RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14500
(938 letters)
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 417 bits (1072), Expect = e-138
Identities = 218/391 (55%), Positives = 295/391 (75%), Gaps = 8/391 (2%)
Query: 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLA 73
L++Y IDLT A GKLDPVIGRD+EIRR IQ+L RR+KNNPVLIGEPGVGKTAIVEGLA
Sbjct: 5 LEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLA 64
Query: 74 QRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 133
QRI+ G+VP L K+I+ L + LLAG KYRGEFE+RLK +++E+ +Q ++I+FIDEL
Sbjct: 65 QRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDEL 124
Query: 134 HTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEE 193
HT++G GK EG++DAGNMLKP L+RGEL IGATTL+EYR+ KD A ERRFQ + V+E
Sbjct: 125 HTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYREIE-KDPALERRFQPVYVDE 183
Query: 194 PDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 253
P +EETISILRGL++KYEVHHGV I+D AI+AA+ LS+RYI++R +PDKAIDLIDEAAA+
Sbjct: 184 PTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRLPDKAIDLIDEAAAR 243
Query: 254 IKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEK 313
+++ ++S PE +D LER+ +QL+IE EA+K+E D S++RL I+ EI KL + A L
Sbjct: 244 LRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRA 303
Query: 314 IWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKD 373
W+ E+ +++ ++ + +++VR +I A R+ D ++L+YGEL KLE ++ S+K
Sbjct: 304 EWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK- 362
Query: 374 IQLPNNANKFTLLKTKVGSEEIAEIVSRTTG 404
++ +V E+IAEIVSR TG
Sbjct: 363 ------LRGARFVRLEVTEEDIAEIVSRWTG 387
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 296 bits (760), Expect = 2e-94
Identities = 135/268 (50%), Positives = 184/268 (68%), Gaps = 3/268 (1%)
Query: 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLA 73
L+ +T +L + AR+G +DP+IGR+ E+ RAIQVL RR KNNP+L+GE GVGKTAI EGLA
Sbjct: 1 LENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLA 60
Query: 74 QRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 133
RI+ G+VP + I LDI LLAGTKYRG+FE R K +LK++ + + I+FIDE+
Sbjct: 61 WRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEI 119
Query: 134 HTMIGTGKVEG-SIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVE 192
HT+IG G G +DA N++KP LS G++ IG+TT E+ EKD A RRFQKI +
Sbjct: 120 HTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDIT 179
Query: 193 EPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 252
EP IEET+ I+ GL+ KYE HH V T A+ AA EL+ +YI+DR +PDKAID+IDEA A
Sbjct: 180 EPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGA 239
Query: 253 KIKIEIDSKP-EIMDKLERRLIQLKIEH 279
+ ++ SK + ++ + + +I
Sbjct: 240 RARLMPVSKRKKTVNVADIESVVARIAR 267
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 271 bits (695), Expect = 2e-84
Identities = 163/273 (59%), Positives = 218/273 (79%), Gaps = 2/273 (0%)
Query: 405 IPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLG 464
IPVSK+++ EREKLL +E L KRVVGQDEAI AV++AIRR+R+GL D RP GSF+FLG
Sbjct: 1 IPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLG 60
Query: 465 PTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEI 524
PTGVGKTEL KTL+A +F+ EE++IRIDM+E++EKH++SRLIGAPPGY+GYEEGG LTE
Sbjct: 61 PTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA 120
Query: 525 VRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 584
VRR+PYS+IL DEIEKA+ DVFNILLQILDDGRLTD+ GRT++FRNT+I++TSNLGS I
Sbjct: 121 VRRRPYSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLI 180
Query: 585 KE--MEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKN 642
E + E I+ V ++ +FRPEF+NR+D+I+VFR L ++ I I IQL+ L+
Sbjct: 181 LEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRA 240
Query: 643 KLLKMNMDLKISKAALKKISNIGFDLIYGARDV 675
+L + + L++++AA ++ G+D ++GAR +
Sbjct: 241 RLAEKRISLELTEAAKDFLAERGYDPVFGARPL 273
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId:
562]}
Length = 195
Score = 258 bits (661), Expect = 3e-81
Identities = 141/195 (72%), Positives = 170/195 (87%)
Query: 10 HIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIV 69
H+ LKKYTIDLTE+A GKLDPVIGRD+EIRR IQVLQRR+KNNPVLIGEPGVGKTAIV
Sbjct: 1 HMQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60
Query: 70 EGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 129
EGLAQRIINGEVP L +++L LD+ L+AG KYRGEFE+RLK +L +++ + ++I+F
Sbjct: 61 EGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 120
Query: 130 IDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKI 189
IDELHTM+G GK +G++DAGNMLKP L+RGELHC+GATTL+EYRQYIEKDAA ERRFQK+
Sbjct: 121 IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKV 180
Query: 190 LVEEPDIEETISILR 204
V EP +E+TI+ILR
Sbjct: 181 FVAEPSVEDTIAILR 195
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 225 bits (574), Expect = 3e-67
Identities = 115/271 (42%), Positives = 177/271 (65%), Gaps = 4/271 (1%)
Query: 406 PVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGP 465
P + Q +R+ L N+ + L V GQD+AI A++ AI+ +R+GL +P GSF+F GP
Sbjct: 1 PEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGP 60
Query: 466 TGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV 525
TGVGKTE+ LS + ++R DMSE++E+H++SRLIGAPPGY+G+++GG LT+ V
Sbjct: 61 TGVGKTEVTVQLSKALGIE---LLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAV 117
Query: 526 RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 585
+ P++++LLDEIEKA+ DVFNILLQ++D+G LTDN GR +FRN ++VMT+N G + +
Sbjct: 118 IKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETE 177
Query: 586 EM-EKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKL 644
+ M E+K F PEF NR+D+II F +L+ I + + + L+ +L
Sbjct: 178 RKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQL 237
Query: 645 LKMNMDLKISKAALKKISNIGFDLIYGARDV 675
+ + L++S+ A ++ G+D GAR +
Sbjct: 238 DQKGVSLEVSQEARNWLAEKGYDRAMGARPM 268
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 149 bits (378), Expect = 2e-40
Identities = 31/245 (12%), Positives = 74/245 (30%), Gaps = 24/245 (9%)
Query: 14 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ-RRSKNNPVLIGEPGVGKTAIVEGL 72
++ + + R +D + R + ++ G+ GKT +V L
Sbjct: 84 VQVENGFMKQGHRGWLVDLTGELVGCSPVVAEFGGHRYASGMVIVTGKGNSGKTPLVHAL 143
Query: 73 AQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDE 132
+ + + ++ + L + Y +F + I + + + +I ID
Sbjct: 144 GEALGGKDKYATVRFGEPL----------SGYNTDFNVFVDDIARAM---LQHRVIVIDS 190
Query: 133 LHTMIGTGKVEGSIDAG----NMLKPELSRGELH----CIGATTLNEYRQYIEK-DAAFE 183
L +IG + L ++ I + I +
Sbjct: 191 LKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPTSNDDKIVELVKEAS 250
Query: 184 RRFQKILVEEPDIEETISILRGLQKKYEV-HHGVEITDPAIVAASELSYRYISDRFMPDK 242
R LV D++ +L + + H ++ + + + + + K
Sbjct: 251 RSNSTSLVISTDVDGEWQVLTRTGEGLQRLTHTLQTSYGEHSVLTIHTSKQSGGKQASGK 310
Query: 243 AIDLI 247
AI +
Sbjct: 311 AIQTV 315
Score = 38.9 bits (90), Expect = 0.002
Identities = 8/48 (16%), Positives = 15/48 (31%), Gaps = 1/48 (2%)
Query: 452 DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 499
+ G + G GKT L L + ++ + E +
Sbjct: 118 GHRYASGMVIVTGKGNSGKTPLVHALGEAL-GGKDKYATVRFGEPLSG 164
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 137 bits (345), Expect = 9e-36
Identities = 51/315 (16%), Positives = 109/315 (34%), Gaps = 59/315 (18%)
Query: 421 IENLLCKRVVGQDEAISAVSNAIRR---------------------SRSGLSDAKRPYGS 459
++ +L V+GQ++A S A+ L + + +
Sbjct: 11 LKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSN 70
Query: 460 FMFLGPTGVGKTELCKTLS-----ACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIG 514
+ +GPTG GKT + +TL+ ++ S+ ++ ++RL+ A +
Sbjct: 71 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQ 130
Query: 515 YEEGG--YLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGR--LTDNRGRTINFRN 570
+ G ++ EI + S + + V LL+I++ + GR N
Sbjct: 131 KAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGN 190
Query: 571 TIIVMTSNLGSDKIKEMEKGDK-------------------------EIIKLAVMNEVKI 605
I + TS++ + + + + + V
Sbjct: 191 FIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTY 250
Query: 606 YFRPEFINRIDDIIVFRYLNRKNILSIANIQLNIL----KNKLLKMNMDLKISKAALKKI 661
PE I R+ + ++ + ++ I N L + +DL + A+K+I
Sbjct: 251 GLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEI 310
Query: 662 SNIGFDLIYGARDVH 676
+ + + GAR +
Sbjct: 311 AQLALERKTGARGLR 325
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 118 bits (297), Expect = 8e-30
Identities = 43/243 (17%), Positives = 89/243 (36%), Gaps = 28/243 (11%)
Query: 421 IENLLCKRVVGQDEAISAVSNAIRR--SRSGLSDAKR---PYGSFMFLGPTGVGKTELCK 475
I + L + ++GQ +A AV+ A+R R L + R + + +GPTGVGKTE+ +
Sbjct: 8 IVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIAR 67
Query: 476 TLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 535
I+++ ++F E + + + + + GG + + + ++ +
Sbjct: 68 ---RLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQN---GIVFI 121
Query: 536 DEIEKANSDVFNILLQILDDGRLTDNR----GRTINFRNTIIVMTSNLGSDKIKEMEKGD 591
DEI+K + +G D G T++ ++ ++ L
Sbjct: 122 DEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILF----------- 170
Query: 592 KEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDL 651
I A PE R+ + L+ + I L + +
Sbjct: 171 --IASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATE 228
Query: 652 KIS 654
++
Sbjct: 229 GVN 231
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 112 bits (280), Expect = 5e-28
Identities = 26/264 (9%), Positives = 63/264 (23%), Gaps = 28/264 (10%)
Query: 31 DPVIGRDDEIRRAIQVLQRRSKNNP---------VLIGEPGVGKTAIVEGLAQRIINGEV 81
+ R E ++ R + IG G+GKT + + +R+
Sbjct: 16 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA 75
Query: 82 PNSLLSKKI-------------LLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 128
L K+ L L + + RG + K L + + ++
Sbjct: 76 KEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLL 135
Query: 129 FIDELHTMIGTGKVEGS------IDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAF 182
I + + + + + + + + + Y+ +
Sbjct: 136 VILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQ 195
Query: 183 ERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 242
+ P + Q+ + S++ +
Sbjct: 196 VESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDKGGDGSARR 255
Query: 243 AIDLIDEAAAKIKIEIDSKPEIMD 266
AI + A +
Sbjct: 256 AIVALKMACEMAEAMGRDSLSEDL 279
Score = 42.8 bits (99), Expect = 9e-05
Identities = 26/236 (11%), Positives = 54/236 (22%), Gaps = 11/236 (4%)
Query: 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 486
+ + A++ + + +G G+GKT L K +
Sbjct: 16 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA 75
Query: 487 SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVF 546
++ + L + L+D + N +
Sbjct: 76 KEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLL 135
Query: 547 NILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIY 606
IL + + + + G I L V ++V
Sbjct: 136 VILDEFQSMLSSPRIAAEDLYTLLRV---------HEEIPSRDGVNRIGFLLVASDV--R 184
Query: 607 FRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 662
+I + + IL+ + D L+ IS
Sbjct: 185 ALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELIS 240
>d1g5ba_ d.159.1.3 (A:) lambda ser/thr protein phosphatase
{Bacteriophage lambda [TaxId: 10710]}
Length = 219
Score = 105 bits (263), Expect = 3e-26
Identities = 42/270 (15%), Positives = 84/270 (31%), Gaps = 57/270 (21%)
Query: 659 KKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMV 718
+KI + I+ D+HGC +L L I + + I +GDL+++G ++++ L ++
Sbjct: 5 EKIDGSKYRNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELI 64
Query: 719 YSMRNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK 778
+ + V GNHE ++D L ++ + WL
Sbjct: 65 TFP--WFRAVRGNHEQMMIDGL------------------SERGNVNHWLL--------- 95
Query: 779 KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNT 838
L + E + + K L ++ H +
Sbjct: 96 ------------NGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVIC-HADY 142
Query: 839 IDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHW 898
+ + I + T +FGH
Sbjct: 143 PFDEYEFGKPVDHQQVIWNRERISN---------------SQNGIVKEIKGADTFIFGHT 187
Query: 899 STLGLIMKPNIICLDTGCVWGNKLTALCLE 928
+ + N + +DTG V+ LT + ++
Sbjct: 188 PAVKPLKFANQMYIDTGAVFCGNLTLIQVQ 217
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 81.0 bits (198), Expect = 2e-17
Identities = 35/262 (13%), Positives = 78/262 (29%), Gaps = 22/262 (8%)
Query: 31 DPVIGRDDEIRRAIQVLQRRSKN------NPVLIGEPGVGKTAIVEGLAQ--------RI 76
+ R+ ++++ +L +N L+G PG GKT + L + R
Sbjct: 16 KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARF 75
Query: 77 INGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTM 136
+ I+ L RG D +L E ++D+ +F+
Sbjct: 76 VYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEH-LRERDLYMFLVLDDAF 134
Query: 137 IGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDI 196
+ + +L + + + ++ I
Sbjct: 135 NLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTK 194
Query: 197 EETISILRGLQKKYEVHHGVEITDPAI-VAASELSYRYISDRFMPD--KAIDLIDEAAAK 253
++ IL + ++ + + A + D D AID++ +A
Sbjct: 195 DQIFDILL--DRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYA 252
Query: 254 IKIEIDSK--PEIMDKLERRLI 273
+ PE + K + ++
Sbjct: 253 AQQNGRKHIAPEDVRKSSKEVL 274
Score = 42.1 bits (97), Expect = 2e-04
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 4/79 (5%)
Query: 427 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 486
KR+ +++ + + + L + Y LG G GKT + L +
Sbjct: 16 KRLPHREQQLQQLDILLGNW---LRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTT 72
Query: 487 S-IIRIDMSEFIEKHSISR 504
+ + I+ + +I
Sbjct: 73 ARFVYINGFIYRNFTAIIG 91
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 70.0 bits (170), Expect = 1e-13
Identities = 32/271 (11%), Positives = 79/271 (29%), Gaps = 16/271 (5%)
Query: 431 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 490
+ + +++ + G + P F+ G G GKT L + N +I
Sbjct: 7 TDKQFENRLNDNLEELIQGKKAVESPTA-FLLGGQPGSGKTSLRSAIFEETQGN---VIV 62
Query: 491 IDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILL 550
ID F ++H + ++ + I+ ++ + V
Sbjct: 63 IDNDTFKQQHPNFDELVKLYE----KDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTG 118
Query: 551 QILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPE 610
+ D T + + + VM + + +E+ + +
Sbjct: 119 RTTDVPIQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADD---PMTARATPKQ 175
Query: 611 FINRIDDIIV--FRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDL 668
+ + + L++ + S + + K L+K N
Sbjct: 176 AHDIVVKNLPTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELNRKVSG 235
Query: 669 IYGARDVHGCKKSLSILLKKIHKKSPEANFI 699
+ ++ ++ H+++PE I
Sbjct: 236 KEIQPTL---ERIEQKMVLNKHQETPEFKAI 263
Score = 30.3 bits (67), Expect = 0.97
Identities = 32/290 (11%), Positives = 83/290 (28%), Gaps = 45/290 (15%)
Query: 38 DEIRRAIQVLQ--RRSKNNPVLI---GEPGVGKTAIVEGLAQ------RIINGEVPNSLL 86
+ + ++ L +++ +P G+PG GKT++ + + +I+ +
Sbjct: 13 NRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQH 72
Query: 87 SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSI 146
L+ + + I+ +S+ +++I T +
Sbjct: 73 PNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQ 132
Query: 147 DAG--NMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILR 204
G + +G E + D R + ++ + L
Sbjct: 133 AKGYETKMYVMAVPKINSYLGTIERYE---TMYADDPMTARATPKQAHDIVVKNLPTNLE 189
Query: 205 GLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEI 264
L K I L + K+ +++
Sbjct: 190 TLHKTGLFS-----------------------------DIRLYNREGVKLYSSLETPSIS 220
Query: 265 MDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKI 314
+ + + K+ + I+ + +K +L +E + + LE +
Sbjct: 221 PKETLEKELNRKVSGKEIQPTLERIEQKMVLNKHQETPEFKAIQQKLESL 270
>d1nnwa_ d.159.1.5 (A:) Hypothetical protein PF1291 {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 251
Score = 54.7 bits (130), Expect = 1e-08
Identities = 20/214 (9%), Positives = 63/214 (29%), Gaps = 23/214 (10%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEAN----FIFLGDLINKGPQSLDTLRMVYSMRNYAKI-- 727
++ G +L+ L +I + E + LG+++ P + + ++ + +
Sbjct: 8 NIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKENVKI 67
Query: 728 VLGNHEIHLLDVLININKKSKLDTFDDILDAP---------DKKKLVSWLRTQPLAIYY- 777
+ G ++ + + +D + + +LR P+ +
Sbjct: 68 IRGKYDQIIAMSDPHATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDK 127
Query: 778 ---KKYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINWDNHLHTI 834
+ ++ + + + + + K+ + D
Sbjct: 128 IGGNEVFGVYGSPINPFDGEVLAEQPTSYYEAIMRPV-KDYEMLIVASPMYPVDAMTRYG 186
Query: 835 HLNTIDKLQFIINTLTRTRFCKID---GTIEFIK 865
+ + F + F +D +FI+
Sbjct: 187 RVVCPGSVGFPPGKEHKATFALVDVDTLKPKFIE 220
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 53.8 bits (129), Expect = 2e-08
Identities = 43/245 (17%), Positives = 94/245 (38%), Gaps = 46/245 (18%)
Query: 430 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESII 489
V + + + I++ +S A+ P + G +GVGK + + + ++E +
Sbjct: 3 VFESPKMKEILEKIKK----ISCAECP---VLITGESGVGKEVVARLIHKLSDRSKEPFV 55
Query: 490 RIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSL-------ILLDEIEKAN 542
++++ + L G E G T V K + LDEI + +
Sbjct: 56 ALNVASIPRDIFEAELFG--------YEKGAFTGAVSSKEGFFELADGGTLFLDEIGELS 107
Query: 543 SDVFNILLQILDDG---RLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAV 599
+ LL++++ G RL + +N R I+ +N + + +++G
Sbjct: 108 LEAQAKLLRVIESGKFYRLGGRKEIEVNVR---ILAATN--RNIKELVKEGK-------- 154
Query: 600 MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLK-ISKAAL 658
FR + R+ I + R+ I + + LK K +++ +K+A
Sbjct: 155 -------FREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQ 207
Query: 659 KKISN 663
+ + +
Sbjct: 208 ELLLS 212
Score = 33.7 bits (77), Expect = 0.080
Identities = 21/107 (19%), Positives = 45/107 (42%), Gaps = 7/107 (6%)
Query: 34 IGRDDEIRRAIQVLQRRSKNN-PVLI-GEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 91
+ +++ ++ +++ S PVLI GE GVGK + + + + P L+ +
Sbjct: 3 VFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASI 62
Query: 92 L--LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTM 136
+ A L K K+ E+++ +F+DE+ +
Sbjct: 63 PRDIFEAELFGYEKGAFTGAVSSKEGFFELADGG---TLFLDEIGEL 106
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 53.3 bits (128), Expect = 3e-08
Identities = 40/219 (18%), Positives = 77/219 (35%), Gaps = 43/219 (19%)
Query: 29 KLDPVIGRDD---EIRRAIQVLQRRSK---------NNPVLIGEPGVGKTAIVEGLAQRI 76
V G ++ E++ ++ L+ S+ +L+G PGVGKT + +A
Sbjct: 7 TFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGE- 65
Query: 77 INGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTM 136
+ + + + G R++ + + + I+FIDE+ +
Sbjct: 66 ---------ARVPFITASGSDFV--EMFVGVGAARVRDLFETAKRHAP-CIVFIDEIDAV 113
Query: 137 IG--TGKVEGSIDAGNMLKPEL--------SRGELHCIGATTLNEYRQYIEKDAAFER-- 184
V G D +L + + AT + D A R
Sbjct: 114 GRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPD-----ILDPALLRPG 168
Query: 185 RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPA 222
RF + I ++ PD++ ILR + + V++ A
Sbjct: 169 RFDRQIAIDAPDVKGREQILRIHARGKPLAEDVDLALLA 207
Score = 43.7 bits (103), Expect = 5e-05
Identities = 43/233 (18%), Positives = 71/233 (30%), Gaps = 67/233 (28%)
Query: 429 VVGQDEAISAVSNAI----RRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN 484
V G +EA + + SR A+ P G + +GP GVGKT L + ++
Sbjct: 11 VAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKG-VLLVGPPGVGKTHLARAVAGEARVP 69
Query: 485 EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGG--YLTEIVRRKPYSLILLDEIEKAN 542
I S+F+E ++G L E +R ++ +DEI+
Sbjct: 70 ---FITASGSDFVEM------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 114
Query: 543 SD--------------VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 588
N LL +D +++ +N
Sbjct: 115 RKRGSGVGGGNDEREQTLNQLLVEMDGFEKDT---------AIVVMAATN---------- 155
Query: 589 KGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILK 641
+I+ A++ RP R D I + K I I
Sbjct: 156 --RPDILDPALL-------RP---GRFDRQIAIDAPDVKGREQILRIHARGKP 196
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 54.4 bits (130), Expect = 4e-08
Identities = 41/260 (15%), Positives = 81/260 (31%), Gaps = 23/260 (8%)
Query: 421 IENLLCKRVVGQDEAISAVSNAI----RRSRSGLSDAKRPYGS-FMFLGPTGVGKTELCK 475
I + L + ++GQ +A AV+ A+ RR + + +GPTGVGKTE+ +
Sbjct: 8 IVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIAR 67
Query: 476 TLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 535
L+ I+++ ++F E + + + + + + + K
Sbjct: 68 RLAKLA---NAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAK------- 117
Query: 536 DEIEKANSDVFNILLQIL-----DDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 590
+A +L L + +N + R G KE+E
Sbjct: 118 -NRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLRE-GQLDDKEIEID 175
Query: 591 DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNK-LLKMNM 649
+ + V K L L + K+
Sbjct: 176 VSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLIN 235
Query: 650 DLKISKAALKKISNIGFDLI 669
++ + A+ + G I
Sbjct: 236 PEELKQKAIDAVEQNGIVFI 255
Score = 32.8 bits (74), Expect = 0.20
Identities = 36/226 (15%), Positives = 67/226 (29%), Gaps = 17/226 (7%)
Query: 51 SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD----------IALLLA 100
+ N ++IG GVGKT I LA+ P + I L
Sbjct: 48 TPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEATKFTEVGYVGKEVDSIIRDLTD 104
Query: 101 GTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE 160
++ K + ++ I +D L E + + R +
Sbjct: 105 SAMKLVRQQEIAKNRARAEDVAEERI---LDALLPPAKNQWGEVENHDSHSSTRQAFRKK 161
Query: 161 LHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITD 220
L G E + + E + S+ + L ++I D
Sbjct: 162 LRE-GQLDDKEIEIDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKD 220
Query: 221 PAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMD 266
+ + + I+ + KAID +++ EID + +
Sbjct: 221 ALKALIDDEAAKLINPEELKQKAIDAVEQNGIVFIDEIDKICKKGE 266
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 50.9 bits (120), Expect = 2e-07
Identities = 23/126 (18%), Positives = 48/126 (38%), Gaps = 12/126 (9%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--- 485
V QD A++ + ++ + +F GP G GKT L+ ++ +
Sbjct: 14 VTAQDHAVTVLKKTLKSAN---------LPHMLFYGPPGTGKTSTILALTKELYGPDLMK 64
Query: 486 ESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDV 545
I+ ++ S+ + + + + E PY +I+LDE + +D
Sbjct: 65 SRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADA 124
Query: 546 FNILLQ 551
+ L +
Sbjct: 125 QSALRR 130
Score = 40.8 bits (94), Expect = 4e-04
Identities = 26/120 (21%), Positives = 44/120 (36%), Gaps = 5/120 (4%)
Query: 21 LTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGE 80
EK R LD V +D + + L+ + + + G PG GKT+ + L + + +
Sbjct: 2 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD 61
Query: 81 VPN----SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTM 136
+ L + + I R K L+ III +DE +M
Sbjct: 62 LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIII-LDEADSM 120
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 49.1 bits (117), Expect = 9e-07
Identities = 37/215 (17%), Positives = 76/215 (35%), Gaps = 43/215 (20%)
Query: 33 VIGRDD---EIRRAIQVLQRRSK---------NNPVLIGEPGVGKTAIVEGLAQRIINGE 80
V G D+ E+ ++ L+ S+ +++G PG GKT + + +A
Sbjct: 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGE----- 68
Query: 81 VPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIG-- 138
+ + + + G R++ + ++ IIFIDE+ +
Sbjct: 69 -----AKVPFFTISGSDFV--EMFVGVGASRVRDMFEQAKKAAP-CIIFIDEIDAVGRQR 120
Query: 139 TGKVEGSIDAGNMLKPEL--------SRGELHCIGATTLNEYRQYIEKDAAFER--RF-Q 187
+ G D ++ + I AT + D A R RF +
Sbjct: 121 GAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPD-----VLDPALLRPGRFDR 175
Query: 188 KILVEEPDIEETISILRGLQKKYEVHHGVEITDPA 222
+++V PD+ IL+ ++ + ++ A
Sbjct: 176 QVVVGLPDVRGREQILKVHMRRVPLAPDIDAAIIA 210
Score = 40.2 bits (94), Expect = 6e-04
Identities = 45/239 (18%), Positives = 80/239 (33%), Gaps = 66/239 (27%)
Query: 429 VVGQDEAISAVSNAI----RRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN 484
V G DEA V+ + SR K P G + +GP G GKT L K ++
Sbjct: 14 VAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKG-VLMVGPPGTGKTLLAKAIAG---EA 69
Query: 485 EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSD 544
+ I S+F+E +G + + E ++ +I +DEI+
Sbjct: 70 KVPFFTISGSDFVEMF-----VGVGASRV-----RDMFEQAKKAAPCIIFIDEIDAVGRQ 119
Query: 545 --------------VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 590
N +L +D N G I++ +N
Sbjct: 120 RGAGLGGGHDEREQTLNQMLVEMDG--FEGNEG-------IIVIAATN------------ 158
Query: 591 DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN---RKNILSIANIQLNILKNKLLK 646
+++ A++ RP R D +V + R+ IL + ++ + +
Sbjct: 159 RPDVLDPALL-------RP---GRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDIDAA 207
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 42.8 bits (100), Expect = 8e-05
Identities = 28/137 (20%), Positives = 58/137 (42%), Gaps = 17/137 (12%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIF-----N 483
VVGQ+ ++A++N + R + +++F G GVGKT + + L+ +
Sbjct: 14 VVGQEHVLTALANGL--------SLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGIT 65
Query: 484 NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKP----YSLILLDEIE 539
+ + E + + + E+ L + V+ P + + L+DE+
Sbjct: 66 ATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVH 125
Query: 540 KANSDVFNILLQILDDG 556
+ FN LL+ L++
Sbjct: 126 MLSRHSFNALLKTLEEP 142
Score = 38.2 bits (88), Expect = 0.002
Identities = 45/251 (17%), Positives = 88/251 (35%), Gaps = 31/251 (12%)
Query: 21 LTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLI-GEPGVGKTAIVEGLAQRI--- 76
L K R V+G++ + L ++ L G GVGKT+I LA+ +
Sbjct: 2 LARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCE 61
Query: 77 ------INGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 130
G N ++ +D+ + A ++ + E L ++ + + I
Sbjct: 62 TGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLI 121
Query: 131 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKIL 190
DE+H + S + N L L H + ++ R +
Sbjct: 122 DEVHML--------SRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV---TILSRCLQFH 170
Query: 191 VEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 250
++ D+E+ L + + + H + A+E S R A+ L D+A
Sbjct: 171 LKALDVEQIRHQLEHILNEEHIAHEPRALQ-LLARAAEGSLR---------DALSLTDQA 220
Query: 251 AAKIKIEIDSK 261
A ++ ++
Sbjct: 221 IASGDGQVSTQ 231
>d1uf3a_ d.159.1.6 (A:) Hypothetical protein TT1561 {Thermus
thermophilus [TaxId: 274]}
Length = 228
Score = 42.4 bits (98), Expect = 1e-04
Identities = 19/171 (11%), Positives = 49/171 (28%), Gaps = 9/171 (5%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTL---RMVYSMRNYAKIVLG 730
+ G ++L +K +A +G+L+ K +S D R++ V G
Sbjct: 13 NPMGDLEALEKFVKLAPDTGADA-IALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPG 71
Query: 731 NHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQ 790
+ + + + + + + + ++ R L + +
Sbjct: 72 PQDAPIWE-----YLREAANVELVHPEMRNVHETFTFWRGPYLVAGVGGEIADEGEPEEH 126
Query: 791 WTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDK 841
+ ++ K L F + N + + + K
Sbjct: 127 EALRYPAWVAEYRLKALWELKDYPKIFLFHTMPYHKGLNEQGSHEVAHLIK 177
>d1auia_ d.159.1.3 (A:) Protein phosphatase-2B (PP-2B, calcineurin A
subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 473
Score = 43.1 bits (101), Expect = 1e-04
Identities = 15/66 (22%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVL 729
D+HG L L + ++FLGD +++G S++ + +++++ ++
Sbjct: 77 DIHGQFFDLMKLFEV-GGSPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLR 135
Query: 730 GNHEIH 735
GNHE
Sbjct: 136 GNHECR 141
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 41.9 bits (97), Expect = 2e-04
Identities = 20/149 (13%), Positives = 48/149 (32%), Gaps = 24/149 (16%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 488
+GQ+ + + +++ K P + GP G+GKT L ++ + N
Sbjct: 11 YIGQERLKQKLRVYLEAAKAR----KEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 66
Query: 489 IRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNI 548
+ + + +I + ++ +DEI + +
Sbjct: 67 SGPAIEKPGDLAAILAN--------------------SLEEGDILFIDEIHRLSRQAEEH 106
Query: 549 LLQILDDGRLTDNRGRTINFRNTIIVMTS 577
L ++D + G+ R + +
Sbjct: 107 LYPAMEDFVMDIVIGQGPAARTIRLELPR 135
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 40.5 bits (93), Expect = 6e-04
Identities = 31/284 (10%), Positives = 81/284 (28%), Gaps = 21/284 (7%)
Query: 29 KLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 88
R+ EI + L+ +++G GK++I++ L
Sbjct: 10 NRKDFFDREKEIEK----LKGLRAPITLVLGLRRTGKSSIIKIGINE---------LNLP 56
Query: 89 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELH--TMIGTGKVEGSI 146
I L +F L+K + ++ ++ + + ++G
Sbjct: 57 YIYLDLRKFEERNYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWN 116
Query: 147 DAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL 206
+ L + + E L D + I +
Sbjct: 117 RKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVNLLPALAYAYDNLKRIKFIMSG 176
Query: 207 QKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMD 266
+ ++ + + DP F ++AI+ + + I+ + +
Sbjct: 177 SEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDYEVVYE 236
Query: 267 KLE------RRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKL 304
K+ + ++++ + +++ + LI KE
Sbjct: 237 KIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAKKLILKEFENF 280
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 39.2 bits (90), Expect = 0.002
Identities = 29/196 (14%), Positives = 65/196 (33%), Gaps = 32/196 (16%)
Query: 30 LDPVIGRDDEIRRAIQVLQ------RRSKNNPV----LIGEPGVGKTAIVEGLAQRIING 79
++ +I D + R + + + S P+ L G P GKTA+ +A+
Sbjct: 8 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP 67
Query: 80 EVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGT 139
+ K I + + + K + + + + + +D++ ++
Sbjct: 68 FIKICSPDKMI------------GFSETAKCQAMKKIFDDAYKSQLSCVVVDDIERLLDY 115
Query: 140 GKVEGSID------AGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEE 193
+ +LK +G I TT R+ + ++ F +
Sbjct: 116 VPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTT---SRKDVLQEMEMLNAFSTT-IHV 171
Query: 194 PDIEETISILRGLQKK 209
P+I +L L+
Sbjct: 172 PNIATGEQLLEALELL 187
Score = 38.8 bits (89), Expect = 0.002
Identities = 10/64 (15%), Positives = 24/64 (37%), Gaps = 1/64 (1%)
Query: 420 NIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKR-PYGSFMFLGPTGVGKTELCKTLS 478
+ + + ++ + ++ V + ++ R P S + GP GKT L ++
Sbjct: 2 DYASYIMNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIA 61
Query: 479 ACIF 482
Sbjct: 62 EESN 65
>d1s95a_ d.159.1.3 (A:) Serine/threonine protein phosphatase 5, PP5
{Human (Homo sapiens) [TaxId: 9606]}
Length = 324
Score = 36.5 bits (84), Expect = 0.011
Identities = 29/130 (22%), Positives = 50/130 (38%), Gaps = 17/130 (13%)
Query: 609 PEFINR-IDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFD 667
F+ + + L+RK I L +K L K++ ++ + +KI+ G
Sbjct: 13 ISFMKELMQWYKDQKKLHRKCAYQI----LVQVKEVLSKLSTLVETTLKETEKITVCG-- 66
Query: 668 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT-LRMVYSMRNYAK 726
D HG L + + S +IF GD +++G S++ L + Y
Sbjct: 67 ------DTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPD 120
Query: 727 IVL---GNHE 733
GNHE
Sbjct: 121 HFHLLRGNHE 130
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 36.6 bits (84), Expect = 0.012
Identities = 33/333 (9%), Positives = 79/333 (23%), Gaps = 43/333 (12%)
Query: 303 KLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKL 362
+E K ++ + + + I+K + K K
Sbjct: 12 AMETKCDDVLLLLGMYLEFQYSFEMCLKCIKKEQPSHYKYHEKHY------------ANA 59
Query: 363 ERILKEKSQ----KDIQLPNNANKFTLLKTKVGSEEIAE-IVSRTTGIPVSKIVQVERE- 416
K+Q + A K + + + + +
Sbjct: 60 AIFADSKNQKTICQQAVDTVLAKKRVDSLQLTREQMLTNRFNDLLDRMDIMFGSTGSADI 119
Query: 417 -KLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCK 475
+ + L + D + + + K+ ++F GP GKT L
Sbjct: 120 EEWMAGVAWLHCLLPKMDSVVYDFLKCMVYNIP-----KKR--YWLFKGPIDSGKTTLAA 172
Query: 476 TLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 535
L + +++ + I E+ R P +
Sbjct: 173 ALLELCGGK---ALNVNLPLDRLNFELGVAIDQFLVVF--EDVKGTGGESRDLPS-GQGI 226
Query: 536 DEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEII 595
+ ++ + + L+ L ++T N S + K+I
Sbjct: 227 NNLDNLRDYLDGSVKVNLEKKHLNKR-----TQIFPPGIVTMNEYSVPKTLQARFVKQID 281
Query: 596 ------KLAVMNEVKIYFRPEFINRIDDIIVFR 622
+ + I +++
Sbjct: 282 FRPKDYLKHCLERSEFLLEKRIIQSGIALLLML 314
Score = 32.0 bits (72), Expect = 0.30
Identities = 30/188 (15%), Positives = 65/188 (34%), Gaps = 12/188 (6%)
Query: 33 VIGRDDEIRRAIQVLQRRS--KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKI 90
+ D + ++ + K + G GKT + L + G+ N L
Sbjct: 133 LPKMDSVVYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALL-ELCGGKALNVNLPLDR 191
Query: 91 LLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGN 150
L ++ + + ++ FED + + I+ L + ++GS+
Sbjct: 192 LNFELGVAID--QFLVVFEDVKGTGGE---SRDLPSGQGINNLDNL--RDYLDGSVKVNL 244
Query: 151 MLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKY 210
K R ++ G T+NEY A F ++ + ++ + L +K
Sbjct: 245 EKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQI--DFRPKDYLKHCLERSEFLLEKR 302
Query: 211 EVHHGVEI 218
+ G+ +
Sbjct: 303 IIQSGIAL 310
>d1k6ka_ a.174.1.1 (A:) N-terminal, ClpS-binding domain of ClpA, an
Hsp100 chaperone {Escherichia coli [TaxId: 562]}
Length = 142
Score = 34.8 bits (79), Expect = 0.014
Identities = 4/61 (6%), Positives = 16/61 (26%)
Query: 13 YLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGL 72
+ ++A + + + L+ + V + +V +
Sbjct: 79 QPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFI 138
Query: 73 A 73
+
Sbjct: 139 S 139
>d1su1a_ d.159.1.7 (A:) Phosphodiesterase yfcE {Escherichia coli
[TaxId: 562]}
Length = 184
Score = 34.9 bits (79), Expect = 0.021
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 9/70 (12%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSL--------DTLRMVYSMRNYA 725
D+HG + +L+ + + + LGD++N GP++ + + + +
Sbjct: 9 DIHGSLPATERVLELFAQSGAQW-LVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKV 67
Query: 726 KIVLGNHEIH 735
V GN +
Sbjct: 68 IAVRGNCDSE 77
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 34.9 bits (79), Expect = 0.027
Identities = 23/130 (17%), Positives = 46/130 (35%), Gaps = 25/130 (19%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 488
+GQ+ +S A+ ++ + GP G+G KT A I +E
Sbjct: 11 FIGQENVKKKLSLALEAAK----MRGEVLDHVLLAGPPGLG-----KTTLAHIIASELQT 61
Query: 489 IRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNI 548
S G + ++G + + ++ +DEI + N V +
Sbjct: 62 NIHVTS----------------GPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEEL 105
Query: 549 LLQILDDGRL 558
L ++D ++
Sbjct: 106 LYSAIEDFQI 115
Score = 28.8 bits (63), Expect = 3.1
Identities = 45/252 (17%), Positives = 82/252 (32%), Gaps = 34/252 (13%)
Query: 29 KLDPVIGRDD---EIRRAIQVLQRRSKNNP--VLIGEPGVGKTAIVEGLAQRIINGEVPN 83
LD IG+++ ++ A++ + R + +L G PG+GKT + +A +
Sbjct: 7 SLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVT 66
Query: 84 SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE 143
S A+L + + F D + ++ K + I ++ MIG G
Sbjct: 67 SGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIE-DFQIDIMIGKGPSA 125
Query: 144 GSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISIL 203
SI + +GATT + + RF IL + + + +
Sbjct: 126 KSI--------RIDIQPFTLVGATTRSGLL-----SSPLRSRFGIILELDFYTVKELKEI 172
Query: 204 RGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI------KIE 257
+ I S + R AI L + +I
Sbjct: 173 IKRAASLMDVEIEDAAAEMIAKRSRGTPR---------IAIRLTKRVRDMLTVVKADRIN 223
Query: 258 IDSKPEIMDKLE 269
D + M+ L
Sbjct: 224 TDIVLKTMEVLN 235
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 34.9 bits (79), Expect = 0.037
Identities = 11/43 (25%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 33 VIGRDDEIRRAIQVLQRRSKNNPVLI-GEPGVGKTAIVEGLAQ 74
++G++ +++ A+ + VL+ G+ G GK+ V LA
Sbjct: 9 IVGQE-DMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAA 50
Score = 34.9 bits (79), Expect = 0.044
Identities = 12/52 (23%), Positives = 22/52 (42%), Gaps = 11/52 (21%)
Query: 429 VVGQDEAISAVS-NAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSA 479
+VGQ++ A+ A+ G+ + G G GK+ + L+A
Sbjct: 9 IVGQEDMKLALLLTAVDPGIGGV----------LVFGDRGTGKSTAVRALAA 50
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 34.8 bits (78), Expect = 0.038
Identities = 14/73 (19%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 488
+ +E + + + + R + GP G GK C L IF
Sbjct: 13 LSHNEELTNFLKSLSDQPRDL--------PHLLLYGPNGTGKKTRCMALLESIFGPGVYR 64
Query: 489 IRIDMSEFIEKHS 501
++ID+ +F+ +
Sbjct: 65 LKIDVRQFVTASN 77
Score = 32.1 bits (71), Expect = 0.23
Identities = 31/261 (11%), Positives = 80/261 (30%), Gaps = 27/261 (10%)
Query: 22 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLI--GEPGVGKTAIVEGLAQRIING 79
+K R L+ + + E+ ++ L + ++ P L+ G G GK L + I
Sbjct: 2 VDKYRPKSLNALSHNE-ELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGP 60
Query: 80 EVPNSLLSKKILL------LDIALLLAGTKYRGEFEDRLKKILKEISNNQKD-----III 128
V + + + L++ ++ + D I K+ +
Sbjct: 61 GVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVD 120
Query: 129 FIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQK 188
F D + K +A ++ K + + + + +
Sbjct: 121 FQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKS 180
Query: 189 ILVEEPDIEETISILRGLQKKYEVHHGVEITDP----AIVAASELSYRYISDRFMPDKAI 244
+ + S + + + +++ I AS + R ++
Sbjct: 181 QCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLR---------VSL 231
Query: 245 DLIDEAAAKIKIEIDSKPEIM 265
+++ A ++ + S I+
Sbjct: 232 LMLESMALNNELALKSSSPII 252
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 33.6 bits (75), Expect = 0.081
Identities = 12/84 (14%), Positives = 30/84 (35%), Gaps = 8/84 (9%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYG--------SFMFLGPTGVGKTELCKTLSAC 480
V G ++ + N + + ++ + G + M GP G+GKT ++
Sbjct: 16 VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 75
Query: 481 IFNNEESIIRIDMSEFIEKHSISR 504
+ + D+ ++ +
Sbjct: 76 LGYDILEQNASDVRSKTLLNAGVK 99
>d1wvfa1 d.58.32.1 (A:243-521) Flavoprotein subunit of p-cresol
methylhydroxylase {Pseudomonas putida [TaxId: 303]}
Length = 279
Score = 33.5 bits (76), Expect = 0.084
Identities = 21/121 (17%), Positives = 37/121 (30%), Gaps = 10/121 (8%)
Query: 186 FQKILV---EEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYR---YISDRFM 239
F+ V +E DI E + LR L+ + + V I A S R
Sbjct: 3 FKPFEVIFEDEADIVEIVDALRPLRMSNTIPNSVVIASTLWEAGSAHLTRAQYTTEPGHT 62
Query: 240 PDKAIDLI----DEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLL 295
PD I + A + + E +D + + + + + E +
Sbjct: 63 PDSVIKQMQKDTGMGAWNLYAALYGTQEQVDVNWKIVTDVFKKLGKGRIVTQEEAGDTQP 122
Query: 296 L 296
Sbjct: 123 F 123
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 31.2 bits (70), Expect = 0.37
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 452 DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 494
+ K P+ + +G GVGKT L+ +S++
Sbjct: 5 EGKAPF-VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGD 46
>d1oc7a_ c.6.1.1 (A:) Cellobiohydrolase II (Cel6) {Humicola
insolens, Cel6a [TaxId: 34413]}
Length = 364
Score = 31.1 bits (70), Expect = 0.56
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 157 SRGELHCIGATTLNEYRQYIEKDAAFERRFQK---ILVEEPD 195
S GE I +N Y+ YI + F ILV EPD
Sbjct: 100 SNGEWA-IANNGVNNYKAYINRIREILISFSDVRTILVIEPD 140
>d1ab4a_ e.11.1.1 (A:) DNA Gyrase A {Escherichia coli [TaxId: 562]}
Length = 493
Score = 31.1 bits (70), Expect = 0.72
Identities = 13/48 (27%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 297 IKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATR 344
+ E +L + A L +I L++ I+EE+E VR + R
Sbjct: 445 LLDEYKELLDQIAELLRILGSADRLME---VIREELELVREQFGDKRR 489
>d2bodx1 c.6.1.1 (X:2-286) Cellulase E2 {Thermomonospora fusca,
strain yx [TaxId: 2021]}
Length = 285
Score = 30.6 bits (69), Expect = 0.87
Identities = 10/31 (32%), Positives = 18/31 (58%)
Query: 165 GATTLNEYRQYIEKDAAFERRFQKILVEEPD 195
GA + + YR +I++ AA + ++ EPD
Sbjct: 86 GAPSHSAYRSWIDEFAAGLKNRPAYIIVEPD 116
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB
{Escherichia coli [TaxId: 562]}
Length = 433
Score = 30.7 bits (68), Expect = 0.89
Identities = 11/62 (17%), Positives = 22/62 (35%), Gaps = 6/62 (9%)
Query: 437 SAVSNAIRRSRSGLSDAKRPYGS------FMFLGPTGVGKTELCKTLSACIFNNEESIIR 490
+ R ++ A P + G TG GK+ L + L+ + ++
Sbjct: 24 GKLKRMTREKAKQVTVAGVPMPRDAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVI 83
Query: 491 ID 492
+D
Sbjct: 84 VD 85
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 30.4 bits (67), Expect = 0.90
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 19 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIIN 78
+ EK R L ++G + I R Q+ + + + ++ G PG+GKT V LA ++
Sbjct: 3 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLG 62
Score = 29.2 bits (64), Expect = 2.0
Identities = 10/56 (17%), Positives = 17/56 (30%), Gaps = 9/56 (16%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN 484
+VG E I + + + G G+GKT L+ +
Sbjct: 17 IVGNKETIDRLQQIAKDGN---------MPHMIISGMPGIGKTTSVHCLAHELLGR 63
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 29.9 bits (66), Expect = 0.90
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
V +GE VGKT+++ R + N+
Sbjct: 4 VFLGEQSVGKTSLI----TRFMYDSFDNT 28
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain
{Caenorhabditis elegans [TaxId: 6239]}
Length = 277
Score = 30.2 bits (67), Expect = 0.95
Identities = 13/64 (20%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 21 LTEKARLGKLDP---VIGRDDEIRRAIQVLQRRSKNNPVLI---GEPGVGKTAIVEGLAQ 74
L K LG + R+ + R I+ L + + G G GK+ +A
Sbjct: 7 LDRKLLLGNVPKQMTCYIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSV----IAS 62
Query: 75 RIIN 78
+ ++
Sbjct: 63 QALS 66
>d1jk7a_ d.159.1.3 (A:) Protein phosphatase-1 (PP-1) {Human (Homo
sapiens), beta isoform [TaxId: 9606]}
Length = 294
Score = 30.4 bits (68), Expect = 0.95
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 5/66 (7%)
Query: 674 DVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVL 729
D+HG L L + PE+N++FLGD +++G QSL+T+ ++ + + ++
Sbjct: 59 DIHGQYYDLLRLFEYGGFP-PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLR 117
Query: 730 GNHEIH 735
GNHE
Sbjct: 118 GNHECA 123
>d1mswd_ e.8.1.3 (D:) T7 RNA polymerase {Bacteriophage T7 [TaxId:
10760]}
Length = 882
Score = 30.5 bits (68), Expect = 1.1
Identities = 22/101 (21%), Positives = 36/101 (35%), Gaps = 14/101 (13%)
Query: 245 DLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKL 304
D D A I + ++L R QL +EHE+ E + R +K +
Sbjct: 9 DFSDIELAAIPFNTLADHYG-ERLARE--QLALEHESY-----EMGEARF---RKMFERQ 57
Query: 305 EIK--YANLEKIWKYEKTLIKD-SQQIKEEIEKVRLKINKA 342
A+ TL+ +I + E+V+ K K
Sbjct: 58 LKAGEVADNAAAKPLITTLLPKMIARINDWFEEVKAKRGKR 98
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 29.5 bits (65), Expect = 1.2
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
VL+GE VGKT++V R + +
Sbjct: 7 VLLGEGCVGKTSLV----LRYCENKFNDK 31
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 29.6 bits (65), Expect = 1.2
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
V++G GVGK+A+ + I +
Sbjct: 10 VVVGGGGVGKSALT----IQFIQSYFVSD 34
Score = 27.3 bits (59), Expect = 7.1
Identities = 15/71 (21%), Positives = 22/71 (30%)
Query: 460 FMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGG 519
+ +G GVGK+ L F ++ D I G EE G
Sbjct: 9 LVVVGGGGVGKSALTIQFIQSYFVSDYDPTIEDSYTKICSVDGIPARLDILDTAGQEEFG 68
Query: 520 YLTEIVRRKPY 530
+ E R +
Sbjct: 69 AMREQYMRAGH 79
>d1uoza_ c.6.1.1 (A:) Putative cellulase Rv0062 (Cel6, CelA1)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 301
Score = 29.8 bits (67), Expect = 1.3
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 165 GATTLNEYRQYIEKDAAFERRFQKILVEEPD 195
G T +YR +I+ A+ ++ EPD
Sbjct: 97 GFATGTDYRGWIDAVASGLGSSPATIIVEPD 127
>d1r7la_ d.277.1.1 (A:) Bacillus phage protein {Bacillus cereus
[TaxId: 1396]}
Length = 103
Score = 28.5 bits (63), Expect = 1.4
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 299 KEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGE 358
++INKL KI+ YE IKD IK+ ++ + + +S WQ V KL+Y +
Sbjct: 11 RDINKLIA-----SKIFGYE---IKDDNIIKDGRYRLGIPLYSQNIESAWQVVEKLEY-D 61
Query: 359 LNKLERILKEKSQKDIQLP 377
+ + LK K Q + +P
Sbjct: 62 VKVTKTDLKPKYQVHVFVP 80
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 29.2 bits (64), Expect = 1.5
Identities = 7/29 (24%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
V++G+ VGKT ++ P
Sbjct: 9 VVVGDGAVGKTCLL----ISYTTNAFPGE 33
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 29.3 bits (64), Expect = 1.5
Identities = 6/29 (20%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
++G VGK+++ + + G+ +S
Sbjct: 8 AILGYRSVGKSSLT----IQFVEGQFVDS 32
Score = 27.0 bits (58), Expect = 7.9
Identities = 8/56 (14%), Positives = 14/56 (25%)
Query: 461 MFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYE 516
LG VGK+ L F + + + + G +
Sbjct: 8 AILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQEYHLQLVDTAGQD 63
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 29.2 bits (64), Expect = 1.5
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
+ G GVGK+A+V R +
Sbjct: 6 AIFGRAGVGKSALV----VRFLTKRFIWE 30
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 29.2 bits (64), Expect = 1.6
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
++IG+ VGKT + R G P+
Sbjct: 6 IVIGDSNVGKTCLT----YRFCAGRFPDR 30
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.2 bits (64), Expect = 1.6
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
+ G GVGK+++V R + G S
Sbjct: 6 AVFGAGGVGKSSLV----LRFVKGTFRES 30
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 29.3 bits (64), Expect = 1.6
Identities = 8/29 (27%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
+++G+ GVGKT+++ + +N + N
Sbjct: 6 IILGDSGVGKTSLM----NQYVNKKFSNQ 30
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 29.0 bits (64), Expect = 1.7
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
VLIG GVGKT +V +R G P
Sbjct: 9 VLIGNAGVGKTCLV----RRFTQGLFPPG 33
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 28.9 bits (63), Expect = 1.7
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 4/25 (16%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGE 80
V++G VGK++++ QR G
Sbjct: 6 VVVGNGAVGKSSMI----QRYCKGI 26
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 29.2 bits (64), Expect = 1.7
Identities = 6/29 (20%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
V++G+ GKT ++ + P
Sbjct: 6 VIVGDGACGKTCLL----IVNSKDQFPEV 30
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 29.2 bits (64), Expect = 1.7
Identities = 8/28 (28%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPN 83
V++G+ VGKT ++ N P
Sbjct: 13 VVVGDGAVGKTCLL----MSYANDAFPE 36
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 28.9 bits (63), Expect = 1.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76
K N L+G G GK+ I LAQ++
Sbjct: 2 KRNIFLVGPMGAGKSTIGRQLAQQL 26
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 29.5 bits (66), Expect = 1.8
Identities = 22/142 (15%), Positives = 49/142 (34%), Gaps = 17/142 (11%)
Query: 416 EKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFM-FLGPTGVGKTELC 474
+ +L +++L G AI + + R G + +G G GKT
Sbjct: 4 DIVLEVQSL--HVYYGAIHAIKGIDLKVPR------------GQIVTLIGANGAGKTTTL 49
Query: 475 KTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLT--EIVRRKPYSL 532
++ + + II + + +G G LT E + Y+
Sbjct: 50 SAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNR 109
Query: 533 ILLDEIEKANSDVFNILLQILD 554
+ I++ +F++ ++ +
Sbjct: 110 KDKEGIKRDLEWIFSLFPRLKE 131
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 28.8 bits (63), Expect = 1.8
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
V++G GVGK+A+ ++I +
Sbjct: 7 VVVGAGGVGKSALT----IQLIQNHFVDE 31
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 29.1 bits (64), Expect = 1.8
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
+++G GVGK+A+ + + E
Sbjct: 8 IMVGSGGVGKSALT----LQFMYDEFVED 32
Score = 28.0 bits (61), Expect = 3.8
Identities = 11/68 (16%), Positives = 20/68 (29%)
Query: 460 FMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGG 519
+ +G GVGK+ L F + + D + G E+
Sbjct: 7 VIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEEVQIDILDTAGQEDYA 66
Query: 520 YLTEIVRR 527
+ + R
Sbjct: 67 AIRDNYFR 74
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 29.0 bits (63), Expect = 1.9
Identities = 9/14 (64%), Positives = 11/14 (78%)
Query: 56 VLIGEPGVGKTAIV 69
VLIGE GVGK+ +
Sbjct: 7 VLIGEQGVGKSTLA 20
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 28.9 bits (63), Expect = 1.9
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
V++G+ GKTA++ P +
Sbjct: 6 VVVGDSQCGKTALL----HVFAKDCFPEN 30
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.9 bits (63), Expect = 1.9
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
VL+G+ G GKT V +R + GE
Sbjct: 7 VLVGDGGTGKTTFV----KRHLTGEFEKK 31
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 28.9 bits (63), Expect = 1.9
Identities = 8/29 (27%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
+++G+ GVGKT+++ R +N +
Sbjct: 6 IILGDSGVGKTSLM----HRYVNDKYSQQ 30
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 29.3 bits (64), Expect = 2.1
Identities = 26/125 (20%), Positives = 41/125 (32%), Gaps = 17/125 (13%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 488
V GQ+E I+ V + + +F GP G GKT + E
Sbjct: 16 VYGQNEVITTVRKFVDEGK---------LPHLLFYGPPGTGKTS-----TIVALAREIYG 61
Query: 489 IRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNI 548
S R I + T + K + LI+LDE + + N
Sbjct: 62 KNYSNMVLELNASDDRGIDV---VRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNA 118
Query: 549 LLQIL 553
L +++
Sbjct: 119 LRRVI 123
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 28.9 bits (63), Expect = 2.1
Identities = 10/29 (34%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
VL+GE VGK++IV R ++ + +
Sbjct: 7 VLLGEAAVGKSSIV----LRFVSNDFAEN 31
Score = 28.1 bits (61), Expect = 3.1
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 1/85 (1%)
Query: 460 FMFLGPTGVGKTELCKTLSACIFN-NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG 518
+ LG VGK+ + + F N+E I + + G E
Sbjct: 6 LVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTINEHTVKFEIWDTAGQERF 65
Query: 519 GYLTEIVRRKPYSLILLDEIEKANS 543
L + R + +++ ++ K S
Sbjct: 66 ASLAPMYYRNAQAALVVYDVTKPQS 90
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.9 bits (63), Expect = 2.1
Identities = 5/27 (18%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVP 82
+ +G GKT ++ + N +
Sbjct: 4 LFLGLDNAGKTTLL----HMLKNDRLA 26
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 28.8 bits (63), Expect = 2.2
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
V++G+ VGKT ++ + P+
Sbjct: 7 VVVGDGAVGKTCLL----ISYTTNKFPSE 31
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 28.9 bits (63), Expect = 2.2
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGE 80
V++G+ GVGK+A+ Q+I +
Sbjct: 8 VVVGDGGVGKSALTIQFFQKIFVPD 32
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 28.8 bits (63), Expect = 2.2
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
L+G+ GVGK++I+ R + +
Sbjct: 8 CLLGDTGVGKSSIM----WRFVEDSFDPN 32
Score = 27.3 bits (59), Expect = 5.8
Identities = 16/80 (20%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 460 FMFLGPTGVGKTELCKTLSACIFN-NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG 518
LG TGVGK+ + F+ N I ++ G E
Sbjct: 7 VCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQNELHKFLIWDTAGLERF 66
Query: 519 GYLTEIVRRKPYSLILLDEI 538
L + R + I++ +I
Sbjct: 67 RALAPMYYRGSAAAIIVYDI 86
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga
maritima [TaxId: 2336]}
Length = 238
Score = 29.2 bits (65), Expect = 2.3
Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 6/105 (5%)
Query: 460 FMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGG 519
F +GP G GKT + +S I + + + E H + +LI P G
Sbjct: 31 FGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRKLISYLPEEAG----- 85
Query: 520 YLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGR 564
++ Y + ++S++ ++ + + L +
Sbjct: 86 -AYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKD 129
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 28.7 bits (63), Expect = 2.3
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVP 82
++IGE GVGK++++ R +
Sbjct: 11 LIIGESGVGKSSLL----LRFTDDTFD 33
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.4 bits (62), Expect = 2.3
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
V++G GVGK+A+ + + G
Sbjct: 7 VVLGSGGVGKSALT----VQFVQGIFVEK 31
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 28.7 bits (63), Expect = 2.4
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
++IG+ GVGK+ ++ + +
Sbjct: 8 IIIGDMGVGKSCLL----HQFTEKKFMAD 32
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 28.8 bits (63), Expect = 2.4
Identities = 7/29 (24%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
+L+G+ GVGK++++ R + +
Sbjct: 10 ILLGDGGVGKSSLM----NRYVTNKFDTQ 34
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.5 bits (62), Expect = 2.4
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 56 VLIGEPGVGKTAIV 69
+L+G PGVGK+A+
Sbjct: 5 LLLGAPGVGKSALA 18
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 28.7 bits (63), Expect = 2.4
Identities = 8/29 (27%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
V++G GVGK+A+ + + G
Sbjct: 7 VVLGSGGVGKSALT----VQFVTGTFIEK 31
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 28.5 bits (62), Expect = 2.5
Identities = 16/84 (19%), Positives = 24/84 (28%)
Query: 460 FMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGG 519
+ +G GVGK+ L F + D G EE G
Sbjct: 8 LVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDSYTKQCVIDDRAARLDILDTAGQEEFG 67
Query: 520 YLTEIVRRKPYSLILLDEIEKANS 543
+ E R +L+ + S
Sbjct: 68 AMREQYMRTGEGFLLVFSVTDRGS 91
Score = 28.5 bits (62), Expect = 3.0
Identities = 8/29 (27%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
V++G GVGK+A+ + I
Sbjct: 9 VVVGGGGVGKSALT----IQFIQSYFVTD 33
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 28.5 bits (62), Expect = 2.6
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
VL+GE VGK+++V R + G+
Sbjct: 10 VLLGESAVGKSSLV----LRFVKGQFHEF 34
>d7reqa1 c.1.19.1 (A:4-560) Methylmalonyl-CoA mutase alpha subunit,
domain 1 {Propionibacterium freudenreichii, subsp.
shermanii [TaxId: 1744]}
Length = 557
Score = 29.3 bits (65), Expect = 2.6
Identities = 16/110 (14%), Positives = 43/110 (39%), Gaps = 10/110 (9%)
Query: 238 FMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLI 297
++ + A E++ + +E+ + +++IE A + + S ++ L+
Sbjct: 404 AYVEELTWDLARKAWGHIQEVEKVGGMAKAIEKGIPKMRIEEAAARTQARIDSGRQPLI- 462
Query: 298 KKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSD 347
+N KY + + + +S + E+ +L +A R +
Sbjct: 463 --GVN----KYRLEHEP-PLDVLKVDNSTVLAEQKA--KLVKLRAERDPE 503
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 28.3 bits (62), Expect = 2.8
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
++IG VGKT+ + R + +
Sbjct: 9 LIIGNSSVGKTSFL----FRYADDSFTPA 33
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 28.3 bits (62), Expect = 2.8
Identities = 6/29 (20%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
++IG G GK+ ++ + I + +
Sbjct: 9 LVIGNAGTGKSCLL----HQFIEKKFKDD 33
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 28.4 bits (62), Expect = 2.8
Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 56 VLIGEPGVGKTAIVEGLAQR----------IINGEVPNSLLSKKILLLDIALL--LAGTK 103
++ G PGVGK+ ++ + + I G+ + K D + L+ K
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVEK 64
Query: 104 YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG 144
+ D K I +E + + +G + G
Sbjct: 65 QKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPG 105
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 29.0 bits (64), Expect = 2.9
Identities = 18/151 (11%), Positives = 38/151 (25%), Gaps = 15/151 (9%)
Query: 188 KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLI 247
++ V I L L G +E +
Sbjct: 619 ELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSH 678
Query: 248 DEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIK 307
++ I + L R+ L E Y + + K+ + E +
Sbjct: 679 EDTENVINGPEELYGTYEYLLGMRIWSLTKE------RYQK--------LLKQKQEKETE 724
Query: 308 YANLEKIWKYEKTLIKDSQQIKEEIEKVRLK 338
NL K+ + D + + ++ +
Sbjct: 725 LENLLKL-SAKDIWNTDLKAFEVGYQEFLQR 754
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 28.1 bits (61), Expect = 3.1
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVP 82
+++G GKT I+ ++ GE+
Sbjct: 4 LMVGLDAAGKTTIL----YKLKLGEIV 26
>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon
Methanobacterium thermoautotrophicum [TaxId: 145262]}
Length = 133
Score = 28.0 bits (62), Expect = 3.2
Identities = 17/127 (13%), Positives = 41/127 (32%), Gaps = 10/127 (7%)
Query: 166 ATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITD----P 221
LN Y+ +E +++ + + ++E L +Q K V +
Sbjct: 7 VAQLNIYQSQVEL---IQQQMEAVRATISELEILEKTLSDIQGKDGSETLVPVGAGSFIK 63
Query: 222 AIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEA 281
A + + + K + +A IK + + + K+ L +
Sbjct: 64 AELKDTSEVIMSVGAGVAIKKNFE---DAMESIKSQKNELESTLQKMGENLRAITDIMMK 120
Query: 282 IKREYDE 288
+ + +E
Sbjct: 121 LSPQAEE 127
>d1zofa1 c.47.1.10 (A:1-170) Thioredoxin reductase TsaA
{Helicobacter pylori [TaxId: 210]}
Length = 170
Score = 28.3 bits (62), Expect = 3.2
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
Query: 6 LDEEHIGYLKKYTIDLTEKARLGKLDPV-IGRD-DEIRRAIQVLQRRSKNNPV 56
L EE I + ID K R ++ + +GR+ DE+ R + L ++ V
Sbjct: 116 LFEEAIALRGAFLIDKNMKVRHAVINDLPLGRNADEMLRMVDALLHFEEHGEV 168
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 28.4 bits (62), Expect = 3.2
Identities = 5/25 (20%), Positives = 13/25 (52%), Gaps = 4/25 (16%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGE 80
++G+ GK++++ R + G
Sbjct: 9 GVLGDARSGKSSLI----HRFLTGS 29
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 28.2 bits (62), Expect = 3.3
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
+LIG+ GVGKT ++ R ++
Sbjct: 10 LLIGDSGVGKTCVL----FRFSEDAFNST 34
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 28.2 bits (62), Expect = 3.4
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
+LIG+ GVGK+ ++ R + + S
Sbjct: 6 LLIGDSGVGKSCLL----VRFVEDKFNPS 30
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 28.0 bits (61), Expect = 3.5
Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 20/167 (11%)
Query: 56 VLIGEPGVGKTAIVEGLAQR------IINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE 109
+L G PG GK+ I E LA + + + + +
Sbjct: 8 LLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGYIKHGRIDPWLPQSHQ---QNRMIM 64
Query: 110 DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL--------SRGEL 161
+ + +I+ + +L+ RG
Sbjct: 65 QIAADVAGRYAKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGD 124
Query: 162 HCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETIS-ILRGLQ 207
+ + AFE + V D ++ + + LQ
Sbjct: 125 SLSDPLVVADLHSQFADLGAFEHHV--LPVSGKDTDQALQSAINALQ 169
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 27.9 bits (61), Expect = 3.6
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 4/27 (14%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVP 82
VLIG+ GVGK+ ++ R E
Sbjct: 8 VLIGDSGVGKSNLL----SRFTRNEFN 30
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 28.4 bits (62), Expect = 3.8
Identities = 48/329 (14%), Positives = 100/329 (30%), Gaps = 34/329 (10%)
Query: 51 SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFED 110
SK ++G G GK+ I + I +L G +
Sbjct: 25 SKGFTAIVGANGSGKSNIGDA-----------------------ILFVLGGLSAKAMRAS 61
Query: 111 RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN 170
R+ ++ S N+ ++ D + + G
Sbjct: 62 RISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDEDEVVIRRRVYPDGRSSYWLNGRRA 121
Query: 171 EYRQYIEK-DAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAA--S 227
+ ++ AA +V + DI + I + ++ V + ++ S
Sbjct: 122 TRSEILDILTAAMISPDGYNIVLQGDITKFIKMSPLERRLLIDDISVFMRTFEAISRNFS 181
Query: 228 ELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYD 287
E+ + + D + ++IE K + + A+ +
Sbjct: 182 EIFAKLSPGGSARLILENPEDPFSGGLEIEA-KPAGKDVKRIEAMSGGEKALTALAFVFA 240
Query: 288 ESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQI----KEEIEKVRLKINKAT 343
K + + AN++++ K K+SQ I ++ + KI +
Sbjct: 241 IQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVS 300
Query: 344 RKSDWQTVSKLKYGELNKLERILKEKSQK 372
+ VSK+ L K +IL+E +K
Sbjct: 301 MRDG---VSKVVSLSLEKAMKILEEIRKK 326
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 28.2 bits (62), Expect = 3.9
Identities = 8/18 (44%), Positives = 9/18 (50%), Gaps = 1/18 (5%)
Query: 454 KRPYGSFMFLGPTGVGKT 471
K PY M +G G GK
Sbjct: 10 KIPY-VIMLVGVQGTGKA 26
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 28.4 bits (62), Expect = 3.9
Identities = 17/58 (29%), Positives = 30/58 (51%)
Query: 21 LTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIIN 78
EK R +LD ++G++ ++R ++ S + + G PGVGKT LA+ +
Sbjct: 14 WVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG 71
Score = 27.6 bits (60), Expect = 5.7
Identities = 13/66 (19%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 429 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 488
+VGQ+ + + + ++ +F GP GVGKT L+ +F
Sbjct: 26 IVGQEHIVKRLKHYVKTGS---------MPHLLFAGPPGVGKTTAALALARELFGENWRH 76
Query: 489 IRIDMS 494
++++
Sbjct: 77 NFLELN 82
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 27.9 bits (61), Expect = 4.1
Identities = 7/29 (24%), Positives = 13/29 (44%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
+ +G+ GVGKT + R + +
Sbjct: 9 LALGDSGVGKTTFL----YRYTDNKFNPK 33
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 27.7 bits (60), Expect = 4.2
Identities = 8/27 (29%), Positives = 11/27 (40%), Gaps = 4/27 (14%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVP 82
L+G GKT V I +G+
Sbjct: 6 TLVGLQYSGKTTFV----NVIASGQFN 28
>d7reqb1 c.1.19.1 (B:16-475) Methylmalonyl-CoA mutase beta subunit,
domain 1 {Propionibacterium freudenreichii, subsp.
shermanii [TaxId: 1744]}
Length = 460
Score = 28.6 bits (63), Expect = 4.2
Identities = 14/113 (12%), Positives = 33/113 (29%), Gaps = 31/113 (27%)
Query: 184 RRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKA 243
R +L EE +I G SY ++
Sbjct: 365 RNTGIVLAEEVNIGRVNDPAGG------------------------SY------YVESLT 394
Query: 244 IDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLL 296
L D A + + E++ + + + ++ +R +++K+ +
Sbjct: 395 RSLADAAWKEFQ-EVEKLGGMSKAVMTEHVTKVLDACNAERAKRLANRKQPIT 446
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 27.7 bits (60), Expect = 4.8
Identities = 19/169 (11%), Positives = 37/169 (21%), Gaps = 17/169 (10%)
Query: 52 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR 111
K ++ G GVGK+ + LA + LD + + G
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQ-----------------LDNSAYIEGDIINHMVVGG 44
Query: 112 LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNE 171
+ + D + + E +
Sbjct: 45 YRPPWESDELLALTWKNITDLTVNFLLAQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIR 104
Query: 172 YRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITD 220
+ RR +E E + ++ + K T
Sbjct: 105 FIILWTNREELLRRDALRKKDEQMGERCLELVEEFESKGIDERYFYNTS 153
>d1k4ta1 a.2.8.1 (A:641-712) Eukaryotic DNA topoisomerase I,
dispensable insert domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 25.9 bits (57), Expect = 4.8
Identities = 15/64 (23%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Query: 248 DEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYD----ESSKKRLLLIKKEINK 303
+++ ++ +ID+K E + R L K + + +K ES KK + +++++ K
Sbjct: 1 EKSMMNLQTKIDAKKEQLADARRDLKSAKADAKVMKDAKTKKVVESKKKAVQRLEEQLMK 60
Query: 304 LEIK 307
LE++
Sbjct: 61 LEVQ 64
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 27.8 bits (60), Expect = 5.0
Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 4/27 (14%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVP 82
+++G G GKT I+ R+ GEV
Sbjct: 9 LILGLDGAGKTTIL----YRLQVGEVV 31
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 27.8 bits (61), Expect = 5.2
Identities = 5/12 (41%), Positives = 7/12 (58%)
Query: 460 FMFLGPTGVGKT 471
+ +G G GKT
Sbjct: 13 WFLVGLQGSGKT 24
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 28.3 bits (62), Expect = 5.2
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 3/46 (6%)
Query: 36 RDDEIRRAIQVLQRRSKNNPVLI---GEPGVGKTAIVEGLAQRIIN 78
R + + N + + G PG GK+ +E +I
Sbjct: 35 RHQALSTQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIR 80
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 27.5 bits (60), Expect = 5.2
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 4/25 (16%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGE 80
+L+G+ GVGKT ++ R +G
Sbjct: 10 MLVGDSGVGKTCLL----VRFKDGA 30
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 27.7 bits (60), Expect = 5.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 460 FMFLGPTGVGKTELCKTLSA 479
+ GP+ VGK+ + + L
Sbjct: 5 VVLSGPSAVGKSTVVRCLRE 24
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 27.5 bits (60), Expect = 5.4
Identities = 6/14 (42%), Positives = 12/14 (85%)
Query: 56 VLIGEPGVGKTAIV 69
++IG+ GVGK+ ++
Sbjct: 7 IIIGDTGVGKSCLL 20
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 28.1 bits (61), Expect = 5.5
Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 3/100 (3%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKI 115
L+ G GK+ + LA +I G LL L + L RL +
Sbjct: 33 ALVSPGGAGKSMLALQLAAQIAGG---PDLLEVGELPTGPVIYLPAEDPPTAIHHRLHAL 89
Query: 116 LKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE 155
+S ++ + + +IG+ + + + LK
Sbjct: 90 GAHLSAEERQAVADGLLIQPLIGSLPNIMAPEWFDGLKRA 129
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 27.8 bits (61), Expect = 5.6
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 1/19 (5%)
Query: 453 AKRPYGSFMFLGPTGVGKT 471
+ P+ M +G G GKT
Sbjct: 8 PEPPF-VIMVVGVNGTGKT 25
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 27.5 bits (60), Expect = 5.7
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 4/29 (13%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPNS 84
+LIG GVGK+ ++ R + N
Sbjct: 10 LLIGNSGVGKSCLL----LRFSDDTYTND 34
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 27.8 bits (61), Expect = 5.8
Identities = 20/145 (13%), Positives = 48/145 (33%), Gaps = 12/145 (8%)
Query: 460 FMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM----------SEFIEKHSISRLIGAP 509
+ +G GVGKT L N + ++ K +I P
Sbjct: 9 VLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGP 68
Query: 510 PGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFR 569
G + ++ + Y L+ +D + L++ L + + +
Sbjct: 69 EGTDPAALAYDAVQAMKARGYDLLFVD--TAGRLHTKHNLMEELKKVKRAIAKADPEEPK 126
Query: 570 NTIIVMTSNLGSDKIKEMEKGDKEI 594
+V+ + G + +++ +K + +
Sbjct: 127 EVWLVLDAVTGQNGLEQAKKFHEAV 151
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 27.3 bits (59), Expect = 6.1
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 56 VLIGEPGVGKTAIVEGLAQR 75
+L G GK+ IV L
Sbjct: 7 ILNGGSSAGKSGIVRCLQSV 26
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 27.3 bits (59), Expect = 6.2
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 54 NPVLIGEPGVGKTAIVEGLAQRI 76
VL+G PG GK+ I LA+ +
Sbjct: 3 KAVLVGLPGSGKSTIGRRLAKAL 25
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 27.2 bits (59), Expect = 6.5
Identities = 6/25 (24%), Positives = 11/25 (44%)
Query: 52 KNNPVLIGEPGVGKTAIVEGLAQRI 76
++G G G T + LA+ +
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARAL 26
>d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP)
carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus
thermophilus [TaxId: 274]}
Length = 318
Score = 27.6 bits (61), Expect = 7.0
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 24/108 (22%)
Query: 461 MFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGY 520
+F G +G GKT TLS + E +I D H S G +E G Y
Sbjct: 18 VFFGLSGTGKT----TLST---DPERPLIGDDE------HGWS-----EDGVFNFEGGCY 59
Query: 521 LTEIVRRKPYSLILLDEIEKANSDVFNILLQ------ILDDGRLTDNR 562
I + ++ + + + N+++ DD T+N
Sbjct: 60 AKVIRLSPEHEPLIYKASNQFEAILENVVVNPESRRVQWDDDSKTENT 107
>d2f9ya1 c.14.1.4 (A:4-319) Acetyl-coenzyme A carboxylase carboxyl
transferase subunit alpha, AccA {Escherichia coli
[TaxId: 562]}
Length = 316
Score = 27.8 bits (61), Expect = 7.1
Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 8/58 (13%)
Query: 299 KEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRK-----SDWQTV 351
+ I +LE K +L + ++ L + I EE+ ++R K + TRK WQ
Sbjct: 7 QPIAELEAKIDSLTAGSRQDEKLDIN---IDEEVHRLREKSVELTRKIFADLGAWQIA 61
>d2nn6h3 d.51.1.1 (H:168-293) Ribosomal RNA-processing protein 4,
RRP4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 26.7 bits (59), Expect = 7.2
Identities = 14/63 (22%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 193 EPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY-ISDRFMPDKAIDLIDEAA 251
E IS LR V + + D +I+ E S + I D P+ +++ E
Sbjct: 60 SLADREVISRLRNCIISL-VTQRMMLYDTSILYCYEASLPHQIKDILKPEIMEEIVMETR 118
Query: 252 AKI 254
++
Sbjct: 119 QRL 121
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 26.9 bits (58), Expect = 7.3
Identities = 6/28 (21%), Positives = 13/28 (46%), Gaps = 4/28 (14%)
Query: 56 VLIGEPGVGKTAIVEGLAQRIINGEVPN 83
+++G GKT I+ ++ +V
Sbjct: 6 LMLGLDNAGKTTIL----KKFNGEDVDT 29
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 27.1 bits (59), Expect = 7.4
Identities = 7/16 (43%), Positives = 9/16 (56%)
Query: 462 FLGPTGVGKTELCKTL 477
LG GVG+ + TL
Sbjct: 8 LLGAHGVGRRHIKNTL 23
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 27.1 bits (59), Expect = 7.9
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 460 FMFLGPTGVGKTELCKTLSA 479
++ P+G GK+ L + L
Sbjct: 5 YIVSAPSGAGKSSLIQALLK 24
>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
typhimurium [TaxId: 90371]}
Length = 417
Score = 27.6 bits (61), Expect = 8.3
Identities = 8/85 (9%), Positives = 25/85 (29%), Gaps = 8/85 (9%)
Query: 255 KIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKI 314
++ P + + Q+K A + + I + ++ A + +
Sbjct: 2 PFTHETLPA---DPKAAIRQMKQALRAQIGDVQAVFDRLSATIAARVAEINDLKAQGQPV 58
Query: 315 W---KYEKTLIKDSQQIKEEIEKVR 336
W + + + +V+
Sbjct: 59 WPIIPFSE--LAMGNISDATRAEVK 81
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 26.9 bits (58), Expect = 8.6
Identities = 22/163 (13%), Positives = 56/163 (34%), Gaps = 11/163 (6%)
Query: 56 VLIGEPGVGKTAIVEGLAQRI-INGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKK 114
VL+G G GK+A+ +A ++ + L ++ + + R + L
Sbjct: 10 VLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRRNIEKMASGEPLNDDDRKPWLQALND 69
Query: 115 ILKEISNNQKDII--------IFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGA 166
+ K + + D L ++++ L + H
Sbjct: 70 AAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHFFKT 129
Query: 167 TTLNEYRQYIEKDAAFERRFQKILVEEPDIEETIS-ILRGLQK 208
L + +++ A E + +++P +E ++ + ++K
Sbjct: 130 QMLVTQFETLQEPGADETDVLVVDIDQP-LEGVVASTIEVIKK 171
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.8 bits (58), Expect = 9.0
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 462 FLGPTGVGKTELCKTLSA 479
GP+G GK+ L K L
Sbjct: 5 LSGPSGAGKSTLLKKLFQ 22
>d1fioa_ a.47.2.1 (A:) Sso1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 196
Score = 27.0 bits (59), Expect = 9.1
Identities = 11/89 (12%), Positives = 32/89 (35%), Gaps = 11/89 (12%)
Query: 297 IKKEINKLEIKYANLEKIWKYEKTLI--KDSQQIKEEIEKVRLKINKATRKSDWQTVSKL 354
I ++++K + ++ + K T + + + ++ ++ + K
Sbjct: 14 INRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKL-------- 65
Query: 355 KYGELNKLERILKEKSQKDIQLPNNANKF 383
E+ +R + K Q N+ +F
Sbjct: 66 -KNEIKSAQRDGIHDTNKQAQAENSRQRF 93
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 27.2 bits (59), Expect = 10.0
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 50 RSKNNPVLIGEPGVGKTAIV 69
R K ++ PG GKT
Sbjct: 7 RKKRLTIMDLHPGAGKTKRY 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.138 0.390
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,572,885
Number of extensions: 186121
Number of successful extensions: 1263
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1207
Number of HSP's successfully gapped: 257
Length of query: 938
Length of database: 2,407,596
Length adjustment: 94
Effective length of query: 844
Effective length of database: 1,116,976
Effective search space: 942727744
Effective search space used: 942727744
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.5 bits)