQ-----KRDLS-EELEALKTELED 1162
Query: 369 KSQKDIQL 376
Sbjct: 1163 TLDTTATQ 1170
Score = 32.9 bits (75), Expect = 0.62
Identities = 23/131 (17%), Positives = 54/131 (41%), Gaps = 14/131 (10%)
Query: 249 EAAAKIKIEIDSKPEIMDKLERRLIQL---KIEHEAIKREYD---ESSKKRLLLIKKEIN 302
E ++ ++ ++ E+ + E ++L K E E I E + E ++R ++ E
Sbjct: 892 EEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQLQAEKK 951
Query: 303 KLEIKYANLEKIWK-YEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNK 361
K++ + +LE+ + E K + K++ + D + +L K
Sbjct: 952 KMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMED-------QNNKLTK 1004
Query: 362 LERILKEKSQK 372
++L+E+
Sbjct: 1005 ERKLLEERVSD 1015
Score = 32.1 bits (73), Expect = 1.2
Identities = 29/154 (18%), Positives = 68/154 (44%), Gaps = 17/154 (11%)
Query: 245 DLIDEAAAKIKIE---IDSKPEIMDKLERRLIQLK--IEHEAIKREYDESSKKRLLLIKK 299
+++ E A+I+ E K++++++ L+ +E E R+ + K
Sbjct: 927 EILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTA---DG 983
Query: 300 EINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGEL 359
+I K+E +E + K L K+ + ++E + + + + K+ + ++KLK
Sbjct: 984 KIKKMEDDILIMED--QNNK-LTKERKLLEERVSDLTTNLAEEEEKA--KNLTKLK---- 1034
Query: 360 NKLERILKEKSQKDIQLPNNANKFTLLKTKVGSE 393
NK E ++ E + + + + +K K+ E
Sbjct: 1035 NKHESMISELEVRLKKEEKSRQELEKIKRKLEGE 1068
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 32.0 bits (72), Expect = 0.65
Identities = 17/92 (18%), Positives = 36/92 (39%), Gaps = 9/92 (9%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF------- 108
V+ G PGVG T + + V ++S ++ ++A R +
Sbjct: 7 VVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRDQMRKMDPET 66
Query: 109 -EDRLKKILKEISNNQKDIIIFIDELHTMIGT 139
+ K ++I+ K+ + +D H+ + T
Sbjct: 67 QKRIQKMAGRKIAEMAKESPVAVD-THSTVST 97
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 32.0 bits (73), Expect = 0.75
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 22 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRI 76
EK R L ++G + I R Q+ + + + ++ G PG+GKT V LA +
Sbjct: 12 VEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 32.0 bits (73), Expect = 0.78
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 22 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRI 76
EK R LD V G+++ I + + + + G PG GKT+ + LA+ I
Sbjct: 16 VEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREI 70
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding
loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori}
SCOP: c.37.1.20
Length = 376
Score = 31.8 bits (73), Expect = 0.90
Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 21/78 (26%)
Query: 421 IENLLCKRVVGQDEA---IS-AVSNAIRRSRSGLSDAKRPYGSF---------------- 460
++ +L V+GQ++A S AV N +R K+
Sbjct: 15 LKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSN 74
Query: 461 -MFLGPTGVGKTELCKTL 477
+ +GPTG GKT + +TL
Sbjct: 75 ILLIGPTGSGKTLMAQTL 92
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein
interactions, TPR, super-helix,; 2.9A {Homo sapiens}
SCOP: a.118.8.1 d.159.1.3
Length = 477
Score = 32.0 bits (73), Expect = 1.0
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 674 DVHGCKKSLSILLK--KIHKKSPEAN-FIFLGDLINKGPQSLDT--LRMVYSMRNYAKIV 728
D HG LL +++ E N +IF GD +++G S++ + +
Sbjct: 220 DTHG---QFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFH 276
Query: 729 L--GNHE 733
L GNHE
Sbjct: 277 LLRGNHE 283
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain,
PIN-tower interface, coupling hydrolysis to DNA
unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Length = 459
Score = 31.9 bits (72), Expect = 1.1
Identities = 26/137 (18%), Positives = 47/137 (34%), Gaps = 21/137 (15%)
Query: 431 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 490
GQ A + V AI+ + GP G G T L K + + + E+ I
Sbjct: 29 GQKNAFNIVMKAIKEKKHH----------VTINGPAGTGATTLTKFIIEALISTGETGII 78
Query: 491 ID---------MSEFIEKHS--ISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIE 539
+ +S+ K + I ++ P E+ +++ DE+
Sbjct: 79 LAAPTHAAKKILSKLSGKEASTIHSILKINPVTYEENVLFEQKEVPDLAKCRVLICDEVS 138
Query: 540 KANSDVFNILLQILDDG 556
+ +F ILL +
Sbjct: 139 MYDRKLFKILLSTIPPW 155
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus}
SCOP: a.80.1.1 c.37.1.20
Length = 327
Score = 31.6 bits (72), Expect = 1.2
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 22 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRI 76
EK R +LD ++G++ ++R ++ S + + G PGVGKT LA+ +
Sbjct: 16 VEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors,
drug design, cytoplasm, hydrolase, iron, manganese,
metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens}
PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A*
3h68_A* 3h69_A* 1s95_A
Length = 315
Score = 31.4 bits (72), Expect = 1.4
Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 10/67 (14%)
Query: 674 DVHGCKKSLSILLK--KIHKKSPEAN-FIFLGDLINKGPQSLDT--LRMVYSMRNYAKIV 728
D HG LL +++ E N +IF GD +++G S++ + +
Sbjct: 67 DTHG---QFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFH 123
Query: 729 L--GNHE 733
L GNHE
Sbjct: 124 LLRGNHE 130
>2xs1_A Programmed cell death 6-interacting protein; protein
transport-viral protein complex, cell cycle; 2.30A {Homo
sapiens} PDB: 2xs8_A 2oev_A 2r05_A 2r02_A 2r03_A 2oex_A
2ojq_A
Length = 704
Score = 31.5 bits (70), Expect = 1.4
Identities = 18/113 (15%), Positives = 42/113 (37%), Gaps = 3/113 (2%)
Query: 263 EIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLI 322
E ++ L + ++ + + + +N L+ +NL+++ K + L
Sbjct: 517 ECYQSHRDTIVLLCKPEPELNAAIPSANPAKTMQGSEVVNVLKSLLSNLDEVKKEREGLE 576
Query: 323 KDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQ 375
D +K + K A + L EL+++ L K Q+ ++
Sbjct: 577 ND---LKSVNFDMTSKFLTALAQDGVINEEALSVTELDRVYGGLTTKVQESLK 626
>3err_A Fusion protein of microtubule binding domain from mouse cytoplasmic
dynein and seryl-tRNA...; coiled coil, ligase; HET: AMP;
2.27A {Mus musculus}
Length = 536
Score = 31.2 bits (71), Expect = 1.6
Identities = 20/155 (12%), Positives = 56/155 (36%), Gaps = 11/155 (7%)
Query: 193 EPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252
EP + E + ++ ++K++ V PA V + S + D I
Sbjct: 59 EPAVIEAQNAVKSIKKQHLVEVRSMANPPAAVKLALESIALLLGESTTD--WKQIRSIIM 116
Query: 253 KIKIEIDSK--------PEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKL 304
+ I +K+++ + + I ++ + ++N
Sbjct: 117 RENFIPTIVNFSAEEISDAIREKMKKNYMSNPSYNYEIVNRASLAAGPMVKWAIAQLNYA 176
Query: 305 EIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKI 339
++ +E + + L D++ ++++E + L++
Sbjct: 177 DML-KRVEPLRNELQKLEDDAKDNQQKLEALLLQV 210
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 30.6 bits (70), Expect = 1.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 49 RRSKNNPVLIGEPGVGKTAIVEGLAQR 75
+++ N LIG G GKT++ LA+
Sbjct: 2 KKNLTNIYLIGLMGAGKTSVGSQLAKL 28
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA;
2.80A {Staphylococcus aureus}
Length = 514
Score = 31.3 bits (72), Expect = 1.7
Identities = 17/97 (17%), Positives = 43/97 (44%), Gaps = 28/97 (28%)
Query: 242 KAIDLIDEAAAKIKI---EIDSKPEIMDK-----------LERRLIQL-KIEHEAIKREY 286
KA+ ++D+ I+ + D+K +++ + +L +L + A++ E+
Sbjct: 404 KALSILDKVIELIRSSKNKRDAKENLIEVYEFTEEQAEAIVMLQLYRLTNTDIVALEGEH 463
Query: 287 DE-------------SSKKRLLLIKKEINKLEIKYAN 310
E + L +IK+E+N+++ K+ +
Sbjct: 464 KELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKS 500
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase,
PSI, protein structure initiative, midwest center for
structural genomics, MCSG; 2.25A {Escherichia coli}
SCOP: d.159.1.7
Length = 208
Score = 30.5 bits (69), Expect = 1.8
Identities = 13/67 (19%), Positives = 28/67 (41%), Gaps = 9/67 (13%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSL--------DTLRMVYSMRNYA 725
D+HG + +L+ + + + LGD++N GP++ + + + +
Sbjct: 33 DIHGSLPATERVLELFAQSGAQW-LVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKV 91
Query: 726 KIVLGNH 732
V GN
Sbjct: 92 IAVRGNC 98
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 30.9 bits (70), Expect = 1.8
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 22 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRI 76
EK R LD V +D + + L+ + + + G PG GKT+ + L + +
Sbjct: 28 VEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 30.3 bits (68), Expect = 1.9
Identities = 9/26 (34%), Positives = 12/26 (46%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEV 81
+ G GVGKT L +R+ V
Sbjct: 9 WINGPFGVGKTHTAHTLHERLPGSFV 34
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding,
nucleotide-binding, HY; HET: ADP; 3.11A
{Methanocaldococcus jannaschii}
Length = 285
Score = 30.7 bits (70), Expect = 2.3
Identities = 42/174 (24%), Positives = 63/174 (36%), Gaps = 57/174 (32%)
Query: 57 LIGEPGVGKTAIVEGLAQRI------INGEVPNSLLSKKILLLDIALLLAGTKYRGEFED 110
L G PG GKT + + +A + G + L+ K+ GE
Sbjct: 56 LYGPPGTGKTLLAKAVATETNATFIRVVG---SELVK---------------KFIGEGAS 97
Query: 111 RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGN-----MLKPEL--------S 157
+K I K IIFIDE+ I + + ++ +L +
Sbjct: 98 LVKDIFKLAKEKAPS-IIFIDEIDA-IAAKRTDALTGGDREVQRTLM--QLLAEMDGFDA 153
Query: 158 RGELHCIGAT----TLNEYRQYIEKDAAFER--RF-QKILVEEPDIEETISILR 204
RG++ IGAT L D A R RF + I V PD + + IL+
Sbjct: 154 RGDVKIIGATNRPDIL---------DPAILRPGRFDRIIEVPAPDEKGRLEILK 198
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 30.5 bits (69), Expect = 2.3
Identities = 45/276 (16%), Positives = 80/276 (28%), Gaps = 77/276 (27%)
Query: 57 LIGEPGVGKTAIVEGLAQ-------RIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE 109
+ G G GK+ E + + + GE L S GE
Sbjct: 41 IWGGKGQGKSFQCELVFRKMGINPIMMSAGE----LESG---------------NAGEPA 81
Query: 110 DRLKKILKEISNNQKDI---IIFIDELHTMIGTGKVEGSIDAGN--------MLKPELSR 158
+++ +E + + +FI++L G N + +
Sbjct: 82 KLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN 141
Query: 159 GELHC------------IGAT----TLNEYRQYIEKDAAFER--RFQKILVEEPDIEETI 200
+L I TL A R R +K P E+ I
Sbjct: 142 VQLPGMYNKQENARVPIIVTGNDFSTL---------YAPLIRDGRMEK-FYWAPTREDRI 191
Query: 201 SILRGLQKKYEV--HHGVEITD-------PAIVAASELSYRYISDRFMPDKAIDLIDEAA 251
+ G+ + V V+I D A Y +++ I+ I +
Sbjct: 192 GVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVSGTGIEKIGDKL 251
Query: 252 AKIKIEIDS--KPEI-MDKLERRLIQLKIEHEAIKR 284
+ +P++ ++KL L E E +KR
Sbjct: 252 LNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKR 287
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 29.8 bits (68), Expect = 2.4
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 51 SKNNPVLIGEPGVGKTAIVEGLAQR 75
K N L+G G GK+ I LAQ+
Sbjct: 3 EKRNIFLVGPMGAGKSTIGRQLAQQ 27
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 29.7 bits (66), Expect = 2.8
Identities = 16/84 (19%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
Query: 47 LQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPN--SLLSKKILLLDIALLLAGTKY 104
+++ N ++ G PG GKT++ E +A + + L+ + + L
Sbjct: 5 MEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDTELDTHII 64
Query: 105 RGEFEDRLKKILKEISNNQKDIII 128
+ EDRL ++ I ++ + ++
Sbjct: 65 EEKDEDRLLDFMEPIMVSRGNHVV 88
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV,
GRAM-positive bacteria, quinolone target, DNA binding,
DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae}
PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A*
3rad_A* 3rae_A* 3raf_A*
Length = 496
Score = 30.5 bits (70), Expect = 2.9
Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 28/97 (28%)
Query: 242 KAIDLIDEAAAKI---KIEIDSKPEIMDK-----------LERRLIQL-KIEHEAIKREY 286
+ I ++DE A I + + D+K + + +L +L + ++ E
Sbjct: 380 RVISILDEVIALIRASENKADAKENLKVSYDFTEEQAEAIVTLQLYRLTNTDVVVLQEEE 439
Query: 287 DE-------------SSKKRLLLIKKEINKLEIKYAN 310
E + L+KKE+ +++ K+A
Sbjct: 440 AELREKIAMLAAIIGDERTMYNLMKKELREVKKKFAT 476
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein
structure initiati YORK structural genomics research
consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 30.0 bits (67), Expect = 2.9
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 38 DEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRI 76
++ RR + V++G G GK+++ E +A+
Sbjct: 4 SIEYKSEAAAVRRFPGSIVVMGVSGSGKSSVGEAIAEAC 42
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 29.8 bits (68), Expect = 3.2
Identities = 8/27 (29%), Positives = 13/27 (48%), Gaps = 3/27 (11%)
Query: 451 SDAKRPYGSFMFLGPTGVGKTELCKTL 477
S ++ + LG GVG+ + TL
Sbjct: 2 SHMRKT---LVLLGAHGVGRRHIKNTL 25
>3lpp_A Sucrase-isomaltase; glycoside hydrolase family 31,
alpha-glucosidase membrane, disease mutation, disulfide
bond, glycoprotein, glycosidase; HET: NAG BMA MAN KTL;
2.15A {Homo sapiens} PDB: 3lpo_A*
Length = 898
Score = 30.6 bits (69), Expect = 3.3
Identities = 31/131 (23%), Positives = 51/131 (38%), Gaps = 20/131 (15%)
Query: 522 TEIVRRKPYSLIL-LDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG 580
T R+ P LI+ L E A D F DDG T + + N+ +++N
Sbjct: 773 TTASRKNPLGLIVALGENNTAKGDFF------WDDG-ETKDTIQNGNYILYTFSVSNN-- 823
Query: 581 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI---------DDIIVFRYLNRKNILS 631
+ I +E LA VKI + + + + F Y +L
Sbjct: 824 TLDIVCTHSSYQEGTTLAF-QTVKILGLTDSVTEVRVAENNQPMNAHSNFTYDASNQVLL 882
Query: 632 IANIQLNILKN 642
IA+++LN+ +N
Sbjct: 883 IADLKLNLGRN 893
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 30.6 bits (69), Expect = 3.3
Identities = 7/22 (31%), Positives = 11/22 (50%)
Query: 459 SFMFLGPTGVGKTELCKTLSAC 480
+ + +G G GKT KT+
Sbjct: 925 ALILVGKAGCGKTATWKTVIDA 946
>3gqb_B V-type ATP synthase beta chain; A3B3, V-ATPase, ATP synthesis,
ATP-binding, hydrogen ION TRA hydrolase, ION transport;
2.80A {Thermus thermophilus HB8} PDB: 3a5c_D* 3a5d_D
3j0j_D*
Length = 464
Score = 30.4 bits (69), Expect = 3.3
Identities = 12/37 (32%), Positives = 18/37 (48%)
Query: 170 NEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL 206
R+Y++ AFER F + IEE++ I L
Sbjct: 406 ENDRRYLQFADAFERFFINQGQQNRSIEESLQIAWAL 442
>2xxp_A CPS2A; replication, peptidoglycan, LCP, LYTR; HET: DSL PEG; 1.69A
{Streptococcus pneumoniae} PDB: 3tep_A* 3tfl_A* 2xxq_A*
3tel_A* 4de8_A*
Length = 398
Score = 30.2 bits (68), Expect = 3.4
Identities = 11/50 (22%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 536 DEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585
+ + + + FNI + +D + R+ + I+MT N + KI
Sbjct: 120 EAPKTSKNQSFNIYVSGIDTYGPISSVSRS----DVNILMTVNRDTKKIL 165
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 29.5 bits (67), Expect = 3.4
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 52 KNNPVLIGEPGVGKTAIVEGLAQR 75
VL+G PG GK+ I LA+
Sbjct: 2 APKAVLVGLPGSGKSTIGRRLAKA 25
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently
linked comple supercoiling; HET: DNA PTR TSP; 2.48A
{Saccharomyces cerevisiae} PDB: 3l4k_A* 1bjt_A 1bgw_A
2rgr_A*
Length = 757
Score = 30.4 bits (68), Expect = 3.6
Identities = 18/152 (11%), Positives = 39/152 (25%), Gaps = 17/152 (11%)
Query: 188 KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLI 247
++ V I L L G +E +
Sbjct: 617 ELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSH 676
Query: 248 DEAAAKIKIEIDSKPEIMDKLERRLIQL-KIEHEAIKREYDESSKKRLLLIKKEINKLEI 306
++ I + L R+ L K ++ + ++ E + E+ L
Sbjct: 677 EDTENVINGPEELYGTYEYLLGMRIWSLTKERYQKLLKQKQE--------KETELENLLK 728
Query: 307 KYANLEKIWKYEKTLIKDSQQIKEEIEKVRLK 338
A + IW D + + ++ +
Sbjct: 729 LSA--KDIWN------TDLKAFEVGYQEFLQR 752
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia
chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 29.5 bits (67), Expect = 3.7
Identities = 6/24 (25%), Positives = 10/24 (41%)
Query: 52 KNNPVLIGEPGVGKTAIVEGLAQR 75
++G G G T + LA+
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARA 25
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 30.0 bits (67), Expect = 4.1
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 18/103 (17%)
Query: 38 DEIRRAIQVL-----QRRSKNNPVLI-GEPGVGKTAIVEGLAQ--------RIINGEVPN 83
+ R A V+ ++ VL+ G PG GKTA+ +AQ + G
Sbjct: 43 ENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102
Query: 84 SLLSKKILLLDIALLLA-GTKYRGE---FEDRLKKILKEISNN 122
S KK +L A G + + +E + ++ + N
Sbjct: 103 STEIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETEN 145
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48, ATP-binding, lipid-binding, nucle binding,
nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus
musculus}
Length = 301
Score = 29.5 bits (67), Expect = 4.7
Identities = 28/110 (25%), Positives = 48/110 (43%), Gaps = 20/110 (18%)
Query: 127 IIFIDELHTMIGTGKVEGSIDAG-------NMLKPEL----SRGELHCIGATTLNEYRQY 175
++F DEL + I + D G N + E+ ++ + IGAT N R
Sbjct: 111 VLFFDELDS-IAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGAT--N--RPD 165
Query: 176 IEKDAAFER--RFQKIL-VEEPDIEETISILRGLQKKYEVHHGVEITDPA 222
I D A R R +++ + PD + ++IL+ +K V V++ A
Sbjct: 166 I-IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLA 214
>4ad1_A Glycosyl hydrolase family 71; glycoside hydrolase GH99, CAZY,
enzyme-carbohydra interaction, mannose glycosidase
inhibition; 1.90A {Bacteroides xylanisolvens} PDB:
4ad2_A* 4ad3_A* 4ad4_A* 4ad5_A*
Length = 380
Score = 29.7 bits (66), Expect = 5.0
Identities = 19/129 (14%), Positives = 46/129 (35%), Gaps = 10/129 (7%)
Query: 786 GVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFI 845
+A W +Q + ++ IL + K + + + + N + + +
Sbjct: 120 VLALTWWNEQDETEAKRIGLILDAADKKKIKVCFHLEPYPSRNVQ------NLRENIVKL 173
Query: 846 INTLTR-TRFCKIDG---TIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL 901
I F + DG + I+ + ++ P + R T ++ G W++
Sbjct: 174 ITRYGNHPAFYRKDGKPLFFIYDSYLIEPSEWEKLLSPGGSITIRNTAYDALMIGLWTSS 233
Query: 902 GLIMKPNII 910
+ +P I+
Sbjct: 234 PTVQRPFIL 242
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 29.1 bits (66), Expect = 5.0
Identities = 5/18 (27%), Positives = 11/18 (61%)
Query: 460 FMFLGPTGVGKTELCKTL 477
+ +G +GVG++ + L
Sbjct: 22 LVLIGASGVGRSHIKNAL 39
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 29.7 bits (67), Expect = 5.0
Identities = 7/50 (14%), Positives = 13/50 (26%), Gaps = 8/50 (16%)
Query: 432 QDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACI 481
+ + + R A + G+G L LS +
Sbjct: 7 LRPDFEKLVASYQAGR--GHHA------LLIQALPGMGDDALIYALSRYL 48
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE;
1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 29.1 bits (66), Expect = 5.1
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 51 SKNNPVLIGEPGVGKTAIVEGLAQRI 76
N V IG G GK+ + LA+ +
Sbjct: 3 LAKNIVFIGFMGSGKSTLARALAKDL 28
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide,
carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Length = 394
Score = 29.6 bits (67), Expect = 5.2
Identities = 14/50 (28%), Positives = 22/50 (44%), Gaps = 8/50 (16%)
Query: 237 RFMPDKAIDLIDEAAAKIKIEIDSK-------PEIMDKLERRLIQLKIEH 279
F K + + +A AKI E+D+K PE + + + L IE
Sbjct: 219 NFRKVKRVQDVVQAFAKIVTEVDAKLLLVGDGPE-FCTILQLVKNLHIED 267
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase,
shikimat ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 29.3 bits (66), Expect = 5.6
Identities = 9/35 (25%), Positives = 19/35 (54%)
Query: 41 RRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQR 75
++A +V + + L+G G GKT + + +A+
Sbjct: 37 KKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARS 71
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 28.9 bits (64), Expect = 6.0
Identities = 10/21 (47%), Positives = 12/21 (57%)
Query: 56 VLIGEPGVGKTAIVEGLAQRI 76
+L G PG GK+ I E LA
Sbjct: 13 LLSGHPGSGKSTIAEALANLP 33
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 28.5 bits (64), Expect = 6.0
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 56 VLIGEPGVGKTAIVEGLAQR 75
+L G K+ + L++
Sbjct: 5 ILEGPDCCFKSTVAAKLSKE 24
>4d9i_A Diaminopropionate ammonia-lyase; fold type II PLP-dependent enzyme,
tryptophan synthase beta like PLP-dependent enzymes
superfamily; HET: IT1; 2.00A {Escherichia coli} PDB:
4d9g_A* 4d9n_A* 4d9k_A* 4d9m_A*
Length = 398
Score = 29.4 bits (66), Expect = 6.2
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 37 DDEIRRAIQVLQRRSKNNPVLIGEP-GVGKTAIVEGLAQRIINGEVPNSLL---SKKILL 92
D ++VL N+P +I G ++ + + L +L+
Sbjct: 314 DSVAALGMRVLGNPYGNDPRIISGESGAVGLGVLAAVHYHPQRQSLMEKLALNKDAVVLV 373
Query: 93 L 93
+
Sbjct: 374 I 374
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA
topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus
aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Length = 692
Score = 29.6 bits (67), Expect = 6.3
Identities = 18/97 (18%), Positives = 38/97 (39%), Gaps = 28/97 (28%)
Query: 242 KAIDLIDEAAAKIKIEIDS---KPEIMDK-----------LERRLIQL-KIEHEAIKREY 286
A+D IDE + I+ + + L+ RL +L +E + I+ EY
Sbjct: 587 IALDHIDEIISTIRESDTDKVAMESLQQRFKLSEKQAQAILDMRLRRLTGLERDKIEAEY 646
Query: 287 DE-------------SSKKRLLLIKKEINKLEIKYAN 310
+E + L L++ E+ ++ ++ +
Sbjct: 647 NELLNYISELETILADEEVLLQLVRDELTEIRDRFGD 683
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 29.5 bits (66), Expect = 6.7
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 8/51 (15%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSF--------MFLGPTGVGKT 471
V G ++ + N + + ++ + G M GP G+GKT
Sbjct: 41 VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT 91
Score = 29.1 bits (65), Expect = 7.8
Identities = 14/70 (20%), Positives = 21/70 (30%), Gaps = 17/70 (24%)
Query: 22 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP----------------VLI-GEPGVG 64
T K L V G + + L + ++ G PG+G
Sbjct: 30 TVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIG 89
Query: 65 KTAIVEGLAQ 74
KT +AQ
Sbjct: 90 KTTAAHLVAQ 99
>2v1u_A Cell division control protein 6 homolog; DNA replication,
nucleotide-binding, replication, archaea; HET: ADP;
3.10A {Aeropyrum pernix}
Length = 387
Score = 29.4 bits (65), Expect = 6.8
Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Query: 31 DPVIGRDDEIRRAIQVLQR----RSKNNPVLIGEPGVGKTAIVEGLAQRI 76
D + R+ E+RR +VL +N +L G G GKTA+ + +R+
Sbjct: 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic
resistance, breakage-reunion domain, struct genomics;
HET: DNA; 1.60A {Mycobacterium tuberculosis} PDB:
3ifz_A*
Length = 470
Score = 29.0 bits (66), Expect = 7.3
Identities = 13/96 (13%), Positives = 38/96 (39%), Gaps = 28/96 (29%)
Query: 242 KAIDLIDEAAAKIKIEIDS---KPEIMDK-----------LERRLIQL-KIEHEAIKREY 286
KA+D +DE A I+ + +++ L+ +L +L +E + I +
Sbjct: 366 KALDALDEVIALIRASETVDIARAGLIELLDIDEIQAQAILDMQLRRLAALERQRIIDDL 425
Query: 287 DE-------------SSKKRLLLIKKEINKLEIKYA 309
+ +++ +++ E+ ++ ++
Sbjct: 426 AKIEAEIADLEDILAKPERQRGIVRDELAEIVDRHG 461
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.4 bits (65), Expect = 7.3
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 461 MFLGPTGVGKTELCKTL 477
+ +G + GKT L +TL
Sbjct: 142 VIVGGSQTGKTSLSRTL 158
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta
proteins (A/B), protein binding, transferase,
phosphotransferase; HET: ADP; 1.76A {Homo sapiens} PDB:
3iik_A 3iil_A* 3iim_A* 1rkb_A
Length = 180
Score = 28.5 bits (63), Expect = 7.6
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 47 LQRRSKNNPVLIGEPGVGKTAIVEGLAQRI 76
+ N +L G PGVGKT + + LA +
Sbjct: 6 PEFMLLPNILLTGTPGVGKTTLGKELASKS 35
Score = 28.5 bits (63), Expect = 8.0
Identities = 26/156 (16%), Positives = 55/156 (35%), Gaps = 23/156 (14%)
Query: 464 GPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTE 523
G GVGKT L K L+ ++ + I++ + + + Y GY+E
Sbjct: 18 GTPGVGKTTLGKELA-----SKSGLKYINVGDLAREEQL---------YDGYDEEYDCPI 63
Query: 524 IVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFR---NTIIVMTSNLG 580
+ + +DE++ + I+ D R N + G
Sbjct: 64 LDEDRV-----VDELDNQMREGGVIVDYHGCDFFPERWFHIVFVLRTDTNVLYERLETRG 118
Query: 581 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID 616
++ K + EI + + E ++ E ++++
Sbjct: 119 YNEKKLTDNIQCEIFQ-VLYEEATASYKEEIVHQLP 153
>1p9r_A General secretion pathway protein E; bacterial type II secretion
system cytoplasmic protein - GSPE, putative ATPase/ ATP
binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11
PDB: 1p9w_A*
Length = 418
Score = 29.1 bits (66), Expect = 7.8
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 4/20 (20%)
Query: 454 KRPYGSFMFL--GPTGVGKT 471
KRP+G + L GPTG GK+
Sbjct: 164 KRPHG--IILVTGPTGSGKS 181
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor,
microtubles, motor protein; HET: ADP SPM; 2.81A
{Dictyostelium discoideum} PDB: 3vkh_A* 3vkh_C*
Length = 3245
Score = 29.5 bits (66), Expect = 7.9
Identities = 8/28 (28%), Positives = 12/28 (42%)
Query: 459 SFMFLGPTGVGKTELCKTLSACIFNNEE 486
M +GP+G GKT + I +
Sbjct: 908 GVMMVGPSGGGKTTSWEVYLEAIEQVDN 935
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 28.4 bits (64), Expect = 8.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 56 VLIGEPGVGKTAIV 69
VLIGE GVGK+ +
Sbjct: 41 VLIGEQGVGKSTLA 54
>2i71_A Hypothetical protein; structural genomics, APC6294, PSI-2, protein
structure initia midwest center for structural genomics,
MCSG; 1.70A {Sulfolobus solfataricus} SCOP: e.72.1.1
Length = 400
Score = 29.0 bits (64), Expect = 8.6
Identities = 13/90 (14%), Positives = 31/90 (34%), Gaps = 2/90 (2%)
Query: 483 NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKAN 542
+ E + ++ H++ +I G + + + E K I+ +E++K
Sbjct: 277 SENEINVVYKDMKYALSHALFYVISRFSGNVDLDTLRHYAETYADKVTRAIIENEVDKIE 336
Query: 543 SDVFNILLQILDDGRLTDNRGRTINFRNTI 572
++L G G+ + R
Sbjct: 337 KYQMGSERKLL--GEYMKVEGKGFDKRILY 364
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 28.8 bits (64), Expect = 8.7
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLS 478
+VGQ A A + R G K + + G G GKT + ++
Sbjct: 46 MVGQLAARRAAGVVLEMIREG----KIAGRAVLIAGQPGTGKTAIAMGMA 91
>1c1g_A Tropomyosin; contractIle protein; 7.00A {Sus scrofa} SCOP: h.1.5.1
PDB: 2tma_A 2w49_A 2w4u_A
Length = 284
Score = 28.8 bits (64), Expect = 8.7
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 8/114 (7%)
Query: 265 MDKLERRLIQLKIEHEAIKREYDESSKK------RLLLIKKEINKLEIKYANLEKIWKYE 318
MD +++++ LK++ E DE+ R ++ E+ L+ K E
Sbjct: 1 MDAIKKKMQMLKLDKENALDRADEAEADKKAAEDRSKQLEDELVSLQKKLKATEDELDKY 60
Query: 319 KTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQK 372
+KD+Q+ E EK + +L EL++ + L QK
Sbjct: 61 SEALKDAQEKLELAEKKATDAEA--DVASLNRRIQLFEEELDRAQERLATALQK 112
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase,
hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli}
SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Length = 608
Score = 28.9 bits (65), Expect = 9.2
Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 24 KARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLI--GEPGVGKTAIVEGL 72
L KL PV + + A V + + + G PG GKT V L
Sbjct: 138 AQTLDKLFPVSDEINWQKVAAAV----ALTRRISVISGGPGTGKTTTVAKL 184
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial
conjugation, F1-ATPase-like quaternary structure, ring
helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB:
1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Length = 437
Score = 28.7 bits (64), Expect = 9.3
Identities = 12/73 (16%), Positives = 27/73 (36%), Gaps = 7/73 (9%)
Query: 439 VSNAIRRSRSGLSDAKRPYGS------FMFLGPTGVGKTELCKTLSACIFNNEESIIRID 492
+ R ++ A P + G TG GK+ L + L+ + ++ +D
Sbjct: 29 LKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 88
Query: 493 MS-EFIEKHSISR 504
+ + + K +
Sbjct: 89 PNGDMLSKFGRDK 101
>3pe5_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati northeast structural genomics
consortium, NESG; 2.38A {Clostridium leptum}
Length = 403
Score = 28.8 bits (64), Expect = 9.4
Identities = 11/51 (21%), Positives = 25/51 (49%), Gaps = 4/51 (7%)
Query: 535 LDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585
+D + V NI+L D+ GR+ +T+++++ + + K+K
Sbjct: 98 IDGTLIKDPMVLNIMLFGSDERPGETGYGRS----DTMMLLSIDNRNKKLK 144
>3kmi_A Putative membrane protein COG4129; structural genomics, PSI-2,
protein structure initiative, MI center for structural
genomics, MCSG; HET: MSE; 1.96A {Clostridium difficile}
Length = 177
Score = 28.1 bits (63), Expect = 9.7
Identities = 7/56 (12%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 103 KYRGEFEDRLKKILKEIS------NNQKDIIIFIDELHTMIGTGKVEGSIDAGNML 152
+ + + ++ + +L +I+ + + L+++I + E + N L
Sbjct: 12 EVQKKLQEEVSIVLIDIADIIVNPKKENGYSRDLYTLNSLIDSSISETYDNINNTL 67
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling
protein; HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 27.9 bits (63), Expect = 9.9
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 56 VLIGEPGVGKTAIV 69
+L+GE GVGK+ +
Sbjct: 6 MLVGESGVGKSTLA 19
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.138 0.390
Gapped
Lambda K H
0.267 0.0797 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 14,534,797
Number of extensions: 951314
Number of successful extensions: 3628
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3499
Number of HSP's successfully gapped: 304
Length of query: 938
Length of database: 6,701,793
Length adjustment: 103
Effective length of query: 835
Effective length of database: 3,825,930
Effective search space: 3194651550
Effective search space used: 3194651550
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)