BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14502
(352 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|398832168|ref|ZP_10590332.1| riboflavin biosynthesis protein RibD [Herbaspirillum sp. YR522]
gi|398223705|gb|EJN10040.1| riboflavin biosynthesis protein RibD [Herbaspirillum sp. YR522]
Length = 373
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 209/353 (59%), Positives = 275/353 (77%), Gaps = 1/353 (0%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL QA ++++PNPRVG VI +++R+I G+T+ PGGNHAEI AL +AA +G DV
Sbjct: 20 MALALIQAGFGMLSTNPNPRVGAVITRQQRVIGVGFTQPPGGNHAEIQALADAAMRGEDV 79
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPCS+FG TPPC +ALI++GI +V+ AI DPNPLV+G+G+A+L +AGI
Sbjct: 80 RGATIYVTLEPCSHFGRTPPCADALIRAGIGRVVAAITDPNPLVAGQGLAKLQAAGIETA 139
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++Q EA EINIGF RM+ G+PWVRMK A+SLD KT+L N SSQWITS+ +R+D HIW
Sbjct: 140 SGVLQDEAAEINIGFLKRMRTGLPWVRMKTAASLDGKTALNNGSSQWITSQAARDDGHIW 199
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAI+ GIGT+ KD+ +L VR+I T QP+RIV+DS L + P RV++GGG+ +FTA
Sbjct: 200 RARACAIMAGIGTIAKDDAQLTVRAIDTPRQPHRIVVDSKLAVSPQARVIEGGGTWVFTA 259
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
++ KR LED G EVIVL N GKVDL A++ ELG+R++NELH+EAG +LN +LI EG
Sbjct: 260 SEDRDKRAALEDKGAEVIVLANAEGKVDLPALLRELGQRQVNELHVEAGSKLNASLIREG 319
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
CVDELL Y++P L+GE NMF LPP L +I L FHE+++IGPD+RILARF
Sbjct: 320 CVDELLAYLAPCLLGEGRNMFDLPPLQDLQGRIGLHFHEVKQIGPDLRILARF 372
>gi|300312948|ref|YP_003777040.1| bifunctional diaminohydroxyphosphoribosyl aminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Herbaspirillum seropedicae SmR1]
gi|300075733|gb|ADJ65132.1| bifunctional enzyme: diaminohydroxyphosphoribosyl aminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase protein [Herbaspirillum seropedicae SmR1]
Length = 354
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 208/353 (58%), Positives = 277/353 (78%), Gaps = 1/353 (0%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL QA ++++PNPRVGCVIVK++RII G+T+ PGGNHAEI A+ +AAA+G+DV
Sbjct: 1 MALALIQAGFGMLDTTPNPRVGCVIVKDQRIIGAGFTQPPGGNHAEIQAMADAAARGHDV 60
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+FG TPPC +ALI++G+ +V+ AI DPNP+V+G+G+A+L +AGI V
Sbjct: 61 RGATVYVTLEPCSHFGRTPPCADALIRAGVARVVAAIADPNPMVAGQGLARLQAAGIEVS 120
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++EA +INIGF RM+ G PWVRMK A+SLD KT+L+N SQWIT + +R+D HIW
Sbjct: 121 CGLLEEEARDINIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWITGQAARDDGHIW 180
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAI+ GIGT+ KD+ +L VR+I+T QP RIVIDS L + P RV++GG + +FTA
Sbjct: 181 RARACAIMAGIGTIQKDDAQLTVRAIETPRQPRRIVIDSKLIVSPEARVIQGGNTWVFTA 240
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
TD KR LE G EVI+L N GKVDL ++ ELG+R+INELH+EAG +LN AL+ EG
Sbjct: 241 TDDRDKRAALEAEGAEVILLANEQGKVDLPGLMRELGQRQINELHVEAGARLNGALLREG 300
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
CVDELL+Y++P LIG+ NMF LPP L KI ++FHE++++G D+RILARF
Sbjct: 301 CVDELLVYLAPSLIGDGRNMFELPPLEDLSGKIGIRFHEVKQVGADLRILARF 353
>gi|152980375|ref|YP_001354124.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Janthinobacterium sp. Marseille]
gi|151280452|gb|ABR88862.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Janthinobacterium sp. Marseille]
Length = 363
Score = 451 bits (1159), Expect = e-124, Method: Compositional matrix adjust.
Identities = 213/351 (60%), Positives = 271/351 (77%), Gaps = 1/351 (0%)
Query: 3 LALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL+ AK ++PNPRVGCVIVKE ++I GYT+ G HAE+ AL +AA +G+DV
Sbjct: 12 LALELAAKGMFTTTPNPRVGCVIVKENKVIGSGYTQPVGHAHAEVQALNDAADRGFDVSG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
STVY+TLEPCS+ G TPPC +ALIK+ + +V+ AI DPNPLV+G+G+A+L +AGI V G
Sbjct: 72 STVYVTLEPCSHHGRTPPCADALIKARVARVVAAIADPNPLVAGQGLARLEAAGIQVSCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
+++ EA E+NIGF SRMQ G PWVRMK A+SLD T+L+N SQWIT E+R D H WRA
Sbjct: 132 VLEAEAREMNIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITGDEARADGHYWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATD 241
R+CAILTGIGTV++D+P+L VR+I T QP RIVIDS+L+I P RVL GGG+ I A
Sbjct: 192 RACAILTGIGTVMEDDPQLTVRAIDTPRQPQRIVIDSHLQISPHARVLSGGGTLIVAAQA 251
Query: 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCV 301
P K K L DLGHE+IVLPN GKVDL A++ ELG+R+INELH+EAG++LN +LI EGCV
Sbjct: 252 NPEKEKPLRDLGHEIIVLPNAGGKVDLAALMQELGRRQINELHVEAGFKLNGSLIREGCV 311
Query: 302 DELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
DELL+Y++P L+G+A MF LPP SL+ K L FHE+++IG D+RILARF
Sbjct: 312 DELLVYLAPTLLGDAQRMFNLPPLESLEHKKNLTFHEVKQIGADLRILARF 362
>gi|409407402|ref|ZP_11255853.1| bifuntional protein [Herbaspirillum sp. GW103]
gi|386433153|gb|EIJ45979.1| bifuntional protein [Herbaspirillum sp. GW103]
Length = 373
Score = 442 bits (1137), Expect = e-121, Method: Compositional matrix adjust.
Identities = 213/353 (60%), Positives = 275/353 (77%), Gaps = 1/353 (0%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL QA ++++PNPRVGCVIVKE+RII G+T+ PGG+HAEI A+ +AAA+G DV
Sbjct: 20 MALALLQAGFGMLDTTPNPRVGCVIVKERRIIGAGFTQPPGGHHAEIQAMADAAARGADV 79
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+FG TPPC +ALI++G+ +V+ AI DPNPLV+G+G+A+L +AGI V
Sbjct: 80 RGATVYVTLEPCSHFGRTPPCADALIRAGVARVVAAIADPNPLVAGQGLARLQAAGIEVA 139
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++EA EINIGF RM+ G PWVRMK A+SLD KT+L+N SQWITS+ +R+D HIW
Sbjct: 140 CGLLEEEAREINIGFLHRMRTGRPWVRMKSAASLDGKTALHNGVSQWITSQAARDDGHIW 199
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAIL GIGT+ KD+ +L VR+I T QP RIV+DS L + P RV++GG + IFTA
Sbjct: 200 RARACAILAGIGTIQKDDAQLTVRAIDTPRQPRRIVVDSKLIVSPEARVIQGGNTWIFTA 259
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
TD KR LE G EVI+L N GKVDL ++ ELG+R+INELH+EAG +LN ALI G
Sbjct: 260 TDDREKRAALEAEGAEVILLANAEGKVDLPGLVRELGQRQINELHVEAGAKLNGALIRAG 319
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
CVDELL+Y++P LIG+ NMF LPP L KI + FHE++++GPD+RILARF
Sbjct: 320 CVDELLVYLAPALIGDGRNMFELPPLEDLSGKIGIHFHEVKQVGPDLRILARF 372
>gi|340788578|ref|YP_004754043.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Collimonas
fungivorans Ter331]
gi|340553845|gb|AEK63220.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Collimonas
fungivorans Ter331]
Length = 382
Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust.
Identities = 203/354 (57%), Positives = 279/354 (78%), Gaps = 2/354 (0%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ ALQ A+ + +S+PNP VGCVIVK+ ++I G+T+ PGGNHAEI AL +AAA+G+DV
Sbjct: 28 MSQALQLAENGLLSSAPNPAVGCVIVKDGQVIGSGFTQPPGGNHAEIQALQDAAAKGHDV 87
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+FG TPPC +AL+ +G+ KV+ AI DPNPLV+G+G+A+L +AGI+V+
Sbjct: 88 RGATVYVTLEPCSHFGRTPPCADALVLAGVAKVVAAIGDPNPLVAGQGMARLQAAGIAVE 147
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ +A E+NIGFF+RMQ G PWVR+K+A+SLD KT+L+N SQWITS+ +R+D H+W
Sbjct: 148 SGVLAAQARELNIGFFTRMQTGKPWVRLKVAASLDGKTALHNGQSQWITSQAARDDGHMW 207
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSI-KTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFT 238
RAR+ AILTGIGTV +DNP+L VR++ QP R+++DS L I P ++L GGG+ IF+
Sbjct: 208 RARAGAILTGIGTVKEDNPQLTVRTVPPILRQPLRVIVDSKLSISPDAKILAGGGNLIFS 267
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
AT K+ +LE G EV+VL N GKVDL VI+ELGKR++NELH+EAG +LN +LI E
Sbjct: 268 ATADANKQALLEQQGAEVVVLSNADGKVDLPQVILELGKRQVNELHVEAGSKLNASLIRE 327
Query: 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
CVDELL+Y++P ++G+ MF+LP +LD K+ LKFHEI+++G D+RILARF
Sbjct: 328 HCVDELLVYLAPSILGDGRGMFSLPALENLDHKLSLKFHEIKQVGEDLRILARF 381
>gi|445495767|ref|ZP_21462811.1| bifunctional riboflavin biosynthesis protein RibD
[Janthinobacterium sp. HH01]
gi|444791928|gb|ELX13475.1| bifunctional riboflavin biosynthesis protein RibD
[Janthinobacterium sp. HH01]
Length = 356
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 197/353 (55%), Positives = 269/353 (76%), Gaps = 1/353 (0%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL+ A + +SPNP +GCVIV++ ++I G T+ G +HAEI AL +A A+G+DV
Sbjct: 1 MALALEWAAKGLYTTSPNPHIGCVIVRDGQVIGAGVTQQAGSDHAEIQALKDAQARGHDV 60
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G TPPC++AL+++G+ +V+ A+ DPNPLV+G+G+A+L +AGI++
Sbjct: 61 RGATAYVTLEPCNHHGRTPPCSDALVRAGLGRVVAAMEDPNPLVAGQGMAKLAAAGIAIS 120
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ ++AYE+NIGFFSRM RG+PWVRMK A+SLD T+L+N SQWIT ++R D H W
Sbjct: 121 TGLLAEQAYELNIGFFSRMTRGLPWVRMKSAASLDGMTALHNGVSQWITGPQARADGHAW 180
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAILTGIGTV D+P+LNVR+++T QP RIV+DS L IDP +VL+GGG+ I A
Sbjct: 181 RARACAILTGIGTVKADDPQLNVRAVETPRQPRRIVVDSKLDIDPAAKVLQGGGTWIAAA 240
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P K L +G E+I+LPN GKVDL ++ ELG+R+INELH+EAG +LN +LI EG
Sbjct: 241 VSDPAKEAALRAVGAEIILLPNASGKVDLPELMRELGRRQINELHVEAGGKLNGSLIREG 300
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
CVDELL+Y++P L+G+A MF LP L K LKFHE+++IG D+RILARF
Sbjct: 301 CVDELLVYLAPTLLGDAQGMFALPALTDLTHKQLLKFHEVKQIGEDLRILARF 353
>gi|395761486|ref|ZP_10442155.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Janthinobacterium lividum PAMC 25724]
Length = 363
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 196/353 (55%), Positives = 270/353 (76%), Gaps = 1/353 (0%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL+ A + +SPNPR+GCVIVK+ ++I G T++ G +HAE+ AL NAAA+G DV
Sbjct: 10 MRLALEWAARGLYTTSPNPRIGCVIVKDGQVIGAGVTQAAGHDHAEVQALANAAARGNDV 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G TPPC++AL+++G+ +V+ A+ DPNPLV+G+G+A+L +AGI+V
Sbjct: 70 RGATAYVTLEPCNHHGRTPPCSDALVRAGLGRVVAAMTDPNPLVAGQGLAKLEAAGIAVT 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ ++A+E+NIGFFSRMQRG PWVRMK A+SLD T+L+N SQWIT +R D H W
Sbjct: 130 TGVLAEQAHEMNIGFFSRMQRGKPWVRMKTAASLDGMTALHNGQSQWITGAAARADGHAW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAILTGIGT+ D+P+LNVR+++T QP RIV+DS L I R+L GGG+ I A
Sbjct: 190 RARACAILTGIGTLKADDPQLNVRAVETPRQPRRIVVDSRLDISLDARILAGGGTWIVAA 249
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P K+ L LG EVI+LPN GKVDL A++ ELG+R+INE+H+EAG +LN +LI EG
Sbjct: 250 VAHPEKQAQLRALGAEVILLPNAAGKVDLAALMQELGRRQINEVHVEAGARLNGSLIREG 309
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
CVDELL+Y++P L+G+A MF LP L ++ L+FH++Q++G D+RILARF
Sbjct: 310 CVDELLVYLAPTLLGDAQGMFALPALTDLKQQRTLQFHQVQQVGEDLRILARF 362
>gi|399018280|ref|ZP_10720461.1| riboflavin biosynthesis protein RibD [Herbaspirillum sp. CF444]
gi|398101680|gb|EJL91887.1| riboflavin biosynthesis protein RibD [Herbaspirillum sp. CF444]
Length = 372
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 206/353 (58%), Positives = 271/353 (76%), Gaps = 1/353 (0%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
MTLAL QA+L + ++PNPRVGCVIVK++R+I G+T+ PG NHAEI A+ +A +G DV
Sbjct: 19 MTLALAQAELGMFTTTPNPRVGCVIVKDRRVIGAGFTQPPGDNHAEIQAMKDARERGNDV 78
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC +AL+ +G+ KV+ A+ DPNPLV+GKG+ +L +AGI+V
Sbjct: 79 RGATAYVTLEPCSHYGRTPPCADALVNAGLGKVVSAMTDPNPLVAGKGLEKLQAAGIAVV 138
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLMQ A+E+NIGFF RMQ+G PW+RMK A+SLD KT+L+N SQWIT + +R+D H W
Sbjct: 139 SGLMQDAAHEMNIGFFKRMQQGTPWIRMKSAASLDGKTALHNGKSQWITGQAARDDGHFW 198
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAI+TGIGTV DNP+L+VR++ T QP RIVIDS L + P +L GGG+ +FTA
Sbjct: 199 RARACAIVTGIGTVKDDNPQLSVRAVDTPRQPRRIVIDSKLALSPSAHILAGGGTWVFTA 258
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
++ K LED G E+IVLPN KVDL VI ELG+R++NE+HIEAG +LN +LI EG
Sbjct: 259 SEDREKIAALEDQGAEIIVLPNADHKVDLPRVIAELGQRQLNEVHIEAGSKLNASLIREG 318
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
CVDELLLY++P L+G+ +MF LP L KI L FHE+++IG D+RILARF
Sbjct: 319 CVDELLLYLAPSLLGDGRSMFDLPALDDLSGKIPLHFHEVKQIGEDLRILARF 371
>gi|134095549|ref|YP_001100624.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal)/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Herminiimonas arsenicoxydans]
gi|133739452|emb|CAL62503.1| bifunctional riboflavin biosynthesis protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)] [Herminiimonas arsenicoxydans]
Length = 363
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 208/351 (59%), Positives = 270/351 (76%), Gaps = 1/351 (0%)
Query: 3 LALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL+ A+ ++PNPRVGCVIVKE ++I GYT+ G HAE+ AL +AA +GYDV
Sbjct: 12 LALELAARGMFTTAPNPRVGCVIVKENQVIGSGYTQPAGHAHAEVQALNDAANKGYDVAG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
STVY+TLEPCS+ G TPPC +ALI++ + +V+ AI DPNPLV+G+G+A+L +AGI V G
Sbjct: 72 STVYVTLEPCSHHGRTPPCADALIRARVARVVAAIADPNPLVAGQGLARLEAAGIEVACG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
+++ EA EINIGF SRMQ G PWVRMK A+SLD T+L+N SQWIT E+R D H+WRA
Sbjct: 132 VLEAEAREINIGFLSRMQHGKPWVRMKSAASLDGMTALHNGISQWITGDEARADGHVWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATD 241
R+CAILTGIGTV +D+P+L VR+I QP RIVIDS L+I P RVL GGG+ I A
Sbjct: 192 RACAILTGIGTVREDDPQLTVRAIDIPRQPQRIVIDSQLQISPHARVLSGGGTWIVAAQA 251
Query: 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCV 301
P + KIL DLG+E+IVLPN GKVDL A+++ELG+R+INELH+EAG++LN +LI E CV
Sbjct: 252 HPAREKILRDLGNEIIVLPNADGKVDLPALMLELGRRQINELHVEAGFKLNGSLIREDCV 311
Query: 302 DELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
DELL+Y++P L+G+A MF LP SL++K + FHE+++IG D+RILARF
Sbjct: 312 DELLVYLAPTLLGDAQRMFNLPVLESLEQKKNMTFHEVKQIGADLRILARF 362
>gi|329903444|ref|ZP_08273466.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase
[Oxalobacteraceae bacterium IMCC9480]
gi|327548371|gb|EGF33053.1| Diamino hydroxy phospho ribosyl amin opyrimidine deaminase
[Oxalobacteraceae bacterium IMCC9480]
Length = 363
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 192/353 (54%), Positives = 261/353 (73%), Gaps = 1/353 (0%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL+ AK ++PNPRVGCV+V++ ++ G+T++ G HAEI AL +A A+G V
Sbjct: 10 MALALEWAAKGMFITAPNPRVGCVVVRDGVVLGAGHTQAAGQAHAEIQALADAQARGNSV 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPCS+ G TPPC +A+I++G+ +V+ AI DPNPLV+G G+ +L +AGI+V
Sbjct: 70 TGATLYVTLEPCSHHGRTPPCADAIIRAGVVRVVSAIADPNPLVAGAGLERLRAAGIAVT 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+++ A E+NIGFFSRMQ G PWVRMK A+SLD KT+L+N +SQWIT+ +R+D H+W
Sbjct: 130 TEVLRDAALEMNIGFFSRMQSGKPWVRMKAAASLDGKTALHNGASQWITAAPARDDGHVW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CA+LTGIGTV D+P+L VR++ T QP RIVIDS L ID R+L+ + A
Sbjct: 190 RARACAVLTGIGTVKADDPQLTVRAVATPRQPRRIVIDSRLEIDLQARILQDAPVWVVCA 249
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
K+ LE LGHEVI LPN GKVDL ++ ELG+R+INELH+EAG++LN +L+ EG
Sbjct: 250 QADADKQAALESLGHEVICLPNAAGKVDLPGLMRELGRRQINELHVEAGFKLNGSLLREG 309
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
CVDELLLY++P LIG+A +F LP SL K L FH++++IGPD+RILAR
Sbjct: 310 CVDELLLYLAPSLIGDAQGLFDLPALTSLSGKTGLVFHDVKQIGPDLRILARL 362
>gi|393776208|ref|ZP_10364504.1| riboflavin biosynthesis protein RibD [Ralstonia sp. PBA]
gi|392716597|gb|EIZ04175.1| riboflavin biosynthesis protein RibD [Ralstonia sp. PBA]
Length = 380
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 187/345 (54%), Positives = 253/345 (73%), Gaps = 6/345 (1%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
++PNPRVGCVIV++ ++ G+T+ GGNHAEI AL +AAA+G+ V +T Y+TLEPCS+
Sbjct: 24 TTPNPRVGCVIVRDGDVLGAGFTQPAGGNHAEIQALEDAAARGHGVAGATAYVTLEPCSH 83
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
FG TPPC +AL+K+GI +VI A+ DPNP VSG+G+ +L AGI V+ GL+++EA E+NIG
Sbjct: 84 FGRTPPCADALVKAGIVRVIAAMEDPNPKVSGRGLQRLREAGIEVRCGLLEREARELNIG 143
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F +RM RG PWVR+KIA+SLD T+L N SQWIT + +R D H WRAR+CAILTGIGTV
Sbjct: 144 FVARMARGTPWVRLKIAASLDGTTALENGVSQWITGEAARADGHRWRARACAILTGIGTV 203
Query: 194 LKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGG---GSCIFTATD---LPMKRK 247
+D+P+L VR+I T QP R++IDS L + P R+L G +F A+D + +
Sbjct: 204 REDDPQLTVRAIDTPRQPQRVLIDSRLDVSPRARMLATGDGPAPLVFCASDSGEAATRAE 263
Query: 248 ILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLY 307
IL G EVI + N GKVDLQA++ LG+R INELH+E+G++LN +L+ EGCVDELL+Y
Sbjct: 264 ILRQQGVEVIPVANARGKVDLQAMLKALGQRGINELHVESGFKLNGSLLREGCVDELLIY 323
Query: 308 ISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
++P L+G MF LP +LDK+++L H+I + G DIRILAR
Sbjct: 324 LAPTLLGPGRAMFDLPQLETLDKRMQLTLHDIHQTGEDIRILARL 368
>gi|427405000|ref|ZP_18895456.1| riboflavin biosynthesis protein RibD [Massilia timonae CCUG 45783]
gi|425716709|gb|EKU79679.1| riboflavin biosynthesis protein RibD [Massilia timonae CCUG 45783]
Length = 378
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 185/353 (52%), Positives = 254/353 (71%), Gaps = 1/353 (0%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL A + ++PNPR+GCVIVK+ +I G+T+ G HAEI AL +AAA+G DV
Sbjct: 21 MALALDWAARGMYITAPNPRIGCVIVKDGVVIGAGHTQPAGQAHAEIQALRDAAARGNDV 80
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +T Y+TLEPCS+ G TPPC+ AL+++G K+V+ A+ DPNPLV+G+G+AQL +AGI VK
Sbjct: 81 HGATAYVTLEPCSHHGRTPPCSNALVQAGFKRVVAAMVDPNPLVAGRGLAQLEAAGIEVK 140
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ + A E+N+GFFSRM RG+PWVR+K+A+SLD T+L SQWIT +++R D H W
Sbjct: 141 AGVLAEAAQELNVGFFSRMVRGLPWVRLKVAASLDGATALAGGESQWITGEQARADGHAW 200
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+ AI+TGIGTV DNP+L VR + T QP R+++DS L ID R+L+G I A
Sbjct: 201 RARASAIVTGIGTVKADNPQLTVRGVDTPLQPRRVIVDSRLEIDLNARILQGEPCWIVAA 260
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
K L GHEV+ LPN GKVDL A++ ELG+R+INE+H+EAG +LN +++ EG
Sbjct: 261 AGNTEKAAALAAAGHEVLTLPNARGKVDLPALMRELGRREINEVHVEAGSKLNASMVREG 320
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
CVDELL Y++P LIG MF LP L + +++FH++ ++G D+RILARF
Sbjct: 321 CVDELLAYLAPSLIGPGQGMFDLPALERLADRRQMRFHDVARVGDDLRILARF 373
>gi|421749984|ref|ZP_16187313.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Cupriavidus necator HPC(L)]
gi|409771052|gb|EKN53478.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Cupriavidus necator HPC(L)]
Length = 372
Score = 397 bits (1020), Expect = e-108, Method: Compositional matrix adjust.
Identities = 181/344 (52%), Positives = 253/344 (73%), Gaps = 6/344 (1%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
++PNPRVGCV+ K ++I GYT+ G +HAEI AL NAAA+G+D +T Y+TLEPCS+
Sbjct: 24 TTPNPRVGCVLTKGGKVIGEGYTQPAGQDHAEIQALKNAAARGFDPVGATAYVTLEPCSH 83
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
FG TPPC +AL+++GIK+V+ A+ DPNP VSG+G+ +L AGI V+ GL++KEA ++NIG
Sbjct: 84 FGRTPPCADALVRAGIKRVVAAMEDPNPTVSGRGLQRLRDAGIDVRCGLLEKEARDLNIG 143
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F SRM RG+PWVR+K+A+SLD T+L++ +SQWIT + +R+D H WRAR+CAILTGIGTV
Sbjct: 144 FVSRMTRGLPWVRVKVAASLDGGTALHDGTSQWITGQAARDDGHAWRARACAILTGIGTV 203
Query: 194 LKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS------CIFTATDLPMKRK 247
D+P+L VR+I T QP R++IDS L + R+L +F A D +R
Sbjct: 204 RDDDPQLTVRAIDTPRQPQRVLIDSRLEVPLDARMLTPDTGEFAKPVLVFCAIDDHARRT 263
Query: 248 ILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLY 307
LE G EV+VLPN GKV+L+ ++ ELG+R INELH+EAG++LN +LI EGC DELL+Y
Sbjct: 264 ALEARGAEVVVLPNAHGKVELRRMLEELGRRGINELHVEAGFKLNGSLIREGCADELLVY 323
Query: 308 ISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
++P L+G+A MF LPP L ++H++++IG D+R++AR
Sbjct: 324 LAPRLLGDAQGMFNLPPLARLQDAPAFRWHDVRQIGDDLRLIAR 367
>gi|186475387|ref|YP_001856857.1| riboflavin biosynthesis protein RibD [Burkholderia phymatum STM815]
gi|184191846|gb|ACC69811.1| riboflavin biosynthesis protein RibD [Burkholderia phymatum STM815]
Length = 373
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 179/343 (52%), Positives = 252/343 (73%), Gaps = 4/343 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNPRVGCV+VK +I G+T+ G +HAEI AL +A +G+D+ +T Y+TLEPCS
Sbjct: 23 TTDPNPRVGCVLVKNGEVIGEGFTQPAGRDHAEIQALKDARKRGHDLQGATAYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI++ + +V+ A+ DPNP VSG+G++ L AGI V+ GL++ +A E+NI
Sbjct: 83 HFGRTPPCANALIEAKLARVVAAMEDPNPRVSGRGLSMLREAGIEVRCGLLENDARELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK+A+SLD +T L + SQWITS+ +RND H WRAR+ AILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSEAARNDGHAWRARASAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPM---KRKIL 249
V +DNPR+ VR++ T QP+R++IDS L + P ++L G + +F +T P+ + +L
Sbjct: 203 VKEDNPRMTVRAVDTPRQPHRVLIDSQLEVPPDAQILAGAPTLVFCSTLSPLLTERAAVL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
D G E++ L N GKVDL ++ ELGKR++NELH+EAGY+LN +L+ EGCVDELL+Y++
Sbjct: 263 HDRGAEIVPLANENGKVDLPRMLEELGKREVNELHVEAGYKLNGSLLREGCVDELLVYVA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
P L+G ++ +MF L SLD + +L+FH + +IG D+RILAR
Sbjct: 323 PSLLGNDSMSMFNLAAPGSLDARTQLEFHAVDRIGSDVRILAR 365
>gi|241662321|ref|YP_002980681.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12D]
gi|240864348|gb|ACS62009.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12D]
Length = 370
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/354 (51%), Positives = 253/354 (71%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L ++PNPRVGCVIV++ +I GYT+ G +HAE+ A+ +A ++G DV
Sbjct: 13 ALALAEKGL-FTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEVQAIKDAQSRGQDVRG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+FG TPPC + L+++GI +V+ A+ DPNP VSG+G+ +L AG+ V+ G
Sbjct: 72 ATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLRDAGVDVRCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L+++EA E+NIGF SRM RG PWVR+K+ +SLD +T+L N SQWIT E+RND H WRA
Sbjct: 132 LLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEARNDGHRWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG----SCIF 237
R+CAILTGIGTV +DNPRL VR+I T QP R++IDS L + +L G + IF
Sbjct: 192 RACAILTGIGTVREDNPRLTVRAINTPRQPRRVLIDSALDVPLDAHILTADGHHEPTLIF 251
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A + + L + G EVI+LPN GKVDL AV+ ELG+R+INELH+EAG++LN +L+
Sbjct: 252 AAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVEAGFKLNGSLLR 311
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE+L+Y++P ++G MF + P +L+ + FH+I +IG D+RILAR
Sbjct: 312 EGLVDEILVYLAPKVLGSGQGMFNMGPLQTLEGAAEFFFHDISRIGGDLRILAR 365
>gi|309780821|ref|ZP_07675562.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_7_47FAA]
gi|404394273|ref|ZP_10986077.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_2_56FAA]
gi|308920503|gb|EFP66159.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_7_47FAA]
gi|348613371|gb|EGY62961.1| riboflavin biosynthesis protein RibD [Ralstonia sp. 5_2_56FAA]
Length = 370
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 182/354 (51%), Positives = 253/354 (71%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L ++PNPRVGCVIV++ +I GYT+ G +HAEI A+ +A ++G DV
Sbjct: 13 ALALAEKGL-FTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEIQAIKDAQSRGQDVRG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+FG TPPC + L+++GI +V+ A+ DPNP VSG+G+ +L AG+ V+ G
Sbjct: 72 ATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLRDAGVDVRCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L+++EA E+NIGF SRM RG PWVR+K+ +SLD +T+L N SQWIT E+RND H WRA
Sbjct: 132 LLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEARNDGHRWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG----SCIF 237
R+CAILTGIGTV +DNPRL VR++ T QP R++IDS L + +L G + IF
Sbjct: 192 RACAILTGIGTVREDNPRLTVRAVNTPRQPRRVLIDSALDVPLDAHILTADGHHEPTLIF 251
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A + + L + G EVI+LPN GKVDL AV+ ELG+R+INELH+EAG++LN +L+
Sbjct: 252 AAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVEAGFKLNGSLLR 311
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE+L+Y++P ++G MF + P +L+ + FH+I +IG D+RILAR
Sbjct: 312 EGLVDEVLVYLAPKVLGSGQGMFNMGPLQTLEGAAEFFFHDISRIGGDLRILAR 365
>gi|187927760|ref|YP_001898247.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12J]
gi|187724650|gb|ACD25815.1| riboflavin biosynthesis protein RibD [Ralstonia pickettii 12J]
Length = 370
Score = 391 bits (1005), Expect = e-106, Method: Compositional matrix adjust.
Identities = 183/354 (51%), Positives = 253/354 (71%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L ++PNPRVGCVIV++ +I GYT+ G +HAEI A+ +A ++G DV
Sbjct: 13 ALALAEKGL-FTTTPNPRVGCVIVRDDTVIGEGYTQPAGQDHAEIQAIKDAQSRGQDVRG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+FG TPPC + L+++GI +V+ A+ DPNP VSG+G+ +L AG+ V+ G
Sbjct: 72 ATAYVTLEPCSHFGRTPPCADRLVEAGITRVVAAMEDPNPAVSGRGLQKLRDAGVDVRCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L+++EA E+NIGF SRM RG PWVR+K+ +SLD +T+L N SQWIT E+RND H WRA
Sbjct: 132 LLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGISQWITETEARNDGHRWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG----SCIF 237
R+CAILTGIGTV +DNPRL VR+I T QP R++IDS L + +L G + IF
Sbjct: 192 RACAILTGIGTVREDNPRLTVRAINTPRQPRRVLIDSALDVPLDAHILTADGHHEPTLIF 251
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A + + L + G EVI+LPN GKVDL AV+ ELG+R+INELH+EAG++LN +L+
Sbjct: 252 AAQPEAGRMRALSERGAEVILLPNAAGKVDLAAVLRELGRREINELHVEAGFKLNGSLLR 311
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE+L+Y++P ++G MF + P +L+ + FH+I +IG D+RILAR
Sbjct: 312 EGLVDEILVYLAPKVLGSGQGMFNMGPLQTLEGAAEFFFHDISRIGGDLRILAR 365
>gi|386334308|ref|YP_006030479.1| riboflavin biosynthesis bifunctional protein ribd :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum Po82]
gi|421900207|ref|ZP_16330570.1| riboflavin biosynthesis bifunctional protein ribd :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum MolK2]
gi|206591413|emb|CAQ57025.1| riboflavin biosynthesis bifunctional protein ribd :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum MolK2]
gi|334196758|gb|AEG69943.1| riboflavin biosynthesis bifunctional protein ribd :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum Po82]
Length = 370
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/354 (52%), Positives = 254/354 (71%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L ++PNPRVGCV+V++ II G+T+ PG +HAEI A+ +A A+G+DV
Sbjct: 13 ALALAENGL-FTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKDAQARGHDVRG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+FG TPPC + L+++GI +V+ A+ DPNP VSG+G+ +L AGI V+ G
Sbjct: 72 ATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLREAGIDVRCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L+++EA E+NIGF SRM RG PWVR+K+ +SLD +T+L N SQWIT E+RND H WRA
Sbjct: 132 LLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEARNDGHRWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG----SCIF 237
R+CAILTGIGTV +DNPRL VR+I T QP RI+IDS L + +L + IF
Sbjct: 192 RACAILTGIGTVREDNPRLTVRAIPTPRQPRRILIDSGLDVPLDAHILTADDHREPTLIF 251
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A + + L + G EVI+LPN GKVDL A++ ELG+R+INELH+EAGY+LN +L+
Sbjct: 252 AARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEAGYKLNGSLLR 311
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE+L+Y++P ++G MF L P SL+ + FH+I ++G D+RILAR
Sbjct: 312 EGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDLRILAR 365
>gi|300704870|ref|YP_003746473.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia solanacearum CFBP2957]
gi|299072534|emb|CBJ43884.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia solanacearum CFBP2957]
Length = 370
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/354 (52%), Positives = 254/354 (71%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L ++PNPRVGCV+V++ II G+T+ PG +HAEI A+ +A A+G+DV
Sbjct: 13 ALALAENGL-FTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKDAQARGHDVRG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+FG TPPC + L+++GI +V+ A+ DPNP VSG+G+ +L AGI V+ G
Sbjct: 72 ATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLREAGIDVRCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L+++EA E+NIGF SRM RG PWVR+K+ +SLD +T+L N SQWIT E+RND H WRA
Sbjct: 132 LLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEARNDGHRWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG----SCIF 237
R+CAILTGIGTV +DNPRL VR+I T QP RI+IDS L + +L + IF
Sbjct: 192 RACAILTGIGTVREDNPRLTVRAIPTPRQPRRILIDSGLDVPLDAHILSADDHREPTLIF 251
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A + + L + G EVI+LPN GKVDL A++ ELG+R+INELH+EAGY+LN +L+
Sbjct: 252 AARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEAGYKLNGSLLR 311
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE+L+Y++P ++G MF L P SL+ + FH+I ++G D+RILAR
Sbjct: 312 EGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDLRILAR 365
>gi|421889101|ref|ZP_16320161.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia solanacearum K60-1]
gi|378965521|emb|CCF96909.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia solanacearum K60-1]
Length = 370
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/354 (52%), Positives = 253/354 (71%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L ++PNPRVGCV+V++ II G+T+ PG +HAEI A+ +A A G+DV
Sbjct: 13 ALALAENGL-FTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKDAQAHGHDVRG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+FG TPPC + L+++GI +V+ A+ DPNP VSG+G+ +L AGI V+ G
Sbjct: 72 ATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQRLREAGIDVRCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L+++EA E+NIGF SRM RG PWVR+K+ +SLD +T+L N SQWIT E+RND H WRA
Sbjct: 132 LLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITETEARNDGHRWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG----SCIF 237
R+CAILTGIGTV +DNPRL VR+I T QP RI+IDS L + +L + IF
Sbjct: 192 RACAILTGIGTVREDNPRLTVRAIPTPRQPRRILIDSGLDVPLDAHILTADDHREPTLIF 251
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A + + L + G EVI+LPN GKVDL A++ ELG+R+INELH+EAGY+LN +L+
Sbjct: 252 AARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEAGYKLNGSLLR 311
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE+L+Y++P ++G MF L P SL+ + FH+I ++G D+RILAR
Sbjct: 312 EGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDLRILAR 365
>gi|390573757|ref|ZP_10253920.1| riboflavin biosynthesis protein RibD [Burkholderia terrae BS001]
gi|389934270|gb|EIM96235.1| riboflavin biosynthesis protein RibD [Burkholderia terrae BS001]
Length = 373
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 181/343 (52%), Positives = 248/343 (72%), Gaps = 4/343 (1%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
+ PNPRVGCV+VK +I GYT+ G +HAEI AL +A ++G D +T Y+TLEPCS+
Sbjct: 24 TDPNPRVGCVLVKNGEVIGEGYTQPAGHDHAEIQALKDARSRGNDTRGATAYVTLEPCSH 83
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
FG TPPC ALI++ + +V+ A+ DPNP VSG+G+ L AGI V+ GL++ EA E+NIG
Sbjct: 84 FGRTPPCANALIEAKVARVVAAMEDPNPRVSGRGLTMLRDAGIEVRCGLLETEARELNIG 143
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F SRM RG PWVRMK+A+SLD +T L + SQWIT + +RND H WRAR+ AILTGIGTV
Sbjct: 144 FVSRMMRGRPWVRMKVAASLDGRTGLPSGESQWITGEAARNDGHAWRARASAILTGIGTV 203
Query: 194 LKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPM---KRKILE 250
+DNPR+ VR+I T QP+R++IDS L + P ++L G + IF +T P+ + +L
Sbjct: 204 KEDNPRMTVRAIDTPRQPHRVLIDSQLEVPPEAQILAGAPTLIFCSTLTPLLEERAAVLH 263
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
D G E++ L N GKVDL ++ EL KR++NELH+EAGY+LN +L+ EGCVDELL+Y++P
Sbjct: 264 DRGAEIVPLANENGKVDLPRMLEELAKREVNELHVEAGYKLNGSLLREGCVDELLVYLAP 323
Query: 311 ILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
L+G ++ +MF L SLD + +L+FH + +IG D+RILAR
Sbjct: 324 SLLGNDSMSMFNLAAPGSLDARTQLEFHAVDRIGSDVRILARL 366
>gi|83746190|ref|ZP_00943244.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum UW551]
gi|207744096|ref|YP_002260488.1| riboflavin biosynthesis bifunctional protein ribd :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum IPO1609]
gi|83727156|gb|EAP74280.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum UW551]
gi|206595500|emb|CAQ62427.1| riboflavin biosynthesis bifunctional protein ribd :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ralstonia solanacearum IPO1609]
Length = 370
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 186/354 (52%), Positives = 253/354 (71%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L ++PNPRVGCV+V++ II G+T+ PG +HAEI A+ +A A+G+DV
Sbjct: 13 ALALAENGL-FTTTPNPRVGCVLVRDDTIIGEGFTQPPGQDHAEIQAIKDAQARGHDVRG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+FG TPPC + L+++GI +V+ A+ DPNP VSG+G+ +L AGI V+ G
Sbjct: 72 ATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPAVSGRGLQKLREAGIDVRCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L+++EA E+NIGF SRM RG PWVR+K+ +SLD +T+L N SQWIT E+RND H WRA
Sbjct: 132 LLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITEAEARNDGHRWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG----SCIF 237
R+CAILTGIGTV +DNPRL VR+I T QP RI+IDS L + +L + IF
Sbjct: 192 RACAILTGIGTVREDNPRLTVRAIPTPRQPRRILIDSALDVPLDAHILTADDHREPTLIF 251
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A + + L G EVI+LPN GKVDL A++ ELG+R+INELH+EAGY+LN +L+
Sbjct: 252 AARPEAGRMRALAKHGAEVILLPNADGKVDLPAMLRELGRREINELHVEAGYKLNGSLLR 311
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE+L+Y++P ++G MF L P SL+ + FH+I ++G D+RILAR
Sbjct: 312 EGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAEFFFHDITRVGGDLRILAR 365
>gi|420256834|ref|ZP_14759651.1| riboflavin biosynthesis protein RibD [Burkholderia sp. BT03]
gi|398042472|gb|EJL35484.1| riboflavin biosynthesis protein RibD [Burkholderia sp. BT03]
Length = 373
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 180/343 (52%), Positives = 248/343 (72%), Gaps = 4/343 (1%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
+ PNPRVGCV+VK +I GYT+ G +HAEI AL +A ++G D +T Y+TLEPCS+
Sbjct: 24 TDPNPRVGCVLVKNGEVIGEGYTQPAGHDHAEIQALKDARSRGNDTRGATAYVTLEPCSH 83
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
FG TPPC ALI++ + +V+ A+ DPNP VSG+G+ L AGI V+ GL++ EA E+NIG
Sbjct: 84 FGRTPPCANALIEAKVARVVAAMEDPNPRVSGRGLTMLRDAGIEVRCGLLETEARELNIG 143
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F SRM RG PWVRMK+A+SLD +T L + SQWIT + +RND H WRAR+ AILTGIGTV
Sbjct: 144 FVSRMMRGRPWVRMKVAASLDGRTGLPSGESQWITGEAARNDGHAWRARASAILTGIGTV 203
Query: 194 LKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPM---KRKILE 250
+DNPR+ VR++ T QP+R++IDS L + P ++L G + IF +T P+ + +L
Sbjct: 204 KEDNPRMTVRAVDTPRQPHRVLIDSQLEVPPEAQILAGAPTLIFCSTLTPLLEERAAVLH 263
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
D G E++ L N GKVDL ++ EL KR++NELH+EAGY+LN +L+ EGCVDELL+Y++P
Sbjct: 264 DRGAEIVPLANENGKVDLPRMLEELAKREVNELHVEAGYKLNGSLLREGCVDELLVYLAP 323
Query: 311 ILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
L+G ++ +MF L SLD + +L+FH + +IG D+RILAR
Sbjct: 324 SLLGNDSMSMFNLAAPGSLDARTQLEFHAVDRIGSDVRILARL 366
>gi|374370770|ref|ZP_09628765.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Cupriavidus
basilensis OR16]
gi|373097631|gb|EHP38757.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Cupriavidus
basilensis OR16]
Length = 372
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 178/345 (51%), Positives = 251/345 (72%), Gaps = 6/345 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCV+ K+ +II G+T+ G +HAEI AL +AAA+G D +T ++TLEPCS
Sbjct: 23 TTTPNPRVGCVLSKDGKIIGQGFTQPAGQDHAEIQALKDAAARGNDPKGATAFVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC +AL+++GI +V+ A+ DPNP VSG+G+ +L AG+ V+ GL++KEA E+NI
Sbjct: 83 HFGRTPPCADALVRAGIARVVAAMEDPNPTVSGRGLQRLREAGVDVRCGLLEKEARELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF +RM RG+PWVR+K+A+SLD T+L++ SSQWIT + +R+D H WRAR+ AILTGIGT
Sbjct: 143 GFVNRMTRGLPWVRVKVAASLDGGTALHDGSSQWITGQAARDDGHAWRARASAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS------CIFTATDLPMKR 246
V DNP+LNVR++ T QP R+V+DS L I R+L +F A D +R
Sbjct: 203 VRDDNPQLNVRAVDTPRQPQRVVVDSRLEIPLDARLLTPDTGDFAKPVLVFCAFDDTARR 262
Query: 247 KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLL 306
+ LE G EV+VLPN GKV+L+ ++ ELG+R INELH+EAG++LN +LI E C DELL+
Sbjct: 263 RALEARGAEVVVLPNPHGKVELRHMLEELGRRGINELHVEAGFKLNGSLIREHCADELLI 322
Query: 307 YISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
Y++P L+G+A MF LPP L ++H+++ IG D+R++AR
Sbjct: 323 YLAPKLLGDAQGMFQLPPLARLQDATAFRWHDVRMIGEDLRLIAR 367
>gi|339326849|ref|YP_004686542.1| riboflavin biosynthesis protein RibD [Cupriavidus necator N-1]
gi|338167006|gb|AEI78061.1| riboflavin biosynthesis protein RibD [Cupriavidus necator N-1]
Length = 371
Score = 389 bits (999), Expect = e-105, Method: Compositional matrix adjust.
Identities = 173/346 (50%), Positives = 253/346 (73%), Gaps = 6/346 (1%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
N++PNPRVGCV+VK+ ++I G+T+ G +HAEI A+ +A A+G D +T Y+TLEPC
Sbjct: 22 FNTTPNPRVGCVLVKDGQVIGQGFTQPAGQDHAEIQAMKDALARGLDPAGATAYVTLEPC 81
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+FG TPPC +AL+++G+ +V+ A+ DPNP VSG+G+ +L AG+ V+ GL++KEA ++N
Sbjct: 82 SHFGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLREAGVDVRCGLLEKEARDLN 141
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
IGF SRM RG+PWVR+K+A+S+D T+L++ +SQWIT + +R+D H WRAR+CAILTGIG
Sbjct: 142 IGFVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILTGIG 201
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS------CIFTATDLPMK 245
TV DNP L VR+I T QP R+++DS L + R+L +F A + +
Sbjct: 202 TVRDDNPALTVRAIATLRQPQRVLVDSRLEVPLDARILTPDTGEFAKPVLVFCAVEDRQR 261
Query: 246 RKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELL 305
++ LE G EV+VLPN GKV+L+ ++ ELG+R INELH+EAG++LN +L+ E C DELL
Sbjct: 262 QRALESRGAEVVVLPNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCADELL 321
Query: 306 LYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+Y++P L+G+A MF LPP L + ++HEI++IG D+R++AR
Sbjct: 322 IYLAPKLLGDAQGMFNLPPLARLQDAAQFRWHEIRQIGDDLRLIAR 367
>gi|344173915|emb|CCA89102.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia syzygii R24]
Length = 370
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/354 (51%), Positives = 253/354 (71%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L ++PNPRVGCV+V++ II G+T+ G +HAEI A+ +A A+G+DV
Sbjct: 13 ALALAENGL-FTTTPNPRVGCVLVRDDTIIGEGFTQPAGQDHAEIQAIKDAQARGHDVRG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+FG TPPC + L+++G+ +V+ A+ DPNP VSG+G+ +L AGI V+ G
Sbjct: 72 ATAYVTLEPCSHFGRTPPCADRLVEAGVARVVAAMEDPNPAVSGRGLQKLREAGIDVRCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L+++EA E+NIGF SRM RG PWVR+K+ +SLD +T+L N SQWIT E+RND H WRA
Sbjct: 132 LLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITETEARNDGHRWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG----SCIF 237
R+CAILTGIGTV +DNPRL VR+I T QP RI++DS L + R+L + IF
Sbjct: 192 RACAILTGIGTVREDNPRLTVRAIPTPRQPRRILVDSGLDVPLDARILTADDHHAPTLIF 251
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A + + L + G EVI+LPN GKVDL A++ ELG+R+INELH+EAGY+LN +L+
Sbjct: 252 AARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEAGYKLNGSLLR 311
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE+L+Y++P ++G MF L P SL+ FH+I ++G D+RILAR
Sbjct: 312 EGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDISRVGGDLRILAR 365
>gi|430805374|ref|ZP_19432489.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Cupriavidus sp. HMR-1]
gi|429502411|gb|ELA00722.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Cupriavidus sp. HMR-1]
Length = 373
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/350 (50%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ ++PNPRVGCV++K+ +I GYT+ G +HAEI A+ +A ++G+D +T Y+T
Sbjct: 18 ARGMFTTTPNPRVGCVLMKDGMVIGEGYTQPAGQDHAEIQAMKDAISRGHDPAGATAYVT 77
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+FG TPPC +AL+++GI +V+ A+ DPNP VSG+G+ +L AGI V+ GL++KEA
Sbjct: 78 LEPCSHFGRTPPCADALVRAGIARVVAAMEDPNPTVSGRGLQRLRDAGIDVRCGLLEKEA 137
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
++NIGF SRM RG+PWVR+K+A+SLD T+L++ +SQWIT + +R+D H WRAR+CAIL
Sbjct: 138 RDLNIGFISRMTRGLPWVRVKVAASLDGGTALHDGTSQWITGQPARDDGHAWRARACAIL 197
Query: 188 TGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVL-KGGGS-----CIFTATD 241
TGIGTV DNP L VR+I T QP R+++DS L + ++L + G +F A +
Sbjct: 198 TGIGTVRDDNPALTVRAIPTPRQPQRVLVDSRLEVPLDAQILNRDTGDFAKPVLVFCAIE 257
Query: 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCV 301
+++ LE G EV+VLPN GKV+L+ ++ EL +R INELH+EAG++LN +LI EGC
Sbjct: 258 DKARQRALEARGAEVVVLPNPHGKVELRRMLEELARRGINELHVEAGFKLNGSLIREGCA 317
Query: 302 DELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
DELL+Y++P L+G+A MF LPP L+ + ++HE+++IG D+R++AR
Sbjct: 318 DELLVYLAPKLLGDAQGMFNLPPLSKLEDATEFRWHEVRQIGDDLRLIAR 367
>gi|299067739|emb|CBJ38948.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia solanacearum CMR15]
Length = 370
Score = 387 bits (994), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/354 (52%), Positives = 252/354 (71%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L ++PNPRVGCV+V++ +I G+T+ G +HAEI A+ +A A+G+DV
Sbjct: 13 ALALAENGL-FTTTPNPRVGCVLVRDDTVIGEGFTQPAGHDHAEIQAIKDAQARGHDVRG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+FG TPPC + LI++GI +V+ A+ DPNP VSG+G+ +L AGI V+ G
Sbjct: 72 ATAYVTLEPCSHFGRTPPCADRLIEAGIARVVTAMEDPNPTVSGRGLQRLRQAGIDVRCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L+++EA E+NIGF SRM RG PWVR+K+ +SLD +T+L N SQWIT E+R D H WRA
Sbjct: 132 LLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALNNGISQWITEAEARADGHRWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG----SCIF 237
R+CAILTGIGTV +DNPRL VR+I T QP RI+IDS L + +L G + IF
Sbjct: 192 RACAILTGIGTVREDNPRLTVRAIPTPRQPRRILIDSGLDVPLDAHILTADGHHEPTLIF 251
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A + + L + G EVI+LPN GKVDL A++ ELG+R+INELH+EAGY+LN +L+
Sbjct: 252 AARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEAGYKLNGSLLR 311
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE+L+Y++P ++G MF L P SL+ FH+I ++G D+RILAR
Sbjct: 312 EGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDITRVGGDLRILAR 365
>gi|17545434|ref|NP_518836.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Ralstonia solanacearum GMI1000]
gi|17427726|emb|CAD14245.1| probable riboflavin biosynthesis bifunctional ribd :
diaminohydroxyphosphoribosylaminopyrimidine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
oxidoreductase protein [Ralstonia solanacearum GMI1000]
Length = 370
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 184/354 (51%), Positives = 252/354 (71%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L ++PNPRVGCV+V++ +I G+T+ G +HAEI A+ +A A+G+DV
Sbjct: 13 ALALAENGL-FTTTPNPRVGCVLVRDDTVIGEGFTQPAGQDHAEIQAIKDAQARGHDVRG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+FG TPPC + L+++GI +V+ A+ DPNP VSG+G+ +L AGI V+ G
Sbjct: 72 ATAYVTLEPCSHFGRTPPCADRLVEAGIARVVAAMEDPNPTVSGRGLQRLREAGIDVRCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L+++EA E+NIGF SRM RG PWVR+K+ +SLD +T+L N SQWIT E+R D H WRA
Sbjct: 132 LLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGISQWITEAEARADGHRWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG----SCIF 237
R+CAILTGIGTV +DNPRL VR+I T QP RI+IDS L + +L G + IF
Sbjct: 192 RACAILTGIGTVREDNPRLTVRAIPTPRQPRRILIDSGLDVPLDAHILTADGHHEPTLIF 251
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A + + L + G EVI+LPN GKVDL A++ ELG+R+INELH+EAGY+LN +L+
Sbjct: 252 AARPEAGRMRALAEHGAEVILLPNADGKVDLPAMLRELGRREINELHVEAGYKLNGSLLR 311
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE+L+Y++P ++G MF L P SL+ FH+I ++G D+RILAR
Sbjct: 312 EGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDITRVGGDLRILAR 365
>gi|94311620|ref|YP_584830.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Cupriavidus metallidurans CH34]
gi|93355472|gb|ABF09561.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase ;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Cupriavidus metallidurans CH34]
Length = 373
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 175/350 (50%), Positives = 257/350 (73%), Gaps = 6/350 (1%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ ++PNPRVGCV++K+ +I GYT+ G +HAEI A+ +A ++G+D +T Y+T
Sbjct: 18 ARGMFTTTPNPRVGCVLMKDGVVIGEGYTQPAGQDHAEIQAMKDAISRGHDPAGATAYVT 77
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+FG TPPC +AL+++GI +V+ A+ DPNP VSG+G+ +L AGI V+ GL++KEA
Sbjct: 78 LEPCSHFGRTPPCADALVRAGIARVVAAMEDPNPTVSGRGLQRLRDAGIDVRCGLLEKEA 137
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
++NIGF SRM RG+PWVR+K+A+SLD T+L++ +SQWIT + +R+D H WRAR+CAIL
Sbjct: 138 RDLNIGFISRMTRGLPWVRVKVAASLDGGTALHDGTSQWITGQPARDDGHAWRARACAIL 197
Query: 188 TGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVL-KGGGS-----CIFTATD 241
TGIGTV DNP L VR+I T QP R+++DS L + ++L + G +F A +
Sbjct: 198 TGIGTVRDDNPALTVRAIPTPRQPQRVLVDSRLEVPLDAQILNRDTGDFAKPVLVFCAIE 257
Query: 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCV 301
+++ LE G EV+VLPN GKV+L+ ++ EL +R INELH+EAG++LN +LI EGC
Sbjct: 258 DKARQRALEARGVEVVVLPNPHGKVELRRMLEELARRGINELHVEAGFKLNGSLIREGCA 317
Query: 302 DELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
DELL+Y++P L+G+A MF LPP L+ + ++HE+++IG D+R++AR
Sbjct: 318 DELLVYLAPKLLGDAQGMFNLPPLSKLEDATEFRWHEVRQIGDDLRLIAR 367
>gi|187925073|ref|YP_001896715.1| riboflavin biosynthesis protein RibD [Burkholderia phytofirmans
PsJN]
gi|187716267|gb|ACD17491.1| riboflavin biosynthesis protein RibD [Burkholderia phytofirmans
PsJN]
Length = 383
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 185/360 (51%), Positives = 253/360 (70%), Gaps = 11/360 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL AK + + PNPRVGCV+VK +I G+T+ G +HAEI AL +A ++G+D+
Sbjct: 10 MERALALAKRGMYTTDPNPRVGCVLVKNGEVIGEGFTQPAGQDHAEIRALKDARSRGHDL 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC ALI++ + +V+ A+ DPNP VSG+G+A L AGI V+
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAMLRDAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA+E+NIGF SRM RG PWVRMK+A+SLD +T L + SQWIT + +R D H W
Sbjct: 130 CGLLAHEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGDSQWITGEAARADGHAW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+ AILTGIGTV +DNPR+ VR++ T QP R++IDS L + P ++L G + IF
Sbjct: 190 RARASAILTGIGTVREDNPRMTVRAVDTPRQPQRVLIDSQLDVPPDAQILAGASTLIFCG 249
Query: 240 ------TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNT 293
TD + L D G E++ L N GKVDL AV+ LG+R +NELH+EAGY+LN
Sbjct: 250 NLDGRHTD---RAAALRDRGAEIVQLANPAGKVDLPAVLKVLGQRNVNELHVEAGYKLNG 306
Query: 294 ALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+L+ EGCVDELL+Y++P L+G ++ +MF L +L+ ++KL FH + +IG D+RILARF
Sbjct: 307 SLLREGCVDELLVYLAPSLLGMDSMSMFNLSAPETLEGRVKLNFHAVDRIGEDVRILARF 366
>gi|73540480|ref|YP_295000.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Ralstonia
eutropha JMP134]
gi|72117893|gb|AAZ60156.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Ralstonia eutropha JMP134]
Length = 371
Score = 386 bits (991), Expect = e-104, Method: Compositional matrix adjust.
Identities = 174/346 (50%), Positives = 249/346 (71%), Gaps = 6/346 (1%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++PNPRVGCV+ K +II G+T+ G +HAEI AL +A +G D +T Y+TLEPC
Sbjct: 22 FTTTPNPRVGCVLSKNGQIIGQGFTQPAGQDHAEIQALKDAQTRGIDPAGATAYVTLEPC 81
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+FG TPPC +AL+++GI +V+ A+ DPNP VSG+G+ +L AGI V+ GL++KEA ++N
Sbjct: 82 SHFGRTPPCADALVRAGIARVVAAMEDPNPSVSGRGLQRLRDAGIDVRCGLLEKEARDLN 141
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
IGF SRM RG+PWVR+K+A+S+D T+L++ +SQWIT + +R+D H WRAR+CAILTGIG
Sbjct: 142 IGFVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILTGIG 201
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS------CIFTATDLPMK 245
TV DNP++ VR+I T QP R+++DS L + R+L +F+A D +
Sbjct: 202 TVRDDNPQMTVRAIPTPRQPQRVLVDSRLEVPLDARILTPDSGDLAKPVLVFSAVDDRER 261
Query: 246 RKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELL 305
R LE G EV+VLPN GKV+L+ ++ ELG+R INELH+EAG++LN +LI E C DELL
Sbjct: 262 RHALEARGAEVVVLPNPHGKVELRKMLEELGRRGINELHVEAGFKLNGSLIREHCADELL 321
Query: 306 LYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+Y++P L+G+A MF LPP L ++H++++IG D+R++AR
Sbjct: 322 IYLAPKLLGDAQGMFNLPPLSRLQDAASFRWHDVRQIGEDLRLIAR 367
>gi|194290427|ref|YP_002006334.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(n-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Cupriavidus taiwanensis LMG 19424]
gi|193224262|emb|CAQ70271.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Cupriavidus taiwanensis LMG 19424]
Length = 371
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 170/346 (49%), Positives = 252/346 (72%), Gaps = 6/346 (1%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
N++PNPRVGCV++K+ ++I G+T+ G +HAEI A+ +A ++G D +T Y+TLEPC
Sbjct: 22 FNTTPNPRVGCVLIKDGQVIGQGFTQPAGQDHAEIQAMKDALSRGLDPAGATAYVTLEPC 81
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+FG TPPC +AL+++G+ +V+ A+ DPNP VSG+G+ +L AGI V+ GL++KEA ++N
Sbjct: 82 SHFGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLRDAGIDVRCGLLEKEARDLN 141
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
IGF SRM RG+PWVR+K+A+S+D T+L++ +SQWIT + +R+D H WRAR+CAILTGIG
Sbjct: 142 IGFVSRMTRGLPWVRVKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILTGIG 201
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS------CIFTATDLPMK 245
TV DNP L VR+ T QP R+++DS L + R+L +F A + +
Sbjct: 202 TVRDDNPALTVRAFATPRQPQRVLVDSRLEVPLDARILTPDSGEFARPVLVFCAVEDRQR 261
Query: 246 RKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELL 305
++ LE G EV+VLPN GKV+L+ ++ ELG+R INELH+EAG++LN +L+ E C DELL
Sbjct: 262 QRALEARGAEVVVLPNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCADELL 321
Query: 306 LYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+Y++P L+G+A MF LPP L + ++HE+++IG D+R++AR
Sbjct: 322 IYLAPKLLGDAQGMFNLPPLARLQDAEQFRWHEVRQIGDDLRLIAR 367
>gi|300692257|ref|YP_003753252.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia solanacearum PSI07]
gi|299079317|emb|CBJ51989.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Ralstonia solanacearum PSI07]
gi|344170031|emb|CCA82409.1| bifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine
deaminase (N-terminal);
5-amino-6-(5-phosphoribosylamino) uracil reductase
[blood disease bacterium R229]
Length = 370
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/354 (51%), Positives = 251/354 (70%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L ++PNPRVGCV+V++ II G+T+ G +HAEI A+ +A A+G+DV
Sbjct: 13 ALALAENGL-FTTTPNPRVGCVLVRDDTIIGEGFTQPAGQDHAEIQAIKDAQARGHDVRG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+FG TPPC + L+++G+ +V+ A+ DPNP VSG+G+ +L AGI V+ G
Sbjct: 72 ATAYVTLEPCSHFGRTPPCADRLVEAGVARVVAAMEDPNPAVSGRGLQKLREAGIDVRCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L+++EA E+NIGF SRM RG PWVR+K+ +SLD +T+L N SQWIT E+RND H WRA
Sbjct: 132 LLEREARELNIGFVSRMTRGTPWVRVKVGASLDGRTALDNGVSQWITETEARNDGHRWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG----SCIF 237
R+CAILTGIGTV +DNPRL VR+I T QP RI++DS L + +L + IF
Sbjct: 192 RACAILTGIGTVREDNPRLTVRAIPTPRQPRRILVDSGLDVPLDAHILTADDHHAPTLIF 251
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A + + L G EVI+LPN GKVDL A++ ELG+R+INELH+EAGY+LN +L+
Sbjct: 252 AARPEAGRMRALAKHGAEVILLPNADGKVDLPAMLRELGRREINELHVEAGYKLNGSLLR 311
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE+L+Y++P ++G MF L P SL+ FH+I ++G D+RILAR
Sbjct: 312 EGLVDEILVYLAPKVLGSGQGMFNLGPLQSLEGAAAFFFHDISRVGGDLRILAR 365
>gi|209517119|ref|ZP_03265966.1| riboflavin biosynthesis protein RibD [Burkholderia sp. H160]
gi|209502512|gb|EEA02521.1| riboflavin biosynthesis protein RibD [Burkholderia sp. H160]
Length = 383
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 186/357 (52%), Positives = 251/357 (70%), Gaps = 5/357 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL AK + + PNPRVGCV+V+ +I GYT+ G +HAEI AL +A ++G+D+
Sbjct: 10 MERALALAKRGMYTTDPNPRVGCVLVRNGEVIGEGYTQPAGQDHAEIRALKDARSRGHDL 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC ALI++ I +VI A+ DPNP VSG+G+A L AGI V+
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCANALIEAQIGRVIAAMEDPNPQVSGRGLAMLREAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA E+NIGF SRM RG PWVRMK+A+SLD +T L + SQWITS +R D H W
Sbjct: 130 CGLLANEARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSAAARADGHAW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+ AILTGIGTV +DNPR+ VR++ T QP R++IDS L + ++L G + IF
Sbjct: 190 RARASAILTGIGTVREDNPRMTVRAVDTPRQPRRVLIDSQLDVPLDAQILAGAPTLIFCG 249
Query: 240 ---TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
L + L + G E++ LPN GKVDL ++ LG+R +NELH+EAGY+LN +L+
Sbjct: 250 HLDARLEERASALRERGAEIVALPNAAGKVDLPRMLSVLGERNVNELHVEAGYKLNGSLL 309
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
EGCVDELL+Y++P L+G ++ +MF LP L+ ++KL FH I++IG D+RILARF
Sbjct: 310 REGCVDELLVYLAPSLLGMDSMSMFNLPSPDLLEDRVKLNFHTIERIGDDLRILARF 366
>gi|407714479|ref|YP_006835044.1| Riboflavin biosynthesis protein [Burkholderia phenoliruptrix
BR3459a]
gi|407236663|gb|AFT86862.1| Riboflavin biosynthesis protein [Burkholderia phenoliruptrix
BR3459a]
Length = 385
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 181/357 (50%), Positives = 256/357 (71%), Gaps = 5/357 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL AK + + PNPRVGCVIV+ +I G+T+ G +HAEI A+ +A ++G+D+
Sbjct: 10 MERALALAKRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKDARSRGHDL 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+FG TPPC ALI++ + +V+ A+ DPNP VSG+G+A L AGI V+
Sbjct: 70 RGATVYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAMLRDAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA E+NIGF SRM RG PWVRMK+A+SLD +T L + SQWIT + +R D H W
Sbjct: 130 CGLLANEAQELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAARADGHAW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+ AILTGIGTV +D+PR+ VR++ TS QP R++IDS L + P ++L G + IF
Sbjct: 190 RARASAILTGIGTVREDDPRMTVRAVDTSRQPQRVLIDSQLEVSPQAQILAGAPTLIFCG 249
Query: 240 T-DLPMKRKI--LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
D ++ L + G E++ + N GKVDL A++ LG+R++NELH+EAGY+LN +L+
Sbjct: 250 NLDERHSERVQALRNRGAEIVEMANAAGKVDLPAMLKVLGERQVNELHVEAGYKLNGSLL 309
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
EGCVDELL+Y++P L+G ++ +MF L +L+ ++KL FH +++IG D+RILARF
Sbjct: 310 REGCVDELLVYLAPSLLGNDSMSMFNLSAPATLEGRVKLAFHNVERIGDDLRILARF 366
>gi|221201163|ref|ZP_03574203.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
CGD2M]
gi|221206384|ref|ZP_03579397.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
CGD2]
gi|221213661|ref|ZP_03586635.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
CGD1]
gi|221166450|gb|EED98922.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
CGD1]
gi|221173693|gb|EEE06127.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
CGD2]
gi|221179013|gb|EEE11420.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans
CGD2M]
Length = 373
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/344 (53%), Positives = 243/344 (70%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK +I G+T+ PG +HAE+ AL +A A+G+DV STVY+TLEPCS
Sbjct: 23 TTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKDARARGHDVAGSTVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI++ + KV+ A+ DPNPLVSG+G+ L AGI V+ GL+ EA E+NI
Sbjct: 83 HFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGMLRDAGIDVRCGLLAHEAGELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEAARADGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +D+P+L VR I T QP R+++DS L + R+L+G IF D + L
Sbjct: 203 VREDDPQLTVRGIDTPRQPQRVLVDSRLELPLDARLLEGAPLLIFCGRLDADGEARASAL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ G E++ L N GKVDL A++ LG R INELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 KARGAEIVSLANAHGKVDLGAMLSALGARGINELHVEAGHKLNGSLLRERCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G +A MF L SLD + +L FH I++IG D+RILAR
Sbjct: 323 PSLLGADAAGMFDLAAPASLDARTRLTFHHIERIGDDLRILARI 366
>gi|377820157|ref|YP_004976528.1| Pyrimidine reductase [Burkholderia sp. YI23]
gi|357934992|gb|AET88551.1| Pyrimidine reductase [Burkholderia sp. YI23]
Length = 370
Score = 384 bits (985), Expect = e-104, Method: Compositional matrix adjust.
Identities = 180/341 (52%), Positives = 240/341 (70%), Gaps = 1/341 (0%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCV+VK +I G+T+ G +HAE+ AL +A ++G D +T Y++LEPCS
Sbjct: 23 TTTPNPRVGCVLVKNGEVIGMGFTQPAGQDHAEVQALKDARSRGKDPRGATAYVSLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPCT ALI + ++KVI A+ DPNP VSG+G+A L AGI V+ GL+ EA E+NI
Sbjct: 83 HFGRTPPCTHALIDARVEKVIAAMEDPNPAVSGRGLAMLRDAGIDVRCGLLANEAQEMNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM R PWVRMK+A++LD +T L + SQWIT +++R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRRRPWVRMKVAATLDGRTGLPSGESQWITGEDARADGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDL-PMKRKILED 251
V +D+P+L VR++ T QP R++IDS L + R+L G IF A D P + L +
Sbjct: 203 VREDDPQLTVRAVDTPRQPQRVLIDSRLDVPLHARILDGAPPWIFHAADAEPARIDALRE 262
Query: 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPI 311
G E I L N GKVDL A++ L R INELH+EAG++LN +L+ EGCVDELL+Y++P
Sbjct: 263 KGAEPIELSNEHGKVDLPAMLTALADRGINELHVEAGHKLNGSLLREGCVDELLVYLAPS 322
Query: 312 LIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
L+G A MF P +LD + LKFH I ++G D+RILARF
Sbjct: 323 LLGSAPGMFDFAPPETLDARPHLKFHRIDRLGDDLRILARF 363
>gi|421473867|ref|ZP_15921943.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CF2]
gi|400233328|gb|EJO62883.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans CF2]
Length = 373
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 184/344 (53%), Positives = 243/344 (70%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK +I G+T+ PG +HAE+ AL +A A+G+DV STVY+TLEPCS
Sbjct: 23 TTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKDARARGHDVAGSTVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI++ + KV+ A+ DPNPLVSG+G+ L AGI V+ GL+ EA E+NI
Sbjct: 83 HFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGMLRDAGIDVRCGLLAHEAGELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEAARADGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +D+P+L VR I T QP R+++DS L + R+L+G IF D + L
Sbjct: 203 VREDDPQLTVRGIDTPRQPQRVLVDSRLELPLDARLLEGAPLLIFCGRLDADGEARASAL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ G E++ L N GKVDL A++ LG R INELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 KARGAEIVSLANAHGKVDLGAMLSALGARGINELHVEAGHKLNGSLLRERCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G +A MF L SLD + +L FH I++IG D+RILAR
Sbjct: 323 PSLLGADAAGMFDLAAPASLDARTRLVFHHIERIGDDLRILARI 366
>gi|161525607|ref|YP_001580619.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC
17616]
gi|189349664|ref|YP_001945292.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia
multivorans ATCC 17616]
gi|160343036|gb|ABX16122.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC
17616]
gi|189333686|dbj|BAG42756.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Burkholderia
multivorans ATCC 17616]
Length = 373
Score = 383 bits (983), Expect = e-104, Method: Compositional matrix adjust.
Identities = 183/344 (53%), Positives = 243/344 (70%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK +I G+T+ PG +HAE+ AL +A A+G+DV STVY+TLEPCS
Sbjct: 23 TTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKDARARGHDVAGSTVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI++ + KV+ A+ DPNPLVSG+G+ L AGI V+ GL+ EA E+NI
Sbjct: 83 HFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGMLRDAGIDVRCGLLAHEAGELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEAARADGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +D+P+L VR + T QP R+++DS L + R+L+G IF D + L
Sbjct: 203 VREDDPQLTVRGVDTPRQPQRVLVDSRLELPLDARLLEGAPLLIFCGRLDADGEARASAL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ G E++ L N GKVDL A++ LG R INELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 KARGAEIVSLANAHGKVDLGAMLSALGARGINELHVEAGHKLNGSLLRERCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G +A MF L SLD + +L FH I++IG D+RILAR
Sbjct: 323 PSLLGADAAGMFDLAAPASLDARTRLVFHHIERIGDDLRILARI 366
>gi|91784896|ref|YP_560102.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia
xenovorans LB400]
gi|91688850|gb|ABE32050.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Burkholderia xenovorans LB400]
Length = 389
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 185/360 (51%), Positives = 254/360 (70%), Gaps = 11/360 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+ + + PNPRVGCV+VK +I G+T+ G +HAEI AL +A ++G+D+
Sbjct: 10 MERALALARRGMYTTDPNPRVGCVLVKNGAVIGEGFTQPAGQDHAEIRALKDARSRGHDL 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC ALI++ + V+ A+ DPNPLVSG+G+A L AGI V+
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCVNALIEAQVALVVAAMEDPNPLVSGRGLAILRDAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA+E+NIGF SRM RG PWVRMK+A+SLD +T L + SQWIT + +R D H W
Sbjct: 130 CGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAARADGHAW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+ AILTGIGTV +D+PR+ VR++ T QP R++IDS L + P ++L G + IF
Sbjct: 190 RARASAILTGIGTVREDDPRMTVRAVDTPRQPQRVLIDSQLDVPPEAQILAGAPTLIFCG 249
Query: 240 ------TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNT 293
TD + L D G E++ L N GKVDL AV+ LG+R +NELH+EAGY+LN
Sbjct: 250 NLDQRHTD---RANALRDRGAEIVQLANPAGKVDLPAVLKVLGERNVNELHVEAGYKLNG 306
Query: 294 ALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+L+ EGCVDELL+Y++P L+G ++ +MF+L +LD ++KL FH + +IG D+RILARF
Sbjct: 307 SLLREGCVDELLVYLAPSLLGMDSMSMFSLTTPETLDDRVKLHFHAVDRIGDDLRILARF 366
>gi|113868804|ref|YP_727293.1| pyrimidine deaminase/reductase [Ralstonia eutropha H16]
gi|113527580|emb|CAJ93925.1| pyrimidine deaminase/reductase [Ralstonia eutropha H16]
Length = 371
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 171/344 (49%), Positives = 251/344 (72%), Gaps = 6/344 (1%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
++PNPRVGCV+VK+ ++I G+T+ G +HAEI A+ +A A+G D ST Y+TLEPCS+
Sbjct: 24 TTPNPRVGCVLVKDGQVIGQGFTQPAGQDHAEIQAMKDALARGLDPAGSTAYVTLEPCSH 83
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
FG TPPC +AL+++G+ +V+ A+ DPNP VSG+G+ +L AG+ V+ GL++KEA ++NIG
Sbjct: 84 FGRTPPCADALVRAGVARVVAAMEDPNPSVSGRGLQRLREAGVDVRCGLLEKEARDLNIG 143
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F SRM RG+PWVR+K+A+S+D T+L++ +SQWIT + +R+D H WRAR+CAILTGIGTV
Sbjct: 144 FVSRMTRGLPWVRIKVAASMDGGTALHDGTSQWITGQAARDDGHAWRARACAILTGIGTV 203
Query: 194 LKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS------CIFTATDLPMKRK 247
DNP L VR+I T QP R+++DS L + ++L +F A + +++
Sbjct: 204 RDDNPALTVRAIATPRQPQRVLVDSRLEVPLDAQILTPDTGQFAKPVLVFCAVEDRERQR 263
Query: 248 ILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLY 307
LE G EV+VL N GKV+L+ ++ ELG+R INELH+EAG++LN +L+ E C DELL+Y
Sbjct: 264 ALEGRGAEVVVLSNPHGKVELRRMLEELGRRGINELHVEAGFKLNGSLVREHCADELLIY 323
Query: 308 ISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
++P L+G+A MF LPP L + ++HEI++IG D+R++AR
Sbjct: 324 LAPKLLGDAQGMFNLPPLARLQDAAQFRWHEIRQIGDDLRLIAR 367
>gi|421470357|ref|ZP_15918739.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC
BAA-247]
gi|400227864|gb|EJO57839.1| riboflavin biosynthesis protein RibD [Burkholderia multivorans ATCC
BAA-247]
Length = 628
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/357 (52%), Positives = 248/357 (69%), Gaps = 5/357 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A + ++PNPRVGCVIVK +I G+T+ PG +HAE+ AL +A A+G+DV
Sbjct: 10 MQRALALAARGMYTTTPNPRVGCVIVKHGEVIGEGHTQPPGQDHAEVQALKDARARGHDV 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
STVY+TLEPCS+FG TPPC ALI++ + KV+ A+ DPNPLVSG+G+ L AGI V+
Sbjct: 70 AGSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPLVSGRGLGMLRDAGIDVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA E+NIGF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H W
Sbjct: 130 CGLLAHEAGELNIGFVSRMTRGRPWVRMKAAASLDGRTALPSGESQWITGEAARADGHAW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAILTGIGTV +D+P+L VR I T QP R+++DS L + R+L+G IF
Sbjct: 190 RARACAILTGIGTVREDDPQLTVRGIDTPRQPQRVLVDSRLELPLDARLLEGAPLLIFCG 249
Query: 240 ---TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
D + L+ G E++ L N GKVDL A++ LG R INELH+EAG++LN +L+
Sbjct: 250 RLDADGEARASALKARGAEIVSLANAHGKVDLGAMLSALGARGINELHVEAGHKLNGSLL 309
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
E CVDELL+Y++P L+G +A MF L SLD + +L FH I++IG D+RILAR
Sbjct: 310 RERCVDELLVYLAPSLLGADAAGMFDLAAPASLDARTRLVFHHIERIGDDLRILARI 366
>gi|385208456|ref|ZP_10035324.1| riboflavin biosynthesis protein RibD [Burkholderia sp. Ch1-1]
gi|385180794|gb|EIF30070.1| riboflavin biosynthesis protein RibD [Burkholderia sp. Ch1-1]
Length = 391
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/360 (51%), Positives = 253/360 (70%), Gaps = 11/360 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+ + + PNPRVGCV+VK +I G+T+ G +HAEI AL +A ++G+D+
Sbjct: 10 MERALALARRGMYTTDPNPRVGCVLVKNGEVIGEGFTQPAGQDHAEIRALKDARSRGHDL 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC ALI++ + V+ A+ DPNPLVSG+G+A L AGI V+
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCVNALIEAQVALVVAAMEDPNPLVSGRGLAILRDAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA+E+NIGF SRM RG PWVRMK+A+SLD +T L + SQWIT + +R D H W
Sbjct: 130 CGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAARADGHAW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+ AILTGIGTV D+PR+ VR++ T QP R++IDS L + P ++L G + IF
Sbjct: 190 RARASAILTGIGTVRGDDPRMTVRAVDTPRQPQRVLIDSQLDVPPEAQILAGAPTLIFCG 249
Query: 240 ------TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNT 293
TD + L D G E++ L N GKVDL AV+ LG+R +NELH+EAGY+LN
Sbjct: 250 NLDQRHTD---RANALRDRGAEIVQLANPAGKVDLPAVLKVLGERNVNELHVEAGYKLNG 306
Query: 294 ALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+L+ EGCVDELL+Y++P L+G ++ +MF+L +L+ ++KL FH + +IG D+RILARF
Sbjct: 307 SLLREGCVDELLVYLAPSLLGMDSMSMFSLAAPETLEDRVKLSFHAVDRIGDDLRILARF 366
>gi|295677354|ref|YP_003605878.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1002]
gi|295437197|gb|ADG16367.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1002]
Length = 383
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 184/357 (51%), Positives = 251/357 (70%), Gaps = 5/357 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL AK + + PNPRVGCV+V+ +I GYT+ G +HAEI AL +A ++G+D+
Sbjct: 10 MERALALAKRGMYTTDPNPRVGCVLVRNGEVIGEGYTQPAGQDHAEIRALKDARSRGHDL 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC ALI++ I +VI A+ DPNP VSG+G+A L AGI V+
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCANALIEAQIGRVIAAMEDPNPQVSGRGLAMLREAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA E+NIGF SRM RG PWVRMK+A+SLD +T L + SQWITS +R D H W
Sbjct: 130 CGLLANEARELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGESQWITSAAARADGHAW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+ AILTGIGTV +DNPR+ VR++ T QP+R++IDS L + ++L G + IF
Sbjct: 190 RARASAILTGIGTVREDNPRMTVRAVDTPRQPHRVLIDSQLDVPLDAQILAGAPTLIFCG 249
Query: 240 ---TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
L + L + G E++ LPN GKVDL ++ LG+R +NELH+EAGY+LN +L+
Sbjct: 250 ELDARLEERAVALRERGAEIVPLPNAFGKVDLPRMLSVLGERNVNELHVEAGYKLNGSLL 309
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
EGCVDELL+Y++P L+G ++ +MF L L+ ++KL FH +++IG D+RILARF
Sbjct: 310 REGCVDELLVYLAPSLLGMDSMSMFNLDSPDLLEDRVKLNFHMVERIGDDLRILARF 366
>gi|307730708|ref|YP_003907932.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1003]
gi|307585243|gb|ADN58641.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1003]
Length = 384
Score = 380 bits (977), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/357 (49%), Positives = 253/357 (70%), Gaps = 5/357 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+ + + PNPRVGCVIV+ +I G+T+ G +HAEI A+ +A ++G+D+
Sbjct: 10 MERALALARRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKDARSRGHDL 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC ALI++ + +V+ A+ DPNP VSG+G+A L AGI V+
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCASALIEAQVGRVVAAMEDPNPQVSGRGLAMLRDAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA+E+NIGF SRM RG PWVRMK+A+SLD +T L + SQWIT + +R D H W
Sbjct: 130 CGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAARADGHAW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+ AILTGIGTV +D+PR+ VR+++T QP R++IDS L + P ++L G + IF
Sbjct: 190 RARASAILTGIGTVREDDPRMTVRAVETPRQPQRVLIDSQLEVPPQAQILAGAPTLIFCG 249
Query: 240 TDLPMKR---KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
R + L D G E++ + N GKVDL ++ LG+R++NELH+EAGY+LN +L+
Sbjct: 250 NLDERHRERAQALRDRGAEIVEMANGAGKVDLPGMLKALGERQVNELHVEAGYKLNGSLL 309
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
EGCVDELL+Y++P L+G ++ +MF L +L+ ++KL FH +++IG D+RILAR
Sbjct: 310 REGCVDELLVYLAPSLLGIDSMSMFNLSAPETLEGRVKLAFHNVERIGDDLRILARL 366
>gi|167580933|ref|ZP_02373807.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
TXDOH]
Length = 378
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/344 (52%), Positives = 245/344 (71%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G D+ ++TVY+TLEPCS
Sbjct: 23 TTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDLRDATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+A L AGI V+ GL+ EA+E+NI
Sbjct: 83 HFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVRCGLLAHEAHEMNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + S+WIT +R+D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +D+P+LNVR + T QP R++IDS L I R+L+GG IF + + L
Sbjct: 203 VREDDPQLNVRGVDTPRQPRRVLIDSRLDIPLTARLLEGGSLLIFCGALDAQSEARAQAL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
G E++ L N GKVDL A++ LG+R INELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 RARGAEIVPLANARGKVDLPAMLAALGERGINELHVEAGHKLNGSLLRERCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G +A MF L SL + +L FH ++++G D+RILARF
Sbjct: 323 PSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDLRILARF 366
>gi|413963252|ref|ZP_11402479.1| Pyrimidine reductase [Burkholderia sp. SJ98]
gi|413929084|gb|EKS68372.1| Pyrimidine reductase [Burkholderia sp. SJ98]
Length = 370
Score = 380 bits (976), Expect = e-103, Method: Compositional matrix adjust.
Identities = 177/341 (51%), Positives = 239/341 (70%), Gaps = 1/341 (0%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCV+VK +I GYT+ G +HAE+ AL +A ++G D +T Y++LEPCS
Sbjct: 23 TTTPNPRVGCVLVKNGEVIGMGYTQPAGQDHAEVQALKDARSRGKDPRGATAYVSLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + ++KVI A+ DPNP VSG+G+ L AGI V+ GL+ EA+E+NI
Sbjct: 83 HFGRTPPCAHALIDARVEKVIAAMEDPNPSVSGRGLTMLRDAGIDVRCGLLANEAHEMNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM R PWVRMK+A++LD +T L SQWIT +++R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRRRPWVRMKVAATLDGRTGLPTGESQWITGEDARADGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDL-PMKRKILED 251
V +D+P+L VR++ T QP R++IDS L + R+L G IF + D P + L +
Sbjct: 203 VREDDPQLTVRAVDTPRQPQRVLIDSRLDVPMHARILDGAPPWIFHSADADPARIDALRE 262
Query: 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPI 311
G ++I L N GKVDL A++ L R INELH+EAG++LN +L+ EGCVDELL+Y++P
Sbjct: 263 KGADLIELSNEYGKVDLPAMLTALADRGINELHVEAGHKLNGSLLHEGCVDELLIYLAPS 322
Query: 312 LIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
L+G A MF P +LD + LKFH I ++G D+RILARF
Sbjct: 323 LLGSAPGMFDFAPPDTLDARPHLKFHRIDRLGDDLRILARF 363
>gi|167837547|ref|ZP_02464430.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
MSMB43]
gi|424903209|ref|ZP_18326722.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
MSMB43]
gi|390931082|gb|EIP88483.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
MSMB43]
Length = 374
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 179/344 (52%), Positives = 246/344 (71%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G D+ ++TVY+TLEPCS
Sbjct: 23 TTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDLRDATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC+ ALI + + KV+ A+ DPNP VSG+G+A L AGI V+ GL+ EA+E+NI
Sbjct: 83 HFGRTPPCSHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVRCGLLAHEAHEMNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + S+WIT +R D H WRAR+CA+LTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAAREDGHKWRARACAVLTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +D+P+LNVR + T QP R++IDS L I R+L+GG IF + + + L
Sbjct: 203 VREDDPQLNVRGVDTPRQPRRVLIDSRLDIPLAARLLEGGSLLIFCGALDSQSEARAQAL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
G E++ L N GKVDL A++ LG+R INELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 RARGAEIVPLANARGKVDLPAMLAALGERGINELHVEAGHKLNGSLLRERCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G +A MF L SL + +L FH ++++G D+RILARF
Sbjct: 323 PSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDLRILARF 366
>gi|257138273|ref|ZP_05586535.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
E264]
Length = 369
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/344 (52%), Positives = 245/344 (71%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G D+ ++TVY+TLEPCS
Sbjct: 14 TTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDLRDATVYVTLEPCS 73
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+A L AGI V+ GL+ EA+E+NI
Sbjct: 74 HFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVRCGLLAHEAHEMNI 133
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + S+WIT +R+D H WRAR+CAILTGIGT
Sbjct: 134 GFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKWRARACAILTGIGT 193
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +D+P+LNVR + T QP R++IDS L I R+L+GG IF + + L
Sbjct: 194 VREDDPQLNVRGVDTPRQPRRVLIDSRLDIPLTARLLEGGSLLIFCGALDAQSEARAQAL 253
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
G E++ L N GKVDL A++ LG+R INELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 254 RARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEAGHKLNGSLLRERCVDELLVYLA 313
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G +A MF L SL + +L FH ++++G D+RILARF
Sbjct: 314 PSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDLRILARF 357
>gi|83718892|ref|YP_442086.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
E264]
gi|83652717|gb|ABC36780.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
E264]
Length = 378
Score = 380 bits (975), Expect = e-103, Method: Compositional matrix adjust.
Identities = 180/344 (52%), Positives = 245/344 (71%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G D+ ++TVY+TLEPCS
Sbjct: 23 TTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDLRDATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+A L AGI V+ GL+ EA+E+NI
Sbjct: 83 HFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVRCGLLAHEAHEMNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + S+WIT +R+D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +D+P+LNVR + T QP R++IDS L I R+L+GG IF + + L
Sbjct: 203 VREDDPQLNVRGVDTPRQPRRVLIDSRLDIPLTARLLEGGSLLIFCGALDAQSEARAQAL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
G E++ L N GKVDL A++ LG+R INELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 RARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEAGHKLNGSLLRERCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G +A MF L SL + +L FH ++++G D+RILARF
Sbjct: 323 PSLLGADAAAMFDLAAPASLIDRTRLAFHSVERVGDDLRILARF 366
>gi|323527043|ref|YP_004229196.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1001]
gi|323384045|gb|ADX56136.1| riboflavin biosynthesis protein RibD [Burkholderia sp. CCGE1001]
Length = 385
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 179/357 (50%), Positives = 254/357 (71%), Gaps = 5/357 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL AK + + PNPRVGCVIV+ +I G+T+ G +HAEI A+ +A ++G+D+
Sbjct: 10 MERALALAKRGMYTTDPNPRVGCVIVQNGEVIGEGFTQPAGQDHAEIRAMKDARSRGHDL 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+FG TPPC ALI++ + +V+ A+ DPNP VSG+G+A L AGI V+
Sbjct: 70 RGATVYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAMLRDAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA E+NIGF SRM RG PWVRMK+A+SLD +T L + SQWIT + +R D H W
Sbjct: 130 CGLLANEAQELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAARADGHAW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+ AILTGIGTV +D+PR+ VR++ T QP R++IDS L + P ++L G + IF
Sbjct: 190 RARASAILTGIGTVREDDPRMTVRAVDTPRQPQRVLIDSQLEVSPQAQILAGAPTLIFCG 249
Query: 240 T-DLPMKRKI--LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
D ++ L + G E++ + N GKVDL ++ LG+R++NELH+EAGY+LN +L+
Sbjct: 250 NLDERHSERVQALRNRGAEIVEMANAAGKVDLPGMLKVLGERQVNELHVEAGYKLNGSLL 309
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
EGCVDELL+Y++P L+G ++ +MF L +L+ ++KL FH +++IG D+RILARF
Sbjct: 310 REGCVDELLVYLAPSLLGNDSMSMFNLSAPATLEGRVKLAFHNVERIGDDLRILARF 366
>gi|170693630|ref|ZP_02884788.1| riboflavin biosynthesis protein RibD [Burkholderia graminis C4D1M]
gi|170141412|gb|EDT09582.1| riboflavin biosynthesis protein RibD [Burkholderia graminis C4D1M]
Length = 385
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 178/357 (49%), Positives = 252/357 (70%), Gaps = 5/357 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+ + + PNPRVGCVIVK +I G+T+ G +HAEI A+ +A ++G+D+
Sbjct: 10 MERALALARRGMYTTDPNPRVGCVIVKNGEVIGEGFTQPAGQDHAEIRAMKDARSRGHDL 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC ALI++ + +V+ A+ DPNP VSG+G+A L AGI V+
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCANALIEAQVARVVAAMEDPNPQVSGRGLAILRDAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA+E+NIGF SRM RG PWVRMK+A+SLD +T L + SQWIT + +R D H W
Sbjct: 130 CGLLANEAHELNIGFVSRMTRGRPWVRMKVAASLDGRTGLPSGVSQWITGEAARADGHAW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+ AILTGIGTV +D+PR+ VR++ T QP R++IDS L + P ++L G + IF
Sbjct: 190 RARASAILTGIGTVREDDPRMTVRAVDTPRQPQRVLIDSQLEVSPHAQILAGAPTLIFCG 249
Query: 240 TDLPMKRKILEDL---GHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
R+ E L G E++ + N GKVDL ++ LG+R++NELH+EAGY+LN +L+
Sbjct: 250 NLDERHRERAEALRERGAEIVQMANAAGKVDLPGLLKVLGERQVNELHVEAGYKLNGSLL 309
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
EGCVDELL+Y++P L+G ++ +MF L +L+ ++KL FH +++IG D+RILAR
Sbjct: 310 REGCVDELLVYLAPSLLGIDSMSMFNLGAPETLEGRVKLAFHNVERIGEDLRILARL 366
>gi|115350875|ref|YP_772714.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria AMMD]
gi|115280863|gb|ABI86380.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia
ambifaria AMMD]
Length = 373
Score = 378 bits (970), Expect = e-102, Method: Compositional matrix adjust.
Identities = 185/355 (52%), Positives = 248/355 (69%), Gaps = 7/355 (1%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
+TLA A+ ++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G+DV
Sbjct: 14 LTLA---ARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKDARARGHDVA 70
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
STVY+TLEPCS+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L AGI V+
Sbjct: 71 GSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRC 130
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
GL+ EA E+NIGF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WR
Sbjct: 131 GLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAARLDGHAWR 190
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA- 239
AR+CAILTGIGTV +DNP L VR I T QP R+++DS L + R+L+G IF
Sbjct: 191 ARACAILTGIGTVREDNPLLTVRGIDTPRQPQRVLVDSRLDLPLDARLLEGAPLLIFCGR 250
Query: 240 --TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
++ K+L+ G E++ L N GKVDL A++ LG R +NELH+EAG++LN +L+
Sbjct: 251 LDAAGEVRAKVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEAGHKLNGSLLR 310
Query: 298 EGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
E CVDELL+Y++P L+G +A MF L SLD + +L FH +++IG D+RILAR
Sbjct: 311 EQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDARTRLAFHSVERIGDDLRILAR 365
>gi|78065536|ref|YP_368305.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia sp.
383]
gi|77966281|gb|ABB07661.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia sp.
383]
Length = 373
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/358 (51%), Positives = 251/358 (70%), Gaps = 11/358 (3%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
+TLA A+ ++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+GYDV
Sbjct: 14 LTLA---ARGMYTTAPNPRVGCVIVKDGEVIGEGFTQPAGQDHAEVQALKDARARGYDVA 70
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
STVY+TLEPCS+FG TPPC ALI++ + KV+ A+ DPNP VSG+G+ L AGI V+
Sbjct: 71 GSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRC 130
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
GL+ EA E+NIGF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WR
Sbjct: 131 GLLAHEAGELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAARLDGHAWR 190
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF--- 237
AR+CAILTGIGTV +DNP L VR I T QP RI++DS L + R+L+G IF
Sbjct: 191 ARACAILTGIGTVREDNPLLTVRGIDTPRQPQRILVDSRLDLPLDARLLEGAPLLIFCGR 250
Query: 238 --TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
A++L + +L+ G E++ + N GKVDL A++ LG R +NELH+EAG++LN +L
Sbjct: 251 LDAASEL--RANVLKARGAEIVPIANAQGKVDLPAMLAALGARGVNELHVEAGHKLNGSL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+ E CVDELL+Y++P L+G +A MF L +LD + +L FH +++G D+RILARF
Sbjct: 309 LREQCVDELLVYLAPSLLGADAAGMFDLAAPANLDARTRLSFHGFERVGDDLRILARF 366
>gi|167895478|ref|ZP_02482880.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
7894]
gi|167920101|ref|ZP_02507192.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
BCC215]
gi|237813427|ref|YP_002897878.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
MSHR346]
gi|237504754|gb|ACQ97072.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
MSHR346]
Length = 378
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/345 (52%), Positives = 245/345 (71%), Gaps = 6/345 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G D+ ++TVY+TLEPCS
Sbjct: 23 TTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDLRDATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC LI + + KV+ A+ DPNP VSG+G+A L AGI V+ GL+ EA+E+NI
Sbjct: 83 HFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVRCGLLAHEAHEMNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + S+WIT +R+D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF----TATDLPMKRKI 248
V +D+P+LNVR + T QP R++IDS L I R+L+GG +F A P +
Sbjct: 203 VREDDPQLNVRGVDTPRQPRRVLIDSRLDIPLAARLLEGGSLLVFCGALDAQSEP-RADA 261
Query: 249 LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYI 308
L G E++ L N GKVDL A++ LG+R INELH+EAG++LN +L+ E CVDELL+Y+
Sbjct: 262 LRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEAGHKLNGSLLRERCVDELLVYL 321
Query: 309 SPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+P L+G +A MF L SL + +L FH ++++G D+RILARF
Sbjct: 322 APSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDLRILARF 366
>gi|53720234|ref|YP_109220.1| multifunctional riboflavin biosynthetic protein [deaminase,
reductase [Burkholderia pseudomallei K96243]
gi|76810186|ref|YP_334473.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1710b]
gi|126453712|ref|YP_001067304.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1106a]
gi|134280288|ref|ZP_01766999.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
305]
gi|167720794|ref|ZP_02404030.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
DM98]
gi|167739778|ref|ZP_02412552.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 14]
gi|167825410|ref|ZP_02456881.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 9]
gi|167846901|ref|ZP_02472409.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
B7210]
gi|167903861|ref|ZP_02491066.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
NCTC 13177]
gi|226193754|ref|ZP_03789356.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
Pakistan 9]
gi|242314762|ref|ZP_04813778.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1106b]
gi|254196130|ref|ZP_04902555.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
S13]
gi|254259958|ref|ZP_04951012.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1710a]
gi|254298894|ref|ZP_04966344.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
406e]
gi|386860808|ref|YP_006273757.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1026b]
gi|403519730|ref|YP_006653864.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
BPC006]
gi|418533278|ref|ZP_13099145.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1026a]
gi|52210648|emb|CAH36632.1| multifunctional riboflavin biosynthetic protein [deaminase,
reductase [Burkholderia pseudomallei K96243]
gi|76579639|gb|ABA49114.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1710b]
gi|126227354|gb|ABN90894.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1106a]
gi|134248295|gb|EBA48378.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
305]
gi|157808908|gb|EDO86078.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
406e]
gi|169652874|gb|EDS85567.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
S13]
gi|225934059|gb|EEH30044.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
Pakistan 9]
gi|242138001|gb|EES24403.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1106b]
gi|254218647|gb|EET08031.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1710a]
gi|385361313|gb|EIF67198.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1026a]
gi|385657936|gb|AFI65359.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1026b]
gi|403075373|gb|AFR16953.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
BPC006]
Length = 378
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/345 (52%), Positives = 245/345 (71%), Gaps = 6/345 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G D+ ++TVY+TLEPCS
Sbjct: 23 TTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDLRDATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC LI + + KV+ A+ DPNP VSG+G+A L AGI V+ GL+ EA+E+NI
Sbjct: 83 HFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVRCGLLAHEAHEMNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + S+WIT +R+D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF----TATDLPMKRKI 248
V +D+P+LNVR + T QP R++IDS L I R+L+GG +F A P +
Sbjct: 203 VREDDPQLNVRGVDTPRQPRRVLIDSRLDIPLAARLLEGGSLLVFCGALDAQSEP-RADA 261
Query: 249 LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYI 308
L G E++ L N GKVDL A++ LG+R INELH+EAG++LN +L+ E CVDELL+Y+
Sbjct: 262 LRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEAGHKLNGSLLRERCVDELLVYL 321
Query: 309 SPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+P L+G +A MF L SL + +L FH ++++G D+RILARF
Sbjct: 322 APSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDLRILARF 366
>gi|167816999|ref|ZP_02448679.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei 91]
Length = 369
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/345 (52%), Positives = 245/345 (71%), Gaps = 6/345 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G D+ ++TVY+TLEPCS
Sbjct: 14 TTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDLRDATVYVTLEPCS 73
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC LI + + KV+ A+ DPNP VSG+G+A L AGI V+ GL+ EA+E+NI
Sbjct: 74 HFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVRCGLLAHEAHEMNI 133
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + S+WIT +R+D H WRAR+CAILTGIGT
Sbjct: 134 GFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKWRARACAILTGIGT 193
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF----TATDLPMKRKI 248
V +D+P+LNVR + T QP R++IDS L I R+L+GG +F A P +
Sbjct: 194 VREDDPQLNVRGVDTPRQPRRVLIDSRLDIPLAARLLEGGSLLVFCGALDAQSEP-RADA 252
Query: 249 LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYI 308
L G E++ L N GKVDL A++ LG+R INELH+EAG++LN +L+ E CVDELL+Y+
Sbjct: 253 LRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEAGHKLNGSLLRERCVDELLVYL 312
Query: 309 SPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+P L+G +A MF L SL + +L FH ++++G D+RILARF
Sbjct: 313 APSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDLRILARF 357
>gi|53725938|ref|YP_103713.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
23344]
gi|67643977|ref|ZP_00442720.1| riboflavin biosynthesis protein RibD [Burkholderia mallei GB8 horse
4]
gi|121598467|ref|YP_992112.1| riboflavin biosynthesis protein RibD [Burkholderia mallei SAVP1]
gi|124385806|ref|YP_001028557.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
10229]
gi|126449378|ref|YP_001081545.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
10247]
gi|166998345|ref|ZP_02264205.1| riboflavin biosynthesis protein RibD [Burkholderia mallei PRL-20]
gi|254175573|ref|ZP_04882233.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
10399]
gi|254202412|ref|ZP_04908775.1| riboflavin biosynthesis protein RibD [Burkholderia mallei FMH]
gi|254207743|ref|ZP_04914093.1| riboflavin biosynthesis protein RibD [Burkholderia mallei JHU]
gi|254356356|ref|ZP_04972632.1| riboflavin biosynthesis protein RibD [Burkholderia mallei
2002721280]
gi|52429361|gb|AAU49954.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
23344]
gi|121227277|gb|ABM49795.1| riboflavin biosynthesis protein RibD [Burkholderia mallei SAVP1]
gi|124293826|gb|ABN03095.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
10229]
gi|126242248|gb|ABO05341.1| riboflavin biosynthesis protein RibD [Burkholderia mallei NCTC
10247]
gi|147746659|gb|EDK53736.1| riboflavin biosynthesis protein RibD [Burkholderia mallei FMH]
gi|147751637|gb|EDK58704.1| riboflavin biosynthesis protein RibD [Burkholderia mallei JHU]
gi|148025353|gb|EDK83507.1| riboflavin biosynthesis protein RibD [Burkholderia mallei
2002721280]
gi|160696617|gb|EDP86587.1| riboflavin biosynthesis protein RibD [Burkholderia mallei ATCC
10399]
gi|238525453|gb|EEP88881.1| riboflavin biosynthesis protein RibD [Burkholderia mallei GB8 horse
4]
gi|243065414|gb|EES47600.1| riboflavin biosynthesis protein RibD [Burkholderia mallei PRL-20]
Length = 380
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/345 (52%), Positives = 245/345 (71%), Gaps = 6/345 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G D+ ++TVY+TLEPCS
Sbjct: 23 TTAPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDLRDATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC LI + + KV+ A+ DPNP VSG+G+A L AGI V+ GL+ EA+E+NI
Sbjct: 83 HFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVRCGLLAHEAHEMNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + S+WIT +R+D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF----TATDLPMKRKI 248
V +D+P+LNVR + T QP R++IDS L I R+L+GG +F A P +
Sbjct: 203 VREDDPQLNVRGVDTPRQPRRVLIDSRLDIPLAARLLEGGSLLVFCGALDAQSEP-RADA 261
Query: 249 LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYI 308
L G E++ L N GKVDL A++ LG+R INELH+EAG++LN +L+ E CVDELL+Y+
Sbjct: 262 LRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEAGHKLNGSLLRERCVDELLVYL 321
Query: 309 SPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+P L+G +A MF L SL + +L FH ++++G D+RILARF
Sbjct: 322 APSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDLRILARF 366
>gi|126440570|ref|YP_001060025.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
668]
gi|167912128|ref|ZP_02499219.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
112]
gi|217420854|ref|ZP_03452359.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
576]
gi|254180983|ref|ZP_04887581.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1655]
gi|254191828|ref|ZP_04898331.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
Pasteur 52237]
gi|418380214|ref|ZP_12966205.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
354a]
gi|418540060|ref|ZP_13105627.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1258a]
gi|418546310|ref|ZP_13111534.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1258b]
gi|418557349|ref|ZP_13121944.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
354e]
gi|126220063|gb|ABN83569.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
668]
gi|157939499|gb|EDO95169.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
Pasteur 52237]
gi|184211522|gb|EDU08565.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1655]
gi|217396266|gb|EEC36283.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
576]
gi|385362897|gb|EIF68690.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1258a]
gi|385364903|gb|EIF70602.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
1258b]
gi|385364991|gb|EIF70688.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
354e]
gi|385377591|gb|EIF82155.1| riboflavin biosynthesis protein RibD [Burkholderia pseudomallei
354a]
Length = 380
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/345 (52%), Positives = 245/345 (71%), Gaps = 6/345 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G D+ ++TVY+TLEPCS
Sbjct: 23 TTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDLRDATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC LI + + KV+ A+ DPNP VSG+G+A L AGI V+ GL+ EA+E+NI
Sbjct: 83 HFGRTPPCAHTLIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVRCGLLAHEAHEMNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + S+WIT +R+D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF----TATDLPMKRKI 248
V +D+P+LNVR + T QP R++IDS L I R+L+GG +F A P +
Sbjct: 203 VREDDPQLNVRGVDTPRQPRRVLIDSRLDIPLAARLLEGGSLLVFCGALDAQSEP-RADA 261
Query: 249 LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYI 308
L G E++ L N GKVDL A++ LG+R INELH+EAG++LN +L+ E CVDELL+Y+
Sbjct: 262 LRARGAEIVPLANARGKVDLPAMLAALGERGINELHVEAGHKLNGSLLRERCVDELLVYL 321
Query: 309 SPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+P L+G +A MF L SL + +L FH ++++G D+RILARF
Sbjct: 322 APSLLGADAAAMFDLAAPASLVDRTRLAFHSVERVGDDLRILARF 366
>gi|330815804|ref|YP_004359509.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia
gladioli BSR3]
gi|327368197|gb|AEA59553.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia
gladioli BSR3]
Length = 372
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 180/344 (52%), Positives = 243/344 (70%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+SPNPRVGCVIVK++ +I GYT+ G +HAE+ A+ +A ++G+D+ +TVY+TLEPCS
Sbjct: 23 TTSPNPRVGCVIVKDEVVIGEGYTQPAGQDHAEVQAMKDARSRGHDLRGATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC LI + + KV+ A+ DPNPLVSGKG+ L AGI V+ GL+ +EA E+NI
Sbjct: 83 HFGRTPPCALGLIDARVAKVVAAMEDPNPLVSGKGLGMLRDAGIEVRCGLLAQEAREMNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A SLD +T+L + SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGQPWVRMKSAISLDGRTALPDGQSQWITGEAARADGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +D+P+L VR I T QP R+++DS L + ++L G IF + L
Sbjct: 203 VREDDPQLTVRGIDTPRQPLRVLVDSRLEVSLEAKLLSGAPILIFCGELDAAGEGRAAAL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
D G EV+ L GKVDL A++ LGKR INELH+EAG++LN +L+ EGCVDELL+Y++
Sbjct: 263 RDRGAEVVPLAGPNGKVDLPALLQALGKRGINELHVEAGHKLNGSLLREGCVDELLIYVA 322
Query: 310 PILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G+ A MF L +L+++ +L+FH I +IG ++RILARF
Sbjct: 323 PTLLGDNAAGMFNLAAPATLEQRTRLQFHTIDRIGDELRILARF 366
>gi|172059887|ref|YP_001807539.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
MC40-6]
gi|171992404|gb|ACB63323.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
MC40-6]
Length = 373
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 184/355 (51%), Positives = 248/355 (69%), Gaps = 7/355 (1%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
+TLA A+ ++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G+DV
Sbjct: 14 LTLA---ARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKDARARGHDVA 70
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
STVY+TLEPCS+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L +GI V+
Sbjct: 71 GSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLRDSGIDVRC 130
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
GL+ EA E+NIGF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WR
Sbjct: 131 GLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAARLDGHAWR 190
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA- 239
AR+CAILTGIGTV +DNP L VR I T QP R+++DS L + R+L+G IF
Sbjct: 191 ARACAILTGIGTVREDNPLLTVRGIDTPRQPQRVLVDSRLDLPLDARLLEGAPLLIFCGR 250
Query: 240 --TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
++ K+L+ G E++ L N GKVDL A++ LG R +NELH+EAG++LN +L+
Sbjct: 251 LDAAGEVRAKVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEAGHKLNGSLLR 310
Query: 298 EGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
E CVDELL+Y++P L+G +A MF L SLD + +L FH +++IG D+RILAR
Sbjct: 311 EQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDARTRLAFHSVERIGDDLRILAR 365
>gi|421867311|ref|ZP_16298970.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Burkholderia cenocepacia H111]
gi|358072725|emb|CCE49848.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Burkholderia cenocepacia H111]
Length = 373
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 182/344 (52%), Positives = 241/344 (70%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A ++GYDV STVY+TLEPCS
Sbjct: 23 TTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDARSRGYDVAGSTVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L AGI V+ GL+ EA E+NI
Sbjct: 83 HFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRCGLLAHEAGELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAARLDGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +DNP L VR I T QP RI++DS L + R+L+G IF ++ +L
Sbjct: 203 VREDNPLLTVRGIDTPRQPQRILVDSRLDLPLDARLLEGAPLLIFCGRLDAAGELRANVL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ G E++ L N GKVDL A++ LG R +NELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 KSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEAGHKLNGSLLRERCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G +A MF L SLD + +L FH I++IG D+RILAR
Sbjct: 323 PSLLGADAAGMFDLAAPASLDARTRLSFHGIERIGDDLRILARI 366
>gi|350545557|ref|ZP_08915029.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase uracil
reductase [Candidatus Burkholderia kirkii UZHbot1]
gi|350526614|emb|CCD39889.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase uracil
reductase [Candidatus Burkholderia kirkii UZHbot1]
Length = 370
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/352 (51%), Positives = 243/352 (69%), Gaps = 2/352 (0%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
TLAL +K ++PNPRVGCV+VK +I G+T+ G +HAE+ AL +A ++G D
Sbjct: 13 TLALA-SKGMYTTTPNPRVGCVLVKNGEVIGMGFTQPAGQDHAEVRALKDARSRGKDPRG 71
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+FG TPPC ALI + ++KVI A+ DPNP VSG+G+ L AGI V+ G
Sbjct: 72 ATAYVTLEPCSHFGRTPPCAHALIDARVEKVIAAMEDPNPAVSGRGLGMLRDAGIDVRCG 131
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L+ EA+E+NIGF SRM R PWVRMKIA++LD +T L SQWIT +++R D H WRA
Sbjct: 132 LLANEAHEMNIGFVSRMTRRRPWVRMKIAATLDGRTGLPTGESQWITGEDARADGHAWRA 191
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF-TAT 240
R+CAILTGIGTV +D+P+L VR++ T QP R++IDS L + R+L G IF +A
Sbjct: 192 RACAILTGIGTVREDDPQLTVRAVDTPRQPQRVLIDSRLDVPMQARILAGAPPWIFHSAG 251
Query: 241 DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
P + L G ++I N GKVDL A++ L R INELH+EAG++LN +L+ EGC
Sbjct: 252 ADPARIDALRGKGADLIERSNEHGKVDLPAMLTALADRGINELHLEAGHKLNGSLLREGC 311
Query: 301 VDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
VDELL+Y++P L+G A MF P +LD + LKFH I ++G D+RILARF
Sbjct: 312 VDELLIYLAPSLLGSAPGMFDFAPPATLDARPHLKFHRIDRLGDDLRILARF 363
>gi|170703035|ref|ZP_02893863.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
IOP40-10]
gi|170132059|gb|EDT00559.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria
IOP40-10]
Length = 373
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/355 (51%), Positives = 247/355 (69%), Gaps = 7/355 (1%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
+TLA A+ ++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G+DV
Sbjct: 14 LTLA---ARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKDARARGHDVA 70
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
STVY+TLEPCS+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L AGI V+
Sbjct: 71 GSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRC 130
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
GL+ EA E+NIGF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WR
Sbjct: 131 GLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAARLDGHAWR 190
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA- 239
AR+CAILTGIGTV +DNP L VR I T QP R+++DS L + R+L+G IF
Sbjct: 191 ARACAILTGIGTVREDNPLLTVRGIDTPRQPQRVLVDSRLDLPLDARLLEGAPLLIFCGR 250
Query: 240 --TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
++ +L+ G E++ L N GKVDL A++ LG R +NELH+EAG++LN +L+
Sbjct: 251 LDASGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEAGHKLNGSLLR 310
Query: 298 EGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
E CVDELL+Y++P L+G +A MF L SLD + +L FH +++IG D+RILAR
Sbjct: 311 EQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDARTRLAFHSVERIGDDLRILAR 365
>gi|167563753|ref|ZP_02356669.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
EO147]
Length = 369
Score = 376 bits (965), Expect = e-101, Method: Compositional matrix adjust.
Identities = 178/344 (51%), Positives = 243/344 (70%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIV+ +I G+T+ G +HAE+ AL +A +G D+ ++TVY+TLEPCS
Sbjct: 14 TTTPNPRVGCVIVQNDVVIGEGFTQPAGQDHAEVQALKDARTRGGDLRDATVYVTLEPCS 73
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+A L AGI V+ GL+ EA+E+NI
Sbjct: 74 HFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVRCGLLTHEAHEMNI 133
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + S+WIT +R+D H WRAR+CAILTGIGT
Sbjct: 134 GFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKWRARACAILTGIGT 193
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPM---KRKIL 249
V +D+P+LNVR + T QP R++IDS L I R+L+GG IF P + L
Sbjct: 194 VREDDPQLNVRGVDTPRQPRRVLIDSRLDIPLSARLLEGGSLLIFCGALDPQSEARADAL 253
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
G E++ L N GKVDL A++ LG+R INELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 254 RARGAEIVPLANARGKVDLPAMLAMLGERGINELHVEAGHKLNGSLLRERCVDELLVYLA 313
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G +A MF + SL + +L FH ++++G D+RILARF
Sbjct: 314 PSLLGADAAAMFEVAAPASLADRTRLAFHSVERVGDDLRILARF 357
>gi|206561395|ref|YP_002232160.1| multifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Burkholderia cenocepacia J2315]
gi|444358905|ref|ZP_21160275.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia BC7]
gi|444372253|ref|ZP_21171736.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
K56-2Valvano]
gi|198037437|emb|CAR53372.1| multifunctional riboflavin biosynthetic protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Burkholderia cenocepacia J2315]
gi|443593882|gb|ELT62585.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
K56-2Valvano]
gi|443603043|gb|ELT71073.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia BC7]
Length = 373
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 182/344 (52%), Positives = 241/344 (70%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A ++GYDV STVY+TLEPCS
Sbjct: 23 TTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDARSRGYDVAGSTVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L AGI V+ GL+ EA E+NI
Sbjct: 83 HFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRCGLLAHEAGELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAARLDGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +DNP L VR I T QP RI++DS L + R+L+G IF ++ +L
Sbjct: 203 VREDNPLLTVRGIDTPRQPQRILVDSRLDLPLDARLLEGAPLLIFCGRLDAAGEVRANVL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ G E++ L N GKVDL A++ LG R +NELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 KSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEAGHKLNGSLLRERCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G +A MF L SLD + +L FH I++IG D+RILAR
Sbjct: 323 PSLLGADAAGMFDLAAPASLDARTRLSFHGIERIGDDLRILARI 366
>gi|171315490|ref|ZP_02904726.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MEX-5]
gi|171099327|gb|EDT44065.1| riboflavin biosynthesis protein RibD [Burkholderia ambifaria MEX-5]
Length = 373
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/355 (51%), Positives = 246/355 (69%), Gaps = 7/355 (1%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
+TLA A+ ++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL NA +G+DV
Sbjct: 14 LTLA---ARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKNARTRGHDVA 70
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
STVY+TLEPCS+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L AGI V+
Sbjct: 71 GSTVYVTLEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRC 130
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
GL+ EA E+NIGF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WR
Sbjct: 131 GLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAARLDGHAWR 190
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA- 239
AR+CAILTGIGTV +DNP L VR I T QP R+++DS L + R+L+G IF
Sbjct: 191 ARACAILTGIGTVREDNPLLTVRGIDTPRQPQRVLVDSRLDLPLDARLLEGAPLLIFCGR 250
Query: 240 --TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
++ +L+ G E++ L N GKVDL A++ LG R +NELH+EAG++LN +L+
Sbjct: 251 LDAAGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEAGHKLNGSLLR 310
Query: 298 EGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
E CVDELL+Y++P L+G +A MF L SLD + +L FH +++IG D+RILAR
Sbjct: 311 EQCVDELLVYLAPSLLGSDAAGMFDLAAPASLDARTRLAFHSVERIGDDLRILAR 365
>gi|402567320|ref|YP_006616665.1| riboflavin biosynthesis protein RibD [Burkholderia cepacia GG4]
gi|402248517|gb|AFQ48971.1| riboflavin biosynthesis protein RibD [Burkholderia cepacia GG4]
Length = 373
Score = 375 bits (963), Expect = e-101, Method: Compositional matrix adjust.
Identities = 184/356 (51%), Positives = 248/356 (69%), Gaps = 7/356 (1%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
+TLA A+ ++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G+DV
Sbjct: 14 LTLA---ARGMYTTAPNPRVGCVIVKDGNVIGEGFTQPAGQDHAEVQALKDARARGHDVA 70
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
STVY+TLEPCS+FG TPPC ALI++ + KV+ A+ DPNP VSG+G+ L AGI V+
Sbjct: 71 GSTVYVTLEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRC 130
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
GL+ EA E+NIGF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WR
Sbjct: 131 GLLANEAGELNIGFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAARLDGHAWR 190
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA- 239
AR+CAILTGIGTV +DNP L VR I T QP R++IDS L + R+L+G IF
Sbjct: 191 ARACAILTGIGTVREDNPLLTVRGIDTPRQPQRVLIDSRLDLPLDARLLEGAPLLIFCGR 250
Query: 240 --TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
++ +L+ G E++ L N GKVDL A++ LG R +NELH+EAG++LN +L+
Sbjct: 251 LDAGGEVRANVLKSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEAGHKLNGSLLR 310
Query: 298 EGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
E CVDELL+Y++P L+G +A MF L SL+ + +L FH +++IG D+RILAR
Sbjct: 311 EQCVDELLVYLAPSLLGSDAAGMFDLAAPASLEARTRLAFHSVERIGDDLRILARL 366
>gi|71906245|ref|YP_283832.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Dechloromonas
aromatica RCB]
gi|71845866|gb|AAZ45362.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Dechloromonas aromatica RCB]
Length = 367
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/354 (51%), Positives = 250/354 (70%), Gaps = 5/354 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + +SPNPRVGCV+V++ I+ G+ + G HAE+ AL +A G
Sbjct: 11 MARALQLAERGLWTTSPNPRVGCVLVRDGEIVGEGWHEKAGEPHAEVHALRSA---GERA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+ +V+ A+ DPNPLVSGKG+A L +AGI
Sbjct: 68 KGTTAYVTLEPCSHHGRTPPCAEALIAAGVSRVVAAMTDPNPLVSGKGLALLRAAGIETA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA E+NIGF SRM RG PW+R+K+A+SLD KT+L N SQWIT ++R D H W
Sbjct: 128 SGLLENEARELNIGFVSRMTRGRPWLRLKVAASLDGKTALNNGVSQWITGPDARRDGHAW 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAILTGIGTV D+P+L+VR + T+ QP R+V+DS L R+L+GG I A
Sbjct: 188 RARACAILTGIGTVRDDDPQLSVRDVATTRQPLRVVVDSKLETPVNARILQGGPVLIAGA 247
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
+ + + L LG +V++LPN GKVDL A+++ LG+R INE+H EAG++LN +L+ EG
Sbjct: 248 VENNARIESLRSLGADVLILPNPSGKVDLIALLVALGQRGINEVHAEAGFKLNGSLLREG 307
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
VDELLLY++P LIG +A +F LP +LD K +L+ +++++G DIR+LAR
Sbjct: 308 LVDELLLYLAPCLIGHQASGLFNLPELTTLDGKQRLQIRDLRQVGADIRVLARL 361
>gi|254253006|ref|ZP_04946324.1| Pyrimidine reductase [Burkholderia dolosa AUO158]
gi|124895615|gb|EAY69495.1| Pyrimidine reductase [Burkholderia dolosa AUO158]
Length = 373
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/344 (52%), Positives = 239/344 (69%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G+DV +TVY+TLEPCS
Sbjct: 23 TTAPNPRVGCVIVKDGSVIGEGFTQPAGQDHAEVQALKDARARGHDVAGATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L AGI V+ GL+ EA E+NI
Sbjct: 83 HFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLTMLRDAGIDVRCGLLAHEAGELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAARADGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +DNP L VR I T QP R++IDS L + R+L+G IF + L
Sbjct: 203 VREDNPLLTVRGIDTPRQPQRVLIDSRLELPLDARLLEGAPLLIFCGRLDAGSEARANAL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
E G E++ L N GKVDL A++ LG R INELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 EARGAEIVSLANAHGKVDLPAMLSALGARGINELHVEAGHKLNGSLLREQCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G +A MF + +LD + +L FH +++IG D+RILAR
Sbjct: 323 PSLLGADAAGMFDVAAPANLDARTRLAFHSVERIGDDLRILARI 366
>gi|170732274|ref|YP_001764221.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
MC0-3]
gi|169815516|gb|ACA90099.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
MC0-3]
Length = 373
Score = 374 bits (961), Expect = e-101, Method: Compositional matrix adjust.
Identities = 181/343 (52%), Positives = 241/343 (70%), Gaps = 4/343 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A ++GYDV STVY+TLEPCS
Sbjct: 23 TTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDARSRGYDVAGSTVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L AGI V+ GL+ EA E+NI
Sbjct: 83 HFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRCGLLAHEAGELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAARLDGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +DNP L VR I T QP RI++DS L + R+L+G IF ++ +L
Sbjct: 203 VREDNPLLTVRGIDTPRQPQRILVDSRLDLPLDARLLEGAPLLIFCGRLDAAGELRANVL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ G E++ L N GKVDL A++ LG R +NELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 KSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEAGHKLNGSLLRERCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
P L+G +A MF L SL+ + +L FH I++IG D+RILAR
Sbjct: 323 PSLLGADAAGMFDLAAPASLEARTRLSFHGIERIGDDLRILAR 365
>gi|254246078|ref|ZP_04939399.1| Pyrimidine reductase [Burkholderia cenocepacia PC184]
gi|124870854|gb|EAY62570.1| Pyrimidine reductase [Burkholderia cenocepacia PC184]
Length = 373
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/343 (52%), Positives = 241/343 (70%), Gaps = 4/343 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A ++GYDV STVY+TLEPCS
Sbjct: 23 TTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDARSRGYDVAGSTVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L AGI V+ GL+ EA E+NI
Sbjct: 83 HFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRCGLLANEAGELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAARLDGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +DNP L VR I T QP RI++DS L + R+L+G IF ++ +L
Sbjct: 203 VREDNPLLTVRGIDTPRQPQRILVDSRLDLPLDARLLEGAPLLIFCGRLDAAGELRANVL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ G E++ L N GKVDL A++ LG R +NELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 KSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEAGHKLNGSLLREHCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
P L+G +A MF L SL+ + +L FH I+++G D+RILAR
Sbjct: 323 PSLLGADAAGMFDLAAPASLEARTRLSFHGIERVGDDLRILAR 365
>gi|107022039|ref|YP_620366.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia AU
1054]
gi|116688983|ref|YP_834606.1| riboflavin biosynthesis protein RibD [Burkholderia cenocepacia
HI2424]
gi|105892228|gb|ABF75393.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Burkholderia
cenocepacia AU 1054]
gi|116647072|gb|ABK07713.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Burkholderia cenocepacia HI2424]
Length = 373
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 180/343 (52%), Positives = 241/343 (70%), Gaps = 4/343 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A ++GYDV STVY+TLEPCS
Sbjct: 23 TTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDARSRGYDVAGSTVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L AGI V+ GL+ EA E+NI
Sbjct: 83 HFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRCGLLAHEAGELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGEAARLDGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +DNP L VR I T QP RI++DS L + R+L+G IF ++ +L
Sbjct: 203 VREDNPLLTVRGIDTPRQPQRILVDSRLDLPLDARLLEGAPLLIFCGRLDAAGELRANVL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ G E++ L N GKVDL A++ LG R +NELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 KSRGAEIVPLANAHGKVDLPAMLAALGARGVNELHVEAGHKLNGSLLRERCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
P L+G +A MF L SL+ + +L FH I+++G D+RILAR
Sbjct: 323 PSLLGADAAGMFDLAAPASLEARTRLSFHGIERVGDDLRILAR 365
>gi|56475984|ref|YP_157573.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase oxidoreductase [Aromatoleum aromaticum EbN1]
gi|56312027|emb|CAI06672.1| riboflavin biosynthesis bifunctional RIBD:
diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
oxidoreductase protein [Aromatoleum aromaticum EbN1]
Length = 366
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 177/353 (50%), Positives = 250/353 (70%), Gaps = 5/353 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + ++PNPRVGCV++KE I+ G+ + G HAE+ AL A G
Sbjct: 11 MARALQLAERGLETTTPNPRVGCVLMKEGSIVGEGWHRRAGEPHAEVIAL---RAAGDTA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G TPPC +ALI +G+ +V+ A+ DPNPLV+G GV +L +AG++V
Sbjct: 68 RGATAYVTLEPCTHHGRTPPCADALIAAGVTRVVAAMEDPNPLVAGTGVGRLRAAGLAVT 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ +A+E+NIGF SRM RG PWVR+K AS+LD KT+L N SQWIT+ +R D H W
Sbjct: 128 TGLLASDAHELNIGFVSRMTRGRPWVRLKTASTLDGKTALNNGVSQWITADAARRDGHRW 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CA+LTGIGTV +D+P+L VR++ QP R+++D+ L I ++L+GGG I TA
Sbjct: 188 RARACAVLTGIGTVREDDPQLTVRAVPCERQPLRVLVDARLDIPLSAKLLQGGGCLIATA 247
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
+ K L LG EV+VLPN GKVDL +++ ELG R INE+H+EAG +LN +L+ E
Sbjct: 248 IEDCEKSAALAALGAEVVVLPNGRGKVDLPSLMRELGDRGINEVHVEAGLKLNGSLLREN 307
Query: 300 CVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
CVDELLLY++P+L+G+ A +F LP LD+ I+L++ +++ IG D+R+LAR
Sbjct: 308 CVDELLLYVAPMLVGDAAQGLFNLPELVQLDRAIRLQWRDVRFIGGDLRVLAR 360
>gi|238026457|ref|YP_002910688.1| pyrimidine reductase, riboflavin biosynthesis [Burkholderia glumae
BGR1]
gi|237875651|gb|ACR27984.1| Pyrimidine reductase, riboflavin biosynthesis [Burkholderia glumae
BGR1]
Length = 372
Score = 372 bits (956), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/344 (51%), Positives = 243/344 (70%), Gaps = 4/344 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I GYT+ G +HAE+ A+ +A ++G+D+ +TVY+TLEPCS
Sbjct: 23 TTTPNPRVGCVIVKDGVVIGEGYTQPAGQDHAEVQAMKDARSRGHDLRGATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC + LI + + +VI A+ DPNP VSG+G+A L AGI V+ GL+ +EA+E+NI
Sbjct: 83 HFGRTPPCAQGLIDARVARVIAAMEDPNPAVSGRGLAMLRDAGIEVRCGLLAQEAHEMNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PW+RMKIA+SLD +T+L SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWLRMKIAASLDGRTALPTGESQWITGEAARRDGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
VL+D+PRL VR I T QP R+++DS L + ++L G +F + L
Sbjct: 203 VLEDDPRLTVRDIDTPRQPLRVLVDSRLDLPLDAKLLAGAPILVFCGRLDAASEARAAAL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
D G EVI L + GKVDL A++ LG+ INELH+EAG++LN +L+ EGCVDELL+Y++
Sbjct: 263 RDRGAEVIPLADANGKVDLPAMLAALGRHGINELHVEAGHKLNGSLLREGCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G EA MF + +L ++ L++H I +IG D+R+LAR
Sbjct: 323 PTLLGPEAAGMFNIATPPTLAQRTVLQYHSIDRIGDDLRVLARL 366
>gi|221068623|ref|ZP_03544728.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni KF-1]
gi|220713646|gb|EED69014.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni KF-1]
Length = 367
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/355 (53%), Positives = 245/355 (69%), Gaps = 4/355 (1%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M AL+QA ++ SSPNPRVGCVIV RII G+T+ GG HAE+ AL +AAA+G D
Sbjct: 6 MNKALEQAAQALFLSSPNPRVGCVIVDASDRIIGQGFTQQAGGPHAEVMALRDAAAKGND 65
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
V +T Y+TLEPCS+ G T PC +ALI +GI KV+ A+ DPNP V+G+G +L +AG+ V
Sbjct: 66 VRGATAYVTLEPCSHHGRTGPCCDALIAAGIAKVVGALTDPNPQVAGQGFERLRAAGVDV 125
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ G E+ E+NIGFFSRM RG PWVRMK ASSLD T+L+N SQWITS +R D H
Sbjct: 126 EIGPGAAESRELNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADGHA 185
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IF 237
WRAR+C ILTGIGTVL+DNPRLNVR T QP V+DS L I P VLK C I+
Sbjct: 186 WRARACTILTGIGTVLEDNPRLNVRDQPTPRQPRIAVVDSKLDIPPDAHVLKAPSGCFIY 245
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
T + K + L LG VI +PN GKVDL A++ +L +R NELH+EAG++LN +LI
Sbjct: 246 TCSINQSKIEKLRALGATVIAMPNAAGKVDLAALLRDLAQRGTNELHVEAGFKLNGSLIR 305
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDELL Y +P L+G A + P SL++ + L+FH++ ++GPD+RI+AR
Sbjct: 306 EGLVDELLFYQAPKLLGTGAMGIANFGPLDSLEQGLPLEFHDVARMGPDLRIVAR 360
>gi|312797040|ref|YP_004029962.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Burkholderia rhizoxinica HKI 454]
gi|312168815|emb|CBW75818.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)
/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC
1.1.1.193) [Burkholderia rhizoxinica HKI 454]
Length = 382
Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust.
Identities = 178/343 (51%), Positives = 240/343 (69%), Gaps = 3/343 (0%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+SPNPRVGCV+VK+ +I G+T+ G +HAEI AL +A +G+ +T Y+TLEPCS
Sbjct: 23 TTSPNPRVGCVLVKDGEVIGEGFTQPAGQDHAEICALKDARLRGHTPAGATAYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC LI++GI +VI A+ DPNP VSG+G+A L AG+ V+ GL+ EA E+N+
Sbjct: 83 HFGRTPPCANTLIEAGITRVIAAMEDPNPQVSGRGLASLRDAGVDVRCGLLAHEAQELNV 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG+PWVR+KIA++LD +T+L N SQWITS +R D H WRAR+CA LTGIGT
Sbjct: 143 GFVSRMTRGVPWVRLKIAATLDGRTALPNGQSQWITSSAARTDGHAWRARACATLTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS---CIFTATDLPMKRKIL 249
V +D+P++ VR++ T QP R+++DS L + R+L G C + L
Sbjct: 203 VREDDPQMTVRAVSTPRQPLRVLVDSCLDVPLDARILTGAPPLVICARDDAAFAARAHAL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
G EVI LPN GKVDL A + L R INELH+EAGY+LN +L+ EGCVDELLLYI+
Sbjct: 263 RAAGAEVIALPNQSGKVDLPAALRLLAARGINELHVEAGYKLNGSLLREGCVDELLLYIA 322
Query: 310 PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G A MF L P +LD++++L++H I++IG D+R+LAR
Sbjct: 323 PALLGNATGMFNLEPPPTLDQRVRLQYHSIERIGEDLRVLARL 365
>gi|264677184|ref|YP_003277090.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni CNB-2]
gi|262207696|gb|ACY31794.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni CNB-2]
Length = 369
Score = 369 bits (948), Expect = e-99, Method: Compositional matrix adjust.
Identities = 189/355 (53%), Positives = 246/355 (69%), Gaps = 4/355 (1%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M AL+QA ++ SSPNPRVGCVIV +RII G+T+ GG HAE+ AL +AAA+G D
Sbjct: 8 MNKALEQAAQALFLSSPNPRVGCVIVDASERIIGQGFTQQTGGPHAEVMALRDAAAKGND 67
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
V +T Y+TLEPCS+ G T PC +ALI +GI KV+ A+ DPNP V+G+G +L +AG+ V
Sbjct: 68 VRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGFERLRAAGVDV 127
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ G E+ E+NIGFFSRM RGIPWVRMK ASSLD T+L+N SQWITS +R D H
Sbjct: 128 EIGPGGAESRELNIGFFSRMIRGIPWVRMKAASSLDGITALHNGQSQWITSAAARADGHA 187
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IF 237
WRAR+C ILTGIGTVL+DNPR+NVR + T QP V+DS L I VLK C I+
Sbjct: 188 WRARACTILTGIGTVLEDNPRMNVRDVDTPRQPRIAVVDSKLDIPLDAHVLKAPSGCLIY 247
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
T + + + L+ LG VI +PN GKVDL A++ +L +R NELH+EAG++LN +LI
Sbjct: 248 TCSTKQSRIEALQALGATVIDMPNAAGKVDLAAMLRDLAQRGTNELHVEAGFKLNGSLIR 307
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDELL Y +P L+G A + P LD+ + L FH++ ++GPD+RI+AR
Sbjct: 308 EGLVDELLFYQAPKLLGTGAMGIANFGPLDRLDQGLPLVFHDVARLGPDLRIVAR 362
>gi|134294988|ref|YP_001118723.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Burkholderia vietnamiensis G4]
gi|134138145|gb|ABO53888.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Burkholderia vietnamiensis G4]
Length = 373
Score = 369 bits (947), Expect = 1e-99, Method: Compositional matrix adjust.
Identities = 177/343 (51%), Positives = 239/343 (69%), Gaps = 4/343 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G DV +TVY+TLEPCS
Sbjct: 23 TTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDARARGCDVAGATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L AGI V+ GL+ EA E+NI
Sbjct: 83 HFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRCGLLAYEAGELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAARLDGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +DNP L VR I T QP R+++DS L + R+L+G IF ++ +L
Sbjct: 203 VREDNPLLTVRGIDTPRQPQRVLVDSRLDLPLDARLLEGAPLLIFCGRLDAAGEIRANVL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ G EV+ L N GKVDL ++ LG R +NELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 QSRGAEVVSLANMQGKVDLPGMLAALGARGVNELHVEAGHKLNGSLLREQCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
P L+G +A MF L SLD + +L FH ++++G D+RI+AR
Sbjct: 323 PSLLGSDAAAMFDLAAPTSLDGRTRLAFHSVERVGDDLRIVAR 365
>gi|387901607|ref|YP_006331946.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Burkholderia sp. KJ006]
gi|387576499|gb|AFJ85215.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Burkholderia sp. KJ006]
Length = 373
Score = 369 bits (946), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 177/343 (51%), Positives = 239/343 (69%), Gaps = 4/343 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G DV +TVY+TLEPCS
Sbjct: 23 TTAPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDARARGCDVAGATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L AGI V+ GL+ EA E+NI
Sbjct: 83 HFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRCGLLAYEAGELNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + SQWIT + +R D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDARTALPSGESQWITGEAARLDGHAWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +DNP L VR I T QP R+++DS L + R+L+G IF ++ +L
Sbjct: 203 VREDNPLLTVRGIDTPRQPQRVLVDSRLDLPLDARLLEGAPLLIFCGRLDAAGEIRANVL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ G EV+ L N GKVDL ++ LG R +NELH+EAG++LN +L+ E CVDELL+Y++
Sbjct: 263 QSRGAEVVSLANLQGKVDLPGMLAALGARGVNELHVEAGHKLNGSLLREQCVDELLVYLA 322
Query: 310 PILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
P L+G +A MF L SLD + +L FH ++++G D+RI+AR
Sbjct: 323 PSLLGSDAAAMFDLAAPTSLDGRTRLAFHSVERVGDDLRIVAR 365
>gi|237747123|ref|ZP_04577603.1| riboflavin biosynthesis protein RibD [Oxalobacter formigenes
HOxBLS]
gi|229378474|gb|EEO28565.1| riboflavin biosynthesis protein RibD [Oxalobacter formigenes
HOxBLS]
Length = 374
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 182/353 (51%), Positives = 245/353 (69%), Gaps = 1/353 (0%)
Query: 1 MTLALQQAK-LSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ S+ SPNP+VGCVIV+ I+ GYT+ G NHAEI+AL A ++G D
Sbjct: 20 MKRALELARNCSVLVSPNPKVGCVIVRNGHILGEGYTRPAGKNHAEIEALNEAVSRGEDC 79
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPC++FG TPPC +AL+++G+ +VI A+ DPNPLV+GKG+ +L +AGI V
Sbjct: 80 RGATVYVTLEPCAHFGRTPPCADALVRAGVSRVIAAMEDPNPLVAGKGLEKLKAAGIHVI 139
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ EA E+N GF SR++RG PWVRMK+A+SLD KT+L N SQWITS+++R D H W
Sbjct: 140 CGILADEAREMNRGFLSRVERGRPWVRMKVAASLDGKTALSNGESQWITSEKAREDGHRW 199
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
R R+ AI+TGIGTV++DNPRLNVR QP RIV+DS L+ RVL+ G + IF+A
Sbjct: 200 RMRADAIMTGIGTVIQDNPRLNVRLPDAVRQPVRIVVDSQLKTPLDARVLEEGKTWIFSA 259
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P K +++ G V NN G+VDL ++ L K++INE+H+EAG LN AL+ E
Sbjct: 260 NASPYKIGAMQEKGVRVFSTINNTGRVDLAEMMETLAKQEINEIHVEAGATLNGALMQES 319
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
VDE+L+Y++P +G NM +L L KI L FHEI IG DIRI+AR
Sbjct: 320 LVDEMLIYLAPCFLGSGKNMLSLNHIDRLADKIALDFHEIVPIGDDIRIVARL 372
>gi|299530728|ref|ZP_07044143.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni S44]
gi|298721244|gb|EFI62186.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni S44]
Length = 362
Score = 368 bits (945), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 188/355 (52%), Positives = 244/355 (68%), Gaps = 4/355 (1%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M AL+QA ++ SSPNPRVGCVIV RII G+T+ GG HAE+ AL +A+A+G D
Sbjct: 1 MNKALEQAAQALFLSSPNPRVGCVIVDASDRIIGQGFTQQAGGPHAEVMALRDASAKGND 60
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
V +T Y+TLEPCS+ G T PC +ALI +GI KV+ A+ DPNP V+G+G +L +AG+ V
Sbjct: 61 VRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGFERLRAAGVDV 120
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ G E+ E+NIGFFSRM RG PWVRMK ASSLD T+L+N SQWITS +R D H
Sbjct: 121 EIGPGGAESRELNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADGHA 180
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IF 237
WRAR+C ILTGIGTVL+DNPR+NVR + T QP V+DS L I VLK C I+
Sbjct: 181 WRARACTILTGIGTVLEDNPRMNVRDVDTPRQPRIAVVDSKLDIPLDAHVLKAPSGCLIY 240
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
T + + + L+ LG VI +PN GKVDL A++ +L R NELH+EAG++LN +LI
Sbjct: 241 TCSTKQSRIEELQALGATVIAMPNAAGKVDLAAMLRDLAARGTNELHVEAGFKLNGSLIR 300
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDELL Y +P L+G A + P SLD+ + L FH++ ++GPD+RI+AR
Sbjct: 301 EGLVDELLFYQAPKLLGTGAMGIANFGPLDSLDQGLPLVFHDVARLGPDLRIVAR 355
>gi|418530564|ref|ZP_13096487.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni ATCC
11996]
gi|371452283|gb|EHN65312.1| riboflavin biosynthesis protein RibD [Comamonas testosteroni ATCC
11996]
Length = 369
Score = 368 bits (944), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 190/355 (53%), Positives = 245/355 (69%), Gaps = 4/355 (1%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M AL+QA ++ SSPNPRVGCVIV +RII G+T+ GG HAE+ AL +AAA+G D
Sbjct: 8 MNKALEQAAQALFLSSPNPRVGCVIVDASERIIGQGFTQQAGGPHAEVMALRDAAAKGND 67
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
V +T Y+TLEPCS+ G T PC +ALI +GI KV+ A+ DPNP V+G+G +L +AG++V
Sbjct: 68 VRGATAYVTLEPCSHHGRTGPCCDALIAAGIGKVVGALTDPNPQVAGQGFERLRAAGVNV 127
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ G E+ E NIGFFSRM RG PWVRMK ASSLD T+L+N SQWITS +R D H
Sbjct: 128 EIGPGGTESREFNIGFFSRMIRGTPWVRMKAASSLDGVTALHNGQSQWITSAAARADGHA 187
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IF 237
WRAR+C ILTGIGTVL+DNPRLNVR + T QP V+DS L I VLK C I+
Sbjct: 188 WRARACTILTGIGTVLEDNPRLNVRDVDTPRQPRIAVVDSKLDIPLDAHVLKAPSGCLIY 247
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
T + K + L+ LG VI +PN GKVDL A++ +L +R NELH+EAG++LN +LI
Sbjct: 248 TYSTNQSKIEQLQALGATVIDMPNAAGKVDLAAMLRDLAQRGTNELHVEAGFKLNGSLIR 307
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE L Y +P L+G A + P SLD+ + L FH++ ++GPD+RI+AR
Sbjct: 308 EGLVDEFLFYQAPKLLGTGAMGIANFGPLDSLDQGLPLVFHDVARLGPDLRIVAR 362
>gi|121605806|ref|YP_983135.1| riboflavin biosynthesis protein RibD [Polaromonas naphthalenivorans
CJ2]
gi|120594775|gb|ABM38214.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polaromonas
naphthalenivorans CJ2]
Length = 370
Score = 365 bits (936), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 180/352 (51%), Positives = 242/352 (68%), Gaps = 4/352 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
+AL A + I +SPNPRVGCV+ ++ G+T++ G HAEI AL +AAAQG+ V
Sbjct: 14 AVALALAAMRI-TSPNPRVGCVLTSSGDVLGQGHTQAAGHPHAEIMALRDAAAQGHSVVG 72
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+ G T PC +ALI +GIKK++ +I DPNPLVSG+G +L +AGI V+ G
Sbjct: 73 ATAYVTLEPCSHHGRTGPCCDALIAAGIKKIVASIADPNPLVSGQGFERLRAAGIEVEVG 132
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
E+ E+NIGFFSRM R PWVRMK+A+SLD T+L N SQWITS E+R D H WRA
Sbjct: 133 PGAAESRELNIGFFSRMIRKTPWVRMKMAASLDGTTALANGQSQWITSAEARADGHAWRA 192
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLR--IDPFFRVLKGGGSCIFTA 239
R+CA+LTGIGTVL+DNPRL+VR + T QP+ IV+DS L +D + G I+ A
Sbjct: 193 RACAVLTGIGTVLQDNPRLDVRLVSTPRQPHLIVVDSRLETPLDAHL-FIAGRALYIYAA 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
K++ LE G VI LP+ GKVDL A++ +LG+R+INELH+EAG +LN +LI G
Sbjct: 252 VQNEAKKQALEAKGATVIYLPDANGKVDLTAMVQDLGRREINELHVEAGSKLNGSLIRAG 311
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDE LLY++P L+G M + P +L ++L+F ++G D+RI+AR
Sbjct: 312 LVDEFLLYLAPKLLGPGQGMASFGPLQALSDAVELQFQSTDRVGADLRIVAR 363
>gi|237749273|ref|ZP_04579753.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oxalobacter
formigenes OXCC13]
gi|229380635|gb|EEO30726.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Oxalobacter
formigenes OXCC13]
Length = 363
Score = 364 bits (934), Expect = 4e-98, Method: Compositional matrix adjust.
Identities = 183/354 (51%), Positives = 248/354 (70%), Gaps = 2/354 (0%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K S+ +SPNPRVGCVIV++ II G+T+ GGNHAE++AL + A +G D
Sbjct: 8 MRRALELARKCSVLTSPNPRVGCVIVRDGEIIGEGFTQPVGGNHAEVEALNDVAKRGQDC 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +ALI++ +K+V+ AI DPN V+GKG+A+L +AGI V
Sbjct: 68 RGATVYVTLEPCSHRGRTPPCADALIRANVKRVVAAIEDPNVQVAGKGLAKLKAAGIEVL 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ EA E+N GF SR + G PWVRMK+A+SLD KT+L N SQWITS+ +R D H W
Sbjct: 128 CGVLPDEARELNRGFLSRFEHGRPWVRMKVAASLDGKTALTNGESQWITSEAARRDGHEW 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG-SCIFT 238
R R+ AI+TGIGTV+KDNPRLNVR T QP RIV+DS L+ RVL+ GG + IF+
Sbjct: 188 RMRADAIMTGIGTVIKDNPRLNVRLPDTIRQPKRIVVDSQLKTPIDARVLENGGDTWIFS 247
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
A P K + +++ G +V N+ G+VDL ++ L +++INE+H+EAG LN ALI
Sbjct: 248 ANASPYKIEAMQEKGVQVFSAINDTGRVDLADMMKVLAEKEINEVHVEAGATLNGALIQA 307
Query: 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
G VDE+L+Y++P +G NM +L +L KI +FHEI+ I DIRI+AR
Sbjct: 308 GFVDEMLIYLAPCFLGSGKNMVSLNDIANLADKISFEFHEIRTIENDIRIIARL 361
>gi|398805988|ref|ZP_10564942.1| riboflavin biosynthesis protein RibD [Polaromonas sp. CF318]
gi|398090057|gb|EJL80549.1| riboflavin biosynthesis protein RibD [Polaromonas sp. CF318]
Length = 374
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 167/342 (48%), Positives = 235/342 (68%), Gaps = 2/342 (0%)
Query: 12 INSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEP 70
++SPNPR+GCV++ + I GYT+ GG HAE+ AL +AAA G+ + +T Y+TLEP
Sbjct: 26 FSASPNPRIGCVLISAAGQTIGTGYTQQAGGPHAEVMALRDAAAHGHATHGATAYVTLEP 85
Query: 71 CSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEI 130
CS+ G T PC +AL+ +GI+KV+ ++ DPNPLVSG+G +L +AG+ V G EA E+
Sbjct: 86 CSHHGRTGPCCDALVAAGIRKVVASMADPNPLVSGQGFERLRAAGVEVDVGAGAAEAREL 145
Query: 131 NIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGI 190
NIGFFSRM R PWVRMKIA+SLD T+L N SQWITS E+R D H WRAR+ A+LTGI
Sbjct: 146 NIGFFSRMVRKTPWVRMKIAASLDGATALANGQSQWITSPEARADGHAWRARAGAVLTGI 205
Query: 191 GTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKIL 249
GTVL+DNPRL+VR + T QP+R+++DS L+ ++ + GG I+TA + L
Sbjct: 206 GTVLQDNPRLDVRLVDTPRQPFRVIVDSLLQTPVDAKIFEAGGPVWIYTAVQDASREAAL 265
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
G V LP+ GKVDL A++ +L +R+IN+LH+EAG +LN +L+ E VDE L+Y++
Sbjct: 266 TAKGATVTCLPDARGKVDLAAMMKDLARREINDLHVEAGSKLNGSLVREELVDEFLVYLA 325
Query: 310 PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
P L+G M + P L + L+F ++++GPD+R+LAR
Sbjct: 326 PKLLGPGMGMASFGPLEQLSDAMDLQFQSVERVGPDLRVLAR 367
>gi|347819504|ref|ZP_08872938.1| riboflavin biosynthesis protein RibD [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 367
Score = 361 bits (927), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 172/343 (50%), Positives = 237/343 (69%), Gaps = 4/343 (1%)
Query: 13 NSSPNPRVGCVIVKEKRII-SCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNPRVGCVI ++ G T+ GG HAEI AL NAA G+ V +T Y+TLEPC
Sbjct: 20 RTSPNPRVGCVIADSGGLVLGRGSTQRAGGAHAEIMALRNAAECGHCVVGATAYVTLEPC 79
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
++ G T PC +AL+ +GI +V+ +I DPNPLV+G+G A+L +AG+ V+ G + A +N
Sbjct: 80 AHHGRTGPCCDALVDAGIARVVASIADPNPLVAGQGFARLRAAGVLVEVGSGAQAARALN 139
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
+GFFSRM R PWVRMK+A+SLD T+L++ SQW+T +R D H WRAR+CA+LTGIG
Sbjct: 140 MGFFSRMLRKTPWVRMKVAASLDGVTALHSGVSQWLTGPAARADGHAWRARACAVLTGIG 199
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC--IFTATDLPMKRKIL 249
TVL D+PRL+VR++ T QP +++DS L++ P L G I+ A KR+ L
Sbjct: 200 TVLADDPRLDVRAVPTDRQPALVLVDSALQV-PLDAALFGAERAVHIYAAVAPDAKRRAL 258
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
E+ G V +LP+ GKVDL A++ +LG+R+INELH+EAGYQLN +L+ GCVDELLLY++
Sbjct: 259 EERGATVSLLPDVRGKVDLVAMVRDLGRREINELHVEAGYQLNGSLLHAGCVDELLLYLA 318
Query: 310 PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+GE + M L P +L + L FH + ++G D+RILAR
Sbjct: 319 PRLVGEGFGMAQLAPLAALSQAQTLAFHSLDRVGDDVRILARL 361
>gi|121609770|ref|YP_997577.1| riboflavin biosynthesis protein RibD [Verminephrobacter eiseniae
EF01-2]
gi|121554410|gb|ABM58559.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Verminephrobacter eiseniae EF01-2]
Length = 371
Score = 359 bits (921), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 171/343 (49%), Positives = 237/343 (69%), Gaps = 4/343 (1%)
Query: 13 NSSPNPRVGCVIVKEKRI-ISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNPRVGCVI + I G T GG HAEI AL NAAA G+ V +T Y+TLEPC
Sbjct: 22 RTSPNPRVGCVIADAAGVVIGRGSTGPAGGAHAEIMALRNAAAGGHSVRGATAYVTLEPC 81
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G T PC +AL+ +GI KV+ ++ DPNPLV+G+G A+L +AG++V+ G + A E+N
Sbjct: 82 SHHGRTGPCCDALVAAGIAKVVASLTDPNPLVAGQGFARLRAAGVAVQVGPGAQAARELN 141
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
+GFFSRM R PWVRMK+A+SLD T+L + SSQWIT +R D H WRAR+CA+LTGIG
Sbjct: 142 VGFFSRMLRHRPWVRMKLAASLDGVTALADGSSQWITGPAARADGHAWRARACALLTGIG 201
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCI--FTATDLPMKRKIL 249
TVL D+PRL+VR++ T QP +++DS LR+ P + + + A + KR+ L
Sbjct: 202 TVLADDPRLDVRALHTERQPALVLLDSALRV-PLDACIFAADRAVHLYAAAENDAKRRAL 260
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
E G + VLP++ G+VDL A++ +L +R++NELH+EAG QLN AL+ +G VDELL+Y++
Sbjct: 261 EQRGATLAVLPDSQGRVDLAAMLHDLARRQVNELHVEAGQQLNGALLRQGLVDELLVYLA 320
Query: 310 PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P LIG M L P +L + L FH ++++G D+RILAR+
Sbjct: 321 PKLIGPGLGMAQLAPLAALSQAQALDFHGLERVGEDVRILARW 363
>gi|365093670|ref|ZP_09330731.1| riboflavin biosynthesis protein RibD [Acidovorax sp. NO-1]
gi|363414154|gb|EHL21308.1| riboflavin biosynthesis protein RibD [Acidovorax sp. NO-1]
Length = 370
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 172/341 (50%), Positives = 235/341 (68%), Gaps = 3/341 (0%)
Query: 14 SSPNPRVGCVIVKEK--RIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
S+PNPRVGCVIV +++ G+T+ GG HAE+ AL +AAA+G+DV +T Y+TLEPC
Sbjct: 22 SNPNPRVGCVIVAGDGLKVLGTGFTQHAGGAHAEVMALRDAAARGHDVRGATAYVTLEPC 81
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
++ G T PC +AL+++GI +V+ +I DPNPLV+G G +L +AG+ V G E+ +N
Sbjct: 82 AHQGRTGPCCDALVQAGIGRVVASITDPNPLVAGHGFERLRAAGVEVVVGPGADESRALN 141
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
IGFFSRM RG PWVR+K A+SLD T+L N SQWITS+ +R D H WRAR+CA+LTGIG
Sbjct: 142 IGFFSRMVRGTPWVRLKAAASLDGATALSNGVSQWITSRTARADGHAWRARACAVLTGIG 201
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILE 250
TVL DNPRL+VR + T QP+ +V+DS L++ +L G +C I+ A K L
Sbjct: 202 TVLDDNPRLDVREVPTPRQPHVVVVDSQLQLPLDANLLIAGRACYIYAAARNDAKEAALA 261
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
G VI LPN GKVDL A++ +LG R INELH+EAG++LN +L+ EG VDELL+Y++P
Sbjct: 262 ARGATVIHLPNAQGKVDLPAMLRDLGARGINELHVEAGHKLNGSLVREGLVDELLVYLAP 321
Query: 311 ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
L+G M P +L + L+F Q +GPD+R++AR
Sbjct: 322 RLLGPGLGMAQFGPLQALADGLALEFTSAQMVGPDLRVVAR 362
>gi|217969969|ref|YP_002355203.1| riboflavin biosynthesis protein RibD [Thauera sp. MZ1T]
gi|217507296|gb|ACK54307.1| riboflavin biosynthesis protein RibD [Thauera sp. MZ1T]
Length = 365
Score = 358 bits (919), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 170/349 (48%), Positives = 244/349 (69%), Gaps = 5/349 (1%)
Query: 5 LQQAKLSINS-SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNST 63
LQ A +++ SPNPRVGCVIV++ + G+ G HAE+ AL A A +T
Sbjct: 15 LQLAARGLDTTSPNPRVGCVIVRDGTTVGEGWHARAGEAHAEVHALRQAGAA---ARGAT 71
Query: 64 VYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLM 123
Y+TLEPCS+FG TPPC +ALI++G+ +VI A+ DPNPLV+G+G+A+L ++GI+ GL+
Sbjct: 72 AYVTLEPCSHFGRTPPCADALIEAGVARVIAAMEDPNPLVAGRGLARLRASGIAAAHGLL 131
Query: 124 QKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARS 183
+ A E+NIGF SRM RG PWVR+K+A +LD K++L N SQWIT +R D H WRAR+
Sbjct: 132 AEAAQELNIGFVSRMTRGRPWVRLKVAGTLDGKSALDNGVSQWITGPAARRDGHRWRARA 191
Query: 184 CAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLP 243
CAILTGIGTV +D+P+L VR + QP RI++D+ L + P R+L+G I T +
Sbjct: 192 CAILTGIGTVREDDPQLGVRDVPCERQPLRILVDARLEVSPQARILQGEPILIATGSTDQ 251
Query: 244 MKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDE 303
+ +L GHE++ +PN GKVDL A++ LG+R INELH+EAG++LN +L+ EGCVDE
Sbjct: 252 ARIDMLRAAGHEIVFVPNAAGKVDLGALLRLLGERGINELHVEAGFKLNGSLLREGCVDE 311
Query: 304 LLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
LL+Y++P+L+G+ A +F LP L+ +L ++++IGPD+R++AR
Sbjct: 312 LLIYLAPMLVGDAAQGLFNLPALTRLEGATRLDIRDLRRIGPDLRLIAR 360
>gi|238024083|ref|YP_002908315.1| riboflavin biosynthesis protein RibD [Burkholderia glumae BGR1]
gi|55509025|gb|AAV52810.1| putative deaminase [Burkholderia glumae BGR1]
gi|148562469|gb|ABQ88346.1| putative deaminase [Burkholderia glumae]
gi|237878748|gb|ACR31080.1| riboflavin biosynthesis protein RibD [Burkholderia glumae BGR1]
Length = 384
Score = 358 bits (918), Expect = 3e-96, Method: Compositional matrix adjust.
Identities = 173/357 (48%), Positives = 245/357 (68%), Gaps = 5/357 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + ++PNPRVGCVIVK +I GYT+ G +HAE+ A+ +A ++G+++
Sbjct: 24 MAKALELAARGLYTTTPNPRVGCVIVKHGMLIGEGYTQPAGHDHAEVRAMKDARSRGHEL 83
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC + L+++GI V+ A+ DPNP VSG+G A L AGI V+
Sbjct: 84 RGATAYVTLEPCSHYGRTPPCAKGLVEAGIATVVAAMEDPNPQVSGRGYAMLREAGIEVR 143
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF SRM R PWVRMK+A+SLD +++L + +SQWIT +R D H W
Sbjct: 144 GGVLEDEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPDGASQWITGSAARADGHAW 203
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+C+ILTGIGTV +D+P+LNVR I T QP R++ID+ L + R++ G +F
Sbjct: 204 RARACSILTGIGTVRRDDPQLNVRGIDTPRQPRRVLIDARLDLPHEARLMAGPPPLVFCG 263
Query: 240 ---TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
+ L G EV+ L + G VDL AV+ ELG R NELH+EAG L+ AL+
Sbjct: 264 ELDASARARADALRARGAEVVSLASARGSVDLAAVLAELGGRGDNELHVEAGRTLSGALL 323
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
G VDELL+Y++P L+G +A MF L SL+ ++KL+FHE++++G D+RILARF
Sbjct: 324 RAGLVDELLVYVAPSLLGADAAAMFELSAPISLESRVKLRFHEVERVGEDLRILARF 380
>gi|330815405|ref|YP_004359110.1| deaminase [Burkholderia gladioli BSR3]
gi|327367798|gb|AEA59154.1| Putative deaminase [Burkholderia gladioli BSR3]
Length = 384
Score = 357 bits (917), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 174/357 (48%), Positives = 243/357 (68%), Gaps = 5/357 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + ++PNPRVGCVIVK +I GYT+ G +HAE+ A+ +A A+G+++
Sbjct: 24 MARALELAARGLYTTTPNPRVGCVIVKHGILIGEGYTQPAGHDHAEVRAMKDARARGHEL 83
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC + L+++GI V+ A+ DPNP VSG+G A L AGI V+
Sbjct: 84 RGATAYVTLEPCSHYGRTPPCAKGLVEAGIATVVAAMEDPNPQVSGRGYAMLREAGIEVR 143
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++++EA E+NIGF SRM R PWVRMK+A+SLD +++L +SQWIT +R D H W
Sbjct: 144 GGVLEEEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPGGASQWITGAAARADGHAW 203
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+C+ILTGIGTV D+P+LNVR I T QP R++ID L + R++ G +F
Sbjct: 204 RARACSILTGIGTVRGDDPQLNVRGIDTPRQPRRVLIDGRLDLPHEARLMAGAPPLVFCG 263
Query: 240 ---TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
+ L G EV+ L N G VDL AV+ ELG R NELH+EAG L+ AL+
Sbjct: 264 ELDAPARARADALRARGAEVVSLANARGSVDLAAVLAELGCRGDNELHVEAGRTLSGALL 323
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
G VDELL+Y++P L+G +A MF L SL+ ++KL+FH+++++G D+RILARF
Sbjct: 324 RAGLVDELLVYVAPSLLGADAAAMFELSAPVSLESRVKLRFHDVERVGEDLRILARF 380
>gi|222111713|ref|YP_002553977.1| riboflavin biosynthesis protein ribd [Acidovorax ebreus TPSY]
gi|221731157|gb|ACM33977.1| riboflavin biosynthesis protein RibD [Acidovorax ebreus TPSY]
Length = 370
Score = 357 bits (915), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 166/342 (48%), Positives = 242/342 (70%), Gaps = 4/342 (1%)
Query: 14 SSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
S+PNPRVGCVI + ++ G+T+ GG HAE+ AL +AAA+G DV +T Y+TLEPC+
Sbjct: 22 SNPNPRVGCVITSDAGAVLGQGFTQQAGGPHAEVMALRDAAARGNDVRGATAYVTLEPCA 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G T PC +ALI++GI +V+ ++ DPNPLV+G+G A+L +AG++V+ G E E+NI
Sbjct: 82 HQGRTGPCCDALIQAGIARVVASVADPNPLVAGQGFARLRAAGVAVEAGPGAAETRELNI 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GFFSRM RG+PWVRMK A+SLD T+L N +SQWITS +R D H WRAR+CA+L+GIGT
Sbjct: 142 GFFSRMVRGMPWVRMKAAASLDGVTALGNGASQWITSPAARADGHAWRARACAVLSGIGT 201
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS--CIFTATDLPMKRKILE 250
VL+D+P LNVR + T QP+ +++DS L+ P R+ I+ A + L
Sbjct: 202 VLEDDPLLNVREVATPRQPHLVIVDSRLQTPPGARLFDVADRQVLIYAAQGEAQAAEALR 261
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
G V+VLPN GKVDL A++ +L +R +NELH+EAG++LN + + EG VDE+LLY +P
Sbjct: 262 ARGATVVVLPNARGKVDLPAMLRDLARRSVNELHVEAGHKLNGSFLREGLVDEMLLYQAP 321
Query: 311 ILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+L+G A+ + + P +L ++++FH +++IGPD+R++AR
Sbjct: 322 LLLGSGAHGLASWGPLQALSDGVRMEFHSVRQIGPDLRVVAR 363
>gi|332530146|ref|ZP_08406095.1| riboflavin biosynthesis protein RibD [Hylemonella gracilis ATCC
19624]
gi|332040416|gb|EGI76793.1| riboflavin biosynthesis protein RibD [Hylemonella gracilis ATCC
19624]
Length = 377
Score = 356 bits (913), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 176/363 (48%), Positives = 247/363 (68%), Gaps = 13/363 (3%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
LAL + L + +SPNPRVGCVIV E +++ G+T+ GG HAE+ AL +A A+G+DV
Sbjct: 10 ALALAEQGLYL-TSPNPRVGCVIVGVEGQLLGEGHTQRAGGPHAEVMALRDAQARGHDVR 68
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
+T Y+TLEPC++ G T PC EAL +GI KV+ ++ DPNP V+G+G A+L +AG+ V+
Sbjct: 69 GATAYVTLEPCAHQGRTGPCCEALAAAGIGKVVASLEDPNPKVAGQGFARLRAAGVVVEV 128
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
G ++ E+N+GFFSRMQRG+PWVRMKIA+SLD +T+L N SQWITS E+R D H WR
Sbjct: 129 GPGAAQSRELNLGFFSRMQRGLPWVRMKIAASLDGQTALQNGLSQWITSPEARADGHAWR 188
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVL----------K 230
AR+CAILTG+GTV +DNPRL+VR ++T QP +V+DS L P + +
Sbjct: 189 ARACAILTGMGTVREDNPRLDVRLVETPRQPRLVVVDSRLETPPTAALFEPHRDTAPGRE 248
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELG-KRKINELHIEAGY 289
I+ A ++ L+ G V+ LPN GKVDL A++ +L +R+INELH+EAG+
Sbjct: 249 AQPVLIYGAVTDAARQSALQARGATVVHLPNAQGKVDLAALLRDLATQREINELHVEAGH 308
Query: 290 QLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
QLN +L+ EG VDELL+Y++P L+G M + P +L + L + EI ++GPD+R+L
Sbjct: 309 QLNGSLLREGLVDELLIYLAPKLLGAGRGMAQIGPLNTLTDAVTLDYREITQVGPDLRVL 368
Query: 350 ARF 352
AR
Sbjct: 369 ARL 371
>gi|241763274|ref|ZP_04761331.1| riboflavin biosynthesis protein RibD [Acidovorax delafieldii 2AN]
gi|241367549|gb|EER61836.1| riboflavin biosynthesis protein RibD [Acidovorax delafieldii 2AN]
Length = 368
Score = 355 bits (912), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 171/352 (48%), Positives = 248/352 (70%), Gaps = 3/352 (0%)
Query: 4 ALQQAKLSIN-SSPNPRVGCVIV-KEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
AL+QA ++ S+PNPRVGCV+V + I+ G+T+ GG HAE+ AL +AA G DV
Sbjct: 11 ALRQAARALFISNPNPRVGCVLVDSDGTILGKGFTQQAGGPHAEVMALRDAATGGRDVRG 70
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPC++ G T PC++ALI +GI +V+ +I DPNPLV+G+G A+L +AG++V+ G
Sbjct: 71 ATAYVTLEPCAHQGRTGPCSDALISAGIGRVVASIEDPNPLVAGQGFARLRAAGVAVEVG 130
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
E+ E+NIGFFSRM RG+PWVR K A+SLD T+L N +SQWITS +R D H WRA
Sbjct: 131 PGACESRELNIGFFSRMVRGVPWVRAKTAASLDGATALSNGASQWITSPAARADGHAWRA 190
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTAT 240
R+CA+LTGIGTVL DNPRL+VR+++T QP+ +V+DS L+ P + +C I+TA
Sbjct: 191 RACAVLTGIGTVLDDNPRLDVRALQTPRQPHVVVVDSQLQTPPDAHLFIAERACYIYTAV 250
Query: 241 DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
+K L+ G VI LP GKVDL A++ +L +R +NELH+EAG++L +L+ EG
Sbjct: 251 QNDVKEAALQARGATVIHLPGPHGKVDLPAMLRDLAQRGMNELHVEAGHKLTGSLLREGL 310
Query: 301 VDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
VDE+L+Y++P L+G ++ + P +L + + + F ++++G DIRILA+
Sbjct: 311 VDEMLVYLAPTLLGPGLSIANIGPFDNLAQGVAMDFTSVERVGADIRILAQI 362
>gi|423015554|ref|ZP_17006275.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans
AXX-A]
gi|338781453|gb|EGP45843.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans
AXX-A]
Length = 392
Score = 355 bits (910), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 167/351 (47%), Positives = 240/351 (68%), Gaps = 2/351 (0%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL Q + +++PNPRVGCVIV++ R++ G T+ PGG HAE+ AL +A A+G V
Sbjct: 23 ALALAQTVM-YSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCALRDAQARGESVAG 81
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+TVY+TLEPCS+FG TPPC +AL+ + ++V++AI DPNPLV+GKG+A+L AGI+V G
Sbjct: 82 ATVYVTLEPCSHFGRTPPCVDALLAAAPERVVVAIGDPNPLVNGKGLARLREAGIAVTTG 141
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
+ ++EA +N GF SRM RG+PW +K+A+SLD +++L+N SQWIT E+R D H WRA
Sbjct: 142 ICREEALALNAGFISRMSRGLPWTWLKMAASLDGRSALHNGLSQWITGPEARADGHHWRA 201
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATD 241
RSC +LTGIGTVLKD+P+L VRS++T QP R V+D I R+ GG +FTA
Sbjct: 202 RSCVVLTGIGTVLKDDPQLTVRSVQTPRQPRRAVVDGRFEIPEDARLFDGGEVIVFTARA 261
Query: 242 LPMKRKILEDLGHEVIVLPNNL-GKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
K+ LE V+ LP +VDL A++ ++ NE+H+EAG L+ AL+ GC
Sbjct: 262 DAAKQARLEARNVRVVALPAETPDRVDLPAMMRWFAAQQFNEVHVEAGAGLSGALVAAGC 321
Query: 301 VDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+DELL+Y++P+L+G+A + LP LD + +F E +++ D+R+ AR
Sbjct: 322 IDELLIYMAPMLLGDAAGVVKLPMLERLDAAPRYEFIEAERVAADLRVRAR 372
>gi|331001110|ref|ZP_08324741.1| riboflavin biosynthesis protein RibD [Parasutterella
excrementihominis YIT 11859]
gi|329569415|gb|EGG51193.1| riboflavin biosynthesis protein RibD [Parasutterella
excrementihominis YIT 11859]
Length = 355
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 241/352 (68%), Gaps = 1/352 (0%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AK + N PNP VGCVIVK++RII G+T+ G HAE+ AL +AA++G V
Sbjct: 1 MRRALELAKKARFNCPPNPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMALRDAASRGESV 60
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS++G TPPC AL + + +V+ A+ DPNPLV+GKG+ L AG+ V+
Sbjct: 61 AGATVYVTLEPCSHYGRTPPCALALKNAKVARVVAALKDPNPLVAGKGLKMLEEAGVKVE 120
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL +EA EIN GF R + G+PWVR K+A S+D T+L N SQWITS+E+R D H W
Sbjct: 121 CGLEAEEAEEINRGFLKRQREGMPWVRTKMAMSVDGNTALANGKSQWITSEEARADGHFW 180
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
R S A+LTG+GTVL DNP++ R + QP ++V+DS L ++P ++ +GG + + A
Sbjct: 181 RGISGAVLTGLGTVLADNPQMTARFEGVTRQPLKVVVDSNLSLNPDLKIFQGGKTLLVCA 240
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
++ + E G EVI LP GKVDL+A++ EL KR+IN++H+EAG +LN AL +EG
Sbjct: 241 HYDIVRAENFESQGVEVIELPGKDGKVDLRALMRELAKREINDVHVEAGARLNGALAMEG 300
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+DE L+Y++P+ +G+ + LP L + + L+F +IQK+GPD+R++ R
Sbjct: 301 LIDEYLIYVAPVFLGDGRRLLDLPSFKDLCEGVALEFTDIQKVGPDVRLMLR 352
>gi|291613122|ref|YP_003523279.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus
ES-1]
gi|291583234|gb|ADE10892.1| riboflavin biosynthesis protein RibD [Sideroxydans lithotrophicus
ES-1]
Length = 363
Score = 354 bits (909), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 170/354 (48%), Positives = 246/354 (69%), Gaps = 5/354 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL+ A+ + +SPNPRVGCV+VK+ ++ G+ + G HAE+ AL A G
Sbjct: 9 MALALRLAEQGLYTTSPNPRVGCVLVKQHEVVGTGWHERAGEPHAEVHALR---AAGKSA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +GIK+V+ A+ DPNP V+G+G+A+L +AGI V+
Sbjct: 66 KGATAYVTLEPCSHHGRTPPCADALVAAGIKRVVAAMQDPNPQVAGQGIARLRAAGIGVE 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM+ A E+NIGF SRM RGIPWVR K+A+SLD +T+L N SS+WIT + +R D W
Sbjct: 126 CGLMEVAARELNIGFVSRMTRGIPWVRSKVAASLDGRTALANGSSKWITGEAARCDVQHW 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RARSCA+LTGIGTVL D+P+LNVR + + QP R+V+DS LRI +L+ G + ++TA
Sbjct: 186 RARSCAVLTGIGTVLADDPQLNVREMPAARQPLRVVLDSELRISSQAEILRNGHALVYTA 245
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
+ K K L G EV+ L GKVDL AV+ +L +R INE+ +EAG +LN AL+ G
Sbjct: 246 CTVDAKLKALSARGAEVVTLAGLDGKVDLFAVMRDLARRGINEVLVEAGRELNGALLKAG 305
Query: 300 CVDELLLYISPILIGEAY-NMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
VDE++LY++P L+G+A + L L +++ L++ +++++G D+RI+A+
Sbjct: 306 LVDEMVLYLAPQLLGDAARGLAELGELTQLQQRVPLQWQDVRQVGSDLRIVAKI 359
>gi|303258272|ref|ZP_07344279.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium
1_1_47]
gi|302859025|gb|EFL82109.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium
1_1_47]
Length = 363
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 167/352 (47%), Positives = 241/352 (68%), Gaps = 1/352 (0%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AK + N PNP VGCVIVK++RII G+T+ G HAE+ AL +AA++G V
Sbjct: 9 MRRALELAKKARFNCPPNPAVGCVIVKDRRIIGEGFTQKTGEAHAEVMALRDAASRGESV 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS++G TPPC AL + + +V+ A+ DPNPLV+GKG+ L AG+ V+
Sbjct: 69 EGATVYVTLEPCSHYGRTPPCALALKNAKVARVVAALKDPNPLVAGKGLKMLEEAGVKVE 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL +EA EIN GF R + G+PWVR K+A S+D T+L N SQWITS+E+R D H W
Sbjct: 129 CGLEAEEAEEINRGFLKRQREGMPWVRTKMAMSVDGNTALANGKSQWITSEEARADGHFW 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
R S A+LTG+GTVL DNP++ R + QP ++V+DS L ++P ++ +GG + + A
Sbjct: 189 RGISGAVLTGLGTVLADNPQMTARFEGVTRQPLKVVVDSNLSLNPDLKIFQGGKTLLVCA 248
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
++ + E G EVI LP GKVDL+A++ EL KR+IN++H+EAG +LN AL +EG
Sbjct: 249 RYDIVRAENFESQGVEVIELPGKDGKVDLRALMRELAKREINDVHVEAGARLNGALAMEG 308
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+DE L+Y++P+ +G+ + LP L + + L+F +IQK+GPD+R++ R
Sbjct: 309 LIDEYLIYVAPVFLGDGRRLLDLPSFKDLCEGVALEFTDIQKVGPDVRLMLR 360
>gi|337279161|ref|YP_004618633.1| riboflavin biosynthesis bifunctional protein ribD :
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase) [Ramlibacter tataouinensis TTB310]
gi|334730238|gb|AEG92614.1| candidate riboflavin biosynthesis bifunctional protein ribD :
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase) [Ramlibacter tataouinensis TTB310]
Length = 385
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 173/356 (48%), Positives = 246/356 (69%), Gaps = 6/356 (1%)
Query: 3 LALQQAKLSIN----SSPNPRVGCVI-VKEKRIISCGYTKSPGGNHAEIDALLNAAAQGY 57
LA Q +L+ S+PNPRVGC++ RI+ G+T+ GG HAE+ AL +AAA+G+
Sbjct: 24 LAFQALELARQALWLSNPNPRVGCILCAPAGRILGQGHTQQAGGPHAEVMALRDAAARGH 83
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
DV +T Y+TLEPCS+ G T PC +ALI++GI +V+ +I DPNPLVSG+G +L +AG+
Sbjct: 84 DVRGATAYVTLEPCSHHGRTGPCCDALIQAGIARVVASIADPNPLVSGRGFERLRAAGVQ 143
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V+ G + E+NIGFFSRM R PWVR+K+A+SLD T+L N +SQWITS+ +R D H
Sbjct: 144 VEVGAGAAGSRELNIGFFSRMVRQTPWVRLKVAASLDGTTALDNGASQWITSEAARTDGH 203
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS-CI 236
WRAR+CA+LTGIGTVL+D+P+L+VR ++ QP+ +++DS L + R+L+ G +
Sbjct: 204 AWRARACAVLTGIGTVLEDDPQLDVRLVQAPRQPHAVLVDSRLELPLTARLLRPGRKLLV 263
Query: 237 FTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
+ A KR LE G VI+LP GKVDL A++ +L +R++NELH+EAG++LN +L+
Sbjct: 264 YAAVADAAKRAALEARGATVILLPGPGGKVDLPAMLRDLARREVNELHVEAGHKLNGSLV 323
Query: 297 LEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
EG VDE L+Y++P L+G M L P L K + L+F + +GPD+RILAR
Sbjct: 324 REGLVDEFLVYLAPKLLGPGRGMAALAPLGELSKAVPLQFTSTEAVGPDLRILARI 379
>gi|119899093|ref|YP_934306.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Azoarcus sp. BH72]
gi|119671506|emb|CAL95419.1| AMP deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Azoarcus sp. BH72]
Length = 363
Score = 353 bits (907), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 170/341 (49%), Positives = 237/341 (69%), Gaps = 4/341 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCV+V++ I+ G+ + G HAE+ AL A + +T Y+TLEPCS
Sbjct: 24 TTTPNPRVGCVLVRDGEIVGEGWHQRAGEAHAEVHALRAAGER---AAGATAYVTLEPCS 80
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC EAL+ +G+++V+ A+ DPNPLV+G G+A+L +AGI GL++ EA E+NI
Sbjct: 81 HFGRTPPCCEALVAAGVRRVVAAMEDPNPLVAGSGLARLRAAGIDTAHGLLESEARELNI 140
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVR+K A++LD KT+L N SQWIT + +R+D H WRAR+CAILTGIGT
Sbjct: 141 GFISRMTRGRPWVRLKAAATLDGKTALANGVSQWITGEAARSDGHRWRARACAILTGIGT 200
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDL 252
V +D+P+L VR + QP R+V+D+ L I R+L+G I TA + + L
Sbjct: 201 VREDDPQLTVRGVPCERQPLRVVVDARLEIGREARILQGAPVLIATAIEEGERAAELRAA 260
Query: 253 GHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPIL 312
GHEV+ L N GKV L A++ L R INELH+EAG++LN +L+ EGCVDELLLY++P+L
Sbjct: 261 GHEVLSLANEAGKVALPALLQALAARGINELHVEAGFKLNGSLLREGCVDELLLYMAPML 320
Query: 313 IGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+G+ A MF L SLD+ ++L ++++IG D R+LAR
Sbjct: 321 VGDSAQGMFNLSALTSLDQALRLDIRDMRRIGEDFRVLARL 361
>gi|160900631|ref|YP_001566213.1| riboflavin biosynthesis protein RibD [Delftia acidovorans SPH-1]
gi|160366215|gb|ABX37828.1| riboflavin biosynthesis protein RibD [Delftia acidovorans SPH-1]
Length = 369
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 179/341 (52%), Positives = 242/341 (70%), Gaps = 3/341 (0%)
Query: 14 SSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
SSPNPRVGCV+V + R++ G+T+ GG HAE+ AL +A A+G DV +T Y+TLEPCS
Sbjct: 22 SSPNPRVGCVLVAPDGRVVGQGFTQQAGGPHAEVMALRDAVARGEDVRGATAYVTLEPCS 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G T PC +ALI +G+ KV+ A+ DPNP V+G+G A+L +AG+ V G E+ E+NI
Sbjct: 82 HQGRTGPCCDALIAAGVAKVVGALTDPNPQVAGQGFARLRAAGVDVVVGPGADESRELNI 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GFFSRM RGIPWVRMK ASSLD T+L+N +SQWITS E+R D H WRAR+C +LTGIGT
Sbjct: 142 GFFSRMLRGIPWVRMKAASSLDGATALHNGTSQWITSPEARADGHAWRARACTLLTGIGT 201
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILED 251
VL+D+PRLNVR + T QP V+DS L + R L+G C I+T++ K L+D
Sbjct: 202 VLEDDPRLNVRDVATPRQPRIAVVDSRLDMPLTARALQGPAECLIYTSSRDASKTSALQD 261
Query: 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPI 311
LG VI +PN GKVDL A++ +L R NELH+EAG++LN +L+ EG VDELLLY++P
Sbjct: 262 LGATVIPMPNAHGKVDLCAMLRDLAARGTNELHVEAGFKLNGSLVREGLVDELLLYLAPK 321
Query: 312 LIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
L+G + + P +L + + L H++Q+IGPD+R++AR
Sbjct: 322 LLGTGGMGIASFGPLDALSEALALALHDVQRIGPDLRVVAR 362
>gi|358636046|dbj|BAL23343.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase oxidoreductase
protein [Azoarcus sp. KH32C]
Length = 354
Score = 349 bits (896), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 170/353 (48%), Positives = 245/353 (69%), Gaps = 5/353 (1%)
Query: 1 MTLALQQAKLSINS-SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L +++ SPNPRVGCV++++ +++ G+ + G HAEI+AL A G
Sbjct: 1 MARALELAALGLDTTSPNPRVGCVLMRDGQVVGEGWHRRAGEAHAEIEALRMA---GEAA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G TPPC +ALI +G+ V+ A+ DPNPLV+G G+ +L +AGI
Sbjct: 58 RGATAYVTLEPCAHHGRTPPCADALIAAGVASVVAAMEDPNPLVAGGGLERLRAAGIPAT 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +A E+NIGF SRM RG PW+R+K A +LD KT+L N SQWIT + +R D H W
Sbjct: 118 AGLMADDARELNIGFVSRMTRGRPWLRLKAAGTLDGKTALNNGVSQWITGEAARRDGHRW 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAILTGIGTV +D+P+L VR+I QP R+++D+ L + ++L+GG + I A
Sbjct: 178 RARACAILTGIGTVREDDPQLTVRAIPCERQPARVLVDARLEVPLSAKILQGGTTLIAAA 237
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
T K L G EV++LPN GKVDL A++ ELG+R NE+H EAG++LN +L+ EG
Sbjct: 238 TGDKAKIAELAARGVEVVMLPNPQGKVDLPALMSELGRRGFNEVHAEAGFRLNGSLLREG 297
Query: 300 CVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
CVDELLLY++P+L+G+ A +F L LD+ ++L ++++IG D+R++AR
Sbjct: 298 CVDELLLYLAPMLVGDTAQGLFNLTELTRLDQAVRLDIRDLRRIGEDLRLVAR 350
>gi|410694605|ref|YP_003625227.1| Riboflavin biosynthesis protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)] [Thiomonas sp. 3As]
gi|294341030|emb|CAZ89425.1| Riboflavin biosynthesis protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)] [Thiomonas sp. 3As]
Length = 387
Score = 349 bits (895), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 164/355 (46%), Positives = 241/355 (67%), Gaps = 17/355 (4%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+SPNPRVGCV+V++ +++ G T + G +HAE+ A+ A +G++V +T Y+TLEPC+
Sbjct: 29 RTSPNPRVGCVLVRDGQVLGEGATLAAGQDHAEVQAVKQAWERGHEVRGATAYVTLEPCA 88
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC + L G+ +V+ A+ DPNPLV+G+G+ +L AGI V GL EA EIN+
Sbjct: 89 HHGRTPPCADLLATQGVARVVAALVDPNPLVAGQGLQRLRDAGIQVDVGLFADEAREINL 148
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVR+K+A+SLD T+L N +SQWITS+ +R D H WRAR+CA+LTG+GT
Sbjct: 149 GFISRMVRGTPWVRLKVAASLDGVTALPNGTSQWITSEAARADGHHWRARACAVLTGLGT 208
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKI---- 248
V D+P+LNVR+++T QP RIV+DS L R+L+ S ++ LP ++
Sbjct: 209 VRADDPQLNVRAVQTPRQPIRIVVDSRLECPATVRLLQSADSPLWIVHALPPEQAAPRLA 268
Query: 249 -----------LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
L+D+ + V P+ GK DL+A++ LG+R INELH EAG +LN +L+
Sbjct: 269 ALRSAATASLDLQDIA--LPVDPDKPGKTDLRALMQVLGQRGINELHCEAGEKLNGSLLR 326
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
G VDELL+Y++P L+GE + L P+ +++ + L++H++Q+IG D+RILARF
Sbjct: 327 AGVVDELLMYLAPQLLGEGAGLAALGPYQQVNEGLALRWHDVQRIGADLRILARF 381
>gi|398812226|ref|ZP_10570998.1| riboflavin biosynthesis protein RibD [Variovorax sp. CF313]
gi|398078590|gb|EJL69486.1| riboflavin biosynthesis protein RibD [Variovorax sp. CF313]
Length = 371
Score = 347 bits (890), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 169/345 (48%), Positives = 238/345 (68%), Gaps = 6/345 (1%)
Query: 13 NSSPNPRVGCVIVKEKR-IISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNPRVGCV+V +I GYT+ GG+HAE+ AL +AAA+G+ V +T ++TLEPC
Sbjct: 20 ETDPNPRVGCVLVDANGGVIGQGYTQRVGGSHAEVMALSDAAARGHSVAGATAWVTLEPC 79
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
++ G T PC +AL+ +GI +V+ ++ DPNPLV+G+G +L +AG+ V+ G EA E+N
Sbjct: 80 AHHGRTGPCCDALVAAGIGRVVASLADPNPLVAGQGFERLRAAGVEVEVGPGAAEARELN 139
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
IGFFSRM R PWVR+K A+SLD KT L+N SQWITS+ +R D H WRAR+ A+LTG+G
Sbjct: 140 IGFFSRMVRKTPWVRLKAAASLDGKTGLHNGVSQWITSEPARADGHAWRARASAVLTGVG 199
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRV-LKGGGSCIFTATDLPMKRKILE 250
TVL+D+PRL+VR ++T+ QP+ +VIDS L+ P ++ L G I+ A K LE
Sbjct: 200 TVLEDDPRLDVRLVETTRQPHVVVIDSQLQTPPDAKLFLPGRAVWIYAAAQDGSKAAALE 259
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
G + LPN GKVDL A++ +L +R++NELH+EAG++LN +L+ EG VDELL+Y++P
Sbjct: 260 ARGAIITFLPNAQGKVDLAAMLRDLARREVNELHVEAGHKLNGSLLREGLVDELLVYLAP 319
Query: 311 ILIGEAYNM----FTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
LIG+ M T P L + L+F + IGPD+RI+AR
Sbjct: 320 KLIGDGLGMASGIHTGGPLADLAGALPLEFRTFEWIGPDLRIVAR 364
>gi|422322496|ref|ZP_16403537.1| riboflavin biosynthesis protein ribd [Achromobacter xylosoxidans
C54]
gi|317402603|gb|EFV83165.1| riboflavin biosynthesis protein ribd [Achromobacter xylosoxidans
C54]
Length = 386
Score = 346 bits (888), Expect = 8e-93, Method: Compositional matrix adjust.
Identities = 169/351 (48%), Positives = 241/351 (68%), Gaps = 2/351 (0%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL Q + +++PNPRVGCVIV++ R++ G T+ PGG HAE+ AL +A A+G V
Sbjct: 17 ALALAQTVM-YSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCALRDAQARGESVAG 75
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+TVY+TLEPCS+FG TPPC +AL+ + +V++AI DPNPLV+GKG+A+L AGI+V G
Sbjct: 76 ATVYVTLEPCSHFGRTPPCVDALLAAAPARVVVAIGDPNPLVNGKGLARLRQAGIAVTTG 135
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
+ ++EA +N GF SRM RG+PW +K+A+SLD +++L+N SQWIT E+R D H+WRA
Sbjct: 136 ICREEALALNAGFISRMSRGLPWTWLKMATSLDGRSALHNGLSQWITGPEARADGHLWRA 195
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATD 241
RSC +LTGIGTVLKD+P+L VRS++T QP R V+D I R+ GG +FTA
Sbjct: 196 RSCVVLTGIGTVLKDDPQLTVRSVQTPRQPRRAVVDGRFEIPEDARLFDGGEVIVFTARV 255
Query: 242 LPMKRKILEDLGHEVIVLP-NNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
K+ LE V+ +P +VDL A++ L ++ NE+H+EAG L+ AL+ GC
Sbjct: 256 DAAKQARLEARNVRVVSMPAAEPDRVDLPAMMRWLAAQQFNEVHVEAGAGLSGALVAAGC 315
Query: 301 VDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDELL+Y++P+L+G+A + LP LD + +F E Q++ D+R+ AR
Sbjct: 316 VDELLIYMAPMLLGDAAGVVRLPLLERLDAAPRYEFIEAQRVAADLRVRAR 366
>gi|171059615|ref|YP_001791964.1| riboflavin biosynthesis protein RibD [Leptothrix cholodnii SP-6]
gi|170777060|gb|ACB35199.1| riboflavin biosynthesis protein RibD [Leptothrix cholodnii SP-6]
Length = 416
Score = 346 bits (888), Expect = 9e-93, Method: Compositional matrix adjust.
Identities = 166/361 (45%), Positives = 241/361 (66%), Gaps = 23/361 (6%)
Query: 14 SSPNPRVGCVIV-KEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNPRVGCVIV + R++ G+T+ GG HAE+ A+ A A G+ + +T Y+TLEPC+
Sbjct: 43 TEPNPRVGCVIVDAQGRLLGSGHTQQAGGPHAEVMAMRTARAAGHSLIGATAYVTLEPCA 102
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC +ALI++G+K+V+ AI DP PLV+G+G+A+L +AGI V+QGLM + A INI
Sbjct: 103 HHGRTPPCADALIEAGLKRVVAAITDPFPLVAGQGLARLAAAGIQVEQGLMAEAATAINI 162
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GFFSR+ R PWVRMK+A+SLD +T+L N SQWIT +R D H WR R+ A+LTGIGT
Sbjct: 163 GFFSRVLRQRPWVRMKVAASLDGRTALMNGQSQWITGAAARADGHAWRRRASAVLTGIGT 222
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILED 251
VL D+PRL+VR + T QP R+V+D+ LR R+L G ++T+ D + L +
Sbjct: 223 VLDDDPRLDVRHVPTPRQPMRVVVDAPLRTPVTARLLAPPGEVLVYTSADETAQAAWLAE 282
Query: 252 L----GHEVIVLPNNL-----------------GKVDLQAVIIELGKRKINELHIEAGYQ 290
+ G + P+ GKVDL A++ +L +R +NELH+EAG++
Sbjct: 283 VQAAHGARAALGPDGTDVAPPLVQCVSMPGGPAGKVDLAAMLADLARRGVNELHVEAGHR 342
Query: 291 LNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
LN +L+ EG VDE L+Y++P L+G M++ P SLD+ I+L++ ++Q +G D+R+LA
Sbjct: 343 LNGSLLREGLVDEFLVYLAPKLLGLGREMWSWGPLESLDQAIELEWGDVQSVGGDLRLLA 402
Query: 351 R 351
R
Sbjct: 403 R 403
>gi|260221154|emb|CBA29435.1| Riboflavin biosynthesis protein ribD [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 363
Score = 345 bits (886), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 171/356 (48%), Positives = 239/356 (67%), Gaps = 15/356 (4%)
Query: 9 KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITL 68
+ S ++PNP V CV+ K++ + G+T+ GG HAE+ AL +AA +G V +T Y+TL
Sbjct: 3 RCSYEANPNPNVYCVVFKDEYCLGLGHTQKAGGPHAEVMALRDAAEKGLSVVGATAYVTL 62
Query: 69 EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK----QGLMQ 124
EPCS+ G T PC +ALI++GIKKV+ DPNPLV+G G A+L +AG+ V+ + +
Sbjct: 63 EPCSHHGRTGPCCDALIQAGIKKVVATNLDPNPLVAGNGFAKLRAAGVEVEVLPSEHPLA 122
Query: 125 KEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSC 184
E+ E+NIGFFSRM R PWVRMK+A+SLD T+L N SQWIT +R D H WRARSC
Sbjct: 123 IESRELNIGFFSRMIRKTPWVRMKVAASLDGTTALDNGVSQWITGPAARADGHAWRARSC 182
Query: 185 AILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRID---PFFRVLKGGGSCIFTATD 241
AILTGIGTVL D PRL+VR ++T QP+ +V+DS L PFF + G I+ A
Sbjct: 183 AILTGIGTVLADRPRLDVRLVETPRQPHLVVVDSKLETPLDAPFF--IAGRAVFIYAAAP 240
Query: 242 LPMKRKILEDLGHEVIVLP------NNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
KR LE +G VI++P GKVDL A++ +LG+R+INELH+EAG++LN +L
Sbjct: 241 NDAKRAALEAVGATVIIMPGIDANGQPTGKVDLAAMMQDLGRREINELHVEAGFKLNGSL 300
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+ EG VDE ++Y++P L+G+ MF L P L + ++L+F + +GPD+R++AR
Sbjct: 301 VREGLVDEFVVYVAPRLLGQGAGMFQLGPLTELSQGVELEFKSTEMLGPDLRVVAR 356
>gi|82701141|ref|YP_410707.1| riboflavin biosynthesis protein RibD [Nitrosospira multiformis ATCC
25196]
gi|82409206|gb|ABB73315.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrosospira
multiformis ATCC 25196]
Length = 366
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 177/353 (50%), Positives = 238/353 (67%), Gaps = 5/353 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + ++SPNPRVGCV+V++ +++ G+ + G HAEI+AL A
Sbjct: 10 MAQALRLAEKGLYSTSPNPRVGCVLVRDGQVVGTGWHERAGEAHAEINALAAAGPA---A 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS++G TPPC +AL+++G+ KVI A+ DPNPLV+G+G A L AGI VK
Sbjct: 67 RGALAYLTLEPCSHYGRTPPCADALVQAGVAKVITAMQDPNPLVAGRGCALLEEAGIEVK 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM+ EA +NIGF SRM RG PWVR+KIA+SLD KT+L N SSQWITS +R D H W
Sbjct: 127 TGLMEAEAKALNIGFVSRMTRGRPWVRVKIAASLDGKTALNNGSSQWITSAAARRDGHRW 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RARSCA++TGIGTVL D+P+L VR I TS QP +V+D L I +L+G G +FTA
Sbjct: 187 RARSCAVMTGIGTVLADDPQLTVRHIHTSRQPMPVVVDRGLDIPLDAGLLRGAGELVFTA 246
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
K L D+G VI+LP++ G VDL A++ L +INE+ +EAG LN LI
Sbjct: 247 AASEGKIVALRDVGAHVILLPDSAGNVDLAAMMRRLADLEINEVLVEAGSGLNGGLIQAD 306
Query: 300 CVDELLLYISPILIGEAY-NMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDE ++Y++P LIG A +M LP +L+ K LK H ++ +G DIRI+AR
Sbjct: 307 LVDEFVIYLAPCLIGNAARDMLKLPELSNLEDKRALKIHNVRAVGQDIRIIAR 359
>gi|163854921|ref|YP_001629219.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bordetella petrii DSM 12804]
gi|163258649|emb|CAP40948.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bordetella petrii]
Length = 380
Score = 345 bits (884), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 169/353 (47%), Positives = 238/353 (67%), Gaps = 2/353 (0%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+ + ++PNPRVGCVIV++ R++ G T+ PGG HAEI AL +AAA+G V
Sbjct: 13 MRRALALARTVMYTTTPNPRVGCVIVRDGRVLGEGATQPPGGPHAEICALRDAAARGESV 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPCS++G TPPC +A+ +G +V++A+ DPNP V G+G+A+L +AGI+V
Sbjct: 73 QGATLYVTLEPCSHYGRTPPCADAVAAAGPARVVVAMGDPNPQVRGQGLARLRAAGIAVT 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+ EA EIN GF +RM RGIPW +K+A+SLD +++L+N SQWIT + +R D H W
Sbjct: 133 SNVCLDEALEINAGFVARMSRGIPWAWVKMAASLDGRSALHNGVSQWITGEAARADGHAW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RARSC +LTG+GTVLKDNPRLNVR+++T P + V+D I R+ G IFTA
Sbjct: 193 RARSCVVLTGMGTVLKDNPRLNVRAVETPRAPRKAVVDGDFAIPEDARLFDGAEVIIFTA 252
Query: 240 TDLPMKRKILEDLGHEVIVLP-NNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
K L V+ LP G+VDL A++ LG+ + NE+H+EAG L AL+
Sbjct: 253 RTDAGKAARLAARNARVVALPGQQAGRVDLPAMMRWLGEHEFNEVHVEAGAGLGGALMSA 312
Query: 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
GC+DELL+Y++P+L+G+A M LP LD +L+F + +IGPD+R+ AR
Sbjct: 313 GCIDELLVYLAPVLLGDAAAMLRLPLIEHLDHARRLEFTDTARIGPDLRLRAR 365
>gi|319794177|ref|YP_004155817.1| riboflavin biosynthesis protein ribd [Variovorax paradoxus EPS]
gi|315596640|gb|ADU37706.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus EPS]
Length = 375
Score = 344 bits (882), Expect = 4e-92, Method: Compositional matrix adjust.
Identities = 169/344 (49%), Positives = 232/344 (67%), Gaps = 6/344 (1%)
Query: 14 SSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNPRVGCV+ E R++ G+T+ GG HAE+ AL +AAAQG+ V +T Y+TLEPCS
Sbjct: 25 TDPNPRVGCVLCDAEGRVLGQGHTQKAGGPHAEVMALRDAAAQGHSVEGATAYVTLEPCS 84
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G T PC +ALI +GI++V+ ++ DPNPLV+G+G +L +AG+ V+ G E+ E+NI
Sbjct: 85 HHGRTGPCCDALIAAGIERVVASLADPNPLVAGQGFERLRAAGVEVEVGPGADESRELNI 144
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GFFSRM R PWVR+K+A+SLD KT L N SQWITS+ +R D H WRAR+ A+LTG+GT
Sbjct: 145 GFFSRMVRKTPWVRLKVAASLDGKTGLENGMSQWITSEPARADGHAWRARASAVLTGVGT 204
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILED 251
VL+DNPRL+VR + T QP+ +V+DS L+ P + G I+ A K LE
Sbjct: 205 VLEDNPRLDVRLVPTPRQPHLVVVDSRLQTPPDAHIFIAGRPVWIYAAVRDEAKAAALEA 264
Query: 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPI 311
G V L N GKVDL A++ +L R +NELH+E+G++LN +LI EGCVDELL+Y++P
Sbjct: 265 RGATVTCLANADGKVDLGAMLKDLAARGVNELHVESGHKLNGSLIREGCVDELLVYLAPK 324
Query: 312 LIGEAYNMFTL----PPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
LIG +M + P SL + L+F + PD+RI+AR
Sbjct: 325 LIGRGLDMASHIHADGPLTSLAGVLPLEFKSVDMFAPDLRIVAR 368
>gi|333913071|ref|YP_004486803.1| riboflavin biosynthesis protein RibD [Delftia sp. Cs1-4]
gi|333743271|gb|AEF88448.1| riboflavin biosynthesis protein RibD [Delftia sp. Cs1-4]
Length = 362
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 178/341 (52%), Positives = 240/341 (70%), Gaps = 3/341 (0%)
Query: 14 SSPNPRVGCVIVKE-KRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
SSPNPRVGCV+V R++ G+T+ GG HAE+ AL +A A+G DV +T Y+TLEPCS
Sbjct: 15 SSPNPRVGCVLVAPYGRVVGQGFTQQAGGPHAEVMALRDAVARGEDVRGATAYVTLEPCS 74
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G T PC +ALI +G+ KV+ A+ DPNP V+G+G A+L +AG+ V G E+ E+NI
Sbjct: 75 HQGRTGPCCDALIAAGVAKVVGALTDPNPQVAGQGFARLRAAGVDVVVGPGADESRELNI 134
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GFFSRM RGIPWVRMK ASSLD T+L+N +SQWITS E+R D H WRAR+C ILTGIGT
Sbjct: 135 GFFSRMLRGIPWVRMKAASSLDGATALHNGTSQWITSPEARADGHAWRARACTILTGIGT 194
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILED 251
VL+D+PRLNVR + T QP V+DS L + +VL+ C I+T++ K L+D
Sbjct: 195 VLEDDPRLNVRDVATPRQPRIAVVDSRLDMPLTAQVLQAPAGCLIYTSSRDASKTSALQD 254
Query: 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPI 311
LG VI +PN GKVDL A++ +L R NELH+EAG++LN +L+ EG VDELLLY++P
Sbjct: 255 LGATVIPMPNAHGKVDLCAMLRDLAARGTNELHVEAGFKLNGSLVREGLVDELLLYLAPK 314
Query: 312 LIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
L+G + + P +L + + L H++Q+IG D+R++AR
Sbjct: 315 LLGTGGMGIASFGPLDALSEALALALHDVQRIGQDLRVVAR 355
>gi|239816083|ref|YP_002944993.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus S110]
gi|239802660|gb|ACS19727.1| riboflavin biosynthesis protein RibD [Variovorax paradoxus S110]
Length = 375
Score = 342 bits (878), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 170/358 (47%), Positives = 244/358 (68%), Gaps = 7/358 (1%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M AL A+ + + PNPRVGCV+V +I G T+ GG HAE+ AL +AAA+G+
Sbjct: 11 MAQALDLARQAGPETDPNPRVGCVLVDANGAVIGQGRTQQVGGPHAEVMALRDAAARGHS 70
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
V +T ++TLEPC++ G T PC +AL +GI +V+ ++ DPNPLV+GKG +L +AG++V
Sbjct: 71 VAGATAFVTLEPCAHHGRTGPCCDALAAAGIGRVVASLADPNPLVAGKGFERLRAAGVAV 130
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ G +EA E+NIGFFSRM R PWVR+K A+SLD KT L N SQWITS+ +R D H
Sbjct: 131 EVGPGAEEARELNIGFFSRMVRKTPWVRLKAAASLDGKTGLRNGVSQWITSEPARADGHA 190
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IF 237
WRAR+ A+LTG+GTVL+D+PRL+VR ++T+ QP+ +++DS L+ P R+ G I+
Sbjct: 191 WRARASAVLTGVGTVLEDDPRLDVRLVETTRQPHVVIVDSQLQTPPGARIFMAGRPVWIY 250
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A K L+ G + LPN GKVDL A++ +L +R++NELH+E+G++LN +L+
Sbjct: 251 AAAQDEAKAAALQARGATIAYLPNAQGKVDLAAMLRDLARREVNELHVESGHKLNGSLLR 310
Query: 298 EGCVDELLLYISPILIGEAYNM----FTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDELL+Y++P LIG+ +M T P L + L+F I++IGPD+RI+AR
Sbjct: 311 EGLVDELLVYLAPKLIGDGLDMASGIHTGGPLADLAGALPLEFRTIERIGPDLRIVAR 368
>gi|91788744|ref|YP_549696.1| 5-amino-6-(5-phosphoribosylamino)uracil
reductase/diaminohydroxyphosphoribosylaminopyrimidine
deaminase [Polaromonas sp. JS666]
gi|91697969|gb|ABE44798.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polaromonas sp.
JS666]
Length = 373
Score = 342 bits (877), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 175/357 (49%), Positives = 243/357 (68%), Gaps = 10/357 (2%)
Query: 4 ALQQAKLSIN-SSPNPRVGCVIVK--EKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
AL+ A+ ++ S PNPRVGCVI ++R++ G T++ GG HAEI AL +AAA+ + V
Sbjct: 11 ALELARHAVGRSEPNPRVGCVIASADDQRVLGTGDTQAVGGAHAEIMALRDAAARRHVVA 70
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
+T Y+TLEPCS+ G T PC +ALI +GIKKV+ +I DPNPLVSG+G ++ +AGI V
Sbjct: 71 GATAYVTLEPCSHHGRTGPCCDALIAAGIKKVVASIADPNPLVSGQGFERMRAAGIEVVV 130
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
G E+ E+NIGFFSRM R PWVRMKIA+SLD KT+L N +SQWITS+ +R D H WR
Sbjct: 131 GPGAAESRELNIGFFSRMIRKTPWVRMKIAASLDGKTALDNGASQWITSEAARTDGHAWR 190
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT 240
AR+ AILTGIGT+L+DNPRL+VRS+ T QP+ +V+DS L++ P L G I+
Sbjct: 191 ARASAILTGIGTILEDNPRLDVRSVATPRQPHLVVVDSRLQL-PLNANLFTGNRTIYVYA 249
Query: 241 DLP--MKRKILEDLGHEVIVLPNNL----GKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
+P K+ LE+ G VI LP KVDL A++ +L +R++NE+H+EAG++LN +
Sbjct: 250 AVPDDAKKTALEERGVTVIYLPGRQTGAPDKVDLTAMLRDLAQREVNEVHVEAGHKLNGS 309
Query: 295 LILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
L+ E VDE L+Y++P L+G M + P L + L+F Q +G D+R++AR
Sbjct: 310 LLREELVDEFLVYLAPKLLGSGNGMASFGPLQQLSDAVPLEFLSAQPVGVDLRVMAR 366
>gi|330823811|ref|YP_004387114.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans
K601]
gi|329309183|gb|AEB83598.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans
K601]
Length = 370
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 171/342 (50%), Positives = 242/342 (70%), Gaps = 4/342 (1%)
Query: 14 SSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
S+PNPRVGCVI ++ G+T+ GG HAE+ AL +AAA G DV +T Y+TLEPC+
Sbjct: 22 SNPNPRVGCVIASGAGAVLGQGFTQQAGGPHAEVVALRDAAASGNDVRGATAYVTLEPCA 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G T PC +ALI++GI +V+ +I DPNPLV G+G A+L +AGI V+ G +++ E+NI
Sbjct: 82 HQGRTGPCCDALIQAGIGRVVASIEDPNPLVGGQGFARLRAAGIDVQVGPGAQQSRELNI 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GFFSRM RG+PWVRMK A+SLD T+L N +SQWIT+ +R D H WRAR+CA+LTGIGT
Sbjct: 142 GFFSRMVRGMPWVRMKAAASLDGVTALANGTSQWITAPAARADGHAWRARACAVLTGIGT 201
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF--TATDLPMKRKILE 250
VL+D+P LNVR + T QP+ +V+DS L+ R+ G +F A P + + L
Sbjct: 202 VLEDDPLLNVREVATPRQPHLVVVDSRLQTPLGARLFDVPGRRVFIYAADGHPDRAQALR 261
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
G VIVLPN GKVDL A++ +LG +NELH+EAG++LN + + EG VDELLLY++P
Sbjct: 262 ARGATVIVLPNARGKVDLPAMLRDLGANGVNELHLEAGHKLNGSFLREGLVDELLLYLAP 321
Query: 311 ILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+L+G A+ + + P +L ++++FH +Q++GPD+R++AR
Sbjct: 322 LLLGSGAHGLASWGPLQALADGVRMEFHGMQQLGPDLRLIAR 363
>gi|319763925|ref|YP_004127862.1| riboflavin biosynthesis protein ribd [Alicycliphilus denitrificans
BC]
gi|317118486|gb|ADV00975.1| riboflavin biosynthesis protein RibD [Alicycliphilus denitrificans
BC]
Length = 370
Score = 341 bits (875), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 173/342 (50%), Positives = 243/342 (71%), Gaps = 4/342 (1%)
Query: 14 SSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
S+PNPRVGCVI ++ G+T+ GG HAE+ AL +AAA G DV +T Y+TLEPC+
Sbjct: 22 SNPNPRVGCVIASGAGAVLGQGFTQQAGGPHAEVVALRDAAASGNDVRGATAYVTLEPCA 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G T PC +ALI++GI +V+ +I DPNPLV G+G A+L +AGI V+ G +++ E+NI
Sbjct: 82 HQGRTGPCCDALIQAGIGRVVASIEDPNPLVGGQGFARLRAAGIDVQVGPGAQQSRELNI 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GFFSRM RG+PWVRMK A+SLD T+L N +SQWIT+ +R D H WRAR+CA+LTGIGT
Sbjct: 142 GFFSRMVRGMPWVRMKAAASLDGVTALANGTSQWITAPAARADGHAWRARACAVLTGIGT 201
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFT-ATDLPMKR-KILE 250
VL+D+P LNVR + T QP+ +V+DS L+ R+ G +F A D P R + L
Sbjct: 202 VLEDDPLLNVREVATPRQPHLVVVDSRLQTPLGARLFDVPGRRVFIYAADGPPDRAQALR 261
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
G VIVLPN GKVDL A++ +LG +NELH+EAG++LN + + EG VDELLLY++P
Sbjct: 262 ARGATVIVLPNARGKVDLPAMLRDLGANGVNELHLEAGHKLNGSFLREGLVDELLLYLAP 321
Query: 311 ILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+L+G A+ + + P +L ++++FH +Q++GPD+R++AR
Sbjct: 322 LLLGSGAHGLASWGPLQALADGVRMEFHGMQQLGPDLRLIAR 363
>gi|121595493|ref|YP_987389.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Acidovorax sp. JS42]
gi|120607573|gb|ABM43313.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Acidovorax sp. JS42]
Length = 366
Score = 340 bits (872), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 166/343 (48%), Positives = 235/343 (68%), Gaps = 4/343 (1%)
Query: 14 SSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
S+PNPRVGCVI ++ G+T+ G +HAE+ AL +AAA+G DV +T Y+TLEPC+
Sbjct: 18 SNPNPRVGCVITDVNGNMLGQGFTQRAGASHAEVMALRDAAARGCDVRGATAYVTLEPCA 77
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G T PC +ALI++GI V+ +I DPNPLV+G+G A+L +AG+ V+ G ++ E+NI
Sbjct: 78 HQGRTGPCCDALIQAGIAHVVASIADPNPLVAGQGFARLRAAGVQVEVGPGGTQSRELNI 137
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GFFSRM RGIPWVRMK A+SLD T+L N +SQWITS +R D H WRAR+CA+LTG+GT
Sbjct: 138 GFFSRMVRGIPWVRMKAAASLDGVTALANGTSQWITSPAARADGHAWRARACAVLTGVGT 197
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS--CIFTATDLPMKRKILE 250
VL D+PRL+VR I T QP+ +++DS L+ R+ I+TA L
Sbjct: 198 VLADDPRLDVREIATPRQPHLVIVDSLLQTPANARLFDVADRRVLIYTARPDAAGAAALR 257
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
G +I LPN+ GKVDL A++ L + +NELH+EAG++LN + + EG VDELLLY++P
Sbjct: 258 ARGATIIELPNDQGKVDLPALLRNLAREGVNELHLEAGHKLNGSFLREGLVDELLLYLAP 317
Query: 311 ILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
I++G+ A + P +L I ++F +Q++GPD+R++AR
Sbjct: 318 IMLGQGAQGLSNWGPLQTLADGIPMQFQAVQQVGPDLRVVARI 360
>gi|120612202|ref|YP_971880.1| riboflavin biosynthesis protein RibD [Acidovorax citrulli AAC00-1]
gi|120590666|gb|ABM34106.1| riboflavin biosynthesis protein RibD [Acidovorax citrulli AAC00-1]
Length = 377
Score = 340 bits (871), Expect = 8e-91, Method: Compositional matrix adjust.
Identities = 170/358 (47%), Positives = 242/358 (67%), Gaps = 8/358 (2%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKE-KRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M LALQ A+ + +SPNPRVGCV+V ++II G T+ GG HAE+ AL +A A+G+
Sbjct: 14 MQLALQLAEDGLYRTSPNPRVGCVLVNAGQQIIGQGSTQRAGGPHAEVMALRDARARGHA 73
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+ +T Y+TLEPCS+ G T PC +AL+++GI +V+ ++ DPNPLV+G+G +L AG+ V
Sbjct: 74 THGATAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLADPNPLVAGQGFERLRGAGVQV 133
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ G + E+NIGFFSRMQRG+PWVRMK A+SLD T+L + +SQWITS E+R D H
Sbjct: 134 EVGPGAAASRELNIGFFSRMQRGLPWVRMKAATSLDGFTALPDGTSQWITSPEARADGHA 193
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDP---FFRVLKGGGSC 235
WRAR+CA+LTGIGT+L D+PRL+VR +T QP+ +IDS+L+ P FF V +
Sbjct: 194 WRARACAVLTGIGTILADDPRLDVREAETPRQPHLAIIDSHLQTPPGARFFEVPQ-RQIL 252
Query: 236 IFTATDLPMKRKILEDLGHEVIVLP-NNLGKVDLQAVIIELGK-RKINELHIEAGYQLNT 293
I+TA+ K +L+D G +VI P G +DL V+ +L + R +NELH+EAG +LN
Sbjct: 253 IYTASADSAKAAVLQDRGAQVIAAPMAGDGHIDLHWVLQDLARQRSVNELHVEAGARLNG 312
Query: 294 ALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
AL+ VDE+LLY++P L+G M P +L + + +I ++G D+RI+AR
Sbjct: 313 ALVRARLVDEILLYMAPTLLGAGRGMAQWGPPGTLAGAHAMAWQDIDRVGADLRIIAR 370
>gi|394989253|ref|ZP_10382087.1| hypothetical protein SCD_01672 [Sulfuricella denitrificans skB26]
gi|393791672|dbj|GAB71726.1| hypothetical protein SCD_01672 [Sulfuricella denitrificans skB26]
Length = 362
Score = 339 bits (870), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 170/354 (48%), Positives = 242/354 (68%), Gaps = 9/354 (2%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAA--AQGY 57
M AL+ A+ + ++PNPRVGCVIV++ +++ G+ G HAEI+AL+ A AQG
Sbjct: 10 MAQALRLAEKGLYTTTPNPRVGCVIVRDGKVVGSGWHARAGEPHAEINALMQAGDLAQG- 68
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+TVY+TLEPCS+ G TPPC ALI++G+ +V++A+ DPNP V G+G+ QL AGI
Sbjct: 69 ----ATVYVTLEPCSHHGRTPPCAGALIQAGVGRVVVAMVDPNPQVEGEGITQLQQAGIQ 124
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
GL++KEA+++NIGF SRM G PW+R+KIA+SLD KT+L N SQWIT ++R D+H
Sbjct: 125 TDIGLLEKEAHDLNIGFVSRMTSGRPWLRLKIAASLDGKTALNNGVSQWITGADARRDAH 184
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RARSCA+LTGIGTVL D+P LNVR ++T QP R+V+DS L++ P ++L +
Sbjct: 185 RLRARSCAVLTGIGTVLADDPMLNVREVETPRQPLRVVVDSTLKMPPSAKMLLEEEILVV 244
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
TA+ K + L G EV+VLP G+VDL ++ ELGKR INE+ +EAG LN AL+
Sbjct: 245 TASGDHGKAENLRKAGAEVLVLPPLDGRVDLARMLDELGKRGINEITVEAGRGLNGALVR 304
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
G VDE ++Y +P+L+G+ A MF LP + ++ +L+ ++ +G D+RI A
Sbjct: 305 LGLVDEFVIYFAPLLLGDRARGMFDLPELVEMGERRELRIADVGMVGRDVRIRA 358
>gi|46575874|dbj|BAB88916.2| deaminase [Burkholderia glumae]
Length = 360
Score = 338 bits (868), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 168/357 (47%), Positives = 238/357 (66%), Gaps = 6/357 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + ++PNPRVGCVIVK +I GYT+ G +HAE+ A+ +A ++G+++
Sbjct: 1 MAKALELAARGLYTTTPNPRVGCVIVKHGMLIGEGYTQPAGHDHAEVRAMKDARSRGHEL 60
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC + L+++GI P P VSG+G A L AGI V+
Sbjct: 61 RGATAYVTLEPCSHYGRTPPCAKGLVEAGIAP-WCGDGGPEPAVSGRGYAMLREAGIEVR 119
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF SRM R PWVRMK+A+SLD +++L + +S WIT +R D H W
Sbjct: 120 GGVLEDEARELNIGFVSRMTRARPWVRMKMAASLDGRSALPDGASSWITGSAARADGHAW 179
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+C+ILTGIGTV +D+P+LNVR I T QP R++ID+ L + R++ G +F
Sbjct: 180 RARACSILTGIGTVRRDDPQLNVRGIDTPRQPRRVLIDARLDLPHEARLMAGPPPLVFCG 239
Query: 240 ---TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
+ L G EV+ L + G VDL AV+ ELG R NELH+EAG L+ AL+
Sbjct: 240 ELDASARARADALRRRGAEVVSLASARGSVDLAAVLAELGGRGDNELHVEAGRTLSGALL 299
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
G VDELL+Y++P L+G +A MF L SL+ ++KL+FHE++++G D+RILARF
Sbjct: 300 RAGLVDELLVYVAPSLLGADAAAMFELSAPISLESRVKLRFHEVERVGEDLRILARF 356
>gi|456062605|ref|YP_007501575.1| riboflavin biosynthesis protein RibD [beta proteobacterium CB]
gi|455439902|gb|AGG32840.1| riboflavin biosynthesis protein RibD [beta proteobacterium CB]
Length = 371
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 176/357 (49%), Positives = 242/357 (67%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL +A+ ++ S+PNPRVGCVIVK+ ++I G+T+ GG HAE+ AL + A+G D
Sbjct: 10 MSEALAEAQKALYLSNPNPRVGCVIVKDGQVIGRGHTQRVGGPHAEVQALADVKAKGLDP 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
STVY+TLEPC++ G TPPC +ALI++ VI+A++DPNPLV GKG+ +L +AGI V+
Sbjct: 70 AGSTVYVTLEPCNHTGRTPPCVDALIEARPAMVIVAMSDPNPLVGGKGLERLKAAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N GF SRM RG+PWVRMKIA+SLD KT+L N SQWIT +R D H W
Sbjct: 130 CGLLEAEAKVLNRGFISRMTRGLPWVRMKIAASLDGKTALPNGQSQWITGPLARADGHHW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLK----GGGSC 235
RA++CAILTG+GTV +D+P LNVR +KT QP+R+++DS L +VLK G
Sbjct: 190 RAQACAILTGVGTVKEDDPTLNVREVKTERQPWRVIVDSKLETPLHSKVLKQLDQSGVIL 249
Query: 236 IFTATDLPM---KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGK-RKINELHIEAGYQL 291
+ + D P+ K E LG EVI + N GKVDL + L + R +NE+H+EAG++L
Sbjct: 250 VCASLDSPVAKEKAAAFEALGIEVIAMANAHGKVDLPKLFQYLAQERHMNEIHVEAGFKL 309
Query: 292 NTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
N +L+ E CVDELLLY +P IGE M + P +LD++ + + + G DIRI
Sbjct: 310 NGSLLREHCVDELLLYYAPFFIGEGIGMANISPLGALDQRQDWQMIDQDRFGSDIRI 366
>gi|325983451|ref|YP_004295853.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. AL212]
gi|325532970|gb|ADZ27691.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. AL212]
Length = 366
Score = 338 bits (867), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 173/356 (48%), Positives = 244/356 (68%), Gaps = 7/356 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A+ + +++PNPRVGCV+ + RII G+ + G HAEI+AL A+
Sbjct: 10 MSYALRLAEKGLYSTTPNPRVGCVLTLDDRIIGSGWHEKAGQPHAEINAL---ASTSEAA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T YITLEPCS++G TPPC ALI +GI KVIIA+ DPNP+VSG+G L AGI+V+
Sbjct: 67 CGATAYITLEPCSHYGRTPPCVYALIDAGITKVIIAMEDPNPMVSGRGCMLLEQAGITVQ 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+Q +A +NIGF RM PW+R+K A+SLD KT+L N SQWIT + +R D H W
Sbjct: 127 TGLLQVQAQALNIGFIMRMMHKKPWIRLKTAASLDGKTALNNGISQWITGEAARQDGHRW 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFT 238
RARSCAI+TGIGTV DNP+L+VR +T+ QP +I++DS+L I ++L+ G IFT
Sbjct: 187 RARSCAIMTGIGTVKSDNPQLSVRHAETARQPKKIIVDSHLNIPLNAKLLQSDGEVLIFT 246
Query: 239 ATDLPM-KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A D + K++ L +G +VIV+PN G +DL+ ++ L +INE+ +EAG +LN ALI
Sbjct: 247 AHDESVEKKEALSRMGAQVIVMPNEKGAIDLKKMMTVLAAMEINEVLVEAGRELNGALIE 306
Query: 298 EGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
G VDE++ Y++P L+G +A M LP L++K +LK +++ IG DIRI+A+F
Sbjct: 307 AGLVDEMIFYLAPHLLGDDARGMIKLPELTCLEQKKELKIQDVRMIGQDIRIIAKF 362
>gi|395003988|ref|ZP_10388077.1| riboflavin biosynthesis protein RibD [Acidovorax sp. CF316]
gi|394318088|gb|EJE54558.1| riboflavin biosynthesis protein RibD [Acidovorax sp. CF316]
Length = 375
Score = 337 bits (865), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 173/341 (50%), Positives = 239/341 (70%), Gaps = 3/341 (0%)
Query: 14 SSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
S+PNPRVGCVI + +++ G+T+ GG HAE+ AL +AAA+G V +T Y+TLEPCS
Sbjct: 28 SNPNPRVGCVITTPDGQVLGQGFTQQAGGPHAEVMALRDAAARGNGVQGATAYVTLEPCS 87
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G T PC +ALI +GI KV+ ++ DPNPLVSG+G A+L +AG+ V G E+ E+NI
Sbjct: 88 HQGRTGPCCDALIGAGIGKVVASLADPNPLVSGQGFARLRAAGVEVVAGPGATESRELNI 147
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GFFSRM RG PWVR+K A+SLD T+L N SQWITS +R D H WRAR+CA+LTGIGT
Sbjct: 148 GFFSRMVRGTPWVRLKTAASLDGTTALANGQSQWITSPAARADGHAWRARACAVLTGIGT 207
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLK-GGGSC-IFTATDLPMKRKILE 250
VL D+PRL+VR + T QP+ +++DS L+ R+ G +C I+TA+D K+ LE
Sbjct: 208 VLDDDPRLDVRDVATPRQPHLVIVDSQLQTPLQARLFSIPGRTCLIYTASDDTAKKAALE 267
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
+ G VI LPN GKVDL A++ +LG+R INELH+EAG++LN + + EG VDELLLY++P
Sbjct: 268 NHGATVICLPNPQGKVDLGAMLQDLGRRAINELHVEAGHKLNGSFLREGLVDELLLYLAP 327
Query: 311 ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
L+G + P +L L++ + ++GPD+R++AR
Sbjct: 328 RLLGPGLGIAQAAPLQALADGTALEYVSVDRLGPDLRLVAR 368
>gi|383759753|ref|YP_005438739.1| riboflavin biosynthesis protein RibD [Rubrivivax gelatinosus IL144]
gi|381380423|dbj|BAL97240.1| riboflavin biosynthesis protein RibD [Rubrivivax gelatinosus IL144]
Length = 373
Score = 337 bits (864), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 164/354 (46%), Positives = 239/354 (67%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
LAL + + + + PNPRVGCV+ E R++ G T+ G HAE+ AL +AAA G+D+
Sbjct: 14 ALALAEGSIGL-TDPNPRVGCVVGHEDGRVLGRGATQRAGEAHAEVMALRDAAAAGHDLR 72
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
+T ++TLEPC++ G TPPC +AL+ +GI +V++A+ DP P V+G G+A+L +AG++V+
Sbjct: 73 GATAWVTLEPCAHHGRTPPCCDALVAAGIARVVVALGDPFPQVAGAGIARLRAAGVAVEM 132
Query: 121 GLMQ--KEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ + A E+NIGF SR+QRG PWVRMKIA+SLD +T+L N +SQWIT E+R D H
Sbjct: 133 ADAEVAEAARELNIGFLSRVQRGRPWVRMKIAASLDGRTALANGASQWITGPEARADGHA 192
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IF 237
WR R+ +LTGIGTVL D+PRL+VR + T+ QP R V+DS LR P R++ G C ++
Sbjct: 193 WRRRAGCVLTGIGTVLDDDPRLDVRLVPTALQPMRAVLDSRLRTPPGARLIPAPGRCLVY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
TA+D + L G EV + G+VDL AV+ +L + +NELH+EAG LN A++
Sbjct: 253 TASDDEGAAQALRAAGAEVRRHADPHGRVDLPAVLADLAGQGVNELHVEAGAGLNGAMLA 312
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G VDELL+Y +P+L+GE M L P +L + ++ + + Q+IGPD+R+ R
Sbjct: 313 AGLVDELLVYAAPLLLGEGRGMAALGPFETLAQGLRWHYVDAQRIGPDLRLRLR 366
>gi|145588458|ref|YP_001155055.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145046864|gb|ABP33491.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Polynucleobacter
necessarius subsp. asymbioticus QLW-P1DMWA-1]
Length = 371
Score = 337 bits (864), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 173/357 (48%), Positives = 237/357 (66%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL +A+ ++ ++PNPRVGCVIVK+ ++I G+T+ GG HAEI A+ +A A G D+
Sbjct: 10 MGEALGEAQKALYLANPNPRVGCVIVKDGQVIGRGHTQRVGGAHAEIQAIADAKANGKDI 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST+Y+TLEPCS+ G TPPC AL+ + KVI+++ DPNPLVSG G+A+L AGI V+
Sbjct: 70 AGSTIYVTLEPCSHTGRTPPCVNALVVARPAKVIVSMLDPNPLVSGGGLARLTDAGIEVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA IN GF SRM RG+PWVRMKIA+SLD KT+L N SQWIT +R D H W
Sbjct: 130 CGLLESEAQAINRGFISRMTRGLPWVRMKIAASLDGKTALPNGQSQWITGPLARADGHHW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRV---LKGGGSCI 236
RA++CAI+TG+GTV +D+P LNVR + T QP+RI++DS L P ++ L+ G I
Sbjct: 190 RAQACAIVTGVGTVKEDDPSLNVREVSTHRQPWRIIVDSKLETPPNAQILNDLQDSGVII 249
Query: 237 FTAT----DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGK-RKINELHIEAGYQL 291
A D K K + G EVI N GKVDL + L + R++NE+HIE+G++L
Sbjct: 250 VCAALDDVDKVAKAKQFQKRGIEVIAFANPQGKVDLPKLFTYLAQEREMNEIHIESGFKL 309
Query: 292 NTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
N +++ EGCVDELLLY +P +GE M +P +L + + + IG D+RI
Sbjct: 310 NGSMLREGCVDELLLYYAPFFMGEGIGMANVPTLPNLSTREDWRILDQSMIGTDLRI 366
>gi|257093103|ref|YP_003166744.1| riboflavin biosynthesis protein RibD [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257045627|gb|ACV34815.1| riboflavin biosynthesis protein RibD [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 365
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 169/358 (47%), Positives = 237/358 (66%), Gaps = 9/358 (2%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + ++PNPRVGCVIV + ++ G+ GG HAE+ AL A G
Sbjct: 10 MARALRLAERGLYTTTPNPRVGCVIVADGEVVGEGWHVRAGGRHAEVHAL---QAAGEKA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EAL+ +G+ +V+ A+ DPNP V+G G+A L +AG+ +
Sbjct: 67 AGATAYVTLEPCSHHGRTPPCVEALLAAGVARVVAAMQDPNPQVAGSGLASLQAAGVRAE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA EINIGF +RM R PW+R+K+A+SLD KT+L N +SQW+T +R D H W
Sbjct: 127 CGLLAAEAGEINIGFVARMTRCRPWLRLKLAASLDGKTALRNGASQWLTGPAARQDGHRW 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK----TSHQPYRIVIDSYLRIDPFFRVLKGGGSC 235
RAR+CAILTGIGTV D+P+LNVR ++ QP ++V+DS L + P R+L+ G
Sbjct: 187 RARACAILTGIGTVRHDDPQLNVRGVEGFAGELRQPLKVVVDSRLELSPDARLLRDGQVL 246
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+ A K L G EV++LP G+VDL A++ EL +R INE+H EAG+ L +L
Sbjct: 247 VAAALVDRAKVDALAQRGAEVLLLPGPAGRVDLAALLDELARRGINEVHGEAGFALGGSL 306
Query: 296 ILEGCVDELLLYISPILIGEAY-NMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+ G VDELLLY++P L+G+A MF LPP SL + +L +++ +GPD+R+LARF
Sbjct: 307 LDAGLVDELLLYLAPCLVGDAARGMFDLPPLASLAGRRRLSIRDLRSVGPDLRLLARF 364
>gi|359798000|ref|ZP_09300578.1| riboflavin biosynthesis protein RibD [Achromobacter arsenitoxydans
SY8]
gi|359364012|gb|EHK65731.1| riboflavin biosynthesis protein RibD [Achromobacter arsenitoxydans
SY8]
Length = 393
Score = 334 bits (857), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 237/351 (67%), Gaps = 2/351 (0%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL Q + ++PNPRVGCVIV++ R++ G T+ PGG HAE+ AL + A+G
Sbjct: 26 ALALAQTVM-CTTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCALRDVQARGESAAG 84
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T+Y+TLEPCS+FG TPPC +A++ + +V++A+ DPNPLV+G+G+A+L +AGI+V G
Sbjct: 85 ATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAMGDPNPLVNGQGLARLRAAGIAVTTG 144
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
+ ++EA +N GF SRM RG+PWV MK+A+SLD +++L+N SQWIT E+R D H WRA
Sbjct: 145 VCREEALAVNAGFISRMSRGLPWVWMKMAASLDGRSALHNGMSQWITGPEARADGHRWRA 204
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATD 241
RSC +LTG+GTVLKD+P+LNVR + T QP + V+D I R+ G +FTA +
Sbjct: 205 RSCVVLTGMGTVLKDDPQLNVRGVDTPRQPRKAVVDGRFEIPEQARLFDGAQVIVFTARE 264
Query: 242 LPMKRKILEDLGHEVIVLPN-NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
K L D V+ LP GKVDL A++ + + + NE+H+EAG L+ AL+ GC
Sbjct: 265 DAAKAARLADRNARVVCLPGAEPGKVDLAAMMRWMAQEQFNEVHVEAGAGLSGALVAAGC 324
Query: 301 VDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDELLLY++P+L+G+A M LP LD + +F E ++G D+ + AR
Sbjct: 325 VDELLLYLAPVLLGDAAGMVRLPMLEHLDAARRYEFIETGRVGADLCVRAR 375
>gi|302879548|ref|YP_003848112.1| riboflavin biosynthesis protein RibD [Gallionella capsiferriformans
ES-2]
gi|302582337|gb|ADL56348.1| riboflavin biosynthesis protein RibD [Gallionella capsiferriformans
ES-2]
Length = 366
Score = 333 bits (853), Expect = 9e-89, Method: Compositional matrix adjust.
Identities = 166/350 (47%), Positives = 239/350 (68%), Gaps = 6/350 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + ++SPNPRVGCV+V++ ++ G+ K G HAE+ ALL+A G
Sbjct: 10 MAQALQLAERGLYSTSPNPRVGCVLVRDGNLLGAGWHKKAGEPHAEVYALLDA---GDAA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +T Y+TLEPCS++G TPPC +ALI +G+ +V++A+ DPNP V+G+G+A+L +AGISV
Sbjct: 67 HGATAYVTLEPCSHYGRTPPCCDALIHAGVARVVVAMQDPNPQVAGRGIAKLRAAGISVD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM+ A E+N GF +RM RG+P VR K+ SLD +T+L N SQWIT ++R D W
Sbjct: 127 CGLMEAAARELNAGFCARMTRGLPQVRSKVGMSLDGRTALSNGVSQWITGADARLDVQHW 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RARSCA+LTGI T+L D+ +LNVR I QP R+V+DS+LR+ R+L+ GG I+ A
Sbjct: 187 RARSCAVLTGINTILADDAQLNVREIDVERQPKRVVLDSHLRMPLDARILQ-GGVLIYAA 245
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
K + L+ G EV++LP G+VDL AV+ +L R NE+ +EAG LN AL+
Sbjct: 246 LRDDHKIERLQQAGAEVVLLPGTDGRVDLPAVMRDLASRGCNEILVEAGAVLNGALLRAE 305
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDE+LLYISP L+G A + L +LD+++ LK+ +++++G D+RI
Sbjct: 306 LVDEMLLYISPQLLGSSARGIAALGELTALDQRVDLKWQDVRQVGRDLRI 355
>gi|427819834|ref|ZP_18986897.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica D445]
gi|410570834|emb|CCN19033.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica D445]
Length = 374
Score = 333 bits (853), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 162/341 (47%), Positives = 237/341 (69%), Gaps = 2/341 (0%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+++PNPRVGCVIV++ +++ G T+ GG HAE+ AL AAA+G + ++TVY+TLEPCS
Sbjct: 14 STAPNPRVGCVIVRDGQVLGEGATQPAGGPHAEVCALREAAARGASLADATVYVTLEPCS 73
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC +AL+ + +V++A+ DPNP V+G+G+A+L +AGI+V +G+ + EA E+N
Sbjct: 74 HFGRTPPCVDALVAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVTEGVCRDEALELNA 133
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF +RM RG+PWV +K+A+SLD +++L+N SQWIT + +R D H WRARS +LTG+GT
Sbjct: 134 GFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWITGEAARADGHHWRARSGVVLTGMGT 193
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILED 251
VLKD+P+LN R+++TSH P + VID I R+ G IFTA K + + D
Sbjct: 194 VLKDDPQLNARAVQTSHPPRKAVIDGRFEIPEDARLFDDGAQVLIFTARSDAAKARRMAD 253
Query: 252 LGHEVIVLPN-NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
VI LP +VDL AV+ L ++INE+H+EAG L+ AL+ E CVDELL+Y++P
Sbjct: 254 RNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSGALLAEDCVDELLVYLAP 313
Query: 311 ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+L+G+A M LP LD + +F E+ +G D+R+ AR
Sbjct: 314 VLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGTDVRLRAR 354
>gi|30248797|ref|NP_840867.1| riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea
ATCC 19718]
gi|30180392|emb|CAD84704.1| Riboflavin biosynthesis bifunctional RibD [Nitrosomonas europaea
ATCC 19718]
Length = 363
Score = 332 bits (852), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 173/355 (48%), Positives = 237/355 (66%), Gaps = 6/355 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A+ + +SPNPRVGCVIV +++ G+ + G HAEI AL A G
Sbjct: 10 MSHALRLAERGLFTTSPNPRVGCVIVNGGKVVGTGWHERAGEPHAEIHALRKA---GDLA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC EALI++G+ KV++A+NDPNP V+G+G L AGI+++
Sbjct: 67 KGATVYVTLEPCSHHGRTPPCVEALIQAGVCKVVMAMNDPNPHVNGQGKEWLQKAGIAIQ 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ +A +NIGF +RM+ PWVR KIA+S D +T+L N SQWITS+ +R D H W
Sbjct: 127 AGLLADQAERLNIGFVTRMRHDRPWVRTKIAASFDGRTALKNGKSQWITSEPARRDGHKW 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFT 238
RARSCAILTGI +V KD+P+L VR I S QP RIV+DS L ++L+ + IFT
Sbjct: 187 RARSCAILTGISSVRKDDPQLTVRYITVSRQPMRIVVDSNLETPLQAKLLQNADTTWIFT 246
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
A K LED G ++VLP+ GKVDL+A++++L + INEL +EAG LN AL+
Sbjct: 247 AQTSKEKIHRLEDTGAHIVVLPDLAGKVDLKAMMVKLAELGINELLVEAGPVLNGALVTA 306
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
G VDE++ Y +P L+G A M LP L +K L+ +I+KIG D+R++ARF
Sbjct: 307 GLVDEIIFYFAPSLLGNSAQAMLALPEIGDLSEKYDLQISDIRKIGMDVRLIARF 361
>gi|410421794|ref|YP_006902243.1| riboflavin biosynthesis protein
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica MO149]
gi|408449089|emb|CCJ60776.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica MO149]
Length = 374
Score = 332 bits (851), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 162/341 (47%), Positives = 236/341 (69%), Gaps = 2/341 (0%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+++PNPRVGCVIV++ +++ G T+ PGG HAE+ AL AAA+G + +TVY+TLEPCS
Sbjct: 14 STAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAARGASLAGATVYVTLEPCS 73
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC +AL+ + +V++A+ DPNP V+G+G+A+L +AGI+V + + + EA E+N
Sbjct: 74 HFGRTPPCVDALVAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVTEDVCRDEALELNA 133
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF +RM RG+PWV +K+A+SLD +++L+N SQWIT + +R D H WRARS +LTG+GT
Sbjct: 134 GFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWITGEAARADGHHWRARSGVVLTGMGT 193
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILED 251
VLKD+P+LN R+++TSH P + VID I R+ G IFTA K + + D
Sbjct: 194 VLKDDPQLNARAVQTSHPPRKAVIDGRFEIPEDARLFDDGAQVLIFTARSDAAKARRMAD 253
Query: 252 LGHEVIVLPN-NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
VI LP +VDL AV+ L ++INE+H+EAG L+ AL+ E CVDELL+Y++P
Sbjct: 254 RNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSGALLAEDCVDELLVYLAP 313
Query: 311 ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+L+G+A M LP LD + +F E+ +G D+R+ AR
Sbjct: 314 VLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGTDVRLRAR 354
>gi|427825169|ref|ZP_18992231.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica Bbr77]
gi|410590434|emb|CCN05521.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica Bbr77]
Length = 374
Score = 332 bits (851), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/341 (47%), Positives = 236/341 (69%), Gaps = 2/341 (0%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+++PNPRVGCVIV++ +++ G T+ PGG HAE+ AL AAA+G + +TVY+TLEPCS
Sbjct: 14 STAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAARGASLVGATVYVTLEPCS 73
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC +AL+ + +V++A+ DPNP V+G+G+A+L +AGI+V + + + EA E+N
Sbjct: 74 HFGRTPPCVDALVAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVTEDVCRDEALELNA 133
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF +RM RG+PWV +K+A+SLD +++L+N SQWIT + +R D H WRARS +LTG+GT
Sbjct: 134 GFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWITGEAARADGHHWRARSGVVLTGMGT 193
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILED 251
VLKD+P+LN R+++TSH P + VID I R+ G IFTA K + + D
Sbjct: 194 VLKDDPQLNARAVQTSHPPRKAVIDGRFEIPEDARLFDDGAQVLIFTARSDAAKARRMAD 253
Query: 252 LGHEVIVLPN-NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
VI LP +VDL AV+ L ++INE+H+EAG L+ AL+ E CVDELL+Y++P
Sbjct: 254 RNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSGALLAEDCVDELLVYLAP 313
Query: 311 ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+L+G+A M LP LD + +F E+ +G D+R+ AR
Sbjct: 314 VLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGTDVRLRAR 354
>gi|33593884|ref|NP_881528.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella pertussis Tohama I]
gi|384205189|ref|YP_005590928.1| putative riboflavin-specific deaminase [Bordetella pertussis CS]
gi|408416658|ref|YP_006627365.1| riboflavin-specific deaminase [Bordetella pertussis 18323]
gi|33563958|emb|CAE43220.1| putative riboflavin-specific deaminase [Bordetella pertussis Tohama
I]
gi|332383303|gb|AEE68150.1| putative riboflavin-specific deaminase [Bordetella pertussis CS]
gi|401778828|emb|CCJ64284.1| putative riboflavin-specific deaminase [Bordetella pertussis 18323]
Length = 386
Score = 332 bits (850), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 162/341 (47%), Positives = 236/341 (69%), Gaps = 2/341 (0%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+++PNPRVGCVIV++ +++ G T+ PGG HAE+ AL AAA+G + +TVY+TLEPCS
Sbjct: 26 STAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAARGASLAGATVYVTLEPCS 85
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC +AL+ + +V++A+ DPNP V+G+G+A+L +AGI+V + + + EA E+N
Sbjct: 86 HFGRTPPCVDALVAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVTEDVCRDEALELNA 145
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF +RM RG+PWV +K+A+SLD +++L+N SQWIT + +R D H WRARS +LTG+GT
Sbjct: 146 GFAARMSRGLPWVWLKLATSLDGRSALHNGVSQWITGEAARADGHHWRARSGVVLTGMGT 205
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILED 251
VLKD+P+LN R+++TSH P + VID I R+ G IFTA K + + D
Sbjct: 206 VLKDDPQLNARAVQTSHPPRKAVIDGRFEIPEDARLFDDGAQVLIFTARSDAAKARRMAD 265
Query: 252 LGHEVIVLPN-NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
VI LP +VDL AV+ L ++INE+H+EAG L+ AL+ E CVDELL+Y++P
Sbjct: 266 RNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSGALLAEDCVDELLVYLAP 325
Query: 311 ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+L+G+A M LP LD + +F E+ +G D+R+ AR
Sbjct: 326 VLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGTDVRLRAR 366
>gi|33603318|ref|NP_890878.1| riboflavin biosynthesis protein
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica RB50]
gi|410474414|ref|YP_006897695.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase RibD
[Bordetella parapertussis Bpp5]
gi|412341359|ref|YP_006970114.1| riboflavin biosynthesis protein
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica 253]
gi|427816328|ref|ZP_18983392.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica 1289]
gi|33577442|emb|CAE34707.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica RB50]
gi|408444524|emb|CCJ51278.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase]
[Bordetella parapertussis Bpp5]
gi|408771193|emb|CCJ55992.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica 253]
gi|410567328|emb|CCN24899.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella bronchiseptica 1289]
Length = 374
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 161/341 (47%), Positives = 235/341 (68%), Gaps = 2/341 (0%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+++PNPRVGCVIV++ +++ G T+ PGG HAE+ AL AAA+G + +TVY+TLEPCS
Sbjct: 14 STAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAARGASLAGATVYVTLEPCS 73
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC +AL + +V++A+ DPNP V+G+G+A+L +AGI+V + + + EA E+N
Sbjct: 74 HFGRTPPCVDALAAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVTEDVCRDEALELNA 133
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF +RM RG+PWV +K+A+SLD +++L+N SQWIT + +R D H WRARS +LTG+GT
Sbjct: 134 GFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWITGEAARADGHHWRARSGVVLTGMGT 193
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILED 251
VLKD+P+LN R+++TSH P + VID I R+ G +FTA K + + D
Sbjct: 194 VLKDDPQLNARAVQTSHPPRKAVIDGRFEIPEDARLFDDGAQVLVFTARSDAAKARRMAD 253
Query: 252 LGHEVIVLPN-NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
VI LP +VDL AV+ L ++INE+H+EAG L+ AL+ E CVDELL+Y++P
Sbjct: 254 RNARVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSGALLAEDCVDELLVYLAP 313
Query: 311 ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+L+G+A M LP LD + +F E+ +G D+R+ AR
Sbjct: 314 VLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGTDVRLRAR 354
>gi|334131577|ref|ZP_08505339.1| Bifunctional riboflavin biosynthesis protein ribD
[Methyloversatilis universalis FAM5]
gi|333443050|gb|EGK71015.1| Bifunctional riboflavin biosynthesis protein ribD
[Methyloversatilis universalis FAM5]
Length = 366
Score = 331 bits (848), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 168/355 (47%), Positives = 239/355 (67%), Gaps = 7/355 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + +SPNPRVGCV+VKE RI+ G+ + G HAE+ AL A
Sbjct: 12 MARALKLAARGLWTTSPNPRVGCVLVKEGRIVGEGWHERAGEPHAEVHALRAAGEA---A 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNPLV+G G+A+L +AGI+
Sbjct: 69 RGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPLVAGNGLARLRAAGIATD 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF SRM RG PWVR+K AS+LD T+L N SQWIT +R D H W
Sbjct: 129 CGVLENEARELNIGFVSRMTRGKPWVRLKTASTLDGVTALENGVSQWITGPAARRDGHRW 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDP---FFRVLKGGGSCI 236
RAR+CA+L+GIGTV++D+P L VR + T QP RI++D+ L++ P F ++ +
Sbjct: 189 RARACAVLSGIGTVMEDDPSLTVREVDTPRQPLRIIVDARLQLTPQARLFADIERSPLLV 248
Query: 237 FTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
A+D K + L D G E++VLPN GKVDL A+ LG R +NE+H E+G++LN +L+
Sbjct: 249 VCASDDTPKARALRDAGAELLVLPNEGGKVDLPAMFQALGARGLNEVHAESGHKLNGSLM 308
Query: 297 LEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EGCVDELL+Y++P L+G +F L P +L ++I L +++ +G D R+LAR
Sbjct: 309 REGCVDELLMYLAPTLLGRGMGLFNLGPFDTLAQRIDLDIRDMRAVGRDWRVLAR 363
>gi|332286796|ref|YP_004418707.1| riboflavin-specific deaminase [Pusillimonas sp. T7-7]
gi|330430749|gb|AEC22083.1| putative riboflavin-specific deaminase [Pusillimonas sp. T7-7]
Length = 374
Score = 330 bits (847), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 150/338 (44%), Positives = 224/338 (66%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
++PNPRV C+IV++ R+++ G T+ GG HAEI AL AA +G D +TVY+TLEPCS+
Sbjct: 21 TAPNPRVACLIVRDGRLLAEGATRQAGGPHAEIVALRQAAERGIDTAGATVYVTLEPCSH 80
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
+G TPPC +ALI + +V+IA+ DPNPLV G+G+A+L + GI+V + +EA IN G
Sbjct: 81 YGRTPPCVDALIAARPARVVIAMGDPNPLVHGQGIAKLRATGIAVTTDICTEEALAINPG 140
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F +RM R PW+ +K+ASSLD + +L N SQWIT +R D H WRARSC +L+G+GTV
Sbjct: 141 FVARMTRKTPWLWLKLASSLDGRIALANGQSQWITGTAARADGHHWRARSCVVLSGVGTV 200
Query: 194 LKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLG 253
L D+P++NVR ++T+ P + ++D+ ++ R+ G + +FT P K L D
Sbjct: 201 LADDPQMNVRHVETARPPIKAIVDTRFQVMEQARIFDGTPTWVFTCVSDPEKVHRLADRN 260
Query: 254 HEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILI 313
+V+ LP G+VDL A++ LG+ INE+H+EAG +L+ AL+ C DELL+Y++P+L+
Sbjct: 261 VQVVELPAAAGRVDLHALMRWLGEHDINEVHVEAGARLSGALLQAQCTDELLVYMAPVLL 320
Query: 314 GEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
GE M + P L + + +F + PD+R+ AR
Sbjct: 321 GEGIGMARMEPLQQLAQAQRFEFIHTACVAPDVRLRAR 358
>gi|311103895|ref|YP_003976748.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans
A8]
gi|310758584|gb|ADP14033.1| riboflavin biosynthesis protein RibD [Achromobacter xylosoxidans
A8]
Length = 383
Score = 329 bits (844), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 166/351 (47%), Positives = 235/351 (66%), Gaps = 2/351 (0%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL Q + +++PNPRVGCVIV++ R++ G T+ PGG HAE+ AL + A+G V
Sbjct: 16 ALALAQTVM-YSTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEVCALRDVQARGESVEG 74
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T+Y+TLEPCS+FG TPPC +A++ + +V++AI DPNPLV+G+G+A+L AGI V G
Sbjct: 75 ATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGLARLRLAGIEVTTG 134
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
+ EA +N GF SRM RG+PWV +K+A+SLD +++L+N SQWIT E+R D H WRA
Sbjct: 135 VCGAEALAVNAGFISRMSRGLPWVWLKMAASLDGRSALHNGVSQWITGPEARADGHRWRA 194
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATD 241
R+C +LTG+GTVLKD+P+LNVR + T QP + V+D I R+ G IFTA +
Sbjct: 195 RACVVLTGMGTVLKDDPQLNVRGVDTPRQPRKAVVDGRFEIPEDARLFDGAEVIIFTARE 254
Query: 242 LPMKRKILEDLGHEVIVLPNN-LGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
K L+ V++LP G+VDL A+I L + + NE+H+EAG L+ AL+ GC
Sbjct: 255 DAAKTARLQAKNARVVLLPGEAAGRVDLPAMIRWLAQEQFNEVHVEAGAGLSGALVAAGC 314
Query: 301 VDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDELLLY++P+L+G+A M LP LD + +F E +G D+R+ R
Sbjct: 315 VDELLLYLAPVLLGDAAGMVRLPMLEHLDGARRYEFIETAPVGADLRVRTR 365
>gi|91776267|ref|YP_546023.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methylobacillus flagellatus KT]
gi|91710254|gb|ABE50182.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methylobacillus flagellatus KT]
Length = 377
Score = 329 bits (843), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 167/358 (46%), Positives = 237/358 (66%), Gaps = 10/358 (2%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL++A + ++SPNPRVGCVIVK+ +++ G G HAE+ AL A Q
Sbjct: 20 MNLALREAARGLYSTSPNPRVGCVIVKDGKVVGRGAHLRAGEPHAEVHALRMAGGQ---A 76
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+FG TPPC +AL+K+G+++V+ A+ DPNPLVSG G+ +L + GI V
Sbjct: 77 AGADAYVTLEPCSHFGRTPPCADALVKAGVRRVVAAMQDPNPLVSGSGLKRLSTHGIEVA 136
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA E+N GF SRM R PWVR KIA+SLD KT L N S+WIT +R W
Sbjct: 137 YGLLEHEARELNAGFISRMTRQRPWVRSKIAASLDGKTGLNNGQSKWITGPSARQHVQQW 196
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSI---KTSH--QPYRIVIDSYLRIDPFFRVLKGGGS 234
RA+SCAILTG+GTVL D+P L VR + + H QP+R+++DS LR P L+ G
Sbjct: 197 RAQSCAILTGVGTVLADDPMLTVRDVTLLQQRHGVQPWRVIVDSQLRTPPAAATLQAGRV 256
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
I A LP++ K L D G E+I +P G+VDL+A++ L +R+IN++ +EAG +LN +
Sbjct: 257 LIAHAASLPVQEKALRDAGAELIAMPGPSGRVDLEALLHALAQRQINDVMVEAGARLNGS 316
Query: 295 LILEGCVDELLLYISPILI-GEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
L+ G VDELLLY +P+L+ G A +MFT+P + +KI+L + +++G D + A+
Sbjct: 317 LLYGGLVDELLLYYAPVLLGGGARDMFTMPALQEMQQKIQLHALDFRQVGADWFVRAK 374
>gi|89901442|ref|YP_523913.1| riboflavin biosynthesis protein RibD [Rhodoferax ferrireducens
T118]
gi|89346179|gb|ABD70382.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Rhodoferax ferrireducens T118]
Length = 377
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 169/347 (48%), Positives = 226/347 (65%), Gaps = 12/347 (3%)
Query: 16 PNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYF 74
PNPRVGCV+ + + G+T+ GG HAEI AL +A A+G V +T Y+TLEPCS+
Sbjct: 25 PNPRVGCVMTDCRENTLGQGHTQRTGGAHAEIVALRDAKARGNSVVGATAYVTLEPCSHH 84
Query: 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK----QGLMQKEAYEI 130
G T PC +ALI +GIKKV+ +I DPNPLVSG+G +L +AG+ V+ + + E+
Sbjct: 85 GRTGPCCDALIAAGIKKVVASIADPNPLVSGQGFERLRAAGVEVEVMPADDPLAIASREL 144
Query: 131 NIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGI 190
NIGFFSRM R PWVR+K+A+SLD K++L N SQWITS+ +R D H WRAR+CA+LTGI
Sbjct: 145 NIGFFSRMIRKTPWVRLKMAASLDGKSALENGVSQWITSEAARTDGHAWRARACAVLTGI 204
Query: 191 GTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCI--FTATDLPMKRKI 248
GTVL DNPRL+VR + T QP+ +++DS L P L G I + A K+
Sbjct: 205 GTVLTDNPRLDVRLVDTPRQPHLVIVDSRLET-PLDAALFTPGRVIYLYAAVQNEAKKAA 263
Query: 249 LEDLGHEVIVLPN----NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDEL 304
LE G VI P KVDL A++ +L R+INELH+EAG++LN + I EG VDE
Sbjct: 264 LETRGATVIYAPGLEPATRNKVDLAAMLRDLAAREINELHVEAGHKLNGSFIREGLVDEY 323
Query: 305 LLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
L+Y++P+LIG M P L+ + L+FH I+ +G D+RILAR
Sbjct: 324 LVYLAPMLIGLGSGMANFGPITQLEDAVNLRFHSIEPVGDDLRILAR 370
>gi|33598380|ref|NP_886023.1| riboflavin biosynthesis protein ribd [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Bordetella parapertussis 12822]
gi|33574509|emb|CAE39154.1| putative riboflavin-specific deaminase [Bordetella parapertussis]
Length = 386
Score = 328 bits (842), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 160/341 (46%), Positives = 235/341 (68%), Gaps = 2/341 (0%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+++PNPRVGCVIV++ +++ G T+ PGG HAE+ AL AAA+G + +TVY+TLEPCS
Sbjct: 26 STAPNPRVGCVIVRDGQVLGEGATQPPGGPHAEVCALREAAARGASLAGATVYVTLEPCS 85
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC +AL + +V++A+ DPNP V+G+G+A+L +AGI+V + + + EA E+N
Sbjct: 86 HFGRTPPCVDALAAAAPARVVVAMGDPNPRVNGQGLARLRAAGIAVTEDVCRDEALELNA 145
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF +RM RG+PWV +K+A+SLD +++L+N SQW+T + +R D H WRARS +LTG+GT
Sbjct: 146 GFAARMSRGLPWVWLKLAASLDGRSALHNGVSQWMTGEAARADGHHWRARSGVVLTGMGT 205
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILED 251
VLKD+P+LN R+++TSH P + VID I R+ G +FTA K + + D
Sbjct: 206 VLKDDPQLNARAVQTSHPPRKAVIDGRFEIPEDARLFDDGAQVLVFTARSDAAKARRMAD 265
Query: 252 LGHEVIVLPN-NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
VI LP +VDL AV+ L ++INE+H+EAG L+ AL+ E CVDELL+Y++P
Sbjct: 266 RNVRVIELPGVRPDRVDLPAVMRWLASQEINEVHVEAGAGLSGALLAEDCVDELLVYLAP 325
Query: 311 ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+L+G+A M LP LD + +F E+ +G D+R+ AR
Sbjct: 326 VLLGDAAGMVRLPLLEHLDGARRFEFAELAPVGTDVRLRAR 366
>gi|171463092|ref|YP_001797205.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171192630|gb|ACB43591.1| riboflavin biosynthesis protein RibD [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 372
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 168/357 (47%), Positives = 238/357 (66%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL +A+ ++ S+PNPRVGCVI KE +II G+T++ G HAE+ AL +A A+G D
Sbjct: 10 MSEALSEAQKALYLSNPNPRVGCVIAKEGKIIGRGFTQAAGKAHAEVQALADAKARGNDA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST+Y+TLEPCS+ G TPPC +ALI + KVI+A++DPNPLV+G+G+ +L AGI V+
Sbjct: 70 TGSTIYVTLEPCSHTGKTPPCVDALIAAKPSKVIVAMSDPNPLVAGQGLEKLKLAGIEVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM+ EA +N GF SRM RG+PWVRMKIA+SLD KT+L + SQWIT +R D H W
Sbjct: 130 YGLMESEAQLLNRGFVSRMTRGLPWVRMKIAASLDGKTALPDGRSQWITGPLARADGHHW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKG---GGSCI 236
RA++CAI+TG+GTV +D+P LNVR ++T QP R +IDS L ++LK I
Sbjct: 190 RAQACAIVTGVGTVKEDDPSLNVREVETRRQPVRTIIDSKLETPINAKILKNPELSDILI 249
Query: 237 FTA----TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGK-RKINELHIEAGYQL 291
A +++ K K E G +VI + N GKVDL + L K R++NE+HIEAG++L
Sbjct: 250 VCANLDKSEMQAKAKAFEARGIQVIAMANAFGKVDLPCLFSYLAKEREMNEIHIEAGFKL 309
Query: 292 NTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
N +++ E C+DELLLY +P L+G+ M + L ++ + + +G D+R+
Sbjct: 310 NDSMLREDCIDELLLYYAPFLMGDGIGMANVSLLNDLGQRQNWQIIDQALLGSDLRL 366
>gi|421485764|ref|ZP_15933319.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii HLE]
gi|400196076|gb|EJO29057.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii HLE]
Length = 383
Score = 328 bits (841), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 165/351 (47%), Positives = 235/351 (66%), Gaps = 2/351 (0%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + ++ ++PNPRVGCVIV++ R++ G T+ PGG HAEI AL +A + V
Sbjct: 16 ALALAE-RVLFTTAPNPRVGCVIVRDGRVLGEGATQPPGGPHAEICALRDAQHRNEPVEG 74
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T+Y+TLEPCS+FG TPPC +A++ + +V++AI DPNPLV+G+G+A+L AGI V G
Sbjct: 75 ATMYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGLARLREAGIEVVTG 134
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
+ +EA +N GF SRM RG+PWV MK+A+SLD +++L+N SQWIT E+R D H WRA
Sbjct: 135 VCAEEALAVNAGFISRMSRGLPWVWMKMAASLDGRSALHNGMSQWITGPEARADGHHWRA 194
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATD 241
RSC +LTG+GTVLKD+P+LNVR + T QP + V+D I R+ G +FTA +
Sbjct: 195 RSCVVLTGMGTVLKDDPQLNVRGVDTPRQPRKAVVDGRFEIPEGARLFDGAEVIVFTARE 254
Query: 242 LPMKRKILEDLGHEVIVLPNNL-GKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
K L D V+VLP +VDL A++ + + NE+H+EAG L+ AL+ GC
Sbjct: 255 DAAKAARLADKNARVVVLPAQAPDRVDLPAMMRWFAQEQFNEVHVEAGAGLSGALVAAGC 314
Query: 301 VDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDELLLY++P+L+G+A M LP LD + +F + ++G D+R+ AR
Sbjct: 315 VDELLLYLAPVLLGDAAGMVRLPMLEHLDAAQRYEFIDAARLGADMRLRAR 365
>gi|319941823|ref|ZP_08016145.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Sutterella wadsworthensis 3_1_45B]
gi|319804756|gb|EFW01623.1| AMP deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Sutterella wadsworthensis 3_1_45B]
Length = 415
Score = 326 bits (836), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 160/356 (44%), Positives = 223/356 (62%), Gaps = 5/356 (1%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL QA+ + S PNP VG VIV+ R++ G+T+ GG HAE+ AL +A +G V
Sbjct: 59 MDLALAQARKAWRISPPNPSVGAVIVRNGRLVGAGHTQRTGGPHAEVMALRSAFERGLSV 118
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS++G TPPC ALI+S + +V+ A+ DPNP V G+G+ L+ AGI +
Sbjct: 119 EGATVYVTLEPCSHYGRTPPCALALIQSKVGRVVAAVGDPNPKVHGRGIRMLLEAGIPAE 178
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ + EA E+NI F +RM RG PWVRMK A +LD +T+ + SQWIT + +R D W
Sbjct: 179 LGVREAEAREVNIAFLTRMTRGTPWVRMKTAVTLDGRTAFPDGRSQWITGEAARADVQFW 238
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVL--KGGGSCIF 237
R R+ A+LTGIGTVL D+P++NVR QP RIVID + P ++L KGG I
Sbjct: 239 RGRAGAVLTGIGTVLADDPQMNVRLPDQERQPLRIVIDPRMETPPAGKLLTSKGGKVFIA 298
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
A + P +R LE G EV VLP+ G+VDL+ ++ EL KR++NE+H+EAG +L+ AL
Sbjct: 299 AAAEYPTRRAALEAAGAEVWVLPDAAVPGRVDLRELMRELAKREVNEVHVEAGPRLSGAL 358
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G +DE+L Y +P L G +P + + + +IG D R+L R
Sbjct: 359 FAAGLIDEMLFYYAPCLFGAGMGPAAVPLPAEPGAAYRWRLQSLDQIGGDFRVLLR 414
>gi|293603326|ref|ZP_06685754.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii ATCC
43553]
gi|292818236|gb|EFF77289.1| riboflavin biosynthesis protein RibD [Achromobacter piechaudii ATCC
43553]
Length = 383
Score = 325 bits (833), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 163/351 (46%), Positives = 238/351 (67%), Gaps = 2/351 (0%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL ++ L ++PNPRVGCVIV++ R++ G T+ PGG HAEI AL +A ++ V
Sbjct: 16 ALALAESVL-YTTAPNPRVGCVIVRDGRMLGEGATQPPGGPHAEIRALRDAESRQEAVEG 74
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T+Y+TLEPCS+FG TPPC +A++ + +V++AI DPNPLV+G+G+A+L +AGI V G
Sbjct: 75 ATLYVTLEPCSHFGRTPPCVDAVLAARPARVVVAIGDPNPLVNGQGLARLRAAGIQVTTG 134
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
+ ++EA +N GF SRM RG+PWV MK+A+SLD +++L+N SQWIT E+R D H WRA
Sbjct: 135 VCEQEALALNAGFISRMSRGLPWVWMKMAASLDGRSALHNGMSQWITGPEARADGHHWRA 194
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATD 241
RSC +LTG+GT+LKD+P LNVR ++T QP + V+D I R+ G +FTA +
Sbjct: 195 RSCVVLTGMGTILKDDPLLNVRGVQTPRQPRKAVVDGLFVIPEDARLFDGAQVIVFTARE 254
Query: 242 LPMKRKILEDLGHEVIVLPNNL-GKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
K L + V+ +P + G+VDL A++ + + NE+H+EAG L+ AL+ GC
Sbjct: 255 DAEKAARLAEKNARVVYMPGSAPGRVDLAAMMRWFAEAEFNEVHVEAGAGLSGALVAAGC 314
Query: 301 VDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDELLLY++P+L+G+A M LP LD + +F + +G D+R+ AR
Sbjct: 315 VDELLLYLAPVLLGDAAGMVRLPMLEHLDAARRYEFIDSTLVGADVRLRAR 365
>gi|114331089|ref|YP_747311.1| riboflavin biosynthesis protein RibD [Nitrosomonas eutropha C91]
gi|114308103|gb|ABI59346.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Nitrosomonas eutropha C91]
Length = 367
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 171/355 (48%), Positives = 237/355 (66%), Gaps = 6/355 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ ALQ A+ + +SPNPRVGCVIV + +++ G+ + G +HAEI+AL A G
Sbjct: 14 MSHALQLAERGLFTTSPNPRVGCVIVNDGKVVGTGWHERVGESHAEINALREA---GDLA 70
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC EALI + + +VI+A++DPNP V+G+G +L AG+ V+
Sbjct: 71 RGATVYVTLEPCSHHGRTPPCVEALICAEVCRVIMAMDDPNPHVNGQGKEKLQKAGVEVQ 130
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA ++NIGF +RM PW+R KIA+SLD + +L N SQWIT + +R D H W
Sbjct: 131 TGLLEDEAQQLNIGFITRMHHSRPWIRTKIAASLDGRIALKNGKSQWITGEPARQDGHRW 190
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFT 238
RARSCAILTG+ +V D+P L VR I+TS QP RIV+DS L I ++L+ + IFT
Sbjct: 191 RARSCAILTGVNSVKVDDPLLTVRYIETSRQPIRIVLDSNLEIPLQAKLLENADTTWIFT 250
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
K +LED G V+VLP+ GKVDL+A+I +L + INEL +EAG LN AL+
Sbjct: 251 VQADRGKIHLLEDAGAHVVVLPDLAGKVDLKAMITKLAELGINELLVEAGPVLNGALVAA 310
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+DE++ Y +P L+G A M LP L +K L+ +I+KIG DIR++ARF
Sbjct: 311 ELIDEIIFYFAPNLLGNSAQAMLVLPEITDLSEKYNLQITDIRKIGIDIRLVARF 365
>gi|424778325|ref|ZP_18205275.1| riboflavin-specific deaminase [Alcaligenes sp. HPC1271]
gi|422886864|gb|EKU29276.1| riboflavin-specific deaminase [Alcaligenes sp. HPC1271]
Length = 382
Score = 324 bits (831), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 156/352 (44%), Positives = 237/352 (67%), Gaps = 1/352 (0%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ S+ S+PNPRV C+IV++ ++++ G T+ GG HAE+ AL A +G V
Sbjct: 10 MRQALELAEKSLYISAPNPRVACLIVRDGQLLASGSTQQAGGPHAEVMALRQAKERGVSV 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALIK+G +V+ ++ DPNPLV+G GV++L AGI+V
Sbjct: 70 AGATFYVTLEPCSHHGRTPPCADALIKAGAGRVVFSMYDPNPLVAGNGVSRLRQAGITVD 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
L ++A IN GFF+RM RG PW+ MK+A+SLD +++L + SQWIT ++R+D H W
Sbjct: 130 GPLCVEQALAINAGFFARMTRGRPWLWMKMAASLDGRSALPDGRSQWITGPQARDDGHHW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RARSC +LTGIGTV DNP +NVR++ T P + V+D++LR+DP +L G +F+
Sbjct: 190 RARSCVVLTGIGTVHADNPLMNVRAVSTPRPPIKAVLDTHLRMDPKAALLDGTPCWVFSH 249
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P L D +VI +P + G+VD++AV+ + ++INE+H EAG +L+ ALI G
Sbjct: 250 RRDPELEAELADRNAQVIPMPLHEGQVDVRAVLDWMTDQQINEVHAEAGARLSGALIDAG 309
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VD+LL+Y++P ++G+ + + LD +F +++ +G D+R+LAR
Sbjct: 310 VVDQLLMYLAPKILGQGRGVADITELAGLDDVEPFEFTDVRLLGADLRVLAR 361
>gi|339481683|ref|YP_004693469.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. Is79A3]
gi|338803828|gb|AEJ00070.1| riboflavin biosynthesis protein RibD [Nitrosomonas sp. Is79A3]
Length = 363
Score = 324 bits (830), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 175/356 (49%), Positives = 245/356 (68%), Gaps = 7/356 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A+ + +++PNPRVGCV+V+ ++I+ G+ + G HAEI+AL NA A
Sbjct: 10 MSHALRLAEKGLYSTAPNPRVGCVLVRNEQIVGSGWHEKAGRPHAEINALNNAKAA---A 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC +FG TPPC ALI +GI VIIA+ DPNP+VSG+G A L +GI+V+
Sbjct: 67 RGATAYVTLEPCGHFGRTPPCVSALIAAGIANVIIAMEDPNPIVSGRGKALLEQSGIAVQ 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N+GF +RM PWVR+K A SLD KT+L N SQWIT + +R D H W
Sbjct: 127 TGLLEAEARALNVGFIARMVDKKPWVRLKTAVSLDGKTALKNGVSQWITGEAARQDGHRW 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKG-GGSCIFT 238
RARSCAI+TGIGTV DNP+L VR I+T QP +I++DS+L I ++L+G G IFT
Sbjct: 187 RARSCAIMTGIGTVKLDNPQLTVRHIETRRQPKKIIVDSHLAIPLDAKLLQGEEGIFIFT 246
Query: 239 ATDL-PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A D P K +L LG VIVLPN G+VDL+ +++ L +NE+ +EAG LN ALI
Sbjct: 247 ANDGNPEKNAVLSKLGIRVIVLPNAEGRVDLKRMMMTLADFGMNEVLVEAGSVLNGALIE 306
Query: 298 EGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
G +DE++++++P L+G +A M LP +L +K LK ++++ +G DIRI+ARF
Sbjct: 307 AGLIDEMIIFLAPHLLGDDAQGMVQLPEFTNLGQKKTLKINDLRMVGQDIRIIARF 362
>gi|393758869|ref|ZP_10347688.1| riboflavin-specific deaminase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
gi|393162765|gb|EJC62820.1| riboflavin-specific deaminase [Alcaligenes faecalis subsp. faecalis
NCIB 8687]
Length = 382
Score = 323 bits (827), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 154/352 (43%), Positives = 239/352 (67%), Gaps = 1/352 (0%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ S+ S+PNPRV C+IV++ ++++ G T+ GG HAE+ AL AA +G +V
Sbjct: 10 MRQALKLAEQSLYISAPNPRVACLIVRDGQLLASGSTQQAGGPHAEVMALRQAAERGVNV 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+K+G +V+ ++ DPNPLV+G GV++L AGISV
Sbjct: 70 AGATFYVTLEPCSHHGRTPPCADALVKAGAGRVVFSMYDPNPLVAGNGVSRLRQAGISVD 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+ ++A IN GFF+RM R PW+ MK+A+SLD +++L + SQWIT ++R+D H W
Sbjct: 130 GPVCVEQALAINAGFFARMTRARPWLWMKMAASLDGRSALPDGRSQWITGPQARDDGHHW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RARSC +LTGIGTV DNP +NVR++ T P + V+D++LR+DP +L G +F+
Sbjct: 190 RARSCVVLTGIGTVNADNPLMNVRAVSTPRPPIKAVLDTHLRLDPKAALLDGTLCWVFSH 249
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P + L D +VI +P + G+VD+ A++ + +++INE+H EAG +L+ ALI G
Sbjct: 250 RRDPEREAELADRNAQVIPMPLHEGQVDVCAILDWMAEQQINEVHAEAGARLSGALIDAG 309
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VD+LL+Y++P ++G+ + + L+ +F +++ +G D+RILAR
Sbjct: 310 VVDQLLMYLAPKILGQGRGVADITALSGLEDVEPFEFTDVRLLGADLRILAR 361
>gi|187479427|ref|YP_787452.1| riboflavin biosynthesis protein [includes
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bordetella avium 197N]
gi|115424014|emb|CAJ50567.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bordetella avium 197N]
Length = 371
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 154/340 (45%), Positives = 230/340 (67%), Gaps = 1/340 (0%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIV++ +I+ G T+ PGG HAE+ AL A A G+D+ +TVY+TLEPCS
Sbjct: 14 TTTPNPRVGCVIVRDGQILGEGATQPPGGGHAEVMALRAARAAGHDLAGATVYVTLEPCS 73
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC +AL+ + +V++A+ DPNP VSG+G A+L +AG+ V G+ ++EA +N
Sbjct: 74 HFGRTPPCVDALVAAAPARVVVALGDPNPRVSGQGFARLRAAGVEVSSGVCEEEALALNP 133
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF +RM RG PW+ +K+A+SLD +++L+N SQWIT + +R D H WRAR+ +LTG+GT
Sbjct: 134 GFVARMSRGTPWLWLKLAASLDGRSALHNGLSQWITGEAARADGHAWRARADLVLTGLGT 193
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDL 252
++ D+P+LNVR++ T QP R V+D R+ R+ G +FTA K + L
Sbjct: 194 IVHDDPQLNVRAVSTPRQPRRGVVDGQFRVPEDARLFDGEPVWVFTARQDHAKAERLASR 253
Query: 253 GHEVIVLPNNLGK-VDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPI 311
EV+ LP+ G+ VDL ++ LG + NE+H+EAG L+ AL+ CVDELL+Y++P+
Sbjct: 254 NVEVVCLPDASGEHVDLPGMMRWLGAHECNEVHVEAGAGLSGALLAADCVDELLVYLAPV 313
Query: 312 LIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
L+G+A M LP LD + F ++ ++G D+R+ AR
Sbjct: 314 LLGDAAGMVRLPVLERLDAARRYAFTDLVRVGEDVRLQAR 353
>gi|389871295|ref|YP_006378714.1| riboflavin-specific deaminase [Advenella kashmirensis WT001]
gi|388536544|gb|AFK61732.1| riboflavin-specific deaminase [Advenella kashmirensis WT001]
Length = 378
Score = 321 bits (823), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 165/353 (46%), Positives = 223/353 (63%), Gaps = 1/353 (0%)
Query: 1 MTLALQQAK-LSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+ + ++SPNPRVGCVIV + RI+ G T+ PGG HAE+ A+ +A A+G+ +
Sbjct: 7 MDRALALARSVMFSTSPNPRVGCVIVNQDRILGEGATQPPGGPHAEVCAIRDAQAKGHAL 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST Y+TLEPCS++G TPPC +AL+ +V++A DPNPLVSG G+ +L AGI+V+
Sbjct: 67 AGSTFYVTLEPCSHYGRTPPCVDALLAVKPARVVVAATDPNPLVSGAGIEKLQDAGITVE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL ++A EIN GF SRM PWVR+KIASSLD K +L N SQWIT ++R D H W
Sbjct: 127 IGLGLEQALEINPGFVSRMSIQRPWVRVKIASSLDGKVALNNGRSQWITGGQARADGHHW 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+C ILTG GTV D+P+L VR + T +P R VIDS ID R+ G IF
Sbjct: 187 RARACVILTGSGTVRDDDPQLTVRDVHTPRKPIRAVIDSQFAIDEEARLFDGDPVWIFVT 246
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
K + L VI + VDL+AV+ LG++ INE+H+EAG LN AL+ G
Sbjct: 247 EYNVAKAERLAARNVRVITINEKNKHVDLKAVMAWLGQQDINEVHVEAGPGLNGALLQSG 306
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
CVDELL+Y++P ++G+A + P L + +F + G D+R+ AR
Sbjct: 307 CVDELLVYVAPTILGDARSAVAHTPFNVLADAYRFEFFDTAACGKDMRLRARL 359
>gi|167619029|ref|ZP_02387660.1| riboflavin biosynthesis protein RibD [Burkholderia thailandensis
Bt4]
Length = 306
Score = 320 bits (819), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 151/283 (53%), Positives = 202/283 (71%), Gaps = 3/283 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A A+G D+ ++TVY+TLEPCS
Sbjct: 23 TTTPNPRVGCVIVKDDVVIGEGFTQPAGQDHAEVQALKDARARGNDLRDATVYVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC ALI + + KV+ A+ DPNP VSG+G+A L AGI V+ GL+ EA+E+NI
Sbjct: 83 HFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVRCGLLAHEAHEMNI 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM RG PWVRMK A+SLD +T+L + S+WIT +R+D H WRAR+CAILTGIGT
Sbjct: 143 GFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKWRARACAILTGIGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA---TDLPMKRKIL 249
V +D+P+LNVR + T QP R++IDS L I R+L+GG IF + + L
Sbjct: 203 VREDDPQLNVRGVDTPRQPRRVLIDSRLDIPLTARLLEGGSLLIFCGALDAQSEARAQAL 262
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLN 292
G E++ L N GKVDL A++ LG+R INELH+EAG++LN
Sbjct: 263 RARGAEIVPLANVRGKVDLPAMLAALGERGINELHVEAGHKLN 305
>gi|406973336|gb|EKD96804.1| hypothetical protein ACD_23C01247G0001 [uncultured bacterium]
Length = 313
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 152/307 (49%), Positives = 216/307 (70%), Gaps = 3/307 (0%)
Query: 48 ALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKG 107
AL +AA +G+ V +TVY+TLEPCS+ G T PC +ALIK+G+ KV+ AI DPNPLV G+G
Sbjct: 2 ALRDAALRGHSVEGATVYVTLEPCSHQGRTGPCCDALIKAGVAKVVAAIPDPNPLVGGQG 61
Query: 108 VAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWI 167
A+L + G+SV+ G + E+N+GFFSRM R PWVRMK+A+SLD T+L N SSQWI
Sbjct: 62 FARLRARGVSVEIGPGATASRELNLGFFSRMVRKTPWVRMKVAASLDGVTALQNGSSQWI 121
Query: 168 TSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLR--IDPF 225
T +R D H WRAR+CA+LTGIGTVL D+PRL+VR+++T QP +V+DS L+ +D
Sbjct: 122 TGPSARADGHAWRARACAVLTGIGTVLADDPRLDVRAVETDRQPRLVVVDSALQTPLDAS 181
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
L I+ + KR+ LE+ G V+V+P++ GKVDL A++ +L R+INELH+
Sbjct: 182 L-FLADRALYIYAGAENSEKRRALEERGATVVVMPDSRGKVDLVAMMRDLACREINELHV 240
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +LN +L+ +G VDELL+Y++P L+GE + + P + + L+FH ++++G D
Sbjct: 241 EAGSKLNGSLLRDGLVDELLVYLAPKLMGEGLGLAHMAPLADISQAYALEFHSVERVGED 300
Query: 346 IRILARF 352
+RILAR
Sbjct: 301 LRILARL 307
>gi|452127315|ref|ZP_21939898.1| riboflavin biosynthesis protein [Bordetella holmesii F627]
gi|452130686|ref|ZP_21943258.1| riboflavin biosynthesis protein [Bordetella holmesii H558]
gi|451920611|gb|EMD70757.1| riboflavin biosynthesis protein [Bordetella holmesii H558]
gi|451922410|gb|EMD72555.1| riboflavin biosynthesis protein [Bordetella holmesii F627]
Length = 424
Score = 319 bits (817), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 153/353 (43%), Positives = 238/353 (67%), Gaps = 2/353 (0%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ I +SPNPRVGCVIV++ +++ G T+ GG HAE+ AL A A G+D+
Sbjct: 54 MRRALELARGVIYTTSPNPRVGCVIVRDGQVLGEGATQPAGGPHAEVMALRAAQAGGHDL 113
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TV++TLEPCS++G TPPC +AL+ + +V++A+ DPNP V+G+G A+L +AGI+V
Sbjct: 114 AGATVFVTLEPCSHYGRTPPCVDALVAAAPARVVVALGDPNPRVAGQGFARLRAAGIAVT 173
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ ++EA +N GF +RM R PW+ +K+A+SLD +++L+N SQWIT + +R D H W
Sbjct: 174 SGICEQEALALNAGFVARMSRATPWLWLKLAASLDGRSALHNGVSQWITGEAARADGHAW 233
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+ +LTG+GTVLKD+P+L VR+++T QP + V+D ++ R+ G + +FTA
Sbjct: 234 RARADVVLTGMGTVLKDDPQLTVRAVQTPRQPRKAVVDGRFQVPEHARLFDGTPAWVFTA 293
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLG-KVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
K L D EV+ LP+ G +VDL A++ L + NE+H+EAG L+ AL+
Sbjct: 294 IRDDAKAARLADKNVEVVCLPDAGGQRVDLAAMMRWLAAQDCNEVHVEAGAGLSGALLAA 353
Query: 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
CVDELL+Y++P+++ +A M +P LD + +F ++ ++G D+R+ AR
Sbjct: 354 DCVDELLVYLAPVMLSDAAGMVQMPMLEHLDAARRFRFTDLVRVGEDVRLQAR 406
>gi|451936682|ref|YP_007460536.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777605|gb|AGF48580.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 383
Score = 319 bits (817), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 164/351 (46%), Positives = 227/351 (64%), Gaps = 3/351 (0%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K S N++PNP VGC+IVK+ + I G T++ GG HAE+ AL+++ ++V
Sbjct: 14 MREALKLADKASYNTAPNPSVGCIIVKDGKCIGMGATRAAGGFHAEVCALIDSKKNNHNV 73
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST YITLEPCS++G TPPC + +IKS +V++++ DPNPLVSG G+ +L S+GI V
Sbjct: 74 VGSTFYITLEPCSHYGKTPPCVDQIIKSSPIRVVLSMIDPNPLVSGNGIKKLRSSGIDVL 133
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ KEA +NIGFF RM PWVR+K ASS+D +T+LYN+ S+WIT ESR D H W
Sbjct: 134 IGVCHKEALLLNIGFFHRMIYSTPWVRLKTASSIDGRTALYNHKSKWITCDESRKDGHHW 193
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RARS ILTGIGT+L DNP LNVR + T QPYR VID I ++ G IFT+
Sbjct: 194 RARSSVILTGIGTILHDNPLLNVRYVDTPRQPYRAVIDDNFVIREDANIIDGSKVFIFTS 253
Query: 240 TDLPMKRKILEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
K K L D EVI+LPN VDL V+ ++ NE+H+E+G LN L+
Sbjct: 254 IVDKEKEKRLSDRNVEVILLPNEKVPNHVDLSLVMRFFAEKCFNEVHVESGAGLNGKLLS 313
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
E C++EL++Y++PI +G+A+ + L +L+ ++ + IG D+RI
Sbjct: 314 ERCIEELIMYVAPIFLGDAFPIAKLKNISNLEDALRFSIFDSINIGSDLRI 364
>gi|332527289|ref|ZP_08403353.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Rubrivivax benzoatilyticus JA2]
gi|332111705|gb|EGJ11686.1| 5-amino-6-(5-phosphoribosylamino) uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Rubrivivax benzoatilyticus JA2]
Length = 370
Score = 318 bits (814), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 160/354 (45%), Positives = 227/354 (64%), Gaps = 5/354 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
LAL + + + + PNPRVGCVI + R++ G T+ G HAE+ AL +AAA G+D
Sbjct: 14 ALALAEGSIGL-TDPNPRVGCVIGHDDGRVLGRGATQRAGQAHAEVMALRDAAAAGHDTR 72
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
+T ++TLEPC++ G TPPC +AL+ +GI +V++A+ DP P V+G G+ +L +AG+ V+
Sbjct: 73 GATAWVTLEPCAHHGRTPPCCDALVAAGIARVVVAVGDPFPQVAGAGITRLRAAGVQVEL 132
Query: 121 GL--MQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
G + A E+NIGFFSR++RG PW+RMKIA+SLD +T+L N +SQWIT + +R D H
Sbjct: 133 GDEDIAAAARELNIGFFSRVERGRPWLRMKIAASLDGRTALPNGASQWITGEAARTDGHA 192
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IF 237
WR R+ +LTGIGTVL D+PRL+VR + T QP R V+DS LR+ RVL G C +F
Sbjct: 193 WRRRAGCVLTGIGTVLDDDPRLDVRRVPTVLQPMRAVMDSGLRLPAGARVLAPPGRCLVF 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
A L G E+ P G+VD AV+ +L +NELH+EAG +LN AL+
Sbjct: 253 HAAPASPAAAALTAAGAELHARPGTDGRVDAPAVLADLAALGVNELHVEAGARLNGALLA 312
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G VDELL+Y +P+L+GE M L P +L + + F + +G D+R+ R
Sbjct: 313 AGLVDELLVYTAPLLLGEGRPMAALGPFETLAQGHRYGFVDATPVGEDLRLRLR 366
>gi|319942892|ref|ZP_08017175.1| riboflavin biosynthesis protein RibD [Lautropia mirabilis ATCC
51599]
gi|319743434|gb|EFV95838.1| riboflavin biosynthesis protein RibD [Lautropia mirabilis ATCC
51599]
Length = 385
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 158/357 (44%), Positives = 227/357 (63%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+ A +N++ PNPRVGCVIV++ ++ G+ + G HAE+ AL A G
Sbjct: 10 MQRAIDLAWQGVNTTMPNPRVGCVIVRDGEVVGEGWHRRAGEPHAEVLALQQA---GERA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC + L+++G+ +V+ A+ DPNPLV+G+G+ +L +AGI V+
Sbjct: 67 RGATAYVTLEPCSHHGRTGPCADRLVEAGVARVVAAMEDPNPLVNGQGLGRLRAAGIDVR 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++EA +N GF SRMQRG PWVR+K A+SLD +L + SQWIT + +R D H W
Sbjct: 127 CGLLEEEARALNEGFISRMQRGRPWVRLKAATSLDGFIALPDGESQWITGEAARTDGHAW 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+ AILTG GTV DNP L VR + T QP R+++D+ L++ + G + + A
Sbjct: 187 RARASAILTGSGTVQADNPALTVRHVATERQPVRVLVDARLQVSEHAAIFGPGETWVAHA 246
Query: 240 T--DLP--MKRKILEDLGHEVIVLPNNLGK-VDLQAVIIELGKRKINELHIEAGYQLNTA 294
D P R+ L D G ++ LP G+ VDL A++ +G+ NE+H+EAG LN A
Sbjct: 247 MPPDWPDDGHRQRLLDRGVRLLYLPAADGRHVDLPALMRAMGEAGFNEVHVEAGAGLNAA 306
Query: 295 LILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
LI GCVDELLLY++P L+G+ F LP LD +I+L + E +G D+R+ R
Sbjct: 307 LIQAGCVDELLLYVAPALLGQGLPAFALPAVPGLDDRIRLAWREATPVGDDLRLRLR 363
>gi|124268129|ref|YP_001022133.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Methylibium petroleiphilum PM1]
gi|124260904|gb|ABM95898.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Methylibium petroleiphilum PM1]
Length = 377
Score = 317 bits (812), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 161/362 (44%), Positives = 236/362 (65%), Gaps = 13/362 (3%)
Query: 2 TLALQQAKLSIN-SSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
LAL+ A +I S PNPRVGCVI + R+++ G+T+ G HAE+ AL A A G+ V
Sbjct: 10 ALALRNANEAIGLSDPNPRVGCVITAPDGRLLASGHTQRAGSAHAEVSALRAAQAAGHTV 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
T ++TLEPCS+ G TPPC +AL+++G+ V++A+ DPNPLV+G G+ +L +AGI V
Sbjct: 70 RGGTAWVTLEPCSHHGRTPPCCDALVEAGVAHVMVALQDPNPLVAGHGIGRLRAAGIDVT 129
Query: 120 ----QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRND 175
+ A E+NIGF SRM R PWVR+KIA+SLD +T+L N SQWIT +R D
Sbjct: 130 VLAPGDPVAIAARELNIGFLSRMLRQRPWVRLKIAASLDGRTALDNGLSQWITGDAARTD 189
Query: 176 SHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS- 234
H +R R+ A+LTGIGTV+ D+PRL+VR + T QP R+V+DS L I R+L G
Sbjct: 190 GHAYRKRAGAVLTGIGTVIDDDPRLDVRLVDTVLQPCRVVVDSKLDIALDARILSPPGER 249
Query: 235 CIFTATDL-----PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGY 289
++TA+ L P R++ E G V+ N GKVDL A++ +L +R+INELH+EAG
Sbjct: 250 LVYTASALARHAAPKVRELAEQ-GVSVLACANADGKVDLGAMLDDLARREINELHVEAGS 308
Query: 290 QLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
+L+ + + G VDE L+Y++P+++G M P +L + + L+F ++++G D+R++
Sbjct: 309 KLSGSFVRAGLVDEFLVYLAPLMLGAGREMARFGPLTALTEGLALEFVSVERVGADLRLI 368
Query: 350 AR 351
AR
Sbjct: 369 AR 370
>gi|326318264|ref|YP_004235936.1| riboflavin biosynthesis protein RibD [Acidovorax avenae subsp.
avenae ATCC 19860]
gi|323375100|gb|ADX47369.1| riboflavin biosynthesis protein RibD [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 377
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 154/356 (43%), Positives = 229/356 (64%), Gaps = 4/356 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKR-IISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M LAL+ A+ + +SPNPRVGCV+V ++ II G T+ GG HAE+ AL +A A+G+
Sbjct: 15 MQLALRLAEEGLYRTSPNPRVGCVLVDARQQIIGQGSTQRAGGPHAEVMALRDARARGHA 74
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+ Y+TLEPCS+ G T PC +AL+++GI +V+ ++ DPNP V+G+G +L +AG+ V
Sbjct: 75 TQGAIAYVTLEPCSHHGRTGPCCDALVEAGIARVVASLGDPNPRVAGQGFERLRAAGVEV 134
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ G + + E+NIGF SRM R +PWVR+K A+SLD T+L + SQWITS +R D H
Sbjct: 135 EVGPGAEASRELNIGFLSRMVRRMPWVRLKSAASLDGITALPDGQSQWITSAAARADVHA 194
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS--CI 236
WRAR+CA+LTG+GTVL D+PRL+VR + T QP+ V+DS+LR P +L+ I
Sbjct: 195 WRARACAVLTGVGTVLADDPRLDVREVPTERQPWVAVLDSHLRTPPDAALLRAQARDVVI 254
Query: 237 FTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
+ A + + L G ++ LP G+V L+ V+ +L R+ NE+H+EAG + AL
Sbjct: 255 YCAIRDESRERALCASGATIVHLPGPDGRVALRDVMADLAAREANEVHVEAGAIASGALC 314
Query: 297 LEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
G VDE+LLY++P L+G+ + P L + + L + ++GPD+R+ AR
Sbjct: 315 AAGLVDEVLLYLAPKLLGQGRGIAPFGPLPDLGQALGLTIRSVAQVGPDLRVCARV 370
>gi|372487943|ref|YP_005027508.1| riboflavin biosynthesis protein RibD [Dechlorosoma suillum PS]
gi|359354496|gb|AEV25667.1| riboflavin biosynthesis protein RibD [Dechlorosoma suillum PS]
Length = 365
Score = 314 bits (804), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 176/352 (50%), Positives = 240/352 (68%), Gaps = 5/352 (1%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L ++SPNPRVGCV+V++ ++ G+ G HAE+ AL A
Sbjct: 17 ALALAEQGL-FSTSPNPRVGCVLVRDGVVVGEGWHVRAGEPHAEVHALRAAGEA---ARG 72
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPCS+ G TPPC EAL+ +G+ +V+ A+ DPNPLV+G+G+A L AGI V G
Sbjct: 73 ATAYVTLEPCSHHGRTPPCAEALVAAGVARVVAAMEDPNPLVAGRGLAILRQAGIEVCAG 132
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
++ EA E+NIGF SRM RG PWVR+K ASSLD +T+L N SQWIT E+R D H WRA
Sbjct: 133 VLANEARELNIGFVSRMTRGRPWVRLKAASSLDGRTALANGQSQWITGAEARQDGHRWRA 192
Query: 182 RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATD 241
R+CAIL+G GTVL D+P+LNVR + T QP +V+DS L+ P R+L G I TA
Sbjct: 193 RACAILSGSGTVLADDPQLNVRGVDTERQPRPVVVDSRLQTPPTARLLDGRPVLIATANP 252
Query: 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCV 301
K L G EV++LP+ G+VDL A+++ELG+R INELH+E G LN AL+ G V
Sbjct: 253 DLAKAAALAAQGAEVLLLPDAAGRVDLAALLLELGRRGINELHVEGGAGLNGALLAAGLV 312
Query: 302 DELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
DELLLY++P L+G A +F LP SL+++ +L++H+++++G D+RILAR
Sbjct: 313 DELLLYLAPTLLGNPALGLFGLPELTSLEQQQRLRWHDLRQVGGDLRILARL 364
>gi|451812450|ref|YP_007448904.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778352|gb|AGF49300.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 380
Score = 312 bits (800), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 162/351 (46%), Positives = 227/351 (64%), Gaps = 3/351 (0%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K S N++PNP VGC+IVK I G T++ GG HAE+ AL+++ + +V
Sbjct: 11 MLEALKLADKASYNTAPNPSVGCIIVKNGECIGMGATRAVGGFHAEVCALIDSEKRNQNV 70
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST Y+TLEPCS++G TPPC + +IK+ +V++++ DPNPLVSG G+ +L S+GI V
Sbjct: 71 TGSTFYVTLEPCSHYGRTPPCVDQIIKAAPARVVVSMIDPNPLVSGSGIKRLRSSGIEVL 130
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ KEA +NIGF +RM PWVR+K ASS+D +T+LYN+ S+WIT +ESR D H W
Sbjct: 131 IGVCHKEALLLNIGFINRMLYSTPWVRLKSASSIDGRTALYNHKSKWITCEESRKDVHHW 190
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RARS ILTGIGT+L DNP LNVR + TS QPYR VID I ++ G IFT+
Sbjct: 191 RARSSIILTGIGTILHDNPLLNVRYVDTSRQPYRAVIDDKFVISEDANIIDGSKVFIFTS 250
Query: 240 TDLPMKRKILEDLGHEVIVLPNN--LGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
K L + +V++LP+ G+VDL V+ L + NE+H+EAG LN L+
Sbjct: 251 IVDKEKEYRLAEKNVDVVLLPDEKVAGRVDLSLVMRWLSDKCFNEVHVEAGAGLNGRLLS 310
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
CVDEL++YI+PI +G+A+ + L +L+ ++ + IG D+RI
Sbjct: 311 GHCVDELVIYIAPIFLGDAFPIAKLQNISNLEDALRFSIFDNATIGSDLRI 361
>gi|313200621|ref|YP_004039279.1| riboflavin biosynthesis protein ribd [Methylovorus sp. MP688]
gi|312439937|gb|ADQ84043.1| riboflavin biosynthesis protein RibD [Methylovorus sp. MP688]
Length = 368
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 162/357 (45%), Positives = 232/357 (64%), Gaps = 12/357 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAA--AQGY 57
M AL+ A+ + ++PNPRVGCVIVK+ +I+ G G HAE+ AL A AQG
Sbjct: 10 MARALRLAEQGLYTTTPNPRVGCVIVKDGQIVGEGAHLKAGEPHAEVHALRQAGDLAQGA 69
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
D Y +TLEPCS+ G TPPC +ALIK+G+K+V+ A+ DPNP V+G G+ +L + GI+
Sbjct: 70 DAY-----VTLEPCSHHGRTPPCADALIKAGVKRVVAAMQDPNPQVAGSGLQRLQAQGIA 124
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V+ GL++ +A +N GF SRM R P+VR KIA+SLD T+L N SQWIT E+R D
Sbjct: 125 VQSGLLEAQARSLNAGFISRMTRRRPFVRSKIAASLDGATALQNGISQWITGPEARKDVQ 184
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIK---TSHQPYRIVIDSYLRIDPFFRVLKGGGS 234
WRA+SC +LTGIGTVL D+P+L+VR QP R+++DS+L+I P R+L+GG +
Sbjct: 185 HWRAQSCVMLTGIGTVLADDPQLSVRDEAGELQGRQPLRVIVDSHLQISPQARILQGGNA 244
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
I + + L G E++ LP++ +V L +++ L R INE+ +EAG LN A
Sbjct: 245 LIVYGSASADRIAALCQHGVELMHLPDHQSRVSLDSLLELLASRGINEVMVEAGATLNGA 304
Query: 295 LILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
L+ G +D+L+LY +P L+G +A MF LP S+ +I L ++++IG DIR+LA
Sbjct: 305 LLHGGLIDQLILYYAPKLLGADARGMFGLPMLQSMAARIDLDITDMRQIGRDIRLLA 361
>gi|253998546|ref|YP_003050609.1| riboflavin biosynthesis protein RibD [Methylovorus glucosetrophus
SIP3-4]
gi|253985225|gb|ACT50082.1| riboflavin biosynthesis protein RibD [Methylovorus glucosetrophus
SIP3-4]
Length = 368
Score = 308 bits (790), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 162/357 (45%), Positives = 232/357 (64%), Gaps = 12/357 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAA--AQGY 57
M AL+ A+ + ++PNPRVGCVIVK+ +I+ G G HAE+ AL A AQG
Sbjct: 10 MARALRLAEQGLYTTTPNPRVGCVIVKDGQIVGEGAHLKAGEPHAEVHALRQAGNLAQGA 69
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
D Y +TLEPCS+ G TPPC +ALIK+G+K+V+ A+ DPNP V+G G+ +L + GI+
Sbjct: 70 DAY-----VTLEPCSHHGRTPPCADALIKAGVKRVVAAMQDPNPQVAGSGLQRLQAQGIA 124
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V+ GL++ +A +N GF SRM R P+VR KIA+SLD T+L N SQWIT E+R D
Sbjct: 125 VQSGLLEAQARSLNAGFISRMTRRRPFVRSKIAASLDGATALQNGISQWITGPEARKDVQ 184
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIK---TSHQPYRIVIDSYLRIDPFFRVLKGGGS 234
WRA+SC +LTGIGTVL D+P+L+VR QP R+++DS+L+I P R+L+GG +
Sbjct: 185 HWRAQSCVMLTGIGTVLADDPQLSVRDEAGELQGRQPLRVIVDSHLQISPQARILQGGNA 244
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
I + + L G E++ LP++ +V L +++ L R INE+ +EAG LN A
Sbjct: 245 LIVYGSASADRIAALCQHGVELMHLPDHQSRVSLDSLLELLASRGINEVMVEAGATLNGA 304
Query: 295 LILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
L+ G +D+L+LY +P L+G +A MF LP S+ +I L ++++IG DIR+LA
Sbjct: 305 LLHGGLIDQLILYYAPKLLGADARGMFGLPMLQSMAARIDLDITDMRQIGRDIRLLA 361
>gi|451823308|ref|YP_007459582.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776108|gb|AGF47149.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 367
Score = 305 bits (781), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 164/353 (46%), Positives = 221/353 (62%), Gaps = 7/353 (1%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
M AL A+ S+ +PNP VGC+IVK+ I G T+S GGNHAE+ A+ +A ++GY +
Sbjct: 1 MGQALDLARDSVCCAPNPSVGCIIVKDTYCIGRGSTESYGGNHAEVVAIKDALSKGYVLA 60
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
ST+Y+TLEPC ++G TPPC ++++ +V+IA+ DPNP+VSGK V QL +GI V
Sbjct: 61 GSTIYVTLEPCCHYGKTPPCLKSILDIQPLRVVIAVLDPNPIVSGKSVNQLRLSGIIVDV 120
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
G+ + EA +NIGFFSRM WVR KIASSLD K+SLYN S+WIT SR D H WR
Sbjct: 121 GVCRDEALWLNIGFFSRMLISRSWVRTKIASSLDGKSSLYNKQSKWITCNNSRKDGHYWR 180
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT 240
ARS AILTGIGTV+ DNP L VR TS QP + ++D IDP + G IFTA
Sbjct: 181 ARSGAILTGIGTVIHDNPSLTVRYFPTSKQPIKAIVDDNFVIDPNSNIFDGSRVVIFTAI 240
Query: 241 DLPMKRKILEDLGHEVIVL-----PNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
K I+ D EV+++ P+NL +DL V+ + INE+H+EAG LN L
Sbjct: 241 SNKEKENIISDKNGEVVLIDSLNRPDNL--MDLNIVMSWFHQNNINEIHVEAGPGLNGRL 298
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
++ +DE L+Y++PILIG+A ++ LP +L + E I DIR+
Sbjct: 299 LITHAIDEFLIYVAPILIGDANSIVKLPIIDNLKESFSFSILESLIIDKDIRL 351
>gi|429462943|ref|YP_007184406.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451811724|ref|YP_007448179.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|429338457|gb|AFZ82880.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|451776882|gb|AGF47881.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 385
Score = 305 bits (780), Expect = 3e-80, Method: Compositional matrix adjust.
Identities = 165/352 (46%), Positives = 220/352 (62%), Gaps = 4/352 (1%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL A+ SI + PNP VGCVIVK I G T+S GG+HAE+ AL +A + Y +
Sbjct: 13 MSQALDLARSSICVAWPNPSVGCVIVKNNFCIGKGSTQSFGGSHAEVCALHDAMGKHYVL 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST+Y+TLEPC ++G TPPC AL+K+ K V+IA+ DPNP+V+GK + L S GI+VK
Sbjct: 73 EGSTIYVTLEPCCHYGKTPPCVNALLKAKPKSVVIAVLDPNPVVNGKSIQILRSVGINVK 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ +EA +NIGFFSR+ +PWVR KIA+SLD ++SLYN SQWITS+ SR D H W
Sbjct: 133 IGICAEEAIWLNIGFFSRVITSLPWVRTKIATSLDGRSSLYNKKSQWITSESSRKDGHYW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RARS AILTGIGT++ DNP L VR S QP + +ID ID + G IFT
Sbjct: 193 RARSGAILTGIGTIINDNPILTVRHFPISRQPIKAIIDDTFLIDSNSNIFDGSRVVIFTT 252
Query: 240 TDLPMKRKILEDLGHEVIVLPN---NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
+ K K + D E+I++ + N K++L +V+ + INE+H+EAG LN L+
Sbjct: 253 INDKEKNKKIIDQNGEIILVDSIGKNSNKINLSSVMKWFAENCINEVHVEAGPGLNGKLL 312
Query: 297 LEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+DE+LLY +PILIGEA +P L + E + I DIRI
Sbjct: 313 KNNSIDEMLLYFAPILIGEANTFIKIPSINELKDAVAFSTLESKLIDNDIRI 364
>gi|83648598|ref|YP_437033.1| riboflavin biosynthesis protein RibD [Hahella chejuensis KCTC 2396]
gi|83636641|gb|ABC32608.1| riboflavin biosynthesis protein RibD [Hahella chejuensis KCTC 2396]
Length = 362
Score = 303 bits (776), Expect = 8e-80, Method: Compositional matrix adjust.
Identities = 156/365 (42%), Positives = 227/365 (62%), Gaps = 19/365 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCV+VKE I+ G+ + G HAE++AL A G
Sbjct: 1 MARALRLAERGLYTTDPNPRVGCVLVKEGVIVGEGWHERAGEGHAEVNALR---AAGESA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS++G TPPC EAL+K+G+++VI A+ DPNP V+GKG+A L AG+ +
Sbjct: 58 RGADCYVTLEPCSHYGRTPPCAEALVKAGVRRVIAAMEDPNPSVAGKGLALLRGAGVESE 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G M EAYE+N+GFF RM G PWVR+K+ASSLD +++L+N S+WIT +R D
Sbjct: 118 VGCMAAEAYELNLGFFKRMSDGRPWVRVKVASSLDGRSALHNGVSKWITGAAAREDVQKL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH-------QPYRIVIDSYLRIDPFFRVLKGG 232
RARS A++TGIGT++ DNP LNVR + QP R+ +DS LR +LK
Sbjct: 178 RARSSAVITGIGTIIADNPSLNVRGPELEQACNGKLRQPMRVALDSQLRFPADSNMLKLP 237
Query: 233 GSCIFTA-TD-----LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
G + A TD L ++ DL EV+ L G++DL+A++ L R+ NE+ +E
Sbjct: 238 GKILLVACTDPSEGWLAQRQSSGADL--EVLKLAGENGRIDLKALLSTLAARECNEVLVE 295
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
AG L A + +G DE+ Y +P L+GE F LP + +D+ I LK ++++++G D+
Sbjct: 296 AGANLAGAFVAQGLADEIWTYTAPKLMGEGRPAFVLPRYEQMDQVITLKLNDVRQVGDDV 355
Query: 347 RILAR 351
R++ R
Sbjct: 356 RMIWR 360
>gi|118595047|ref|ZP_01552394.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Methylophilales bacterium HTCC2181]
gi|118440825|gb|EAV47452.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Methylophilales bacterium HTCC2181]
Length = 363
Score = 302 bits (774), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 154/353 (43%), Positives = 230/353 (65%), Gaps = 5/353 (1%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LA+ AK + + PNP VG + VK+ +I G+ G +HAE+ AL A G
Sbjct: 10 MALAISLAKQGLGKTQPNPVVGAIAVKDSVVIGSGFHAKAGKDHAEVLALKEA---GAGA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST+YITLEPC + G TPPC + ++ SG+ KV++A +DPNPLV+GKG+A L S GI V
Sbjct: 67 KGSTLYITLEPCGHVGKTPPCVDLILSSGVTKVVVASSDPNPLVNGKGLAVLRSHGIEVV 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+ +++ +A +N GFFSRM + +P+VR KIASS+D +T+L N SQWITS+ SR D W
Sbjct: 127 EDVLRLQAEALNTGFFSRMTKNLPYVRSKIASSIDGRTALANGDSQWITSEASRQDVQQW 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAILTG+GT+ KDNPRLNVR++ S QP+R++ D++L IDP ++LK +
Sbjct: 187 RARACAILTGVGTIHKDNPRLNVRNLDESDQPFRVIADTHLSIDPEAQILKQKNIILMFC 246
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
D K LE G +I + + ++DL+ ++ +L NE+ +E+G LN L+ G
Sbjct: 247 NDPHNKASQLEAQGVRLIPITSKDNRIDLEVLMQQLASLAFNEVLVESGPTLNGQLLELG 306
Query: 300 CVDELLLYISPILIGEAYN-MFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDEL++Y +PI++G N +F P S+++KI+LK +I++ G D+R++ +
Sbjct: 307 LVDELIIYQAPIIMGGNANPLFHHPIMTSMEQKIRLKQIDIRQFGEDLRMIMQ 359
>gi|34496745|ref|NP_900960.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chromobacterium violaceum ATCC 12472]
gi|34102600|gb|AAQ58965.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Chromobacterium violaceum ATCC 12472]
Length = 368
Score = 302 bits (773), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 148/353 (41%), Positives = 219/353 (62%), Gaps = 2/353 (0%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + ++PNP VGCV+V R++ G T + G +HAE+ A+ + A+G
Sbjct: 12 MQRALRLAEGATRRAAPNPGVGCVLVNHGRVVGEGATLALGSDHAEVQAIKDCLARGESP 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC E L+K G+ +V+ A+ DP VSG+G+A L +AG+
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCAERLVKEGVARVVAAMVDPYHEVSGRGIAMLRAAGVEAS 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM+ +A + GF SR++RG PWV +K A++LD KT+L N S+WIT E+R D
Sbjct: 132 AGLMEAQARRAHRGFLSRVERGRPWVTLKAAATLDGKTALLNGRSKWITGPEARMDVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA CAILTG GTVL D+P+L VR ++ + QP+R+V+D LR DP RV +GGG+ + +
Sbjct: 192 RAAHCAILTGSGTVLADDPQLTVRELQVASQPWRVVLDGDLRTDPAARVYQGGGAWLASC 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
+ G EV+ L GK DL ++ +L R +NEL +EAG LN A++ G
Sbjct: 252 AADAGRLAAFRGRGVEVLTLARLGGKADLADLLAQLAGRGVNELMVEAGAGLNGAMLRAG 311
Query: 300 CVDELLLYISPILIGEAY-NMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDE++LY++P L G+A +F P L K++L ++ +G D+R+ R
Sbjct: 312 LVDEIVLYLAPSLAGDAARGLFAWPALDDLADKVELDVADVGMVGRDLRLTLR 364
>gi|437999552|ref|YP_007183285.1| riboflavin biosynthesis protein RibD [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451813173|ref|YP_007449626.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429338786|gb|AFZ83208.1| riboflavin biosynthesis protein RibD [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451779142|gb|AGF50022.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 380
Score = 301 bits (772), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 161/351 (45%), Positives = 220/351 (62%), Gaps = 3/351 (0%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K S N++PNP VGC+IVK+ + I G T GG+HAE+ AL++A DV
Sbjct: 11 MREALKLADKASYNTAPNPSVGCIIVKDGKCIGMGATSFVGGDHAEVCALIDARKNNQDV 70
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
S YITLEPCS++G TPPC + +IK+ +V++++ DPNPLVSG G+ +L +GI V
Sbjct: 71 TGSIFYITLEPCSHYGKTPPCVDQIIKASPARVVLSMVDPNPLVSGNGIKKLRLSGIEVL 130
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ KEA +NIGF RM PWVR+K+ASSLD +T+L+N S+WIT +ESR ++H W
Sbjct: 131 VGVCHKEALWLNIGFAYRMLCSKPWVRLKVASSLDGRTALHNYKSKWITCEESRKNTHHW 190
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RARS ILTGIGTV+ DNP LNVR + T+ QP R VID I ++ G +FT+
Sbjct: 191 RARSGIILTGIGTVMHDNPLLNVRYVDTARQPCRAVIDDGFIIGEDINIIDGSKVFVFTS 250
Query: 240 TDLPMKRKILEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
D K+ L D EVI+LPN VDL V+ L NE+H+EAG LN L+
Sbjct: 251 VDNKEKKHRLADKNVEVILLPNEKIPASVDLSLVMKWLADNCFNEIHVEAGAGLNGRLLS 310
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+ V EL++Y++PI +G+A+ + L SL ++ + IG D RI
Sbjct: 311 DNHVGELVMYLAPIFLGDAFPVAKLKRILSLKDALRFSILDAVSIGSDFRI 361
>gi|350553611|ref|ZP_08922779.1| riboflavin biosynthesis protein RibD [Thiorhodospira sibirica ATCC
700588]
gi|349790141|gb|EGZ44061.1| riboflavin biosynthesis protein RibD [Thiorhodospira sibirica ATCC
700588]
Length = 373
Score = 301 bits (771), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 152/352 (43%), Positives = 223/352 (63%), Gaps = 19/352 (5%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+SPNPRVGCVI +II+ G GG HAEI AL A +Q +T Y+TLEPCS
Sbjct: 24 TTSPNPRVGCVIALGAQIIALGAHHQAGGPHAEIHALQQAGSQ---AQGATAYVTLEPCS 80
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC +ALI +GI +V++A+ DPNP VSG+G+ +L AG++V+ GL + EA +N
Sbjct: 81 HHGRTPPCADALIAAGITRVVVAMQDPNPQVSGQGITRLRQAGMTVQVGLREAEARALNP 140
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF RM++G PWVR+K+A SLD +T+L N SQWIT + +R+D WRAR+CA+L+G GT
Sbjct: 141 GFIQRMEQGRPWVRLKLAVSLDGRTALANGDSQWITGEAARHDVQYWRARACALLSGSGT 200
Query: 193 VLKDNPRLNVRSIKTS--------HQPYRIVIDSYLRIDPFFRVLKGGG--SCIFTATDL 242
VL DNPRL++R QP R+++DS LR P R+ S +A
Sbjct: 201 VLADNPRLDMRLSAAQLGIPPEQLRQPLRVILDSQLRTPPDARLFASPAPVSLCHSANAD 260
Query: 243 PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVD 302
P + K+L + ++ + G +DLQAV+ L +++INE+H+EAG L AL+ D
Sbjct: 261 PGRVKVLSEQAQLAVMPLCSSGGLDLQAVMQHLARQQINEVHVEAGGVLAGALLRAQLCD 320
Query: 303 ELLLYISPILIGEAYNM---FTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
ELLLY++P L+G + FTL +D+++ L++ +++ +G D+R++AR
Sbjct: 321 ELLLYMAPHLLGSSARPLADFTL---TRMDQRLSLQWQDLRLVGQDLRLIAR 369
>gi|333982353|ref|YP_004511563.1| riboflavin biosynthesis protein RibD [Methylomonas methanica MC09]
gi|333806394|gb|AEF99063.1| riboflavin biosynthesis protein RibD [Methylomonas methanica MC09]
Length = 362
Score = 300 bits (767), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 154/351 (43%), Positives = 226/351 (64%), Gaps = 4/351 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+ + + PNPRVGCV+VK II+ G+ G HAEIDAL A Q
Sbjct: 9 MARALTLARNGLYTTDPNPRVGCVLVKGGEIIAEGWHAQAGQAHAEIDALAKLADQSL-A 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC +ALI++GI +V++A+ DPNPLV+G G+ ++ +AGI V
Sbjct: 68 QGATAYVTLEPCSHHGRTGPCCDALIQAGIGRVVVAMQDPNPLVAGNGLKKMRAAGIEVS 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+Q +A ++N GF RM G+P+VR K+A SLD +T+L N SQWITS ++R D ++
Sbjct: 128 CGLLQTDAEQLNRGFIKRMVSGLPYVRSKLAMSLDGRTALANGESQWITSSQARQDVQMF 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLK-GGGSCIFT 238
RA S AI+TG+ TVL D+P LN R T QP R+V+DS LR+ ++L+ G + + T
Sbjct: 188 RAESSAIVTGVDTVLADDPSLNARVDFTVKQPVRVVLDSNLRMPANAKMLRLPGETWVIT 247
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
+D P K+ L D G ++ + + G+VDL+ L +++IN + IEAG LN AL+
Sbjct: 248 CSDDPAKQSPLRDAGCKIWQVGSRTGRVDLREAFRLLAQQQINTVWIEAGAALNGALLET 307
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDE LLY++P +G +A +F P S++ K KF+ ++++GPD+R+
Sbjct: 308 ELVDEWLLYVAPCALGDQARGLFQFPELQSMEAKKPFKFNAVRQVGPDLRL 358
>gi|345873177|ref|ZP_08825095.1| riboflavin biosynthesis protein RibD [Thiorhodococcus drewsii AZ1]
gi|343917480|gb|EGV28280.1| riboflavin biosynthesis protein RibD [Thiorhodococcus drewsii AZ1]
Length = 381
Score = 300 bits (767), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 156/361 (43%), Positives = 229/361 (63%), Gaps = 16/361 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A+L + PNPRVGCV+V+E RI+ G+ + G HAE AL A G +
Sbjct: 15 MARAIRLARLGRFTTDPNPRVGCVLVREGRIVGEGWHRWAGEAHAERHALAQA---GAEA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPC + G TPPC +AL+++G+ +V+ A+ DPNPLVSGKG+A+L AGI
Sbjct: 72 CGATVYVTLEPCCHHGRTPPCADALVEAGVARVVCAMVDPNPLVSGKGLARLKDAGIETL 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF R++RG P+VR K+A+SLD +T++ + SQWI+S ESR D +
Sbjct: 132 NGVLEAEARALNPGFIKRLERGRPYVRCKMAASLDGRTAMADGESQWISSPESRRDVQLL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR----------SIKTSHQPYRIVIDSYLRIDPFFRVL 229
RA S AILTGIGTVL D+P LNVR S + QP R+++DS R+ R+L
Sbjct: 192 RAGSSAILTGIGTVLSDDPSLNVRLSASDVPGMDSHEPVRQPLRVLVDSQWRMPADARML 251
Query: 230 KGGGSCIFTAT-DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + T P + LE +G V P G VDL A++ EL +R INE+ +E+G
Sbjct: 252 GLAGETLVVGTAHAPERMAALEAVGAGVWRAPELDGCVDLAALMDELARRGINEVLLESG 311
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAY-NMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
+L A++ G VDE+ LY++P L+G+A +F LP ++ ++ L+ ++++IGPD+R
Sbjct: 312 ARLAGAMLTAGLVDEIQLYLAPHLMGDAARGLFHLPGISAMADRLALEIQDVRRIGPDLR 371
Query: 348 I 348
I
Sbjct: 372 I 372
>gi|149927761|ref|ZP_01916013.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Limnobacter sp. MED105]
gi|149823587|gb|EDM82817.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Limnobacter sp. MED105]
Length = 377
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 219/351 (62%), Gaps = 13/351 (3%)
Query: 9 KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITL 68
K +++PNPRVGCV V++ I+ G+ G HAE+ A+ ++ A+G + ST Y+TL
Sbjct: 21 KGQYSTTPNPRVGCVFVRDGVAIAEGFHAKAGEGHAEVQAIADSRARGVSLAGSTAYVTL 80
Query: 69 EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAY 128
EPC++ G T PC EAL+ +G+ +V+ A+ DPNPLVSGKG+A L +AGI G++ ++A
Sbjct: 81 EPCAHHGRTGPCAEALVATGVARVVAAVLDPNPLVSGKGMAILQAAGIETAHGVLIEQAR 140
Query: 129 EINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILT 188
IN GFFSRM+R PWVR+K+ASS D ++L N +SQWIT + +R H RA++CA+L+
Sbjct: 141 WINRGFFSRMERQRPWVRLKVASSADGISALNNGASQWITGEAARLHGHHLRAQACAVLS 200
Query: 189 GIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKI 248
GIGTV DNP+LNVR I T QP ++++DS L I P R+L+ G + A P +
Sbjct: 201 GIGTVKADNPQLNVRGIDTERQPLKVIVDSKLEISPDARLLQSG--RVLIAHTEPHRPGW 258
Query: 249 L---------EDLGHEVIVLPNNLGKV--DLQAVIIELGKRKINELHIEAGYQLNTALIL 297
L E L + + GKV DL ++ EL +R INELH+EAG+ LN + +
Sbjct: 259 LTTHPNAANIEALNVAPVAAGLHAGKVKTDLLRLLQELAQRGINELHLEAGFGLNGSFLQ 318
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDE++ YI+P +G +F LP +L + ++IGPD+RI
Sbjct: 319 AGLVDEIVQYIAPRFLGPGQGLFRLPELEALPAYVSWAIQSFEQIGPDLRI 369
>gi|296136861|ref|YP_003644103.1| riboflavin biosynthesis protein RibD [Thiomonas intermedia K12]
gi|295796983|gb|ADG31773.1| riboflavin biosynthesis protein RibD [Thiomonas intermedia K12]
Length = 366
Score = 298 bits (763), Expect = 3e-78, Method: Compositional matrix adjust.
Identities = 145/303 (47%), Positives = 202/303 (66%), Gaps = 13/303 (4%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
+SPNPRVGCV+V++ +++ G T + G +HAE+ A+ A +G++V +T Y+TLEPC++
Sbjct: 30 TSPNPRVGCVLVRDGQVLGEGATLAAGQDHAEVQAVKQAWERGHEVRGATTYVTLEPCAH 89
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
G TPPC + L G+ +V+ A+ DPNPLV+G+G+ +L AGI V GL EA EIN+G
Sbjct: 90 HGRTPPCADLLATQGVARVVAALVDPNPLVAGQGLQRLRDAGIQVDVGLFADEAREINLG 149
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F SRM RG PWVR+K+A+SLD T+L N +SQWITS+ +R D H WRAR+CA+LTG+GTV
Sbjct: 150 FISRMVRGTPWVRLKVAASLDGVTALPNGASQWITSEAARADGHHWRARACAVLTGLGTV 209
Query: 194 LKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKI--LED 251
D+P+LNVR+++T QP RIVIDS L P R+L+ S ++ L ++ L
Sbjct: 210 RADDPQLNVRAVQTPRQPIRIVIDSRLECPPTARLLQSADSPLWIVHALSPEQAAPRLAA 269
Query: 252 LGHEVIVL-----------PNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
L I L P+ GK DL+A++ LG+R INELH EAG +LN +L+ G
Sbjct: 270 LRSAAIALLDLQDIALPADPDKPGKTDLRALMQVLGQRGINELHCEAGEKLNGSLLRAGV 329
Query: 301 VDE 303
VDE
Sbjct: 330 VDE 332
>gi|387128126|ref|YP_006296731.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Methylophaga
sp. JAM1]
gi|386275188|gb|AFI85086.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Methylophaga
sp. JAM1]
Length = 365
Score = 297 bits (761), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 159/359 (44%), Positives = 229/359 (63%), Gaps = 18/359 (5%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q A K + PNPRVGCVIVK +II G+ G HAEI+AL +A G+D
Sbjct: 8 MAQAIQLAWKGLYTADPNPRVGCVIVKNDQIIGQGWHHRAGEAHAEINALHDA---GHDA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+FG TPPC +ALI++GIK++ +A+ DPNP+VSG G+ ++ AGI V
Sbjct: 65 EGADCYVTLEPCSHFGRTPPCADALIRAGIKRLFVAMTDPNPVVSGTGIKRIEQAGIEVH 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
QG++Q +A ++N GF RM+ G P+VR KIA SLD +T++ + S+WIT E+R D
Sbjct: 125 QGILQSQAEQLNPGFIQRMRLGRPFVRSKIAMSLDGRTAMASGESKWITGPEARADVQKL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSI-------KTSHQPYRIVIDSYLRIDPFFRVLKGG 232
RARS AILTG+GTVL D+P LNVR + ++ QP ++++DS LR+ R+L
Sbjct: 185 RARSSAILTGVGTVLADDPLLNVRHVDDWYPHGESIRQPLKVIVDSELRMPTSARILNDA 244
Query: 233 GSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLN 292
+FTA + R + D+ E +VLP +VDL ++ L KR+INE+ +EAG LN
Sbjct: 245 KVLLFTACE----RMVRADV--ETLVLPAPNNQVDLSGMLAVLAKREINEVMVEAGAVLN 298
Query: 293 TALILEGCVDELLLYISPILIGEAYN-MFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
AL+ +DE++ Y++P L+G+A +F LP + + I+L +I+ IG D RI A
Sbjct: 299 GALLRSQLIDEMIFYVAPKLMGDAARAVFHLPGMDRMAQNIQLHITDIRAIGQDWRITA 357
>gi|357406246|ref|YP_004918170.1| riboflavin biosynthesis protein RibD [Methylomicrobium alcaliphilum
20Z]
gi|351718911|emb|CCE24585.1| bifunctional riboflavin biosynthesis protein ribD [Includes:
Diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)] [Methylomicrobium alcaliphilum 20Z]
Length = 363
Score = 297 bits (760), Expect = 6e-78, Method: Compositional matrix adjust.
Identities = 160/351 (45%), Positives = 227/351 (64%), Gaps = 7/351 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q A + + PNPRVGCV+VKE II+ G+ G HAE++AL A +
Sbjct: 12 MARAIQLAHNGMYTTQPNPRVGCVLVKEGAIIAEGWHARAGEGHAEVEALKRAQSP---- 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNPLVSG+G+ +L AGI V+
Sbjct: 68 EGATVYVTLEPCSHHGRTPPCCEALVKAGVVRVVAAMQDPNPLVSGRGLTRLNDAGIDVR 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++Q EA ++N GF RMQ G+P++R K+A SLD +T++ + S+WITS +SR D H +
Sbjct: 128 CGVLQNEAMKLNPGFIKRMQTGLPFIRGKLAMSLDGRTAMASGESKWITSDQSRADVHRY 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLK-GGGSCIFT 238
RARS AILTGI TVL D+P LN R + QP R+V+D+ LR+ P R+L G + I T
Sbjct: 188 RARSSAILTGINTVLADDPALNARVEFETLQPARVVLDTRLRMPPTARLLTLPGRNVIVT 247
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
+ + L+ +G EV + GKVDL AV+ LG+ + NE+ IEAG L+ AL+ E
Sbjct: 248 CSQDRSEIDTLQQIGAEVYCVAERNGKVDLSAVMDLLGRLQFNEIFIEAGPTLSGALLAE 307
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDE L+Y+S ++G E +F LP + K L +I++IG D+R+
Sbjct: 308 NLVDEWLIYMSTNVLGDEGRGLFRLPGLEKMADKKHLSLCDIRQIGSDLRL 358
>gi|422349865|ref|ZP_16430753.1| riboflavin biosynthesis protein RibD [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657714|gb|EKB30596.1| riboflavin biosynthesis protein RibD [Sutterella wadsworthensis
2_1_59BFAA]
Length = 372
Score = 296 bits (757), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 152/354 (42%), Positives = 223/354 (62%), Gaps = 3/354 (0%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL++A K S PNP VG VIV++ R+I G+T+ GG HAE+ AL +AAA+G V
Sbjct: 18 MGLALEEAAKARRLSPPNPAVGAVIVRDGRVIGRGFTQQTGGPHAEVMALRDAAARGESV 77
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPCS++G TPPC A+++ I +V+ ++ DPNP V+G+G+ + AGI V
Sbjct: 78 EGATIYVTLEPCSHWGRTPPCALAIVEHRIGRVVTSVADPNPQVAGRGLKMIRDAGIEVT 137
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+G+ KE + N GF +RM G PWVRMK A++LD +T+ + SQWIT +R DS W
Sbjct: 138 EGVRSKEGWLSNRGFLTRMTTGRPWVRMKCAATLDGRTAFPDGRSQWITGPAAREDSQYW 197
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA S A++TGIGTVL DNP++ VR P+R+V+D L +LKGGG+ + A
Sbjct: 198 RAVSGAVVTGIGTVLADNPKMTVRLPDQVRFPFRVVVDPRLETPVGAEILKGGGTVLVCA 257
Query: 240 TDLPMKRKILEDLGHEVIVLPN--NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
L G EV+ LP+ + G+VDL A++ ELG+R++NE+H+EAG LN + +
Sbjct: 258 QAGEEAEAALVAAGAEVLRLPDAAHPGRVDLGALLDELGRRQVNEVHLEAGAGLNGSFLS 317
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDE++LY +P L G + ++P + + +IG D+R++ R
Sbjct: 318 EGLVDEIVLYTAPCLFGSGMPVASVPLPEEPGLAHRWTIEDFTQIGADLRVILR 371
>gi|77165491|ref|YP_344016.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani ATCC
19707]
gi|254433444|ref|ZP_05046952.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani AFC27]
gi|76883805|gb|ABA58486.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Nitrosococcus
oceani ATCC 19707]
gi|207089777|gb|EDZ67048.1| riboflavin biosynthesis protein RibD [Nitrosococcus oceani AFC27]
Length = 365
Score = 294 bits (752), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 157/363 (43%), Positives = 226/363 (62%), Gaps = 14/363 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCV+V+ I+ G+ + G +HAEI+AL A G
Sbjct: 1 MARALKLAQRGLFTTDPNPRVGCVLVRGGEIVGEGWHQQAGDSHAEINALRQA---GIRA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST Y+TLEPC + G TPPCTEALI++G+ +V+ A+ DP+P V+ +G+AQL AG+ V+
Sbjct: 58 QGSTCYVTLEPCCHRGRTPPCTEALIEAGVVRVVAAMGDPHPKVASQGLAQLREAGLQVE 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+Q+EA +N+GF R+ +G PWVR K+A SLD T+L + S+WIT+ +R D W
Sbjct: 118 HGLLQEEAQALNVGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITASPARRDVQRW 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKT--------SHQPYRIVIDSYLRIDPFFRVLKG 231
RARS AILTGIGTV++D+P LNVR + S QP R+V+D L I R+L
Sbjct: 178 RARSSAILTGIGTVVRDDPSLNVRYEELQDEVPPGFSRQPLRVVLDRRLAIMAQARLLSL 237
Query: 232 GGSCIFTATDLPM-KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
G + D K + L G EVI LP +DL A++ L R+INELH+E G +
Sbjct: 238 RGPVMIVCADATSPKAESLRGRGVEVISLPVTPQGLDLMALMAVLAAREINELHVECGAR 297
Query: 291 LNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L +L+ G +DEL+LYI+P L+GE A + LP ++ I++ E++ +G D R++
Sbjct: 298 LAGSLLQAGLMDELVLYIAPKLMGEAALGLLQLPGIQTMRDCIEVDIKEMRAVGQDWRLV 357
Query: 350 ARF 352
A+
Sbjct: 358 AKI 360
>gi|408372489|ref|ZP_11170189.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax hongdengensis
A-11-3]
gi|407767464|gb|EKF75901.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax hongdengensis
A-11-3]
Length = 371
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 145/360 (40%), Positives = 227/360 (63%), Gaps = 15/360 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A++++ + PNPRVGCV+V++ +++ GY G HAE +AL AA G
Sbjct: 10 MARALQLARIALYTTDPNPRVGCVLVRDGQVVGEGYHVRAGEPHAERNAL---AAAGEQA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC +ALI++G+ +V+ A+ DPNP V+G+G+ ++ AGI V
Sbjct: 67 RGATAYVTLEPCSHTGRTGPCADALIEAGVSRVVAAMTDPNPQVAGQGLQRIAEAGIQVA 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N GF SRM R P++R+KIA+S+D +T++ + SQWIT +R +
Sbjct: 127 SGLLEDEARALNPGFISRMTRQRPYIRIKIAASVDGRTAMASGESQWITGPAARENVQHL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPY---------RIVIDSYLRIDPFFRVLK 230
RARS A++TG+GTVL D P VR + + +PY R+++D LR P V+
Sbjct: 187 RARSSAVITGVGTVLADRPSYTVRPEQWTRRPYPGDWVRQPLRVILDRTLRTPPDVPVVS 246
Query: 231 GGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGY 289
G C+ A + P ++ LE G EVI LP + +DLQ +++EL +R+ NE+ +E G
Sbjct: 247 APGHCLVVAGEHHPGRQNALESAGAEVIQLPASGSGIDLQQLLVELNRRECNEVLVECGA 306
Query: 290 QLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L A + EG DEL++Y++P L+G A + LP S+ +K+ LK+ +++++G D+R+
Sbjct: 307 TLAGAFVREGLFDELVVYMAPALLGSSARPLLGLPQLASMSEKVSLKWQDVRQVGEDLRL 366
>gi|74318186|ref|YP_315926.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Thiobacillus
denitrificans ATCC 25259]
gi|74057681|gb|AAZ98121.1| Riboflavin biosynthesis protein RibD
diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
5-amino-6-(5- phosphoribosylamino)uracil reductase
oxidoreductase protein [Thiobacillus denitrificans ATCC
25259]
Length = 359
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 160/350 (45%), Positives = 223/350 (63%), Gaps = 8/350 (2%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ ALQ A + +SPNPRVGCV+VK+ RI+ G+ + G HAEI AL A
Sbjct: 11 MSRALQLAARGLFTTSPNPRVGCVLVKDDRIVGEGWHERAGTPHAEIHALRAAGEA---A 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+ +V+ A+ DPNPLV+G G++ L AGI+ +
Sbjct: 68 RGATAYVTLEPCSHHGRTPPCAEALIDAGVSRVVAAMTDPNPLVAGGGISMLTLAGIAAE 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM+ EA +N GF SRM R PWVR+K AS+LD KT+L N +SQWIT + +R D
Sbjct: 128 VGLMEAEARALNPGFVSRMTRRRPWVRLKTASTLDGKTALANGASQWITGEAARADVQRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAILTG GTVL D+PR+NVR P R+V+DS LR +L +C +
Sbjct: 188 RARACAILTGSGTVLADDPRMNVRDFDIGRAPLRVVVDSTLRTPASAAILPALVACRDAS 247
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P R LE G EVI +P G+VDL A++ L +R +NE+H+EAG LN AL+ G
Sbjct: 248 ---PATRTALEAAGAEVIEMPGVDGRVDLAALLALLAQRGVNEVHVEAGAALNGALLAAG 304
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDE + Y++P+ +G +A +F P +L + + + ++++IG D+R+
Sbjct: 305 LVDEWVAYLAPLAVGDDARGLFAHAPLATLAEAARFRLQDLRQIGGDLRL 354
>gi|381161088|ref|ZP_09870319.1| riboflavin biosynthesis protein RibD [Thiorhodovibrio sp. 970]
gi|380877324|gb|EIC19417.1| riboflavin biosynthesis protein RibD [Thiorhodovibrio sp. 970]
Length = 401
Score = 292 bits (747), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 158/366 (43%), Positives = 228/366 (62%), Gaps = 18/366 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+V+ II+ + + G HAE AL A G
Sbjct: 15 MARALRLAERGLYSTDPNPRVGCVLVRAGEIIADAWHQRTGEPHAEPLALRQA---GEQA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC + G TPPCTEALI +G+ +V+ A+ DPNP V+G+G+ QL +AGI+V+
Sbjct: 72 RGATAYVTLEPCCHQGRTPPCTEALINAGVARVVAAMQDPNPRVAGQGLEQLRAAGIAVE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLMQ EA +N GF RM+ G+PWVR K+A SLD +T++ + S+WITS +R D
Sbjct: 132 AGLMQTEAEALNPGFIRRMRTGLPWVRCKLAMSLDGRTAMASGESRWITSDAARADVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR----------SIKTSHQPYRIVIDSYLRIDPFFRVL 229
RARS AILTGIGTVL D+P LNVR + QP R+V+D+ LR+ R+L
Sbjct: 192 RARSSAILTGIGTVLSDDPSLNVRIDPQTGQAPAARSAVRQPLRVVLDTQLRLPEDARLL 251
Query: 230 KGGGSCIFTATDLPMKRK--ILEDLGHEVIV-LPNNLGKVDLQAVIIELGKRKINELHIE 286
G + P R+ +LE G EV+ +P+ G++DL + ELG+R NE+ IE
Sbjct: 252 GLPGRTLVMTAVTPEHRQWNLLEAAGAEVLTSIPSGSGQIDLGWALRELGRRDCNEVLIE 311
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG QL A + G +DEL +Y++ L+G+ A +F LP +++++ L+ E+++IG D
Sbjct: 312 AGPQLAGAALRGGWIDELWVYLATHLMGDAARGLFHLPGLERMEQRVGLELLEVRQIGDD 371
Query: 346 IRILAR 351
+R+ R
Sbjct: 372 LRLRFR 377
>gi|224824436|ref|ZP_03697543.1| riboflavin biosynthesis protein RibD [Pseudogulbenkiania
ferrooxidans 2002]
gi|224602929|gb|EEG09105.1| riboflavin biosynthesis protein RibD [Pseudogulbenkiania
ferrooxidans 2002]
Length = 364
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 150/350 (42%), Positives = 223/350 (63%), Gaps = 5/350 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + ++PNPRVGCV+V++ ++ G+ + G HAE+ AL A G
Sbjct: 11 MAQALRLAEQGLYTTTPNPRVGCVVVRDGEVVGEGWHIAAGTPHAEVHALRMA---GELA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC + LI++G+ +V+ A+ DP V+G+G+ L +AGI V
Sbjct: 68 RGATAYVTLEPCSHYGRTPPCAKGLIEAGVGRVVAAMQDPYHEVAGRGLDMLRAAGIEVA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N GF SR +RG PWV +K A+SLD KT+L N +SQWIT ++R D H
Sbjct: 128 VGLLEAEARRLNKGFLSRAERGRPWVTLKAAASLDGKTALLNGASQWITGPDARRDVHRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RARSCAILTG GTVL D+P+L VR + T QP R+V+DS L+ P R+ + G + + TA
Sbjct: 188 RARSCAILTGSGTVLADDPQLTVREVFTPRQPRRVVVDSRLQTSPGARIYRDGETILATA 247
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
+ + + G V VL + G+VDL A++ L + + EL +EAG LN AL+ G
Sbjct: 248 VADAARHQPYLEQGVTVWVLGDTAGRVDLAALLARLAQEGVGELMVEAGAGLNGALLQAG 307
Query: 300 CVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDE++LY++P L+G+ A +F P SL K + +++ +G D+R+
Sbjct: 308 LVDEIMLYLAPTLLGDAAQGLFGWPVLESLAGKRNVVVRDLRMVGQDVRL 357
>gi|381150280|ref|ZP_09862149.1| riboflavin biosynthesis protein RibD [Methylomicrobium album BG8]
gi|380882252|gb|EIC28129.1| riboflavin biosynthesis protein RibD [Methylomicrobium album BG8]
Length = 362
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 228/351 (64%), Gaps = 7/351 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCV+V++ +I G+ GG+HAEI AL +A +
Sbjct: 12 MASALRLARNGLYTTHPNPRVGCVLVRDDEVIGEGWHVRAGGDHAEIAALKSAD----NA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI++GI++V+ A+ DPNPLV+G+G+A+L AGI
Sbjct: 68 SGATAYVTLEPCSHHGKTPPCADALIEAGIRRVVAAMPDPNPLVAGRGLAKLREAGIEAV 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++++A +N GF RM G P+VR K+A SLD +T+L + S+WITS+E+R D H
Sbjct: 128 CGVLEEDARRLNPGFIQRMTTGRPFVRSKLAMSLDGRTALESGESRWITSREARQDVHRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLK-GGGSCIFT 238
RA+S AILTGIGTVL D+P L R QP RIV+D++LR+ P ++ K G S I T
Sbjct: 188 RAQSSAILTGIGTVLADDPALTARIGDDVLQPVRIVLDTHLRMPPHMQLAKLPGRSLILT 247
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
A+ + L+ G E+ + G++DL V+ + +++NEL +EAG LN AL+ E
Sbjct: 248 ASGDRRRMADLQKAGFEIHRIVEKNGRIDLNVVMTFMADQQVNELLVEAGPVLNGALLAE 307
Query: 299 GCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
DE ++Y++P ++G+ +FTLP ++ K LK + ++IGPD+R+
Sbjct: 308 NLADEWIVYMAPCVLGDRGRGLFTLPGIRTMADKKLLKLADARQIGPDLRL 358
>gi|375104917|ref|ZP_09751178.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium
JOSHI_001]
gi|374665648|gb|EHR70433.1| riboflavin biosynthesis protein RibD [Burkholderiales bacterium
JOSHI_001]
Length = 380
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 165/356 (46%), Positives = 235/356 (66%), Gaps = 8/356 (2%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
TLAL Q + + S PNPRVGCV+ R+++ G+T+ GG HAE AL A +G +
Sbjct: 14 TLALAQQAIGL-SDPNPRVGCVLADAAGRVVAEGFTQQAGGPHAEAAALAQARERGASLA 72
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV-- 118
T +++LEPC++ G TPPC +AL+ +G+ +V++A DP P V+G+G+A+L +AG+ V
Sbjct: 73 GGTAWVSLEPCAHHGRTPPCADALLAAGLARVVVACEDPFPQVAGQGLARLRAAGVQVLL 132
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ ++A E+NIGFFSR+ RG PWVRMKIA+SLD +T+L N SQWIT + +R D H
Sbjct: 133 ADADLSRQARELNIGFFSRVLRGRPWVRMKIAASLDGRTALSNGQSQWITGEAARTDGHA 192
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFT 238
WR R+ A+LTG+GTVL D+PRL+VR + T+ QP R+V+DS L P R+L G +
Sbjct: 193 WRKRAGAVLTGVGTVLDDDPRLDVRLVPTARQPLRVVVDSKLETPPSARILPPPGEVLLV 252
Query: 239 ATDL--PMKRKILEDLGHEVIVLPNN-LGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
D+ P L G E++ LP GKVDL A++ EL +R +NELH+EAG +LN +
Sbjct: 253 GADVHGPAA-DALRASGAELLALPGGPRGKVDLAALLAELARRGVNELHVEAGTRLNGSF 311
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EG VDELLLY +P+L+G ++ LP LD +L+F +IQ +G D+R+LAR
Sbjct: 312 WREGLVDELLLYQAPLLLGPGRDLAALPELARLDGAQRLRFVDIQAVGDDLRLLAR 367
>gi|146329385|ref|YP_001209386.1| riboflavin biosynthesis protein RibD [Dichelobacter nodosus
VCS1703A]
gi|146232855|gb|ABQ13833.1| riboflavin biosynthesis protein RibD [Dichelobacter nodosus
VCS1703A]
Length = 368
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 161/353 (45%), Positives = 224/353 (63%), Gaps = 11/353 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ SI +++PNPRVGCVIVK II G+ + G HAEI+AL A Q D
Sbjct: 16 MHRALELARNSIFSAAPNPRVGCVIVKNHTIIGEGWHQRAGEAHAEINALNAAGTQARD- 74
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPC++FG TPPCT ALI +G+K+V+IA +DPNPLV+GKG+A L +AGISV+
Sbjct: 75 --ATVYVTLEPCAHFGRTPPCTHALIAAGVKRVVIACSDPNPLVAGKGIAALRAAGISVE 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
QG+ +EA ++N FF RM+ G PWV +KIA+S+D +T+L N SQWIT + +R D H
Sbjct: 133 QGICAQEALQLNRPFFHRMRWGRPWVTLKIAASMDGRTALANGESQWITGELARKDVHFH 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
R + A+L G G+V+ DN RL R + ++ P R+VIDS L+ P L S I
Sbjct: 193 RLAADAVLAGTGSVIGDNARLTARFPTDLPANPPLRVVIDSQLKT-PANAALFCDPSPIL 251
Query: 238 TATDLPMKRKILEDLGHEVIVLP-NNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T P + + + E + LP GKV L A++ ELG+R+IN L +EAG QL A +
Sbjct: 252 MVTTQPPPQSFPQMV--EYLSLPATEQGKVPLSALLDELGRRQINHLFVEAGMQLAGAFL 309
Query: 297 LEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
E VDE+LLY++P +G+ A + LPP L +++ + IG D R+
Sbjct: 310 TEQLVDEILLYLAPTFLGDSARPLVALPPLAHLSDRMRFSIADAHLIGDDWRL 362
>gi|297538271|ref|YP_003674040.1| riboflavin biosynthesis protein RibD [Methylotenera versatilis 301]
gi|297257618|gb|ADI29463.1| riboflavin biosynthesis protein RibD [Methylotenera versatilis 301]
Length = 370
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 151/360 (41%), Positives = 224/360 (62%), Gaps = 14/360 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
MTLAL+ A+ + + PNPRVGCVIVK +I+ G G HAE+ AL A G +
Sbjct: 10 MTLALRLAERGLYTTQPNPRVGCVIVKNNQIVGQGAHLKAGEPHAEVFALREA---GANA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPC++ G TPPC +ALI + +K+V++A+ DPNPLV+G G+ +L + GI V+
Sbjct: 67 EGADAYVTLEPCNHHGRTPPCVDALINARVKRVVVAMQDPNPLVAGNGIKRLQAHGIEVE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM+ E+ +N+GF SRM +P+VR K+A+SLD +T+L N S WIT + +R D W
Sbjct: 127 VGLMEAESKSLNLGFISRMTSALPYVRCKVAASLDGRTALNNGKSLWITGEPARLDVQHW 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLR-------IDPFFRVLKGG 232
RA+SCAI+TGIGTVL DNP +NVR T QP R+++DS L+ ++P +L
Sbjct: 187 RAQSCAIVTGIGTVLTDNPSMNVRLENTGRQPLRVIVDSNLQTPTDCKMLNP--ELLSLS 244
Query: 233 GSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLN 292
+ A D K L G +++ LP+ G+V+L A++ L R +NE+ +EAG LN
Sbjct: 245 PVLVAYAQDAHHKASALTATGAQLLHLPDESGRVNLHALLKNLASRDVNEVLLEAGQGLN 304
Query: 293 TALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
A + G VDE + Y +P L+G +A MF + + + L+ ++++IG DIR+ A+
Sbjct: 305 GAFLQAGLVDEFIFYYAPKLMGADAKGMFAISELIEMQQATDLQIFDVRQIGQDIRVRAK 364
>gi|292492824|ref|YP_003528263.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4]
gi|291581419|gb|ADE15876.1| riboflavin biosynthesis protein RibD [Nitrosococcus halophilus Nc4]
Length = 373
Score = 290 bits (741), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/351 (43%), Positives = 220/351 (62%), Gaps = 13/351 (3%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNPRVGCV+V+ I+ G+ + G HAE++AL A + +T Y+TLEPC
Sbjct: 22 FTTDPNPRVGCVLVRAGEIVGEGWHQWAGDAHAEVNALRQADVR---ARGATCYVTLEPC 78
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
+ G TPPCTEALI++G+ +V+ A+ DPNP V+G+G+AQL AG+ V+ GL+Q+EA +N
Sbjct: 79 CHRGRTPPCTEALIEAGVVRVVAAMRDPNPKVAGQGLAQLREAGLQVEYGLLQEEAQALN 138
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF R+ +G PWVR K+A SLD T+L + S+WIT+ +R D WRARS AILTGIG
Sbjct: 139 PGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITAPPARRDVQRWRARSSAILTGIG 198
Query: 192 TVLKDNPRLNVRSIKTSH--------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLP 243
TV+ D+P LNVR + + QP+R+++D L I R+L G + D
Sbjct: 199 TVIGDDPALNVRYEELQNEVPPGFDRQPWRVILDRKLAISEKARLLSLPGPVLIACADGE 258
Query: 244 M-KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVD 302
K + L G EVI LP +DL+A++ L R+INELH+E G +L +L+ G +D
Sbjct: 259 QPKAESLRSKGAEVISLPVASEGLDLKALMAVLAAREINELHVECGARLAGSLLQAGLMD 318
Query: 303 ELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
EL+LYI+P L+GEA + LP +++ I++ EI+ +G D R++A+
Sbjct: 319 ELVLYIAPKLMGEASLGLLRLPGIQTMEDCIQVDIKEIRAVGRDWRLVAKI 369
>gi|110835035|ref|YP_693894.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax borkumensis
SK2]
gi|110648146|emb|CAL17622.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax borkumensis
SK2]
Length = 377
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 221/365 (60%), Gaps = 20/365 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + + PNPRVGCV+V++ ++ G+ G HAE AL A G
Sbjct: 11 MARALQLARRGLYTTDPNPRVGCVLVRDGAVVGEGFHARAGTPHAERHALAQA---GERA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC +ALI +G+ +V+ A+ DPNPLV+G+G+ +L AGI+
Sbjct: 68 RGATAYVTLEPCSHTGRTGPCADALIDAGVTRVVAAMEDPNPLVAGQGLQRLADAGIATA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N GF SRM R P++R+KIA+S+D +T++ N SQWIT +R D
Sbjct: 128 VGLLEAEARALNPGFVSRMTRQRPYIRIKIAASVDGRTAMANGESQWITGPAAREDVQRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS--------------HQPYRIVIDSYLRIDPF 225
RARS A++TG+GTVL D P VR + QP R+++D LR P
Sbjct: 188 RARSSAVITGVGTVLADRPSYTVRPRQWRLAEYRQHAADDDWVRQPLRVILDRTLRTPPD 247
Query: 226 FRVLKGGGSCIFTATDL-PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
V+ G C+ A + P ++ LE G EV++LP + +DLQ ++IEL +R+ NE+
Sbjct: 248 VPVVSALGHCLLVAGEQHPGRQNALESAGAEVMLLPASGSGIDLQQLLIELNRRECNEVL 307
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+E G L A + EG DE+L+Y++P L+G A + LP S+ +K+ LK+ +++++G
Sbjct: 308 VECGATLAGAFVREGLFDEILVYMAPTLLGSSARPLLGLPQLASMSEKVALKWQDVRQVG 367
Query: 344 PDIRI 348
D+R+
Sbjct: 368 DDLRL 372
>gi|226939661|ref|YP_002794734.1| RibD [Laribacter hongkongensis HLHK9]
gi|226714587|gb|ACO73725.1| RibD [Laribacter hongkongensis HLHK9]
Length = 383
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 151/375 (40%), Positives = 224/375 (59%), Gaps = 32/375 (8%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+L + S+ PNPRVGCV+V + ++ G+ G HAE AL A G
Sbjct: 10 MARALQLARLGMTSTAPNPRVGCVVVSDGQVAGEGWHVRAGTPHAERHAL---AMAGERA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+++G+ +V+ A+ DPNPLV+G+G+ +L +AGI
Sbjct: 67 RGATAYVTLEPCSHFGRTPPCADALLQAGVGRVVAAMVDPNPLVAGQGMTRLAAAGIECA 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA E+N GF SRM RG PW+ +K+ SLD KT+L + SQWIT ++R D +
Sbjct: 127 SGLLEAEACELNRGFVSRMTRGRPWLTVKLGISLDGKTALADGQSQWITGAQARAD--VM 184
Query: 180 RARSC--AILTGIGTVLKDNPRLNVRSI--------------------KTSHQPYRIVID 217
R R+C ILTG GTV DNP+L VR++ QP R+++D
Sbjct: 185 RQRACHDVILTGSGTVRADNPQLTVRNLVPDVLPPALQDTPAGRLQAAAPVRQPLRVIVD 244
Query: 218 SYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGK 277
+DP + G ++TA P ++ GH V+ LP G+VDL A++ +LG+
Sbjct: 245 GAGTLDPDAAIFCGAPVRMYTAATTPATGRL---HGHTVVSLPGADGRVDLAALLADLGR 301
Query: 278 RKINELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKF 336
+N++ EAG L AL+ G VDEL+ Y++P+++G A MF LPP +L K ++
Sbjct: 302 LGVNDVWCEAGMGLAGALLHAGLVDELVCYMAPVVLGHSARGMFDLPPLAALADKSCWRW 361
Query: 337 HEIQKIGPDIRILAR 351
H+++ +G D+R+ R
Sbjct: 362 HDVRSVGNDLRLTLR 376
>gi|253996924|ref|YP_003048988.1| riboflavin biosynthesis protein RibD [Methylotenera mobilis JLW8]
gi|253983603|gb|ACT48461.1| riboflavin biosynthesis protein RibD [Methylotenera mobilis JLW8]
Length = 372
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 153/360 (42%), Positives = 229/360 (63%), Gaps = 14/360 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAA--QGY 57
M LAL+ A + + PNPRVGCVIV++++I+ G G HAE+ AL A A +G
Sbjct: 12 MNLALRLAAQGLYTTQPNPRVGCVIVRDQQIVGQGAHHKAGEPHAEVFALRQAGALAEGA 71
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
DVY +TLEPCS+FG TPPC +A+I + K+V+IA+ DPNPLV+G+GV L + G+
Sbjct: 72 DVY-----VTLEPCSHFGRTPPCVQAVIAAKPKRVVIAMQDPNPLVAGRGVTALRAQGVE 126
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V G++++EA +N+GF +RM RG P+VR KIA+SLD +T+L N SQWIT + +R D
Sbjct: 127 VVVGVLEQEAVALNVGFIARMTRGFPYVRSKIAASLDGRTALSNGKSQWITGEAARQDVQ 186
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKG---GGS 234
WRA+SCAILTGIGTVL DNP + VR + QP R+++DS L++ +L+ S
Sbjct: 187 HWRAQSCAILTGIGTVLADNPSMTVRFPTATRQPLRVIVDSKLQLPLNSNMLEPTMLAQS 246
Query: 235 CIFTA--TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLN 292
+ A D + +L G E++ +PN +VDL ++ L +R +NE+ +EAG LN
Sbjct: 247 PVLVAYVVDTEQRAAVLAATGAELLCIPNQTQQVDLAQLLQVLAQRDVNEVLVEAGQGLN 306
Query: 293 TALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
L+ G +DE + Y +P L+G A+ MF +P ++ + L+ +++++G DIR+ A+
Sbjct: 307 GGLLHAGLIDEFIFYYAPKLMGSAAHGMFAMPAFTTMQQVPDLQVLDVRQVGADIRVRAK 366
>gi|296314604|ref|ZP_06864545.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC
43768]
gi|296838643|gb|EFH22581.1| riboflavin biosynthesis protein RibD [Neisseria polysaccharea ATCC
43768]
Length = 369
Score = 288 bits (737), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 148/328 (45%), Positives = 214/328 (65%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A L ++SPNPRVGCVI + +++ G+ G HAE+ AL A G
Sbjct: 10 MQNALDLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHIKAGEPHAEVHALRQA---GKMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L +AGI ++
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKME 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 127 CGLLESEAKELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P+ ++ G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPYSHLVTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAEDLADEIVLYRSPKILGGGKDLFSLP 334
>gi|289209046|ref|YP_003461112.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. K90mix]
gi|288944677|gb|ADC72376.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio sp. K90mix]
Length = 396
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 153/376 (40%), Positives = 223/376 (59%), Gaps = 28/376 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++ PNPRVGCV+V+E ++ G G +HAE++AL A
Sbjct: 16 MARALELADLGRFSADPNPRVGCVLVREGEVVGEGLHWRAGESHAEVNALRAAGEA---A 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPCTEALI++G+ +V+IA+ DPNP V G G+ L +AGI V+
Sbjct: 73 RGATVYVTLEPCSHHGRTPPCTEALIQAGVARVVIAMQDPNPQVCGGGMEALRAAGIEVE 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM++G PWVR+K+A+SLD +T++ + S+WIT + +R D +W
Sbjct: 133 TGVLEAEARALNPGFVQRMEQGRPWVRIKLAASLDGRTAMASGESRWITGEAARRDVQLW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------------SIKTSHQPYRIVIDSYLR 221
RAR+ AILTG GTV+ D+PRL VR S ++ QP R+++D+ LR
Sbjct: 193 RARAGAILTGSGTVVADDPRLTVRLKPHQLAAQAGFPDDPHYSDLSTRQPLRVILDARLR 252
Query: 222 IDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNL------GKVDLQAVIIEL 275
P ++LK G I T D GH V P L G +DL V+ EL
Sbjct: 253 TPPGAQILKSGPVWILTGPDAARSPAADTLRGHGADVRPIALASDSPDGGLDLGEVLAEL 312
Query: 276 GKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLK 335
+ ++NELH+E+G L AL G VDE LLY +P+L+G + P +D++ +L+
Sbjct: 313 ARAEVNELHVESGPGLAGALARGGWVDEWLLYQAPLLLGSSARPLVEWPLARMDERAELE 372
Query: 336 FHEIQKIGPDIRILAR 351
E + +G +R+ AR
Sbjct: 373 ILESRWVGDSLRLRAR 388
>gi|313669033|ref|YP_004049317.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylaminouracil reductase [Neisseria
lactamica 020-06]
gi|313006495|emb|CBN87958.1| putative diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylaminouracil reductase [Neisseria
lactamica 020-06]
Length = 369
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 149/328 (45%), Positives = 214/328 (65%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI + +I+ G+ G HAE+ AL A G
Sbjct: 10 MQNALKLAALGRFSTSPNPRVGCVIAQGGQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V++A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVVAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 127 CGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDKLRPYREHAHVRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGAKLASAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLFSLP 334
>gi|226329108|ref|ZP_03804626.1| hypothetical protein PROPEN_03011 [Proteus penneri ATCC 35198]
gi|225202294|gb|EEG84648.1| riboflavin biosynthesis protein RibD [Proteus penneri ATCC 35198]
Length = 384
Score = 287 bits (735), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 161/368 (43%), Positives = 227/368 (61%), Gaps = 30/368 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A L +SPNP VGCVIVKE I+ GY GG HAE++AL A G
Sbjct: 21 MRRAIELAALGRFTTSPNPNVGCVIVKEGEIVGEGYHHHAGGPHAEVNALKMA---GDKA 77
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +ALI +G+K+V+ A+ DPNP V+G+G+ +L+SAGI V
Sbjct: 78 KGATAYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLLSAGIDVS 137
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ +EA ++N+GFF RM+ G P++++K+ +SLD KT+L + SQWITSK SR D +
Sbjct: 138 HGILMQEAEKLNVGFFKRMRTGFPYIQLKLGASLDGKTALASGESQWITSKASRRDVQNF 197
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIK------TSHQPYRIVIDSYLRIDPFFR 227
RA++ AILT TVL DNP +NVR IK T QP RIV DS R+ +
Sbjct: 198 RAQASAILTTSATVLADNPSMNVRWDELSDEIKALYPEETLRQPIRIVADSQNRVTENHK 257
Query: 228 VLKGGGSCIFTATDL---PMKRKILEDLGHEVIVLPNNLGK---VDLQAVIIELGKRKIN 281
+ + G C T L + + E I+LP N GK VDL ++++LGKR IN
Sbjct: 258 ITQIEGECWLARTKLQPSDWQGNVSE------ILLPTN-GKNSGVDLVLLMMQLGKRNIN 310
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQ 340
+ +E+G AL+ G VDEL++YI+P ++G +A +F L P SL + + +Q
Sbjct: 311 TVWVESGAHFAGALLEAGLVDELIIYIAPKILGDDARGLFALSPLSSLSEAPEFTVDSLQ 370
Query: 341 KIGPDIRI 348
+IG DIR+
Sbjct: 371 QIGSDIRV 378
>gi|225023912|ref|ZP_03713104.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC
23834]
gi|224943386|gb|EEG24595.1| hypothetical protein EIKCOROL_00778 [Eikenella corrodens ATCC
23834]
Length = 364
Score = 287 bits (734), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 150/340 (44%), Positives = 216/340 (63%), Gaps = 11/340 (3%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++SPNPRVGCVI + +I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 24 FSTSPNPRVGCVIAQGGQIVGQGFHLKAGEPHAEVHALRQA---GSAAQGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
++ G TPPC EALI++G+++V+ A+ DPNPLV GKG+A L +AGI V GLM++EA ++N
Sbjct: 81 AHHGRTPPCAEALIRAGVRRVVAAMQDPNPLVVGKGLAILEAAGIQVACGLMEREARQLN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF SR++RG P+V++K A+SLD KT+L N SQWIT + +R+D I RA SCA+LTGIG
Sbjct: 141 RGFLSRIERGRPFVKLKTAASLDGKTALANGQSQWITGEAARHDVQIQRAESCAVLTGIG 200
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG-SCIFTATDLPMKRKILE 250
TVL DNPRL VR T P R+++DS LR+ +L G + I+T +D P E
Sbjct: 201 TVLADNPRLTVRDFPTLRPPLRVLLDSRLRLPAGSHLLDGSAPTLIYTLSDRPAPAGAAE 260
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
E + G++ L AV+ +L R I EL +EAG L +A + + VDE++ Y +P
Sbjct: 261 ICRLEA----DAQGRLSLNAVLADLAARGIGELMLEAGATLGSAFLAQDLVDEIVCYQAP 316
Query: 311 ILIGEAYN--MFTLPPH-YSLDKKIKLKFHEIQKIGPDIR 347
L+G A + +F LP + +L ++ I+++G DI+
Sbjct: 317 KLLGGAQSPTLFRLPENPAALSREPDWHTVGIEQLGDDIK 356
>gi|335042329|ref|ZP_08535356.1| pyrimidine deaminase [Methylophaga aminisulfidivorans MP]
gi|333788943|gb|EGL54825.1| pyrimidine deaminase [Methylophaga aminisulfidivorans MP]
Length = 368
Score = 286 bits (733), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 151/363 (41%), Positives = 229/363 (63%), Gaps = 21/363 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK + + PNPRVGCVIVK+ +I+ G+ + G HAE++AL A G
Sbjct: 8 MARAIELAKNGLYTTDPNPRVGCVIVKDNQIVGEGWHQRAGEGHAEVNALHQA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS++G TPPC +AL+ +G+K+V IA+ DPNP+VSG G+ +L AGI V
Sbjct: 65 KGADCYVTLEPCSHYGRTPPCADALVNAGVKRVFIAMTDPNPVVSGSGIHRLREAGIEVH 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
L+ E+ ++N GF RM+ G P++R K+A SLD +T++ + S+WIT ++R D
Sbjct: 125 TKLLSSESEKLNPGFLYRMRYGRPYIRSKVAMSLDGRTAMASGESKWITGPKARLDVQKL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR----------SIKTSHQPYRIVIDSYLRIDPFFRVL 229
RARS AI+TGIGT+L DNP+LNVR S + QP +IV+DS R+ ++L
Sbjct: 185 RARSSAIMTGIGTILADNPQLNVRFSPSDDNWYPSGQKVRQPLKIVVDSEGRLPADAQIL 244
Query: 230 KGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGY 289
K G + TA D+ + E +VLP++ +DL A++ L +R+INEL +EAG
Sbjct: 245 KEGKVLVITAKDIAVADTA------ECLVLPSSDNNIDLNALMAVLAQREINELMVEAGG 298
Query: 290 QLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
LN AL+ G +DEL++Y++P ++G+ A +F LP S+ + + L+ +I+ +G D RI
Sbjct: 299 VLNGALLKAGLIDELIIYMAPKIMGDMARGLFHLPDMVSMAQNLSLEIDDIRAVGKDWRI 358
Query: 349 LAR 351
A+
Sbjct: 359 TAK 361
>gi|347538920|ref|YP_004846344.1| riboflavin biosynthesis protein RibD [Pseudogulbenkiania sp. NH8B]
gi|345642097|dbj|BAK75930.1| riboflavin biosynthesis protein RibD [Pseudogulbenkiania sp. NH8B]
Length = 364
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 147/350 (42%), Positives = 221/350 (63%), Gaps = 5/350 (1%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + ++PNPRVGCV+V++ ++ G+ + G HAE+ AL A G
Sbjct: 11 MARALRLAEQGLYTTTPNPRVGCVVVRDGEVVGEGWHIAAGTPHAEVHALRMA---GELA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC + LI++G+ +V+ A+ DP V+G+G+ L +AGI V
Sbjct: 68 RGATAYVTLEPCSHYGRTPPCAKGLIEAGVGRVVAAMQDPYHEVAGRGLDMLRAAGIEVA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N GF SR +RG PWV +K A+SLD KT+L N +SQWIT ++R D H
Sbjct: 128 VGLLEAEARRLNKGFLSRAERGRPWVTLKAAASLDGKTALLNGASQWITGPDARRDVHRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RAR+CAILTG GTVL D+P+L VR + T QP R+V+DS L+ P R+ + G + + TA
Sbjct: 188 RARACAILTGSGTVLADDPQLTVREVFTPRQPRRVVVDSRLQTSPGARIYRDGETILATA 247
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
+ + + G V L + +VDL A++ L + + EL +EAG LN AL+ G
Sbjct: 248 VADAARHQPYLEQGVTVWTLGDTADRVDLAALLARLAQEGVGELMVEAGAGLNGALLQAG 307
Query: 300 CVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDE++LY++P L+G+ A +F P SL K + +++ +G D+R+
Sbjct: 308 LVDEIVLYLAPTLLGDAAQGLFGWPALESLAGKRNVVVRDLRMVGQDVRL 357
>gi|425073680|ref|ZP_18476786.1| riboflavin biosynthesis protein RibD [Proteus mirabilis WGLW4]
gi|404594951|gb|EKA95506.1| riboflavin biosynthesis protein RibD [Proteus mirabilis WGLW4]
Length = 385
Score = 286 bits (732), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 159/367 (43%), Positives = 234/367 (63%), Gaps = 28/367 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A L +SPNP VGCVIVKE +II GY GG HAE++AL A G +
Sbjct: 22 MRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMA---GENA 78
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+FG TPPC +ALI +G+K+V+ A+ DPNP V+G+G+ +L++AGI V
Sbjct: 79 KGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGIDVS 138
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ +EA ++NIGFF RM+ G P++++K+A+SLD KT+L + SQWITS SR D +
Sbjct: 139 HGVLMQEAEKLNIGFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDVQNF 198
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AILT TVL D+P +NVR +++ QP RI+ DS R+ P ++
Sbjct: 199 RAQASAILTTSATVLADDPAMNVRWEALSDEIKAIYPLESLRQPIRIITDSQNRVTPDYK 258
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGK---VDLQAVIIELGKRKINE 282
+ + G C+ T ED +V I+LP N GK VDL ++++LGKR IN
Sbjct: 259 ITQLAGECLLART-----HSQQEDWQGDVSEILLPTN-GKNSSVDLVLLMMQLGKRNINS 312
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +E+G AL+ G VDEL++YI+P ++G +A + ++ P SL + + +Q+
Sbjct: 313 VWVESGAHFAGALLELGLVDELIIYIAPKILGNDARGLLSISPLSSLSEAPEFTIDSLQQ 372
Query: 342 IGPDIRI 348
IGPDIR+
Sbjct: 373 IGPDIRV 379
>gi|298369934|ref|ZP_06981250.1| riboflavin biosynthesis protein RibD [Neisseria sp. oral taxon 014
str. F0314]
gi|298281394|gb|EFI22883.1| riboflavin biosynthesis protein RibD [Neisseria sp. oral taxon 014
str. F0314]
Length = 367
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 152/357 (42%), Positives = 224/357 (62%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MQNALALARLGRFSTSPNPRVGCVIAHGGQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EALI+SG+ +V+ A+ DPNPLV+GKG+A L +A I +
Sbjct: 67 RGATAYVTLEPCSHYGRTPPCAEALIRSGVARVVAAMTDPNPLVAGKGLAMLEAADIRTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA E+N GF SR++RG P+VR+K A+SLD KT+L + S+WIT + +R D I
Sbjct: 127 SGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALSDGLSKWITGEAAREDVQIL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA++TG+GTVL DNP+LNVR+ T QP R++ DS L+ P R+++ GGS + A
Sbjct: 187 RAESCAVVTGVGTVLADNPQLNVRAFPTVRQPVRVIADSRLQTPPDCRIIRDGGSPVLIA 246
Query: 240 T--DLPMKRKILEDLGHEVIVLPNNL-GKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T + H I+ P+ G++DL ++ L + E+ +EAG L++A +
Sbjct: 247 TLSQDADRLNAFSRFPHVEIIRPSEKDGRIDLADLLKILAAKGCGEVMVEAGAVLSSAFL 306
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPH-YSLDKKIKLKFHEIQKIGPDIRILAR 351
E DEL+LY +P ++G +MFTLP + +L + + ++ +G DI+ + R
Sbjct: 307 AEDLADELVLYQAPKILGCPGRSMFTLPENPAALTESPCWETRSVETLGGDIKWILR 363
>gi|349608728|ref|ZP_08888151.1| riboflavin biosynthesis protein RibD [Neisseria sp. GT4A_CT1]
gi|348611585|gb|EGY61229.1| riboflavin biosynthesis protein RibD [Neisseria sp. GT4A_CT1]
Length = 357
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/357 (43%), Positives = 221/357 (61%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 2 MQNALALARLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 58
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EALI SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 59 RGATAYVTLEPCSHYGRTPPCAEALIGSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIRTE 118
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA E+N GF SR++RG P+VR+K A+SLD KT+L + S WIT + +R D
Sbjct: 119 SGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQTL 178
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS--CIF 237
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS L+ ++ S I
Sbjct: 179 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSKLQTPLGSHIISDDLSPTVIV 238
Query: 238 TATDLPMKRKILEDLGHEVIVLP--NNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
TA D + K H I+ N G++DL A++ +L + E+ +EAG L +A
Sbjct: 239 TAVDDEERLKPYRAFSHIRILRSSENANGRIDLAALLPQLAELGYGEIMVEAGATLTSAF 298
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDIRILAR 351
I G DE++LY +P ++GE ++ TLP + + L + + + ++ IG D++ + R
Sbjct: 299 IESGLADEIVLYQAPKILGEGRSLLTLPANPAVLASEGEWESRSVELIGQDVKWVLR 355
>gi|374622527|ref|ZP_09695051.1| riboflavin biosynthesis protein RibD [Ectothiorhodospira sp. PHS-1]
gi|373941652|gb|EHQ52197.1| riboflavin biosynthesis protein RibD [Ectothiorhodospira sp. PHS-1]
Length = 369
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 227/364 (62%), Gaps = 17/364 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + + PNPRVGCV+V++ ++ G+ G HAE+ AL +A G
Sbjct: 1 MGRALQLARRGLYTTDPNPRVGCVVVRDGHVLGEGFHVRAGEPHAEVLALAHA---GEAA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+++G+ +V++A+ DPNPLV+G+G+ +L AG++V
Sbjct: 58 RGATAYVTLEPCSHHGRTPPCVDALLRAGVGRVVVAMTDPNPLVAGRGLERLREAGVAVA 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM+ EA +N GF SRM+RG PWVR+K+A+SLD +T++ + S+WIT + +R D
Sbjct: 118 VGLMESEARALNPGFVSRMERGRPWVRVKLAASLDGRTAMASGESRWITGEAARRDVQFL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-------HQPYRIVIDSYLRIDPFFRVLKGG 232
RAR+ AILTG+GTV D+PRL+VR + QP R+V+D R+ R+ +
Sbjct: 178 RARASAILTGMGTVRADDPRLDVRLSAEALDVDGPVRQPLRVVLDREGRLTAAARLFQTE 237
Query: 233 GSCIFTATD---LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGY 289
G + TD L + + L D+ V + + G +DL AV+ L + ++NELH+EAG
Sbjct: 238 GP-VLVLTDPEALARQTRDLADVNARVEAVTVSRGHLDLPAVMNLLARHQVNELHVEAGP 296
Query: 290 QLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L AL+ G VDEL++Y++P L+G A +F LP D ++ L +++ +G D RI
Sbjct: 297 VLCGALLGAGLVDELVIYLAPHLMGATARGLFDLPLGRMAD-RVALDISDMRAVGRDWRI 355
Query: 349 LARF 352
AR
Sbjct: 356 TARV 359
>gi|421559796|ref|ZP_16005664.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 92045]
gi|402334562|gb|EJU69846.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 92045]
Length = 369
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 150/328 (45%), Positives = 212/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALQLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ H I++P+ GK+DL +++ L I EL +EAG +L +A
Sbjct: 247 TLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLFSLP 334
>gi|344940639|ref|ZP_08779927.1| riboflavin biosynthesis protein RibD [Methylobacter tundripaludum
SV96]
gi|344261831|gb|EGW22102.1| riboflavin biosynthesis protein RibD [Methylobacter tundripaludum
SV96]
Length = 361
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 147/338 (43%), Positives = 216/338 (63%), Gaps = 6/338 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNPRVGCV+V++ +I G+ G HAE++AL N D +T Y+TLEPCS
Sbjct: 23 TTDPNPRVGCVLVRDGEVIGQGWHVKAGQGHAEVEALKNVP----DAKGATAYVTLEPCS 78
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC +ALIK+G+ +V+ A+ DPNP VSG G+ +L AGI V G++Q++A +N
Sbjct: 79 HQGRTPPCCDALIKAGVSRVVAAMQDPNPQVSGSGLKKLKVAGIEVICGVLQEDALALNR 138
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF RM P+VR K+A SLD +T++ + S+WITS E+R D H RA S AILTGI T
Sbjct: 139 GFIKRMTDSRPFVRSKLAMSLDGRTAMASGESKWITSNEARADVHRLRAESSAILTGINT 198
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLK-GGGSCIFTATDLPMKRKILED 251
VL D+P LN R QP R+V+D++L + ++ K G S I T K+ L+
Sbjct: 199 VLADDPALNARVDGDVLQPVRVVLDTHLNMPVTAQMAKLPGRSLILTCAQDEQKQGALQQ 258
Query: 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPI 311
+G EV LP G++DLQAV+ LG+++INEL +EAG LN AL+ E VDE ++Y++P
Sbjct: 259 VGFEVYQLPCKNGRLDLQAVMDFLGQQQINELLVEAGSVLNGALLDEDWVDEYVIYMAPC 318
Query: 312 LIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
++G + +F LP + K +LK +++++G D+++
Sbjct: 319 ILGDQGRGLFNLPGLQQMADKKQLKLRDVRQVGQDLKL 356
>gi|300113757|ref|YP_003760332.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113]
gi|299539694|gb|ADJ28011.1| riboflavin biosynthesis protein RibD [Nitrosococcus watsonii C-113]
Length = 371
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/363 (42%), Positives = 226/363 (62%), Gaps = 14/363 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCV+V+ I+ G+ + G +HAEI+AL A G
Sbjct: 7 MVRALKLAQRGLFTTDPNPRVGCVLVRGGEIVGEGWHQQAGDSHAEINALRQA---GIRA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST Y+TLEPC + G TPPCTEALI++G+ +V+ A+ DP+P V+ +G+AQL AG+ V+
Sbjct: 64 QGSTCYVTLEPCCHRGRTPPCTEALIEAGVARVVAAMGDPHPKVASQGLAQLREAGLQVE 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+Q+EA +N+GF R+ +G PWVR K+A SLD T+L + S+WIT+ +R D W
Sbjct: 124 HGLLQEEAEALNVGFVQRLVQGRPWVRCKLAMSLDGATALASGESRWITASPARRDVQRW 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--------SIKTSHQPYRIVIDSYLRIDPFFRVLKG 231
RARS AILTGIGTVL+D+P LNVR + + QP R+++D L I R+L
Sbjct: 184 RARSSAILTGIGTVLEDDPSLNVRYEELGDEAPLGFNRQPLRVILDRQLAISVQARLLSL 243
Query: 232 GGSCIFTATDLP-MKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
G + D K + L G EVI LP +DL A++ L R+INELH+E G +
Sbjct: 244 PGPVMIVCADAASSKAESLRCRGVEVISLPVTPQGLDLMALMAALAAREINELHVECGAR 303
Query: 291 LNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L +L+ G +DEL+LYI+P L+GE A + LP ++ I++ E++ +G D R++
Sbjct: 304 LAGSLLQAGLMDELVLYIAPKLMGEAALGLLQLPGIQTMKDCIEVDIKEMRAVGRDWRLV 363
Query: 350 ARF 352
A+
Sbjct: 364 AKI 366
>gi|269213784|ref|ZP_05982845.2| riboflavin biosynthesis protein RibD [Neisseria cinerea ATCC 14685]
gi|269145361|gb|EEZ71779.1| riboflavin biosynthesis protein RibD [Neisseria cinerea ATCC 14685]
Length = 361
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 148/328 (45%), Positives = 212/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 2 MHQALDLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 58
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC +ALI++G+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 59 QGATAFVTLEPCSHYGRTPPCAKALIQAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTE 118
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WITS+E+R D +
Sbjct: 119 CGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITSEEARADVQVL 178
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNP+LNVR T QP RIV+DS LR+ P+ ++ G S + A
Sbjct: 179 RAESCAVLTGIGTVLADNPQLNVRDFPTLRQPARIVLDSRLRLPPYSHLVTDGQSPTYIA 238
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 239 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 298
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 299 LAEDLADEIVLYRSPKILGSGKDLFSLP 326
>gi|227358137|ref|ZP_03842478.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Proteus mirabilis ATCC 29906]
gi|227161473|gb|EEI46510.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Proteus mirabilis ATCC 29906]
Length = 385
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 159/367 (43%), Positives = 234/367 (63%), Gaps = 28/367 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A L +SPNP VGCVIVKE +II GY GG HAE++AL A G +
Sbjct: 22 MRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMA---GENA 78
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+FG TPPC +ALI +G+K+V+ A+ DPNP V+G+G+ +L++AGI V
Sbjct: 79 KGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGIDVS 138
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ +EA ++NIGFF RM+ G P++++K+A+SLD KT+L + SQWITS SR D +
Sbjct: 139 HGVLMQEAEKLNIGFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDVQNF 198
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AILT TVL D+P +NVR +++ QP RI+ DS R+ P ++
Sbjct: 199 RAQASAILTTSATVLADDPAMNVRWEVLSDEIKAIYPLESLRQPIRIITDSQNRVTPDYK 258
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGK---VDLQAVIIELGKRKINE 282
+ + G C+ T ED +V I+LP N GK VDL ++++LGKR IN
Sbjct: 259 ITQLAGECLLART-----HSQQEDWQGDVSEILLPTN-GKNSSVDLVLLMMQLGKRNINS 312
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +E+G AL+ G VDEL++YI+P ++G +A + ++ P SL + + +Q+
Sbjct: 313 IWVESGAHFAGALLELGLVDELIIYIAPKILGDDARGLLSISPLSSLSESPEFTIDSLQQ 372
Query: 342 IGPDIRI 348
IGPDIR+
Sbjct: 373 IGPDIRV 379
>gi|261365730|ref|ZP_05978613.1| riboflavin biosynthesis protein RibD [Neisseria mucosa ATCC 25996]
gi|288565756|gb|EFC87316.1| riboflavin biosynthesis protein RibD [Neisseria mucosa ATCC 25996]
Length = 365
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 156/357 (43%), Positives = 221/357 (61%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MQNALALARLGRFSTSPNPRVGCVIAHGGQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EALI SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 RGATAYVTLEPCSHYGRTPPCAEALISSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIRTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA E+N GF SR++RG P+VR+K A+SLD KT+L + S WIT + +R D
Sbjct: 127 SGLLEAEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQTL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS--CIF 237
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS L+ ++ S I
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSKLQTPLGSHMVSDDLSPTVIV 246
Query: 238 TATDLPMKRKILEDLGHEVIVLP--NNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
TA D + K H I+ N G++DL A++ +L + E+ +EAG L +A
Sbjct: 247 TAVDDEERLKPYRAFHHIRILRSSENAAGRIDLAALLPQLAELGYGEIMVEAGATLTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDIRILAR 351
I G DE++LY +P ++GE ++ TLP + + L + + + ++ IG D++ + R
Sbjct: 307 IEAGLADEIVLYQAPKILGEGRSLLTLPANPAVLTSEGEWESRSVELIGQDVKWVLR 363
>gi|348590665|ref|YP_004875127.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella
asinigenitalis MCE3]
gi|347974569|gb|AEP37104.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella
asinigenitalis MCE3]
Length = 390
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 151/352 (42%), Positives = 221/352 (62%), Gaps = 21/352 (5%)
Query: 15 SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYD--VYNSTVYITLEPCS 72
PNP VGCVIV +II G T+ G NHAEI+AL + +G + +ST+Y+TLEPCS
Sbjct: 24 DPNPCVGCVIVHGDKIIGQGATQVAGSNHAEIEALQDVEKRGLGSLLKDSTLYVTLEPCS 83
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC +ALI+SGI++V +A+ DPNPLV G G++ L S GI V G + +E E+N+
Sbjct: 84 HHGRTPPCVDALIRSGIREVAVALPDPNPLVGGNGISSLRSHGIDVHVGYLMEEVLELNV 143
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GFFSRM G PW+R KIASSLD + SL N S+WIT+++SR+D H WR+R+ I TG+GT
Sbjct: 144 GFFSRMLLGRPWIRTKIASSLDGRISLANGKSKWITNEQSRHDGHKWRSRASIIFTGVGT 203
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPM--KRKILE 250
VL DNPR+NVR ++T +P ++DS FR L IF+ + + L
Sbjct: 204 VLADNPRMNVRYVETPREPLVAIMDSD------FRTLDNPNLNIFSNPKIIICGNASALS 257
Query: 251 DLGHEVIVLPNNL----------GKVDLQAVIIELG-KRKINELHIEAGYQLNTALILEG 299
+ ++ VLPNN+ G ++L+ +I ++G +INE+H+EAG LNT+L G
Sbjct: 258 NFAYDRGVLPNNIDLIGIDTDSNGLLNLRELIEKVGIANEINEIHVEAGSGLNTSLYEAG 317
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+DE L Y +P+++G+ F + P S+ + L+ ++ KI ++R+ R
Sbjct: 318 LIDEYLWYFAPMILGDCNAPFNISPLESIPEHDYLEMFDLTKISNNVRLRIR 369
>gi|385329063|ref|YP_005883366.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
alpha710]
gi|385856630|ref|YP_005903142.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NZ-05/33]
gi|416189031|ref|ZP_11615047.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M0579]
gi|308389915|gb|ADO32235.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
alpha710]
gi|325135601|gb|EGC58218.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M0579]
gi|325207519|gb|ADZ02971.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NZ-05/33]
Length = 369
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 150/328 (45%), Positives = 213/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI + +I+ G+ G HAE+ AL A G
Sbjct: 10 MQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ H I++P+ GK+DL +++ L I EL +EAG +L +A
Sbjct: 247 TLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLFSLP 334
>gi|425066887|ref|ZP_18470003.1| riboflavin biosynthesis protein RibD [Proteus mirabilis WGLW6]
gi|404601558|gb|EKB01950.1| riboflavin biosynthesis protein RibD [Proteus mirabilis WGLW6]
Length = 385
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/365 (43%), Positives = 233/365 (63%), Gaps = 24/365 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A L +SPNP VGCVIVKE +II GY GG HAE++AL A G +
Sbjct: 22 MRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMA---GENA 78
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+FG TPPC +ALI +G+K+V+ A+ DPNP V+G+G+ +L++AGI V
Sbjct: 79 KGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGIDVS 138
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ +EA ++NIGFF RM+ G P++++K+A+SLD KT+L + SQWITS SR D +
Sbjct: 139 HGVLMQEAEKLNIGFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDVQNF 198
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AILT TVL D+P +NVR +++ QP RI+ DS R+ P ++
Sbjct: 199 RAQASAILTTSATVLADDPAMNVRWEALSDEIKAIYPLESLRQPIRIITDSQNRVTPDYK 258
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGK---VDLQAVIIELGKRKINELH 284
+ + G C+ T + D+ I+LP N GK VDL ++++LGKR IN +
Sbjct: 259 ITQLAGECLLARTH-SQQEAWQGDVSE--ILLPTN-GKNSSVDLVLLMMQLGKRNINSVW 314
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+E+G AL+ G VDEL++YI+P ++G +A + ++ P SL + + +Q+IG
Sbjct: 315 VESGAHFAGALLELGLVDELIIYIAPKILGDDARGLLSISPLSSLSEAPEFTIDSLQQIG 374
Query: 344 PDIRI 348
PDIR+
Sbjct: 375 PDIRV 379
>gi|197283994|ref|YP_002149866.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Proteus mirabilis HI4320]
gi|194681481|emb|CAR40325.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Proteus mirabilis HI4320]
Length = 385
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 157/365 (43%), Positives = 233/365 (63%), Gaps = 24/365 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A L +SPNP VGCVIVKE +II GY GG HAE++AL A G +
Sbjct: 22 MRRAIELAALGRFTTSPNPNVGCVIVKEGKIIGEGYHHHAGGPHAEVNALNMA---GENA 78
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+FG TPPC +ALI +G+K+V+ A+ DPNP V+G+G+ +L++AGI V
Sbjct: 79 KGATVYVTLEPCSHFGKTPPCADALINAGVKRVVAAMQDPNPQVAGRGLHKLVAAGIDVS 138
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ +EA ++NIGFF RM+ G P++++K+A+SLD KT+L + SQWITS SR D +
Sbjct: 139 HGVLMQEAEKLNIGFFKRMRTGFPYIQLKLAASLDGKTALASGESQWITSNASRQDVQNF 198
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AILT TVL D+P +NVR +++ QP RI+ DS R+ P ++
Sbjct: 199 RAQASAILTTSATVLADDPAMNVRWEALSDEIKAIYPLESLRQPIRIITDSQNRVTPDYK 258
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGK---VDLQAVIIELGKRKINELH 284
+ + G C+ T + D+ I+LP N GK VDL ++++LGKR IN +
Sbjct: 259 ITQLAGECLLARTH-SQQEAWQGDVSE--ILLPTN-GKNSSVDLVLLMMQLGKRNINSVW 314
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+E+G AL+ G VDEL++YI+P ++G +A + ++ P SL + + +Q+IG
Sbjct: 315 VESGAHFAGALLELGLVDELIIYIAPKILGNDARGLLSISPLSSLSEAPEFTIDSLQQIG 374
Query: 344 PDIRI 348
PDIR+
Sbjct: 375 PDIRV 379
>gi|417958586|ref|ZP_12601500.1| riboflavin biosynthesis protein RibD [Neisseria weaveri ATCC 51223]
gi|343966800|gb|EGV35053.1| riboflavin biosynthesis protein RibD [Neisseria weaveri ATCC 51223]
Length = 369
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 148/345 (42%), Positives = 219/345 (63%), Gaps = 8/345 (2%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++SPNPRVGCVI + +I+ G+ GG HAE+ AL A G +T Y+TLEPC
Sbjct: 22 FSTSPNPRVGCVIARGSQIVGQGFHIQAGGPHAEVHALRQA---GGLAEGATAYVTLEPC 78
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC EAL+ SG+K+V+ A+ DPNPLVSGKG+A L +AGI + GL++++A E+N
Sbjct: 79 SHYGRTPPCAEALVHSGVKRVVAAMTDPNPLVSGKGLAMLEAAGIQTESGLLEQQARELN 138
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF SR++R P+VR+K A+S+D KT+L + SQWIT +E+R D RA SCA++TGIG
Sbjct: 139 RGFLSRIERNRPFVRLKCAASMDGKTALSDGLSQWITGEEARLDVQTLRAESCAVITGIG 198
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKI--L 249
TVL DNP+LNVR+ T QP RI++DS LR +++ S AT P + ++
Sbjct: 199 TVLADNPKLNVRAFPTLRQPARIIVDSRLRTPEHCHLIQDNTSPTIIATANPEEGRLKKF 258
Query: 250 EDLGHEVIVLPN-NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYI 308
H I+ N + G+VDL ++ L +R E+ +EAG L A + + DE++LY
Sbjct: 259 ARYNHVDIIQTNAHNGQVDLSDLLRLLAERGFGEVMVEAGAGLAGAFLYQDLADEIVLYQ 318
Query: 309 SPILIG-EAYNMFTLPPH-YSLDKKIKLKFHEIQKIGPDIRILAR 351
+P ++G A +F LP + +L + + + H ++ +G DI+ R
Sbjct: 319 APKILGNNARGLFALPENPQTLLQPPQWQTHSLETVGSDIKWTLR 363
>gi|344340684|ref|ZP_08771608.1| riboflavin biosynthesis protein RibD [Thiocapsa marina 5811]
gi|343799365|gb|EGV17315.1| riboflavin biosynthesis protein RibD [Thiocapsa marina 5811]
Length = 400
Score = 284 bits (727), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 225/364 (61%), Gaps = 16/364 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q A+L + PNPRVGCVIV++ I+ G+ + G HAE AL A G
Sbjct: 22 MARAVQLAELGRFTTDPNPRVGCVIVRDGHIVGEGWHRRAGEPHAERHALTEA---GERA 78
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC + G TPPCT+ L+++G+ +V+ A+ DPNPLV+G+G+ L AG++V+
Sbjct: 79 RGATAYVTLEPCCHQGRTPPCTDGLLEAGVARVVCAMVDPNPLVAGRGLRLLAEAGVTVE 138
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ A +N GF +RM++G P+VR K+A+SLD +T++ + SQWIT + +R D
Sbjct: 139 TGLLETAARALNPGFITRMEQGRPYVRCKLAASLDGRTAMASGESQWITGEAARRDVQRL 198
Query: 180 RARSCAILTGIGTVLKDNPRLNVR----------SIKTSHQPYRIVIDSYLRIDPFFRVL 229
RA S AILTGIGT+L D+P LNVR + QP R+V+DS R P R+L
Sbjct: 199 RAGSSAILTGIGTLLADDPSLNVRIGAEDLPGMGPGEVIRQPLRVVLDSRWRTPPGARIL 258
Query: 230 K-GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + I A D + L G E+ + P + +VDL A++ ELG+R+INE+ +E G
Sbjct: 259 TLPGTTLIVGAVDDLGRMAELRSAGAELYLCPGDSAQVDLDALLKELGRREINEVLLETG 318
Query: 289 YQLNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
L A + G VDE+L+Y++P L+G++ +F+LP + +I L +++ +G D+R
Sbjct: 319 PTLAGAAVSAGLVDEILVYLAPHLMGDSGRGLFSLPGLDRMRDRIPLAIVDVRSVGRDLR 378
Query: 348 ILAR 351
I AR
Sbjct: 379 ITAR 382
>gi|268596126|ref|ZP_06130293.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae FA19]
gi|268549914|gb|EEZ44933.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae FA19]
Length = 369
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 150/331 (45%), Positives = 211/331 (63%), Gaps = 14/331 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI ++I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG+ L +AGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 127 CGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P R+L G S A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPDSRLLTDGQSPTLIA 246
Query: 240 TDLPMKR-----KILEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLN 292
T ++R + H I++P+ GK+DL +I L E+ +EAG +L
Sbjct: 247 T---LERNEDRLRPYRKHAHVRILMPSETADGKIDLHHLIRLLADEGFGEIMVEAGSELT 303
Query: 293 TALILEGCVDELLLYISPILIGEAYNMFTLP 323
+A + E DE++LY SP ++G ++F+LP
Sbjct: 304 SAFLAENLADEIVLYRSPKILGGGKDLFSLP 334
>gi|53804252|ref|YP_114101.1| riboflavin biosynthesis protein RibD [Methylococcus capsulatus str.
Bath]
gi|53758013|gb|AAU92304.1| riboflavin biosynthesis protein RibD [Methylococcus capsulatus str.
Bath]
Length = 378
Score = 284 bits (726), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 148/357 (41%), Positives = 224/357 (62%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVG V+V+ ++ G+ + GG HAEI AL +A +
Sbjct: 22 MAHALRLAEKGMYTTDPNPRVGSVVVQGNEVVGAGWHQRAGGPHAEIAALRDARGR---A 78
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +ALI++G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 79 AGATVYVTLEPCSHHGRTPPCADALIEAGVHRVVAAMQDPNPRVAGQGLERLRRAGIEVS 138
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ +EA +N GF RM+ G+P+VR K+A SLD +T+L + S+WIT +R D H
Sbjct: 139 CGLLAREAERLNQGFVKRMRLGLPFVRSKLAMSLDGRTALASGDSKWITGDAARRDVHRL 198
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS--HQPYRIVIDSYLRIDPFFRVLKG-GGSCI 236
RARS I+TGIGT+ D+P L R + QP R+++DS LR P RV + G + +
Sbjct: 199 RARSSVIVTGIGTLRADDPFLTARPNDATELEQPARVILDSRLRSPPNARVFQQPGRTLV 258
Query: 237 FTATDLPMKRKILEDLGHEVI-VLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T P R+ L D+G EV+ V P+ G+ D+ AV+ LG+ + NE+ EAG LN AL
Sbjct: 259 LTTASDPRARQALLDVGAEVLEVEPDGAGRPDVAAVVRLLGRLEFNEVLFEAGASLNGAL 318
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+ G VDE ++Y++P ++G EA +F LP + + +L + +++G D+R++ R
Sbjct: 319 LSAGVVDEWVVYLAPCVLGDEARGLFRLPGLAGMADRPELAIVDARRVGSDMRLILR 375
>gi|254804368|ref|YP_003082589.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
phosphoribosylamino uracil reductase [Neisseria
meningitidis alpha14]
gi|254667910|emb|CBA04065.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
phosphoribosylamino uracil reductase [Neisseria
meningitidis alpha14]
Length = 369
Score = 284 bits (726), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 148/328 (45%), Positives = 212/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +++ G+ G HAE+ AL A G
Sbjct: 10 METALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ H I++P+ GK+DL +++ L I EL +EAG +L +A
Sbjct: 247 TLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLFSLP 334
>gi|421568305|ref|ZP_16014031.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM3001]
gi|402342033|gb|EJU77204.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM3001]
Length = 369
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 148/328 (45%), Positives = 212/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +++ G+ G HAE+ AL A G
Sbjct: 10 METALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ H I++P+ GK+DL +++ L I EL +EAG +L +A
Sbjct: 247 TLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAENLADEIVLYRSPKILGSGKDLFSLP 334
>gi|416184651|ref|ZP_11613085.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M13399]
gi|421543058|ref|ZP_15989158.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM255]
gi|421557764|ref|ZP_16003662.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 80179]
gi|325133593|gb|EGC56254.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M13399]
gi|402315820|gb|EJU51376.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM255]
gi|402333639|gb|EJU68939.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 80179]
Length = 369
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 148/328 (45%), Positives = 212/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +++ G+ G HAE+ AL A G
Sbjct: 10 METALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ H I++P+ GK+DL +++ L I EL +EAG +L +A
Sbjct: 247 TLERDEDKLRPYRKHAHVRILMPSETAGGKIDLNSLMRLLADEGIGELIVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLFSLP 334
>gi|254447932|ref|ZP_05061396.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
HTCC5015]
gi|198262358|gb|EDY86639.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
HTCC5015]
Length = 363
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 152/359 (42%), Positives = 213/359 (59%), Gaps = 11/359 (3%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A + S+ NPRVGCVI + +R+++ GY + PG HAE+ AL D+
Sbjct: 1 MARALQLAAKGLYSTRSNPRVGCVIARGERVLAEGYHQRPGEGHAEVRALQALPESESDL 60
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G T PC+EALIK+GI +V+ A+ DPNP V+G G+A+L AG+ V
Sbjct: 61 STATAYVTLEPCSHYGKTGPCSEALIKAGIGRVVAAMVDPNPDVAGSGLARLQQAGVEVG 120
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N GF RM+ G PWVR+K+A+SLD +T+L + SQWIT +R D H W
Sbjct: 121 SGLLESEARSLNPGFIQRMESGFPWVRLKMAASLDGRTALASGESQWITEAPARLDGHRW 180
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS------IKTSHQPYRIVIDSYLRIDPFFRVLKGGG 233
RAR+ AI+TG+ TVL DN RL R+ S P R+V+DS LR +L G
Sbjct: 181 RARADAIVTGVETVLADNARLTPRADLPQGCSSASEPPLRVVLDSQLRTPADAALLGEAG 240
Query: 234 SCIF---TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
+ D P R +L D G E + ++ +DL +V+ LG +NE H E G +
Sbjct: 241 RVLILHRDGADSPRLRALL-DAGAECAAIESSEKGLDLPSVLRYLGAAGVNECHFECGAR 299
Query: 291 LNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L +L+ EG VDELL Y++P+LIG +L +K K E +++G D R L
Sbjct: 300 LAGSLLEEGLVDELLYYLAPVLIGSEAKPIAEFSLQALSEKKAFKVVEERRMGRDWRFL 358
>gi|383315775|ref|YP_005376617.1| riboflavin biosynthesis protein RibD [Frateuria aurantia DSM 6220]
gi|379042879|gb|AFC84935.1| riboflavin biosynthesis protein RibD [Frateuria aurantia DSM 6220]
Length = 368
Score = 283 bits (725), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 149/357 (41%), Positives = 216/357 (60%), Gaps = 11/357 (3%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
MT AL AK + PNPRVGCVI + ++ G+ + G HAE+ AL A AQ
Sbjct: 14 MTQALALAAKGLYTTDPNPRVGCVIATGEGVVGQGWHRRAGEPHAEVHALREAGAQ---A 70
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +T Y+TLEPC++ G TPPC +ALI++G+ +V++A DP P V+G+G+ +L AGI V
Sbjct: 71 HGATAYVTLEPCAHHGRTPPCADALIEAGVARVVVACQDPFPAVAGQGIERLRQAGIQVD 130
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+Q EA +N GFFSR++RG PW+R+K+A SLD +T+L N S+WIT + +R D+H W
Sbjct: 131 IGLLQAEARALNAGFFSRIERGRPWLRLKMAMSLDGRTALVNGESRWITGEAARADAHRW 190
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQ---PYRIVIDSYLRIDPFFRVLKGGGSCI 236
RARS AIL+ TVL D+P L R + + P R+++D +LR RVL G
Sbjct: 191 RARSSAILSSAATVLADDPLLTARLQDEAVEVVTPVRVILDRWLRTPDDARVLDGSAPTW 250
Query: 237 FTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
+L K ++ +V+P +DL AV+ L INE+H+EAG L AL
Sbjct: 251 LLHGEL-AKPSAIQAARARCVVMPERGKHLDLVAVMQWLASEGINEVHLEAGPTLAGALF 309
Query: 297 LEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
G DELL+Y++P+L+G+ A + LP S+D++ L+ E +G D+R+ RF
Sbjct: 310 TAGLADELLIYMAPVLLGDHAMPLLQLPNLLSMDERWDLQPLEQTMLGADLRL--RF 364
>gi|220934731|ref|YP_002513630.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio
sulfidophilus HL-EbGr7]
gi|219996041|gb|ACL72643.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio
sulfidophilus HL-EbGr7]
Length = 369
Score = 283 bits (724), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 228/361 (63%), Gaps = 14/361 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + + PNPRVGCV+V++ +++ G+ G HAEI AL A G
Sbjct: 10 MARALQLARRGLYTTDPNPRVGCVMVRDGQVLGEGFHVRAGEPHAEILALRQA---GEAA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPC++FG TPPC +ALI +G+ +V+ A+ DPNP V+G+G+A+L +AGI+
Sbjct: 67 RGATVYVTLEPCAHFGRTPPCADALIHAGVARVVAAMVDPNPRVAGQGLARLTAAGITTA 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF SRM++G P+VR+K+A SLD +T++ + S+WIT + +R D
Sbjct: 127 SGVLEAEARALNPGFISRMEQGRPYVRVKLAMSLDGRTAMASGESRWITGEAARRDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-------HQPYRIVIDSYLRIDPFFRVLKGG 232
RAR+ AILTG GTVL DNP L+VR QP R+V+D+ L P ++ G
Sbjct: 187 RARAGAILTGSGTVLADNPGLDVRLSAQELGIEGPVRQPLRVVLDTRLACTPEAKLFTTG 246
Query: 233 G-SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQL 291
G + + TA + L+ G EV + + +DL AV+ L +R INELH+EAG L
Sbjct: 247 GPALVLTAEQDTARYTQLQACGAEVEAVASAPRGLDLHAVLELLARRGINELHVEAGPIL 306
Query: 292 NTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
+L+ G VDEL++Y++P L+G +A + L + +D+++ L+ +I+ +G D RI+A
Sbjct: 307 CGSLMQAGLVDELVIYMAPHLMGNDARGLLNLGLEH-MDERVPLRIEDIRAVGGDWRIVA 365
Query: 351 R 351
R
Sbjct: 366 R 366
>gi|418291209|ref|ZP_12903248.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM220]
gi|372200241|gb|EHP14348.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM220]
Length = 369
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 149/328 (45%), Positives = 211/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MEIALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L SAGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G + +F LP
Sbjct: 307 LAEDLADEIVLYRSPKILGGSSGLFCLP 334
>gi|254428944|ref|ZP_05042651.1| riboflavin biosynthesis protein RibD [Alcanivorax sp. DG881]
gi|196195113|gb|EDX90072.1| riboflavin biosynthesis protein RibD [Alcanivorax sp. DG881]
Length = 387
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 143/370 (38%), Positives = 224/370 (60%), Gaps = 25/370 (6%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ ALQ A+ + + PNPRVGCV+V+ ++ G+ G HAE AL AA G
Sbjct: 11 MSRALQLARHGLYTTDPNPRVGCVLVRGGAVVGEGFHARAGELHAERHAL---AAAGDRA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC +AL+++G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 68 QGATAYVTLEPCSHTGRTGPCADALVEAGVARVVAAMEDPNPQVAGQGLQRLADAGIAVA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A ++N GF +RM R P++R+KIA+S+D +T++ + SQWIT +R D
Sbjct: 128 SGLLETQARDLNPGFIARMTRQRPYIRIKIAASVDGRTAMASGESQWITGPAAREDVQRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-------------------HQPYRIVIDSYL 220
RARS A++TG+GTVL D P VR + + QP R+++D L
Sbjct: 188 RARSSAVVTGVGTVLADRPSYTVRPAQWTLADYHGSPGEHNQAGRDWVRQPLRVILDRTL 247
Query: 221 RIDPFFRVLKGGGSCIFTATDL-PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRK 279
R P V+ G C+ A + P ++ LE G EV+ LP + +DLQ ++IEL +R+
Sbjct: 248 RTPPDVPVVSAPGHCLLVAGEQHPGRQNALESAGAEVMHLPASGSGIDLQQLLIELNRRE 307
Query: 280 INELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHE 338
NE+ +E G L A + EG DE+L+Y++P L+G A + LP S+ +K+ L++ +
Sbjct: 308 CNEVLVECGATLAGAFVREGLFDEILVYMAPALLGSSARPLLGLPQLASMSEKVALRWQD 367
Query: 339 IQKIGPDIRI 348
+++IG D+R+
Sbjct: 368 VRQIGDDLRL 377
>gi|288941493|ref|YP_003443733.1| riboflavin biosynthesis protein RibD [Allochromatium vinosum DSM
180]
gi|288896865|gb|ADC62701.1| riboflavin biosynthesis protein RibD [Allochromatium vinosum DSM
180]
Length = 381
Score = 283 bits (723), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 153/351 (43%), Positives = 219/351 (62%), Gaps = 15/351 (4%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNPRVGCV+V++ +++ G+ + G HAE AL A + D +TVY+TLEPCS
Sbjct: 31 TTDPNPRVGCVLVRDGQVVGEGWHRRAGEPHAEPLALAQAGERARD---ATVYVTLEPCS 87
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC EALI +G+ +V+ A+ DPNP V+G+GV +L AGISV G ++ EA +N
Sbjct: 88 HHGRTPPCAEALIAAGVARVVCAMVDPNPRVAGRGVERLRQAGISVDVGCLESEARALNP 147
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF R ++G P+VR K+A+SLD +T+L S+WITS+ +R D WRA S AI+TG+GT
Sbjct: 148 GFVKRYEQGRPYVRCKLAASLDGRTALATGESKWITSEAARRDVQRWRAGSSAIVTGLGT 207
Query: 193 VLKDNPRLNVRSIKTS----------HQPYRIVIDSYLRIDPFFRVLK-GGGSCIFTATD 241
VL D+P LNVR QP R+V+DS+ R P R+L G + I
Sbjct: 208 VLGDDPSLNVRLTAAELSGMAADDPVRQPCRVVVDSHWRTPPTARLLGLPGRTLIVGIGP 267
Query: 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCV 301
LE G E+I LP G+VDL A++ EL +R++NE+ +EAG L+ A + G V
Sbjct: 268 RDTAAAALEAAGAELIRLPEQAGRVDLAALMAELARREVNEVLLEAGSTLSGAAVRAGLV 327
Query: 302 DELLLYISPILIGEAY-NMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
DE+LLY +P L+G+A +F LP ++ ++ L+ E++ IG D+RI AR
Sbjct: 328 DEILLYQAPCLMGQAAKGLFDLPGIDTMLDRVGLEILEVRSIGRDLRIRAR 378
>gi|255067329|ref|ZP_05319184.1| riboflavin biosynthesis protein RibD [Neisseria sicca ATCC 29256]
gi|255048480|gb|EET43944.1| riboflavin biosynthesis protein RibD [Neisseria sicca ATCC 29256]
Length = 365
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 156/357 (43%), Positives = 220/357 (61%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MQNALALARLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EALI SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 RGATAYVTLEPCSHYGRTPPCAEALIGSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIRTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA E+N GF SR++RG P+VR+K A+SLD KT+L + S WIT + +R D
Sbjct: 127 SGLLETEARELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQTL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS--CIF 237
RA SCA+LTGIGTVL DNP LNVR+ T QP RIV+DS L+ ++ S I
Sbjct: 187 RAESCAVLTGIGTVLADNPCLNVRAFPTLRQPARIVLDSKLQTPLGSHIISDDLSPTIIV 246
Query: 238 TATDLPMKRKILEDLGHEVIVLP--NNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
TA D + K H I+ N G++DL A++ +L + E+ +EAG L +A
Sbjct: 247 TAVDDEERLKPYHAFSHIRILRSSENANGRIDLAALLPQLAELGYGEIMVEAGATLASAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDIRILAR 351
I G DE++LY +P ++GE N+ TLP + + L + + + ++ IG D++ + R
Sbjct: 307 IESGLADEIVLYQAPKILGEGRNLLTLPANPAVLTSEGEWESRSVELIGQDVKWVLR 363
>gi|418288959|ref|ZP_12901366.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM233]
gi|372200654|gb|EHP14698.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM233]
Length = 369
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 145/328 (44%), Positives = 210/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MEIALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNP+LNVR T QP RIV+DS LR+ P+ ++ G S A
Sbjct: 187 RAESCAVLTGIGTVLADNPQLNVRDFPTLRQPARIVLDSRLRLPPYSHLVTDGQSPTLIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNLG--KVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ K+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++ +LP
Sbjct: 307 LAENLADEIVLYRSPKILGSGKDLLSLP 334
>gi|399117000|emb|CCG19812.1| riboflavin biosynthesis protein RibD [Taylorella asinigenitalis
14/45]
Length = 390
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 149/352 (42%), Positives = 219/352 (62%), Gaps = 21/352 (5%)
Query: 15 SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYD--VYNSTVYITLEPCS 72
PNP VGCVIV +II G T+ G NHAEI+AL + +G + +ST+Y+TLEPCS
Sbjct: 24 DPNPCVGCVIVHGDKIIGQGATQVAGSNHAEIEALQDVEKRGLGALIKDSTLYVTLEPCS 83
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC +ALI+SGI++V +A+ DPNPLV G G++ L S GI V G + +E E+N+
Sbjct: 84 HHGRTPPCVDALIRSGIREVAVALPDPNPLVGGNGISSLRSHGIDVHVGYLMEEVLELNV 143
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GFFSRM G PW+R KIASSLD + SL N S+WIT++++R+D H WR+R+ I TG+GT
Sbjct: 144 GFFSRMLLGRPWIRTKIASSLDGRISLANGKSKWITNEQARHDGHKWRSRASMIFTGVGT 203
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPM--KRKILE 250
VL DNPR+NVR ++T +P ++DS FR L IF + + L
Sbjct: 204 VLADNPRMNVRYVETPREPLVAIMDSD------FRTLDSPNLNIFLNPKIIICGNASALS 257
Query: 251 DLGHEVIVLPNNL----------GKVDLQAVIIELG-KRKINELHIEAGYQLNTALILEG 299
+ ++ LPNN+ G ++L+ +I ++G +INE+H+EAG LNT+L G
Sbjct: 258 NFAYDRGALPNNIDLIGIDRDSNGLLNLRELIEKVGIANEINEIHVEAGSGLNTSLYEAG 317
Query: 300 CVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+DE L Y +P+++G+ F + P S+ + L+ ++ KI ++R+ R
Sbjct: 318 LIDEYLWYFAPMILGDCNAPFNISPLESIPEHDYLEMFDLTKISNNVRLRIR 369
>gi|422110917|ref|ZP_16380772.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378405|emb|CBX22958.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 369
Score = 282 bits (722), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 211/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI + +++ G+ G HAE+ AL A G
Sbjct: 10 MQNALKLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 127 CGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHVRILMPSETADGKIDLHRLMRLLAGEGYGEVMVEAGAKLTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLFALP 334
>gi|268685855|ref|ZP_06152717.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
SK-93-1035]
gi|268626139|gb|EEZ58539.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
SK-93-1035]
Length = 369
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/328 (45%), Positives = 211/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI ++I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG+ L +AGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 127 CGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL +I L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETAGGKIDLHHLIRLLADEGFGEIMVEAGCELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAENLADEIVLYRSPKILGGGKDLFSLP 334
>gi|261401666|ref|ZP_05987791.1| riboflavin biosynthesis protein RibD [Neisseria lactamica ATCC
23970]
gi|269208249|gb|EEZ74704.1| riboflavin biosynthesis protein RibD [Neisseria lactamica ATCC
23970]
Length = 369
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 210/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI + +++ G+ G HAE+ AL A G
Sbjct: 10 MQNALKLAALGRFSTSPNPRVGCVIAQGGQVVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 127 CGLLESEARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRTFATLRQPARIVLDSRLRLPQNSHLLTDGQSPTLIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEGRLSPYRKHAHVRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGAKLTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLFSLP 334
>gi|385341332|ref|YP_005895203.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M01-240149]
gi|325201538|gb|ADY96992.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M01-240149]
Length = 369
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 148/328 (45%), Positives = 212/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI + +I+ G+ G HAE+ AL A G
Sbjct: 10 MQNALKLAALGRFSTSPNPRVGCVIAQGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHRLMRLLADEGYGEVMVEAGAKLTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLFSLP 334
>gi|240015845|ref|ZP_04722385.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae FA6140]
gi|240120474|ref|ZP_04733436.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae PID24-1]
gi|254492997|ref|ZP_05106168.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 1291]
gi|268598251|ref|ZP_06132418.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11]
gi|268602915|ref|ZP_06137082.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID1]
gi|268681384|ref|ZP_06148246.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID332]
gi|226512037|gb|EEH61382.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 1291]
gi|268582382|gb|EEZ47058.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae MS11]
gi|268587046|gb|EEZ51722.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID1]
gi|268621668|gb|EEZ54068.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID332]
Length = 369
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 211/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI ++I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG+ L +AGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 127 CGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAENLADEIVLYRSPKILGGGKDLFSLP 334
>gi|340361225|ref|ZP_08683658.1| riboflavin biosynthesis protein RibD [Neisseria macacae ATCC 33926]
gi|339888853|gb|EGQ78278.1| riboflavin biosynthesis protein RibD [Neisseria macacae ATCC 33926]
Length = 365
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 154/357 (43%), Positives = 219/357 (61%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MQNALALARLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EALI SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 RGATAYVTLEPCSHYGRTPPCAEALIGSGVSRVVAAMTDPNPLVAGKGLAMLEAAGIRTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ E E+N GF SR++RG P+VR+K A+SLD KT+L + S WIT + +R D
Sbjct: 127 SGLLETEVRELNRGFLSRIERGRPFVRIKCAASLDGKTALADGRSYWITGEAARADVQTL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS--CIF 237
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS L+ ++ S I
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSKLQTPLNSHMVSDDLSPTVIV 246
Query: 238 TATDLPMKRKILEDLGHEVIVLP--NNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T D + K H I+ N G++DL A++ +L + E+ +EAG L +A
Sbjct: 247 TDVDDEERLKPYRAFSHIRILRSSENAAGRIDLAALLPQLAELGYGEIMVEAGATLTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDIRILAR 351
I G DE++LY +P ++GE ++ TLP + + L + + + ++ IG D++ + R
Sbjct: 307 IESGLADEIVLYQAPKILGEGRSLLTLPANPTVLASEGEWESRSVELIGQDVKWVLR 363
>gi|345877664|ref|ZP_08829405.1| hypothetical protein Rifp1Sym_bb00280 [endosymbiont of Riftia
pachyptila (vent Ph05)]
gi|344225335|gb|EGV51697.1| hypothetical protein Rifp1Sym_bb00280 [endosymbiont of Riftia
pachyptila (vent Ph05)]
Length = 373
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 150/362 (41%), Positives = 234/362 (64%), Gaps = 15/362 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + + PNPRVGCV+VK+ +++ G+ + G HAE +AL A G
Sbjct: 10 MARALQLAEKGLYTTHPNPRVGCVLVKDDQVVGEGWHRRAGEPHAERNALAQA---GERA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T YITLEPC + G TPPC++ALI++G+ +V+ A+ DPNPLV+GKG+AQL +AGI+ +
Sbjct: 67 RGATAYITLEPCCHQGRTPPCSDALIEAGVSRVVAAMRDPNPLVAGKGLAQLEAAGIATE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLMQ +A +N GF RM G P++R K+A SLD +T++ + SQWITS+ +R D
Sbjct: 127 YGLMQAQAEALNPGFTKRMAEGRPYIRCKLAMSLDGRTAMASGESQWITSEAARLDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSHQ---PYRIVIDSYLRIDPFFRVLK 230
RARS AILTGIGT+L D+P +NVR ++ Q P R+V+D L+ P ++LK
Sbjct: 187 RARSSAILTGIGTLLADDPSMNVRLSAEELGLEADLQPPTPVRVVLDPALKTPPTAKMLK 246
Query: 231 -GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGY 289
G + + ++ D P+ L+ G +VI L N ++L V+ L ++++NE+ +E+G
Sbjct: 247 LPGPTLLLSSDDEPLHAAALDAAGAQVISLAANGCNLNLDEVLTVLAEQELNEVLLESGA 306
Query: 290 QLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L AL+ + +DEL++Y++P ++G+ A +F LP + ++I L+ +++K+GPD+RI
Sbjct: 307 TLAGALLEKQLIDELVIYMAPHIMGDSARGLFHLPLLKQMSQRIGLQISDLRKVGPDLRI 366
Query: 349 LA 350
A
Sbjct: 367 TA 368
>gi|194097710|ref|YP_002000751.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
NCCP11945]
gi|240013403|ref|ZP_04720316.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI18]
gi|193933000|gb|ACF28824.1| Riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
NCCP11945]
Length = 361
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 211/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI ++I+ G+ G HAE+ AL A G
Sbjct: 2 MENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA---GEMA 58
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG+ L +AGI +
Sbjct: 59 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTE 118
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 119 CGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 178
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 179 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 238
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 239 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 298
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 299 LAENLADEIVLYRSPKILGGGKDLFSLP 326
>gi|385334965|ref|YP_005888912.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae TCDC-NG08107]
gi|317163508|gb|ADV07049.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae TCDC-NG08107]
Length = 361
Score = 281 bits (719), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 211/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI ++I+ G+ G HAE+ AL A G
Sbjct: 2 MENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALHQA---GEMA 58
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG+ L +AGI +
Sbjct: 59 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTE 118
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 119 CGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 178
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 179 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 238
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 239 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 298
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 299 LAENLADEIVLYRSPKILGGGKDLFSLP 326
>gi|268594076|ref|ZP_06128243.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 35/02]
gi|268547465|gb|EEZ42883.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae 35/02]
Length = 369
Score = 281 bits (718), Expect = 4e-73, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 211/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI ++I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALHQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG+ L +AGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 127 CGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAENLADEIVLYRSPKILGGGKDLFSLP 334
>gi|390949429|ref|YP_006413188.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Thiocystis
violascens DSM 198]
gi|390425998|gb|AFL73063.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Thiocystis
violascens DSM 198]
Length = 403
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 222/369 (60%), Gaps = 33/369 (8%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++ PNP VGCV+V++ + G+ + G HAE +AL A G +T Y+TLEPC
Sbjct: 31 SADPNPCVGCVLVRDGLPVGQGWHRRAGEPHAERNALAQA---GESARGATAYVTLEPCC 87
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPCT+ALI +G+ +V+ A+ DPNPLV+GKG+A L AGI VK G+++++A +N
Sbjct: 88 HHGRTPPCTDALIAAGVTRVVCAMADPNPLVAGKGIAMLREAGIEVKTGVLEEQARALNP 147
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF RM++G P+VR K+A+SLD +T++ + SQWI+S SR + +WRA S AILTGIGT
Sbjct: 148 GFIKRMEQGRPFVRCKLAASLDGRTAMASGESQWISSTASRREVQLWRAASSAILTGIGT 207
Query: 193 VLKDNPRLNVRSIKTS----------------------------HQPYRIVIDSYLRIDP 224
VL D+P LNVR QP RIV+DS+ R+
Sbjct: 208 VLADDPSLNVRLSADEVPELDPLDRMEMELELNLELKPEPGVPPRQPLRIVVDSHWRMPL 267
Query: 225 FFRVLK-GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINEL 283
R+L G + + D P + L G V P G+VDL+A++ EL +R++NEL
Sbjct: 268 QARMLTLPGETLVVGVDDAPARMDALVAAGALVYRCPQRAGRVDLEALMGELARREVNEL 327
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKI 342
+E G L +++ G +DE++LY +P L+G+A +F LP ++ +++ L+ +++++
Sbjct: 328 LLETGATLAGSMLAAGLIDEIVLYQAPHLMGDAGMGLFHLPGVTTMAERMTLEIVDVRRV 387
Query: 343 GPDIRILAR 351
G D+R+ AR
Sbjct: 388 GVDLRVRAR 396
>gi|433522551|ref|ZP_20479234.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 61103]
gi|432257740|gb|ELL13034.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 61103]
Length = 369
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 149/328 (45%), Positives = 209/328 (63%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L SAGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G +F LP
Sbjct: 307 LAEDLADEIVLYRSPKILGGGSGLFCLP 334
>gi|433537306|ref|ZP_20493802.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 77221]
gi|432271729|gb|ELL26851.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 77221]
Length = 369
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 147/327 (44%), Positives = 210/327 (64%), Gaps = 8/327 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTL 322
+ E DE++LY SP ++G ++F+L
Sbjct: 307 LAENLADEIVLYRSPKILGSGKDLFSL 333
>gi|333376545|ref|ZP_08468319.1| riboflavin biosynthesis protein RibD [Kingella kingae ATCC 23330]
gi|332967791|gb|EGK06895.1| riboflavin biosynthesis protein RibD [Kingella kingae ATCC 23330]
Length = 360
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 149/338 (44%), Positives = 208/338 (61%), Gaps = 9/338 (2%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++SPNPRVGCVI +II G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FSTSPNPRVGCVIAHGSQIIGQGFHVQAGSPHAEVHAIRQA---GELARGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LI +G+ +V+ A+ DPNPLV+GKG+A L +AGI V+QGL++ EA ++N
Sbjct: 81 SHYGRTPPCAEGLIAAGVSRVVAAMTDPNPLVAGKGLAMLQAAGIMVEQGLLEHEARQLN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF SR++R P+V +KIA+SLD KT+L N SQWIT +R D I RA+SCA+LTGIG
Sbjct: 141 RGFLSRIERNRPFVSLKIAASLDGKTALSNGQSQWITGAAARADVQIQRAQSCAVLTGIG 200
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILED 251
TVL DNPRLNVR T QP R+V+DS LR +++ G + T P +K
Sbjct: 201 TVLADNPRLNVRDFPTVRQPLRVVLDSQLRTPKSSHIIQDGQRTLIITTS-PDTQKFATY 259
Query: 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPI 311
E+ P + L V+ EL +R I EL IEAG L +A + + +DE++ Y +P
Sbjct: 260 ANVEISKQP---APISLPEVLHELAQRGIGELMIEAGSHLASAFLQQDLLDEIVYYQAPK 316
Query: 312 LIGE-AYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDIR 347
L+G+ A F LP + L + + + ++G DI+
Sbjct: 317 LLGDTARGAFLLPENDDMLRQNPAWQTVSLDRVGDDIK 354
>gi|218767600|ref|YP_002342112.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylamino)uracil reductase
[Neisseria meningitidis Z2491]
gi|433480405|ref|ZP_20437687.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 63041]
gi|433520485|ref|ZP_20477197.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 65014]
gi|433541725|ref|ZP_20498168.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 63006]
gi|121051608|emb|CAM07908.1| putative diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylamino)uracil reductase
[Neisseria meningitidis Z2491]
gi|432214176|gb|ELK70082.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 63041]
gi|432252151|gb|ELL07509.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 65014]
gi|432275928|gb|ELL30993.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 63006]
Length = 369
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 148/328 (45%), Positives = 209/328 (63%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G +F LP
Sbjct: 307 LAEDLADEIVLYRSPKILGGGSGLFCLP 334
>gi|399114815|emb|CCG17611.1| riboflavin biosynthesis protein RibD [Taylorella equigenitalis
14/56]
Length = 387
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 158/366 (43%), Positives = 220/366 (60%), Gaps = 23/366 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYD- 58
M LA + + K PNP VGCVIV II G T+ G +HAEI AL +A +G++
Sbjct: 9 MRLAYEASLKTRFLPDPNPCVGCVIVHNDEIIGEGATQIAGSHHAEIMALKDARMRGHED 68
Query: 59 -VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+ ++ +Y+TLEPCS+FG TPPCT+ALI +GIK V+IA DPNP+V G G+ L S GI
Sbjct: 69 LIADAILYVTLEPCSHFGRTPPCTDALISNGIKHVVIASPDPNPIVGGNGIRILRSNGIK 128
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V+ G M +E E+N+GFFSRM RG PWVR KIASSLD + SL N S+WIT +ESRND H
Sbjct: 129 VEVGFMLEEVLELNLGFFSRMIRGTPWVRTKIASSLDGRISLTNGQSKWITCEESRNDGH 188
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI--DPFFRVLKGGGSC 235
WRARS +LTG+GTVL DNP+LNVR T P ++D L I P +
Sbjct: 189 YWRARSSIVLTGVGTVLADNPKLNVRHFNTPRAPLIGIVDRELNIITKPKLSIFSNPKVY 248
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNL----------GKVDLQAVIIELGKRKINELHI 285
+F + ++DLG ++ L N+ GK++L ++ L ++NE+H+
Sbjct: 249 VFG------EMAKVQDLG--LVDLSENIELVGLGCLDDGKLNLSELLEFLNSLQVNEIHL 300
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG LNT+ G +DELL Y +P+++G + F + S+ KL+ +I+ I +
Sbjct: 301 EAGSGLNTSFYEAGLIDELLWYQAPLVLGNCNSPFNIKEVESIPVDNKLEIFDIKSIKNN 360
Query: 346 IRILAR 351
+R+ R
Sbjct: 361 VRLRIR 366
>gi|90415720|ref|ZP_01223654.1| riboflavin biosynthesis protein [gamma proteobacterium HTCC2207]
gi|90333043|gb|EAS48213.1| riboflavin biosynthesis protein [marine gamma proteobacterium
HTCC2207]
Length = 373
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 155/363 (42%), Positives = 221/363 (60%), Gaps = 17/363 (4%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ AK +SPNP VGCV+V + I+ G+T+ GGNHAE++AL AA+
Sbjct: 11 MSRALELAAKGRFTTSPNPSVGCVLVVDGAIVGEGHTRPAGGNHAEVEALNAAASA---- 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC E LI +GI +V+IA DPNP V+G+G+ L AGI V
Sbjct: 67 KGATAYVTLEPCSHSGKTGPCVEVLIDAGISRVVIACEDPNPKVAGEGIKLLQDAGIEVA 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + +A E+N GF R ++G+PWV +K+A+SLD +T++ + SQWIT+ SR D
Sbjct: 127 CGLYEDQARELNKGFIKRHEQGLPWVVVKMAASLDGRTAMASGQSQWITTPASRKDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-------SIKTSHQPYRIVIDSYLRIDPFFRVLKGG 232
RA +CAI+TGIGT L D+P L VR + QP R+V+DS L++ P R+
Sbjct: 187 RAANCAIITGIGTQLMDDPSLTVRITNDDLGVTDSLRQPLRVVVDSKLQMSPEARMFAQP 246
Query: 233 GSCIFTATDLPMKRK---ILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGY 289
G + D P +R+ LE G V+ LP G VDL +++EL +R+ N + +EAG
Sbjct: 247 GDTLIATMDGPEQRERALPLEAAGAAVVFLPARDGHVDLHELLLELARRECNSVMVEAGA 306
Query: 290 QLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L + EG +DEL+ Y +P L G +A MF LP ++D + L ++++IG DIRI
Sbjct: 307 GLAGGFVAEGLLDELVCYWAPKLFGSDARPMFELPIQ-TIDAHLALAVKDMRQIGEDIRI 365
Query: 349 LAR 351
R
Sbjct: 366 TLR 368
>gi|121634268|ref|YP_974513.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylamino)uracil reductase
[Neisseria meningitidis FAM18]
gi|416179602|ref|ZP_11611038.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M6190]
gi|416193196|ref|ZP_11617073.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
ES14902]
gi|421561836|ref|ZP_16007673.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM2657]
gi|433493169|ref|ZP_20450255.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM586]
gi|433495245|ref|ZP_20452307.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM762]
gi|433497377|ref|ZP_20454406.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M7089]
gi|433497971|ref|ZP_20454987.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M7124]
gi|433501473|ref|ZP_20458454.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM174]
gi|433503567|ref|ZP_20460523.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM126]
gi|120865974|emb|CAM09711.1| putative diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylamino)uracil reductase
[Neisseria meningitidis FAM18]
gi|254670038|emb|CBA04840.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Neisseria meningitidis alpha153]
gi|325131464|gb|EGC54171.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M6190]
gi|325137571|gb|EGC60152.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
ES14902]
gi|402336221|gb|EJU71482.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM2657]
gi|432226772|gb|ELK82495.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM586]
gi|432228569|gb|ELK84268.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM762]
gi|432232247|gb|ELK87895.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M7089]
gi|432233314|gb|ELK88942.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM174]
gi|432236738|gb|ELK92342.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis M7124]
gi|432239037|gb|ELK94597.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM126]
Length = 369
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 210/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 METALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++ +LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLLSLP 334
>gi|59800550|ref|YP_207262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Neisseria
gonorrhoeae FA 1090]
gi|293397713|ref|ZP_06641919.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae F62]
gi|59717445|gb|AAW88850.1| putative diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Neisseria gonorrhoeae FA 1090]
gi|291611659|gb|EFF40728.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae F62]
Length = 369
Score = 280 bits (717), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 210/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG+ L +AGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 127 CGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++F+LP
Sbjct: 307 LAENLADEIVLYRSPKILGGGKDLFSLP 334
>gi|116052093|ref|YP_789063.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|421172675|ref|ZP_15630440.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
CI27]
gi|115587314|gb|ABJ13329.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
UCBPP-PA14]
gi|404537365|gb|EKA46968.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
CI27]
Length = 373
Score = 280 bits (716), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 217/363 (59%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+VK+ +++ G+ G HAE+ AL A G +
Sbjct: 9 MARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQA---GENA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L+ AGI+V+
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAVQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 126 SGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARSAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+G T+L D+ RLNVR ++ + QP R+++D LR+ P
Sbjct: 186 RARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRV-PLESA 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + R+ +D GHE++ LP+ G VDL +++EL R NE+ +EAG
Sbjct: 245 FYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLVELAARGANEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE L+++P +G + P + +L+ +I+ +G D +
Sbjct: 305 PRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLTRMADAAQLRIDDIRAVGDDWLV 364
Query: 349 LAR 351
AR
Sbjct: 365 TAR 367
>gi|416207536|ref|ZP_11620934.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
961-5945]
gi|416207613|ref|ZP_11620953.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
961-5945]
gi|416207665|ref|ZP_11620971.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
961-5945]
gi|325141619|gb|EGC64081.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
961-5945]
gi|325141652|gb|EGC64113.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
961-5945]
gi|325141685|gb|EGC64145.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
961-5945]
Length = 369
Score = 280 bits (716), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 147/327 (44%), Positives = 210/327 (64%), Gaps = 8/327 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTL 322
+ E DE++LY SP ++G ++F+L
Sbjct: 307 LAENLADEIVLYRSPKILGSGKDLFSL 333
>gi|296387387|ref|ZP_06876886.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PAb1]
Length = 373
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 217/363 (59%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+VK+ +++ G+ G HAE+ AL A G +
Sbjct: 9 MARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQA---GENA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L+ AGI+V+
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAVQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 126 SGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARSAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+G T+L D+ RLNVR ++ + QP R+++D LR+ P
Sbjct: 186 RARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRV-PLESA 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + R+ +D GHE++ LP+ G VDL +++EL R NE+ +EAG
Sbjct: 245 FYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLVELAARGANEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE L+++P +G + P + +L+ +I+ +G D +
Sbjct: 305 PRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGDDWLV 364
Query: 349 LAR 351
AR
Sbjct: 365 TAR 367
>gi|15599251|ref|NP_252745.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PAO1]
gi|418584559|ref|ZP_13148620.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
MPAO1/P1]
gi|418593656|ref|ZP_13157492.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
MPAO1/P2]
gi|421518605|ref|ZP_15965279.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PAO579]
gi|9950253|gb|AAG07443.1|AE004822_3 riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PAO1]
gi|375045781|gb|EHS38356.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
MPAO1/P1]
gi|375046811|gb|EHS39366.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
MPAO1/P2]
gi|404348087|gb|EJZ74436.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PAO579]
Length = 373
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 217/363 (59%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+VK+ +++ G+ G HAE+ AL A G +
Sbjct: 9 MARALELARQGLYSTQPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQA---GENA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L+ AGI+V+
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAVQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 126 SGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARSAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+G T+L D+ RLNVR ++ + QP R+++D LR+ P
Sbjct: 186 RARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRV-PLESA 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + R+ +D GHE++ LP+ G VDL +++EL R NE+ +EAG
Sbjct: 245 FYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE L+++P +G + P + +L+ +I+ +G D +
Sbjct: 305 PRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGDDWLV 364
Query: 349 LAR 351
AR
Sbjct: 365 TAR 367
>gi|416164232|ref|ZP_11607164.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis N1568]
gi|433474132|ref|ZP_20431488.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 97021]
gi|433481507|ref|ZP_20438774.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
2006087]
gi|433484569|ref|ZP_20441788.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
2002038]
gi|433485548|ref|ZP_20442751.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 97014]
gi|325127564|gb|EGC50487.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis N1568]
gi|432208011|gb|ELK63993.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 97021]
gi|432218264|gb|ELK74127.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
2006087]
gi|432219655|gb|ELK75491.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
2002038]
gi|432224037|gb|ELK79810.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 97014]
Length = 369
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 144/328 (43%), Positives = 210/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNLG--KVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ K+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++ +LP
Sbjct: 307 LAENLADEIVLYRSPKILGSGKDLLSLP 334
>gi|107103570|ref|ZP_01367488.1| hypothetical protein PaerPA_01004640 [Pseudomonas aeruginosa PACS2]
gi|218889663|ref|YP_002438527.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
LESB58]
gi|386056951|ref|YP_005973473.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
M18]
gi|392982217|ref|YP_006480804.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
DK2]
gi|416867151|ref|ZP_11916027.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
138244]
gi|420137628|ref|ZP_14645593.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
CIG1]
gi|421151999|ref|ZP_15611591.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
ATCC 14886]
gi|421158064|ref|ZP_15617362.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
ATCC 25324]
gi|424939065|ref|ZP_18354828.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
NCMG1179]
gi|451982967|ref|ZP_21931264.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas aeruginosa 18A]
gi|218769886|emb|CAW25647.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
LESB58]
gi|334833753|gb|EGM12796.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
138244]
gi|346055511|dbj|GAA15394.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
NCMG1179]
gi|347303257|gb|AEO73371.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
M18]
gi|392317722|gb|AFM63102.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
DK2]
gi|403249604|gb|EJY63095.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
CIG1]
gi|404526131|gb|EKA36363.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
ATCC 14886]
gi|404550000|gb|EKA58808.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
ATCC 25324]
gi|451759335|emb|CCQ83787.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas aeruginosa 18A]
gi|453043270|gb|EME91002.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PA21_ST175]
Length = 373
Score = 280 bits (715), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 217/363 (59%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+VK+ +++ G+ G HAE+ AL A G +
Sbjct: 9 MARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQA---GENA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L+ AGI+V+
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAVQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 126 SGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARSAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+G T+L D+ RLNVR ++ + QP R+++D LR+ P
Sbjct: 186 RARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRV-PLESA 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + R+ +D GHE++ LP+ G VDL +++EL R NE+ +EAG
Sbjct: 245 FYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE L+++P +G + P + +L+ +I+ +G D +
Sbjct: 305 PRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGDDWLV 364
Query: 349 LAR 351
AR
Sbjct: 365 TAR 367
>gi|416174169|ref|ZP_11609130.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
OX99.30304]
gi|433465800|ref|ZP_20423271.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM422]
gi|433491173|ref|ZP_20448286.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM418]
gi|325129557|gb|EGC52381.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
OX99.30304]
gi|432200896|gb|ELK56984.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM422]
gi|432225732|gb|ELK81472.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM418]
Length = 369
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 210/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L SAGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++ +LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLLSLP 334
>gi|421178771|ref|ZP_15636374.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa E2]
gi|404547869|gb|EKA56849.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa E2]
Length = 373
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 217/363 (59%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+VK+ +++ G+ G HAE+ AL A G +
Sbjct: 9 MARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQA---GENA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L+ AGI+V+
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAVQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 126 SGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARSAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+G T+L D+ RLNVR ++ + QP R+++D LR+ P
Sbjct: 186 RARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRV-PLESA 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + R+ +D GHE++ LP+ G VDL +++EL R NE+ +EAG
Sbjct: 245 FYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE L+++P +G + P + +L+ +I+ +G D +
Sbjct: 305 PRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGDDWLV 364
Query: 349 LAR 351
AR
Sbjct: 365 TAR 367
>gi|410638137|ref|ZP_11348702.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
lipolytica E3]
gi|410142334|dbj|GAC15907.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
lipolytica E3]
Length = 373
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 154/367 (41%), Positives = 228/367 (62%), Gaps = 23/367 (6%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRII-SCGYTKSPGGNHAEIDALLNAAAQGYD 58
M++AL+ AK +SPNP VGCVI + +I G+ G HAE+ AL A G
Sbjct: 14 MSIALKLAKKGQYTTSPNPNVGCVIADDNGVILGQGWHHKAGTPHAEVHALAQA---GTL 70
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPCS+FG TPPC +ALI++G+K+V+ A+ DPNP VSG G+ +L GISV
Sbjct: 71 SSGATAYVTLEPCSHFGRTPPCADALIQAGVKRVVAAMVDPNPTVSGNGLKRLAEHGISV 130
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
GLM+++A ++N GF RM G+PWV +K+A+SLD KT+L N +SQWITS +R D I
Sbjct: 131 SHGLMREQAQQLNRGFIKRMTLGLPWVTVKLAASLDGKTALANGTSQWITSPAARTDVQI 190
Query: 179 WRARSCAILTGIGTVLKDNPRLNVR---------SIKTSH--QPYRIVIDSYLRIDPFFR 227
RA+SCAIL+G GTVL DNP LNVR SI S QP R+++D ++ +
Sbjct: 191 QRAKSCAILSGSGTVLADNPSLNVRYAELGEAKKSINESELRQPLRVILDGKNQLTDNLK 250
Query: 228 VLK-GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
+ G + + P+ R +E + +V + N K+DL A++I L K+++NE+ +E
Sbjct: 251 MFDLEGQTLVLNRLHNPVIRDSVEQI--QVASVGN---KLDLNAMLIALAKKQLNEVWVE 305
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L AL+ + VDEL+LY +P LIG+ N+F + + + L++ ++ +G D
Sbjct: 306 AGGMLAGALVQQNLVDELILYQAPKLIGDKGQNLFVMDELTQMQQAKMLQWSSVRMVGDD 365
Query: 346 IRILARF 352
I+++A+F
Sbjct: 366 IKMVAQF 372
>gi|421566162|ref|ZP_16011920.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM3081]
gi|389606505|emb|CCA45418.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Neisseria meningitidis alpha522]
gi|402340918|gb|EJU76106.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM3081]
Length = 369
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 210/327 (64%), Gaps = 8/327 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNLG--KVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ K+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTL 322
+ E DE++LY SP ++G ++F+L
Sbjct: 307 LAENLADEIVLYRSPKILGSGKDLFSL 333
>gi|15677653|ref|NP_274814.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis MC58]
gi|416198483|ref|ZP_11618959.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis CU385]
gi|433488984|ref|ZP_20446134.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M13255]
gi|433505607|ref|ZP_20462540.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 9506]
gi|433507806|ref|ZP_20464704.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 9757]
gi|433510023|ref|ZP_20466880.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 12888]
gi|433512011|ref|ZP_20468826.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 4119]
gi|7227070|gb|AAF42152.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis MC58]
gi|325139638|gb|EGC62177.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis CU385]
gi|432221313|gb|ELK77124.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M13255]
gi|432239360|gb|ELK94914.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 9757]
gi|432239494|gb|ELK95046.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 9506]
gi|432244961|gb|ELL00440.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 12888]
gi|432245557|gb|ELL01025.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 4119]
Length = 369
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 210/327 (64%), Gaps = 8/327 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNLG--KVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ K+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTL 322
+ E DE++LY SP ++G ++F+L
Sbjct: 307 LAENLADEIVLYRSPKILGSGKDLFSL 333
>gi|421538780|ref|ZP_15984952.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 93003]
gi|402315487|gb|EJU51050.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 93003]
Length = 369
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 209/328 (63%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G +F LP
Sbjct: 307 LAEDLADEIVLYRSPKILGGGSGLFCLP 334
>gi|421563910|ref|ZP_16009722.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM2795]
gi|421906292|ref|ZP_16336192.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Neisseria meningitidis alpha704]
gi|393292593|emb|CCI72111.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Neisseria meningitidis alpha704]
gi|402339529|gb|EJU74743.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM2795]
Length = 369
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 149/330 (45%), Positives = 213/330 (64%), Gaps = 12/330 (3%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAA--AQGY 57
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A AQG
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQAGEMAQG- 68
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
ST ++TLEPCS++G TPPC EAL++SG+ +V++A+ DPNPLV+GKG+A L AGI
Sbjct: 69 ----STAFVTLEPCSHYGRTPPCAEALLRSGVTRVVVAMRDPNPLVAGKGLALLEVAGIK 124
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
+ GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D
Sbjct: 125 TECGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQ 184
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
+ RA SCA+LTGIGTVL DNP+LNVR+ T QP RIV+DS LR+ ++ G S +
Sbjct: 185 VLRAESCAVLTGIGTVLADNPQLNVRAFPTLRQPARIVLDSRLRLPLDSHLVTDGQSPTY 244
Query: 238 TATDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNT 293
AT + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +
Sbjct: 245 IATLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTS 304
Query: 294 ALILEGCVDELLLYISPILIGEAYNMFTLP 323
A + E DE++LY SP ++G ++F+LP
Sbjct: 305 AFLAEDLADEIVLYRSPKILGSGKDLFSLP 334
>gi|385853875|ref|YP_005900389.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
H44/76]
gi|427827734|ref|ZP_18994758.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
H44/76]
gi|316984420|gb|EFV63393.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
H44/76]
gi|325200879|gb|ADY96334.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
H44/76]
Length = 361
Score = 279 bits (714), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 210/327 (64%), Gaps = 8/327 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 2 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 58
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 59 QGATAFVTLEPCSHYGRTPPCAEALVRAGVSRVVAAMRDPNPLVAGKGLALLEAAGIKTE 118
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 119 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 178
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 179 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 238
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNLG--KVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ K+DL ++ L E+ +EAG +L +A
Sbjct: 239 TLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 298
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTL 322
+ E DE++LY SP ++G ++F+L
Sbjct: 299 LAENLADEIVLYRSPKILGSGKDLFSL 325
>gi|313109499|ref|ZP_07795455.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
39016]
gi|386068158|ref|YP_005983462.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
NCGM2.S1]
gi|310881957|gb|EFQ40551.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
39016]
gi|348036717|dbj|BAK92077.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
NCGM2.S1]
Length = 373
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 216/363 (59%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+VK+ +++ G+ G HAE+ AL A G +
Sbjct: 9 MARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQA---GENA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP V G+G+ +L+ AGI+V+
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVGGRGLLRLMQAGIAVQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 126 SGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARSAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+G T+L D+ RLNVR ++ + QP R+++D LR+ P
Sbjct: 186 RARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRV-PLESA 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + R+ +D GHE++ LP+ G VDL +++EL R NE+ +EAG
Sbjct: 245 FYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE L+++P +G + P + +L+ +I+ +G D +
Sbjct: 305 PRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGDDWLV 364
Query: 349 LAR 351
AR
Sbjct: 365 TAR 367
>gi|268683551|ref|ZP_06150413.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
SK-92-679]
gi|268623835|gb|EEZ56235.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae
SK-92-679]
Length = 369
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/328 (44%), Positives = 209/328 (63%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI ++I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGRQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG+ L +AGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 127 CGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G +F LP
Sbjct: 307 LAENLADEIVLYRSPKILGIGSGLFCLP 334
>gi|397662335|ref|YP_006503035.1| riboflavin biosynthesis protein RibD [Taylorella equigenitalis ATCC
35865]
gi|394350514|gb|AFN36428.1| riboflavin biosynthesis protein RibD [Taylorella equigenitalis ATCC
35865]
Length = 387
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 158/366 (43%), Positives = 219/366 (59%), Gaps = 23/366 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYD- 58
M LA + + K PNP VGCVIV II G T+ G +HAEI AL +A +G++
Sbjct: 9 MRLAYEASLKTRFLPDPNPCVGCVIVHNDEIIGEGATQIAGSHHAEIMALKDARMRGHED 68
Query: 59 -VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+ ++ +Y+TLEPCS+FG TPPCT+ALI +GIK V+IA DPNP+V G G+ L S GI
Sbjct: 69 LIADAILYVTLEPCSHFGRTPPCTDALISNGIKHVVIASPDPNPIVGGNGIRILRSNGIK 128
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V+ G M +E E+N+GFFSRM RG PWVR KIASSLD + SL N S+WIT +ESRND H
Sbjct: 129 VEVGFMLEEVLELNLGFFSRMIRGTPWVRTKIASSLDGRISLTNGQSKWITCEESRNDGH 188
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI--DPFFRVLKGGGSC 235
WRARS +LTG GTVL DNP+LNVR T P ++D L I P +
Sbjct: 189 YWRARSSIVLTGAGTVLADNPKLNVRHFNTPRAPLIGIVDRELNIITKPKLSIFSNPKVY 248
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNL----------GKVDLQAVIIELGKRKINELHI 285
+F + ++DLG ++ L N+ GK++L ++ L ++NE+H+
Sbjct: 249 VFG------EMAKVQDLG--LVDLSENIELVGLGCLDDGKLNLSELLEFLNSLQVNEIHL 300
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG LNT+ G +DELL Y +P+++G + F + S+ KL+ +I+ I +
Sbjct: 301 EAGSGLNTSFYEAGLIDELLWYQAPLVLGNCNSPFNIKEVESIPVDNKLEIFDIKSIKNN 360
Query: 346 IRILAR 351
+R+ R
Sbjct: 361 VRLRIR 366
>gi|387890191|ref|YP_006320489.1| riboflavin biosynthesis protein RibD [Escherichia blattae DSM 4481]
gi|414595545|ref|ZP_11445164.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia blattae NBRC 105725]
gi|386925024|gb|AFJ47978.1| riboflavin biosynthesis protein RibD [Escherichia blattae DSM 4481]
gi|403193508|dbj|GAB82816.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia blattae NBRC 105725]
Length = 367
Score = 279 bits (713), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 215/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A + ++PNP VGCVIV++ I+ G+ G HAE+ AL A G
Sbjct: 7 MARALQLAGRGCFTTAPNPNVGCVIVRDGEIVGEGFHYRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI++G+ +V+ A+ DPNP V+G+G+ +L AG+ V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCDALIEAGVSRVVAAMQDPNPQVAGRGLHRLKQAGVEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM+ EA +N GFF RM+ G PWV++K+ +SLD +T++ + SQWITS +SR D
Sbjct: 124 HGLMRHEAEALNRGFFKRMRTGFPWVQVKLGASLDGRTAMASGESQWITSPQSRRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RARS AILT TVL D+P L VR + QP R+VID R+ P R
Sbjct: 184 RARSAAILTSSATVLADDPSLTVRWDELDDETRAIYPREDVRQPVRVVIDGQSRVTPAHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G+ P + E +++P + G +DL ++++LGKR+IN + +EA
Sbjct: 244 LVTQPGNTWLVR---PQADALSWPESVEQLIIPQHQGHIDLVLLLMQLGKRQINSVWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G QL AL+ G VDEL+LY++P L+G +A + LP +L F +I+++GPD+
Sbjct: 301 GPQLAGALLQAGVVDELILYVAPKLLGSDARGLCQLPGLTALADAPAFSFSQIRRVGPDL 360
>gi|319778563|ref|YP_004129476.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella
equigenitalis MCE9]
gi|317108587|gb|ADU91333.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Taylorella
equigenitalis MCE9]
Length = 379
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 154/351 (43%), Positives = 213/351 (60%), Gaps = 22/351 (6%)
Query: 15 SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYD--VYNSTVYITLEPCS 72
PNP VGCVIV II G T+ G +HAEI AL +A +G++ + ++ +Y+TLEPCS
Sbjct: 16 DPNPCVGCVIVHNDEIIGEGATQIAGSHHAEIMALKDARMRGHEDLIADAILYVTLEPCS 75
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPCT+ALI +GIK V+IA DPNP+V G G+ L S GI V+ G M +E E+N+
Sbjct: 76 HFGRTPPCTDALISNGIKHVVIASPDPNPIVGGNGIRILRSNGIKVEVGFMLEEVLELNL 135
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GFFSRM RG PWVR KIASSLD + SL N S+WIT +ESRND H WRARS +LTG GT
Sbjct: 136 GFFSRMIRGTPWVRTKIASSLDGRISLTNGQSKWITCEESRNDGHYWRARSSIVLTGAGT 195
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRI--DPFFRVLKGGGSCIFTATDLPMKRKILE 250
VL DNP+LNVR T P ++D L I P + +F + ++
Sbjct: 196 VLADNPKLNVRHFNTPRAPLIGIVDRELNIITKPKLSIFSNPKVYVFG------EMAKVQ 249
Query: 251 DLGHEVIVLPNNL----------GKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
DLG ++ L N+ GK++L ++ L ++NE+H+EAG LNT+ G
Sbjct: 250 DLG--LVDLSENIELVGLGCLDDGKLNLSELLEFLNSLQVNEIHLEAGSGLNTSFYEAGL 307
Query: 301 VDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+DELL Y +P+++G + F + S+ KL+ +I+ I ++R+ R
Sbjct: 308 IDELLWYQAPLVLGNCNSPFNIKEVESIPVDNKLEIFDIKSIKNNVRLRIR 358
>gi|385855832|ref|YP_005902345.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M01-240355]
gi|325204773|gb|ADZ00227.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M01-240355]
Length = 361
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/328 (44%), Positives = 210/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 2 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 58
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 59 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAGIKTE 118
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 119 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTTLSDGSSFWITGEDARADVQVL 178
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 179 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 238
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 239 TLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAF 298
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++ +LP
Sbjct: 299 LAEDLADEIVLYRSPKILGSGKDLLSLP 326
>gi|433469946|ref|ZP_20427354.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 98080]
gi|432201539|gb|ELK57619.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 98080]
Length = 369
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 146/327 (44%), Positives = 210/327 (64%), Gaps = 8/327 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTTLSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTL 322
+ E DE++LY SP ++G ++F+L
Sbjct: 307 LAENLADEIVLYRSPKILGSGKDLFSL 333
>gi|307546181|ref|YP_003898660.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581]
gi|307218205|emb|CBV43475.1| riboflavin biosynthesis protein RibD [Halomonas elongata DSM 2581]
Length = 384
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 225/365 (61%), Gaps = 18/365 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + ++PNPRVGCV+VKE R+I G+ + G HAEI AL NA G
Sbjct: 11 MARALRLARHGLYTTAPNPRVGCVLVKEGRVIGEGWHERAGEPHAEIHALRNA---GEAA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC AL+++G+ +V++A+ DPNP V+G+G+ +L AGI V+
Sbjct: 68 RGATAYVTLEPCSHQGRTGPCAVALVEAGVARVVVAMRDPNPQVAGRGIERLRQAGIEVE 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+G+++ EA+ +N GF +RM RG P+VRMK+A SLD +T++ + SQWIT +R +
Sbjct: 128 EGVLEAEAHALNSGFIARMARGRPFVRMKMAMSLDGRTAMRSGESQWITGPCARREVQRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK---------TSHQPYRIVIDSYLRIDPFFRVLK 230
RARS ++TG+ +V+ DN RL VR+ + S QP R+V+DS LR+ L+
Sbjct: 188 RARSSVVMTGVESVIFDNSRLTVRAEQLELDNAEAIASRQPMRVVVDSRLRLPLAAACLR 247
Query: 231 GGGSCIFTATD--LPMKRKILEDLGHEVIVLP-NNLGKVDLQAVIIELGK-RKINELHIE 286
G + D R+ LE G EV+VLP G+VDL+A++ L + NE+ +E
Sbjct: 248 EPGRTLVATVDGHDDEHREKLEQAGAEVVVLPAEEGGRVDLEALLSYLASHEEANEVLLE 307
Query: 287 AGYQLNTALILEGCVDELLLYISPILI-GEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
G L A++ G VDE+ L+++P L+ GEA +F LP +D++ L +I+ +G D
Sbjct: 308 TGATLAGAMLDAGLVDEMQLFVAPTLLGGEARPLFELPGLTRMDEQRPLDIRDIRAVGDD 367
Query: 346 IRILA 350
RI A
Sbjct: 368 WRITA 372
>gi|421541112|ref|ZP_15987242.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 93004]
gi|433467860|ref|ZP_20425309.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 87255]
gi|402315905|gb|EJU51459.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 93004]
gi|432201412|gb|ELK57493.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 87255]
Length = 369
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/328 (44%), Positives = 210/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTTLSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++ +LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLLSLP 334
>gi|385324768|ref|YP_005879207.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)] [Neisseria meningitidis 8013]
gi|261393155|emb|CAX50767.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)] [Neisseria meningitidis 8013]
Length = 369
Score = 278 bits (711), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/328 (44%), Positives = 210/328 (64%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MQNALKLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++ +LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLLSLP 334
>gi|410087040|ref|ZP_11283745.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Morganella
morganii SC01]
gi|409766269|gb|EKN50363.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Morganella
morganii SC01]
Length = 370
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 223/364 (61%), Gaps = 24/364 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++PNP VGCVIV++ I+ GY + G HAE+ AL A G
Sbjct: 9 MARALELAALGRFTTAPNPNVGCVIVRDGEIVGEGYHQRAGEPHAEVHALRMA---GDKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 66 RGATAYVTLEPCSHHGRTPPCAEALINAGVSRVVAAMQDPNPQVAGRGLFKLREAGIEVS 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ +EA +N GFF RM+ G P++++K+A+S+D KT+L N SQWITSK +R D +
Sbjct: 126 HGVLMQEAEALNKGFFKRMRTGFPYIQLKMAASIDGKTALANGESQWITSKAARQDVQQF 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P L VR S++ S+ QP RI+ DS R+ R
Sbjct: 186 RAQAGAILSTSATVLADDPGLTVRHADFPASLQQSYPEADIRQPVRIITDSRQRVTAQHR 245
Query: 228 VLKGGGSCIF--TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
V + GSC TA+ + +E++ +LP N VDL ++++LGKR IN +
Sbjct: 246 VTQLPGSCWLARTASQPDNWQGDVEEM-----ILPENGSGVDLVLLMMQLGKRNINHIWT 300
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
E G + AL+ G DE++LY++P ++G +A ++FTLPP L +L+ + +GP
Sbjct: 301 ECGSHMAGALLKAGLADEIVLYLAPKILGSDAQDLFTLPPLAHLRDAPQLRIDDCTMVGP 360
Query: 345 DIRI 348
D+R+
Sbjct: 361 DLRL 364
>gi|421545125|ref|ZP_15991190.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM140]
gi|421547175|ref|ZP_15993213.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM183]
gi|421548145|ref|ZP_15994173.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM2781]
gi|421553380|ref|ZP_15999343.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM576]
gi|402321538|gb|EJU57011.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM183]
gi|402321808|gb|EJU57280.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM140]
gi|402326867|gb|EJU62265.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM2781]
gi|402328288|gb|EJU63665.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis NM576]
Length = 369
Score = 278 bits (710), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 146/329 (44%), Positives = 211/329 (64%), Gaps = 12/329 (3%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAA--AQGY 57
M AL+ A L ++SPNPRVGCVI +++ G+ G HAE+ AL A AQG
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQAGEMAQG- 68
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L AGI
Sbjct: 69 ----ATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEVAGIK 124
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
+ GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D
Sbjct: 125 TECGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQ 184
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
+ RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S +
Sbjct: 185 VLRAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTY 244
Query: 238 TATDLPMKRKI--LEDLGHEVIVLPNNLG--KVDLQAVIIELGKRKINELHIEAGYQLNT 293
AT + ++ + H I++P+ K+DL ++ L E+ +EAG +L +
Sbjct: 245 IATLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTS 304
Query: 294 ALILEGCVDELLLYISPILIGEAYNMFTL 322
A + E DE++LY SP ++G ++F+L
Sbjct: 305 AFLAENLADEIVLYRSPKILGSGKDLFSL 333
>gi|355639264|ref|ZP_09051066.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. 2_1_26]
gi|354832119|gb|EHF16120.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. 2_1_26]
Length = 373
Score = 278 bits (710), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 138/363 (38%), Positives = 216/363 (59%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+VK+ +++ G+ G HAE+ AL A G +
Sbjct: 9 MARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQA---GENA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L+ AGI+V+
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAVQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 126 SGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARSAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+G T+L D+ RLNVR ++ + QP R+++D LR+ P
Sbjct: 186 RARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRV-PLESA 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + R+ +D GHE++ LP+ G VDL +++EL R NE+ +EAG
Sbjct: 245 FYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLVELAARGANEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE L+++P +G + P + +L +I+ +G D +
Sbjct: 305 PRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLTRMADAAQLLIDDIRAVGDDWLV 364
Query: 349 LAR 351
AR
Sbjct: 365 TAR 367
>gi|419756849|ref|ZP_14283194.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PADK2_CF510]
gi|384396604|gb|EIE43022.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PADK2_CF510]
Length = 373
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 216/363 (59%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+VK+ +++ G+ G HAE+ AL A G +
Sbjct: 9 MARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQA---GENA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L+ AGI+V+
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAVQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 126 SGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARSAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+ T+L D+ RLNVR ++ + QP R+++D LR+ P
Sbjct: 186 RARSSVVLSAADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRV-PLESA 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + R+ +D GHE++ LP+ G VDL +++EL R NE+ +EAG
Sbjct: 245 FYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE L+++P +G + P + +L+ +I+ +G D +
Sbjct: 305 PRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGDDWLV 364
Query: 349 LAR 351
AR
Sbjct: 365 TAR 367
>gi|268600600|ref|ZP_06134767.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID18]
gi|291044592|ref|ZP_06570301.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI2]
gi|268584731|gb|EEZ49407.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae PID18]
gi|291011486|gb|EFE03482.1| riboflavin biosynthesis protein RibD [Neisseria gonorrhoeae DGI2]
Length = 369
Score = 277 bits (709), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 149/331 (45%), Positives = 207/331 (62%), Gaps = 14/331 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALDLADLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG+ L +AGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGLVLLKAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +E+R D +
Sbjct: 127 CGLLENKARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEEARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P R+L G S A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPDSRLLTDGQSPTLIA 246
Query: 240 TDLPMKR-----KILEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLN 292
T ++R + H I++P+ GK+DL ++ L E+ +EAG +L
Sbjct: 247 T---LERNEDRLRPYRKHAHVRILMPSETAGGKIDLHRLMRLLAGEGYGEVMVEAGAKLT 303
Query: 293 TALILEGCVDELLLYISPILIGEAYNMFTLP 323
+A + E DE++LY SP ++G +F LP
Sbjct: 304 SAFLAENLADEIVLYRSPKILGIGSGLFCLP 334
>gi|381401829|ref|ZP_09926721.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Kingella
kingae PYKK081]
gi|380833228|gb|EIC13104.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Kingella
kingae PYKK081]
Length = 360
Score = 277 bits (709), Expect = 5e-72, Method: Compositional matrix adjust.
Identities = 149/338 (44%), Positives = 207/338 (61%), Gaps = 9/338 (2%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++SPNPRVGCVI +II G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FSTSPNPRVGCVIAHGSQIIGQGFHVQAGSPHAEVHAIRQA---GELARGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LI +G+ +V+ A+ DPNPLV+GKG+A L +AGI V+QGL++ EA ++N
Sbjct: 81 SHYGRTPPCAEGLIAAGVSRVVAAMTDPNPLVAGKGLAMLQAAGIVVEQGLLEHEARQLN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF SR++R P+V +KIA+SLD KT+L N SQWIT +R D I RA+SCA+LTGIG
Sbjct: 141 RGFLSRIERNRPFVSLKIAASLDGKTALSNGQSQWITGAAARADVQIQRAQSCAVLTGIG 200
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILED 251
TVL DNPRLNVR T QP R+V+DS LR +++ G + T P +K
Sbjct: 201 TVLADNPRLNVRDFPTVRQPLRVVLDSQLRTPESSHIIQDGQRTLIITTS-PDTQKFAAY 259
Query: 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPI 311
E+ P + L V+ EL +R I EL IEAG L +A + + VDE++ Y +
Sbjct: 260 ANVEISKQP---APISLPEVLHELAQRGIGELMIEAGSHLASAFLQQDLVDEIVYYQASK 316
Query: 312 LIGE-AYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDIR 347
L+G A F LP + + L + + + ++G DI+
Sbjct: 317 LLGNTARGAFLLPENDNVLRQNPAWQTISLDRVGDDIK 354
>gi|49088842|gb|AAT51612.1| PA4056, partial [synthetic construct]
Length = 374
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 216/363 (59%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+VK+ +++ G+ G HAE+ AL A G +
Sbjct: 9 MARALELARQGLYSTQPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQA---GENA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L+ AGI+V+
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAVQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 126 SGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARSAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
ARS +L+G T+L D+ RLNVR ++ + QP R+++D LR+ P
Sbjct: 186 SARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQPLRVLVDGRLRV-PLESA 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + R+ +D GHE++ LP+ G VDL +++EL R NE+ +EAG
Sbjct: 245 FYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE L+++P +G + P + +L+ +I+ +G D +
Sbjct: 305 PRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGDDWLV 364
Query: 349 LAR 351
AR
Sbjct: 365 TAR 367
>gi|423106944|ref|ZP_17094639.1| riboflavin biosynthesis protein RibD [Klebsiella oxytoca 10-5243]
gi|376389070|gb|EHT01762.1| riboflavin biosynthesis protein RibD [Klebsiella oxytoca 10-5243]
Length = 367
Score = 277 bits (708), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 145/352 (41%), Positives = 215/352 (61%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKAQGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L G+ V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCEALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQEGVDVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PW+++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWIQLKMGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + + QP RIVIDS+ R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWDELNAETQALYPQENLRQPLRIVIDSHNRVTPQHRIVQQAGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F T +R+ E + +++P + G++DL ++++LGK++IN + +EAG L AL
Sbjct: 252 LFARTR-EDERQWPESI--RTLLVPEHNGRLDLVLLMMQLGKQQINSIWVEAGPTLAGAL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G +A + LP L + KF+EI+ +GPDI
Sbjct: 309 LQAGLVDELIVYIAPKLLGSDARGLCALPGLEKLAQAPHFKFNEIRHVGPDI 360
>gi|421083023|ref|ZP_15543902.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Pectobacterium wasabiae CFBP 3304]
gi|401702249|gb|EJS92493.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Pectobacterium wasabiae CFBP 3304]
Length = 388
Score = 277 bits (708), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 219/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 27 MARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMA---GEHA 83
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 84 RGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGITVS 143
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M EA ++N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 144 HGVMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 203
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR ++ QP R+++DS R+ P R
Sbjct: 204 RAESAAILSSSATVLADDPSLTVRWLELDADVQKRYSEADLRQPVRVIVDSQRRVTPQHR 263
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V+ G + G E ++LP + G VDL A+++ LG+R+IN + +EA
Sbjct: 264 VVSQPGETWLARVQADEQ---AWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINSVWVEA 320
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+GE A ++ LP L + + E+++IGPD+
Sbjct: 321 GASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIAEVRQIGPDL 380
Query: 347 RI 348
R+
Sbjct: 381 RL 382
>gi|385337446|ref|YP_005891319.1| bifunctional riboflavin biosynthesis
diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Neisseria meningitidis WUE 2594]
gi|433476234|ref|ZP_20433569.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 88050]
gi|433514122|ref|ZP_20470906.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 63049]
gi|433516346|ref|ZP_20473109.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
2004090]
gi|433518246|ref|ZP_20474986.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 96023]
gi|433523441|ref|ZP_20480109.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 97020]
gi|433527582|ref|ZP_20484194.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM3652]
gi|433529775|ref|ZP_20486370.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM3642]
gi|433531970|ref|ZP_20488537.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
2007056]
gi|433535264|ref|ZP_20491796.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
2001212]
gi|319409860|emb|CBY90173.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase) and
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase) [Neisseria meningitidis WUE 2594]
gi|432208089|gb|ELK64068.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 88050]
gi|432246009|gb|ELL01471.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 63049]
gi|432251467|gb|ELL06834.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
2004090]
gi|432251984|gb|ELL07344.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 96023]
gi|432261498|gb|ELL16746.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 97020]
gi|432266482|gb|ELL21665.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM3652]
gi|432268615|gb|ELL23782.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
2007056]
gi|432268867|gb|ELL24032.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
NM3642]
gi|432269896|gb|ELL25044.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
2001212]
Length = 369
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 146/328 (44%), Positives = 207/328 (63%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +++ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G +F LP
Sbjct: 307 LAEDLADEIVLYRSPKILGGGSGLFCLP 334
>gi|152986432|ref|YP_001346431.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
PA7]
gi|150961590|gb|ABR83615.1| riboflavin biosynthesis protein RibD [Pseudomonas aeruginosa PA7]
Length = 373
Score = 276 bits (707), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 215/363 (59%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+V++ +++ G+ G HAE+ AL A G
Sbjct: 9 MARALELARQGLYSTHPNPRVGCVLVRDGQVVGEGWHVRAGEPHAEVHALRQA---GEKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L+ AGI+V
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAVH 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 126 SGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARSAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+G T+L D+ RLNVR ++ + QP R+++D LR+ P
Sbjct: 186 RARSSVVLSGADTLLADDARLNVRPDELGLDAELTALAAARQPLRVLVDGRLRV-PLESA 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + R+ +D GHE++ LP+ G VDL +++EL R NE+ +EAG
Sbjct: 245 FYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE L+++P +G + P + +L+ +I+ +G D +
Sbjct: 305 PRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAELEIDDIRAVGDDWLV 364
Query: 349 LAR 351
AR
Sbjct: 365 TAR 367
>gi|119474644|ref|ZP_01614997.1| riboflavin-specific deaminase/reductase [marine gamma
proteobacterium HTCC2143]
gi|119450847|gb|EAW32080.1| riboflavin-specific deaminase/reductase [marine gamma
proteobacterium HTCC2143]
Length = 370
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 224/364 (61%), Gaps = 17/364 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LA+ A+ + +SPNPRVGC+IV+ +II GY G HAE++A+ +A +V
Sbjct: 7 MQLAIDLAEKGLYTASPNPRVGCIIVRNGQIIGRGYHVRTGQAHAEVNAIADAG----NV 62
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
++TVY+TLEPCS+ G TPPC++ALI + + +V++A+ DPNPLV+G G+A+L AGI V+
Sbjct: 63 EDATVYVTLEPCSHTGRTPPCSDALITANVARVVVAMADPNPLVAGSGIAKLEQAGIVVE 122
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ +A ++N G+ RM+ G+PWVR+K+A SLD +T++ + SQWIT K +R+D
Sbjct: 123 LGLLASQARQLNPGYIKRMELGLPWVRVKLAMSLDGRTAMASGESQWITGKRARSDVQQL 182
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK-----------TSHQPYRIVIDSYLRIDPFFRV 228
RARSC +++G+ T++ D+ L VR+ + QP R+V+DS LR+ ++
Sbjct: 183 RARSCVVMSGVNTIIADDASLTVRADELGLEAGLAKEAAEQQPVRVVLDSNLRLPTTAKI 242
Query: 229 LKGGGSC-IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
L G I TA + + + L +G EV+ N G+VDL V+ L + +NE+ +EA
Sbjct: 243 LSQPGRLIIMTAVENSVAEQALVAMGAEVVHCGNKNGQVDLDNVLQFLAEMSVNEILVEA 302
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
G L+ AL G VD +Y++P L+G P ++ ++ +L+ I+ IG D R
Sbjct: 303 GATLSGALAEAGLVDHYTVYMAPTLLGNTARPLLQLPLATMAEQQRLQIDSIEPIGEDWR 362
Query: 348 ILAR 351
I +R
Sbjct: 363 IDSR 366
>gi|304388339|ref|ZP_07370452.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ATCC
13091]
gi|304337656|gb|EFM03812.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis ATCC
13091]
Length = 369
Score = 276 bits (707), Expect = 8e-72, Method: Compositional matrix adjust.
Identities = 143/327 (43%), Positives = 208/327 (63%), Gaps = 8/327 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +++ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQVVGQGFHVKAGEPHAEVHALHQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ P ++ G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPPNSHLVTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNLG--KVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ K+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTL 322
+ E DE++LY SP ++G ++F+L
Sbjct: 307 LAENLADEIVLYRSPKILGSGKDLFSL 333
>gi|254242738|ref|ZP_04936060.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
2192]
gi|126196116|gb|EAZ60179.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
2192]
Length = 373
Score = 276 bits (707), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 216/363 (59%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+VK+ +++ G+ G HAE+ AL A G +
Sbjct: 9 MARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQA---GENA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L+ AGI+V+
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAVQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 126 SGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARSAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+G T+L D+ RLNVR ++ + Q R+++D LR+ P
Sbjct: 186 RARSSVVLSGADTLLADDARLNVRPDELGLNAELTALAAARQSLRVLVDGRLRV-PLESA 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + R+ +D GHE++ LP+ G VDL +++EL R NE+ +EAG
Sbjct: 245 FYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE L+++P +G + P + +L+ +I+ +G D +
Sbjct: 305 PRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGDDWLV 364
Query: 349 LAR 351
AR
Sbjct: 365 TAR 367
>gi|92114703|ref|YP_574631.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Chromohalobacter salexigens DSM 3043]
gi|91797793|gb|ABE59932.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Chromohalobacter salexigens DSM 3043]
Length = 380
Score = 276 bits (707), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 225/365 (61%), Gaps = 17/365 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + PNPRVGCV+V RI+ GY GG HAE+ AL A G
Sbjct: 10 MARALQLARHGCYTTHPNPRVGCVVVNAGRIVGEGYHAYAGGPHAEVHALREA---GDAA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +ALI +G+++V++A+ DPNP V+G+GVA L AGI V
Sbjct: 67 AGATVYVTLEPCSHHGRTPPCAQALIDAGVRRVVVAMVDPNPQVAGRGVAMLREAGIEVD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ +A +N+GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R +
Sbjct: 127 VGLLATDAEALNVGFVKRMRDGLPFVRLKMAMSLDGRTAMASGESQWITGASARTEVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPFFRVLK 230
RAR+ A++TG+ +V+ DN RL VR+ + + QP R+V+DS LR+ L+
Sbjct: 187 RARASAVMTGVDSVIFDNSRLTVRADQLALEDGETIARRQPLRVVVDSRLRLPLAAACLR 246
Query: 231 G-GGSCIFTATDLPMKRKILEDLGHEVIVLP-NNLGKVDLQAVIIELGK-RKINELHIEA 287
G + + T T +R+ L G EV++LP + G+VDL+A++ L + + NE+ +E
Sbjct: 247 EPGRTLVATCTPDEARREALSRAGAEVLMLPADEGGRVDLRALLAYLARDEQCNEVLLET 306
Query: 288 GYQLNTALILEGCVDELLLYISPILI-GEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L A++ +DE+ L+++P L+ GEA +F LP + ++ L +I+ +G D
Sbjct: 307 GATLAGAMLDLEAIDEMHLFVAPTLLGGEARPLFALPGLERMAQQRPLHIDDIRAVGQDW 366
Query: 347 RILAR 351
RI+AR
Sbjct: 367 RIVAR 371
>gi|114319537|ref|YP_741220.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Alkalilimnicola ehrlichii MLHE-1]
gi|114225931|gb|ABI55730.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Alkalilimnicola ehrlichii MLHE-1]
Length = 369
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 145/341 (42%), Positives = 215/341 (63%), Gaps = 7/341 (2%)
Query: 16 PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFG 75
PNP VGCV+V++ I+ G+ + G HAE AL A Q +T Y+TLEPCS+ G
Sbjct: 28 PNPAVGCVLVRDGLIVGEGWHERAGEPHAEAMALHRAGEQ---ASGATAYVTLEPCSHHG 84
Query: 76 YTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFF 135
TPPC+EAL+ +G+ +V+ A+ DPNP V+G+G+ +L +AG+ V GLM ++A +N GF
Sbjct: 85 RTPPCSEALLAAGVVRVVAAMTDPNPQVAGRGLRRLRAAGLEVATGLMAEQAAALNPGFT 144
Query: 136 SRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLK 195
RM+ G PW+R+K A+SLD +T++ + S+WITS ++R D H WRARS A+LTGIGTVL
Sbjct: 145 QRMRTGRPWLRLKSAASLDGRTAMASGESRWITSPQARADVHRWRARSDAMLTGIGTVLA 204
Query: 196 DNPRLNVR--SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKR-KILEDL 252
D+PRL+VR I+ QP R V+D LR +L+G G+ +F D+ + + L D
Sbjct: 205 DDPRLDVRDAGIEAPRQPRRCVLDRDLRTPADAVLLRGEGATLFHGPDVAAGQIRRLTDA 264
Query: 253 GHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPIL 312
G + LP G++DL A + LG + NE+ +EAG L AL G VDE LLY++P L
Sbjct: 265 GAHCVALPLADGRLDLGAALDWLGGQGCNEVLVEAGPTLGGALSRAGLVDEWLLYLAPHL 324
Query: 313 IGEAYN-MFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+G+A + P ++ ++ L+ + + +GPD+R+ R
Sbjct: 325 MGDAARPLLHWPGLETMSQRQPLRVQDCRLVGPDLRLTLRL 365
>gi|407694657|ref|YP_006819445.1| riboflavin biosynthesis protein RibD [Alcanivorax dieselolei B5]
gi|407251995|gb|AFT69102.1| Riboflavin biosynthesis protein RibD [Alcanivorax dieselolei B5]
Length = 371
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 221/360 (61%), Gaps = 16/360 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + + PNPRVGCV+ K +II+ G+ G HAE AL A G +
Sbjct: 11 MIRALQLARQGLYTTDPNPRVGCVLAKGGQIIAEGFHARAGEPHAERHALTTA---GAEA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC +ALIK+G+ +V+ A+ DPNP V+G G +L +AGI V+
Sbjct: 68 RGATAYVTLEPCSHTGRTGPCADALIKAGVARVVAAMEDPNPQVAGNGFGKLRAAGIQVE 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EA +N GF RM+ PWVR+K+A+S+D +T++ + SQWIT ++R D
Sbjct: 128 VGLQESEARALNPGFIRRMRGERPWVRIKVAASVDGRTAMASGESQWITGPQAREDVQRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK---------TSHQPYRIVIDSYLRIDPFFRVLK 230
RARS A++TGIGTVL D P VR+ + QP R+++D LR V+
Sbjct: 188 RARSSAVITGIGTVLADRPSYTVRADQWRLGEYGSDQVRQPLRVILDRRLRTPVDVPVVT 247
Query: 231 GGGSCIFTATDL-PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGY 289
G C+ + P +++ LE G EV+ LP++ VDL+A++ +L +R+ NE+ +E G
Sbjct: 248 TAGPCLVVGGEAHPERQRALEAAGAEVMHLPSSGSGVDLKALLADLSRRECNEILVECGA 307
Query: 290 QLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L A + E DEL++Y++P L+G +A + +L P + +K+ L++ +++++G D+R+
Sbjct: 308 TLAGAFVREALFDELIVYMAPALLGTDARGLLSL-PLVRMAEKVSLRWADVRQLGNDLRL 366
>gi|421551452|ref|ZP_15997443.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 69166]
gi|433472076|ref|ZP_20429454.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 68094]
gi|433478364|ref|ZP_20435674.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 70012]
gi|433526890|ref|ZP_20483512.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 69096]
gi|433539548|ref|ZP_20496015.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 70030]
gi|402327329|gb|EJU62719.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 69166]
gi|432206702|gb|ELK62703.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 68094]
gi|432213360|gb|ELK69279.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 70012]
gi|432258943|gb|ELL14223.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 69096]
gi|432271568|gb|ELL26691.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 70030]
Length = 369
Score = 276 bits (706), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 146/328 (44%), Positives = 209/328 (63%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MQNALKLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L SAGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF S ++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLENKARELNRGFLSSIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++ +LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLLSLP 334
>gi|350571008|ref|ZP_08939348.1| riboflavin biosynthesis protein RibD [Neisseria wadsworthii 9715]
gi|349793788|gb|EGZ47616.1| riboflavin biosynthesis protein RibD [Neisseria wadsworthii 9715]
Length = 368
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 148/320 (46%), Positives = 209/320 (65%), Gaps = 15/320 (4%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAA--AQGYDVYNSTVYITLE 69
++SPNPRVGCVI +I+ G+ G HAE+ AL A AQG +T Y+TLE
Sbjct: 22 FSTSPNPRVGCVIAHGDQIVGQGFHIRAGSPHAEVYALQQAGKLAQG-----ATAYVTLE 76
Query: 70 PCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYE 129
PCS+ G TPPC EALIK+ +K+V+ A+ DPNPLVSGKG+ L +GI + GL++++A
Sbjct: 77 PCSHHGRTPPCAEALIKAKVKRVVAAMTDPNPLVSGKGLTLLTQSGIQTESGLLEQKARL 136
Query: 130 INIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTG 189
+N GF SR++RG P++R+K A+SLD KT+L N SQWIT + +R+D I RA SCA+LTG
Sbjct: 137 LNRGFLSRIERGRPFIRLKCAASLDGKTALSNGQSQWITGEAARSDVQILRAESCAVLTG 196
Query: 190 IGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLR--IDPFFRVLKGGGSCIFTATDLPMKRK 247
IGTVL DNP+LNVR+ T QP RI++DS L+ +D F V++ S T + +K
Sbjct: 197 IGTVLADNPKLNVRTFPTLRQPIRIILDSRLQTPLDSF--VIQDSNSLSIICTLVSDTQK 254
Query: 248 ILEDLGH---EVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDEL 304
L H ++ L G+++L ++ +L ++ I E+ +EAG +LNTALI G VDE+
Sbjct: 255 HAPYLKHPNTSILCLSEKDGRINLNELMQQLAQQGIGEILVEAGAKLNTALIEAGLVDEI 314
Query: 305 LLYISPILIG-EAYNMFTLP 323
+LY S ++G A +F LP
Sbjct: 315 VLYQSAKMLGNSAKGLFLLP 334
>gi|421492875|ref|ZP_15940234.1| hypothetical protein MU9_1404 [Morganella morganii subsp. morganii
KT]
gi|455740416|ref|YP_007506682.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Morganella
morganii subsp. morganii KT]
gi|400192980|gb|EJO26117.1| hypothetical protein MU9_1404 [Morganella morganii subsp. morganii
KT]
gi|455421979|gb|AGG32309.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Morganella
morganii subsp. morganii KT]
Length = 370
Score = 276 bits (705), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 150/362 (41%), Positives = 221/362 (61%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++PNP VGCVIV++ I+ GY + G HAE+ AL A G
Sbjct: 9 MARALELAALGRFTTAPNPNVGCVIVRDGEIVGEGYHQRAGEPHAEVHALRMA---GDKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 66 RGATAYVTLEPCSHHGRTPPCAEALINAGVSRVVAAMQDPNPQVAGRGLFKLREAGIEVS 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ +EA +N GFF RM+ G P++++K+A+S+D KT+L N SQWITSK +R D +
Sbjct: 126 HGVLMQEAEALNKGFFKRMRTGFPYIQLKMAASIDGKTALANGESQWITSKAARQDVQQF 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P L VR S++ S+ QP RI+ DS R+ R
Sbjct: 186 RAQAGAILSTSATVLADDPGLTVRHADFPASLQQSYPETDIRQPVRIITDSRQRVTAQHR 245
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V + GSC + A D+ E ++LP N VDL ++++LGKR IN + E
Sbjct: 246 VTQLPGSC-WLARIASQPDNWQGDV--EEMILPENGCGVDLVLLMMQLGKRNINHIWTEC 302
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G + AL+ G DE++LY++P ++G +A ++FTLPP L +L+ + +GPD+
Sbjct: 303 GSHMAGALLKAGLADEIVLYLAPKILGSDAQDLFTLPPLAHLRDAPQLRIDDCTMVGPDL 362
Query: 347 RI 348
R+
Sbjct: 363 RL 364
>gi|421555520|ref|ZP_16001450.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 98008]
gi|402329757|gb|EJU65111.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis 98008]
Length = 369
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 207/327 (63%), Gaps = 8/327 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 METALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNLG--KVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ K+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTL 322
+ E DE++LY SP ++G ++F+L
Sbjct: 307 LAENLADEIVLYRSPKILGSGKDLFSL 333
>gi|238795566|ref|ZP_04639081.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
mollaretii ATCC 43969]
gi|238720685|gb|EEQ12486.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
mollaretii ATCC 43969]
Length = 369
Score = 275 bits (704), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 220/365 (60%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A++ + PNP VGCV+V++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARMGCFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 65 HGATAYVTLEPCSHHGRTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAVD 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P++++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL DNP L VR + QP RI++DS R+ P +
Sbjct: 185 RAESAAILSTSATVLADNPSLTVRWDELDAETQTLYPRAALRQPIRIILDSQNRVTPQHK 244
Query: 228 VLKGGGSCIFTATDL---PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
V++ G C D P I E ++LP + VDL ++++LGKR+IN +
Sbjct: 245 VIQQDGPCWLARVDADEQPWPENI------EQLLLPRHGNGVDLVLLMMQLGKRQINSVW 298
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG QL AL+ G VDEL+LYI+P L+G +A + L SL + + F +++++G
Sbjct: 299 VEAGPQLAGALLEAGVVDELILYIAPKLLGSDARGLCELAGLTSLSQAPEFVFSDVRQVG 358
Query: 344 PDIRI 348
PD+R+
Sbjct: 359 PDLRL 363
>gi|238755138|ref|ZP_04616485.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia ruckeri
ATCC 29473]
gi|238706698|gb|EEP99068.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia ruckeri
ATCC 29473]
Length = 369
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 222/367 (60%), Gaps = 30/367 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L +SPNP VGCVIV++ +I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTSPNPNVGCVIVRDGKIVGEGYHLRAGEPHAEVHALRMA---GDAA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +GI++V+ A+ DPNP V+G+G+ QL AGI+V+
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALVAAGIRRVVTAMQDPNPQVAGRGLYQLKQAGITVE 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P++++K+A+SLD +T++ + S+WITS ++R D +
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYLQLKMATSLDGRTAMASGESKWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP RI++DS R+ P +
Sbjct: 185 RAQSSAILSTSATVLADDPSLIVRWTELDADTQRIYPELALRQPTRIILDSQNRVTPAHQ 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
V++ G C D D H + ++LP VDL ++++LGKR+IN
Sbjct: 245 VIRQPGDCWLARVD--------ADQQHWPDNVDQLLLPRYGNGVDLVLLLMQLGKRQINS 296
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG QL AL+ G VDEL+LY++P L+G+ A + LP L + + F ++ +
Sbjct: 297 VWVEAGPQLAGALLQAGVVDELILYVAPKLLGDNARGLCGLPGIDRLSQVPEFSFSDVTQ 356
Query: 342 IGPDIRI 348
+GPD+R+
Sbjct: 357 VGPDLRL 363
>gi|423112827|ref|ZP_17100518.1| riboflavin biosynthesis protein RibD [Klebsiella oxytoca 10-5245]
gi|376390321|gb|EHT03007.1| riboflavin biosynthesis protein RibD [Klebsiella oxytoca 10-5245]
Length = 367
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 144/352 (40%), Positives = 215/352 (61%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIV++ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVEDGEIVGEGFHYRAGEPHAEVHALRMA---GEKAQGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L G+ V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCEALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQEGVDVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PW+++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWIQLKMGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + + QP RIVIDS+ R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWDELNAETQALYPQENLRQPLRIVIDSHNRVTPQHRIVQQAGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F T +R+ E + +++P + G++DL ++++LGK++IN + +EAG L AL
Sbjct: 252 LFARTR-EDERQWPESV--RTLLVPEHNGRLDLVLLMMQLGKQQINSIWVEAGPTLAGAL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G +A + LP L + KF+EI+ +GPDI
Sbjct: 309 LQAGLVDELIVYIAPKLLGSDARGLCALPGLEKLAQAPHFKFNEIRHVGPDI 360
>gi|386703631|ref|YP_006167478.1| Riboflavin biosynthesis protein ribD [Escherichia coli P12b]
gi|417611446|ref|ZP_12261920.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_EH250]
gi|419941416|ref|ZP_14458104.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 75]
gi|425113741|ref|ZP_18515579.1| riboflavin biosynthesis protein RibD [Escherichia coli 8.0566]
gi|345365931|gb|EGW98029.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_EH250]
gi|383101799|gb|AFG39308.1| Riboflavin biosynthesis protein ribD [Escherichia coli P12b]
gi|388400852|gb|EIL61544.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 75]
gi|408573132|gb|EKK48991.1| riboflavin biosynthesis protein RibD [Escherichia coli 8.0566]
Length = 361
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|188534657|ref|YP_001908454.1| riboflavin biosynthesis protein RibD [Erwinia tasmaniensis Et1/99]
gi|188029699|emb|CAO97578.1| Riboflavin biosynthesis protein RibD [Erwinia tasmaniensis Et1/99]
Length = 367
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 220/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCV+V++ +I+ GY G HAE+ AL A G
Sbjct: 7 MARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHLRAGEPHAEVHALRMA---GEKS 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +ALI +G+K+V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 RGATVYVTLEPCSHHGRTPPCCDALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +EA +N GF RM+ G PWV++K+ +SLD +T++ + SQWITS E+R D
Sbjct: 124 HGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS------------IKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ GTVL DNP L VR + QP R+++D RI P R
Sbjct: 184 RAQSSAILSTSGTVLADNPALTVRHDELDSASLADYPVNLLRQPIRVIVDGQNRITPQHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G T ++ E++ +++P + ++DL ++++ LGK++IN L +EA
Sbjct: 244 LIAQPGETWLARTS-SCPQQWPENVSQ--LIVPRHQDRLDLVSMLMLLGKKQINSLWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G Q AL+ G VDEL++Y++P L+G+A + LP +L F +I+++GPD+
Sbjct: 301 GAQFAGALLQAGVVDELIVYMAPKLLGDAGRALCQLPGLETLAAAPAFTFSDIRQVGPDL 360
Query: 347 RI 348
R+
Sbjct: 361 RL 362
>gi|442608547|ref|ZP_21023294.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
gi|441749943|emb|CCQ09356.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Pseudoalteromonas luteoviolacea B = ATCC 29581]
Length = 371
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 145/360 (40%), Positives = 218/360 (60%), Gaps = 12/360 (3%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +A++ AK ++PNP VGCV+VK+ +I+ G+ GG HAE+ AL A G
Sbjct: 12 MQMAIELAKQGQFTTTPNPNVGCVLVKDGKIVGQGFHIQAGGPHAEVHALRQA---GDAA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + LI++G+ KVI A+ DPNP VSGKG+A L AGI +
Sbjct: 69 KGATAYVTLEPCSHFGRTPPCAKGLIEAGVAKVIAAMVDPNPKVSGKGLAMLEQAGIEIA 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +AY++N GFF RM+ G+P+V+ K+A+SLD KT+L + S+WITS +R+D +
Sbjct: 129 FGLLESQAYQLNEGFFKRMKVGLPFVQCKLAASLDGKTALASGESKWITSPAARDDVQRF 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS------IKTSHQPYRIVIDSYLRIDPFFRVLKGGG 233
RA+SCAI++G TVL DN +L VR+ + QP R++ DS R+ P +
Sbjct: 189 RAKSCAIISGADTVLTDNAQLTVRAHFYPEQQEQIRQPVRVIFDSQARLTPELALFASES 248
Query: 234 SCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLN 292
I TD P++ ++ E + + GK+D V+ L +R IN++ +EAG L
Sbjct: 249 PVILVRTDSSPVENALVWPHFVEEFIAESKDGKIDCHCVLRFLAQRGINQVWLEAGQTLC 308
Query: 293 TALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G +DE ++Y +P +IGE +F++ YSL + + F +Q IG D+R+ R
Sbjct: 309 GVFHDAGLIDEYIVYYAPKIIGEGGKGLFSIASTYSLSQVETMSFSHVQTIGQDLRVHVR 368
>gi|227327505|ref|ZP_03831529.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Pectobacterium carotovorum subsp. carotovorum
WPP14]
Length = 378
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 146/362 (40%), Positives = 218/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 17 MARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMA---GERA 73
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 74 RGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGIAVS 133
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 134 HGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 193
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR S QP R+V+DS R+ P R
Sbjct: 194 RAESAAILSTSATVLADDPSLTVRWSELGADVQKRYSESDLRQPVRVVVDSQQRVTPQHR 253
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G + G E ++LP + G VDL A+++ LG+R+IN + +EA
Sbjct: 254 IVNQPGETWLARVQADEQ---AWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINSVWVEA 310
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+GE A ++ LP L + + ++++IGPD+
Sbjct: 311 GASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIADVRQIGPDL 370
Query: 347 RI 348
R+
Sbjct: 371 RL 372
>gi|415777166|ref|ZP_11488418.1| riboflavin biosynthesis protein RibD [Escherichia coli 3431]
gi|315616646|gb|EFU97263.1| riboflavin biosynthesis protein RibD [Escherichia coli 3431]
Length = 367
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIDAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|253687420|ref|YP_003016610.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251753998|gb|ACT12074.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 378
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 219/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 17 MARALELARRGRFTTAPNPNVGCVIVRDGDIVGEGYHFRAGEPHAEVHALRMA---GERA 73
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 74 RGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGRGLHRLQQAGIAVS 133
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G M EA ++N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 134 HGFMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 193
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR ++T + QP R+++DS R+ P R
Sbjct: 194 RAESAAILSSSATVLADDPSLTVRWSELGADVQTRYSEADLRQPVRVIVDSQRRVTPQHR 253
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G + G E + LP + G VDL A+++ LG+R+IN + +EA
Sbjct: 254 IVSQPGETWLARVQADEQ---AWPQGVEQVTLPQHNGGVDLVALMMVLGRRQINSVWVEA 310
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+GE A ++ LP L + + E+++IGPD+
Sbjct: 311 GASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIAEVRQIGPDL 370
Query: 347 RI 348
R+
Sbjct: 371 RL 372
>gi|385872836|gb|AFI91356.1| Riboflavin biosynthesis protein RibD [Pectobacterium sp. SCC3193]
Length = 388
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 218/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 27 MARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMA---GERA 83
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L +GI+V
Sbjct: 84 RGATAYVTLEPCSHHGRTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLHRLQQSGITVS 143
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M EA ++N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 144 HGVMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 203
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR ++ QP R+++DS R+ P R
Sbjct: 204 RAESAAILSSSATVLADDPSLTVRWLELDADVQKRYSEADLRQPVRVIVDSQQRVTPQHR 263
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V+ G + G E ++LP + G VDL A+++ LG+R+IN + +EA
Sbjct: 264 VVSQPGETWLARVQADEQ---AWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINSVWVEA 320
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+GE A + LP L + + E+++IGPD+
Sbjct: 321 GASLAGALLNAGVVDELIVYLAPKLLGENARALCLLPGLDQLSQAPEFDIAEVRQIGPDL 380
Query: 347 RI 348
R+
Sbjct: 381 RL 382
>gi|419798932|ref|ZP_14324318.1| riboflavin biosynthesis protein RibD [Neisseria sicca VK64]
gi|385693267|gb|EIG23918.1| riboflavin biosynthesis protein RibD [Neisseria sicca VK64]
Length = 365
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 155/357 (43%), Positives = 217/357 (60%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MQNALALARLGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EALI SG+ +V+ A+ DPNPLV+GKG+A L AGI +
Sbjct: 67 RGATAYVTLEPCSHYGRTPPCAEALIGSGVSRVVAAMTDPNPLVAGKGLAMLEVAGIRTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA E+N GF SR++RG P+VR+K A+SLD KT+L + S WIT + +R D
Sbjct: 127 SGLLETEARELNRGFLSRIERGRPFVRVKCAASLDGKTALADGRSYWITGEAARADVQTL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS--CIF 237
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS L+ ++ S I
Sbjct: 187 RAESCAVLTGIGTVLVDNPRLNVRAFPTLRQPARIVLDSKLQTPLNSHMVSDDLSPTIIV 246
Query: 238 TATDLPMKRKILEDLGHEVIVLP--NNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
TA D K H I+ N G++DL A++ L + E+ +EAG L +A
Sbjct: 247 TAVDDEECLKPYRAFNHIRILRSSENADGRIDLAALLPRLAELGYGEIMVEAGATLTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDIRILAR 351
I G DE++LY +P ++GE ++ TL + + L + + + ++ IG D++ + R
Sbjct: 307 IEAGLADEIVLYQAPKILGEGRSLLTLSANPAVLASEGEWESRSVELIGQDVKWVLR 363
>gi|16128399|ref|NP_414948.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli str. K-12 substr. MG1655]
gi|170080000|ref|YP_001729320.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli str. K-12 substr. DH10B]
gi|238899702|ref|YP_002925498.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli BW2952]
gi|300947935|ref|ZP_07162083.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 116-1]
gi|300957979|ref|ZP_07170144.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 175-1]
gi|301025699|ref|ZP_07189215.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 196-1]
gi|301647336|ref|ZP_07247148.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 146-1]
gi|331640931|ref|ZP_08342066.1| riboflavin biosynthesis protein RibD [Escherichia coli H736]
gi|386279440|ref|ZP_10057121.1| riboflavin biosynthesis protein RibD [Escherichia sp. 4_1_40B]
gi|386596710|ref|YP_006093110.1| riboflavin biosynthesis protein RibD [Escherichia coli DH1]
gi|387610940|ref|YP_006114056.1| riboflavin biosynthesis protein [Escherichia coli ETEC H10407]
gi|387620173|ref|YP_006127800.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
/ 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli DH1]
gi|388476520|ref|YP_488706.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli str. K-12 substr. W3110]
gi|404373736|ref|ZP_10978971.1| riboflavin biosynthesis protein RibD [Escherichia sp. 1_1_43]
gi|417260818|ref|ZP_12048316.1| riboflavin biosynthesis protein RibD [Escherichia coli 2.3916]
gi|417270506|ref|ZP_12057859.1| riboflavin biosynthesis protein RibD [Escherichia coli 2.4168]
gi|417275300|ref|ZP_12062637.1| riboflavin biosynthesis protein RibD [Escherichia coli 3.2303]
gi|417292923|ref|ZP_12080203.1| riboflavin biosynthesis protein RibD [Escherichia coli B41]
gi|417632898|ref|ZP_12283119.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_S1191]
gi|417945768|ref|ZP_12588997.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli XH140A]
gi|417976614|ref|ZP_12617406.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli XH001]
gi|418301264|ref|ZP_12913058.1| riboflavin biosynthesis protein RibD [Escherichia coli UMNF18]
gi|418959293|ref|ZP_13511192.1| riboflavin biosynthesis protein RibD [Escherichia coli J53]
gi|419140944|ref|ZP_13685701.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC6A]
gi|419146592|ref|ZP_13691288.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC6B]
gi|419152245|ref|ZP_13696833.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC6C]
gi|419173843|ref|ZP_13717699.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC7B]
gi|419811843|ref|ZP_14336715.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O32:H37 str. P4]
gi|421776019|ref|ZP_16212625.1| riboflavin biosynthesis protein RibD [Escherichia coli AD30]
gi|422764944|ref|ZP_16818671.1| riboflavin biosynthesis protein RibD [Escherichia coli E1520]
gi|422769642|ref|ZP_16823333.1| riboflavin biosynthesis protein RibD [Escherichia coli E482]
gi|422816428|ref|ZP_16864643.1| riboflavin biosynthesis protein RibD [Escherichia coli M919]
gi|423701195|ref|ZP_17675654.1| riboflavin biosynthesis protein RibD [Escherichia coli H730]
gi|425118507|ref|ZP_18520242.1| riboflavin biosynthesis protein RibD [Escherichia coli 8.0569]
gi|425271109|ref|ZP_18662623.1| riboflavin biosynthesis protein RibD [Escherichia coli TW15901]
gi|425281781|ref|ZP_18672902.1| riboflavin biosynthesis protein RibD [Escherichia coli TW00353]
gi|432415366|ref|ZP_19657997.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE44]
gi|432562324|ref|ZP_19798951.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE51]
gi|432579091|ref|ZP_19815525.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE56]
gi|432625998|ref|ZP_19861983.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE77]
gi|432635728|ref|ZP_19871614.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE81]
gi|432659656|ref|ZP_19895317.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE111]
gi|432684247|ref|ZP_19919566.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE156]
gi|432690304|ref|ZP_19925550.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE161]
gi|432702986|ref|ZP_19938112.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE171]
gi|432735940|ref|ZP_19970716.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE42]
gi|432953547|ref|ZP_20145846.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE197]
gi|433046485|ref|ZP_20233917.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE120]
gi|442590092|ref|ZP_21008876.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
coli O10:K5(L):H4 str. ATCC 23506]
gi|450239517|ref|ZP_21899055.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli S17]
gi|140252|sp|P25539.1|RIBD_ECOLI RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|581147|emb|CAA45735.1| unnamed protein product [Escherichia coli K-12]
gi|1773098|gb|AAB40170.1| riboflavin biosynthesis protein RibG [Escherichia coli]
gi|1786616|gb|AAC73517.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli str. K-12 substr. MG1655]
gi|73853031|emb|CAJ28593.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Escherichia coli]
gi|85674554|dbj|BAE76194.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli str. K12 substr. W3110]
gi|169887835|gb|ACB01542.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli str. K-12 substr. DH10B]
gi|238861183|gb|ACR63181.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli BW2952]
gi|260450399|gb|ACX40821.1| riboflavin biosynthesis protein RibD [Escherichia coli DH1]
gi|299880011|gb|EFI88222.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 196-1]
gi|300315315|gb|EFJ65099.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 175-1]
gi|300452535|gb|EFK16155.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 116-1]
gi|301074481|gb|EFK89287.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 146-1]
gi|309700676|emb|CBI99972.1| riboflavin biosynthesis protein [Escherichia coli ETEC H10407]
gi|315135096|dbj|BAJ42255.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
/ 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli DH1]
gi|323938599|gb|EGB34848.1| riboflavin biosynthesis protein RibD [Escherichia coli E1520]
gi|323943220|gb|EGB39376.1| riboflavin biosynthesis protein RibD [Escherichia coli E482]
gi|331037729|gb|EGI09949.1| riboflavin biosynthesis protein RibD [Escherichia coli H736]
gi|339413362|gb|AEJ55034.1| riboflavin biosynthesis protein RibD [Escherichia coli UMNF18]
gi|342362500|gb|EGU26618.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli XH140A]
gi|344193781|gb|EGV47859.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli XH001]
gi|345391208|gb|EGX21002.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_S1191]
gi|359331174|dbj|BAL37621.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli str. K-12 substr. MDS42]
gi|378000277|gb|EHV63351.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC6A]
gi|378001520|gb|EHV64579.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC6B]
gi|378003829|gb|EHV66869.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC6C]
gi|378037796|gb|EHW00319.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC7B]
gi|384377995|gb|EIE35887.1| riboflavin biosynthesis protein RibD [Escherichia coli J53]
gi|385155326|gb|EIF17330.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O32:H37 str. P4]
gi|385539901|gb|EIF86728.1| riboflavin biosynthesis protein RibD [Escherichia coli M919]
gi|385712885|gb|EIG49824.1| riboflavin biosynthesis protein RibD [Escherichia coli H730]
gi|386123439|gb|EIG72035.1| riboflavin biosynthesis protein RibD [Escherichia sp. 4_1_40B]
gi|386225976|gb|EII48301.1| riboflavin biosynthesis protein RibD [Escherichia coli 2.3916]
gi|386236849|gb|EII68821.1| riboflavin biosynthesis protein RibD [Escherichia coli 2.4168]
gi|386241953|gb|EII78866.1| riboflavin biosynthesis protein RibD [Escherichia coli 3.2303]
gi|386252495|gb|EIJ02186.1| riboflavin biosynthesis protein RibD [Escherichia coli B41]
gi|404292775|gb|EJZ49566.1| riboflavin biosynthesis protein RibD [Escherichia sp. 1_1_43]
gi|408198885|gb|EKI24096.1| riboflavin biosynthesis protein RibD [Escherichia coli TW15901]
gi|408206201|gb|EKI31013.1| riboflavin biosynthesis protein RibD [Escherichia coli TW00353]
gi|408458758|gb|EKJ82543.1| riboflavin biosynthesis protein RibD [Escherichia coli AD30]
gi|408573645|gb|EKK49475.1| riboflavin biosynthesis protein RibD [Escherichia coli 8.0569]
gi|430943742|gb|ELC63848.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE44]
gi|431099557|gb|ELE04577.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE51]
gi|431108793|gb|ELE12764.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE56]
gi|431165133|gb|ELE65491.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE77]
gi|431174010|gb|ELE74071.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE81]
gi|431203773|gb|ELF02363.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE111]
gi|431225218|gb|ELF22423.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE156]
gi|431230792|gb|ELF26562.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE161]
gi|431247117|gb|ELF41359.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE171]
gi|431286828|gb|ELF77648.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE42]
gi|431470677|gb|ELH50574.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE197]
gi|431572874|gb|ELI45698.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE120]
gi|441609750|emb|CCP94789.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
coli O10:K5(L):H4 str. ATCC 23506]
gi|449325079|gb|EMD14996.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli S17]
Length = 367
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|403057497|ref|YP_006645714.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402804823|gb|AFR02461.1| riboflavin biosynthesis protein RibD [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 378
Score = 275 bits (702), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 218/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 17 MARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMA---GERA 73
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 74 RGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGIAVS 133
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 134 HGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 193
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR S QP R+++DS R+ P R
Sbjct: 194 RAESAAILSSSATVLADDPSLTVRWSELGADVQKRYSEADLRQPVRVIVDSQQRVTPQHR 253
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G + G E ++LP + G VDL A+++ LG+R+IN + +EA
Sbjct: 254 IISQPGETWLARVQADEQ---AWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINSVWVEA 310
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+GE A ++ LP L + + +++++GPD+
Sbjct: 311 GASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIADVRQVGPDL 370
Query: 347 RI 348
R+
Sbjct: 371 RL 372
>gi|385851911|ref|YP_005898426.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M04-240196]
gi|325206734|gb|ADZ02187.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M04-240196]
Length = 369
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 144/327 (44%), Positives = 207/327 (63%), Gaps = 8/327 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALRQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNP V+GKG A L +AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPPVAGKGFAMLEAAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNLG--KVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ K+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHVRILMPSETADSKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTL 322
+ E DE++LY SP ++G ++F+L
Sbjct: 307 LAENLADEIVLYRSPKILGSGKDLFSL 333
>gi|261822528|ref|YP_003260634.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Pectobacterium wasabiae WPP163]
gi|261606541|gb|ACX89027.1| riboflavin biosynthesis protein RibD [Pectobacterium wasabiae
WPP163]
Length = 369
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 218/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 8 MARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMA---GERA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L +GI+V
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLHRLQQSGITVS 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M EA ++N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGVMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR ++ QP R+++DS R+ P R
Sbjct: 185 RAESAAILSSSATVLADDPSLTVRWLELDADVQKRYSEADLRQPVRVIVDSQQRVTPQHR 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V+ G + G E ++LP + G VDL A+++ LG+R+IN + +EA
Sbjct: 245 VVSQPGETWLARVQADEQ---AWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINSVWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+GE A + LP L + + E+++IGPD+
Sbjct: 302 GASLAGALLNAGVVDELIVYLAPKLLGENARALCLLPGLDQLSQAPEFDIVEVRQIGPDL 361
Query: 347 RI 348
R+
Sbjct: 362 RL 363
>gi|227113442|ref|ZP_03827098.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Pectobacterium carotovorum subsp.
brasiliensis PBR1692]
Length = 378
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 218/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 17 MARALELARRGCFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMA---GERA 73
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 74 RGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGIAVS 133
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 134 HGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 193
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR S QP R+++DS R+ P R
Sbjct: 194 RAESAAILSSSATVLADDPSLTVRWSELGADIQKRYSEADLRQPVRVIVDSQQRVTPQHR 253
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G + G E ++LP + G VDL A+++ LG+R+IN + +EA
Sbjct: 254 IVSQPGETWLARVQADEQ---AWPQGVEQVMLPQHNGGVDLVALMMVLGRRQINSVWVEA 310
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+GE A ++ LP L + + +++++GPD+
Sbjct: 311 GASLAGALLNAGVVDELIVYLAPKLLGENARSLCLLPGLDQLSQAPEFDIADVRQVGPDL 370
Query: 347 RI 348
R+
Sbjct: 371 RL 372
>gi|372271364|ref|ZP_09507412.1| riboflavin biosynthesis protein RibD [Marinobacterium stanieri S30]
Length = 381
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 219/364 (60%), Gaps = 20/364 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + ++PNPRVGCVIVK+ +I G G HAE+ AL A G
Sbjct: 13 MARALQLAEQGLYTTNPNPRVGCVIVKDGELIGEGAHLKAGEPHAEVHALRMA---GEQA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNPLV+G+G+A+L GI
Sbjct: 70 RGGAAYVTLEPCSHHGKTPPCAEALVKAGVGRVVAAMQDPNPLVAGRGLARLQDVGIDTA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N GF SRM+RG P+VR+K+ASSLD +T++ + SQWIT +R+D
Sbjct: 130 HGLLESQARALNPGFISRMERGRPYVRLKLASSLDGRTAMQSGESQWITGAAARSDVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK-----------TSHQPYRIVIDSYLRIDPFFRV 228
RARS A+LTG+ TVL DN L VR+ + QP R+V+DS LR+ +
Sbjct: 190 RARSSAVLTGVDTVLMDNASLTVRAAQLGLPDAEAERAAERQPLRVVLDSQLRLPASTAM 249
Query: 229 LKGGGSCIFTATDLPMKRK--ILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHI 285
L GS + L + L G +V+ LP G+VDL A++ L + + NEL I
Sbjct: 250 LSLPGSTLVATAQLDNQPSAIALSASGAQVLSLPGADGRVDLSALLSWLAQHAQCNELLI 309
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
E G L +++ EG VDEL+LY++P L+G A +F LP + ++ +L+ + +++G
Sbjct: 310 ECGATLAGSVLSEGLVDELVLYMAPTLLGSSARPLFELPLD-EMAQQYRLQLTDRRQLGD 368
Query: 345 DIRI 348
D+R+
Sbjct: 369 DLRL 372
>gi|153947163|ref|YP_001402077.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pseudotuberculosis IP 31758]
gi|152958658|gb|ABS46119.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis
IP 31758]
Length = 369
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 221/365 (60%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L +SPNP VGCV+V++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 65 RGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAVD 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTS----------HQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR + T QP +I++DS+ R+ P +
Sbjct: 185 RAESSAILSTSATVLADDPSLTVRWQDLDTETQVLYPHNSIRQPVKIILDSHNRVTPRHK 244
Query: 228 VLKGGGSCIFT---ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
V++ G C A D P I E ++LP VDL ++++LGKR IN +
Sbjct: 245 VIQQDGPCWLARVDADDQPWPGNI------EQLLLPRYGNGVDLVVLMMQLGKRNINSVW 298
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG QL AL+ G VDEL+LYI+P L+G +A + L +L + + F +++ +G
Sbjct: 299 VEAGPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVG 358
Query: 344 PDIRI 348
PD+R+
Sbjct: 359 PDLRL 363
>gi|22124907|ref|NP_668330.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis KIM10+]
gi|45440597|ref|NP_992136.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis biovar Microtus str. 91001]
gi|51595284|ref|YP_069475.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pseudotuberculosis IP 32953]
gi|108808668|ref|YP_652584.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis Antiqua]
gi|108811070|ref|YP_646837.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis Nepal516]
gi|145600077|ref|YP_001164153.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis Pestoides F]
gi|149364971|ref|ZP_01887006.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis CA88-4125]
gi|162418167|ref|YP_001607523.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis Angola]
gi|165926574|ref|ZP_02222406.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165935961|ref|ZP_02224531.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011096|ref|ZP_02231994.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166213091|ref|ZP_02239126.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167398606|ref|ZP_02304130.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167421644|ref|ZP_02313397.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167423702|ref|ZP_02315455.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167470057|ref|ZP_02334761.1| riboflavin biosynthesis protein RibD [Yersinia pestis FV-1]
gi|170025475|ref|YP_001721980.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pseudotuberculosis YPIII]
gi|186894301|ref|YP_001871413.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pseudotuberculosis PB1/+]
gi|218930213|ref|YP_002348088.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis CO92]
gi|229838788|ref|ZP_04458947.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229896058|ref|ZP_04511228.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis Pestoides A]
gi|229899356|ref|ZP_04514499.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis biovar Orientalis str. India
195]
gi|229901297|ref|ZP_04516419.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis Nepal516]
gi|270489486|ref|ZP_06206560.1| riboflavin biosynthesis protein RibD [Yersinia pestis KIM D27]
gi|294504911|ref|YP_003568973.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase oxidoreductase [Yersinia pestis Z176003]
gi|384123381|ref|YP_005506001.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase oxidoreductase [Yersinia pestis D106004]
gi|384127233|ref|YP_005509847.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase oxidoreductase [Yersinia pestis D182038]
gi|384138974|ref|YP_005521676.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis A1122]
gi|420564585|ref|ZP_15060554.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-04]
gi|420569636|ref|ZP_15065139.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-05]
gi|420575290|ref|ZP_15070257.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-06]
gi|420580606|ref|ZP_15075089.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-07]
gi|420585960|ref|ZP_15079939.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-08]
gi|420591072|ref|ZP_15084536.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-09]
gi|420596456|ref|ZP_15089379.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-10]
gi|420602130|ref|ZP_15094427.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-11]
gi|420607554|ref|ZP_15099329.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-12]
gi|420612938|ref|ZP_15104160.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-13]
gi|420618323|ref|ZP_15108855.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-14]
gi|420623622|ref|ZP_15113628.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-15]
gi|420628695|ref|ZP_15118230.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-16]
gi|420633831|ref|ZP_15122831.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-19]
gi|420639027|ref|ZP_15127514.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-25]
gi|420644499|ref|ZP_15132502.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-29]
gi|420655424|ref|ZP_15142349.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-34]
gi|420660931|ref|ZP_15147279.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-36]
gi|420666218|ref|ZP_15152035.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-42]
gi|420671085|ref|ZP_15156471.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-45]
gi|420676432|ref|ZP_15161331.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-46]
gi|420682053|ref|ZP_15166410.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-47]
gi|420687388|ref|ZP_15171149.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-48]
gi|420698367|ref|ZP_15180801.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-53]
gi|420704194|ref|ZP_15185437.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-54]
gi|420709562|ref|ZP_15190197.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-55]
gi|420715020|ref|ZP_15195050.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-56]
gi|420720533|ref|ZP_15199779.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-58]
gi|420726007|ref|ZP_15204594.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-59]
gi|420731589|ref|ZP_15209611.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-60]
gi|420736611|ref|ZP_15214147.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-61]
gi|420742086|ref|ZP_15219067.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-63]
gi|420747806|ref|ZP_15223904.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-64]
gi|420753242|ref|ZP_15228756.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-65]
gi|420759025|ref|ZP_15233414.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-66]
gi|420764295|ref|ZP_15238036.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-71]
gi|420769520|ref|ZP_15242724.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-72]
gi|420774500|ref|ZP_15247234.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-76]
gi|420780117|ref|ZP_15252177.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-88]
gi|420785716|ref|ZP_15257071.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-89]
gi|420790859|ref|ZP_15261691.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-90]
gi|420796382|ref|ZP_15266656.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-91]
gi|420806795|ref|ZP_15276051.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-93]
gi|420817666|ref|ZP_15285844.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-95]
gi|420822981|ref|ZP_15290612.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-96]
gi|420828062|ref|ZP_15295179.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-98]
gi|420833749|ref|ZP_15300318.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-99]
gi|420838616|ref|ZP_15304714.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-100]
gi|420843807|ref|ZP_15309425.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-101]
gi|420849464|ref|ZP_15314507.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-102]
gi|420855134|ref|ZP_15319309.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-103]
gi|420860324|ref|ZP_15323879.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-113]
gi|421764686|ref|ZP_16201474.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis INS]
gi|21957743|gb|AAM84581.1|AE013703_11 bifunctional pyrimidine deaminase/reductase [Yersinia pestis
KIM10+]
gi|45435454|gb|AAS61013.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Yersinia pestis biovar Microtus str. 91001]
gi|51588566|emb|CAH20174.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Yersinia pseudotuberculosis IP
32953]
gi|108774718|gb|ABG17237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Yersinia pestis Nepal516]
gi|108780581|gb|ABG14639.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Yersinia pestis Antiqua]
gi|115348824|emb|CAL21778.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Yersinia pestis CO92]
gi|145211773|gb|ABP41180.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Yersinia pestis Pestoides F]
gi|149291384|gb|EDM41458.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis CA88-4125]
gi|162350982|gb|ABX84930.1| riboflavin biosynthesis protein RibD [Yersinia pestis Angola]
gi|165916106|gb|EDR34713.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Orientalis str. IP275]
gi|165921502|gb|EDR38699.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990096|gb|EDR42397.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205878|gb|EDR50358.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960563|gb|EDR56584.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167051110|gb|EDR62518.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167057872|gb|EDR67618.1| riboflavin biosynthesis protein RibD [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169752009|gb|ACA69527.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis
YPIII]
gi|186697327|gb|ACC87956.1| riboflavin biosynthesis protein RibD [Yersinia pseudotuberculosis
PB1/+]
gi|229681226|gb|EEO77320.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis Nepal516]
gi|229687758|gb|EEO79831.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis biovar Orientalis str. India
195]
gi|229695154|gb|EEO85201.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis biovar Orientalis str. PEXU2]
gi|229700981|gb|EEO89010.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Yersinia pestis Pestoides A]
gi|262362977|gb|ACY59698.1| riboflavin biosynthesis protein RibD (includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Yersinia pestis D106004]
gi|262366897|gb|ACY63454.1| riboflavin biosynthesis protein RibD (includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Yersinia pestis D182038]
gi|270337990|gb|EFA48767.1| riboflavin biosynthesis protein RibD [Yersinia pestis KIM D27]
gi|294355370|gb|ADE65711.1| riboflavin biosynthesis protein RibD (includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase)
[Yersinia pestis Z176003]
gi|342854103|gb|AEL72656.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis A1122]
gi|391438360|gb|EIQ99115.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-04]
gi|391439489|gb|EIR00139.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-05]
gi|391443287|gb|EIR03615.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-06]
gi|391455296|gb|EIR14425.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-07]
gi|391456163|gb|EIR15215.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-08]
gi|391458084|gb|EIR16973.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-09]
gi|391471088|gb|EIR28679.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-10]
gi|391472496|gb|EIR29952.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-11]
gi|391473456|gb|EIR30834.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-12]
gi|391487239|gb|EIR43196.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-13]
gi|391488714|gb|EIR44529.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-15]
gi|391489061|gb|EIR44843.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-14]
gi|391503123|gb|EIR57343.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-16]
gi|391503345|gb|EIR57549.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-19]
gi|391508558|gb|EIR62281.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-25]
gi|391519125|gb|EIR71782.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-29]
gi|391520792|gb|EIR73316.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-34]
gi|391533687|gb|EIR84941.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-36]
gi|391536685|gb|EIR87646.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-42]
gi|391539098|gb|EIR89844.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-45]
gi|391552078|gb|EIS01532.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-46]
gi|391552358|gb|EIS01789.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-47]
gi|391552801|gb|EIS02192.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-48]
gi|391568125|gb|EIS15893.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-53]
gi|391572798|gb|EIS19978.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-54]
gi|391581399|gb|EIS27289.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-55]
gi|391583628|gb|EIS29266.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-56]
gi|391594079|gb|EIS38282.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-58]
gi|391597041|gb|EIS40899.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-60]
gi|391598238|gb|EIS41982.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-59]
gi|391611494|gb|EIS53665.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-61]
gi|391612033|gb|EIS54149.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-63]
gi|391614974|gb|EIS56789.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-64]
gi|391624624|gb|EIS65234.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-65]
gi|391629344|gb|EIS69290.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-66]
gi|391635350|gb|EIS74523.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-71]
gi|391637381|gb|EIS76308.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-72]
gi|391647340|gb|EIS84977.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-76]
gi|391650939|gb|EIS88172.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-88]
gi|391655462|gb|EIS92203.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-89]
gi|391660249|gb|EIS96428.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-90]
gi|391667840|gb|EIT03125.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-91]
gi|391677328|gb|EIT11641.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-93]
gi|391691276|gb|EIT24216.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-95]
gi|391694241|gb|EIT26920.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-96]
gi|391695928|gb|EIT28462.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-98]
gi|391708077|gb|EIT39363.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-99]
gi|391711525|gb|EIT42482.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-100]
gi|391712396|gb|EIT43281.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-101]
gi|391724239|gb|EIT53835.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-102]
gi|391724981|gb|EIT54494.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-103]
gi|391727589|gb|EIT56783.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-113]
gi|411174237|gb|EKS44270.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia pestis INS]
Length = 369
Score = 274 bits (701), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 220/365 (60%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L +SPNP VGCV+V++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 65 RGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAVD 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR + QP +I++DS+ R+ P +
Sbjct: 185 RAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVTPRHK 244
Query: 228 VLKGGGSCIFT---ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
V++ G C A D P I E ++LP VDL ++++LGKR IN +
Sbjct: 245 VIQQDGPCWLARVDADDQPWPGNI------EQLLLPRYGNGVDLVVLMMQLGKRNINSVW 298
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG QL AL+ G VDEL+LYI+P L+G +A + L +L + + F +++ +G
Sbjct: 299 VEAGPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVG 358
Query: 344 PDIRI 348
PD+R+
Sbjct: 359 PDLRL 363
>gi|419157753|ref|ZP_13702279.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC6D]
gi|419162686|ref|ZP_13707166.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC6E]
gi|378014227|gb|EHV77133.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC6D]
gi|378017152|gb|EHV80027.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC6E]
Length = 367
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKS 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|385339438|ref|YP_005893310.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis G2136]
gi|325197682|gb|ADY93138.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis G2136]
Length = 369
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 145/328 (44%), Positives = 209/328 (63%), Gaps = 8/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L SAGI +
Sbjct: 67 KGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLESAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF S ++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLENKARELNRGFLSSIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNP+LNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPQLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHIRILMPSETAGGKIDLNHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP 323
+ E DE++LY SP ++G ++ +LP
Sbjct: 307 LAEDLADEIVLYRSPKILGSGKDLLSLP 334
>gi|422782797|ref|ZP_16835582.1| riboflavin biosynthesis protein RibD [Escherichia coli TW10509]
gi|323976105|gb|EGB71198.1| riboflavin biosynthesis protein RibD [Escherichia coli TW10509]
Length = 367
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TV+ D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVMADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQSGETWFARTQED-SREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|261381200|ref|ZP_05985773.1| riboflavin biosynthesis protein RibD [Neisseria subflava NJ9703]
gi|284795821|gb|EFC51168.1| riboflavin biosynthesis protein RibD [Neisseria subflava NJ9703]
Length = 372
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 153/357 (42%), Positives = 222/357 (62%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AKL ++SPNPRVGCVI +I+ G+ G HAE+ AL A A
Sbjct: 10 MQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQAGAA---A 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EAL+ SG+ +V+ A+ DPNPLVSGKG++ L +AGI +
Sbjct: 67 KGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVSGKGLSMLEAAGIRTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++RG P+VR+K A+SLD KT+L + S WIT + +R D I
Sbjct: 127 SGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAAREDVQIL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI--DPFFRVLKGGGSCIF 237
RA SCA+LTGIGTVL DNP+LNVRS T QP RIV+DS L+I D + I
Sbjct: 187 RAESCAVLTGIGTVLADNPKLNVRSFPTLRQPARIVLDSRLQIPLDCHLVTDTDSPTVIV 246
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + + + L H I+ P+ G+++L +++ +L + E+ +EAG L +A
Sbjct: 247 TLSSDEQRLQALGKFEHIRIIRPSEHINGRINLLSLMPQLAELGFGEVLVEAGSTLTSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPH-YSLDKKIKLKFHEIQKIGPDIRILAR 351
+ + VDE++LY +P L+G +F+LP + +L + ++ IG DI+ + R
Sbjct: 307 LKDDLVDEIVLYQAPKLLGAGKPLFSLPENPAALLSDGPWQSQSVEIIGQDIKWVLR 363
>gi|167570902|ref|ZP_02363776.1| riboflavin biosynthesis protein RibD [Burkholderia oklahomensis
C6786]
Length = 246
Score = 274 bits (700), Expect = 5e-71, Method: Compositional matrix adjust.
Identities = 125/225 (55%), Positives = 167/225 (74%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ ++PNPRVGCVIV+ +I G+T+ G +HAE+ AL +A A+G D+ ++TVY+T
Sbjct: 18 ARGMYTTTPNPRVGCVIVQNDVVIGEGFTQPAGQDHAEVQALKDARARGGDLRDATVYVT 77
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+FG TPPC ALI + + KV+ A+ DPNP VSG+G+A L AGI V+ GL+ EA
Sbjct: 78 LEPCSHFGRTPPCAHALIDARVGKVVAAMEDPNPQVSGRGLAMLRDAGIDVRCGLLTHEA 137
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+E+NIGF SRM RG PWVRMK A+SLD +T+L + S+WIT +R+D H WRAR+CAIL
Sbjct: 138 HEMNIGFVSRMTRGRPWVRMKTAASLDGRTALASGESKWITGDAARDDGHKWRARACAIL 197
Query: 188 TGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGG 232
TGIGTV +D+P+LNVR + T QP R++IDS L I R+L+GG
Sbjct: 198 TGIGTVREDDPQLNVRGVDTPRQPRRVLIDSRLDIPLSARLLEGG 242
>gi|238765182|ref|ZP_04626114.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
kristensenii ATCC 33638]
gi|238696616|gb|EEP89401.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
kristensenii ATCC 33638]
Length = 369
Score = 273 bits (699), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 220/365 (60%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L +SPNP VGCV+V++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTSPNPNVGCVVVRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+K+V+ A+ DPNP V+G+G+ +L AG+ V
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEVD 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P++++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR T QP R+++DS+ R+ P +
Sbjct: 185 RAQSSAILSTSATVLADDPSLTVRWQELDADTQARYPQDTLRQPVRVIVDSHNRVTPEHK 244
Query: 228 VLKGGGSCIFT---ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
V++ G C A + + E ++LP + VDL ++++LGKR+IN +
Sbjct: 245 VIQQDGPCWLARVEADEQSWPNNV------EQLLLPRHGNGVDLVLLMMQLGKRQINSVW 298
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG Q AL+ G VDEL+LYI+P L+G +A + L SL + F +++++G
Sbjct: 299 VEAGPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTSLSDAPEFVFSDVRQLG 358
Query: 344 PDIRI 348
PD+R+
Sbjct: 359 PDLRL 363
>gi|88811147|ref|ZP_01126403.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231]
gi|88791686|gb|EAR22797.1| riboflavin biosynthesis protein RibD [Nitrococcus mobilis Nb-231]
Length = 376
Score = 273 bits (698), Expect = 8e-71, Method: Compositional matrix adjust.
Identities = 152/363 (41%), Positives = 231/363 (63%), Gaps = 18/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AK + S+ PNPRVGCVIV+ +++ G+ + G HAEI+AL A
Sbjct: 18 MAHALRLAKRGLFSTGPNPRVGCVIVRNGQLVGEGWHRRAGEPHAEINALAAAGQA---A 74
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +Y+TLEPC + G TPPCT AL+ +GI +VI A DPNP V+G+G+ QL +AGI+ +
Sbjct: 75 RGAILYVTLEPCCHHGRTPPCTTALLSAGITRVIAACKDPNPRVAGQGLEQLTAAGITTR 134
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM ++A +N GFF RM+ G+P+VR K+A SLD +T++ + S+WIT+ +R D H
Sbjct: 135 HGLMAEQAQTLNPGFFKRMRTGLPYVRCKLAMSLDGRTAMASGESRWITAAAARGDVHRL 194
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH---QPYRIVIDSYLRIDPFFRVLKGGG--S 234
RARS +LTG GTVL D+P+L R + TS QP R+V+DS LRI R+L+ G +
Sbjct: 195 RARSDGLLTGHGTVLADDPQLTARDVDTSWDLVQPCRLVLDSRLRIPKQARMLQEPGKVA 254
Query: 235 CIFTATDLPMKRKILEDL---GHEVI-VLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
++ D R+ +DL G E+ + P++ G+V+L+ + +G +INEL +EAG
Sbjct: 255 VLYAHHD----RRRAQDLTAAGAELWPIEPDSDGRVELRQALTAIGNAEINELLVEAGPT 310
Query: 291 LNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L+ AL+ +DEL++YI+P L+G EA + LP + ++I + +++ +GPD+R+
Sbjct: 311 LSGALLQADLIDELVVYIAPHLMGDEARPLLRLPGLVRMAERIPITITDMRALGPDLRLT 370
Query: 350 ARF 352
AR
Sbjct: 371 ARL 373
>gi|297517703|ref|ZP_06936089.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli OP50]
Length = 361
Score = 273 bits (698), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPAHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + +LP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|386309522|ref|YP_006005578.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia enterocolitica subsp. palearctica
Y11]
gi|418243764|ref|ZP_12870219.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|433550599|ref|ZP_20506643.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Yersinia
enterocolitica IP 10393]
gi|318604604|emb|CBY26102.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Yersinia enterocolitica subsp. palearctica Y11]
gi|351776734|gb|EHB19030.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia enterocolitica subsp. palearctica
PhRBD_Ye1]
gi|431789734|emb|CCO69683.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Yersinia
enterocolitica IP 10393]
Length = 369
Score = 273 bits (698), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/364 (40%), Positives = 219/364 (60%), Gaps = 24/364 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L +SPNP VGCV+V++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+K+V+ A+ DPNP V+G+G+ +L AG+ V
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEVD 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P++++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP RI++DS+ R+ P +
Sbjct: 185 RAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQHK 244
Query: 228 VLKGGGSCIFT--ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
V++ G C TD +E L +LP + VDL ++++LGKR+IN + +
Sbjct: 245 VIQQDGPCWLARVETDEQSWPNNVEQL-----LLPRHGNGVDLVLLMMQLGKRQINSVWV 299
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG Q AL+ G VDEL+LYI+P L+G +A + L L + F E++++GP
Sbjct: 300 EAGPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTQLSDAPEFVFSEVRQVGP 359
Query: 345 DIRI 348
D+R+
Sbjct: 360 DLRL 363
>gi|170021214|ref|YP_001726168.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli ATCC 8739]
gi|188492525|ref|ZP_02999795.1| riboflavin biosynthesis protein RibD [Escherichia coli 53638]
gi|194438906|ref|ZP_03070991.1| riboflavin biosynthesis protein RibD [Escherichia coli 101-1]
gi|251783919|ref|YP_002998223.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Escherichia coli BL21(DE3)]
gi|253774601|ref|YP_003037432.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 'BL21-Gold(DE3)pLysS AG']
gi|254160480|ref|YP_003043588.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli B str. REL606]
gi|254287284|ref|YP_003053032.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Escherichia coli BL21(DE3)]
gi|300930291|ref|ZP_07145704.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 187-1]
gi|312970509|ref|ZP_07784690.1| riboflavin biosynthesis protein RibD [Escherichia coli 1827-70]
gi|422785020|ref|ZP_16837759.1| riboflavin biosynthesis protein RibD [Escherichia coli H489]
gi|422791218|ref|ZP_16843921.1| riboflavin biosynthesis protein RibD [Escherichia coli TA007]
gi|432879906|ref|ZP_20096726.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE154]
gi|442596474|ref|ZP_21014285.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
coli O5:K4(L):H4 str. ATCC 23502]
gi|169756142|gb|ACA78841.1| riboflavin biosynthesis protein RibD [Escherichia coli ATCC 8739]
gi|188487724|gb|EDU62827.1| riboflavin biosynthesis protein RibD [Escherichia coli 53638]
gi|194422200|gb|EDX38202.1| riboflavin biosynthesis protein RibD [Escherichia coli 101-1]
gi|242376192|emb|CAQ30883.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Escherichia coli BL21(DE3)]
gi|253325645|gb|ACT30247.1| riboflavin biosynthesis protein RibD [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|253972381|gb|ACT38052.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli B str. REL606]
gi|253976591|gb|ACT42261.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli BL21(DE3)]
gi|300461863|gb|EFK25356.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 187-1]
gi|310337158|gb|EFQ02296.1| riboflavin biosynthesis protein RibD [Escherichia coli 1827-70]
gi|323963400|gb|EGB58962.1| riboflavin biosynthesis protein RibD [Escherichia coli H489]
gi|323972264|gb|EGB67474.1| riboflavin biosynthesis protein RibD [Escherichia coli TA007]
gi|431413530|gb|ELG96295.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE154]
gi|441655135|emb|CCQ00198.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
coli O5:K4(L):H4 str. ATCC 23502]
Length = 367
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPAHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + +LP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|332160725|ref|YP_004297302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
gi|325664955|gb|ADZ41599.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia enterocolitica subsp. palearctica
105.5R(r)]
Length = 369
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 146/364 (40%), Positives = 219/364 (60%), Gaps = 24/364 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L +SPNP VGCV+V++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+K+V+ A+ DPNP V+G+G+ +L AG+ V
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEVD 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P++++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP RI++DS+ R+ P +
Sbjct: 185 RAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQHK 244
Query: 228 VLKGGGSCIFT--ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
V++ G C TD +E L +LP + VDL ++++LGKR+IN + +
Sbjct: 245 VIQQDGPCWLARVETDEQSWPNNVEQL-----LLPRHGNGVDLVLLMMQLGKRQINSVWV 299
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG Q AL+ G VDEL+LYI+P L+G +A + L L + F E++++GP
Sbjct: 300 EAGPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLTGLTQLSDAPEFVFSEVRQVGP 359
Query: 345 DIRI 348
D+R+
Sbjct: 360 DLRL 363
>gi|456737924|gb|EMF62601.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Stenotrophomonas maltophilia EPM1]
Length = 372
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 149/354 (42%), Positives = 217/354 (61%), Gaps = 9/354 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVI +R++ G+ + GG HAE+ AL A G +
Sbjct: 24 MANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALREA---GSEA 80
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V+ A+ DP P V G G L +AGI V
Sbjct: 81 RGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRNAGIEVA 140
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GLM +A E+N GF SR++R PW+R+K+A+SLD +T++ + SS+WIT +R D W
Sbjct: 141 EGLMATQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAREDVQHW 200
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-HQPYRIVIDSYLRIDPFFRVLKGGGSCIFT 238
RAR+ AILTG TVL D+P L VR T P R+V+DS LR RV +GG ++
Sbjct: 201 RARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECGRVREGGAPTVYL 260
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
D + D E +P+ G++DL AV+ L +R INE+H EAG L AL+
Sbjct: 261 -HDAAVSAPDAADA--EFASVPSAEGRLDLGAVLALLAERGINEVHTEAGATLAGALLRG 317
Query: 299 GCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G VDELLLY +P L+G+ + ++D++ +L+ + ++IG DIR+L R
Sbjct: 318 GWVDELLLYQAPTLLGDNGRPLLAGLGIDAMDQQHRLRVVDQRQIGEDIRLLLR 371
>gi|408822364|ref|ZP_11207254.1| riboflavin biosynthesis protein RibD [Pseudomonas geniculata N1]
Length = 381
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 150/357 (42%), Positives = 216/357 (60%), Gaps = 15/357 (4%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVI +R++ G+ + GG HAE+ AL A G D
Sbjct: 33 MANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQCAGGPHAEVFALREA---GSDA 89
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V+ A+ DP P V G G L +AGI V
Sbjct: 90 RGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRNAGIEVA 149
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GLM +A E+N GF SR++R PW+R+K+A+SLD +T++ + SS+WIT +R D W
Sbjct: 150 EGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAREDVQHW 209
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-HQPYRIVIDSYLRIDPFFRVLKGGGSCIF- 237
RAR+ AILTG TVL D+P L VR T P R+V+DS LR RV +GG ++
Sbjct: 210 RARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECSRVREGGAPTLYL 269
Query: 238 --TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
TA P + E +P G++DL AV+ L +R INE+H EAG L AL
Sbjct: 270 HGTAVSAP------DAADAEFASVPCVDGRLDLGAVLALLAERGINEVHTEAGATLAGAL 323
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+ G VDELLLY +P L+G+ + ++D++ +L + +++G DIR+L R
Sbjct: 324 LRGGWVDELLLYQAPTLLGDNGRPLLAGLGIEAMDQQRRLHVVDQRQVGEDIRLLLR 380
>gi|432748867|ref|ZP_19983490.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE29]
gi|431300605|gb|ELF90156.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE29]
Length = 367
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|167586436|ref|ZP_02378824.1| riboflavin biosynthesis protein RibD [Burkholderia ubonensis Bu]
Length = 257
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 126/230 (54%), Positives = 166/230 (72%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ ++PNPRVGCVIVK+ +I G+T+ G +HAE+ AL +A ++G+DV STVY+T
Sbjct: 18 ARGMYTTTPNPRVGCVIVKDGDVIGEGFTQPAGQDHAEVQALKDARSRGHDVAGSTVYVT 77
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+FG TPPC ALI + + KV+ A+ DPNP VSG+G+ L AGI V+ GL+ EA
Sbjct: 78 LEPCSHFGRTPPCANALIDARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRCGLLAHEA 137
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
E+NIGF SRM RG PWVRMK A+SLD +T+L + SQWIT ++R D H WRAR+CAIL
Sbjct: 138 GELNIGFVSRMTRGRPWVRMKTAASLDGRTALPSGESQWITGDDARLDGHAWRARACAIL 197
Query: 188 TGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
TGIGTV +D+P+L VR I T QP R+++DS L + R+L+G IF
Sbjct: 198 TGIGTVREDDPQLTVRGIDTPRQPRRVLVDSRLELPLDARLLEGAPLLIF 247
>gi|123443368|ref|YP_001007342.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia enterocolitica subsp. enterocolitica
8081]
gi|420257480|ref|ZP_14760238.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia enterocolitica subsp. enterocolitica
WA-314]
gi|122090329|emb|CAL13195.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Yersinia enterocolitica subsp. enterocolitica 8081]
gi|404515129|gb|EKA28906.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Yersinia enterocolitica subsp. enterocolitica
WA-314]
Length = 369
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 219/365 (60%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L +SPNP VGCV+V++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+K+V+ A+ DPNP V+G+G+ +L AG+ V
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALLTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEVD 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P++++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP RI++DS+ R+ P +
Sbjct: 185 RAQSSAILSTSATVLADDPALTVRWQELDAQTQALYPQDALRQPVRIIVDSHNRVTPQHK 244
Query: 228 VLKGGGSCIFT---ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
V++ G C A + + E ++LP + VDL ++++LGKR+IN +
Sbjct: 245 VIQQDGPCWLARVEADEQSWPNNV------EQLLLPRHGNGVDLVLLMMQLGKRQINSVW 298
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG Q AL+ G VDEL+LYI+P L+G +A + L L + F E++++G
Sbjct: 299 VEAGPQFAGALLQAGVVDELILYIAPKLLGSDARGLCQLTGLTQLSDAPEFVFSEVRQVG 358
Query: 344 PDIRI 348
PD+R+
Sbjct: 359 PDLRL 363
>gi|311280696|ref|YP_003942927.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae SCF1]
gi|308749891|gb|ADO49643.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae SCF1]
Length = 368
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 220/360 (61%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNPRVGCVIV++ I+ G+ G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPRVGCVIVRDGDIVGEGFHLRAGEPHAEVHALRMA---GDKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AG+ V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGVEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G PW+++K+ +SLD T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPWLQLKLGASLDGGTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + S+ QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWEELDADTQASYPQENLRQPVRIVIDSRNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G F TD ++ D G + +P + G++DL ++++LG+R+IN + +EA
Sbjct: 244 IVHQPGETWFARTDEDSRQ--WPD-GVSTLNIPAHNGQLDLVLLMMQLGRRQINSVWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G +L AL+ G VDEL++Y++P L+G +A + LP L + +F+EI+++GPD+
Sbjct: 301 GPRLAGALLQAGVVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPQFRFNEIRQVGPDL 360
>gi|320540315|ref|ZP_08039967.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Serratia symbiotica str. Tucson]
gi|320029635|gb|EFW11662.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Serratia symbiotica str. Tucson]
Length = 371
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 220/365 (60%), Gaps = 20/365 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFKLARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALCMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ QL AGI V
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVTAMQDPNPQVAGRGLYQLQQAGIEVC 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P+V++K+A SLD +T++ + SQWITS ++R D
Sbjct: 125 HGLMLAEAEAVNPGFLKRMRTGFPYVQLKLAVSLDGRTAMASGESQWITSSQARQDVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP+RI++DS R+ P R
Sbjct: 185 RAQSAAILSTSATVLADDPALTVRWDELDAETQSLYPQENLRQPWRIILDSQNRVTPQHR 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G+ + A P K+ +D+ E ++ P + G VDL +++ L KR++N + +EA
Sbjct: 245 VVQQPGA-TWLARLQPDKQAWPQDV--EQLIFPAHGGGVDLVVMMMHLAKRQVNSIWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G QL+ AL+ VDEL+LY++P L+G + + LP L + F E++++GPD+
Sbjct: 302 GAQLSGALLQAVLVDELVLYLAPKLLGDDGRGLCHLPGLEQLADAPEFVFSEVRQVGPDL 361
Query: 347 RILAR 351
R+ R
Sbjct: 362 RLRLR 366
>gi|237809265|ref|YP_002893705.1| riboflavin biosynthesis protein RibD [Tolumonas auensis DSM 9187]
gi|237501526|gb|ACQ94119.1| riboflavin biosynthesis protein RibD [Tolumonas auensis DSM 9187]
Length = 370
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/368 (40%), Positives = 220/368 (59%), Gaps = 26/368 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ ALQ A+ +SPNP VGCVIV + RI+ G+ G HAE+ AL A G
Sbjct: 10 MSRALQLAEQGRFTTSPNPNVGCVIVADGRIVGEGFHLRAGEPHAEVHALRMA---GDKA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP VSG+G+ +L AG++++
Sbjct: 67 RGATAYVTLEPCSHFGRTPPCADALVNAGVARVVAAMEDPNPQVSGRGMRRLADAGVTIQ 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+Q +A +N GF RM+ G+P+VR+K+A+SLD +T+L N SQWITS +R D W
Sbjct: 127 TGLLQAQAEALNPGFIKRMRHGLPYVRLKLAASLDGRTALANGQSQWITSPAARADVQRW 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILTG TVL D+P LNVR S++ + QP RI+IDS RI P
Sbjct: 187 RAQSSAILTGADTVLTDDPSLNVRWEQLPLSVQQCYAKDNVRQPIRIIIDSRQRIVPSAH 246
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNL---GKVDLQAVIIELGKRKINELH 284
+ G + K +V L L GK+DL ++ L +R IN++
Sbjct: 247 LFSIPGEIWLA------RHKEQGQWPEQVQQLSTPLADSGKLDLVQLMQTLAQRHINDIW 300
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG L AL+ G VDEL++Y++P L+G A + LP + + + ++ +++K+G
Sbjct: 301 VEAGASLAGALMSAGLVDELMVYLAPKLMGNPARGLVNLPEFKHMSEVNEWQWQDVRKVG 360
Query: 344 PDIRILAR 351
D+R+ R
Sbjct: 361 NDLRLTLR 368
>gi|386815128|ref|ZP_10102346.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Thiothrix
nivea DSM 5205]
gi|386419704|gb|EIJ33539.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Thiothrix
nivea DSM 5205]
Length = 371
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 218/360 (60%), Gaps = 15/360 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + + PNPRVGCVIV+ +I+ G+ + G HAE+ AL A G
Sbjct: 14 MARALQLARRGLYTTHPNPRVGCVIVRNVQIVGEGWHERAGEPHAEVHALRRA---GEAA 70
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +T Y+TLEPCS+ G TPPC AL+++G+K+V+ A+ DPNPLV+G G+ L AGI
Sbjct: 71 HGATAYVTLEPCSHHGRTPPCANALVQAGVKRVVTAMVDPNPLVAGNGLKLLQVAGIETA 130
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N GF SRM+R P++R+K+A SLD +T++ + S W+T +R D
Sbjct: 131 SGLLESEARALNPGFISRMERNRPYIRLKMAMSLDGRTAMESGESVWVTGDAARRDVQFL 190
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-------HQPYRIVIDSYLRIDPFFRVLK-G 231
RA++ AILTGIGTVL D+P LNVR + QP R+V+DS LR P R+L
Sbjct: 191 RAQAGAILTGIGTVLADDPSLNVRLTAEALGIQGEVRQPIRVVLDSELRFPPDARLLNIP 250
Query: 232 GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQL 291
G + I+T + K LE +G +V + K+ L V+ L + I E+H+EAG L
Sbjct: 251 GETLIYTCSANDDKIAQLEQVGAKVRRF--DAKKLHLSEVMTALVEDGITEVHVEAGATL 308
Query: 292 NTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
AL+ +G DEL++Y++P L+G A +F LP + ++ L +I+ IG D RI+A
Sbjct: 309 AGALVEQGFADELVIYMAPHLMGSSARALFNLPHIAHMQDRLALTIRDIRAIGQDWRIIA 368
>gi|338731395|ref|YP_004660787.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Thermotoga
thermarum DSM 5069]
gi|335365746|gb|AEH51691.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Thermotoga thermarum DSM 5069]
Length = 367
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 157/353 (44%), Positives = 226/353 (64%), Gaps = 13/353 (3%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDAL--LNAAAQGY 57
M+LAL+ AK +SPNP VG VIVK+ +I++ GY K G HAEI+AL LN AQ
Sbjct: 7 MSLALKLAKKGKYTTSPNPMVGAVIVKDGKILATGYHKKAGQPHAEINALSKLNFQAQ-- 64
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
N +Y+TLEPCS++G TPPC +A+I+SGI+KV+IA DPNPLV+GKGV +L +AGI
Sbjct: 65 ---NCEMYVTLEPCSHYGRTPPCADAIIRSGIRKVVIATLDPNPLVNGKGVEKLKNAGIE 121
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V G+++++A ++N FF + IP+V +KIA +LD K +L N S+WITS++SR H
Sbjct: 122 VVCGVLEEKAKKLNEKFFKYITTKIPFVALKIAQTLDGKIALKNGESKWITSEKSREYVH 181
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
R A+LTGIGT+LKD+P+LNVR K QP RI++DS L+I +VL+ I
Sbjct: 182 KLRMEYDAVLTGIGTILKDDPQLNVRLKKVYKQPLRIILDSKLKIPLSAKVLEDPSKVII 241
Query: 238 TATDLPMKRKILEDL---GHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
T L K K LE+L G EVI+ G VDL++ + LG++KI + +EAG L T+
Sbjct: 242 LTTALADKEK-LEELRSKGVEVIITNEKNGIVDLESALKILGEKKITSVMVEAGPTLLTS 300
Query: 295 LILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ E D++ L+I+P + G ++ ++F+ + K K ++KIG D+
Sbjct: 301 FLKESLFDKIYLFIAPKIFGADSKSVFSELGLEDISKSQKFSLESVKKIGEDL 353
>gi|384415866|ref|YP_005625228.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|320016370|gb|ADV99941.1| tRNA-specific adenosine deaminase [Yersinia pestis biovar
Medievalis str. Harbin 35]
Length = 369
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 219/365 (60%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + +L +SPNP VGCV+V++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELVRLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 65 RGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAGIAVD 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR + QP +I++DS+ R+ P +
Sbjct: 185 RAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVTPRHK 244
Query: 228 VLKGGGSCIFT---ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
V++ G C A D P I E ++LP VDL ++++LGKR IN +
Sbjct: 245 VIQQDGPCWLARVDADDQPWPGNI------EQLLLPRYGNGVDLVVLMMQLGKRNINSVW 298
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG QL AL+ G VDEL+LYI+P L+G +A + L +L + + F +++ +G
Sbjct: 299 VEAGPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDVRLVG 358
Query: 344 PDIRI 348
PD+R+
Sbjct: 359 PDLRL 363
>gi|301022597|ref|ZP_07186469.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 69-1]
gi|300397478|gb|EFJ81016.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 69-1]
Length = 367
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|424667036|ref|ZP_18104061.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia
Ab55555]
gi|401069705|gb|EJP78226.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia
Ab55555]
Length = 361
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/354 (41%), Positives = 217/354 (61%), Gaps = 9/354 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVI +R++ G+ + GG HAE+ AL A G +
Sbjct: 13 MANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALREA---GSEA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V+ A+ DP P V G G L +AGI V
Sbjct: 70 RGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRNAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GLM +A E+N GF SR++R PW+R+K+A+SLD +T++ + SS+WIT +R D W
Sbjct: 130 EGLMATQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAREDVQHW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-HQPYRIVIDSYLRIDPFFRVLKGGGSCIFT 238
RAR+ AILTG TVL D+P L VR T P R+V+DS LR RV +GG ++
Sbjct: 190 RARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECGRVREGGAPTLYL 249
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
D + D E +P+ G++DL AV+ L +R INE+H EAG L AL+
Sbjct: 250 -HDAAVSAPDAADA--EFASVPSAEGRLDLGAVLALLAERGINEVHTEAGATLAGALLRG 306
Query: 299 GCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G VDELLLY +P L+G+ + ++D++ +L+ + +++G DIR+L R
Sbjct: 307 GWVDELLLYQAPTLLGDNGRPLLAGLGIDAMDQQRRLRVVDQRQVGGDIRLLLR 360
>gi|387605923|ref|YP_006094779.1| riboflavin biosynthesis protein [Escherichia coli 042]
gi|284920223|emb|CBG33282.1| riboflavin biosynthesis protein [Escherichia coli 042]
Length = 367
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|419916870|ref|ZP_14435154.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli KD2]
gi|388395271|gb|EIL56495.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli KD2]
Length = 361
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|190572771|ref|YP_001970616.1| deaminase [Stenotrophomonas maltophilia K279a]
gi|190010693|emb|CAQ44302.1| putative deaminase [Stenotrophomonas maltophilia K279a]
Length = 361
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/354 (41%), Positives = 217/354 (61%), Gaps = 9/354 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVI +R++ G+ + GG HAE+ AL A G +
Sbjct: 13 MANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALREA---GSEA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V+ A+ DP P V G G L +AGI V
Sbjct: 70 RGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRNAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GLM +A E+N GF SR++R PW+R+K+A+SLD +T++ + SS+WIT +R D W
Sbjct: 130 EGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAREDVQHW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-HQPYRIVIDSYLRIDPFFRVLKGGGSCIFT 238
RAR+ AILTG TVL D+P L VR T P R+V+DS LR RV +GG ++
Sbjct: 190 RARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECGRVREGGAPTLYM 249
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
D + D E +P+ G++DL AV+ L +R INE+H EAG L AL+
Sbjct: 250 -HDAAVSAPDAADA--EFASVPSAEGRLDLGAVLALLAERGINEVHTEAGATLAGALLRG 306
Query: 299 GCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G +DELLLY +P L+G+ + ++D++ +L+ + +++G DIR+L R
Sbjct: 307 GWMDELLLYQAPTLLGDNGRPLLAGLGINAMDQQRRLRVVDQRQVGEDIRLLLR 360
>gi|419923214|ref|ZP_14441176.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 541-15]
gi|388394266|gb|EIL55569.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 541-15]
Length = 361
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHH 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|440288790|ref|YP_007341555.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Enterobacteriaceae bacterium strain FGI 57]
gi|440048312|gb|AGB79370.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Enterobacteriaceae bacterium strain FGI 57]
Length = 367
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/352 (42%), Positives = 211/352 (59%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNPRVGCVIV + I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPRVGCVIVNQGEIVGEGFHYRAGEPHAEVHALRMA---GEKAKGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMSEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G P+V++K+ +SLD +T++ + SQWITS ++R D RA S AIL
Sbjct: 132 EALNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAESHAIL 191
Query: 188 TGIGTVLKDNPRLNVR----SIKTS--------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR S +T QP RIV+DS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWNELSAQTQALYAEENLRQPVRIVVDSQNRVTPEHRIVQQPGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
F T +R E + + I+ P + G VDL ++++LGK++IN + +EAG L AL
Sbjct: 252 WFARTQSD-ERSWPESV--KSIITPEHNGHVDLVLLMMQLGKQQINSIWVEAGPTLAGAL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
I G VDEL++Y++P L+G +A + LP L KF+EI+ +GPDI
Sbjct: 309 IQAGVVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRHVGPDI 360
>gi|419862437|ref|ZP_14385042.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O103:H25 str. CVM9340]
gi|388345194|gb|EIL10980.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O103:H25 str. CVM9340]
Length = 367
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 216/365 (59%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A + D
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMAGEKAKD- 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 66 --ATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|300818262|ref|ZP_07098473.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 107-1]
gi|415873807|ref|ZP_11540980.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 79-10]
gi|432804492|ref|ZP_20038438.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE91]
gi|432932748|ref|ZP_20132602.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE184]
gi|433192341|ref|ZP_20376363.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE90]
gi|300529153|gb|EFK50215.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 107-1]
gi|342930611|gb|EGU99333.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 79-10]
gi|431357825|gb|ELG44491.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE91]
gi|431456781|gb|ELH37124.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE184]
gi|431721817|gb|ELJ85809.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE90]
Length = 367
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|238783633|ref|ZP_04627654.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
bercovieri ATCC 43970]
gi|238715511|gb|EEQ07502.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
bercovieri ATCC 43970]
Length = 369
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 219/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A++ + PNP VGCV+V++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARMGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAVD 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P++++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR + QP RI++DS+ R+ P +
Sbjct: 185 RAESAAILSTSATVLADDPSLTVRWDELDSETQGWYPQARLRQPIRIILDSHNRVTPHHK 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G C + + L E ++LP + VDL ++++LGKR+IN + +EA
Sbjct: 245 VIQQDGPCWLARVE---ADEQLWPANVEQLLLPRHGNGVDLVLLMMQLGKRQINSVWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G QL AL+ G VDEL+LYI+P L+G +A + L SL + + F +++ +GPD+
Sbjct: 302 GPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELTGLTSLSQAPEFVFSDVRPVGPDL 361
Query: 347 RI 348
R+
Sbjct: 362 RL 363
>gi|432717422|ref|ZP_19952424.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE9]
gi|431267026|gb|ELF58559.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE9]
Length = 367
Score = 271 bits (694), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|417792020|ref|ZP_12439432.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Cronobacter sakazakii E899]
gi|449309261|ref|YP_007441617.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Cronobacter sakazakii SP291]
gi|333953908|gb|EGL71798.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Cronobacter sakazakii E899]
gi|449099294|gb|AGE87328.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Cronobacter sakazakii SP291]
Length = 367
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 211/350 (60%), Gaps = 19/350 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNPRVGCVIVKE I+ G+ GG HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPRVGCVIVKEGVIVGEGFHLRAGGPHAEVHALRMA---GDKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA +N
Sbjct: 76 SHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMSEAEALN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D RA S AILT
Sbjct: 136 KGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAESHAILTTSA 195
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + QP RIV+D ++ P +++ G + A
Sbjct: 196 TVLADDPSMTVRWDELGEETQAVYPRENLRQPLRIVLDRQNQVTPAHKIVNQPGET-WLA 254
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P E G E + P + GK+DL ++++LGKR++N L +EAG QL AL+ G
Sbjct: 255 RACPDDTVWPE--GVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEAGPQLAGALLQAG 312
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDEL++Y++P L+G EA +FTLP L +L+F + ++GPD+R+
Sbjct: 313 LVDELIVYMAPKLLGSEARGLFTLPGLERLADAPRLEFRDAVQVGPDLRL 362
>gi|425276287|ref|ZP_18667631.1| riboflavin biosynthesis protein RibD [Escherichia coli ARS4.2123]
gi|408207199|gb|EKI31953.1| riboflavin biosynthesis protein RibD [Escherichia coli ARS4.2123]
Length = 361
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMTSGESQWITSPQARRDVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|415821067|ref|ZP_11510081.1| riboflavin biosynthesis protein RibD [Escherichia coli OK1180]
gi|417637713|ref|ZP_12287888.1| riboflavin biosynthesis protein RibD [Escherichia coli TX1999]
gi|419379296|ref|ZP_13920277.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC14C]
gi|419948951|ref|ZP_14465214.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli CUMT8]
gi|323178323|gb|EFZ63901.1| riboflavin biosynthesis protein RibD [Escherichia coli OK1180]
gi|345395457|gb|EGX25201.1| riboflavin biosynthesis protein RibD [Escherichia coli TX1999]
gi|378234441|gb|EHX94519.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC14C]
gi|388420483|gb|EIL80175.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli CUMT8]
Length = 361
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 238 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 289
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 290 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 349
Query: 342 IGPDI 346
+GPD+
Sbjct: 350 VGPDV 354
>gi|416895837|ref|ZP_11925721.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_7v]
gi|417114451|ref|ZP_11965722.1| riboflavin biosynthesis protein RibD [Escherichia coli 1.2741]
gi|422802290|ref|ZP_16850784.1| riboflavin biosynthesis protein RibD [Escherichia coli M863]
gi|323965096|gb|EGB60555.1| riboflavin biosynthesis protein RibD [Escherichia coli M863]
gi|327254735|gb|EGE66351.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_7v]
gi|386141526|gb|EIG82676.1| riboflavin biosynthesis protein RibD [Escherichia coli 1.2741]
Length = 367
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TV+ D+P L VR + QP RIVID+ R+ P R
Sbjct: 184 RAQSHAILTSSATVMADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDNQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQSGETWFARTQED-SREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADVPQFKFKEIRHVGPDV 360
>gi|419937136|ref|ZP_14454051.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 576-1]
gi|388398291|gb|EIL59215.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 576-1]
Length = 361
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMVSGESQWITSPQARRDVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + LP L ++ KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIRHVGPDV 354
>gi|415836258|ref|ZP_11518670.1| riboflavin biosynthesis protein RibD [Escherichia coli RN587/1]
gi|417284187|ref|ZP_12071482.1| riboflavin biosynthesis protein RibD [Escherichia coli 3003]
gi|323191332|gb|EFZ76595.1| riboflavin biosynthesis protein RibD [Escherichia coli RN587/1]
gi|386242396|gb|EII84131.1| riboflavin biosynthesis protein RibD [Escherichia coli 3003]
Length = 367
Score = 271 bits (694), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMTSGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|417120964|ref|ZP_11970418.1| riboflavin biosynthesis protein RibD [Escherichia coli 97.0246]
gi|386148694|gb|EIG95129.1| riboflavin biosynthesis protein RibD [Escherichia coli 97.0246]
Length = 367
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL A++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVALMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIIYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|289663675|ref|ZP_06485256.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv.
vasculorum NCPPB 702]
Length = 369
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 215/352 (61%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR---AAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI +G+ +V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIDAGVTRVVAAMADPFPQVNGGGFALLRDAGIEVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M +A +N GF SR++RG PWVR+K+ +SLD +T+L + S+WIT ++R D W
Sbjct: 133 SGVMHAQARTLNRGFLSRVERGWPWVRIKLGASLDGRTALASGQSKWITGADARADVQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+CAILTG GTVL DNP + VR P R+V+DS LR + G ++
Sbjct: 193 RARACAILTGAGTVLADNPSMTVRLGDDTAFAPPLRVVLDSGLRTLACANIRDGDAPTLY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
D + G E LP + G+ DL AV+ L KR INE+H+EAG L+ AL+
Sbjct: 253 LHGDAVAATAL---NGAEFAALPLSAGRFDLAAVLALLAKRGINEVHVEAGATLSGALLQ 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + +L ++ +L+ H+++++G D+R+
Sbjct: 310 AGLVDELLIYMAPVLLGDTARPLLAGLGIETLAQRYELQLHDVRQLGQDLRL 361
>gi|432453259|ref|ZP_19695499.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE193]
gi|433031849|ref|ZP_20219664.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE112]
gi|430974601|gb|ELC91524.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE193]
gi|431560156|gb|ELI33677.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE112]
Length = 367
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPAHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + +LP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|218703696|ref|YP_002411215.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli UMN026]
gi|293403533|ref|ZP_06647624.1| ribD [Escherichia coli FVEC1412]
gi|298379145|ref|ZP_06989026.1| ribD [Escherichia coli FVEC1302]
gi|300900480|ref|ZP_07118647.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 198-1]
gi|417585207|ref|ZP_12235987.1| riboflavin biosynthesis protein RibD [Escherichia coli
STEC_C165-02]
gi|432352076|ref|ZP_19595385.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE2]
gi|432400524|ref|ZP_19643284.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE26]
gi|432474433|ref|ZP_19716446.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE208]
gi|432492709|ref|ZP_19734548.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE213]
gi|432521050|ref|ZP_19758215.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE228]
gi|432541267|ref|ZP_19778142.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE235]
gi|432629983|ref|ZP_19865933.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE80]
gi|432664601|ref|ZP_19900197.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE116]
gi|432773593|ref|ZP_20007883.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE54]
gi|432837962|ref|ZP_20071455.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE140]
gi|432884379|ref|ZP_20099335.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE158]
gi|432910099|ref|ZP_20117226.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE190]
gi|433017369|ref|ZP_20205640.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE105]
gi|433051712|ref|ZP_20238950.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE122]
gi|433157356|ref|ZP_20342232.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE177]
gi|433201834|ref|ZP_20385646.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE95]
gi|218430793|emb|CAR11667.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli UMN026]
gi|291429386|gb|EFF02406.1| ribD [Escherichia coli FVEC1412]
gi|298280258|gb|EFI21762.1| ribD [Escherichia coli FVEC1302]
gi|300355961|gb|EFJ71831.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 198-1]
gi|345341432|gb|EGW73837.1| riboflavin biosynthesis protein RibD [Escherichia coli
STEC_C165-02]
gi|430880709|gb|ELC03984.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE2]
gi|430929244|gb|ELC49755.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE26]
gi|431010373|gb|ELD24721.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE208]
gi|431013115|gb|ELD26849.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE213]
gi|431045604|gb|ELD55834.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE228]
gi|431064521|gb|ELD73388.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE235]
gi|431174502|gb|ELE74547.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE80]
gi|431204669|gb|ELF03227.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE116]
gi|431320714|gb|ELG08344.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE54]
gi|431391865|gb|ELG75469.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE140]
gi|431419967|gb|ELH02301.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE158]
gi|431447174|gb|ELH27916.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE190]
gi|431537539|gb|ELI13656.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE105]
gi|431575847|gb|ELI48570.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE122]
gi|431682042|gb|ELJ47811.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE177]
gi|431726350|gb|ELJ90160.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE95]
Length = 367
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + LP L ++ KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIRHVGPDV 360
>gi|440229709|ref|YP_007343502.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Serratia
marcescens FGI94]
gi|440051414|gb|AGB81317.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Serratia
marcescens FGI94]
Length = 370
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 218/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L ++PNP VGCVIV++ +I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTAPNPNVGCVIVRDGKIVGEGYHLRAGEPHAEVHALRMA---GELA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALINAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEVS 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P+V++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 125 HGLMLAEAEAVNRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR + QP RI++DS R+ P R
Sbjct: 185 RAESAAILSSSATVLADDPSLTVRWDELDADTQRFYPREHLRQPLRIILDSQNRVTPQHR 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G + A P ++ G E + LP + G +DL ++++L KR++N + +EA
Sbjct: 245 VVQQPGET-WLARLQPDQQAW--PAGVEQLALPAHGGGIDLVVMMMQLAKRQVNSIWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G QL+ AL+ G VDEL+ Y++P L+G+ A + LP L + + F E++++GPD+
Sbjct: 302 GAQLSGALLQAGLVDELIFYVAPKLLGDSARGLCQLPGLERLAEAPEFVFSEVRQVGPDL 361
Query: 347 RI 348
R+
Sbjct: 362 RL 363
>gi|432390341|ref|ZP_19633205.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE21]
gi|430922698|gb|ELC43445.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE21]
Length = 367
Score = 271 bits (693), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GDKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|193068693|ref|ZP_03049654.1| riboflavin biosynthesis protein RibD [Escherichia coli E110019]
gi|209917627|ref|YP_002291711.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli SE11]
gi|218552977|ref|YP_002385890.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli IAI1]
gi|260853634|ref|YP_003227525.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. 11368]
gi|260866572|ref|YP_003232974.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O111:H- str. 11128]
gi|293418481|ref|ZP_06660916.1| riboflavin biosynthesis protein RibD [Escherichia coli B088]
gi|300820347|ref|ZP_07100499.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 119-7]
gi|300903321|ref|ZP_07121249.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 84-1]
gi|301301562|ref|ZP_07207697.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 124-1]
gi|331666763|ref|ZP_08367637.1| riboflavin biosynthesis protein RibD [Escherichia coli TA271]
gi|415793719|ref|ZP_11496263.1| riboflavin biosynthesis protein RibD [Escherichia coli EPECa14]
gi|415828345|ref|ZP_11514942.1| riboflavin biosynthesis protein RibD [Escherichia coli OK1357]
gi|415862689|ref|ZP_11536129.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 85-1]
gi|417135393|ref|ZP_11980178.1| riboflavin biosynthesis protein RibD [Escherichia coli 5.0588]
gi|417190625|ref|ZP_12013221.1| riboflavin biosynthesis protein RibD [Escherichia coli 4.0522]
gi|417218265|ref|ZP_12023867.1| riboflavin biosynthesis protein RibD [Escherichia coli JB1-95]
gi|417268198|ref|ZP_12055559.1| riboflavin biosynthesis protein RibD [Escherichia coli 3.3884]
gi|417299421|ref|ZP_12086651.1| riboflavin biosynthesis protein RibD [Escherichia coli 900105
(10e)]
gi|417590091|ref|ZP_12240811.1| riboflavin biosynthesis protein RibD [Escherichia coli 2534-86]
gi|417595333|ref|ZP_12246003.1| riboflavin biosynthesis protein RibD [Escherichia coli 3030-1]
gi|417606401|ref|ZP_12256930.1| riboflavin biosynthesis protein RibD [Escherichia coli
STEC_DG131-3]
gi|418941163|ref|ZP_13494500.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H43 str. T22]
gi|419168408|ref|ZP_13712806.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC7A]
gi|419179402|ref|ZP_13723027.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC7C]
gi|419184959|ref|ZP_13728481.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC7D]
gi|419190207|ref|ZP_13733675.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC7E]
gi|419195506|ref|ZP_13738914.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC8A]
gi|419201533|ref|ZP_13744761.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC8B]
gi|419207409|ref|ZP_13750537.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC8C]
gi|419213849|ref|ZP_13756881.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC8D]
gi|419219674|ref|ZP_13762631.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC8E]
gi|419225134|ref|ZP_13768024.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC9A]
gi|419230923|ref|ZP_13773715.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC9B]
gi|419236256|ref|ZP_13779007.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC9C]
gi|419241849|ref|ZP_13784499.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC9D]
gi|419247255|ref|ZP_13789871.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC9E]
gi|419253035|ref|ZP_13795585.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC10A]
gi|419259044|ref|ZP_13801504.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC10B]
gi|419265044|ref|ZP_13807431.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC10C]
gi|419270732|ref|ZP_13813065.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC10D]
gi|419276531|ref|ZP_13818801.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC10E]
gi|419282132|ref|ZP_13824354.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC10F]
gi|419368696|ref|ZP_13909825.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC14A]
gi|419389827|ref|ZP_13930666.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC15A]
gi|419394999|ref|ZP_13935784.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC15B]
gi|419400350|ref|ZP_13941084.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC15C]
gi|419405521|ref|ZP_13946225.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC15D]
gi|419876942|ref|ZP_14398601.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H11 str. CVM9534]
gi|419882631|ref|ZP_14403841.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H11 str. CVM9545]
gi|419888469|ref|ZP_14408976.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H8 str. CVM9570]
gi|419893064|ref|ZP_14413070.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H8 str. CVM9574]
gi|419900620|ref|ZP_14420046.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. CVM9942]
gi|419908313|ref|ZP_14427047.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O26:H11 str. CVM10026]
gi|420088229|ref|ZP_14600133.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H8 str. CVM9602]
gi|420092961|ref|ZP_14604651.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H8 str. CVM9634]
gi|420103091|ref|ZP_14614005.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H11 str. CVM9455]
gi|420109720|ref|ZP_14619820.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H11 str. CVM9553]
gi|420113401|ref|ZP_14623144.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. CVM10021]
gi|420119613|ref|ZP_14628878.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. CVM10030]
gi|420125690|ref|ZP_14634481.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. CVM10224]
gi|420130801|ref|ZP_14639281.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. CVM9952]
gi|420384051|ref|ZP_14883439.1| riboflavin biosynthesis protein RibD [Escherichia coli EPECa12]
gi|422355359|ref|ZP_16436075.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 117-3]
gi|422777107|ref|ZP_16830760.1| riboflavin biosynthesis protein RibD [Escherichia coli H120]
gi|423710182|ref|ZP_17684532.1| riboflavin biosynthesis protein RibD [Escherichia coli B799]
gi|424747956|ref|ZP_18176108.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. CFSAN001629]
gi|424766711|ref|ZP_18194056.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H11 str. CFSAN001630]
gi|424768129|ref|ZP_18195421.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H8 str. CFSAN001632]
gi|425377229|ref|ZP_18761631.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1865]
gi|427803480|ref|ZP_18970547.1| bifunctional pyrimidine deaminase/reductase [Escherichia coli
chi7122]
gi|427808098|ref|ZP_18975163.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli]
gi|432375494|ref|ZP_19618508.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE12]
gi|432479775|ref|ZP_19721740.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE210]
gi|432678003|ref|ZP_19913430.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE142]
gi|432763702|ref|ZP_19998154.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE48]
gi|432830399|ref|ZP_20064008.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE135]
gi|432833467|ref|ZP_20067015.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE136]
gi|432966521|ref|ZP_20155441.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE203]
gi|433090735|ref|ZP_20277043.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE138]
gi|433128742|ref|ZP_20314222.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE163]
gi|433133562|ref|ZP_20318945.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE166]
gi|443616439|ref|YP_007380295.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli APEC O78]
gi|192958056|gb|EDV88498.1| riboflavin biosynthesis protein RibD [Escherichia coli E110019]
gi|209910886|dbj|BAG75960.1| pyrimidine deaminase/reductase [Escherichia coli SE11]
gi|218359745|emb|CAQ97286.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli IAI1]
gi|257752283|dbj|BAI23785.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O26:H11 str. 11368]
gi|257762928|dbj|BAI34423.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O111:H- str. 11128]
gi|291325009|gb|EFE64424.1| riboflavin biosynthesis protein RibD [Escherichia coli B088]
gi|300404616|gb|EFJ88154.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 84-1]
gi|300527132|gb|EFK48201.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 119-7]
gi|300843059|gb|EFK70819.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 124-1]
gi|315256239|gb|EFU36207.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 85-1]
gi|323152118|gb|EFZ38411.1| riboflavin biosynthesis protein RibD [Escherichia coli EPECa14]
gi|323184760|gb|EFZ70131.1| riboflavin biosynthesis protein RibD [Escherichia coli OK1357]
gi|323945315|gb|EGB41371.1| riboflavin biosynthesis protein RibD [Escherichia coli H120]
gi|324016680|gb|EGB85899.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 117-3]
gi|331065987|gb|EGI37871.1| riboflavin biosynthesis protein RibD [Escherichia coli TA271]
gi|345345264|gb|EGW77610.1| riboflavin biosynthesis protein RibD [Escherichia coli 2534-86]
gi|345361701|gb|EGW93859.1| riboflavin biosynthesis protein RibD [Escherichia coli 3030-1]
gi|345365615|gb|EGW97722.1| riboflavin biosynthesis protein RibD [Escherichia coli
STEC_DG131-3]
gi|375323522|gb|EHS69230.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H43 str. T22]
gi|378018814|gb|EHV81660.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC7A]
gi|378027863|gb|EHV90488.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC7C]
gi|378032377|gb|EHV94958.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC7D]
gi|378042310|gb|EHW04759.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC7E]
gi|378052727|gb|EHW15029.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC8A]
gi|378057127|gb|EHW19362.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC8B]
gi|378063065|gb|EHW25235.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC8C]
gi|378069160|gb|EHW31255.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC8D]
gi|378072728|gb|EHW34785.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC8E]
gi|378081836|gb|EHW43784.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC9A]
gi|378082751|gb|EHW44694.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC9B]
gi|378090478|gb|EHW52315.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC9C]
gi|378095172|gb|EHW56962.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC9D]
gi|378102736|gb|EHW64409.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC9E]
gi|378107871|gb|EHW69489.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC10A]
gi|378116893|gb|EHW78411.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC10B]
gi|378119279|gb|EHW80774.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC10C]
gi|378121677|gb|EHW83128.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC10D]
gi|378134720|gb|EHW96041.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC10E]
gi|378139955|gb|EHX01185.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC10F]
gi|378221902|gb|EHX82144.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC14A]
gi|378244629|gb|EHY04571.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC15A]
gi|378251851|gb|EHY11747.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC15B]
gi|378252181|gb|EHY12075.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC15C]
gi|378257910|gb|EHY17746.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC15D]
gi|385704830|gb|EIG41902.1| riboflavin biosynthesis protein RibD [Escherichia coli B799]
gi|386153247|gb|EIH04536.1| riboflavin biosynthesis protein RibD [Escherichia coli 5.0588]
gi|386191597|gb|EIH80338.1| riboflavin biosynthesis protein RibD [Escherichia coli 4.0522]
gi|386193148|gb|EIH87447.1| riboflavin biosynthesis protein RibD [Escherichia coli JB1-95]
gi|386230556|gb|EII57911.1| riboflavin biosynthesis protein RibD [Escherichia coli 3.3884]
gi|386257213|gb|EIJ12704.1| riboflavin biosynthesis protein RibD [Escherichia coli 900105
(10e)]
gi|388341925|gb|EIL08002.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H11 str. CVM9534]
gi|388360339|gb|EIL24560.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H8 str. CVM9570]
gi|388361261|gb|EIL25395.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H11 str. CVM9545]
gi|388368648|gb|EIL32273.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H8 str. CVM9574]
gi|388375267|gb|EIL38293.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O26:H11 str. CVM10026]
gi|388377661|gb|EIL40456.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. CVM9942]
gi|391309560|gb|EIQ67228.1| riboflavin biosynthesis protein RibD [Escherichia coli EPECa12]
gi|394390740|gb|EJE67700.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H8 str. CVM9602]
gi|394394587|gb|EJE71150.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. CVM10224]
gi|394399966|gb|EJE75927.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H8 str. CVM9634]
gi|394405910|gb|EJE81007.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H11 str. CVM9553]
gi|394409081|gb|EJE83668.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H11 str. CVM9455]
gi|394412020|gb|EJE86200.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. CVM10021]
gi|394431075|gb|EJF03318.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. CVM10030]
gi|394433338|gb|EJF05370.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. CVM9952]
gi|408310063|gb|EKJ27147.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1865]
gi|412961662|emb|CCK45569.1| bifunctional pyrimidine deaminase/reductase [Escherichia coli
chi7122]
gi|412968277|emb|CCJ42894.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli]
gi|421934177|gb|EKT91954.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H11 str. CFSAN001630]
gi|421945345|gb|EKU02562.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O26:H11 str. CFSAN001629]
gi|421946767|gb|EKU03881.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O111:H8 str. CFSAN001632]
gi|430901398|gb|ELC23366.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE12]
gi|431010792|gb|ELD25136.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE210]
gi|431207639|gb|ELF05893.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE142]
gi|431313354|gb|ELG01327.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE48]
gi|431380161|gb|ELG65061.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE135]
gi|431388629|gb|ELG72352.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE136]
gi|431475882|gb|ELH55686.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE203]
gi|431615187|gb|ELI84317.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE138]
gi|431651612|gb|ELJ18851.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE163]
gi|431663377|gb|ELJ30139.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE166]
gi|443420947|gb|AGC85851.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli APEC O78]
Length = 367
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|432429562|ref|ZP_19672022.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE181]
gi|432639532|ref|ZP_19875377.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE83]
gi|433176859|ref|ZP_20361326.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE82]
gi|430947397|gb|ELC67095.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE181]
gi|431185107|gb|ELE84837.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE83]
gi|431710564|gb|ELJ74938.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE82]
Length = 367
Score = 271 bits (693), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMVSGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + LP L ++ KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIRHVGPDV 360
>gi|417144568|ref|ZP_11986374.1| riboflavin biosynthesis protein RibD [Escherichia coli 1.2264]
gi|386164451|gb|EIH26237.1| riboflavin biosynthesis protein RibD [Escherichia coli 1.2264]
Length = 367
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQ------------PYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + Q P RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPTLTVRWSELDEQTQALYPQQNLRLPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|289671055|ref|ZP_06492130.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 369
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 215/352 (61%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR---AAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI +G+ +V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIDAGVTRVVAAMADPFPQVNGGGFALLRDAGIEVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M +A +N GF SR++RG PWVR+K+ +SLD +T+L + S+WIT ++R D W
Sbjct: 133 SGVMHAQARTLNRGFLSRVERGWPWVRIKLGASLDGRTALASGQSKWITGADARADVQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+CAILTG GTVL DNP + VR P R+V+DS LR + G ++
Sbjct: 193 RARACAILTGAGTVLADNPSMTVRLGDDTAFAPPLRVVLDSGLRTLACANIRDGDAPTLY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
D + G E LP + G+ DL AV+ L KR INE+H+EAG L+ AL+
Sbjct: 253 LHGDAIAATAL---NGAEFAALPLSAGRFDLAAVLALLAKRGINEVHVEAGATLSGALLQ 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + +L ++ +L+ H+++++G D+R+
Sbjct: 310 AGLVDELLIYMAPVLLGDTARPLLAGLGIETLAQRYELQLHDVRQLGQDLRL 361
>gi|292487445|ref|YP_003530317.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Erwinia amylovora CFBP1430]
gi|292898687|ref|YP_003538056.1| riboflavin biosynthesis protein RibD [Erwinia amylovora ATCC 49946]
gi|428784379|ref|ZP_19001870.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Erwinia amylovora ACW56400]
gi|291198535|emb|CBJ45643.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Erwinia amylovora ATCC 49946]
gi|291552864|emb|CBA19909.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Erwinia amylovora CFBP1430]
gi|426275941|gb|EKV53668.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Erwinia amylovora ACW56400]
Length = 367
Score = 271 bits (692), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 215/365 (58%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCV+V++ +I+ GY G HAE+ AL A G
Sbjct: 7 MARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHMRAGEPHAEVHALRMA---GEKS 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+K+V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCEALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G PWV++K+ +SLD +T++ + SQWITS E+R D
Sbjct: 124 HGLMMPEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS------------IKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL DNP L VR + QP R+++DS R+ P R
Sbjct: 184 RAQSSAILSTSATVLADNPALTVRHDELDRASLADYPVDLLRQPVRVIVDSQNRVTPRHR 243
Query: 228 VLKGGGSCIFTAT---DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
++ G T DL + + +++P ++DL A+++ LG+++IN L
Sbjct: 244 LISQPGETWLARTAGDDLDWPDNVSQ------LMVPRYQDRLDLVAMLMLLGRKQINSLW 297
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG Q AL+ G VDEL++Y++P L+G+A + LP L F +I+++G
Sbjct: 298 VEAGAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLEMLASVPVFTFSDIRQVG 357
Query: 344 PDIRI 348
PDIR+
Sbjct: 358 PDIRL 362
>gi|254491989|ref|ZP_05105167.1| riboflavin biosynthesis protein RibD [Methylophaga thiooxidans
DMS010]
gi|224462804|gb|EEF79075.1| riboflavin biosynthesis protein RibD [Methylophaga thiooxydans
DMS010]
Length = 368
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 146/362 (40%), Positives = 221/362 (61%), Gaps = 21/362 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q A+ + + PNPRVGCVIVK II G+ G HAE++A+ A G+
Sbjct: 8 MARAIQLAERGLYTTDPNPRVGCVIVKNDEIIGEGWHMRAGEGHAEVNAI---QAAGHAA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+FG TPPC +ALI + +K+V +A+ DPNP+VSG G+ +L AG+ V
Sbjct: 65 EGADCYVTLEPCSHFGRTPPCVDALITAKVKRVFVAMTDPNPVVSGSGITRLRQAGVEVH 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
++ ++ ++N GF RM+ G P++R K+A SLD +T++ + S+WIT E+R D
Sbjct: 125 TDILAAQSEKLNPGFCQRMRIGKPFIRSKLAMSLDGRTAMASGESKWITGPEARADVQKL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH----------QPYRIVIDSYLRIDPFFRVL 229
RARS AI+TGIGTVL D+P LNVR ++ + QP R+V+DS +R+ R+L
Sbjct: 185 RARSSAIMTGIGTVLADDPLLNVRPEQSDNTWYPQGQKVRQPLRVVVDSKMRMPENARIL 244
Query: 230 KGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGY 289
+ + TA D G E IVLP + +DL A++ L +R++NEL +EAG
Sbjct: 245 QEKRVLLATAQDKKAPN------GAESIVLPEDGDIIDLTALMSVLAQREVNELMVEAGG 298
Query: 290 QLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
LN A++ +DEL++Y++P ++G+ A +F LP ++ + I L +++ IG D RI
Sbjct: 299 VLNGAMLKARLIDELVIYMAPKIMGDMARGVFHLPGMETMAQNISLNITDMRPIGKDWRI 358
Query: 349 LA 350
A
Sbjct: 359 TA 360
>gi|331661791|ref|ZP_08362714.1| riboflavin biosynthesis protein RibD [Escherichia coli TA143]
gi|432769214|ref|ZP_20003587.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE50]
gi|432959797|ref|ZP_20150083.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE202]
gi|433061630|ref|ZP_20248596.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE125]
gi|331060213|gb|EGI32177.1| riboflavin biosynthesis protein RibD [Escherichia coli TA143]
gi|431319254|gb|ELG06938.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE50]
gi|431478692|gb|ELH58437.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE202]
gi|431588334|gb|ELI59619.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE125]
Length = 367
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMESGESQWITSPQARLDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|419805599|ref|ZP_14330731.1| riboflavin biosynthesis protein RibD [Escherichia coli AI27]
gi|384471421|gb|EIE55500.1| riboflavin biosynthesis protein RibD [Escherichia coli AI27]
Length = 367
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 216/365 (59%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTAT-----DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T + P + L ++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQDDSSEWPETVRTL--------LIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|419344058|ref|ZP_13885442.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC13A]
gi|419348491|ref|ZP_13889844.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC13B]
gi|419928028|ref|ZP_14445748.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 541-1]
gi|378190557|gb|EHX51141.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC13A]
gi|378204153|gb|EHX64569.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC13B]
gi|388406279|gb|EIL66685.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 541-1]
Length = 361
Score = 271 bits (692), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 214/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED ++ P + G +DL ++++LGK++IN
Sbjct: 238 IVQQPGETWFARTQ--------EDSSEWPETVRTLLTPEHKGHLDLVVLMMQLGKQQINS 289
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 290 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 349
Query: 342 IGPDI 346
+GPD+
Sbjct: 350 VGPDV 354
>gi|191166718|ref|ZP_03028545.1| riboflavin biosynthesis protein RibD [Escherichia coli B7A]
gi|309794861|ref|ZP_07689282.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 145-7]
gi|416341355|ref|ZP_11675978.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Escherichia coli EC4100B]
gi|417223910|ref|ZP_12027201.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.154]
gi|417600691|ref|ZP_12251276.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_94C]
gi|425421023|ref|ZP_18802254.1| riboflavin biosynthesis protein RibD [Escherichia coli 0.1288]
gi|432812523|ref|ZP_20046372.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE101]
gi|190903229|gb|EDV62951.1| riboflavin biosynthesis protein RibD [Escherichia coli B7A]
gi|308121514|gb|EFO58776.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 145-7]
gi|320201655|gb|EFW76231.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Escherichia coli EC4100B]
gi|345354036|gb|EGW86263.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_94C]
gi|386198958|gb|EIH97949.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.154]
gi|408347885|gb|EKJ62028.1| riboflavin biosynthesis protein RibD [Escherichia coli 0.1288]
gi|431357415|gb|ELG44082.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE101]
Length = 367
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVILMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|417168693|ref|ZP_12001144.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0741]
gi|386170741|gb|EIH42794.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0741]
Length = 367
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQVGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|293408560|ref|ZP_06652399.1| riboflavin biosynthesis protein RibD [Escherichia coli B354]
gi|432541789|ref|ZP_19778650.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE236]
gi|432547133|ref|ZP_19783930.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE237]
gi|432620516|ref|ZP_19856562.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE76]
gi|432791662|ref|ZP_20025756.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE78]
gi|432797629|ref|ZP_20031657.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE79]
gi|432813909|ref|ZP_20047720.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE115]
gi|291471738|gb|EFF14221.1| riboflavin biosynthesis protein RibD [Escherichia coli B354]
gi|431078306|gb|ELD85364.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE236]
gi|431085306|gb|ELD91419.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE237]
gi|431162875|gb|ELE63315.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE76]
gi|431342458|gb|ELG29437.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE78]
gi|431345849|gb|ELG32763.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE79]
gi|431368928|gb|ELG55159.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE115]
Length = 367
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMESGESQWITSPQARLDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + LP L ++ KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIRHVGPDV 360
>gi|308048548|ref|YP_003912114.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Ferrimonas balearica DSM 9799]
gi|307630738|gb|ADN75040.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Ferrimonas balearica DSM 9799]
Length = 373
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 216/365 (59%), Gaps = 24/365 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCV+V++ ++ G+ GG HAE+ AL A G
Sbjct: 10 MARALELARRGQLTTRPNPRVGCVLVRDGEVVGEGFHIRAGGPHAEVHALR---AAGDKA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC++ALI +G+ +V+ A+ DPNP V+G+G+A L +AGI +
Sbjct: 67 RGATAYVTLEPCSHYGRTPPCSQALIDAGVARVVAAMVDPNPQVAGRGLAMLEAAGIETQ 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P+VR+K+A+SLD +T+L N S+WIT E+R D
Sbjct: 127 HGLMANEAEAVNPGFMKRMRTGRPFVRVKLAASLDGRTALANGQSKWITGPEARADVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH-----------QPYRIVIDSYLRIDPFFRV 228
RA S A++TG +VL DNP +NVR + H QP R+V+D R+ P ++
Sbjct: 187 RAISDAVITGADSVLADNPSMNVRHAELGHWQSRISEADLQQPLRVVVDGKARLAPPLKL 246
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLP---NNLGKVDLQAVIIELGKRKINELHI 285
L G + + R V V P N GKV L A++ ELG+++INE+ +
Sbjct: 247 LDSDGPLMLASL-----RGYDCHWPASVSVWPAADNGEGKVALTALLDELGRQQINEVLV 301
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG L A I G DEL LY +P L+G EA + LP ++ + L +++++G
Sbjct: 302 EAGSALAGAFISAGLWDELWLYQAPKLMGSEARGLLALPGVDTMAEVPSLTIQDVRRVGA 361
Query: 345 DIRIL 349
D+R++
Sbjct: 362 DLRLI 366
>gi|157159935|ref|YP_001457253.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli HS]
gi|419353393|ref|ZP_13894679.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC13C]
gi|419358737|ref|ZP_13899968.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC13D]
gi|419363651|ref|ZP_13904833.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC13E]
gi|157065615|gb|ABV04870.1| riboflavin biosynthesis protein RibD [Escherichia coli HS]
gi|378208302|gb|EHX68686.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC13D]
gi|378209310|gb|EHX69684.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC13C]
gi|378219671|gb|EHX79938.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC13E]
Length = 367
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 214/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED ++ P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLTPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|417230354|ref|ZP_12031940.1| riboflavin biosynthesis protein RibD [Escherichia coli 5.0959]
gi|386206844|gb|EII11350.1| riboflavin biosynthesis protein RibD [Escherichia coli 5.0959]
Length = 367
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|392535112|ref|ZP_10282249.1| riboflavin biosynthesis protein [Pseudoalteromonas arctica A
37-1-2]
Length = 374
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 149/361 (41%), Positives = 219/361 (60%), Gaps = 16/361 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK +II G+ + G HAE++AL A G
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKNNQIIGEGFHQLAGQGHAEVNAL---AIAGNSA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L K+G+ KVI A+ D NP V+GKG+ L AGI V
Sbjct: 72 QGATAYVTLEPCSHYGRTPPCAEGLKKAGVVKVIAAMVDTNPQVAGKGLKILSDAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N+GFF RM++G+P+V K+A+S+D KT+L N S+WITS +R D ++
Sbjct: 132 YGLLESQARALNVGFFKRMEQGLPYVTCKMAASIDGKTALKNGQSKWITSPAARQDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTS---HQPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL D+ +LNVR ++ T QP R++IDS R+ P + K
Sbjct: 192 RAQSCAILTGADTVLVDDAKLNVRLSELPCTLPTDLPLRQPVRVIIDSQNRLTPNLALFK 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
G I T + + + H I + + GKVDLQAV+ +LG+ + N + +E+G
Sbjct: 252 IQGDVIIFTTKVDKSLQWPHFVKH--IEVSESNGKVDLQAVLEKLGQLQFNNVWLESGAT 309
Query: 291 LNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L + VDE + Y++P L+G +A ++ P S+ + L F+E +IG D+RI
Sbjct: 310 LAGKMTELDLVDEFVFYLAPKLMGHDAKSLVNFPELTSMQNTVDLTFNECARIGDDLRIT 369
Query: 350 A 350
A
Sbjct: 370 A 370
>gi|218693874|ref|YP_002401541.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 55989]
gi|407467860|ref|YP_006785698.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O104:H4 str. 2009EL-2071]
gi|407483409|ref|YP_006780558.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O104:H4 str. 2011C-3493]
gi|410483963|ref|YP_006771509.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O104:H4 str. 2009EL-2050]
gi|417153085|ref|ZP_11991876.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0497]
gi|417579634|ref|ZP_12230456.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_B2F1]
gi|417665496|ref|ZP_12315063.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_O31]
gi|417803766|ref|ZP_12450801.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O104:H4 str. LB226692]
gi|417831518|ref|ZP_12478040.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O104:H4 str. 01-09591]
gi|417867715|ref|ZP_12512750.1| hypothetical protein C22711_4641 [Escherichia coli O104:H4 str.
C227-11]
gi|422991127|ref|ZP_16981898.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
C227-11]
gi|422993066|ref|ZP_16983830.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
C236-11]
gi|422998277|ref|ZP_16989033.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
09-7901]
gi|423006738|ref|ZP_16997481.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
04-8351]
gi|423008381|ref|ZP_16999119.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-3677]
gi|423022568|ref|ZP_17013271.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4404]
gi|423027722|ref|ZP_17018415.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4522]
gi|423033559|ref|ZP_17024243.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4623]
gi|423036425|ref|ZP_17027099.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423041545|ref|ZP_17032212.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423048231|ref|ZP_17038888.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423051815|ref|ZP_17040623.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423058780|ref|ZP_17047576.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4632 C5]
gi|429722607|ref|ZP_19257505.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429774704|ref|ZP_19306707.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02030]
gi|429779967|ref|ZP_19311920.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02033-1]
gi|429784019|ref|ZP_19315932.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02092]
gi|429789357|ref|ZP_19321232.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02093]
gi|429795587|ref|ZP_19327413.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02281]
gi|429801513|ref|ZP_19333291.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02318]
gi|429805145|ref|ZP_19336892.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02913]
gi|429809956|ref|ZP_19341658.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-03439]
gi|429815716|ref|ZP_19347375.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-04080]
gi|429821304|ref|ZP_19352917.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-03943]
gi|429906978|ref|ZP_19372947.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429911176|ref|ZP_19377132.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429917012|ref|ZP_19382952.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429922050|ref|ZP_19387971.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429927868|ref|ZP_19393774.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429931800|ref|ZP_19397695.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429933402|ref|ZP_19399292.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429939056|ref|ZP_19404930.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429946699|ref|ZP_19412554.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949331|ref|ZP_19415179.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429957615|ref|ZP_19423444.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec12-0466]
gi|218350606|emb|CAU96298.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli 55989]
gi|340735670|gb|EGR64726.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O104:H4 str. 01-09591]
gi|340741475|gb|EGR75621.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O104:H4 str. LB226692]
gi|341921004|gb|EGT70608.1| hypothetical protein C22711_4641 [Escherichia coli O104:H4 str.
C227-11]
gi|345344054|gb|EGW76430.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_B2F1]
gi|354858237|gb|EHF18688.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
04-8351]
gi|354860113|gb|EHF20560.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
C227-11]
gi|354866809|gb|EHF27232.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
C236-11]
gi|354877145|gb|EHF37505.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
09-7901]
gi|354879452|gb|EHF39790.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4404]
gi|354884039|gb|EHF44353.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-3677]
gi|354885840|gb|EHF46132.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4522]
gi|354888907|gb|EHF49161.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4623]
gi|354901508|gb|EHF61635.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354905739|gb|EHF65822.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354908246|gb|EHF68302.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354918718|gb|EHF78674.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354922406|gb|EHF82321.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-4632 C4]
gi|386169809|gb|EIH36317.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0497]
gi|397786893|gb|EJK97724.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_O31]
gi|406779125|gb|AFS58549.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O104:H4 str. 2009EL-2050]
gi|407055706|gb|AFS75757.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O104:H4 str. 2011C-3493]
gi|407063895|gb|AFS84942.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O104:H4 str. 2009EL-2071]
gi|429351520|gb|EKY88240.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02030]
gi|429352223|gb|EKY88939.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02033-1]
gi|429352981|gb|EKY89690.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02092]
gi|429366894|gb|EKZ03495.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02093]
gi|429367805|gb|EKZ04397.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02281]
gi|429370300|gb|EKZ06866.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02318]
gi|429382687|gb|EKZ19151.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-02913]
gi|429384920|gb|EKZ21374.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-03943]
gi|429385443|gb|EKZ21896.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-03439]
gi|429397136|gb|EKZ33483.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
11-04080]
gi|429399364|gb|EKZ35685.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429399672|gb|EKZ35992.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429410426|gb|EKZ46648.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429412326|gb|EKZ48523.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429419311|gb|EKZ55449.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429427870|gb|EKZ63950.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429434714|gb|EKZ70738.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429435538|gb|EKZ71556.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429440079|gb|EKZ76058.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429444679|gb|EKZ80624.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429450984|gb|EKZ86876.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429456476|gb|EKZ92321.1| riboflavin biosynthesis protein RibD [Escherichia coli O104:H4 str.
Ec11-9941]
Length = 367
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|238791408|ref|ZP_04635046.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
intermedia ATCC 29909]
gi|238729024|gb|EEQ20540.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
intermedia ATCC 29909]
Length = 369
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 220/365 (60%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L + PNP VGCV+V++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTPPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 65 RGATAYVTLEPCSHHGCTPPCADALVAAGVIRVVAAMQDPNPQVAGRGLYKLKQAGIAVD 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +A +N+GF RM+ G P++++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMLAQAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK------------TSHQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR + + QP RI++DS+ R+ P +
Sbjct: 185 RAESSAILSTSATVLADDPSLTVRWSELDAQTQALYPQDSLRQPVRIILDSHNRVTPEHQ 244
Query: 228 VLKGGGSCIFT---ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
V + G C A P + E ++LP + G VDL ++++LGKR+IN +
Sbjct: 245 VTQQNGLCWLARVEADQQPWPDNV------EQLLLPRHGGGVDLVLLMMQLGKRQINSVW 298
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG QL AL+ G VDEL+LYI+P L+G +A + L L + + F +++++G
Sbjct: 299 VEAGPQLAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTHLSQAPEFVFSDVRQVG 358
Query: 344 PDIRI 348
PD+R+
Sbjct: 359 PDLRL 363
>gi|354598786|ref|ZP_09016803.1| riboflavin biosynthesis protein RibD [Brenneria sp. EniD312]
gi|353676721|gb|EHD22754.1| riboflavin biosynthesis protein RibD [Brenneria sp. EniD312]
Length = 383
Score = 270 bits (691), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 142/364 (39%), Positives = 221/364 (60%), Gaps = 24/364 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ ++ GY G HAE+ AL A G
Sbjct: 17 MARALELARRGRFTTAPNPNVGCVIVRDGEVVGEGYHFRAGEPHAEVHALRMA---GERA 73
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL +G+ +V++A+ DPNP V+G+G+ +L AGI+V
Sbjct: 74 RGATAYVTLEPCSHHGRTPPCADALAAAGVSRVVVAMQDPNPQVAGRGLHRLQQAGIAVS 133
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 134 HGLMTAEAEKLNRGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSAQARQDVQRF 193
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP R+++D R+ P R
Sbjct: 194 RAQSAAILSSGATVLADDPSLTVRWRELDADTQRNYAAADVRQPVRVIVDGRRRVTPQHR 253
Query: 228 VLKGGGSCIF--TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
++ G T +D +R E + + + LP + G +DL A+++ LGKR+IN + +
Sbjct: 254 IIAQPGQTWLAHTGSD---ERTWPETV--KQLSLPQHAGGIDLVALMMVLGKRQINSVWV 308
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG L AL+ G VDEL++Y++P L+G+ A + LP L + + + ++++IGP
Sbjct: 309 EAGATLAGALLKAGVVDELIVYLAPKLLGDNARGLCVLPGLNRLSQAPEFEISDVRQIGP 368
Query: 345 DIRI 348
D+R+
Sbjct: 369 DLRL 372
>gi|312171548|emb|CBX79806.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Erwinia amylovora ATCC BAA-2158]
Length = 367
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 214/365 (58%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCV+V++ +I+ GY G HAE+ AL A G
Sbjct: 7 MARALELARRGRFTTTPNPNVGCVLVRDDQIVGEGYHMRAGEPHAEVHALRMA---GEKS 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+K+V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCEALIAAGVKRVVTAMQDPNPQVAGRGLYRLQQAGIEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M EA +N GF RM+ G PWV++K+ +SLD +T++ + SQWITS E+R D
Sbjct: 124 HGMMMPEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS------------IKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL DNP L VR + QP R+++DS R+ P R
Sbjct: 184 RAQSSAILSTSATVLADNPALTVRHDELDRASLADYPVDLLRQPVRVIVDSQNRVTPRHR 243
Query: 228 VLKGGGSCIFTAT---DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
++ G T DL + + + +P ++DL A+++ LG+++IN L
Sbjct: 244 LISQPGETWLARTAGDDLDWPDNVSQ------LTVPRYQDRLDLVAMLMLLGRKQINSLW 297
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG Q AL+ G VDEL++Y++P L+G+A + LP L F +I+++G
Sbjct: 298 VEAGAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLEMLASVPVFTFSDIRQVG 357
Query: 344 PDIRI 348
PDIR+
Sbjct: 358 PDIRL 362
>gi|187734040|ref|YP_001879123.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella boydii CDC 3083-94]
gi|421681114|ref|ZP_16120944.1| riboflavin biosynthesis protein RibD [Shigella flexneri 1485-80]
gi|187431032|gb|ACD10306.1| riboflavin biosynthesis protein RibD [Shigella boydii CDC 3083-94]
gi|404341862|gb|EJZ68264.1| riboflavin biosynthesis protein RibD [Shigella flexneri 1485-80]
Length = 367
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|349575170|ref|ZP_08887091.1| riboflavin biosynthesis protein RibD [Neisseria shayeganii 871]
gi|348013178|gb|EGY52101.1| riboflavin biosynthesis protein RibD [Neisseria shayeganii 871]
Length = 370
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 155/361 (42%), Positives = 218/361 (60%), Gaps = 24/361 (6%)
Query: 2 TLAL-QQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
LAL +Q + S +SPNPRVGCVI +II G+ G HAE+ AL A G
Sbjct: 17 ALALAEQGRFS--TSPNPRVGCVIALGGQIIGQGFHLRAGEPHAEVHALRQA---GSAAR 71
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
+T Y+TLEPC++ G TPPC ALI++G+ +V+ A+ DPNPLV+GKG+A L AGI V
Sbjct: 72 GATAYVTLEPCAHHGRTPPCAAALIQAGVARVVAAMRDPNPLVAGKGLAMLREAGIQVAC 131
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
GL + EA E+N GF SR++RG P+V++K A+SLD KT+L + SQWIT +R + R
Sbjct: 132 GLYEAEARELNRGFLSRIERGRPFVKLKTAASLDGKTALADGRSQWITGPAARQNVQTLR 191
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGG-GSCIFTA 239
A SCA+LTG+GTVL DNPRLNVRS T QP RIV+DS LR +++ G + I TA
Sbjct: 192 AESCAVLTGVGTVLADNPRLNVRSFPTLRQPLRIVLDSRLRTPVHSHLIQDGQATLILTA 251
Query: 240 TD-------LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLN 292
+ P R L L + V P+ L A++ L ++ I EL +EAG+ L+
Sbjct: 252 AEDDGRFAAFPAVR--LHRLPTDADVRPS------LPALLAYLAEQGIGELMLEAGHTLH 303
Query: 293 TALILEGCVDELLLYISPILIGE-AYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDIRILA 350
TA + VDE++ Y +P ++G A +F LP + L + + + ++ +G DI+ +
Sbjct: 304 TAFLAADLVDEIVCYQAPKILGHSARGLFGLPENPDVLSRAPQWQTRSVEMLGDDIKWVL 363
Query: 351 R 351
R
Sbjct: 364 R 364
>gi|386708213|ref|YP_006171934.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli W]
gi|383403905|gb|AFH10148.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli W]
Length = 361
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVLPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 238 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 289
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 290 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 349
Query: 342 IGPDI 346
+GPD+
Sbjct: 350 VGPDV 354
>gi|50120065|ref|YP_049232.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Pectobacterium atrosepticum SCRI1043]
gi|49610591|emb|CAG74036.1| riboflavin biosynthesis protein [Pectobacterium atrosepticum
SCRI1043]
Length = 369
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 220/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 8 MARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHFRAGEPHAEVHALRMA---GERA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALITAGVSRVVAAMQDPNPQVAGRGLHRLQQAGITVS 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMMAEAEKVNVGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR S QP R+++DS R+ P R
Sbjct: 185 RAESAAILSSSTTVLADDPSLTVRWSELDADVQKHYSEADLRQPVRVIVDSQQRVTPQHR 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G ++ +++ H ++LP + G VDL A+++ LG+R+IN + +EA
Sbjct: 245 IISQPGETWLARVQAD-EQAWPQNVEH--LMLPQHNGGVDLVALMMVLGRRQINSVWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ VDEL++Y++P L+GE A ++ LP L + + E++++GPD+
Sbjct: 302 GASLAGALLNACVVDELIVYLAPKLLGENARSLCLLPGLTQLSQAPEFDIVEVRQVGPDL 361
Query: 347 RI 348
R+
Sbjct: 362 RL 363
>gi|424817283|ref|ZP_18242434.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia fergusonii ECD227]
gi|325498303|gb|EGC96162.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia fergusonii ECD227]
Length = 367
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RSLLIPEHNGHLDLVLLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L KF+EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPHFKFNEIRHVGPDV 360
>gi|94677040|ref|YP_589028.1| riboflavin biosynthesis protein RibD [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
gi|94220190|gb|ABF14349.1| riboflavin biosynthesis protein RibD [Baumannia cicadellinicola
str. Hc (Homalodisca coagulata)]
Length = 378
Score = 270 bits (690), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 152/364 (41%), Positives = 227/364 (62%), Gaps = 20/364 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
+ LA + A+ + ++PNP VGCVI+++ R++ GY G HAEI AL A A Y
Sbjct: 8 LALAFKLARRGKLTTAPNPNVGCVIIRDHRVVGEGYHVRAGEPHAEIHALRMAGAMAY-- 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T YITLEPC+++G+TPPCTEALI +GI +V+ A+ DPNP V+G+G+ +L A I V+
Sbjct: 66 -GATAYITLEPCNHYGHTPPCTEALIAAGISRVVAAMLDPNPKVNGRGLYRLQQANIEVR 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+M ++A IN GF RM+ G+PW+R+K+A+SLD +T++ + S WITS ++R D +
Sbjct: 125 HSIMLQDAEMINKGFLKRMRTGLPWIRVKLATSLDGRTAMASGESSWITSNQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSI------------KTSHQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL DNP LNVR + + QP +++IDS R++PF R
Sbjct: 185 RAESDAILSTSATVLADNPTLNVRWLSLPADIQCLCKEENIRQPIKVIIDSANRVNPFHR 244
Query: 228 VLKGGGSCIFT--ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
++K G+ D + + +E + V+ + L ++DL A++I LGKR IN + +
Sbjct: 245 IIKSNGTTWLARIQPDDKIWPRWVEQIQLPVLSRQDIL-RIDLMALMILLGKRHINSVWV 303
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG L +L+L G VDEL+LY+SP L+G+ A + LP L + K I+++GP
Sbjct: 304 EAGANLAGSLLLAGLVDELILYMSPKLLGDKARPLCLLPGLERLSDALNCKLLNIRQVGP 363
Query: 345 DIRI 348
DIRI
Sbjct: 364 DIRI 367
>gi|254236945|ref|ZP_04930268.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
C3719]
gi|126168876|gb|EAZ54387.1| riboflavin-specific deaminase/reductase [Pseudomonas aeruginosa
C3719]
Length = 373
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 134/363 (36%), Positives = 214/363 (58%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+VK+ +++ G+ G HAE+ AL A G +
Sbjct: 9 MARALELARQGLYSTHPNPRVGCVLVKDGQVVGEGWHVRAGEPHAEVHALRQA---GENA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L+ AGI+V+
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVGAGVARVVAAMQDPNPEVAGRGLLRLMQAGIAVQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 126 SGVLEAEARELNIGFIKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPSARSAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRL-----------NVRSIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+ T+L D+ RL + ++ + QP R+++D LR+ P
Sbjct: 186 RARSSVVLSRADTLLADDARLKRTARRTGPNAELTALAAARQPLRVLVDGRLRV-PLESA 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
G + R+ +D GHE++ LP+ G VDL +++EL R NE+ +EAG
Sbjct: 245 FYQAGPALVATCAAASARERFQDAGHELLALPSAEGHVDLHKLLLELAARGANEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE L+++P +G + P + +L+ +I+ +G D +
Sbjct: 305 PRLAGAFARLGLVDEYRLFVAPKFLGSSARPLLDWPLARMADAAQLRIDDIRAVGDDWLV 364
Query: 349 LAR 351
AR
Sbjct: 365 TAR 367
>gi|218549926|ref|YP_002383717.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia fergusonii ATCC 35469]
gi|218357467|emb|CAQ90106.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia fergusonii ATCC 35469]
Length = 367
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIATGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RSLLIPEHNGHLDLVLLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L KF+EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPHFKFNEIRHVGPDV 360
>gi|194364355|ref|YP_002026965.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia
R551-3]
gi|194347159|gb|ACF50282.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia
R551-3]
Length = 361
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 146/354 (41%), Positives = 215/354 (60%), Gaps = 9/354 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVI +R++ G+ + GG HAE+ AL A G +
Sbjct: 13 MANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALREA---GSEA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V+ A+ DP P V G G L +AGI V
Sbjct: 70 RGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRNAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GLM +A E+N GF SR++R PW+R+K+A+SLD +T++ + SS+WIT +R D W
Sbjct: 130 EGLMAAQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAREDVQHW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-HQPYRIVIDSYLRIDPFFRVLKGGGSCIFT 238
RAR+ AILTG TVL D+P L VR T P R+V+DS LR RV +GG ++
Sbjct: 190 RARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECSRVREGGAPTLYL 249
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
+ E +P+ G++DL AV+ L +R INE+H EAG L AL+
Sbjct: 250 HAAAVSAPDAAD---AEFASVPSADGRLDLGAVLALLAERGINEVHTEAGATLAGALLRG 306
Query: 299 GCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G VDELLLY +P L+G+ + ++D++ +L+ + +++G DIR+L R
Sbjct: 307 GWVDELLLYQAPTLLGDNGRPLLAGLGIDAMDQQRRLRVVDQRQVGEDIRLLLR 360
>gi|156935037|ref|YP_001438953.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Cronobacter sakazakii ATCC BAA-894]
gi|156533291|gb|ABU78117.1| hypothetical protein ESA_02888 [Cronobacter sakazakii ATCC BAA-894]
Length = 367
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 146/350 (41%), Positives = 210/350 (60%), Gaps = 19/350 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNPRVGCVIVKE I+ G+ GG HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPRVGCVIVKEGVIVGEGFHLRAGGPHAEVHALRMA---GDKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA +N
Sbjct: 76 SHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMSEAEALN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D RA S AILT
Sbjct: 136 KGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAESHAILTTSA 195
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + QP RIV+D ++ P +++ G + A
Sbjct: 196 TVLADDPSMTVRWDELGEETQAVYPRENLRQPLRIVLDRQNQVTPAHKIVNQPGET-WLA 254
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P E G E + P + GK+DL ++++LGKR++N L +EAG QL AL+ G
Sbjct: 255 RACPDDTVWPE--GVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEAGPQLAGALLQAG 312
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDEL++Y++P L+G EA +F LP L +L+F + +IGPD+R+
Sbjct: 313 LVDELIVYMAPKLLGSEARGLFALPGLERLADAPRLEFRDAVQIGPDLRL 362
>gi|431929797|ref|YP_007242843.1| riboflavin biosynthesis protein RibD [Thioflavicoccus mobilis 8321]
gi|431828100|gb|AGA89213.1| riboflavin biosynthesis protein RibD [Thioflavicoccus mobilis 8321]
Length = 375
Score = 270 bits (690), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 226/365 (61%), Gaps = 17/365 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNPRVGCV+V++ ++ G+ + GG HAE AL A G
Sbjct: 9 MARALRLAERGRYTTDPNPRVGCVLVRDGTVVGEGWHQRAGGPHAERVALAEA---GGRA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ ++TLEPC++ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V+
Sbjct: 66 RGAVAFVTLEPCAHHGRTPPCADALIAAGVARVVAAMVDPNPRVAGRGLKRLREAGIAVE 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N GF R + G+P+ R+K+A+SLD +T++ + S+WITS+ +R D
Sbjct: 126 GGLLEAQAAALNPGFIKRQREGLPFCRVKLAASLDGRTAMASGESRWITSEAARADVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPFFRVLK 230
RA + AI+TG GT+L D+P LNVR + QP R+V+DS LR P +L
Sbjct: 186 RAGASAIVTGSGTLLADDPSLNVRLAPEALGLAPGEAVRQPLRVVVDSQLRTPPTAGLLD 245
Query: 231 GGGSCIFTAT-DLPMKRKILEDLGHEVIVLPNNLG--KVDLQAVIIELGKRKINELHIEA 287
G + T + P +R LE G EV+V P +VDL A+ EL +R++NE+ IEA
Sbjct: 246 LPGVTLIACTVEEPARRAALEAAGAEVLVCPTRREGPRVDLHALFGELARREVNEVLIEA 305
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L A + G VDEL+LY++P L+G+ A +F LP + ++ L+ ++++IGPD+
Sbjct: 306 GPTLAGAALQAGLVDELILYLAPHLMGDAARGLFRLPGLERMADRVALEILDVRRIGPDL 365
Query: 347 RILAR 351
R+ AR
Sbjct: 366 RLTAR 370
>gi|410641971|ref|ZP_11352489.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
chathamensis S18K6]
gi|410138288|dbj|GAC10676.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
chathamensis S18K6]
Length = 372
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 146/371 (39%), Positives = 220/371 (59%), Gaps = 30/371 (8%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M LA++ A K +SPNP VGCVI K I+ G+ + G HAEI A+ A G
Sbjct: 12 MALAIRLAEKGQYTTSPNPNVGCVITDPKGNIVGQGWHQKAGTPHAEIHAIAQA---GER 68
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPC++ G T PC+EALIK+G+ +V+ A+ DPNPLV+G G+ +L AG++V
Sbjct: 69 TKGATAYVTLEPCNHHGRTGPCSEALIKAGVSRVVAAMVDPNPLVAGSGLQKLSDAGVAV 128
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
GL+++EA +N+GF RM+ GIPWV +K+ASSLD KT+L N SQWIT +R D
Sbjct: 129 SSGLLEREAKALNLGFIKRMKTGIPWVTVKLASSLDGKTALNNGESQWITGPLAREDVQR 188
Query: 179 WRARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+SCAIL+G GTVL DNP LNVR S + QP RI++D ++ P
Sbjct: 189 HRAKSCAILSGSGTVLADNPSLNVRYSELGNVKSELSEENLRQPVRILLDGRNQMRPDLH 248
Query: 228 VLKGGGSCIF-----TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINE 282
+ + D P + + L +N ++DLQ V+ LG+R N+
Sbjct: 249 LFSLSSPIVIINSQPNTADFPAHVEQYQAL--------SNGAQLDLQDVMKHLGQRGFNQ 300
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG +L AL+ +DEL+LY +P L+G+ ++F + + + +L++ ++++
Sbjct: 301 IWVEAGAKLAGALLQNKLIDELILYQAPKLLGDKGRDLFAVDELTQMQQAFELQWQDVRQ 360
Query: 342 IGPDIRILARF 352
+GPD+++ AR
Sbjct: 361 VGPDLKLTARL 371
>gi|307312211|ref|ZP_07591847.1| riboflavin biosynthesis protein RibD [Escherichia coli W]
gi|378714182|ref|YP_005279075.1| riboflavin biosynthesis protein RibD [Escherichia coli KO11FL]
gi|386607774|ref|YP_006123260.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Escherichia coli W]
gi|422763205|ref|ZP_16816960.1| riboflavin biosynthesis protein RibD [Escherichia coli E1167]
gi|306907713|gb|EFN38215.1| riboflavin biosynthesis protein RibD [Escherichia coli W]
gi|315059691|gb|ADT74018.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli W]
gi|323379743|gb|ADX52011.1| riboflavin biosynthesis protein RibD [Escherichia coli KO11FL]
gi|324116898|gb|EGC10811.1| riboflavin biosynthesis protein RibD [Escherichia coli E1167]
Length = 367
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVLPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|157156281|ref|YP_001461596.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli E24377A]
gi|157078311|gb|ABV18019.1| riboflavin biosynthesis protein RibD [Escherichia coli E24377A]
Length = 367
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSYAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVLPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|359451174|ref|ZP_09240585.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. BSi20480]
gi|358043028|dbj|GAA76834.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. BSi20480]
Length = 383
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 150/361 (41%), Positives = 214/361 (59%), Gaps = 16/361 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK+ +II G+ + G HAE++AL A G
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKDNQIIGEGFHQLAGQGHAEVNAL---AVAGEKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L +GIKKVI A+ D NP V+GKG+ L AGI V
Sbjct: 72 KGATAYVTLEPCSHYGRTPPCAEGLKAAGIKKVIAAMVDTNPQVAGKGLKILSDAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++EA +N GFF RM++G+P+V K+A+S+D KT+L N S+WIT +R D ++
Sbjct: 132 HGLLEQEARALNFGFFKRMEQGLPYVTCKLAASIDGKTALKNGKSKWITGPAARKDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH---------QPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL DN +LNVR+ + + QP R++IDS R+ P + K
Sbjct: 192 RAQSCAILTGADTVLVDNAKLNVRASELPYSLPTNLPLRQPVRVIIDSQNRLTPDLALFK 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
I T + + + H I + GKVDL V+ L K + N + +EAG
Sbjct: 252 IAHPVIIFTTKVDNSMQWPHFVKH--IAVREQQGKVDLTDVLQTLAKHQFNNIWLEAGAT 309
Query: 291 LNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L + +DE + YI+P L+G +A ++ LP S+ I L F+E +IG D+RI
Sbjct: 310 LAGKMTELDLIDEYVFYIAPKLMGYDAKSLVNLPELTSMQDTIDLSFNECVRIGDDLRIN 369
Query: 350 A 350
A
Sbjct: 370 A 370
>gi|416214548|ref|ZP_11622944.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M01-240013]
gi|325143820|gb|EGC66136.1| riboflavin biosynthesis protein RibD [Neisseria meningitidis
M01-240013]
Length = 370
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/328 (45%), Positives = 207/328 (63%), Gaps = 9/328 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++SPNPRVGCVI +I+ G+ G HAE+ AL A G
Sbjct: 10 MENALRLAALGRFSTSPNPRVGCVIAHGSQIVGQGFHVKAGEPHAEVHALHQA---GEMA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L AGI +
Sbjct: 67 QGATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLALLEVAGIKTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D +
Sbjct: 127 CGLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDTRADVQVL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + A
Sbjct: 187 RAESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIA 246
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + ++ + H I++P+ GK+DL ++ L E+ +EAG +L +A
Sbjct: 247 TLERNEDRLHPYREHAHIRILMPSETAGGKIDLHHLMRLLADEGFGEIMVEAGSELTSAF 306
Query: 296 ILEGCVDELLLYISP-ILIGEAYNMFTL 322
+ E DE++LY SP IL G +F L
Sbjct: 307 LAEDLADEIVLYRSPKILGGGGGGLFCL 334
>gi|430762138|ref|YP_007217995.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Thioalkalivibrio nitratireducens DSM 14787]
gi|430011762|gb|AGA34514.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Thioalkalivibrio nitratireducens DSM 14787]
Length = 384
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/375 (41%), Positives = 216/375 (57%), Gaps = 28/375 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A L + + PNPRVG V V++ II G G HAEI AL A G
Sbjct: 7 MARALQLAHLGLYTTDPNPRVGSVAVRDGAIIGEGVHWRAGEPHAEIHALR---AAGERA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +ALI +G+ +V+IA+ DPNP V+G+GV +L +AGI V+
Sbjct: 64 RGATVYVTLEPCSHHGRTPPCADALIAAGVARVVIAMQDPNPHVAGRGVERLRAAGIEVR 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RMQ G PWVR+K+ASSLD +T++ + S+WIT +R D W
Sbjct: 124 SGMLEFEARRLNPGFVRRMQSGRPWVRVKLASSLDGRTAMASGDSRWITGPAARRDVQHW 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--------------------SIKTSHQPYRIVIDSY 219
RAR+ AILTG GTVL D+PRL VR + P R+VIDS
Sbjct: 184 RARAGAILTGSGTVLADDPRLTVRLTPAELLADDGHAPDRYPELADAAPRHPPRVVIDSR 243
Query: 220 LRIDPFFRVLKGGGS-CIFTATDLPM--KRKILEDLGHEVIVLPN-NLGKVDLQAVIIEL 275
L+ R+ G +FT + K + L G EV P + G++DL AV+ +L
Sbjct: 244 LQTPRSARLFDDEGPVVVFTTAERAASDKARDLRLRGAEVEAAPERDDGQLDLGAVLDQL 303
Query: 276 GKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLK 335
G+R++NELH+EAG L AL G VDE LLY++P L+G P +D++ +L
Sbjct: 304 GEREVNELHVEAGAGLAGALARCGLVDEWLLYLAPCLMGSGARPLLDWPLQHMDERAELD 363
Query: 336 FHEIQKIGPDIRILA 350
++G +R+ A
Sbjct: 364 LFACDRVGDALRLRA 378
>gi|331681807|ref|ZP_08382440.1| riboflavin biosynthesis protein RibD [Escherichia coli H299]
gi|450185624|ref|ZP_21889186.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli SEPT362]
gi|331081009|gb|EGI52174.1| riboflavin biosynthesis protein RibD [Escherichia coli H299]
gi|449325068|gb|EMD14986.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli SEPT362]
Length = 367
Score = 270 bits (689), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARLDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + T+P L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTMPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|212555672|gb|ACJ28126.1| Riboflavin biosynthesis protein RibD [Shewanella piezotolerans WP3]
Length = 373
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 218/368 (59%), Gaps = 22/368 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+LA++ A+ + + PNP VG VIVK+ I+ GY GG HAE+ AL A G D
Sbjct: 10 MSLAIELAQKGLYTTRPNPCVGSVIVKDSVIVGEGYHIRAGGPHAEVYALNMA---GNDA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC +ALI++G+ +V++A+ DPNP VSG+G+A L AGI V
Sbjct: 67 KGATAYVTLEPCSHYGRTPPCAKALIEAGVSRVVVAVTDPNPQVSGRGIAMLQDAGIQVD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ A ++N+GF RMQ+G+PWV +K+A+SLD KT+L N S+WIT E+R D
Sbjct: 127 VGLLTDAAKQVNLGFLKRMQQGLPWVTVKLAASLDGKTALSNGESKWITGPEARRDVQRI 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-----------HQPYRIVIDSYLRIDPFFRV 228
RAR CA++TG+ TVL DNP LNVR + HQP R+++DS R+D +
Sbjct: 187 RARHCALITGVETVLADNPSLNVRHSELGSLSNEIAPAEVHQPLRVILDSQARLDAELAI 246
Query: 229 LKGGGSCIFTAT-DLP--MKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
+ +T D P +K + H+ VLP +V+LQA++ LGK N + +
Sbjct: 247 FSVTSPVLLVSTRDYPESVKSAWPAHVSHQ--VLPATDNRVELQALLTLLGK-TCNSVLV 303
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG L A + CVDE++LY + ++G ++ LP + + + + +K+G
Sbjct: 304 EAGATLAGAFVASHCVDEIILYQAMKILGAGGRDLLALPDFEKMSEIPNIDVIDERKVGK 363
Query: 345 DIRILARF 352
D R+ R
Sbjct: 364 DTRLTLRM 371
>gi|119472108|ref|ZP_01614339.1| Riboflavin biosynthesis protein [Alteromonadales bacterium TW-7]
gi|119445128|gb|EAW26421.1| Riboflavin biosynthesis protein [Alteromonadales bacterium TW-7]
Length = 383
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/361 (41%), Positives = 215/361 (59%), Gaps = 16/361 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK+ +II G+ + G HAE++AL A G
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKDNQIIGEGFHQLAGQGHAEVNAL---AVAGEKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L +GIKKVI A+ D NP V+GKG+ L AGI V
Sbjct: 72 QGATAYVTLEPCSHYGRTPPCAEGLKAAGIKKVIAAMVDTNPQVAGKGLKILSDAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++EA +N GFF RM++G+P+V K+A+S+D KT+L N S+WIT ++R D ++
Sbjct: 132 HGLLEQEARALNFGFFKRMEQGLPYVTCKLAASIDGKTALKNGKSKWITGPDARKDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTS---HQPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL DN +LNVR S+ T+ QP R++IDS R+ P + K
Sbjct: 192 RAQSCAILTGADTVLVDNAKLNVRPSELPYSLPTNLPLRQPVRVIIDSQNRLTPDLALFK 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
I T + + + H I + GKVDL V+ L K + N + +EAG
Sbjct: 252 IAHPVIIFTTKVDNSMQWPHFVKH--IAVREQQGKVDLTDVLQTLAKHQFNNIWLEAGAT 309
Query: 291 LNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L + +DE + YI+P L+G +A ++ P S+ I L F+E +IG D+RI
Sbjct: 310 LAGKMTELDLIDEYVFYIAPKLMGYDAKSLVNFPELTSMQDTIDLSFNECVRIGDDLRIN 369
Query: 350 A 350
A
Sbjct: 370 A 370
>gi|419373879|ref|ZP_13914935.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC14B]
gi|378226293|gb|EHX86480.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC14B]
Length = 367
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 214/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
R +S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RTQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|420334580|ref|ZP_14836202.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-315]
gi|420378671|ref|ZP_14878170.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 225-75]
gi|391268271|gb|EIQ27199.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-315]
gi|391306904|gb|EIQ64652.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 225-75]
Length = 361
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/360 (40%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHH 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + ++A
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVDA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|241759512|ref|ZP_04757616.1| riboflavin biosynthesis protein RibD [Neisseria flavescens SK114]
gi|241320294|gb|EER56627.1| riboflavin biosynthesis protein RibD [Neisseria flavescens SK114]
Length = 367
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 151/357 (42%), Positives = 221/357 (61%), Gaps = 9/357 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AKL ++SPNPRVGCVI +I+ G+ G HAE+ AL A A
Sbjct: 10 MQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQAGAA---A 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EAL+ SG+ +V+ A+ DPNPLV+GKG++ L +AGI +
Sbjct: 67 KGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVAGKGLSMLEAAGIRTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++RG P+VR+K A+SLD KT+L + S WIT + +R D I
Sbjct: 127 SGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAAREDVQIL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI--DPFFRVLKGGGSCIF 237
RA SCA+LTGIGTVL DNP+LNVRS T QP RIV+DS L+I D + I
Sbjct: 187 RAESCAVLTGIGTVLADNPKLNVRSFPTLRQPARIVLDSRLQIPLDCHLVTDTESPTVIV 246
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + + + L H I+ P+ G+++L +++ +L + E+ +EAG L +A
Sbjct: 247 TLSSDEQRLQALRTFEHIRIIRPSEHINGRINLLSLMPQLAEFGFGEVLVEAGSTLASAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDIRILAR 351
+ + VDE++LY +P L+G +F+L + + L + ++ IG DI+ + R
Sbjct: 307 LKDDLVDEIVLYQAPKLLGAGKPLFSLSENPAVLLSDSPWQSQSVEIIGQDIKWVLR 363
>gi|422023850|ref|ZP_16370352.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Providencia sneebia DSM 19967]
gi|414091865|gb|EKT53546.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Providencia sneebia DSM 19967]
Length = 375
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 219/369 (59%), Gaps = 23/369 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A++ +SPNP VGCVIV++ I+ GY + G HAE+ AL A G
Sbjct: 9 MARALELAQIGRFTTSPNPNVGCVIVRDDEIVGEGYHQKAGEPHAEVHALHMA---GDKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALIK+G+ +V+ A+ DPNP VSG+G+ L AGI +
Sbjct: 66 QGATAYVTLEPCSHHGRTPPCAEALIKAGVSRVVAAMQDPNPQVSGRGLYMLSKAGIETQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ ++A IN GF RM+ P+V++K+A+SLD KT+L + S+WITS +R D +
Sbjct: 126 SGVLMEQAEFINRGFLKRMRTAFPYVQLKLAASLDGKTALASGESKWITSAAARRDVQVL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA + AIL+ TVL D+P L VR +T QP RI++D + RI P +
Sbjct: 186 RAEASAILSTSSTVLADDPSLTVRWNELPLEIQAIYPEETVRQPIRIILDEHHRIKPEHK 245
Query: 228 VLKGGGSCIFTA----TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINEL 283
V + G C + T+L ++ D+ + +P + +DL ++++L KR +N +
Sbjct: 246 VTQQAGECWLVSSTPNTELELESIWKGDVKQ--LAIPADDNGIDLVILMMQLAKRNVNSI 303
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKI 342
+EAG +L +L+ G VDEL++YI+P L+G A + LP L K +F ++QK+
Sbjct: 304 WVEAGAKLAGSLLKLGIVDELIVYIAPKLLGNSALGLVDLPELAKLSDAPKFEFTDVQKV 363
Query: 343 GPDIRILAR 351
G D+R+ R
Sbjct: 364 GDDLRVRLR 372
>gi|300924134|ref|ZP_07140126.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 182-1]
gi|301330725|ref|ZP_07223327.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 78-1]
gi|422960298|ref|ZP_16971746.1| riboflavin biosynthesis protein RibD [Escherichia coli H494]
gi|450211032|ref|ZP_21894171.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O08]
gi|300419587|gb|EFK02898.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 182-1]
gi|300843386|gb|EFK71146.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 78-1]
gi|371594096|gb|EHN82968.1| riboflavin biosynthesis protein RibD [Escherichia coli H494]
gi|449322647|gb|EMD12630.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O08]
Length = 367
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVMPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|423118930|ref|ZP_17106614.1| riboflavin biosynthesis protein RibD [Klebsiella oxytoca 10-5246]
gi|376399576|gb|EHT12190.1| riboflavin biosynthesis protein RibD [Klebsiella oxytoca 10-5246]
Length = 367
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/360 (40%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L GI V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQEGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMGEAEALNKGFLKRMRTGFPYIQLKMGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR I+ + QP RIVIDS+ R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWEELDADIRACYPQENLRQPLRIVIDSHNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G +F T R E + +++P + G +DL ++++LGK+++N + +EA
Sbjct: 244 IVQQAGETLFARTQAD-DRSWPESV--RTLIVPEHNGHLDLVLLMMQLGKQQVNSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + LP L KF+EI+++GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRQVGPDL 360
>gi|332281560|ref|ZP_08393973.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shigella sp. D9]
gi|332103912|gb|EGJ07258.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shigella sp. D9]
Length = 367
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/360 (40%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGAIAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|350562343|ref|ZP_08931178.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349779576|gb|EGZ33919.1| riboflavin biosynthesis protein RibD [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 384
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 156/376 (41%), Positives = 216/376 (57%), Gaps = 30/376 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A++ + + PNPRVG V+V+ II G G HAEI AL A G
Sbjct: 7 MARALQLARVGLYTTDPNPRVGSVVVRAGEIIGEGTHWRAGEPHAEIHAL---HAAGERA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +ALI +G+ +V+IA+ DPNP V+G+G+ +L +AGI V+
Sbjct: 64 RGATVYVTLEPCSHHGRTPPCADALIAAGVARVVIAMQDPNPRVAGRGIERLRNAGIEVR 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RMQ G PWVR+K+ASSLD +T++ + S+WIT +R D W
Sbjct: 124 PGVLEFEARQLNPGFVRRMQSGRPWVRVKLASSLDGRTAMASGESRWITGPAARRDVQHW 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------------------SIKTSHQPYRIVIDS 218
RAR+ AILTG GTVL D+PRL VR + H P R+V+DS
Sbjct: 184 RARAGAILTGSGTVLADDPRLTVRLTPAELLADDGHAPNQTPELADVAPRHPP-RVVVDS 242
Query: 219 YLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDL---GHEVIVLPNNL-GKVDLQAVIIE 274
L+ R+L G GS + T DL G EV P G++DL AV+
Sbjct: 243 RLQTPRSARLLDGEGSVLVLTTAERAASDKARDLRLRGAEVEAAPEREDGQLDLGAVLER 302
Query: 275 LGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKL 334
LG+R++NELH+EAG L AL G VDE LLY++P L+G P + ++ +L
Sbjct: 303 LGEREVNELHVEAGAGLAGALARCGLVDEWLLYLAPCLMGSGARPLLDWPLQHMAERAEL 362
Query: 335 KFHEIQKIGPDIRILA 350
++G +R+ A
Sbjct: 363 DLFACDRVGDALRLRA 378
>gi|425303916|ref|ZP_18693705.1| riboflavin biosynthesis protein RibD [Escherichia coli N1]
gi|408232168|gb|EKI55419.1| riboflavin biosynthesis protein RibD [Escherichia coli N1]
Length = 367
Score = 269 bits (688), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 146/360 (40%), Positives = 215/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTFAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|388569672|ref|ZP_10156061.1| riboflavin biosynthesis protein RibD [Hydrogenophaga sp. PBC]
gi|388263095|gb|EIK88696.1| riboflavin biosynthesis protein RibD [Hydrogenophaga sp. PBC]
Length = 324
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 141/316 (44%), Positives = 202/316 (63%), Gaps = 14/316 (4%)
Query: 49 LLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGV 108
+ +A ++G + +T ++TLEPCS+ G TPPC +ALI + + +V++A DPNP V+G+G+
Sbjct: 1 MRDAQSRGESLIGATAHVTLEPCSHHGRTPPCCDALIAARVARVVVATTDPNPRVAGQGL 60
Query: 109 AQLISAGISVKQGLMQKE------AYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNN 162
+L +AGI V L+ + + E+NIGFFSRM RG PWVRMKIA+SLD T+L N
Sbjct: 61 ERLRAAGIQVD--LLPTDHPAAIRSRELNIGFFSRMIRGTPWVRMKIAASLDGITALPNG 118
Query: 163 SSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI 222
SQWIT + +R D H+WRAR+CA+LTG GTVL+D+PRL+ R + QP+ VIDS L
Sbjct: 119 QSQWITGEAAREDGHLWRARACAVLTGAGTVLEDDPRLDARLPGLARQPHLAVIDSRLDT 178
Query: 223 DPFFRVLK---GGGS---CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELG 276
P R+ + GG F A + L G + I++P GKVDL A + ELG
Sbjct: 179 PPTARLFEPPYGGLPRRLWFFHAEAGSPQADKLRQRGADTILMPGANGKVDLGATMRELG 238
Query: 277 KRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKF 336
+R++NELH+EAG +LN +L+ EG VDELL+Y++P L+G+ M P L L++
Sbjct: 239 RREVNELHVEAGAKLNASLLREGWVDELLVYLAPRLLGQGAGMAPFGPLERLADGTPLRW 298
Query: 337 HEIQKIGPDIRILARF 352
+ Q +G D+R+ AR
Sbjct: 299 LDTQALGTDLRLRARI 314
>gi|432459384|ref|ZP_19701548.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE204]
gi|433066621|ref|ZP_20253465.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE128]
gi|430992468|gb|ELD08839.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE204]
gi|431591156|gb|ELI62156.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE128]
Length = 367
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G V+EL++YI+P L+G +A + LP L ++ KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVNELIVYIAPKLLGSDARGLCILPGLEKLADALQFKFKEIRHVGPDV 360
>gi|386612608|ref|YP_006132274.1| riboflavin biosynthesis protein RibD [Escherichia coli UMNK88]
gi|332341777|gb|AEE55111.1| riboflavin biosynthesis protein RibD [Escherichia coli UMNK88]
Length = 367
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RSLLIPEHNGHLDLVLLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + +LP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|416273502|ref|ZP_11643417.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Shigella dysenteriae CDC 74-1112]
gi|320173768|gb|EFW48951.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Shigella dysenteriae CDC 74-1112]
Length = 367
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 146/360 (40%), Positives = 215/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + ++A
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVDA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIHHVGPDV 360
>gi|344206009|ref|YP_004791150.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia
JV3]
gi|343777371|gb|AEM49924.1| riboflavin biosynthesis protein RibD [Stenotrophomonas maltophilia
JV3]
Length = 361
Score = 269 bits (687), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/354 (41%), Positives = 216/354 (61%), Gaps = 9/354 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVI +R++ G+ + GG HAE+ AL A G +
Sbjct: 13 MANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALREA---GGEA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V+ A+ DP P V G G L +AGI V
Sbjct: 70 RGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRNAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GLM +A E+N GF SR++R PWVR+K+A+SLD +T++ + +S+WIT +R D W
Sbjct: 130 EGLMAVQARELNKGFLSRVERNRPWVRVKLAASLDGRTAMADGTSKWITGPAAREDVQHW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-HQPYRIVIDSYLRIDPFFRVLKGGGSCIFT 238
RAR+ AILTG TVL D+P L VR T P R+V+DS LR RV +GG ++
Sbjct: 190 RARAGAILTGADTVLADDPMLTVRLADTEVMPPLRVVLDSRLRSLECSRVREGGAPTLYL 249
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
D + D E +P G++DL AV+ L +R INE+H EAG L AL+
Sbjct: 250 -HDAAVSAPDAADA--EFASVPCVDGRLDLGAVLALLAERGINEVHTEAGATLAGALLRG 306
Query: 299 GCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G VDELLLY +P L+G+ + ++D++ +L+ + +++G DIR+L R
Sbjct: 307 GWVDELLLYQAPTLLGDNGRPLLAGLGIDAMDQQRRLRVVDQRQVGEDIRLLLR 360
>gi|331676081|ref|ZP_08376793.1| riboflavin biosynthesis protein RibD [Escherichia coli H591]
gi|331076139|gb|EGI47421.1| riboflavin biosynthesis protein RibD [Escherichia coli H591]
Length = 367
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 214/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILI-GEAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+ +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLDSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|359443746|ref|ZP_09233567.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. BSi20429]
gi|358034302|dbj|GAA69816.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. BSi20429]
Length = 374
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/361 (40%), Positives = 218/361 (60%), Gaps = 16/361 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK +II G+ + G HAE++AL A G
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKNNQIIGEGFHQLAGQGHAEVNAL---AIAGSSA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L K+G+ KVI A+ D NP V+GKG+ L AGI V
Sbjct: 72 QGATAYVTLEPCSHYGRTPPCAEGLKKAGVVKVIAAMVDTNPQVAGKGLKILSDAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N+GFF RM++G+P+V K+A+S+D KT+L N S+WITS +R D ++
Sbjct: 132 YGLLESQARALNVGFFKRMEQGLPYVTCKMAASIDGKTALKNGQSKWITSPAARQDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTS---HQPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL D+ +LNVR ++ T QP R++IDS R+ P + K
Sbjct: 192 RAQSCAILTGADTVLVDDAKLNVRLSELPCTLPTDLPLRQPVRVIIDSQNRLTPNLALFK 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
I T + + + H I + + GKVDLQAV+ +LG+ + N + +E+G
Sbjct: 252 IQSDVIIFTTKVDKSLQWPHFVKH--IEVSESNGKVDLQAVLEKLGQLQFNNVWLESGAT 309
Query: 291 LNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L + VDE + Y++P L+G +A ++ P S+ + L F+E +IG D+RI
Sbjct: 310 LAGKMTELDLVDEFVFYLAPKLMGHDAKSLVNFPELTSMQNTVDLTFNECARIGDDLRIT 369
Query: 350 A 350
A
Sbjct: 370 A 370
>gi|386717053|ref|YP_006183379.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Stenotrophomonas maltophilia D457]
gi|384076615|emb|CCH11198.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Stenotrophomonas maltophilia D457]
Length = 372
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/354 (40%), Positives = 215/354 (60%), Gaps = 9/354 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVI +R++ G+ + GG HAE+ AL A G +
Sbjct: 24 MANALRLAERAAYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALREA---GTEA 80
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V+ A+ DP P V G G L +AGI V
Sbjct: 81 RGATAYVTLEPCAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLRNAGIDVA 140
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GLM +A E+N GF SR++R PW+R+K+A+SLD +T++ + SS+WIT +R D W
Sbjct: 141 EGLMAVQARELNKGFLSRVERNRPWLRVKLAASLDGRTAMADGSSKWITGPAAREDVQHW 200
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-HQPYRIVIDSYLRIDPFFRVLKGGGSCIFT 238
RAR+ AILTG TVL D+P L VR T P R+V+DS LR RV +GG ++
Sbjct: 201 RARAGAILTGADTVLADDPMLTVRLADTEVMAPLRVVLDSRLRSLECSRVREGGAPTLYL 260
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
+ E +P+ G++DL AV+ L +R INE+H EAG L+ AL+
Sbjct: 261 HAAAVSAPDAAD---AEFASVPSAEGRLDLGAVLALLAERGINEVHTEAGATLSGALLRA 317
Query: 299 GCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G VDELLLY +P L+G+ + ++D++ +L+ + +++G D R+L R
Sbjct: 318 GWVDELLLYQAPTLLGDNGRPLLAGLGIDAMDQQRRLRVVDQRQVGEDNRLLLR 371
>gi|422804485|ref|ZP_16852917.1| riboflavin biosynthesis protein RibD [Escherichia fergusonii B253]
gi|324114633|gb|EGC08601.1| riboflavin biosynthesis protein RibD [Escherichia fergusonii B253]
Length = 367
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVYALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RSLLIPEHNGHLDLVLLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L KF+EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPHFKFNEIRHVGPDV 360
>gi|407801226|ref|ZP_11148070.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax sp. W11-5]
gi|407024663|gb|EKE36406.1| (S)-2-hydroxy-fatty-acid dehydrogenase [Alcanivorax sp. W11-5]
Length = 367
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 140/359 (38%), Positives = 210/359 (58%), Gaps = 19/359 (5%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL A+ ++++ PNPRVGCV+V+ I+ G+ + G HAE AL A G
Sbjct: 10 MSRALYLARRGLHTTDPNPRVGCVLVRNGMIVGEGWHQRAGEPHAERHALATA---GEQA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC +AL+++G+ +V+ A+ DPNP V+G+G+A+L AGI V+
Sbjct: 67 RGATCYVTLEPCSHTGRTGPCADALVEAGVARVVAAMQDPNPQVAGQGLARLRDAGIEVE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ A +N GF RM++G+PWVR+K+A S+D +T++ + SQWIT E+R D
Sbjct: 127 CGVLEDAARALNPGFIRRMEQGLPWVRVKLAMSVDGRTAMASGESQWITGAEAREDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPFFRVLK 230
RARS AI+TGIGTVL D P L VR QP R+V+D LR V++
Sbjct: 187 RARSSAIVTGIGTVLADAPSLTVRPATWQFSDYGPTPVRQPLRVVLDRALRTPADAAVIQ 246
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
G C+ L + G EV+ G + V+ EL R NE+ +EAG +
Sbjct: 247 ADGECLILTAQETSGAPALREAGAEVLA-----GDWSPRQVLAELAARGCNEVLVEAGAE 301
Query: 291 LNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L A + GCVDEL++Y++P+L+G A + LP + K L + +++G D+R+
Sbjct: 302 LAGAFVAAGCVDELVVYMAPMLLGSSARPLLALPGLDRMADKYLLTLRDTRQVGVDLRL 360
>gi|429122514|ref|ZP_19183091.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Cronobacter sakazakii 680]
gi|426322982|emb|CCK13828.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Cronobacter sakazakii 680]
Length = 367
Score = 268 bits (686), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 145/350 (41%), Positives = 210/350 (60%), Gaps = 19/350 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNPRVGCVIVKE I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPRVGCVIVKEGVIVGEGFHLRAGEPHAEVHALRMA---GDKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA +N
Sbjct: 76 SHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMSEAEALN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D RA S AILT
Sbjct: 136 KGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAESHAILTTSA 195
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + QP RIV+D ++ P +++ G + A
Sbjct: 196 TVLADDPSMTVRWDELGEETQAVYPRENLRQPLRIVLDRQNQVTPAHKIVNQPGET-WLA 254
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P E G E + P + GK+DL ++++LGKR++N L +EAG QL AL+ G
Sbjct: 255 RACPDDTVWPE--GVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEAGPQLAGALLQAG 312
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDEL++Y++P L+G EA +FTLP L +L+F + ++GPD+R+
Sbjct: 313 LVDELIVYMAPKLLGSEARGLFTLPGLERLADAPRLEFRDAVQVGPDLRL 362
>gi|386828978|ref|ZP_10116085.1| riboflavin biosynthesis protein RibD [Beggiatoa alba B18LD]
gi|386429862|gb|EIJ43690.1| riboflavin biosynthesis protein RibD [Beggiatoa alba B18LD]
Length = 373
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 225/367 (61%), Gaps = 21/367 (5%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAA--AQGY 57
M AL A+ + S+ PNPRVGCVIV++ I+ G+ + G HAEI AL A AQG
Sbjct: 9 MARALHLAERGLWSTDPNPRVGCVIVRDGEIVGEGWHEVAGEPHAEIYALQMAKEKAQG- 67
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+T Y+TLEPC + G TPPCT+ALIK+GI +V+ A DPNP+V+ KG+ QL AGI
Sbjct: 68 ----ATCYVTLEPCCHHGRTPPCTDALIKAGITRVVAASTDPNPIVASKGIEQLNKAGIV 123
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V G++ +A ++N GFF RM+R P++R K+A SLD +T++ + SQWITS+++R D
Sbjct: 124 VNVGVLGAQAEQLNAGFFMRMRRNRPYIRCKLAMSLDGRTAMASGESQWITSQDARRDVQ 183
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSI---------KTSHQPYRIVIDSYLRIDPFFRV 228
RARS A++TG GT+L DNPRL+VR K QP R ++D++L P +
Sbjct: 184 GLRARSSAVMTGAGTILADNPRLSVRESELPQHLYKPKIIRQPIRAIVDAHLSCMPPAHI 243
Query: 229 L-KGGGSCIFTATDLPMKRKILEDLGHEVIVLP-NNLGKVDLQAVIIELGKR-KINELHI 285
K + +FTA+ + +L + G V+ LP G +DLQ + L +NEL +
Sbjct: 244 FDKSSQTIVFTASRNETIKAMLTEAGAHVLSLPRGTTGDIDLQEMCYRLATDYHVNELLL 303
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
E G L+ +++ G +DE+++Y++P+L+G +A +F LP + +++ L +I+ +G
Sbjct: 304 ETGATLSGSMLKAGLIDEIVIYMAPVLMGNKARGLFNLPEIELMKQRLNLHITDIRAVGC 363
Query: 345 DIRILAR 351
D RI A+
Sbjct: 364 DWRITAQ 370
>gi|82542902|ref|YP_406849.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella boydii Sb227]
gi|416296109|ref|ZP_11651315.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Shigella flexneri CDC 796-83]
gi|417680553|ref|ZP_12329938.1| riboflavin biosynthesis protein RibD [Shigella boydii 3594-74]
gi|420324019|ref|ZP_14825805.1| riboflavin biosynthesis protein RibD [Shigella flexneri CCH060]
gi|420351182|ref|ZP_14852381.1| riboflavin biosynthesis protein RibD [Shigella boydii 4444-74]
gi|81244313|gb|ABB65021.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Shigella boydii Sb227]
gi|320186043|gb|EFW60788.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Shigella flexneri CDC 796-83]
gi|332098511|gb|EGJ03477.1| riboflavin biosynthesis protein RibD [Shigella boydii 3594-74]
gi|391256909|gb|EIQ16031.1| riboflavin biosynthesis protein RibD [Shigella flexneri CCH060]
gi|391289037|gb|EIQ47533.1| riboflavin biosynthesis protein RibD [Shigella boydii 4444-74]
Length = 367
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 215/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWGEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|225077298|ref|ZP_03720497.1| hypothetical protein NEIFLAOT_02357 [Neisseria flavescens
NRL30031/H210]
gi|224951442|gb|EEG32651.1| hypothetical protein NEIFLAOT_02357 [Neisseria flavescens
NRL30031/H210]
Length = 370
Score = 268 bits (685), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/327 (44%), Positives = 208/327 (63%), Gaps = 8/327 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AKL ++SPNPRVGCVI +I+ G+ G HAE+ AL A A
Sbjct: 10 MQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQAGAA---A 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EAL+ SG+ +V+ A+ DPNPLV+GKG++ L +AGI +
Sbjct: 67 KGATAYVTLEPCSHYGRTPPCAEALVHSGVTRVVAAMTDPNPLVAGKGLSMLEAAGIRTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++RG P+VR+K A+SLD KT+L + S WIT + +R D I
Sbjct: 127 SGLLEAQARELNRGFLSRIERGRPFVRLKCAASLDGKTALSDGRSFWITGEAARKDVQIL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI--DPFFRVLKGGGSCIF 237
RA SCA+LTGIGTVL DNP+LNVRS T QP RIV+DS L+I D + I
Sbjct: 187 RAESCAVLTGIGTVLADNPKLNVRSFPTLRQPARIVLDSRLQIPLDCHLVTDTESPTVIV 246
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + + + L H I+ P+ G+++L +++ +L + E+ +EAG L +A
Sbjct: 247 TLSSDEQRLQALSAFEHIRIIRPSEHINGRINLLSLMPQLAELGFGEVLVEAGSTLASAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTL 322
+ + VDE++LY +P L+G +F+L
Sbjct: 307 LKDDLVDEIVLYQAPKLLGAGKPLFSL 333
>gi|359433668|ref|ZP_09223989.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. BSi20652]
gi|357919682|dbj|GAA60238.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. BSi20652]
Length = 378
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 143/350 (40%), Positives = 211/350 (60%), Gaps = 15/350 (4%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++PNP VGCV+VK +II G+ + G HAE++AL A G + +T Y+TLEPC
Sbjct: 27 FTTTPNPNVGCVLVKNNQIIGEGFHQLAGQGHAEVNAL---AIAGNNAQGATAYVTLEPC 83
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E L +G+ KVI A+ D NP V+GKG+ L AGI V GL++ +A +N
Sbjct: 84 SHYGRTPPCAEGLKAAGVVKVIAAMVDTNPQVAGKGLKILSDAGIEVAYGLLESQARALN 143
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
+GFF RM++G+P+V K+A+S+D KT+L N S+WIT +R D ++RA+SCAILTG
Sbjct: 144 VGFFKRMEQGLPYVTCKMAASIDGKTALKNGQSKWITGSAARQDVQLYRAQSCAILTGAD 203
Query: 192 TVLKDNPRLNVR------SIKTS---HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDL 242
TVL D+ +LNVR ++ T QP R++IDS R+ P + K I T +
Sbjct: 204 TVLVDDAKLNVRLSELPCTLPTDLPLRQPVRVIIDSRNRLTPNLALFKIQSDIIIFTTKV 263
Query: 243 PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVD 302
+ + H I + + GK+DLQA + +LG+ + N + +EAG L +I +D
Sbjct: 264 DKSKHWPHFVKH--IEVSESNGKIDLQAALQKLGQLQFNNVWLEAGATLAGKMIELDLID 321
Query: 303 ELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
E + Y++P L+G +A ++ P S+ I L F E +IG D+RI AR
Sbjct: 322 EFVFYLAPKLMGHDAKSLVNFPELVSMQNTIDLTFDECARIGDDLRITAR 371
>gi|410647318|ref|ZP_11357753.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
agarilytica NO2]
gi|410133173|dbj|GAC06152.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
agarilytica NO2]
Length = 372
Score = 268 bits (684), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 145/371 (39%), Positives = 219/371 (59%), Gaps = 30/371 (8%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M LA++ A K +SPNP VGCVI K I+ G+ + G HAEI A+ A G
Sbjct: 12 MALAIRLAEKGQYTTSPNPNVGCVITDPKGNIVGQGWHQKAGTPHAEIHAIAQA---GER 68
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPC++ G T PC+EALIK+G+ +V+ A+ DPNPLV+G G+ +L AG++V
Sbjct: 69 TKGATAYVTLEPCNHHGRTGPCSEALIKAGVSRVVAAMVDPNPLVAGSGLQKLSDAGVAV 128
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
GL++ EA +N+GF RM+ G+PWV +K+ASSLD KT+L N SQWIT +R D
Sbjct: 129 SSGLLEHEAKALNLGFIKRMKTGMPWVTVKLASSLDGKTALNNGESQWITGPLAREDVQR 188
Query: 179 WRARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+SCAIL+G GTVL DNP LNVR + + QP RI++D ++ P
Sbjct: 189 HRAKSCAILSGSGTVLADNPSLNVRYSELGYVKSELTEENLRQPVRILLDGRNQMRPDLH 248
Query: 228 VLKGGGSCIF-----TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINE 282
+ + TD P + + L +N ++DL V+ LG+R N+
Sbjct: 249 LFSLSSPIVIINSQPNTTDFPAHVEQYQAL--------SNGAQLDLHDVMKHLGQRGFNQ 300
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQK 341
L +EAG +L AL+ +DEL+LY +P L+G+ ++F + + + +L++ ++++
Sbjct: 301 LWVEAGAKLAGALLQNKLIDELILYQAPKLLGDKGRDLFAVDELTQMQQAFQLQWQDVRQ 360
Query: 342 IGPDIRILARF 352
+GPD+++ AR
Sbjct: 361 VGPDLKLTARL 371
>gi|392539651|ref|ZP_10286788.1| riboflavin biosynthesis protein [Pseudoalteromonas marina mano4]
Length = 383
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 151/361 (41%), Positives = 213/361 (59%), Gaps = 16/361 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK+ +II G+ + G HAE++AL A G
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKDNQIIGEGFHQLAGQGHAEVNAL---AVAGEKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L +GIKKVI A+ D NP V+GKG+ L AGI V
Sbjct: 72 QGATAYVTLEPCSHYGRTPPCAEGLKAAGIKKVIAAMVDTNPQVAGKGLKILSDAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N GFF RM++G+P+V K+A+S+D KT+L N S+WIT +R D ++
Sbjct: 132 HGLLEHEARALNFGFFKRMEQGLPYVTCKLAASIDGKTALKNGKSKWITGPAARKDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTS---HQPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL DN +LNVR S+ T+ QP R++IDS R+ P + K
Sbjct: 192 RAQSCAILTGADTVLVDNAKLNVRPSELPYSLPTNLPLRQPVRVIIDSQNRLTPDLALFK 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
I T + + + H I + GKVDL V+ L K + N + +EAG
Sbjct: 252 IAHPVIIFTTKVDNSMQWPHFVKH--IAVREQQGKVDLTDVLQTLAKHQFNNIWLEAGAT 309
Query: 291 LNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L + +DE + YI+P L+G +A ++ P S+ I L F+E +IG D+RI
Sbjct: 310 LAGKMTELDLIDEYVFYIAPKLMGYDAKSLVNFPELTSMQDTIDLSFNECVRIGDDLRIN 369
Query: 350 A 350
A
Sbjct: 370 A 370
>gi|422640736|ref|ZP_16704162.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae Cit 7]
gi|440742672|ref|ZP_20921995.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae
BRIP39023]
gi|330953126|gb|EGH53386.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae Cit 7]
gi|440376976|gb|ELQ13633.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae
BRIP39023]
Length = 378
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 217/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV+E RI+ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHVRAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI++G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALIEAGVTRVVAAMQDPNPEVSGRGLLRLMNAGIGVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +L+G TVL D RL VR S+ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLSGADTVLADKARLTVRPDELGLDAELTSLAAARPPLRVLIDGRLRVPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 250 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 306 EAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|319639397|ref|ZP_07994147.1| riboflavin biosynthesis protein RibD [Neisseria mucosa C102]
gi|317399292|gb|EFV79963.1| riboflavin biosynthesis protein RibD [Neisseria mucosa C102]
Length = 367
Score = 268 bits (684), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 153/358 (42%), Positives = 220/358 (61%), Gaps = 11/358 (3%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AKL ++SPNPRVGCVI +I+ G+ G HAE+ AL A A
Sbjct: 10 MQTALELAKLGRFSTSPNPRVGCVIAHGAQIVGQGFHVKAGEPHAEVHALRQAQAA---A 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EALI SG+ +V+ ++ DPNPLV+GKG++ L +AGI +
Sbjct: 67 KGATAYVTLEPCSHYGRTPPCAEALIHSGVARVVASMTDPNPLVAGKGLSMLEAAGIRTE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A E+N GF SR++RG P++R+K A+SLD KT+L + S WIT + +R D I
Sbjct: 127 SGLLEAQARELNRGFLSRIERGRPFIRLKCAASLDGKTALSDGRSFWITGEAAREDVQIL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI--DPFFRVLKGGGSCIF 237
RA SCA+LTGIGTVL DNP+LNVRS T QP RIV+DS L+I D + I
Sbjct: 187 RAESCAVLTGIGTVLADNPKLNVRSFPTLRQPARIVLDSRLQIPLDCHLVTDTDSPTVIV 246
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
T + + + L H I+ P+ G+++L +++ +L + E+ EAG L +A
Sbjct: 247 TLSSDEKRLQALGKFEHIRIIRPSEHINGRINLPSLMPQLAELGFGEVLAEAGSTLVSAF 306
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLP--PHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+ + VDE++LY +P L+G +F+LP P L L ++ IG DI+ + R
Sbjct: 307 LKDDLVDEIVLYQAPKLLGAGKPLFSLPENPAALLSDGPWLS-QSVEIIGQDIKWVLR 363
>gi|359455293|ref|ZP_09244528.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. BSi20495]
gi|358047636|dbj|GAA80777.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. BSi20495]
Length = 601
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 218/361 (60%), Gaps = 16/361 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK +II G+ + G HAE++AL A G +
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKNNQIIGEGFHQLAGQGHAEVNAL---AIAGNNA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L K+G+ KVI A+ D NP V+GKG+ L AGI V
Sbjct: 72 QGATAYVTLEPCSHYGRTPPCAEGLKKAGVVKVIAAMVDTNPQVAGKGLKILSDAGIDVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N+GFF RM++G+P+V K+A+S+D KT+L N S+WITS +R D ++
Sbjct: 132 YGLLESQARALNVGFFKRMEQGLPYVTCKMAASIDGKTALKNGQSKWITSPAARQDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTS---HQPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL D+ +LNVR ++ T QP R++IDS R+ P + +
Sbjct: 192 RAKSCAILTGADTVLVDDAKLNVRLSELPCTLPTDLPLRQPVRVIIDSQNRLTPDLALFE 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
I + + + H I + + GKVDLQAV+ +LG+ + N + +EAG
Sbjct: 252 IQSDVIIFTIKVDKSLQWPHFVKH--IEVSESNGKVDLQAVLEKLGQLQFNNVWLEAGAT 309
Query: 291 LNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L + VDE + Y++P L+G +A ++ P S+ + L F+E +IG D+RI
Sbjct: 310 LAGKMTELNLVDEFVFYLAPKLMGHDAKSLVNFPELTSMQNTVDLTFNECARIGDDLRIT 369
Query: 350 A 350
A
Sbjct: 370 A 370
>gi|389841971|ref|YP_006344055.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Cronobacter sakazakii ES15]
gi|387852447|gb|AFK00545.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Cronobacter sakazakii ES15]
Length = 367
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/350 (41%), Positives = 210/350 (60%), Gaps = 19/350 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNPRVGCVIVKE I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPRVGCVIVKEGVIVGEGFHLRAGEPHAEVHALRMA---GDKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA +N
Sbjct: 76 SHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMSEAEALN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D RA S AILT
Sbjct: 136 KGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAESHAILTTSA 195
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + QP RIV+D ++ P +++ G I+ A
Sbjct: 196 TVLADDPSMTVRWDELGEETQAVYPRENLRQPLRIVLDRQNQVTPAHKIVNQPGE-IWLA 254
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P E G E + P + GK+DL ++++LGKR++N L +EAG QL AL+ G
Sbjct: 255 RACPDDTVWPE--GVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEAGPQLAGALLQAG 312
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDEL++Y++P L+G EA +F LP L +L+F + ++GPD+R+
Sbjct: 313 LVDELIVYMAPKLLGSEARGLFALPGLERLADAPRLEFRDAVQVGPDLRL 362
>gi|325266968|ref|ZP_08133639.1| riboflavin biosynthesis protein RibD [Kingella denitrificans ATCC
33394]
gi|324981709|gb|EGC17350.1| riboflavin biosynthesis protein RibD [Kingella denitrificans ATCC
33394]
Length = 369
Score = 267 bits (683), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 145/339 (42%), Positives = 207/339 (61%), Gaps = 7/339 (2%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++SPNPRVGCVI +I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 28 FSTSPNPRVGCVIAHGGQIVGQGFHVQAGFPHAEVHALRQA---GDLARGATAYVTLEPC 84
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC E LI +G+ +V+IA+ DPNPLV+GKG+A L +AGISV+ GL+ EA +N
Sbjct: 85 SHHGRTPPCAEGLIAAGVARVVIAMGDPNPLVAGKGIALLQAAGISVQCGLLADEARALN 144
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF SR++R P+V +KIA+SLD KT L + SQWIT +E+R D RA+SCA+LTG+G
Sbjct: 145 RGFLSRIERRRPFVSLKIAASLDGKTGLSDGRSQWITGEEARADVQRQRAQSCAVLTGVG 204
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGG-GSCIFTATDLPMKRKILE 250
TVL DNPRLNVR QP R+++DS LR +++ G + IFT P
Sbjct: 205 TVLHDNPRLNVRQFPIVRQPLRVILDSRLRTPESSHMIQDGQATQIFTLQKQPALFAAYP 264
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
++ N G++ L V+ L + I EL +EAG LN+A + + DE++ Y S
Sbjct: 265 NVSVRQCA-ANADGRIALPDVLARLAEDGIGELMVEAGCTLNSAFLQQNLADEIVYYQSA 323
Query: 311 ILIGE-AYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDIR 347
++G A F+LP + + L + + + ++Q +G DI+
Sbjct: 324 KILGSNAQAAFSLPENPAVLQQNAEWQTADVQILGNDIK 362
>gi|421725263|ref|ZP_16164459.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella oxytoca M5al]
gi|410373924|gb|EKP28609.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella oxytoca M5al]
Length = 367
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 145/352 (41%), Positives = 214/352 (60%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKAQGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L G+ V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGVDVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PW+++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWIQLKMGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + QP RIVIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWDGLNADTQALYPQENLRQPLRIVIDSRNRVTPQHRIVEQAGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F T +R+ E++ +++P + G++DL +++ LGK++IN + +EAG L AL
Sbjct: 252 LFARTR-EDERQWPENV--RTLLVPEHNGRLDLVVLMMLLGKQQINSIWVEAGSTLAGAL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G +A + LP L++ KF+EI+ +GPDI
Sbjct: 309 LEAGLVDELIVYIAPKLLGSDARGLCVLPGLEKLEQAPHFKFNEIRHVGPDI 360
>gi|386702783|ref|YP_006166620.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli KO11FL]
gi|383394310|gb|AFH19268.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli KO11FL]
Length = 361
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 214/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV + I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVIDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVLPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 238 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 289
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 290 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 349
Query: 342 IGPDI 346
+GPD+
Sbjct: 350 VGPDV 354
>gi|402843256|ref|ZP_10891658.1| riboflavin biosynthesis protein RibD [Klebsiella sp. OBRC7]
gi|402277887|gb|EJU26955.1| riboflavin biosynthesis protein RibD [Klebsiella sp. OBRC7]
Length = 361
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 145/352 (41%), Positives = 216/352 (61%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ +I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 9 ARGRFTTHPNPNVGCVIVKDGQIVGEGFHYRAGEPHAEVHALRMA---GEKAKGATAYVT 65
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L G+ V GLM EA
Sbjct: 66 LEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGVDVGHGLMMNEA 125
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PW+++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 126 EALNKGFLKRMRTGFPWIQLKMGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 185
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + + QP RIVIDS R+ P R+++ G
Sbjct: 186 TSSATVLADDPALTVRWDELNADTQALYPQENLRQPLRIVIDSQNRVTPQHRIVEQAGET 245
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F T +R+ E++ +++P + G++DL +++ LGK++IN + +EAG L AL
Sbjct: 246 LFARTRAD-ERQWPENV--RALLVPEHNGRLDLVVLMMLLGKQQINSIWVEAGPTLAGAL 302
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G +A + LP L++ KF+EI+ +GPDI
Sbjct: 303 LEAGLVDELIVYIAPKLLGSDARGLCVLPGLEKLEQAPHFKFNEIRHVGPDI 354
>gi|304413736|ref|ZP_07395180.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal) and 5-amino-6-(5-phosphoribosylamino)
uracil reductase (C-terminal) [Candidatus Regiella
insecticola LSR1]
gi|304283827|gb|EFL92221.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal) and 5-amino-6-(5-phosphoribosylamino)
uracil reductase (C-terminal) [Candidatus Regiella
insecticola LSR1]
Length = 381
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 153/366 (41%), Positives = 228/366 (62%), Gaps = 21/366 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++PNP VGCVIV+E +I+ GY G HAEI+AL A A+ +
Sbjct: 13 MARALELALLGRFTTAPNPNVGCVIVREGKIVGEGYHVRAGEPHAEINALNKAKAKD-EA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
N+TVY+TLEPC + G TPPCT+ALI +GIK+V++A+ DPNP VSG+G+ QL AGI V
Sbjct: 72 RNATVYVTLEPCCHTGRTPPCTDALIAAGIKRVVVAMPDPNPQVSGRGIYQLQQAGIVVD 131
Query: 120 ---QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDS 176
++ +A +IN GF RM+ P++++K+A+SLD +T++ + SQWITSKE+R D
Sbjct: 132 YIGSTTIKAKAEDINRGFLKRMRTRFPYLQLKMAASLDGRTAMASGESQWITSKEARQDV 191
Query: 177 HIWRARSCAILTGIGTVLKDNPRLNVR--SIKTS----------HQPYRIVIDSYLRIDP 224
+RA+S AIL+ T+L DNP L VR ++ TS QP RI+IDS R+ P
Sbjct: 192 QNFRAQSDAILSTSATILADNPALTVRHGALATSVQKIYPKHGLRQPTRIIIDSCNRVMP 251
Query: 225 FFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGK-VDLQAVIIELGKRKINEL 283
RV+ G+C+ + ++I D ++ + P+ K +DL+ ++EL +R+IN +
Sbjct: 252 CHRVITEPGACLL--ARMTADQQIWPDNIEQLFLPPSEEEKRIDLRLFMMELSRRQINSI 309
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKI 342
+EAG L AL+ G VDEL+LY++P L+G+ A + LP L++ E+ +I
Sbjct: 310 WVEAGATLAGALLQIGVVDELILYLAPKLLGDNARGLCVLPGIDKLNQAHNFTLQEVCQI 369
Query: 343 GPDIRI 348
G D+R+
Sbjct: 370 GSDLRL 375
>gi|375259310|ref|YP_005018480.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella oxytoca KCTC 1686]
gi|365908788|gb|AEX04241.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella oxytoca KCTC 1686]
Length = 367
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 145/352 (41%), Positives = 216/352 (61%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ +I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGQIVGEGFHYRAGEPHAEVHALRMA---GEKAKGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L G+ V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCEALIAAGVTRVVAAMQDPNPQVAGRGLYRLQKEGVDVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PW+++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWIQLKMGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + + QP RIVIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWDELNADTQALYPQENLRQPLRIVIDSQNRVTPQHRIVEQAGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F T +R+ E++ +++P + G++DL +++ LGK++IN + +EAG L AL
Sbjct: 252 LFARTRAD-ERQWPENV--RTLLVPEHNGRLDLVVLMMLLGKQQINSIWVEAGPTLAGAL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G +A + LP L++ KF+EI+ +GPDI
Sbjct: 309 LEAGLVDELIVYIAPKLLGSDARGLCVLPGLEKLEQAPHFKFNEIRHVGPDI 360
>gi|414071242|ref|ZP_11407214.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. Bsw20308]
gi|410806316|gb|EKS12310.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. Bsw20308]
Length = 377
Score = 267 bits (682), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 147/361 (40%), Positives = 218/361 (60%), Gaps = 16/361 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK +II G+ + G HAE++AL A G +
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKNNQIIGEGFHQLAGQGHAEVNAL---AVAGKNA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L +G+ KVI A+ D NP V+GKG+ L AGI V
Sbjct: 72 QGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDTNPQVAGKGLKILSDAGIDVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N+GFF RM++G+P+V K+A+S+D KT+L N S+WITS +R D ++
Sbjct: 132 YGLLESQARALNVGFFKRMEQGLPYVICKMAASIDGKTALKNGQSKWITSPAARQDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTS---HQPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL D+ +LNVR ++ T QP R++IDS R+ P + +
Sbjct: 192 RAKSCAILTGADTVLVDDAKLNVRLSELPCTLPTDLPLRQPVRVIIDSQNRLTPDLALFE 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
I T + + + H I + + GKVDLQAV+ +LG+ + N + +EAG
Sbjct: 252 IQSDVIIFTTKVDKSLQWPHFVKH--IEVSESNGKVDLQAVLEKLGQLQFNNVWLEAGAT 309
Query: 291 LNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L + VDE + Y++P L+G +A ++ P S+ + L F+E +IG D+RI
Sbjct: 310 LAGKMTELNLVDEFVFYLAPKLMGHDAKSLVNFPELTSMQNTVDLTFNECARIGDDLRIT 369
Query: 350 A 350
A
Sbjct: 370 A 370
>gi|330006909|ref|ZP_08305781.1| riboflavin biosynthesis protein RibD [Klebsiella sp. MS 92-3]
gi|328535663|gb|EGF62112.1| riboflavin biosynthesis protein RibD [Klebsiella sp. MS 92-3]
Length = 367
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 213/352 (60%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PWV++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + S QP R+VIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEHRIVQQAGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F A +R+ E +++P + G +DL +++ LGK++IN + +EAG L AL
Sbjct: 252 LF-ARLRADERQWPESA--RTLLVPEHNGHLDLVLLMMLLGKQQINSVWVEAGATLAGAL 308
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G A + LP L++ KF+EI+++GPD+
Sbjct: 309 LQAGLVDELIVYIAPKLLGNAARGLCALPGLEELNQAPHFKFNEIRQVGPDV 360
>gi|387131364|ref|YP_006294254.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methylophaga sp. JAM7]
gi|386272653|gb|AFJ03567.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Methylophaga sp. JAM7]
Length = 365
Score = 267 bits (682), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 150/348 (43%), Positives = 218/348 (62%), Gaps = 17/348 (4%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNPRVGCV+VK I++ G+ + G HAE AL A A + Y+TLEPC
Sbjct: 20 FTTDPNPRVGCVLVKNNEILAEGWHEIAGQPHAERHALAKAGAT---AKGADCYVTLEPC 76
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI++GI++V+IA+ DPNP V+GKG+A+L AGI V G++ ++A ++N
Sbjct: 77 SHVGRTPPCADALIEAGIRRVVIAMKDPNPKVAGKGIARLEKAGIDVICGVLSEQAAQLN 136
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM++G P+VR KIA SLD +T++ + S+WITS +SR D RARS A+LTGIG
Sbjct: 137 PGFIQRMEQGRPFVRSKIAMSLDGRTAMASGESKWITSLDSRRDVQKLRARSSAVLTGIG 196
Query: 192 TVLKDNPRLNVRS------IKTSHQPYRIVIDSYLRIDPFFRV-LKGGGSCIFTATDLPM 244
T+LKD+P L VR+ + QP R+V+DS LR ++ L G I TA
Sbjct: 197 TILKDDPLLTVRAEPDWYQSEYVRQPLRVVVDSQLRFPEQAKMRLDGNPLLIITA----- 251
Query: 245 KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDEL 304
+ I E E + + N G+VDL+A++ L KR++NE+ +EAG LN AL+ VDEL
Sbjct: 252 -KTISEQPTTETVHIANANGQVDLRALMHFLAKREMNEVMVEAGAILNGALLQARLVDEL 310
Query: 305 LLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+ Y++ L+G+ A F++P + + I L +++ IG D RI A+
Sbjct: 311 IFYVAAKLMGDNARGAFSVPGMLQMAQNIDLDITDMRAIGSDWRITAK 358
>gi|238897276|ref|YP_002922953.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase (C-terminal), partial [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465031|gb|ACQ66805.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase (C-terminal) [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 392
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 220/364 (60%), Gaps = 19/364 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A L ++PNP VGCV+V+ +++ GY G HAEI AL A G
Sbjct: 18 MSYALRLASLGRFTTTPNPNVGCVLVRHGQVVGEGYHLRLGEPHAEIHALQKA---GRLA 74
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
S YITLEPC ++G TPPC EALIK+G+++V++AI DPNP ++G+G+ QL AGI V
Sbjct: 75 KGSVAYITLEPCCHYGKTPPCVEALIKAGVRRVVVAIEDPNPEIAGRGLYQLKQAGIEVT 134
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ EA ++N GF RM+ G+P++++K+A SLD +T++ + SQWITS++SR D +
Sbjct: 135 SGILSTEAQDLNPGFLKRMRTGLPYIQLKMACSLDGRTAMASGESQWITSEQSRQDVQFF 194
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TV DNP L VR ++ QP RI++D + ++ P +
Sbjct: 195 RAQSSAILSTGVTVSADNPALTVRWESLPKKTQALYPQESLRQPVRIILDRHHKVTPQHQ 254
Query: 228 VLKGGGSC--IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
V++ G+C I T TD +E I P+ +DL +++ L KR++N + +
Sbjct: 255 VVQQPGTCWLIRTKTDHQDWPNQVEQWIFSSIQWPDKKNAIDLGSLMTALAKREMNLIWV 314
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG +L L+ G VDEL+LY++P L+G A + LP L K + E++++GP
Sbjct: 315 EAGAELAGGLLEAGLVDELILYMAPKLLGNTARGLCQLPGLNELAKAPEFVLQEVKQMGP 374
Query: 345 DIRI 348
D+R+
Sbjct: 375 DLRL 378
>gi|254281521|ref|ZP_04956489.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
NOR51-B]
gi|219677724|gb|EED34073.1| riboflavin biosynthesis protein RibD [gamma proteobacterium
NOR51-B]
Length = 371
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 145/354 (40%), Positives = 211/354 (59%), Gaps = 23/354 (6%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
++PNP VGCV+V E ++I G+T+ GGNHAEI+AL +A A D +T Y+TLEPC++
Sbjct: 24 ATPNPHVGCVLVHEGKVIGEGFTQPAGGNHAEIEALEHATA---DPSGATAYVTLEPCAH 80
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
G T PC +ALI +G+ +V++A+ DP P V G+G+ +L +AGI V G++ +A ++ G
Sbjct: 81 TGRTGPCADALIDAGLTRVVVAVGDPYPAVDGRGIDRLRAAGIEVSVGVLAVQASDLMAG 140
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F RMQRG VR+K+A+SLD +T++ + SQWIT E+R+D RA SCAI+TGIGTV
Sbjct: 141 FLMRMQRGWGRVRLKMAASLDGRTAMASGESQWITGVEARSDVQRLRAESCAIVTGIGTV 200
Query: 194 LKDNPRLNVRSIKTS-----------HQPYRIVIDSYLRIDPFFRVLKGGG-SCIFTATD 241
L D+ L VRS S P R+V+DS R R+ G + I TA D
Sbjct: 201 LADDCALTVRSESLSLDEDARRRAVVKPPLRVVLDSAGRTPGDARITSTGAPTLIITAPD 260
Query: 242 LPMKRKILEDLGHEVIVLPNNL---GKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
+ D EV V N G++DL AV+++LG R INE+ +E G L A +
Sbjct: 261 VDAP-----DYAGEVEVASNATGHDGRLDLSAVLMQLGARGINEVLLEVGPTLAAAFLKA 315
Query: 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
G VDE++LY +P L+G+ L + + L++ ++ +G D+RI AR
Sbjct: 316 GLVDEVVLYQAPKLLGDTARPLAALSIDRLAEAVALEYQDVTPVGNDLRITARV 369
>gi|365138428|ref|ZP_09345113.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 4_1_44FAA]
gi|363655091|gb|EHL93961.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 4_1_44FAA]
Length = 367
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 213/352 (60%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PWV++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + S QP R+VIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEHRIVQQAGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F A +R+ E + +++P + G +DL +++ LGK++IN + +EAG L AL
Sbjct: 252 LF-ARLRADERQWPESV--RTLLVPEHNGHLDLVLLMMLLGKQQINSVWVEAGATLAGAL 308
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G A + LP L + KF+EI+++GPD+
Sbjct: 309 LQAGLVDELIVYIAPKLLGNTARGLCALPGLEELSQAPHFKFNEIRQVGPDV 360
>gi|429089327|ref|ZP_19152059.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Cronobacter universalis NCTC 9529]
gi|426509130|emb|CCK17171.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Cronobacter universalis NCTC 9529]
Length = 367
Score = 266 bits (681), Expect = 8e-69, Method: Compositional matrix adjust.
Identities = 144/350 (41%), Positives = 209/350 (59%), Gaps = 19/350 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNPRVGCVIVKE I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPRVGCVIVKEGVIVGEGFHLRAGEPHAEVHALRMA---GDKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA +N
Sbjct: 76 SHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMSEAEALN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D RA S AILT
Sbjct: 136 KGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAESHAILTTSA 195
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + QP RIV+D ++ P +++ G + A
Sbjct: 196 TVLADDPSMTVRWDELGEETQAVYPRENLRQPLRIVLDRQNQVTPAHKIVNQPGET-WLA 254
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P E G E + P + GK+DL ++++LGKR++N L +EAG QL AL+ G
Sbjct: 255 RACPDDTVWPE--GVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEAGPQLAGALLQAG 312
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDEL++Y++P L+G EA +F LP L +L+F + ++GPD+R+
Sbjct: 313 LVDELIVYMAPKLLGSEARGLFALPGLERLADAPRLEFRDAVQVGPDLRL 362
>gi|423101575|ref|ZP_17089277.1| riboflavin biosynthesis protein RibD [Klebsiella oxytoca 10-5242]
gi|376391363|gb|EHT04042.1| riboflavin biosynthesis protein RibD [Klebsiella oxytoca 10-5242]
Length = 367
Score = 266 bits (681), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 145/352 (41%), Positives = 216/352 (61%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ +I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGQIVGEGFHYRAGEPHAEVHALRMA---GEKAKGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L G+ V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGVDVGHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PW+++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWIQLKMGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + + QP RIVIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWDELNADTQALYPQENLRQPLRIVIDSQNRVTPQHRIVEQAGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F T +R+ E++ +++P + G++DL +++ LGK++IN + +EAG L AL
Sbjct: 252 LFARTRAD-ERQWPENV--RALLVPEHNGRLDLVVLMMLLGKQQINSIWVEAGPTLAGAL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G +A + LP L++ KF+EI+ +GPDI
Sbjct: 309 LEAGLVDELIVYIAPKLLGSDARGLCVLPGLEKLEQAPHFKFNEIRHVGPDI 360
>gi|167623139|ref|YP_001673433.1| riboflavin biosynthesis protein RibD [Shewanella halifaxensis
HAW-EB4]
gi|167353161|gb|ABZ75774.1| riboflavin biosynthesis protein RibD [Shewanella halifaxensis
HAW-EB4]
Length = 373
Score = 266 bits (681), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 147/366 (40%), Positives = 217/366 (59%), Gaps = 18/366 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+LA++ A+ + + PNP VG VIVK+ I+ GY GG HAE+ AL A G D
Sbjct: 10 MSLAIELAQKGMYTTRPNPSVGSVIVKDGEIVGEGYHIRAGGPHAEVYALNMA---GADA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC +ALI+ G+ +V+IA+ DPNP VSG+G+A L AGI V
Sbjct: 67 KGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDAGIRVD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +EA ++N+GF RM++G+PWV +K+A+SLD KT+L N S+WIT E+R+D
Sbjct: 127 VGLMTEEAKQVNLGFLKRMEKGLPWVTVKLAASLDGKTALSNGVSKWITGPEARSDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-----------HQPYRIVIDSYLRIDPFFRV 228
RAR CA++TG+ T+L D+P LNVR + HQP R+V+DS R+ +
Sbjct: 187 RARHCALVTGVETILADDPCLNVRHSELGSLAGQLAPAEIHQPLRVVLDSQARLGTELNL 246
Query: 229 LKGGGSCIFTAT-DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+ +T P + + VLP ++DLQA++ LGK N + +EA
Sbjct: 247 FNSASPILLVSTIAYPESIQAAWPAHVQSQVLPAVDARIDLQALLSLLGK-SCNTVLVEA 305
Query: 288 GYQLNTALILEGCVDELLLYIS-PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L A + +G VDE++LY + IL G+ N+ L ++ ++ + +K+G D
Sbjct: 306 GATLAGAFVNQGLVDEIVLYQAMKILGGQGRNLLALDDFQAMSDIPRINLIDERKVGKDT 365
Query: 347 RILARF 352
R+ R
Sbjct: 366 RLTLRV 371
>gi|238023203|ref|ZP_04603629.1| hypothetical protein GCWU000324_03130 [Kingella oralis ATCC 51147]
gi|237865586|gb|EEP66726.1| hypothetical protein GCWU000324_03130 [Kingella oralis ATCC 51147]
Length = 359
Score = 266 bits (681), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 150/351 (42%), Positives = 212/351 (60%), Gaps = 14/351 (3%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL A + ++SPNPRVGCVI +I+ GY G HAE+ AL A G
Sbjct: 12 MQLALALAWQGRFSTSPNPRVGCVIAHGSQIVGQGYHVQAGAPHAEVHALAQA---GALA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G TPPC EAL+++G+ +V+ A+ DPNPLV+GKG+A L AG
Sbjct: 69 RGATAYVTLEPCAHHGRTPPCAEALVRAGVSRVVAAMQDPNPLVAGKGLAILRQAGTQTA 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EA +N GF SR++R P+V++KIA+SLD KT+L N +SQWIT + +R D I
Sbjct: 129 SGLCEAEARALNRGFLSRIERQRPFVKLKIAASLDGKTALANGASQWITGEAARADVQIQ 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA SCA+LTGIGT+L DNP+LNVR I T QP RIV+D LR R+++ GG +
Sbjct: 189 RAESCAVLTGIGTILADNPQLNVR-IPTIRQPLRIVLDRQLRTPARSRIIQDGGETLIC- 246
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P + + P N DL +++ L + +I EL +EAG L TA I
Sbjct: 247 TQSPAN-PFADYPNVHIYRQPEN----DLSSLLAHLAREHQIGELMVEAGSTLATAFIQA 301
Query: 299 GCVDELLLYISPILIGE-AYNMFTLPPHY-SLDKKIKLKFHEIQKIGPDIR 347
DE++ Y +P ++G+ A +F LP + +L + K + ++ +G DI+
Sbjct: 302 DLADEIVYYQAPKILGDSARGLFRLPENENTLTRPSKWQTVSVEALGDDIK 352
>gi|424934828|ref|ZP_18353200.1| Bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
gi|407809015|gb|EKF80266.1| Bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae KpQ3]
Length = 367
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/357 (40%), Positives = 210/357 (58%), Gaps = 29/357 (8%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PWV++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + S QP R+VIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEHRIVQQAGET 251
Query: 236 IFT-----ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
+F A P + L ++P + G +DL +++ LGK++IN + +EAG
Sbjct: 252 LFARLRADARQWPESARTL--------LVPEHNGHLDLVLLMMLLGKQQINSVWVEAGAT 303
Query: 291 LNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
L AL+ G VDEL++YI+P L+G A + LP L + KF+EI+++GPD+
Sbjct: 304 LAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPDV 360
>gi|378977265|ref|YP_005225406.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|419973346|ref|ZP_14488771.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|419978529|ref|ZP_14493825.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|419983916|ref|ZP_14499065.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|419989967|ref|ZP_14504941.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|419995847|ref|ZP_14510652.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|420000758|ref|ZP_14515416.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|420007616|ref|ZP_14522109.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|420013319|ref|ZP_14527630.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|420018403|ref|ZP_14532600.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|420024495|ref|ZP_14538508.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|420030253|ref|ZP_14544080.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|420035356|ref|ZP_14549020.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|420041690|ref|ZP_14555186.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|420047752|ref|ZP_14561068.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|420053453|ref|ZP_14566631.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|420058296|ref|ZP_14571309.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|420064584|ref|ZP_14577393.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|420070329|ref|ZP_14582981.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|420076140|ref|ZP_14588613.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|420081887|ref|ZP_14594191.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|421908638|ref|ZP_16338473.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|421915630|ref|ZP_16345228.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|428939264|ref|ZP_19012377.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae VA360]
gi|364516676|gb|AEW59804.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397348818|gb|EJJ41916.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH1]
gi|397351600|gb|EJJ44683.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH2]
gi|397354967|gb|EJJ47993.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH4]
gi|397366831|gb|EJJ59446.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH6]
gi|397368488|gb|EJJ61094.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH5]
gi|397372973|gb|EJJ65445.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH7]
gi|397380268|gb|EJJ72453.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH9]
gi|397384317|gb|EJJ76437.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH8]
gi|397390360|gb|EJJ82270.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH10]
gi|397399110|gb|EJJ90767.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH11]
gi|397402074|gb|EJJ93686.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH12]
gi|397408092|gb|EJJ99468.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH14]
gi|397416592|gb|EJK07765.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH17]
gi|397418227|gb|EJK09386.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH16]
gi|397424238|gb|EJK15145.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH18]
gi|397433290|gb|EJK23940.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH20]
gi|397437337|gb|EJK27906.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH19]
gi|397441711|gb|EJK32077.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH21]
gi|397447651|gb|EJK37841.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH22]
gi|397452820|gb|EJK42886.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
KPNIH23]
gi|410117429|emb|CCM81098.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Klebsiella
pneumoniae subsp. pneumoniae ST258-K26BO]
gi|410122139|emb|CCM87853.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Klebsiella
pneumoniae subsp. pneumoniae ST258-K28BO]
gi|426304335|gb|EKV66482.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae VA360]
Length = 367
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/357 (40%), Positives = 210/357 (58%), Gaps = 29/357 (8%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PWV++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + S QP R+VIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEHRIVQQAGET 251
Query: 236 IFT-----ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
+F A P + L ++P + G +DL +++ LGK++IN + +EAG
Sbjct: 252 LFARLRADARQWPESARTL--------LVPEHNGHLDLVLLMMMLGKQQINSVWVEAGAT 303
Query: 291 LNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
L AL+ G VDEL++YI+P L+G A + LP L + KF+EI+++GPD+
Sbjct: 304 LAGALLQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPDV 360
>gi|152968939|ref|YP_001334048.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae MGH
78578]
gi|150953788|gb|ABR75818.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Klebsiella pneumoniae subsp. pneumoniae MGH 78578]
Length = 367
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/357 (40%), Positives = 210/357 (58%), Gaps = 29/357 (8%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PWV++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + S QP R+VIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEHRIVQQAGET 251
Query: 236 IFT-----ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
+F A P + L ++P + G +DL +++ LGK++IN + +EAG
Sbjct: 252 LFARLRADARQWPESARTL--------LVPEHNGHLDLVLLMMLLGKQQINSVWVEAGAT 303
Query: 291 LNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
L AL+ G VDEL++YI+P L+G A + LP L + KF+EI+++GPD+
Sbjct: 304 LAGALLQAGLVDELIVYIAPKLLGNTARGLCALPGLEELSQAPHFKFNEIRQVGPDV 360
>gi|238893351|ref|YP_002918085.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae subsp. pneumoniae
NTUH-K2044]
gi|262042437|ref|ZP_06015597.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|402782150|ref|YP_006637696.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|425078121|ref|ZP_18481224.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425080125|ref|ZP_18483222.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425088754|ref|ZP_18491847.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425090247|ref|ZP_18493332.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|428933373|ref|ZP_19006927.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae JHCK1]
gi|238545667|dbj|BAH62018.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044]
gi|259040212|gb|EEW41323.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|402543012|gb|AFQ67161.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Klebsiella
pneumoniae subsp. pneumoniae 1084]
gi|405591100|gb|EKB64613.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405601846|gb|EKB74999.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405607050|gb|EKB80020.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405613931|gb|EKB86652.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|426305394|gb|EKV67517.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae JHCK1]
Length = 367
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 212/352 (60%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PWV++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + S QP R+VIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEHRIVQQAGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F A +R+ E +++P + G +DL +++ LGK++IN + +EAG L AL
Sbjct: 252 LF-ARLRADERQWPESA--RTLLVPEHNGHLDLVLLMMLLGKQQINSVWVEAGATLAGAL 308
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G A + LP L + KF+EI+++GPD+
Sbjct: 309 LQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPDV 360
>gi|58583479|ref|YP_202495.1| bifunctional riboflavin-specific deaminase/5-amino-6-uracil
reductase [Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84625292|ref|YP_452664.1| riboflavin-specific deaminase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188575264|ref|YP_001912193.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|58428073|gb|AAW77110.1| riboflavin-specific deaminase; 5-amino-6-uracil reductase
[Xanthomonas oryzae pv. oryzae KACC 10331]
gi|84369232|dbj|BAE70390.1| riboflavin-specific deaminase [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|188519716|gb|ACD57661.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 369
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 140/352 (39%), Positives = 217/352 (61%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR---AAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIEAGVTRVVAAMADPFPQVNGGGFALLRDAGIEVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WIT ++R D W
Sbjct: 133 SGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARADVQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTVL D+P + VR P R+V+D+ LR + G ++
Sbjct: 193 RARAGAILTGAGTVLADDPSMTVRLGDDIACVPPLRVVLDAGLRTLACKNIRNGDAPTLY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
D + L+ G E LP ++G+ DL AV+ L +R INE+H+EAG L+ AL+
Sbjct: 253 LHGD-AVAATALD--GAECAALPLHVGRFDLSAVLALLAERGINEVHVEAGATLSGALLQ 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + ++ ++ +L+ +++++G D+R+
Sbjct: 310 AGLVDELLVYMAPVLLGDTARPLLAGLGIETMAQRYELQLRDVRQLGQDLRL 361
>gi|404378630|ref|ZP_10983719.1| riboflavin biosynthesis protein RibD [Simonsiella muelleri ATCC
29453]
gi|294483755|gb|EFG31439.1| riboflavin biosynthesis protein RibD [Simonsiella muelleri ATCC
29453]
Length = 363
Score = 266 bits (680), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/341 (41%), Positives = 216/341 (63%), Gaps = 12/341 (3%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAA--AQGYDVYNSTVYITLE 69
++SPNPRVGCVI ++I+ G+ G HAE+ AL A AQG +T Y+TLE
Sbjct: 25 FSTSPNPRVGCVIAHGEQIVGQGFHVKAGEPHAEVHALRQAGSLAQG-----ATAYVTLE 79
Query: 70 PCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYE 129
PC+++G TPPC E+L +SG+ +V+ A+ DPNPLV+GKG+A L +AG+ V+ GL++ +A E
Sbjct: 80 PCAHYGRTPPCAESLRESGVARVVAAMRDPNPLVAGKGLAILTAAGVLVECGLLEHKARE 139
Query: 130 INIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTG 189
+N GF SR++R P++ +K+A+S D KT+L + S+WIT + +R+D RA+SCAILTG
Sbjct: 140 LNRGFLSRIERKRPFISLKMAASFDGKTALSDGCSKWITGELARSDVQQLRAQSCAILTG 199
Query: 190 IGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG-SCIFTATDLPMKRKI 248
IGT+L DNP+LNVR T QP R+++DSY R+ +V++ G + +FT TD P
Sbjct: 200 IGTILADNPQLNVRQFNTLRQPIRVILDSYFRLPEKSQVVQDDGETWLFTLTDTPSWVAK 259
Query: 249 LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYI 308
E+L V P + +++L V L + + E+ +EAG L TA + VDE++ +
Sbjct: 260 YENL--RVFRQPEKIAQLNLHWVSEILAQNGVGEVLLEAGQTLATAFLQADLVDEIVYFQ 317
Query: 309 SPILIGE-AYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDIR 347
SP ++G A +F LP + + L K + + IG DI+
Sbjct: 318 SPKILGNTARGIFKLPENPTVLTKSPDWRTISVTSIGDDIK 358
>gi|380510433|ref|ZP_09853840.1| riboflavin biosynthesis protein RibD [Xanthomonas sacchari NCPPB
4393]
Length = 369
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 141/353 (39%), Positives = 217/353 (61%), Gaps = 12/353 (3%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ ++ G+ + GG HAE+ AL A G
Sbjct: 17 MAQALRLAERGAYTTRPNPMVGCVIVRDGAVVGEGFHQRAGGPHAEVFALRAA---GERA 73
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++ + +V+ A+ DP P V+G G A L AGI+V+
Sbjct: 74 RGATAYVTLEPCAHYGRTPPCALALIEAEVARVVAAMADPFPQVNGGGFALLREAGIAVQ 133
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLMQ +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WIT +R D W
Sbjct: 134 SGLMQAQARALNRGFLSRVERGRPWLRIKLGASLDGRTALASGESKWITGAAARQDVQHW 193
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTVL D+P L VR + + P R+V+D+ LR +V G ++
Sbjct: 194 RARAGAILTGAGTVLADDPALTVRLDAATEAMPPLRVVLDAQLRSLAQAKVRDGSAPTLY 253
Query: 238 TATDLPMKRKILEDLGHEVI-VLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
L + L H +P + G+ DL A + LG+R INE+ +EAG L+ AL+
Sbjct: 254 ----LHAPDCVPPTLDHATFAAVPLHDGRCDLHAALRLLGERGINEVQVEAGATLSGALL 309
Query: 297 LEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + ++ +++ L+ +I ++G D+R+
Sbjct: 310 RAGLVDELLVYMAPLLLGDTARPLLAGLGIETMAQRVPLQLADIVQLGQDLRL 362
>gi|429092484|ref|ZP_19155112.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Cronobacter dublinensis 1210]
gi|426742683|emb|CCJ81225.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Cronobacter dublinensis 1210]
Length = 367
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 143/354 (40%), Positives = 210/354 (59%), Gaps = 27/354 (7%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNPRVGCVIVK+ I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPRVGCVIVKDGAIVGEGFHLRAGEPHAEVHALRMA---GDRRRGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA +N
Sbjct: 76 SHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEALN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D RA S AILT
Sbjct: 136 KGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAESHAILTTSA 195
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + QP RIV+D ++ P R++ G
Sbjct: 196 TVLADDPSMTVRWDELGEDTQALYPRENLRQPLRIVLDRQNQVTPAHRIVNQPGETW--- 252
Query: 240 TDLPMKRKILED----LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+ R +D G E + P + GK+DL ++++LGKR++N L +EAG QL AL
Sbjct: 253 ----LARATPDDAVWPAGVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEAGPQLAGAL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+ G VDEL++Y++P L+G EA +F LP L +L+F ++ ++GPD+R+
Sbjct: 309 LHAGLVDELIVYMAPKLLGSEARGLFALPGLERLCDAPRLEFRDVVQVGPDLRL 362
>gi|319786233|ref|YP_004145708.1| riboflavin biosynthesis protein RibD [Pseudoxanthomonas suwonensis
11-1]
gi|317464745|gb|ADV26477.1| riboflavin biosynthesis protein RibD [Pseudoxanthomonas suwonensis
11-1]
Length = 365
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 147/359 (40%), Positives = 212/359 (59%), Gaps = 18/359 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A + + PNP VGCV+ K+ ++ G+ G HAE+ AL A G
Sbjct: 13 MARALQLAARGLYTARPNPVVGCVVAKDGAVVGEGWHPRAGEPHAEVFALREA---GERA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G TPPC EAL+++G+ +V+ A+ DP P V G G A+L +AGI+V
Sbjct: 70 RGATAYVTLEPCAHHGRTPPCAEALVQAGVARVVAAMRDPFPRVDGAGFARLQAAGIAVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM+ +A ++N GF SR RG PW+R+K+A+SLD +T++ + S+WIT + +R D W
Sbjct: 130 AGLMEGQARDLNRGFLSRFTRGRPWLRVKLAASLDGRTAMASGESKWITGEAARADVQRW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-SIKTSHQ-PYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RARS AILTG TVL D+P L VR T Q P R+V+DS LR RV G ++
Sbjct: 190 RARSGAILTGADTVLADDPALTVRLGDATPFQPPLRVVLDSRLRSLAMPRVRDGSAPTLY 249
Query: 238 ----TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNT 293
A P L E V+P G +DL++ + L R INE+ +EAG L
Sbjct: 250 LHGPDAVPPP-------GLDAEFAVVPTRDGHLDLESALRLLAGRDINEVQVEAGPALCG 302
Query: 294 ALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
AL+ G VDELLLY +P+++G+ A +F ++ ++++L+ E +G D R+L R
Sbjct: 303 ALLHAGLVDELLLYQAPLVLGDTARPLFAGLGIEAMAQRLRLELVEAAMVGDDRRLLLR 361
>gi|429083915|ref|ZP_19146941.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Cronobacter condimenti 1330]
gi|426547269|emb|CCJ72982.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Cronobacter condimenti 1330]
Length = 367
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 214/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
+TLA Q + PNPRVGCVIVK+ I+ G+ G HAE+ AL A G
Sbjct: 11 LTLASQG---RFTTHPNPRVGCVIVKDGTIVGEGFHYRAGEPHAEVHALRMA---GDKAR 64
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 65 GATAYVTLEPCSHHGRTPPCCDALINAGVTRVVAAMQDPNPQVAGRGLYRLQQAGIEVSH 124
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
GLM EA +N GF RM+ G P++++K+ +SLD +T++ N SQWITS ++R D R
Sbjct: 125 GLMMSEAEALNKGFLKRMRTGFPFIQLKLGASLDGRTAMANGESQWITSPQARQDVQRLR 184
Query: 181 ARSCAILTGIGTVLKDNPRLNVR--------SIKTSH----QPYRIVIDSYLRIDPFFRV 228
A S AILT TVL D+P + VR + H QP RIV+D ++ P ++
Sbjct: 185 AESHAILTTSATVLADDPSMTVRWDELDETTQAQYPHENLRQPLRIVLDRQNQVTPAHKI 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDL----GHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
G + R +D G E + P + GK+DL ++++LGKR++N +
Sbjct: 245 TNQPGETW-------LARACPDDTVWPQGVEQLPTPVHNGKLDLVLLMMQLGKRQVNSIW 297
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG L AL+ G VDEL++Y++P L+G EA +F LP L +L+F ++ ++G
Sbjct: 298 VEAGPHLAGALLQAGLVDELIVYMAPKLLGSEARGLFALPELAHLADAPRLEFRDVVQVG 357
Query: 344 PDIRI 348
PD+R+
Sbjct: 358 PDLRL 362
>gi|332534978|ref|ZP_08410796.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas haloplanktis ANT/505]
gi|332035596|gb|EGI72088.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas haloplanktis ANT/505]
Length = 377
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 216/361 (59%), Gaps = 16/361 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK +II G+ + G HAE++AL A G +
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKNNQIIGEGFHQLAGQGHAEVNAL---AVAGKNA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L +G+ KVI A+ D NP V+GKG+ L AGI V
Sbjct: 72 QGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDTNPQVAGKGLKILSDAGIDVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N+GFF RM++G+P+V K+A+S+D KT+L N S+WITS +R D ++
Sbjct: 132 YGLLESQARALNVGFFKRMEQGLPYVICKMAASIDGKTALKNGQSKWITSPAARQDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL D+ +LNVR + QP R++IDS R+ P + +
Sbjct: 192 RAKSCAILTGADTVLVDDAKLNVRLSELPCTPPTDLPLRQPVRVIIDSQNRLTPDLALFE 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
I T + + + H I + + GKVDLQAV+ +LG+ + N + +EAG
Sbjct: 252 IQSDVIIFTTKVDKSLQWPHFVKH--IEVSESNGKVDLQAVLEKLGQLQFNNVWLEAGAT 309
Query: 291 LNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L + VDE + Y++P L+G +A ++ P S+ + L F+E +IG D+RI
Sbjct: 310 LAGKMTELNLVDEFVFYLAPKLMGHDAKSLVNFPELTSMQNTVDLTFNECARIGDDLRIT 369
Query: 350 A 350
A
Sbjct: 370 A 370
>gi|400405004|ref|YP_006587863.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [secondary
endosymbiont of Ctenarytaina eucalypti]
gi|400363367|gb|AFP84435.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [secondary
endosymbiont of Ctenarytaina eucalypti]
Length = 375
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/352 (41%), Positives = 213/352 (60%), Gaps = 19/352 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
N++PNP VGCVIV + RI+ GY + G HAE+ AL A G +TVY++LEPC
Sbjct: 20 FNTAPNPNVGCVIVLDGRIVGEGYHQRAGEAHAEVYALHMA---GETARGATVYVSLEPC 76
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G T PC +ALI +G+ +V+ A+ DPNP V+G+G +L +AGI V+ LM EA +N
Sbjct: 77 SHHGRTRPCVDALIDAGVVRVVAAMLDPNPKVAGRGFCRLKNAGIEVRHSLMLSEAEAVN 136
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+PW+R+K+A+SLD +T++ + S+WITS E+R D WRA S AIL+
Sbjct: 137 PGFLKRMRTGLPWIRLKLAASLDGRTAMASGESKWITSPEARQDVQRWRAESDAILSTAA 196
Query: 192 TVLKDNPRLNVR-----------SIKTS-HQPYRIVIDSYLRIDPFFRVLKGGGSCIFT- 238
TV+ D+P L VR KT HQP R++IDS RI P R+ + G
Sbjct: 197 TVIADDPALTVRWQSLPKTVQDLCPKTQLHQPVRVIIDSANRITPSHRIAQEQGRTWLAR 256
Query: 239 -ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+ D + +E L + ++DL +++++LG+R+IN +EAG L+ AL+
Sbjct: 257 LSPDDRLWPASVEQLQLQSCK-KTGRSRLDLLSLMMQLGRRQINNAWVEAGADLSGALLS 315
Query: 298 EGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDEL+LY SP L+G +A +F LP L + + ++++IGPDIR+
Sbjct: 316 AGLVDELILYQSPQLLGSDARPLFLLPGMKKLFETPRFTLLDVRRIGPDIRM 367
>gi|397656292|ref|YP_006496994.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Klebsiella
oxytoca E718]
gi|394344901|gb|AFN31022.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Klebsiella
oxytoca E718]
Length = 367
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 145/352 (41%), Positives = 216/352 (61%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ +I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGQIVGEGFHYRAGEPHAEVHALRMA---GEKAKGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L G+ V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCEALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQEGVDVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PW+++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWIQLKMGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + + QP RIVIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWDELNADTQALYPQENLRQPLRIVIDSQNRVTPQHRIVEQVGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F T +R+ E++ +++P + G++DL +++ LGK++IN + +EAG L AL
Sbjct: 252 LFARTRAD-ERQWPENV--RTLLVPEHNGRLDLVVLMMLLGKQQINSIWVEAGPTLAGAL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G +A + LP L++ KF+EI+ +GPDI
Sbjct: 309 LEAGLVDELIVYIAPKLLGSDARGLCVLPGLEKLEQAPHFKFNEIRHVGPDI 360
>gi|448240785|ref|YP_007404838.1| riboflavin biosynthesis protein RibD [Serratia marcescens WW4]
gi|445211149|gb|AGE16819.1| riboflavin biosynthesis protein RibD [Serratia marcescens WW4]
Length = 369
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 218/365 (59%), Gaps = 20/365 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMA---GDKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AG+ V+
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALVAAGVTRVVAAMQDPNPQVAGRGLYKLQQAGVEVR 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P+V++K+ +SLD +T++ + SQWITS E+R D
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPEARQDVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP RI++DS RI P R
Sbjct: 185 RAQSAAILSTSATVLADDPSLTVRWDELDAETQRLYPRENLRQPLRILLDSQNRITPQHR 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G+ + A ++ +D+ E + P + G VDL +++ L KR++N + +EA
Sbjct: 245 VVQQPGAT-WLARLQADEQTWPQDV--EQFICPAHGGGVDLVVMMMLLAKRQVNSIWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL+LYI+P L+G+ + LP L + F +++++GPD+
Sbjct: 302 GASLAGALLQAGLVDELILYIAPKLLGDNGRGLCHLPGLERLADAPEFVFSDVRQVGPDL 361
Query: 347 RILAR 351
R+ R
Sbjct: 362 RLRLR 366
>gi|283834269|ref|ZP_06354010.1| riboflavin biosynthesis protein RibD [Citrobacter youngae ATCC
29220]
gi|291069791|gb|EFE07900.1| riboflavin biosynthesis protein RibD [Citrobacter youngae ATCC
29220]
Length = 367
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 143/357 (40%), Positives = 213/357 (59%), Gaps = 29/357 (8%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMA---GEKAQGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM E
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEV 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P+L VR S + S+ QP RIV+DS+ ++ P R+++ G
Sbjct: 192 TSSATVLADDPQLTVRWPELGESTQASYPQENLRQPIRIVLDSHNQVTPEHRIVQQPGET 251
Query: 236 IFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
T +D H I +P + G +DL ++++LGK++IN + +EAG
Sbjct: 252 WIVRTQ--------DDTRHWPESVRSIKVPEHNGHLDLVVLMMQLGKQQINSIWVEAGPT 303
Query: 291 LNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
L AL+ G VDEL++Y++P L+G +A + LP L KF+EI+++GPD+
Sbjct: 304 LAGALLQAGLVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRQVGPDV 360
>gi|15837552|ref|NP_298240.1| riboflavin-specific deaminase [Xylella fastidiosa 9a5c]
gi|9105878|gb|AAF83760.1|AE003934_2 riboflavin-specific deaminase [Xylella fastidiosa 9a5c]
Length = 364
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 210/343 (61%), Gaps = 10/343 (2%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNP VGCVIV++ ++ G+ + G HAE+ AL A G +T Y+TLEPC+
Sbjct: 25 TTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFAL---CAAGDRARGATAYVTLEPCA 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC ALI +G+++V+ A+ DP PLV+G GV L +AG++V+ GLM+ +A +N
Sbjct: 82 HLGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAAGVTVEHGLMEAQARALNR 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SR++RG PWVR+K+ SSLD +T+L + S+WIT + +R D WRAR+ AILTG GT
Sbjct: 142 GFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARADVQRWRARASAILTGAGT 201
Query: 193 VLKDNPRLNVRSIKTSHQ---PYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKIL 249
VL D+P L VR P R+V+DS LR +V G ++ + +L
Sbjct: 202 VLADDPALTVRLGGEEGAFLPPLRVVLDSRLRSLSCVKVRDGTAPTLYL-HGFGVTSPVL 260
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ + + +DL+AV+ LG+R INE+ +EAG L AL+ G VDELL+YI+
Sbjct: 261 QHVDFSEV--QQRDAGLDLEAVLRLLGERGINEVQVEAGATLCGALLHAGLVDELLIYIA 318
Query: 310 PILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
P+L+G+ A + +D+ I LK E+ ++G D+R+L R
Sbjct: 319 PLLLGDTARPLLAGLDIGRMDQCIGLKVLEVVQVGNDLRLLLR 361
>gi|237730390|ref|ZP_04560871.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp.
30_2]
gi|226905929|gb|EEH91847.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp.
30_2]
Length = 367
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 144/353 (40%), Positives = 215/353 (60%), Gaps = 21/353 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKAQGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM E
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEV 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKG-GGS 234
T TVL D+P+L VR S + S+ QP RIV+DS ++ P R+++ G +
Sbjct: 192 TSSATVLADDPQLTVRWSELGESTQASYPQEELRQPIRIVLDSQNQVTPAHRIVQQPGET 251
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
I D P R E + + +P + G +DL ++++LGK++IN + +EAG L A
Sbjct: 252 WIVRTEDDP--RSWPETV--RSLKVPEHNGHLDLVVLMMQLGKQQINSIWVEAGPTLAGA 307
Query: 295 LILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
L+ G VDEL++Y++P L+G +A + LP L KF+EI+++GPD+
Sbjct: 308 LLQAGLVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRQVGPDV 360
>gi|385787545|ref|YP_005818654.1| Riboflavin biosynthesis protein RibD [Erwinia sp. Ejp617]
gi|310766817|gb|ADP11767.1| Riboflavin biosynthesis protein RibD [Erwinia sp. Ejp617]
Length = 367
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 221/362 (61%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCV+V++ +I+ GY G HAE+ AL A G
Sbjct: 7 MARALELARRGRFTTTPNPNVGCVLVRDGQIVGEGYHMRAGEPHAEVHALRMA---GEKS 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +GIK+V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 LGATAYVTLEPCSHHGRTPPCCEALIAAGIKRVVTAMQDPNPQVAGRGLYRLQQAGIEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +EA +N GF RM+ G PWV++K+ +SLD +T++ + SQWITS E+R D
Sbjct: 124 HGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS------------IKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL DNP L VR + QP R+++D+ R+ P +R
Sbjct: 184 RAQSSAILSTSATVLADNPALTVRHDELDSASLADYPVDLLRQPVRVIVDAQNRVTPEYR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G + A +++ E++ ++ L N ++DL ++++ LGK++IN + +EA
Sbjct: 244 LIAQPGET-WLARSSGDRQQWPENVSQLIVPLYQN--RLDLVSLLMLLGKKQINSVWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G Q AL+ G VDEL++Y++P L+G+A + LP +L F +I+++GPDI
Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLETLAAAPAFTFSDIRQVGPDI 360
Query: 347 RI 348
R+
Sbjct: 361 RL 362
>gi|28199619|ref|NP_779933.1| riboflavin-specific deaminase [Xylella fastidiosa Temecula1]
gi|182682363|ref|YP_001830523.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa M23]
gi|386083698|ref|YP_005999980.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|417558673|ref|ZP_12209635.1| Pyrimidine reductase, riboflavin biosynthesis RibD [Xylella
fastidiosa EB92.1]
gi|28057734|gb|AAO29582.1| riboflavin-specific deaminase [Xylella fastidiosa Temecula1]
gi|182632473|gb|ACB93249.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa M23]
gi|307578645|gb|ADN62614.1| riboflavin biosynthesis protein RibD [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|338178753|gb|EGO81736.1| Pyrimidine reductase, riboflavin biosynthesis RibD [Xylella
fastidiosa EB92.1]
Length = 364
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 210/343 (61%), Gaps = 10/343 (2%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNP VGCVIV++ ++ G+ + G HAE+ AL A G +T Y+TLEPC+
Sbjct: 25 TTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFAL---CAAGDRARGATAYVTLEPCA 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC ALI +G+++V+ A+ DP PLV+G GV L +AG++V+ GLM+ +A +N
Sbjct: 82 HSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAAGVTVEHGLMEAQARALNR 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SR++RG PWVR+K+ SSLD +T+L + S+WIT + +R D WRAR+ AILTG GT
Sbjct: 142 GFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARADVQRWRARASAILTGAGT 201
Query: 193 VLKDNPRLNVRSIKTSHQ---PYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKIL 249
VL D+P L VR P R+V+DS LR +V G ++ + +L
Sbjct: 202 VLADDPALTVRLGGEEGAFLPPLRVVLDSSLRSLSCVKVRDGTAPTLYL-HGFGVTSPVL 260
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ + + +DL+AV+ LG+R INE+ +EAG L AL+ G VDELL+YI+
Sbjct: 261 QHVDFSEV--QQRDAGLDLEAVLRLLGERGINEVQVEAGATLCGALLHAGLVDELLIYIA 318
Query: 310 PILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
P+L+G+ A + +D+ I LK E+ ++G D+R+L R
Sbjct: 319 PLLLGDTARPLLAGLDIGRMDQCIGLKVLEVAQVGNDLRLLLR 361
>gi|332307440|ref|YP_004435291.1| riboflavin biosynthesis protein RibD [Glaciecola sp. 4H-3-7+YE-5]
gi|332174769|gb|AEE24023.1| riboflavin biosynthesis protein RibD [Glaciecola sp. 4H-3-7+YE-5]
Length = 372
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/371 (38%), Positives = 220/371 (59%), Gaps = 30/371 (8%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M LA++ A K +SPNP VGCV+ K I+ G+ + G HAEI A+ A G
Sbjct: 12 MALAIRLAEKGQYTTSPNPNVGCVLTDPKGNIVGQGWHQKAGTPHAEIHAIAQA---GER 68
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPC++ G T PC+EALIK+G+ +V+ A+ DPNPLV+G G+ +L AG++V
Sbjct: 69 TKGATAYVTLEPCNHHGRTGPCSEALIKAGVSRVVAAMVDPNPLVAGSGLQKLSDAGVAV 128
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
GL+++EA +N+GF RM+ G+PWV +K+ASSLD KT+L N SQWIT +R D
Sbjct: 129 SSGLLEREAKALNLGFIKRMKTGMPWVTVKLASSLDGKTALNNGESQWITGPLAREDVQR 188
Query: 179 WRARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+SCAIL+G GTVL DNP LNVR + ++ QP RI++D ++ P
Sbjct: 189 HRAKSCAILSGSGTVLADNPSLNVRYSELGFAKSELTEESLRQPGRILLDGRNQMRPDLH 248
Query: 228 VLKGGGSCIF-----TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINE 282
+ + D P + + L +N ++DL V+ LG+R N+
Sbjct: 249 LFSLSSPIVIINSQPNTADFPAHVEQYQAL--------SNGAQLDLHDVMKHLGQRGFNQ 300
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG +L AL+ +DEL+LY +P L+G+ ++F + + + +L++ ++++
Sbjct: 301 IWVEAGAKLAGALLQNKLIDELILYQAPKLLGDKGRDLFAVDELTQMQQAFELQWQDVRQ 360
Query: 342 IGPDIRILARF 352
+GPD+++ AR
Sbjct: 361 VGPDLKLTARL 371
>gi|384417824|ref|YP_005627184.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|353460738|gb|AEQ95017.1| riboflavin biosynthesis protein RibD [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 369
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 139/352 (39%), Positives = 217/352 (61%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR---AAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIEAGVTRVVAAMADPFPQVNGGGFALLRDAGIEVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WIT ++R D W
Sbjct: 133 SGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARADVQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTVL D+P + VR + P R+V+D+ LR + G ++
Sbjct: 193 RARAGAILTGAGTVLADDPSMTVRLGDDTACVPPLRVVLDAGLRTLACKNIRNGDAPTLY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
D + L+ G LP ++G+ DL AV+ L +R INE+H+EAG L+ AL+
Sbjct: 253 LHGD-AVAATALD--GAAYAALPLHVGRFDLSAVLALLAERDINEVHVEAGATLSGALLQ 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + ++ ++ +L+ +++++G D+R+
Sbjct: 310 AGLVDELLVYMAPVLLGDTARPLLAGLGIETMAQRYELQLRDVRQLGQDLRL 361
>gi|410091956|ref|ZP_11288500.1| riboflavin biosynthesis protein RibD [Pseudomonas viridiflava
UASWS0038]
gi|409760699|gb|EKN45823.1| riboflavin biosynthesis protein RibD [Pseudomonas viridiflava
UASWS0038]
Length = 378
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 215/365 (58%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV+E +I+ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYSTHPNPRVGCVIVREGQIVGEGWHALAGEPHAEVHALRQA---GEQA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ ++ DPNP V+G+G+ +L++AGI+V+
Sbjct: 70 RGATAYVTLEPCSHHGRTPPCADALVNAGVTRVVASMQDPNPEVAGRGLLRLMTAGIAVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLEAEARALNKGFIKRMETGQPYVRVKLAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARVPLRVLIDGRLRVPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
+ GS + R D GHE++ + ++ G VDL+ ++ ELG R +NE+ +
Sbjct: 250 LQA----GSALVATCAAASARGRYHDEGHEIVAMADSAGHVDLRKLLTELGTRGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + + ++L E++ +G D
Sbjct: 306 EAGPRLAGAFTRLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|386033419|ref|YP_005953332.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae KCTC 2242]
gi|424829224|ref|ZP_18253952.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|339760547|gb|AEJ96767.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae KCTC 2242]
gi|414706643|emb|CCN28347.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
Length = 367
Score = 265 bits (677), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/352 (41%), Positives = 212/352 (60%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L +GI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQSGIEVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PWV++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + S QP R+VIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEHRIVQQAGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F A +R+ E +++P + G +DL +++ LGK++IN + +EAG L AL
Sbjct: 252 LF-ARLRADERQWPESA--RTLLVPEHNGHLDLVLLMMLLGKQQINSVWVEAGATLAGAL 308
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G A + LP L + KF+EI+++GPD+
Sbjct: 309 LQAGLVDELIVYIAPKLLGNTARGLCALPGLEELSQAPHFKFNEIRQVGPDV 360
>gi|91792502|ref|YP_562153.1| riboflavin biosynthesis protein RibD [Shewanella denitrificans
OS217]
gi|91714504|gb|ABE54430.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shewanella denitrificans OS217]
Length = 378
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 150/365 (41%), Positives = 216/365 (59%), Gaps = 14/365 (3%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ ++ GY + G HAE++AL +
Sbjct: 12 MSRAIQLAERGRYTTRPNPCVGCVIVKDGIKLAEGYHQKAGFGHAEVNALAALKSANLSA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + L++SG+ KV++AI D NP V+GKG+A L AGI+V+
Sbjct: 72 IGATAYVTLEPCSHFGRTPPCAQTLVESGVAKVVVAITDANPQVAGKGIAMLREAGIAVE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+Q +A E+N+GF RM+ G+PWV +K+A+SLD KT+L N S+WIT SRND
Sbjct: 132 VGLLQAQALELNLGFMKRMRTGLPWVTVKLAASLDGKTALSNGVSKWITGDASRNDVQKL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----SIKTS------HQPYRIVIDSYLRIDPFFRV 228
RARSCA++TGI TVL D+P LNVR S+K HQP RIV+DS R+ R+
Sbjct: 192 RARSCALITGIETVLADDPSLNVRYQSLGSLKDELDVTELHQPVRIVLDSKARLTADKRL 251
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
I +T + I + P+N G+V L ++ LGK N++ IEAG
Sbjct: 252 FSITSPIILVSTQAYPETVIFPAHVQCLQFAPDNDGRVPLISLFHHLGK-SYNQVLIEAG 310
Query: 289 YQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
L ++ G DEL LY + ++G N+ LP + ++D L+ + +++G D R
Sbjct: 311 ATLAGKVLELGLGDELYLYQAMKILGSHGRNLVQLPDYQAMDDIPSLQLKDSRQLGEDRR 370
Query: 348 ILARF 352
+ R
Sbjct: 371 YIFRL 375
>gi|410626490|ref|ZP_11337251.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
mesophila KMM 241]
gi|410154029|dbj|GAC24020.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
mesophila KMM 241]
Length = 372
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 221/366 (60%), Gaps = 20/366 (5%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M LA++ A K +SPNP VGCVI+ + I+ G+ + G HAEI A+ A G
Sbjct: 12 MALAIRLAEKGQYTTSPNPNVGCVIIDAQGNIVGQGWHQKAGTPHAEIHAIAQA---GER 68
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPC++ G T PC+EAL+K+G+K+V+ A+ DPNPLV+G G+ +L AG++V
Sbjct: 69 TKGATAYVTLEPCNHHGRTGPCSEALLKAGVKRVVAAMVDPNPLVAGSGLQKLCDAGVAV 128
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
GL+++EA +N+GF RM+ G+PWV +K+ASSLD KT+L N SQWIT +R D
Sbjct: 129 SSGLLEREAMALNLGFIKRMKTGMPWVTVKLASSLDGKTALNNGESQWITGPLAREDVQR 188
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQ-----------PYRIVIDSYLRIDPFFR 227
RA+SCAIL+G GTVL DNP LNVR + P R+++D ++ P
Sbjct: 189 HRAQSCAILSGSGTVLADNPSLNVRYSELGFAKNEIAEVNLRLPVRVLLDGRNQMRPDLH 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+ S I P + + + E +N ++DL VI LG+R N++ +EA
Sbjct: 249 LFS-LSSPIVIINSQPNTAEFPDHV--EQYQAHSNGAQLDLHDVIKHLGERGFNQIWVEA 305
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G +L AL+ +DEL+LY +P L+G+ ++F + + + +L++ +++++GPD+
Sbjct: 306 GAKLAGALLQNKLIDELILYQAPKLLGDKGRDLFAVDELTQMQQAFELQWQDVRQVGPDL 365
Query: 347 RILARF 352
++ ARF
Sbjct: 366 KLTARF 371
>gi|288936867|ref|YP_003440926.1| riboflavin biosynthesis protein RibD [Klebsiella variicola At-22]
gi|290510077|ref|ZP_06549447.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 1_1_55]
gi|288891576|gb|ADC59894.1| riboflavin biosynthesis protein RibD [Klebsiella variicola At-22]
gi|289776793|gb|EFD84791.1| riboflavin biosynthesis protein RibD [Klebsiella sp. 1_1_55]
Length = 367
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 145/352 (41%), Positives = 212/352 (60%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKAQGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PWV++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + S QP R+VIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEHRIVQQAGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F A +R+ E + +++P G +DL +++ LGK+++N + +EAG L AL
Sbjct: 252 LF-ARLRADERQWPESV--RTLLVPEYNGHLDLVLLMMLLGKQQVNSVWVEAGATLAGAL 308
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G A + LP L + KF+EI+++GPD+
Sbjct: 309 LQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPDV 360
>gi|422296705|ref|ZP_16384370.1| riboflavin biosynthesis protein RibD [Pseudomonas avellanae BPIC
631]
gi|407992071|gb|EKG33775.1| riboflavin biosynthesis protein RibD [Pseudomonas avellanae BPIC
631]
Length = 378
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 219/365 (60%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A+ + S+ PNPRVGCVIV++ +I+ G+ G +HAE+ AL A G
Sbjct: 13 MAHAVELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGESHAEVHALREA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G G+ +L++AGISV+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGISVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLDTPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + T + + ED GHE++ L ++ G VDL+ ++ ELG R +NE+ +
Sbjct: 250 F---QAGSALVVTCAAASARGRYQED-GHEMLALADSAGHVDLRRLMGELGVRGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L EI+ +G D
Sbjct: 306 EAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEIRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|28867918|ref|NP_790537.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tomato str. DC3000]
gi|28851154|gb|AAO54232.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 381
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 218/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 16 MAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA---GELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G G+ +L++AGISV+
Sbjct: 73 RGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGISVQ 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 133 CGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 193 RAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLDTPF 252
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + T + + ED GHE++ L ++ G VDL+ ++ ELG R +NE+ +
Sbjct: 253 F---QAGSALVVTCAAASARGRYQED-GHEMLALADSAGHVDLRRLMGELGARGVNEVLV 308
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 309 EAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRAVGND 368
Query: 346 IRILA 350
R++A
Sbjct: 369 WRVIA 373
>gi|395228122|ref|ZP_10406446.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp.
A1]
gi|421843747|ref|ZP_16276907.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|424730619|ref|ZP_18159214.1| riboflavin biosynthesis protein [Citrobacter sp. L17]
gi|394718244|gb|EJF23881.1| riboflavin bifunctional biosynthesis protein ribD [Citrobacter sp.
A1]
gi|411775468|gb|EKS58914.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Citrobacter freundii ATCC 8090 = MTCC 1658]
gi|422894812|gb|EKU34619.1| riboflavin biosynthesis protein [Citrobacter sp. L17]
gi|455641827|gb|EMF20998.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Citrobacter freundii GTC 09479]
Length = 367
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 144/353 (40%), Positives = 215/353 (60%), Gaps = 21/353 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKAQGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM E
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEV 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKG-GGS 234
T TVL D+P+L VR S + S+ QP RIV+DS ++ P R+++ G +
Sbjct: 192 TSSATVLADDPQLTVRWSELGESTQASYPQEELRQPIRIVLDSQNQVTPEHRIVQQPGET 251
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
I D P R E + + +P + G +DL ++++LGK++IN + +EAG L A
Sbjct: 252 WIVRTEDDP--RSWPETV--RSLKVPEHNGHLDLVVLMMQLGKQQINSIWVEAGPTLAGA 307
Query: 295 LILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
L+ G VDEL++Y++P L+G +A + LP L KF+EI+++GPD+
Sbjct: 308 LLQAGLVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRQVGPDV 360
>gi|301381786|ref|ZP_07230204.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tomato Max13]
gi|302061014|ref|ZP_07252555.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tomato K40]
gi|302130534|ref|ZP_07256524.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
tomato NCPPB 1108]
Length = 378
Score = 265 bits (676), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 218/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 13 MAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G G+ +L++AGISV+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGISVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLDTPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + T + + ED GHE++ L ++ G VDL+ ++ ELG R +NE+ +
Sbjct: 250 F---QAGSALVVTCAAASARGRYQED-GHEMLALADSAGHVDLRRLMGELGARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 306 EAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|432848191|ref|ZP_20080063.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE144]
gi|431402540|gb|ELG85852.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE144]
Length = 367
Score = 265 bits (676), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 214/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GDKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARLDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWGEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + LP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCILPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|213969282|ref|ZP_03397420.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
gi|213925960|gb|EEB59517.1| conserved hypothetical protein [Pseudomonas syringae pv. tomato T1]
Length = 366
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 218/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 1 MAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA---GELA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G G+ +L++AGISV+
Sbjct: 58 RGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGISVQ 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 118 CGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 178 RAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLDTPF 237
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + T + + ED GHE++ L ++ G VDL+ ++ ELG R +NE+ +
Sbjct: 238 F---QAGSALVVTCAAASARGRYQED-GHEMLALADSAGHVDLRRLMGELGARGVNEVLV 293
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 294 EAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRAVGND 353
Query: 346 IRILA 350
R++A
Sbjct: 354 WRVIA 358
>gi|449052980|ref|ZP_21732399.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae hvKP1]
gi|448875765|gb|EMB10772.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae hvKP1]
Length = 367
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 211/352 (59%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGVHYRAGEPHAEVHALRMA---GEKARGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PWV++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + S QP R+VIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEHRIVQQAGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F A +R+ E +++P + G +DL +++ LGK++IN + +EAG L AL
Sbjct: 252 LF-ARLRADERQWPESA--RTLLVPEHNGHLDLVLLMMLLGKQQINSVWVEAGATLAGAL 308
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G A + LP L + KF+EI+++GPD+
Sbjct: 309 LQAGLVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPDV 360
>gi|392546200|ref|ZP_10293337.1| riboflavin biosynthesis protein [Pseudoalteromonas rubra ATCC
29570]
Length = 372
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 142/355 (40%), Positives = 212/355 (59%), Gaps = 17/355 (4%)
Query: 6 QQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVY 65
QQ + + ++PNP VGCVIV I+ G+ G HAE+ AL A A+ +T Y
Sbjct: 19 QQGRFT--TTPNPNVGCVIVNNGEIVGEGFHLRAGEPHAEVHALREAKAR---ARGATAY 73
Query: 66 ITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQK 125
+TLEPCS++G TPPC + LI++G+ KVI A+ DPNP V+G+G+A L AGI GL+++
Sbjct: 74 VTLEPCSHYGRTPPCAKGLIEAGVSKVIAAMVDPNPEVAGRGLAMLNEAGIETASGLLEQ 133
Query: 126 EAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCA 185
+A +N GF RM+ G+P+V K+A+SLD KT+L N S+WIT + +R D + RA+SCA
Sbjct: 134 QARALNKGFLKRMEHGLPFVICKLAASLDGKTALGNGESKWITGEAARRDVQLGRAQSCA 193
Query: 186 ILTGIGTVLKDNPRLNVRS---------IKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCI 236
ILTG TVL D+ RLNVR+ ++ QP R++IDS R+ P + K +
Sbjct: 194 ILTGADTVLVDDARLNVRAQELADIERPVEQWRQPIRVIIDSQNRLHPELALFKIPSPVV 253
Query: 237 FTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
+DL + + E I + + GK+DL A + L +R IN++ +EAG L A+
Sbjct: 254 ILRSDLDNQHNWPHFV--EQIKITTHAGKIDLHAALSTLAERNINQVWLEAGATLAGAMH 311
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
+ +DE L+Y++P +IG ++F P S+ + +L E+ IG DIR+ A
Sbjct: 312 QQSLIDEYLIYLAPKIIGTHGKDLFNSAPLASMSEITELHIAEVVSIGTDIRVTA 366
>gi|300715569|ref|YP_003740372.1| riboflavin biosynthesis protein RibD [Erwinia billingiae Eb661]
gi|299061405|emb|CAX58515.1| Riboflavin biosynthesis protein RibD [Erwinia billingiae Eb661]
Length = 368
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 214/366 (58%), Gaps = 28/366 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ ++ GY G HAE+ AL A G
Sbjct: 7 MARALELARRGRFTTTPNPNVGCVIVRDGVMVGEGYHFRAGEPHAEVHALRMA---GDKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +VI A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 QGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVIAAMQDPNPEVAGRGLYRLQQAGIEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +EA +N GF RM+ G PWV++K+ +SLD +T++ N SQWITS E+R D
Sbjct: 124 HGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMANGESQWITSAEARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL DNP L VR + QP R+VIDS ++ P R
Sbjct: 184 RAQSSAILSTSATVLADNPSLTVRWQDLAADTQAAYAEADLRQPVRVVIDSQNQVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH----EVIVLPNNLGKVDLQAVIIELGKRKINEL 283
++ G + R+ ++L E ++P + DL ++++ LG+R+IN +
Sbjct: 244 LISQSGETW-------LARQQADNLNWPENVEQFLVPRHNDHTDLVSLMMLLGRRQINTV 296
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKI 342
+EAG +L AL+ G VDEL++Y++P L+G+ A + LP L F + +++
Sbjct: 297 WVEAGAKLAGALLTAGVVDELIVYMAPKLLGDNARGLCHLPGIAHLADAPAFTFSDSRQV 356
Query: 343 GPDIRI 348
GPDIR+
Sbjct: 357 GPDIRL 362
>gi|317047149|ref|YP_004114797.1| riboflavin biosynthesis protein RibD [Pantoea sp. At-9b]
gi|316948766|gb|ADU68241.1| riboflavin biosynthesis protein RibD [Pantoea sp. At-9b]
Length = 370
Score = 264 bits (675), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 212/362 (58%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ I+ G+ G HAE+ AL A G
Sbjct: 7 MARALELARRGCFTTTPNPNVGCVIVRDGEIVGEGWHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIAVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM A IN GF RM+ G PW+++K+ +SLD +T++ + SQWITS +R D +
Sbjct: 124 HGLMMNAAEAINRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQRF 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL DNP L VR + QP R+VIDS R+ P R
Sbjct: 184 RAQSSAILTTSATVLADNPSLTVRWNELNDEVRQQLDEQQLRQPVRVVIDSQQRVTPQHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G + P + E + I +P ++DL A+++ LG+R+IN + +EA
Sbjct: 244 LIDQPGE-TWLMRSAPDQHVWPESVTQ--IAVPQRESQLDLVAMMMLLGQRQINSVWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G +L AL+ G VDEL++Y++P L+G A + LP L L F +++++G D+
Sbjct: 301 GAKLAGALLQAGLVDELIVYLAPKLLGNAARGLCELPGLEHLAAAPALNFSDVRRVGGDL 360
Query: 347 RI 348
R+
Sbjct: 361 RL 362
>gi|422659609|ref|ZP_16722033.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331018226|gb|EGH98282.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 378
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 218/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 13 MAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G G+ +L++AGISV+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALISAGLARVVAAMQDPNPQVAGSGLLRLMTAGISVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLDTPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + T + + ED GHE++ L ++ G VDL+ ++ ELG R +NE+ +
Sbjct: 250 F---QAGSALVVTCAAASARGRYQED-GHEMLALADSAGHVDLRRLMGELGARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 306 EAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|422646401|ref|ZP_16709534.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330959948|gb|EGH60208.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 381
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 217/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 16 MARALELARKGLYSTHPNPRVGCVIVRDGQIVGEGWHARAGEPHAEVHALRQA---GELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 73 RGATAYVTLEPCSHQGRTPPCADALVDAGLARVVAAMQDPNPEVSGRGLLRLMNAGIGVQ 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 133 CGVLESEARALNKGFLKRMETGRPYVRVKLAMSLDGRTAMASGESQWITGPEARSAVQRL 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL DN RL VR ++ + P R++ID LR+ PF
Sbjct: 193 RAQSSVVLTGADTVLADNARLTVRPDELGLNAEMSALAATSPPLRVLIDGRLRVPLDAPF 252
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 253 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELANRGVNEVLV 308
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + + ++L+ E++ +G D
Sbjct: 309 EAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELQIVEMRAVGND 368
Query: 346 IRILA 350
R++A
Sbjct: 369 WRVIA 373
>gi|420370079|ref|ZP_14870695.1| riboflavin biosynthesis protein RibD [Shigella flexneri 1235-66]
gi|391320508|gb|EIQ77340.1| riboflavin biosynthesis protein RibD [Shigella flexneri 1235-66]
Length = 367
Score = 264 bits (675), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 145/353 (41%), Positives = 215/353 (60%), Gaps = 21/353 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKAQGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM E
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEV 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
++N GF RM+ G P+V++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARCDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKG-GGS 234
T TVL D+P+L VR S + S+ QP RIV+DS ++ P R+++ G +
Sbjct: 192 TSSATVLADDPQLTVRWSELGESTQASYPQENLRQPIRIVLDSQNQVTPEHRIVQQPGET 251
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
I D P R E + + +P + G +DL ++++LGK++IN + +EAG L A
Sbjct: 252 WIVRTKDDP--RSWPETV--RSLKVPEHNGHLDLVVLMMQLGKQQINSIWVEAGPTLAGA 307
Query: 295 LILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
L+ G VDEL++Y++P L+G +A + LP L KF+EI+++GPD+
Sbjct: 308 LLQAGVVDELIVYVAPKLLGSDARGLCVLPGLEKLVDAPHFKFNEIRQVGPDV 360
>gi|395232631|ref|ZP_10410881.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter sp. Ag1]
gi|394733033|gb|EJF32672.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter sp. Ag1]
Length = 372
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 215/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AK ++PNP VGCVIVK+ I+ G+ G HAE+ AL A G
Sbjct: 8 MARALELAKRGRFTTAPNPNVGCVIVKDGNIVGEGFHFRAGEPHAEVHALRMA---GEQA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEVS 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ +SLD +T++ + S+WITS ++R D
Sbjct: 125 HGLMMNEAEALNRGFLKRMRTGFPFIQLKLGASLDGRTAMASGESKWITSPQARRDVQRQ 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL DNP L VR S + QP RIV+D R+ P +
Sbjct: 185 RAQSAAILSSDATVLADNPSLTVRWDELDSASQAIYSQQDLRQPIRIVLDRQNRVTPQHQ 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G + A ++ ED+ E +++P + G +DL ++++LGKR++N + +EA
Sbjct: 245 IIANPGQ-TWLARSQADEQSWPEDV--EQLLVPEHNGHLDLVVLMMQLGKRQVNSVWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A + LP L F E++++GPD+
Sbjct: 302 GATLAGALLQAGLVDELIVYVAPKLLGNDARGLCELPGLEKLADAPAFSFSEVRQVGPDL 361
>gi|206578559|ref|YP_002240118.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Klebsiella pneumoniae 342]
gi|206567617|gb|ACI09393.1| riboflavin biosynthesis protein RibD [Klebsiella pneumoniae 342]
Length = 367
Score = 264 bits (674), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 210/348 (60%), Gaps = 19/348 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKAQGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA +N
Sbjct: 76 SHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMNEAEALN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G PWV++K+ +SLD +T++ + SQWITS ++R D RA+S AILT
Sbjct: 136 KGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAILTSSA 195
Query: 192 TVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P L VR + S QP R+VIDS R+ P R+++ G +F A
Sbjct: 196 TVLADDPALTVRWQELSADTQALYPEENLRQPLRVVIDSQNRVTPEHRIVQQAGETLF-A 254
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
+R+ E + +++P G +DL +++ LGK+++N + +EAG L AL+ G
Sbjct: 255 RLRADERQWPESV--RTLLVPEYNGHLDLVLLMMLLGKQQVNSVWVEAGATLAGALLQAG 312
Query: 300 CVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
VDEL++YI+P L+G A + LP L + KF+EI+++GPD+
Sbjct: 313 LVDELIVYIAPKLLGNAARGLCALPGLEELSQAPHFKFNEIRQVGPDV 360
>gi|392556143|ref|ZP_10303280.1| riboflavin biosynthesis protein [Pseudoalteromonas undina NCIMB
2128]
Length = 375
Score = 264 bits (674), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 145/367 (39%), Positives = 213/367 (58%), Gaps = 28/367 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK ++I G+ + G HAE++AL A G +
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKNNKVIGEGFHQLAGQGHAEVNALTMA---GENA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L +G+KKV+ A+ D NP V+GKG+ L AGI V
Sbjct: 72 KGATAYVTLEPCSHYGRTPPCAEGLKAAGVKKVVAAMVDSNPQVAGKGLKILADAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A +N+GFF RM++G+P+V K+A+S+D KT+L N S+WIT +R D ++
Sbjct: 132 YGLLEEQARALNLGFFKRMEQGLPFVTCKMAASIDGKTALKNGQSKWITGPAARQDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH---------QPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL D+ +LNVR + H QP R++IDS R+ P +
Sbjct: 192 RAQSCAILTGADTVLMDDAKLNVRPEELPHSLPTNLPLRQPVRVIIDSQNRLTPELALFS 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHE------VIVLPNNLGKVDLQAVIIELGKRKINELH 284
I T + D H+ I +P KVDLQA + +L + + N +
Sbjct: 252 IQSEVIIFTTRV--------DKSHQWPHFVKQIEVPEKNNKVDLQAALQKLAQLQFNNVW 303
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG L + +DE + YI+P L+G +A ++ P S+ I L F+E IG
Sbjct: 304 LEAGATLAGKMAELDLIDEFVFYIAPKLMGSDARSLLNFPELMSMQNTINLTFNECVPIG 363
Query: 344 PDIRILA 350
D+RI A
Sbjct: 364 DDLRITA 370
>gi|398798201|ref|ZP_10557502.1| riboflavin biosynthesis protein RibD [Pantoea sp. GM01]
gi|398100918|gb|EJL91146.1| riboflavin biosynthesis protein RibD [Pantoea sp. GM01]
Length = 367
Score = 263 bits (673), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 211/362 (58%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV+E I+ G+ + G HAE+ AL A G
Sbjct: 7 MARALELARRGRFTTTPNPNVGCVIVREGEIVGEGWHQRAGEPHAEVHALRMA---GERA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGIEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G PW+++K+ +SLD +T++ N SQWITS +R D
Sbjct: 124 HGLMMSEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMANGESQWITSAAARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL DNP L VR + S QP R+VIDS R+ P
Sbjct: 184 RAQSSAILSTSATVLADNPSLTVRWGELSADVRAQLDEAQLRQPVRVVIDSQQRVTPQHS 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G ++ P ++ + I +P ++DL A+++ LG+R+IN + +EA
Sbjct: 244 LIGQPGETWLMRSE-PDQQAWPASVTQ--IAVPQRGEQLDLVAMMMLLGQRQINSVWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G A + LP L L F +++ +G D+
Sbjct: 301 GASLAGALLQAGLVDELIVYMAPKLLGNTARGLCALPGLEQLADAPALNFSDVRLVGEDL 360
Query: 347 RI 348
R+
Sbjct: 361 RL 362
>gi|422651849|ref|ZP_16714640.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330964923|gb|EGH65183.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 378
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 218/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 13 MAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G G+ +L++AGISV+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALISAGLGRVVAAMQDPNPQVAGSGLLRLMTAGISVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLEGEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLDTPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + T + + ED GHE++ L ++ G VDL+ ++ ELG R +NE+ +
Sbjct: 250 F---QAGSALVVTCAAASARGRYQED-GHEMLALADSAGHVDLRRLMGELGARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 306 EAGPRLAGAFTRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIIEMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|374703969|ref|ZP_09710839.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. S9]
Length = 378
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 137/362 (37%), Positives = 218/362 (60%), Gaps = 16/362 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ RI+ G+ G HAE+ AL A A+
Sbjct: 8 MARALELARKGLYSTHPNPRVGCVIVQDGRIVGEGWHARSGEPHAEVHALRQAGAR---A 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP VSG G+ +L+ AGI+V+
Sbjct: 65 KGATAYVTLEPCSHHGRTPPCADALIDAGVARVVAAMQDPNPQVSGSGLLRLMQAGIAVQ 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ +A E+N GF RM++G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 125 SGVLEAQARELNAGFIKRMEQGLPFVRVKLAMSLDGRTAMASGESQWITGPAARSAVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+G TVL D+ RL VR ++ + P R++ID LR+
Sbjct: 185 RARSSVVLSGADTVLADDARLTVRNEELGLNAELSALADARPPLRVLIDGRLRVPLDAAF 244
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
+ G + + T + + L + GHE++ +P + G VDL+ +++EL R NE+ +EAG
Sbjct: 245 FQAGAAMVATCAAATARDRYLSE-GHELLAVPGSNGHVDLRKLLVELAARGSNEILVEAG 303
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A +G VDE ++++ +G + P + + +LK +I+ +G D RI
Sbjct: 304 PRLAGAFARQGLVDEYQIFVAAKFLGSSARPLLDLPLGRMAEAPQLKITDIRAVGDDWRI 363
Query: 349 LA 350
+A
Sbjct: 364 IA 365
>gi|259909281|ref|YP_002649637.1| Riboflavin biosynthesis protein RibD [Erwinia pyrifoliae Ep1/96]
gi|387872242|ref|YP_005803623.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Erwinia pyrifoliae DSM 12163]
gi|224964903|emb|CAX56426.1| Riboflavin biosynthesis protein RibD [Erwinia pyrifoliae Ep1/96]
gi|283479336|emb|CAY75252.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Erwinia pyrifoliae DSM 12163]
Length = 367
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 219/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCV+V++ +I+ GY G HAE+ AL A G
Sbjct: 7 MARALELARRGRFTTTPNPNVGCVLVRDGQIVGEGYHMLAGEPHAEVHALRMA---GEKS 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +GIK+V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 LGATAYVTLEPCSHHGRTPPCCEALIAAGIKRVVTAMQDPNPQVAGRGLYRLQQAGIEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +EA +N GF RM+ G PWV++K+ +SLD +T++ + SQWITS E+R D
Sbjct: 124 HGLMMQEAEALNRGFLKRMRTGFPWVQLKLGASLDGRTAMASGESQWITSPEARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS------------IKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL DNP L VR + QP R+++D R+ P +R
Sbjct: 184 RAQSSAILSTSATVLADNPALTVRHDELDSASLADYPVDLLRQPVRVIVDGQNRVTPEYR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G T +++ E++ ++ L N ++DL ++++ LGK++IN + +EA
Sbjct: 244 LVAQPGETWLARTSGD-RQQWPENVSQLIVPLYQN--RLDLVSLLMLLGKKQINSVWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G Q AL+ G VDEL++Y++P L+G+A + LP +L F +I+++GPDI
Sbjct: 301 GAQFAGALLQAGVVDELIVYLAPKLLGDAGRGLCQLPGLETLAAAPAFTFSDIRQVGPDI 360
Query: 347 RI 348
R+
Sbjct: 361 RL 362
>gi|183601038|ref|ZP_02962531.1| hypothetical protein PROSTU_04659 [Providencia stuartii ATCC 25827]
gi|188019376|gb|EDU57416.1| riboflavin biosynthesis protein RibD [Providencia stuartii ATCC
25827]
Length = 371
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 217/366 (59%), Gaps = 21/366 (5%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K +SPNP VGCVIV++ I+ GY + G HAE+ AL A G
Sbjct: 9 MARALELAQKGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMA---GEKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+++V+ A+ DPNP V+G+G+ L AGI
Sbjct: 66 KGATAYVTLEPCSHHGRTPPCAEALINAGVRRVVAAMQDPNPQVAGRGLYMLSQAGIETA 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ +EA +N GF RM+ P+V++K+A+SLD KT+L + S+WITS +R D +
Sbjct: 126 SGVLMEEAESLNRGFLKRMRTAFPYVQLKLAASLDGKTALESGESKWITSAAARQDVQVL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL DNP L VR T QP RIV+D++ R+ ++
Sbjct: 186 RAQASAILSTSSTVLADNPSLTVRWNELPAEIHAVYPQSTLRQPIRIVLDNHNRVTAEYK 245
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
V + G C + P + + G E + +P++ +DL ++++L KR +N + +E
Sbjct: 246 VTQLAGECWLVRSQ-PEPDAVWQ--GQVEQLAIPSDDNGIDLVILMMQLAKRNVNSIWVE 302
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L +L+ G VDEL++YI+P L+G+ A + +P L K +F ++QK+G D
Sbjct: 303 AGPILAGSLLKLGLVDELIVYIAPKLLGDTARGLVNIPALAHLSDAQKFEFTDVQKVGDD 362
Query: 346 IRILAR 351
+R+ R
Sbjct: 363 LRVRLR 368
>gi|237797512|ref|ZP_04585973.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
oryzae str. 1_6]
gi|331020362|gb|EGI00419.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
oryzae str. 1_6]
Length = 381
Score = 263 bits (673), Expect = 7e-68, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 220/365 (60%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 16 MAHALELARKGLYSTHPNPRVGCVIVRDGQIVGEGWHARAGEPHAEVHALRQA---GELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+++G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 73 RGATAYVTLEPCSHQGRTPPCADALVEAGLSRVVAAMQDPNPEVSGRGLLRLMNAGIGVQ 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P++R+K+A SLD +T++ + SQWIT E+R+
Sbjct: 133 CGVLENEARALNKGFLKRMETGRPYIRVKLAMSLDGRTAMASGESQWITGPEARSAVQRL 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D+ RL VR ++ + P R++ID LR+ PF
Sbjct: 193 RAQSSVVLTGADTVLVDSARLTVRPEELGLSAELTALAAARPPLRVLIDGRLRVPLDAPF 252
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + T + + ED GHE++ L ++ G VDL+ ++ ELG R +NE+ +
Sbjct: 253 F---QAGNALVVTCAAASARGRYQED-GHEMLALADSAGHVDLRKLMGELGARGVNEVLV 308
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + + ++L E++ +G D
Sbjct: 309 EAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGND 368
Query: 346 IRILA 350
R++A
Sbjct: 369 WRVIA 373
>gi|417627353|ref|ZP_12277600.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_MHI813]
gi|345377657|gb|EGX09588.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_MHI813]
Length = 361
Score = 263 bits (673), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARLDVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + HQP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLHQPIRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPAHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|359446256|ref|ZP_09235952.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. BSi20439]
gi|358039939|dbj|GAA72201.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. BSi20439]
Length = 375
Score = 263 bits (672), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 213/367 (58%), Gaps = 28/367 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK ++I G+ + G HAE++AL A G +
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKNNKVIGEGFHQLAGQGHAEVNAL---AMAGENA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L +G+KKVI A+ D NP V+GKG+ L AGI V
Sbjct: 72 KGATAYVTLEPCSHYGRTPPCAEGLKAAGVKKVIAAMVDSNPQVAGKGLKILADAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N+GFF RM++G+P+V K+A+S+D KT+L N S+WIT +R D ++
Sbjct: 132 YGLLEAQARALNLGFFKRMEQGLPFVTCKMAASIDGKTALKNGQSKWITGPAARQDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTS---HQPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL D+ +LNVR S+ T QP R+VIDS R+ P +
Sbjct: 192 RAQSCAILTGADTVLMDDAKLNVRPEELPYSLPTDLPLRQPVRVVIDSQNRLTPDLALFS 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHE------VIVLPNNLGKVDLQAVIIELGKRKINELH 284
I T + D H+ I +P N KVDL AV+ L + + N +
Sbjct: 252 IQSEVIIFTTKV--------DKSHQWPHFVKQIEVPENNNKVDLLAVLHTLAQLQFNNVW 303
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG L + +DE + YI+P L+G +A ++ P S+ I L F+E IG
Sbjct: 304 LEAGATLAGKMTELDLIDEFVFYIAPKLMGSDAKSLLNFPELMSMQNTINLTFNECVPIG 363
Query: 344 PDIRILA 350
D+RI A
Sbjct: 364 DDLRITA 370
>gi|254787586|ref|YP_003075015.1| riboflavin biosynthesis protein RibD [Teredinibacter turnerae
T7901]
gi|237683563|gb|ACR10827.1| riboflavin biosynthesis protein RibD [Teredinibacter turnerae
T7901]
Length = 363
Score = 263 bits (672), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 135/352 (38%), Positives = 216/352 (61%), Gaps = 7/352 (1%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ +N++ PNPRVGCV+VK+ +I GY G HAE++AL + +
Sbjct: 11 MQQALRLAEEGLNTTTPNPRVGCVLVKDGVVIGEGYHHRAGEPHAEVNAL-KSVIDRQQL 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC +AL+ +GI +++ A+ DPNPLV+G+G+ +L AG+ V
Sbjct: 70 AGATAYVTLEPCSHTGKTGPCADALVDAGIGRLVYAMEDPNPLVAGRGLDKLQRAGVVVD 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
L+++EA +N+GF RM+ G+P VR K+A SLD +T++ + S+WIT +R D
Sbjct: 130 GPLLEEEALSLNLGFVKRMRTGLPLVRCKLAMSLDGRTAMRSGESKWITGPSARADVQKL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RARSCAI+TG+ +VL D+P L VR + QP R+++DS LR+DP V + G+ +
Sbjct: 190 RARSCAIITGVESVLLDDPLLTVRLPECERQPIRVIVDSQLRVDPSAEVFRQPGTTLVAT 249
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
D + + +L + LP +G VDL+ +++ L + + NE+ +E G +L A +
Sbjct: 250 CD--AAKALNSEL--DTWPLPEKMGHVDLRELLLGLAEHYQCNEVLLETGAKLAGAFVAA 305
Query: 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
G VDEL++Y++ L+G P ++ ++L +++ +GPD RI A
Sbjct: 306 GLVDELIVYVAAKLMGSDARPLLELPILTMGASLELTIKDVRAVGPDWRITA 357
>gi|157960990|ref|YP_001501024.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC
700345]
gi|157845990|gb|ABV86489.1| riboflavin biosynthesis protein RibD [Shewanella pealeana ATCC
700345]
Length = 373
Score = 263 bits (672), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 217/366 (59%), Gaps = 18/366 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+LA++ A+ + + PNP VG VIVK+ I+ GY GG HAE+ AL A G D
Sbjct: 10 MSLAIELAQKGMYTTRPNPSVGSVIVKDGEIVGEGYHIRAGGPHAEVYALNMA---GSDA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC +ALI+ G+ +V+IA+ DPNP VSG+G+A L AGI V
Sbjct: 67 KGATAYVTLEPCSHYGRTPPCAKALIEHGVSRVVIAVTDPNPEVSGRGIAMLRDAGIRVD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +EA ++N+GF RM++G+PWV +K+A+SLD KT+L N S+WIT E+R D
Sbjct: 127 VGLMTEEAKQVNLGFLKRMEKGLPWVTVKLAASLDGKTALSNGVSKWITGPEARRDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-----------HQPYRIVIDSYLRIDPFFRV 228
RAR CA++TG+ T+L D+P LNVR + HQP R+V+DS R+ +
Sbjct: 187 RARHCALVTGVETILADDPSLNVRHSELGSLASQLAPAEIHQPLRVVLDSQARLGHELNL 246
Query: 229 LKGGGSCIFTATDL-PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
K + +T P + + VL ++DL A++ LG+ N + +EA
Sbjct: 247 FKIDSPILLVSTQAYPESVQAAWPPHVQSQVLAAVDSRIDLNALLSLLGE-SCNSVLVEA 305
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L A + +G DE++LY + ++G + N+ TL ++ + K+ + +K+GPD
Sbjct: 306 GATLAGAFVNQGLADEIVLYQAMKILGSQGRNLLTLDDFQAMSEVPKINLIDERKVGPDT 365
Query: 347 RILARF 352
R+ R
Sbjct: 366 RLTLRV 371
>gi|315125800|ref|YP_004067803.1| riboflavin biosynthesis protein [Pseudoalteromonas sp. SM9913]
gi|315014314|gb|ADT67652.1| riboflavin biosynthesis protein [Pseudoalteromonas sp. SM9913]
Length = 375
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/367 (40%), Positives = 212/367 (57%), Gaps = 28/367 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK +II G+ + G HAE++AL A G +
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKNNKIIGEGFHRLAGQGHAEVNALTMA---GENA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L +G+KKVI A+ D NP V+GKG+ L AGI V
Sbjct: 72 KGATAYVTLEPCSHYGRTPPCAEGLKAAGVKKVIAAMVDSNPQVAGKGLKILADAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N GFF RM++G+P+V K+A+S+D KT+L N S+WIT +R D ++
Sbjct: 132 YGLLEAQARALNFGFFKRMEQGLPFVTCKMAASIDGKTALKNGQSKWITGPAARQDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTS---HQPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL D+ +LNVR S+ T QP R+VIDS R+ P +
Sbjct: 192 RAQSCAILTGADTVLMDDAKLNVRPEELPYSLPTDLPLRQPVRVVIDSQNRLTPDLALFS 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHE------VIVLPNNLGKVDLQAVIIELGKRKINELH 284
I T + D H+ I +P N KVDL AV+ L + + N +
Sbjct: 252 IQSEVIIFTTKV--------DKSHQWPHFVKQIEVPENNNKVDLLAVLHTLAQLQFNNVW 303
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG L + +DE + YI+P L+G +A ++ P S+ I L F+E IG
Sbjct: 304 LEAGATLAGKMTELDLIDEFVFYIAPKLMGSDAKSLLNFPELMSMQNTINLTFNECVPIG 363
Query: 344 PDIRILA 350
D+RI A
Sbjct: 364 DDLRITA 370
>gi|109897636|ref|YP_660891.1| riboflavin biosynthesis protein RibD [Pseudoalteromonas atlantica
T6c]
gi|109699917|gb|ABG39837.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas atlantica T6c]
Length = 372
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 144/366 (39%), Positives = 216/366 (59%), Gaps = 20/366 (5%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M LA++ A K +SPNP VGCVI + I+ G+ + G HAEI A+ A G
Sbjct: 12 MALAIRLAEKGQYTTSPNPNVGCVITDAQGNIVGQGWHQKAGTPHAEIHAIAQA---GER 68
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPC++ G T PC+EAL+ +G+K+V+ A+ DPNPLV+G G+ +L AG+ V
Sbjct: 69 TKGATAYVTLEPCNHHGRTGPCSEALLDAGVKRVVAAMVDPNPLVAGSGLQKLSDAGVQV 128
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
GL++ EA +N GF RMQ G PWV +K+ASSLD KT+L N SQWIT +R D
Sbjct: 129 SSGLLESEAKALNRGFIKRMQTGKPWVTVKLASSLDGKTALNNGESQWITGPLAREDVQR 188
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTS-----------HQPYRIVIDSYLRIDPFFR 227
RA+SCAIL+G GTVL DNP LNVR + QP R+++D ++ P
Sbjct: 189 HRAQSCAILSGSGTVLADNPSLNVRYSELGFARNALAEVNLRQPVRVLLDGRNQMRPDLH 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+ S I P + + + E +N ++DLQ V+ LG+R N + +EA
Sbjct: 249 LF-ALSSPIVIINSQPNTAEFPDHV--EQYQAQSNGAQLDLQDVMKHLGQRGFNHIWVEA 305
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G +L AL+ +DEL+LY +P L+G+ ++F + + + +L++ +++++GPD+
Sbjct: 306 GAKLAGALLQNKLIDELILYQAPKLLGDKGRDLFAVDELTQMQQAFELQWQDVRQVGPDL 365
Query: 347 RILARF 352
++ ARF
Sbjct: 366 KLTARF 371
>gi|336248991|ref|YP_004592701.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter aerogenes KCTC 2190]
gi|334735047|gb|AEG97422.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter aerogenes KCTC 2190]
Length = 367
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 144/352 (40%), Positives = 215/352 (61%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GDKAKGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PW+++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWIQLKMGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + S QP RIVIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWQELSADTQALYPQENLRQPLRIVIDSQNRVTPEHRIIQQQGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F T +R +++ +++P + G +DL ++++LGK+++N + +EAG L AL
Sbjct: 252 LFARTHAD-ERAWPDNV--RTLLVPEHNGHLDLVLLMMQLGKQQVNSIWVEAGPTLAGAL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G +A + LP L + KF+EI+++GPD+
Sbjct: 309 LQAGLVDELIVYIAPKLLGSDARGLCALPGLEKLSQAPHFKFNEIRQVGPDV 360
>gi|392308003|ref|ZP_10270537.1| riboflavin biosynthesis protein [Pseudoalteromonas citrea NCIMB
1889]
Length = 370
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 206/349 (59%), Gaps = 15/349 (4%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNP VGCV+VK+ ++ G+ + G HAE+ AL A G +T Y+TLEPCS
Sbjct: 24 TTTPNPNVGCVVVKDGYVVGEGFHQRAGEPHAEVHAL---KAAGSRASGATAYVTLEPCS 80
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC E LIK+G+ +V+ A+ DPNP V+G+G+A L AGI GL++ +A +N
Sbjct: 81 HYGRTPPCAEGLIKAGVARVVAAMVDPNPQVAGRGLAMLKEAGIETASGLLEAQARALND 140
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF RM+ G+P+V K+A+S+D KT+L N S+WITS ++R D +RA+SCAILTG T
Sbjct: 141 GFLKRMETGLPFVTCKLAASVDGKTALNNGESKWITSSQARQDVQGFRAQSCAILTGADT 200
Query: 193 VLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLP 243
VL D+ +LNVR + QP R++ DS R+ P + + I T L
Sbjct: 201 VLADDAKLNVRETECDITLPEGTSLRQPIRVIFDSQNRLTPALALFQFSSPIIILRTSLD 260
Query: 244 MKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDE 303
++ + E +V+P K+D Q+V+ L KR +N + +EAG L + +DE
Sbjct: 261 NTQQWPHFV--EQVVVPKQGEKIDCQSVLALLAKRGVNRVWLEAGATLAGVFHQQNLIDE 318
Query: 304 LLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
++Y++P +IG + +F P +++ L F ++++G DIR+ R
Sbjct: 319 FVVYLAPKIIGHDGRGLFNTPELTHMNEITALNFTSVERVGDDIRLTLR 367
>gi|71731320|gb|EAO33384.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Xylella fastidiosa subsp. sandyi Ann-1]
Length = 364
Score = 263 bits (672), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 210/343 (61%), Gaps = 10/343 (2%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNP VGCVIV++ ++ G+ + G HAE+ AL A G +T Y+TLEPC+
Sbjct: 25 TTRPNPMVGCVIVRDGEVVGEGWHQRAGDPHAEVFAL---CAAGDLARGATAYVTLEPCA 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC ALI +G+++V+ A+ DP PLV+G GV L +AG++V+ GLM+ +A +N
Sbjct: 82 HSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAAGVTVEHGLMEAQARALNR 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SR++RG PWVR+K+ SSLD +T+L + S+WIT + +R D WRAR+ AILTG GT
Sbjct: 142 GFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARVDVQRWRARASAILTGAGT 201
Query: 193 VLKDNPRLNVRSIKTSHQ---PYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKIL 249
VL D+P L VR P R+V+DS LR +V G ++ + +L
Sbjct: 202 VLADDPALTVRLGGEEGAFLPPLRVVLDSSLRSLSCVKVRDGTAPTLYL-HGFGVTSPVL 260
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ + + +DL+AV+ LG+R INE+ +EAG L AL+ G VDELL+YI+
Sbjct: 261 QHVDFSEV--QQRDAGLDLEAVLRLLGERGINEVQVEAGATLCGALLHAGLVDELLIYIA 318
Query: 310 PILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
P+L+G+ A + +D+ I LK E+ ++G D+R+L R
Sbjct: 319 PLLLGDTARPLLAGLDIGRMDQCIGLKVLEVAQVGNDLRLLLR 361
>gi|88859176|ref|ZP_01133817.1| Riboflavin biosynthesis protein [Pseudoalteromonas tunicata D2]
gi|88819402|gb|EAR29216.1| Riboflavin biosynthesis protein [Pseudoalteromonas tunicata D2]
Length = 373
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 145/363 (39%), Positives = 212/363 (58%), Gaps = 16/363 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LA++ AK +SPNP VGCV+VK+ +I+ GY + G HAE+ AL A Q
Sbjct: 11 MALAIELAKKGRYTTSPNPNVGCVLVKDGQIVGQGYHQKAGEGHAEVHALAQAKEQAL-- 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC AL+ +G+ KVI A+ DPNP VSG+G+A L AGI
Sbjct: 69 -GATAYVTLEPCSHTGRTGPCALALVNAGVIKVIAAMVDPNPAVSGRGLAILEKAGIQTA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLMQ EA +N+GF RM+ +P+V+ K+A+SLD KT+L N S+WIT +R +
Sbjct: 128 HGLMQVEAEALNVGFLKRMRNAMPFVQCKLAASLDGKTALANGLSKWITGPLARAQVQDY 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSHQPYRIVIDSYLRIDPFFRVLK 230
RA+SCA+LTG TVL DN ++NVR S+ QP R+VIDS R+ P +
Sbjct: 188 RAQSCAVLTGADTVLVDNAKMNVRYDELINPPFSLAQLRQPIRVVIDSKHRLTPDLAFFQ 247
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
I T L + + + H +++P G+VDL + LG R IN + +EAG+
Sbjct: 248 IESPVIILTTKLDISERWPHFVSH--LLVPELNGQVDLSQAMQLLGARGINHIWLEAGHT 305
Query: 291 LNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L + +G VD+ + Y++P LIG + ++ LP S+ + +L ++ +G D++I
Sbjct: 306 LAGQMAQQGLVDQFIFYLAPKLIGHSGKSLLQLPVLESMAEVTELSIDDVSMVGVDLKIT 365
Query: 350 ARF 352
A +
Sbjct: 366 ASY 368
>gi|422590466|ref|ZP_16665121.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330877574|gb|EGH11723.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 378
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 217/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 13 MAHALELARKGLYSTHPNPRVGCVIVRDGQIVGQGWHARAGEPHAEVHALREA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G G+ +L++AGISV+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALISAGLGRVVAAMQDPNPQVAGSGLLRLMTAGISVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESEARALNKGFIKRMETGRPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAACPPLRVLIDGRLRVPLDTPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + T + + ED GHE++ L ++ G VDL+ ++ ELG R +NE+ +
Sbjct: 250 F---QAGSALVVTCAAASARGRYQED-GHEMLALADSAGHVDLRRLMGELGARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+ + +G + P + + ++L EI+ +G D
Sbjct: 306 EAGPRLAGAFTRLGLVDEFQLFTAGKFLGSSARPLLDLPLAQMSEALELNIIEIRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|331656468|ref|ZP_08357430.1| riboflavin biosynthesis protein RibD [Escherichia coli TA206]
gi|422368677|ref|ZP_16449082.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 16-3]
gi|432897199|ref|ZP_20108195.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE192]
gi|433027454|ref|ZP_20215330.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE109]
gi|315299580|gb|EFU58828.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 16-3]
gi|331054716|gb|EGI26725.1| riboflavin biosynthesis protein RibD [Escherichia coli TA206]
gi|431430009|gb|ELH11843.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE192]
gi|431545964|gb|ELI20607.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE109]
Length = 367
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATVYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|260596783|ref|YP_003209354.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Cronobacter turicensis z3032]
gi|260215960|emb|CBA28583.1| Riboflavin biosynthesis protein ribD [Cronobacter turicensis z3032]
Length = 367
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 141/350 (40%), Positives = 208/350 (59%), Gaps = 19/350 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNPRVGCVIV + I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPRVGCVIVNDGVIVGEGFHLRAGEPHAEVHALRMA---GDKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AG+ V GLM EA +N
Sbjct: 76 SHHGRTPPCCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGVEVSHGLMMSEAEALN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D RA S AILT
Sbjct: 136 KGFLKRMRTGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAESHAILTTSA 195
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + QP RIV+D ++ P +++ G + A
Sbjct: 196 TVLADDPSMTVRWDELGEATQAVYPRENLRQPLRIVLDRQNQVTPAHKIVNQPGET-WLA 254
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P E G E + P + GK+DL ++++LGKR++N L +EAG QL AL+ G
Sbjct: 255 RACPDDAVWPE--GVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEAGPQLAGALLQAG 312
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDEL++Y++P L+G EA +F LP L +L+F + ++GPD+R+
Sbjct: 313 LVDELIVYMAPKLLGSEARGLFALPGLERLADAPRLEFRDAVQVGPDLRL 362
>gi|82775681|ref|YP_402028.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella dysenteriae Sd197]
gi|309787001|ref|ZP_07681613.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1617]
gi|81239829|gb|ABB60539.1| bifunctional pyrimidine deaminase/reductase [Shigella dysenteriae
Sd197]
gi|308924579|gb|EFP70074.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1617]
Length = 367
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + HQP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLHQPVRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|377555586|ref|ZP_09785314.1| bifunctional riboflavin biosynthesis protein RibD [endosymbiont of
Bathymodiolus sp.]
Length = 348
Score = 262 bits (670), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 150/358 (41%), Positives = 219/358 (61%), Gaps = 28/358 (7%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDAL--LNAAAQGY 57
M+LALQ A K + NP VGCVIVK+ +II+ GY ++ G HAEI+AL +N A+G
Sbjct: 12 MSLALQLARKGRYGVASNPMVGCVIVKDNKIIAKGYHQTFGKAHAEINALTQINHQAKG- 70
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+T+Y+TLEPC++ G TPPCT+A+I + +K+V+IA DPNPLV GKGVA L AGI
Sbjct: 71 ----ATLYVTLEPCAHQGKTPPCTQAIIDASVKEVVIATLDPNPLVRGKGVAILAGAGIV 126
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
VK GL++ E+ ++N GF RM+ G+P+V KIA S+D KTS+ + S+WIT +E+R D
Sbjct: 127 VKTGLLKNESRQLNRGFIKRMETGLPFVTCKIAMSIDGKTSMASGQSKWITGQEARQDVQ 186
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI-DPFFRVLKGGGSC- 235
RA++ AILTG GT+L DNP + VR P R+VID +I D ++ +
Sbjct: 187 KLRAKNQAILTGSGTILADNPSMTVRLDGVDSMPLRVVIDGKNQITDTTLKIFSNAANTK 246
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
IF + + NN GK+DL V+ +L ++ IN + +E+G +L A+
Sbjct: 247 IFNSGNTQR----------------NNAGKLDLHHVLEQLAQQNINSVLLESGPKLIGAM 290
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+ G VDE +LY +P+L+G A +M L +D+ + L +I+ +G DI+I A
Sbjct: 291 VEAGLVDEFILYTAPLLMGSNATSMIQLAIQ-QMDECLALNIQDIRMVGQDIKITATL 347
>gi|21230168|ref|NP_636085.1| bifunctional riboflavin-specific deaminase/5-amino-6-uracil
reductase [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66769842|ref|YP_244604.1| bifunctional riboflavin-specific deaminase/5-amino-6-uracil
reductase [Xanthomonas campestris pv. campestris str.
8004]
gi|188993059|ref|YP_001905069.1| Riboflavin biosynthesis protein RibD
(Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-[5-phosphoribosylamino]uracil
reductase) [Xanthomonas campestris pv. campestris str.
B100]
gi|21111703|gb|AAM40009.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
[Xanthomonas campestris pv. campestris str. ATCC 33913]
gi|66575174|gb|AAY50584.1| riboflavin-specific deaminase/5-amino-6-uracil reductase
[Xanthomonas campestris pv. campestris str. 8004]
gi|167734819|emb|CAP53029.1| Riboflavin biosynthesis protein RibD
(Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-[5-phosphoribosylamino]uracil
reductase) [Xanthomonas campestris pv. campestris]
Length = 364
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 213/353 (60%), Gaps = 12/353 (3%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 11 MAQALRLAERGAYTTRPNPMVGCVIVRDGACVGEGFHQRAGGPHAEVFALR---AAGEQA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI +G+ +V+ A+ DP P V+G G L AGI V
Sbjct: 68 RGATAYVTLEPCAHYGRTPPCALALIAAGVTRVVAAMADPFPQVNGGGFTLLRDAGIQVH 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M+ +A +N GF SR++RG PWVR+K+ +SLD +T++ + S+WIT ++R D W
Sbjct: 128 SGVMEAQARALNQGFLSRVERGRPWVRVKLGASLDGRTAMASGESKWITGADARADVQRW 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ ILTG GTVL D+P + VR + + P R+V+D+ LR + +G ++
Sbjct: 188 RARAGVILTGAGTVLADDPSMTVRLGEDTPCVPPLRVVLDAGLRTLACANIRQGDAPTLY 247
Query: 238 T-ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
D+ G E +P + G+ DL AV+ L +R INE+H+EAG L+ AL+
Sbjct: 248 LHGADVTAPAFD----GAEFAAMPLHAGRFDLAAVLASLAERGINEVHVEAGATLSGALL 303
Query: 297 LEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+GE A + ++ ++ L+ +++ IG D+R+
Sbjct: 304 QAGLVDELLVYMAPVLLGETARPLLAGLGIDTMAQRHALQLLDVRHIGQDLRL 356
>gi|451967049|ref|ZP_21920296.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Edwardsiella tarda NBRC 105688]
gi|451314202|dbj|GAC65658.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Edwardsiella tarda NBRC 105688]
Length = 371
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 211/353 (59%), Gaps = 19/353 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++PNP VGCV+V++ +I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 23 FTTTPNPNVGCVLVRDGQIVGEGFHLRAGEPHAEVHALRMA---GERARGATAYVTLEPC 79
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI V+ GLM EA +N
Sbjct: 80 SHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYRLQQAGIEVRHGLMLAEAEAVN 139
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P+V++K+ +SLD +T++ + SQWITS +R D +RA+S AIL+
Sbjct: 140 KGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSAAARADVQRYRAQSSAILSSSA 199
Query: 192 TVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P L VR + QP R+++DS+ R+ P R++ G + A
Sbjct: 200 TVLADDPSLTVRWDELDDETQRHYPREWLRQPLRVIVDSHNRVTPQHRLISQPGETLL-A 258
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
+ P + + + LP N +DL ++++LGKR+IN + +EAG +L AL+ G
Sbjct: 259 RETPDTQAWPSAVSQ--LSLPRNGAGLDLVLLMMQLGKRQINSVWVEAGPRLAGALLQAG 316
Query: 300 CVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDEL++Y++P L+G+ A + LP L L F E+ ++G D+R+ R
Sbjct: 317 VVDELIVYLAPKLLGDAARGLCHLPGLERLGDAPSLAFSEVTRVGDDLRLTLR 369
>gi|389784290|ref|ZP_10195444.1| riboflavin biosynthesis protein RibD [Rhodanobacter spathiphylli
B39]
gi|388433204|gb|EIL90171.1| riboflavin biosynthesis protein RibD [Rhodanobacter spathiphylli
B39]
Length = 353
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/361 (41%), Positives = 211/361 (58%), Gaps = 20/361 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVI ++ G+ + G HAE+ AL A G
Sbjct: 1 MAHALRLAERGLFTTQPNPRVGCVIAHGDDVVGTGFHQRAGEPHAEVFALREA---GGSA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G TPPC EAL+ +G+++V+IA DP P V+G+G+ +L +AGI V+
Sbjct: 58 RGATAYVTLEPCAHHGRTPPCAEALVAAGVRRVVIASEDPFPQVNGRGIDRLRAAGIMVE 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
L ++ A E+N GFFSR++RG P+VR+K+A SLD +T+L N S+WIT + +R D W
Sbjct: 118 TSLQRETARELNAGFFSRIERGRPFVRVKLAMSLDGRTALANGESKWITGEAARADVQRW 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RARS AILTG GTVL D+PRL VR + P R+V+D LR P VL G +
Sbjct: 178 RARSSAILTGSGTVLADDPRLTVRLGDDEEFSPPLRVVLDRQLRTPPGSHVLDGSTPTLV 237
Query: 238 ------TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQL 291
+ D R E + + +DL AV+ L R NE+H+EAG L
Sbjct: 238 LHGAAASCADGRFARV-------ERMAVAARGDMIDLHAVLGLLAGRGCNEVHVEAGPTL 290
Query: 292 NTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
AL G VDELLLY++PIL+G+ A + LP + ++ +L + Q +G D R+
Sbjct: 291 CGALFAAGLVDELLLYVAPILLGDRARPLLQLPALTDMAQRWQLTLRQQQLLGADWRLQL 350
Query: 351 R 351
R
Sbjct: 351 R 351
>gi|386605633|ref|YP_006111933.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli UM146]
gi|419945582|ref|ZP_14462020.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli HM605]
gi|307628117|gb|ADN72421.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli UM146]
gi|388415185|gb|EIL75118.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli HM605]
Length = 361
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVQALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|359436818|ref|ZP_09226900.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. BSi20311]
gi|358028514|dbj|GAA63149.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudoalteromonas sp. BSi20311]
Length = 375
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/367 (40%), Positives = 213/367 (58%), Gaps = 28/367 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK ++I G+ + G HAE++AL A G +
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKNNKVIGEGFHQLAGQGHAEVNAL---AMAGENA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L +GIKKVI A+ D NP V+GKG+ L AGI V
Sbjct: 72 KGATAYVTLEPCSHYGRTPPCAEGLKAAGIKKVIAAMVDSNPQVAGKGLKILADAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N+GFF RM++G+P+V K+A+S+D KT+L N S+WIT +R D ++
Sbjct: 132 YGLLEAQARALNLGFFKRMEQGLPFVTCKMAASIDGKTALKNGQSKWITGPAARQDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTS---HQPYRIVIDSYLRIDPFFRVLK 230
RA++CAILTG TVL D+ +LNVR S+ T QP R+VIDS R+ P +
Sbjct: 192 RAQNCAILTGADTVLMDDAKLNVRPEELPYSLPTDLPLRQPVRVVIDSQNRLTPDLALFS 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHE------VIVLPNNLGKVDLQAVIIELGKRKINELH 284
I T + D H+ I +P N KVDL AV+ L + + N +
Sbjct: 252 IQSEVIIFTTKV--------DKSHQWPHFVKQIEVPENNNKVDLLAVLHTLAQLQFNNVW 303
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG L + +DE + YI+P L+G +A ++ P S+ I L F+E IG
Sbjct: 304 LEAGATLAGKMTELDLIDEFVFYIAPKLMGSDAKSLLNFPELMSMQNTINLTFNECVPIG 363
Query: 344 PDIRILA 350
D+RI A
Sbjct: 364 DDLRITA 370
>gi|432945079|ref|ZP_20141374.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE196]
gi|433041893|ref|ZP_20229428.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE117]
gi|431462987|gb|ELH43181.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE196]
gi|431560366|gb|ELI33880.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE117]
Length = 367
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|418515299|ref|ZP_13081480.1| 5-amino-6-uracil reductase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
gi|410708018|gb|EKQ66467.1| 5-amino-6-uracil reductase [Xanthomonas axonopodis pv. malvacearum
str. GSPB1386]
Length = 369
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 135/352 (38%), Positives = 220/352 (62%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFAL---RAAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+++V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLREAGIEVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+MQ +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WITS ++R D W
Sbjct: 133 SGVMQAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARADVQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ A+LTG GTV+ D+P + VR + + P R+V+D+ LR + +G ++
Sbjct: 193 RARAGAVLTGAGTVMADDPSMTVRLGEDTPVVPPLRVVLDARLRTLACRNIRQGDAPTLY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+ + +L D + + + + G+ DL AV+ L +R INE+H+E G L+ AL+
Sbjct: 253 LHGE-DVSAPLLTD--AQFLAMQLHAGRFDLTAVLALLAERGINEVHVEGGATLSGALLQ 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + ++ ++ L+ +++++G D+R+
Sbjct: 310 AGLVDELLVYMAPVLLGDTAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRL 361
>gi|381173584|ref|ZP_09882668.1| riboflavin biosynthesis protein RibD [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|390989535|ref|ZP_10259832.1| riboflavin biosynthesis protein RibD [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372555804|emb|CCF66807.1| riboflavin biosynthesis protein RibD [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|380685964|emb|CCG39155.1| riboflavin biosynthesis protein RibD [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 369
Score = 262 bits (670), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 136/352 (38%), Positives = 220/352 (62%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFAL---RAAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+++V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLREAGIEVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+MQ +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WITS ++R D W
Sbjct: 133 SGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARADVQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTV+ D+P + VR + + P R+V+D+ LR + +G ++
Sbjct: 193 RARAGAILTGAGTVMADDPSMTVRLGEDTPVVPPLRVVLDAGLRTLACRNIRQGDAPTLY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+ + +L D + + + + G+ DL AV+ L +R INE+H+E G L+ AL+
Sbjct: 253 LHGE-DVSAPLLTD--AQFLAMQLHAGRFDLTAVLALLAERGINEVHVEGGATLSGALLQ 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + ++ ++ L+ +++++G D+R+
Sbjct: 310 AGLVDELLVYMAPVLLGDTAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRL 361
>gi|332141886|ref|YP_004427624.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
'Deep ecotype']
gi|410862290|ref|YP_006977524.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii AltDE1]
gi|327551908|gb|AEA98626.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
'Deep ecotype']
gi|410819552|gb|AFV86169.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii AltDE1]
Length = 379
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 151/364 (41%), Positives = 215/364 (59%), Gaps = 18/364 (4%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKE-KRIISCGYTKSPGGNHAEIDALLNAA-AQGY 57
M A+Q A K +SPNPRVGCVIV E +++ GY G HAE+ AL AA A+
Sbjct: 13 MAKAIQLANKGRFTTSPNPRVGCVIVDEDSQLLGQGYHIQAGTPHAEVHALRQAAHARSE 72
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+T Y+TLEPCS+FG TPPC +AL+++ + +V+IA+ DPNP V G G++ L AGI
Sbjct: 73 GAKGATAYVTLEPCSHFGRTPPCAKALVEAQVARVVIAMTDPNPNVCGNGISMLQEAGIE 132
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V +M EA +N GF RM G P+VR+K+ S+D K +L N SQWIT+ E+R D
Sbjct: 133 VVSEVMAAEAAALNPGFIKRMLTGKPFVRVKLGISVDGKIALQNGVSQWITTPEARRDVQ 192
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRS---------IKTSHQPYRIVIDSYLRIDPFFRV 228
+RA+SC +LTG GTV DNP L VR ++ QP R+V+DS + F
Sbjct: 193 HYRAQSCVVLTGSGTVKADNPSLLVRGKEAQFDDYPLEHVRQPARVVVDSKSTLSRDF-A 251
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
L G+ FTAT + + + L GK+DL A+++ LG ++ NE+ +EAG
Sbjct: 252 LFNDGNMTFTAT----SQAHPDTASQHYLQLDEKDGKLDLHALMLALGDKQFNEVWVEAG 307
Query: 289 YQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
L AL+ EG VDEL+ Y +P L+G+ +M LP +L++ I L E +++G DI+
Sbjct: 308 PGLAGALLQEGLVDELICYQAPKLLGDKGVSMVNLPAFTALNQSISLSLIENRQVGNDIK 367
Query: 348 ILAR 351
++ R
Sbjct: 368 LIFR 371
>gi|110640675|ref|YP_668403.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 536]
gi|306813120|ref|ZP_07447313.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli NC101]
gi|386637827|ref|YP_006104625.1| riboflavin biosynthesis protein RibD [Escherichia coli ABU 83972]
gi|419915502|ref|ZP_14433867.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli KD1]
gi|110342267|gb|ABG68504.1| riboflavin biosynthesis protein RibD [Escherichia coli 536]
gi|305853883|gb|EFM54322.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli NC101]
gi|307552319|gb|ADN45094.1| riboflavin biosynthesis protein RibD [Escherichia coli ABU 83972]
gi|388383846|gb|EIL45594.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli KD1]
Length = 361
Score = 262 bits (669), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|432600930|ref|ZP_19837185.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE66]
gi|432859069|ref|ZP_20085243.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE146]
gi|432873075|ref|ZP_20092773.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE147]
gi|431143977|gb|ELE45685.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE66]
gi|431405176|gb|ELG88419.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE147]
gi|431408124|gb|ELG91316.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE146]
Length = 367
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|417139412|ref|ZP_11982834.1| riboflavin biosynthesis protein RibD [Escherichia coli 97.0259]
gi|417306912|ref|ZP_12093792.1| Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Escherichia coli PCN033]
gi|338771488|gb|EGP26228.1| Bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Escherichia coli PCN033]
gi|386157140|gb|EIH13482.1| riboflavin biosynthesis protein RibD [Escherichia coli 97.0259]
Length = 367
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI + + +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAADVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|293392571|ref|ZP_06636891.1| riboflavin biosynthesis protein RibD [Serratia odorifera DSM 4582]
gi|291424973|gb|EFE98182.1| riboflavin biosynthesis protein RibD [Serratia odorifera DSM 4582]
Length = 370
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 221/362 (61%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L ++PNP VGCVIV++ +I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTAPNPNVGCVIVRDGQIVGEGYHLRAGEPHAEVHALRMA---GKRA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V+
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALIDAGVSRVVAAMQDPNPQVAGRGLYKLQQAGIEVR 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P+V++K+ +SLD T++ + SQWITS ++R D
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYVQLKLGASLDGCTAMASGESQWITSPQARQDVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR + S+ QP RI++D + R+ P +
Sbjct: 185 RAESAAILSTSATVLADDPSLTVRWDELDAETQRSYPRENLRQPLRIILDGHNRVTPQHK 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G+ + A P + +++ E + P + G +DL ++++L KR++N + +EA
Sbjct: 245 LIQQPGTT-WLARLQPDQGLWPQNV--EQLQFPAHGGGIDLVVMMMQLAKRQVNSIWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G +L+ AL+ G VDEL+LYI+P L+G+ + LP L + F E++++GPD+
Sbjct: 302 GARLSGALLQAGLVDELILYIAPKLLGDNGRGLCHLPGLEQLIDAPEFVFSEVRQVGPDL 361
Query: 347 RI 348
R+
Sbjct: 362 RL 363
>gi|91209482|ref|YP_539468.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli UTI89]
gi|117622675|ref|YP_851588.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli APEC O1]
gi|218557323|ref|YP_002390236.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli S88]
gi|237707592|ref|ZP_04538073.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
sp. 3_2_53FAA]
gi|386598129|ref|YP_006099635.1| riboflavin biosynthesis protein RibD [Escherichia coli IHE3034]
gi|417082879|ref|ZP_11951048.1| riboflavin biosynthesis protein [Escherichia coli cloneA_i1]
gi|422356309|ref|ZP_16436998.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 110-3]
gi|422748519|ref|ZP_16802432.1| riboflavin biosynthesis protein RibD [Escherichia coli H252]
gi|422753067|ref|ZP_16806894.1| riboflavin biosynthesis protein RibD [Escherichia coli H263]
gi|422838936|ref|ZP_16886908.1| riboflavin biosynthesis protein ribD [Escherichia coli H397]
gi|432356758|ref|ZP_19600005.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE4]
gi|432361165|ref|ZP_19604362.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE5]
gi|432572409|ref|ZP_19808900.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE55]
gi|432586713|ref|ZP_19823085.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE58]
gi|432596299|ref|ZP_19832588.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE62]
gi|432753211|ref|ZP_19987779.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE22]
gi|432777266|ref|ZP_20011520.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE59]
gi|432786062|ref|ZP_20020230.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE65]
gi|432819733|ref|ZP_20053447.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE118]
gi|432825862|ref|ZP_20059519.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE123]
gi|433003940|ref|ZP_20192378.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE227]
gi|433011148|ref|ZP_20199553.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE229]
gi|433152558|ref|ZP_20337528.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE176]
gi|433162228|ref|ZP_20346993.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE179]
gi|433167203|ref|ZP_20351879.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE180]
gi|91071056|gb|ABE05937.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Escherichia coli UTI89]
gi|115511799|gb|ABI99873.1| bifunctional pyrimidine deaminase/reductase [Escherichia coli APEC
O1]
gi|218364092|emb|CAR01757.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli S88]
gi|226898802|gb|EEH85061.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
sp. 3_2_53FAA]
gi|294490690|gb|ADE89446.1| riboflavin biosynthesis protein RibD [Escherichia coli IHE3034]
gi|315289871|gb|EFU49261.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 110-3]
gi|323952974|gb|EGB48842.1| riboflavin biosynthesis protein RibD [Escherichia coli H252]
gi|323958607|gb|EGB54310.1| riboflavin biosynthesis protein RibD [Escherichia coli H263]
gi|355353063|gb|EHG02235.1| riboflavin biosynthesis protein [Escherichia coli cloneA_i1]
gi|371611407|gb|EHN99929.1| riboflavin biosynthesis protein ribD [Escherichia coli H397]
gi|430879568|gb|ELC02899.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE4]
gi|430891400|gb|ELC13936.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE5]
gi|431110747|gb|ELE14664.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE55]
gi|431123993|gb|ELE26647.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE58]
gi|431133966|gb|ELE35932.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE62]
gi|431305592|gb|ELF93913.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE22]
gi|431330840|gb|ELG18104.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE59]
gi|431341993|gb|ELG28989.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE65]
gi|431370735|gb|ELG56528.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE118]
gi|431375246|gb|ELG60590.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE123]
gi|431517261|gb|ELH94783.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE227]
gi|431519360|gb|ELH96812.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE229]
gi|431678614|gb|ELJ44610.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE176]
gi|431692266|gb|ELJ57704.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE179]
gi|431694158|gb|ELJ59543.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE180]
Length = 367
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVQALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|422974734|ref|ZP_16976435.1| riboflavin biosynthesis protein RibD [Escherichia coli TA124]
gi|371595494|gb|EHN84343.1| riboflavin biosynthesis protein RibD [Escherichia coli TA124]
Length = 367
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|331671959|ref|ZP_08372755.1| riboflavin biosynthesis protein RibD [Escherichia coli TA280]
gi|331070948|gb|EGI42307.1| riboflavin biosynthesis protein RibD [Escherichia coli TA280]
Length = 367
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + H QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQHNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTH-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|386742760|ref|YP_006215939.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Providencia stuartii MRSN 2154]
gi|384479453|gb|AFH93248.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Providencia stuartii MRSN 2154]
Length = 371
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 216/366 (59%), Gaps = 21/366 (5%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K +SPNP VGCVIV++ I+ GY + G HAE+ AL A G
Sbjct: 9 MARALELAQKGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMA---GEKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+++V+ A+ DPNP V+G+G+ L AGI
Sbjct: 66 KGATAYVTLEPCSHHGRTPPCAEALINAGVRRVVAAMQDPNPQVAGRGLYMLSQAGIETA 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ +EA +N GF RM+ P+V++K+A+SLD KT+L + S+WITS +R D +
Sbjct: 126 SGVLMEEAESLNRGFLKRMRTAFPYVQLKLAASLDGKTALESGESKWITSAAARQDVQVL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL DNP L VR T QP RIV+D++ R+ +
Sbjct: 186 RAQASAILSTSSTVLADNPSLTVRWNELPAEIQAVYPQSTLRQPIRIVLDNHNRVTAEHK 245
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
V + G C + P + + G E + +P++ +DL ++++L KR +N + +E
Sbjct: 246 VTQLAGECWLVRSQ-PEPDAVWQ--GQVEQLAIPSDDNGIDLVILMMQLAKRNVNSVWVE 302
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L +L+ G VDEL++YI+P L+G+ A + +P L K +F ++QK+G D
Sbjct: 303 AGPILAGSLLKLGLVDELIVYIAPKLLGDTARGLVNIPALAHLSDAQKFEFTDVQKVGDD 362
Query: 346 IRILAR 351
+R+ R
Sbjct: 363 LRVRLR 368
>gi|423127724|ref|ZP_17115403.1| riboflavin biosynthesis protein RibD [Klebsiella oxytoca 10-5250]
gi|376394763|gb|EHT07413.1| riboflavin biosynthesis protein RibD [Klebsiella oxytoca 10-5250]
Length = 367
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 143/352 (40%), Positives = 215/352 (61%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ +I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGKIVGEGFHYRAGEPHAEVHALRMA---GEKAQGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L G+ V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGVDVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPYIQLKMGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + + QP RIVIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWDELNADTQALYPQENLRQPLRIVIDSRNRVTPQHRIVEQAGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F T +R+ E + +++P + G++DL +++ LGK+++N + +EAG L AL
Sbjct: 252 LFARTRED-ERQWPESV--RTLLVPEHNGRLDLVVLMMLLGKQQMNTIWVEAGPTLAGAL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G +A + LP L++ KF+EI+ +GPDI
Sbjct: 309 LEAGLVDELIVYIAPKLLGSDARGLCVLPGLEKLEQAPHFKFNEIRHVGPDI 360
>gi|333898884|ref|YP_004472757.1| riboflavin biosynthesis protein RibD [Pseudomonas fulva 12-X]
gi|333114149|gb|AEF20663.1| riboflavin biosynthesis protein RibD [Pseudomonas fulva 12-X]
Length = 372
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 211/365 (57%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 9 MARALELARKGLYSTHPNPRVGCVIVRDGKIVGEGWHAKAGEPHAEVHALRQA---GDKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +GI +V+ A+ DPNP V+G+G+ +L++AGI+V+
Sbjct: 66 RGATAYVTLEPCSHHGRTPPCADALIAAGITRVVAAMQDPNPEVAGRGLLRLMNAGIAVQ 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ EA +N GF RM+ G+P VR+K+A SLD +T++ + SQWIT +R
Sbjct: 126 GGVLGAEARALNAGFIKRMETGLPLVRVKLAMSLDGRTAMASGESQWITGPAARAAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RARS +L+G T+L D RL VR ++ P R+++D LR+ PF
Sbjct: 186 RARSSVVLSGADTLLADGARLTVRPDELGLGAEMTALAQVRPPLRVLVDGRLRVPLSAPF 245
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ G + R +D GHE++ +P + G VDL+ +++EL R NE+ +
Sbjct: 246 FQA----GPALVATCAAATSRCRYQDDGHELLAIPGSSGHVDLRKLLVELAARGANEVLV 301
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+++P +G + P + + LK +++ +G D
Sbjct: 302 EAGPKLAGAFARLGLVDEYQLFVAPKFLGSSARPLLDLPLARMAEAPSLKIVDMRAVGDD 361
Query: 346 IRILA 350
RI+A
Sbjct: 362 WRIVA 366
>gi|301049614|ref|ZP_07196565.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 185-1]
gi|300298607|gb|EFJ54992.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 185-1]
Length = 367
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPY------------RIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQPQGLSPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|418521007|ref|ZP_13087053.1| 5-amino-6-uracil reductase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
gi|410702983|gb|EKQ61480.1| 5-amino-6-uracil reductase [Xanthomonas axonopodis pv. malvacearum
str. GSPB2388]
Length = 369
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 137/357 (38%), Positives = 218/357 (61%), Gaps = 20/357 (5%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFAL---RAAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+++V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLREAGIEVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+MQ +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WITS ++R D W
Sbjct: 133 SGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARADVQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTV+ D+P + VR + + P R+V+D+ LR + +G ++
Sbjct: 193 RARAGAILTGAGTVMADDPSMTVRLGEDTPVVPPLRVVLDARLRTLACRNIRQGDAPTLY 252
Query: 238 -----TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLN 292
+ LP + L + + G+ DL AV+ L +R INE+H+E G L+
Sbjct: 253 LHGEDVSAPLPTDAQFL--------AMQLHAGRFDLTAVLALLAERGINEVHVEGGATLS 304
Query: 293 TALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
AL+ G VDELL+Y++P+L+G+ A + ++ ++ L+ +++++G D+R+
Sbjct: 305 GALLQAGLVDELLVYMAPVLLGDTAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRL 361
>gi|26246419|ref|NP_752458.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli CFT073]
gi|191173514|ref|ZP_03035041.1| riboflavin biosynthesis protein RibD [Escherichia coli F11]
gi|218688277|ref|YP_002396489.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli ED1a]
gi|222155204|ref|YP_002555343.1| riboflavin biosynthesis protein ribD [Escherichia coli LF82]
gi|227884578|ref|ZP_04002383.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 83972]
gi|300988034|ref|ZP_07178514.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 45-1]
gi|300997399|ref|ZP_07181739.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 200-1]
gi|331645587|ref|ZP_08346691.1| riboflavin biosynthesis protein RibD [Escherichia coli M605]
gi|386617907|ref|YP_006137487.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Escherichia coli NA114]
gi|386628001|ref|YP_006147721.1| protein RibD [Escherichia coli str. 'clone D i2']
gi|386632921|ref|YP_006152640.1| protein RibD [Escherichia coli str. 'clone D i14']
gi|387615730|ref|YP_006118752.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O83:H1 str. NRG 857C]
gi|387828427|ref|YP_003348364.1| pyrimidine deaminase/reductase [Escherichia coli SE15]
gi|417288493|ref|ZP_12075778.1| riboflavin biosynthesis protein RibD [Escherichia coli TW07793]
gi|417660990|ref|ZP_12310571.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
coli AA86]
gi|419699328|ref|ZP_14226944.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli SCI-07]
gi|422363054|ref|ZP_16443602.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 153-1]
gi|422378046|ref|ZP_16458269.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 60-1]
gi|422378651|ref|ZP_16458858.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 57-2]
gi|425298610|ref|ZP_18688660.1| riboflavin biosynthesis protein RibD [Escherichia coli 07798]
gi|432380042|ref|ZP_19623006.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE15]
gi|432385871|ref|ZP_19628770.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE16]
gi|432396288|ref|ZP_19639080.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE25]
gi|432405284|ref|ZP_19648007.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE28]
gi|432410483|ref|ZP_19653166.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE39]
gi|432420524|ref|ZP_19663082.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE178]
gi|432430530|ref|ZP_19672975.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE187]
gi|432435059|ref|ZP_19677460.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE188]
gi|432455342|ref|ZP_19697544.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE201]
gi|432464423|ref|ZP_19706531.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE205]
gi|432469847|ref|ZP_19711900.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE206]
gi|432494283|ref|ZP_19736101.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE214]
gi|432498658|ref|ZP_19740438.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE216]
gi|432503122|ref|ZP_19744859.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE220]
gi|432512622|ref|ZP_19749865.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE224]
gi|432522567|ref|ZP_19759706.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE230]
gi|432552422|ref|ZP_19789154.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE47]
gi|432557431|ref|ZP_19794124.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE49]
gi|432567253|ref|ZP_19803780.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE53]
gi|432582523|ref|ZP_19818933.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE57]
gi|432591533|ref|ZP_19827862.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE60]
gi|432606299|ref|ZP_19842495.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE67]
gi|432610148|ref|ZP_19846321.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE72]
gi|432615188|ref|ZP_19851323.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE75]
gi|432644849|ref|ZP_19880652.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE86]
gi|432649942|ref|ZP_19885704.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE87]
gi|432654424|ref|ZP_19890143.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE93]
gi|432693198|ref|ZP_19928413.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE162]
gi|432697731|ref|ZP_19932903.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE169]
gi|432709245|ref|ZP_19944314.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE6]
gi|432712135|ref|ZP_19947187.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE8]
gi|432721977|ref|ZP_19956904.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE17]
gi|432726523|ref|ZP_19961406.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE18]
gi|432731136|ref|ZP_19965975.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE45]
gi|432740210|ref|ZP_19974932.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE23]
gi|432744351|ref|ZP_19979056.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE43]
gi|432758196|ref|ZP_19992719.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE46]
gi|432782322|ref|ZP_20016508.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE63]
gi|432842701|ref|ZP_20076122.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE141]
gi|432893030|ref|ZP_20105135.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE165]
gi|432902747|ref|ZP_20112427.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE194]
gi|432917546|ref|ZP_20122077.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE173]
gi|432924851|ref|ZP_20126990.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE175]
gi|432942287|ref|ZP_20139629.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE183]
gi|432970591|ref|ZP_20159469.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE207]
gi|432977136|ref|ZP_20165961.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE209]
gi|432979918|ref|ZP_20168699.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE211]
gi|432984106|ref|ZP_20172845.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE215]
gi|432989519|ref|ZP_20178189.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE217]
gi|432994209|ref|ZP_20182826.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE218]
gi|432998628|ref|ZP_20187168.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE223]
gi|433037350|ref|ZP_20224971.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE113]
gi|433056752|ref|ZP_20243839.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE124]
gi|433071460|ref|ZP_20258162.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE129]
gi|433076612|ref|ZP_20263178.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE131]
gi|433081361|ref|ZP_20267836.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE133]
gi|433086018|ref|ZP_20272422.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE137]
gi|433095281|ref|ZP_20281497.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE139]
gi|433099962|ref|ZP_20286074.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE145]
gi|433104549|ref|ZP_20290572.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE148]
gi|433109666|ref|ZP_20295546.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE150]
gi|433114365|ref|ZP_20300181.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE153]
gi|433118961|ref|ZP_20304675.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE157]
gi|433123982|ref|ZP_20309573.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE160]
gi|433138043|ref|ZP_20323330.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE167]
gi|433142976|ref|ZP_20328155.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE168]
gi|433147871|ref|ZP_20332937.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE174]
gi|433181944|ref|ZP_20366247.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE85]
gi|433187219|ref|ZP_20371348.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE88]
gi|433206564|ref|ZP_20390265.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE97]
gi|433211344|ref|ZP_20394959.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE99]
gi|442606680|ref|ZP_21021475.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
coli Nissle 1917]
gi|26106817|gb|AAN79002.1|AE016756_185 Riboflavin biosynthesis protein ribD [Escherichia coli CFT073]
gi|190906223|gb|EDV65835.1| riboflavin biosynthesis protein RibD [Escherichia coli F11]
gi|218425841|emb|CAR06647.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli ED1a]
gi|222032209|emb|CAP74948.1| riboflavin biosynthesis protein ribD [Escherichia coli LF82]
gi|227838664|gb|EEJ49130.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli 83972]
gi|281177584|dbj|BAI53914.1| pyrimidine deaminase/reductase [Escherichia coli SE15]
gi|300304218|gb|EFJ58738.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 200-1]
gi|300407586|gb|EFJ91124.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 45-1]
gi|312944991|gb|ADR25818.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O83:H1 str. NRG 857C]
gi|315294207|gb|EFU53558.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 153-1]
gi|324010091|gb|EGB79310.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 57-2]
gi|324010674|gb|EGB79893.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 60-1]
gi|330910208|gb|EGH38718.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
coli AA86]
gi|331045749|gb|EGI17875.1| riboflavin biosynthesis protein RibD [Escherichia coli M605]
gi|333968408|gb|AEG35213.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Escherichia coli NA114]
gi|355418900|gb|AER83097.1| RibD [Escherichia coli str. 'clone D i2']
gi|355423820|gb|AER88016.1| RibD [Escherichia coli str. 'clone D i14']
gi|380349343|gb|EIA37615.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli SCI-07]
gi|386247285|gb|EII93458.1| riboflavin biosynthesis protein RibD [Escherichia coli TW07793]
gi|408221613|gb|EKI45546.1| riboflavin biosynthesis protein RibD [Escherichia coli 07798]
gi|430909920|gb|ELC31278.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE16]
gi|430912021|gb|ELC33272.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE15]
gi|430918670|gb|ELC39671.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE25]
gi|430932780|gb|ELC53199.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE28]
gi|430938419|gb|ELC58660.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE39]
gi|430947689|gb|ELC67386.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE178]
gi|430956152|gb|ELC74828.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE187]
gi|430966638|gb|ELC84001.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE188]
gi|430985214|gb|ELD01820.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE201]
gi|430997174|gb|ELD13441.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE205]
gi|430999914|gb|ELD15988.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE206]
gi|431027799|gb|ELD40844.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE214]
gi|431032252|gb|ELD44963.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE216]
gi|431042124|gb|ELD52616.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE220]
gi|431044942|gb|ELD55197.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE224]
gi|431054687|gb|ELD64256.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE230]
gi|431087054|gb|ELD93059.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE47]
gi|431094484|gb|ELE00116.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE49]
gi|431103086|gb|ELE07756.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE53]
gi|431119539|gb|ELE22538.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE57]
gi|431132977|gb|ELE34975.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE60]
gi|431140521|gb|ELE42287.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE67]
gi|431151461|gb|ELE52476.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE72]
gi|431158128|gb|ELE58749.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE75]
gi|431184330|gb|ELE84088.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE86]
gi|431193313|gb|ELE92649.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE87]
gi|431195609|gb|ELE94578.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE93]
gi|431237340|gb|ELF32340.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE162]
gi|431246925|gb|ELF41168.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE169]
gi|431252966|gb|ELF46480.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE6]
gi|431259650|gb|ELF52013.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE8]
gi|431268339|gb|ELF59813.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE17]
gi|431276631|gb|ELF67651.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE18]
gi|431278540|gb|ELF69530.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE45]
gi|431286339|gb|ELF77165.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE23]
gi|431295805|gb|ELF85537.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE43]
gi|431311982|gb|ELG00130.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE46]
gi|431332034|gb|ELG19277.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE63]
gi|431397229|gb|ELG80685.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE141]
gi|431425482|gb|ELH07552.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE165]
gi|431437392|gb|ELH18902.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE194]
gi|431447419|gb|ELH28151.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE173]
gi|431449510|gb|ELH30083.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE175]
gi|431454755|gb|ELH35113.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE183]
gi|431482240|gb|ELH61943.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE209]
gi|431485728|gb|ELH65385.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE207]
gi|431496539|gb|ELH76122.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE211]
gi|431498764|gb|ELH77949.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE217]
gi|431506243|gb|ELH84841.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE215]
gi|431509543|gb|ELH87792.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE218]
gi|431514197|gb|ELH92039.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE223]
gi|431555526|gb|ELI29366.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE113]
gi|431574195|gb|ELI46977.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE124]
gi|431593647|gb|ELI63939.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE129]
gi|431601189|gb|ELI70706.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE131]
gi|431606006|gb|ELI75390.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE133]
gi|431610180|gb|ELI79481.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE137]
gi|431619851|gb|ELI88748.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE139]
gi|431622828|gb|ELI91513.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE145]
gi|431631743|gb|ELJ00049.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE150]
gi|431634573|gb|ELJ02814.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE148]
gi|431636865|gb|ELJ04984.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE153]
gi|431649310|gb|ELJ16668.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE157]
gi|431650085|gb|ELJ17422.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE160]
gi|431665012|gb|ELJ31739.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE167]
gi|431666664|gb|ELJ33291.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE168]
gi|431676764|gb|ELJ42847.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE174]
gi|431709765|gb|ELJ74213.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE88]
gi|431711840|gb|ELJ76147.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE85]
gi|431733120|gb|ELJ96561.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE97]
gi|431735999|gb|ELJ99341.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE99]
gi|441711987|emb|CCQ07452.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Escherichia
coli Nissle 1917]
Length = 367
Score = 261 bits (668), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|261341007|ref|ZP_05968865.1| riboflavin biosynthesis protein RibD [Enterobacter cancerogenus
ATCC 35316]
gi|288316872|gb|EFC55810.1| riboflavin biosynthesis protein RibD [Enterobacter cancerogenus
ATCC 35316]
Length = 367
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 143/348 (41%), Positives = 211/348 (60%), Gaps = 19/348 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC EALI +G+ +V+ ++ DPNP V+G+G+ +L GI V GLM ++A +N
Sbjct: 76 SHHGRTPPCCEALIAAGVSRVVASMQDPNPQVAGRGLYRLQQEGIDVSHGLMMQDAEALN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ N SQWITS ++R D RA+S AILT
Sbjct: 136 KGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQRLRAQSHAILTSSE 195
Query: 192 TVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + + QP RIVIDS R+ P R++ G +F
Sbjct: 196 TVLADDPAMTVRWDELNADTQALYPQENLRQPLRIVIDSQNRVTPEHRIVHQPGETLFAR 255
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
T R+ E G I++P + G +DL +++ LGK+++N + +EAG L AL+ G
Sbjct: 256 TK-DDSRQWPE--GVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVEAGPTLAGALLQAG 312
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
VDEL++Y++P+L+G +A +F LP L +LKF EI+ +GPD+
Sbjct: 313 LVDELIVYVAPVLLGNDARGLFVLPGLEKLADAPQLKFSEIRPVGPDV 360
>gi|366160341|ref|ZP_09460203.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia sp. TW09308]
gi|432371188|ref|ZP_19614252.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE11]
gi|430900401|gb|ELC22420.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE11]
Length = 367
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 215/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ +SLD +T++ N SQWITS ++R D
Sbjct: 124 HGLMMSEAEPLNKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-DDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|89093485|ref|ZP_01166433.1| riboflavin biosynthesis protein RibD [Neptuniibacter caesariensis]
gi|89082175|gb|EAR61399.1| riboflavin biosynthesis protein RibD [Oceanospirillum sp. MED92]
Length = 379
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 140/349 (40%), Positives = 216/349 (61%), Gaps = 16/349 (4%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY-NSTVYITLEPC 71
++PNPRVGCV+VK++ I+ G+ G HAE+ NA AQ D+ +T Y+TLEPC
Sbjct: 26 TTNPNPRVGCVLVKDEVIVGEGFHFRAGEGHAEV----NAMAQAGDLAKGATAYVTLEPC 81
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ +V+ A+ DPNP V+G+G+ L SAGIS + GL++ EA +N
Sbjct: 82 SHYGRTPPCAEGLIKAGVNRVVCAMVDPNPQVAGRGIQMLESAGISAESGLLEAEARALN 141
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V +KIA+SLD +T++ + S+WIT +R+D RARS AILTG+
Sbjct: 142 PGFIKRMETGLPFVSLKIATSLDGRTAMASGESKWITGAAARSDVQKLRARSSAILTGVE 201
Query: 192 TVLKDNPRLNVRSIK---------TSHQPYRIVIDSYLRIDPFFRVL-KGGGSCIFTATD 241
++L DN L VR+ + QP R+V+DS LR +L + G + I T +
Sbjct: 202 SILTDNSALTVRAEQLGLAQAEEIVKQQPLRVVLDSNLRTPIDASILSQPGRTLIATISK 261
Query: 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIEL-GKRKINELHIEAGYQLNTALILEGC 300
+ + L+ G EVI +P N G+VDL A++ L G+ + NEL +E G L A I
Sbjct: 262 DAVVIEKLQAAGAEVIQMPANQGRVDLVALLKHLAGEEQCNELLVETGATLAGAFIDAKL 321
Query: 301 VDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
VD+L LY++ L+G + P + ++++LK +++ +G D++++
Sbjct: 322 VDQLHLYMAMTLMGSSARPAFQLPLAKMSEQVRLKRMDMRMLGDDMKLI 370
>gi|384426535|ref|YP_005635892.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv.
raphani 756C]
gi|341935635|gb|AEL05774.1| riboflavin biosynthesis protein RibD [Xanthomonas campestris pv.
raphani 756C]
Length = 364
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 134/340 (39%), Positives = 206/340 (60%), Gaps = 11/340 (3%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNP VGCVIV++ + G+ + GG HAE+ AL A G +T Y+TLEPC+
Sbjct: 24 TTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR---AAGEQARGATAYVTLEPCA 80
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC ALI +G+ +V+ A+ DP P V+G G L AGI V G+M+ +A +N
Sbjct: 81 HYGRTPPCALALIAAGVTRVVAAMADPFPQVNGGGFTLLRDAGIQVHSGVMEAQARALNQ 140
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SR++RG PWVR+K+ +SLD +T++ + S+WIT ++R D WRAR+ ILTG GT
Sbjct: 141 GFLSRVERGRPWVRVKLGASLDGRTAMASGESKWITGADARADVQRWRARAGVILTGAGT 200
Query: 193 VLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIFT-ATDLPMKRKIL 249
VL D+P + VR + + P R+V+D+ LR + +G ++ D+
Sbjct: 201 VLADDPSMTVRLGEDTPCVPPLRVVLDAGLRTLACANIRQGDAPTLYLHGADVTAPAFD- 259
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
G E +P + G+ DL AV+ L +R INE+H+EAG L+ AL+ G VDELL+Y++
Sbjct: 260 ---GAEFAAMPLHAGRFDLAAVLASLAERGINEVHVEAGATLSGALLQAGLVDELLVYMA 316
Query: 310 PILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
P+L+GE A + ++ ++ L+ +++ IG D+R+
Sbjct: 317 PVLLGETARPLLAGLGIDTMAQRHALQLLDVRHIGQDLRL 356
>gi|71276434|ref|ZP_00652710.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Xylella fastidiosa Dixon]
gi|170730982|ref|YP_001776415.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase,
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Xylella fastidiosa M12]
gi|71162750|gb|EAO12476.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Xylella fastidiosa Dixon]
gi|167965775|gb|ACA12785.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase,
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Xylella fastidiosa M12]
Length = 364
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 142/343 (41%), Positives = 208/343 (60%), Gaps = 10/343 (2%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNP VGCVIV + ++ G+ + G HAE+ AL A G +T Y+TLEPC+
Sbjct: 25 TTRPNPMVGCVIVHDGEVVGEGWHQRAGDPHAEVFAL---RAAGDCARGATAYVTLEPCA 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC ALI +G+++V+ A+ DP PLV+G GV L +AG++V+ GLM+ +A +N
Sbjct: 82 HSGRTPPCAMALIDAGVRRVVAAMVDPFPLVNGGGVTLLRAAGVTVEHGLMEAQARALNR 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SR++RG PWVR+K+ SSLD +T+L + S+WIT + +R D WRAR+ AILTG GT
Sbjct: 142 GFLSRVERGRPWVRIKLGSSLDGRTALASGESKWITGEAARADVQRWRARASAILTGAGT 201
Query: 193 VLKDNPRLNVRSIKTSHQ---PYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKIL 249
VL D+P L VR P R+V+DS LR +V G ++ + +L
Sbjct: 202 VLADDPALTVRLGGEEGAFLPPLRVVLDSRLRSLSCVKVRDGTAPTLYL-HGFGVTSPVL 260
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
+ + + +DL AV+ LG+R INE+ +EAG L AL+ G VDELL+YI+
Sbjct: 261 QHVDFSEV--QQRDAGLDLGAVLRLLGERGINEVQVEAGATLCGALLHAGLVDELLIYIA 318
Query: 310 PILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
P+L+G+ A + +D+ I LK E+ ++G D+R+L R
Sbjct: 319 PLLLGDTARPLLAGLDIGRMDQCIGLKVLEVAQVGNDLRLLLR 361
>gi|325924396|ref|ZP_08185931.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
gardneri ATCC 19865]
gi|325545120|gb|EGD16439.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
gardneri ATCC 19865]
Length = 364
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 137/352 (38%), Positives = 219/352 (62%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ A G
Sbjct: 11 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGAHAEV---FALRAAGALA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+++V+ A+ DP P V+G G A L AGI V
Sbjct: 68 RGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLREAGIEVL 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+MQ +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WIT ++R D W
Sbjct: 128 SGVMQAQARVLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGADARADVQRW 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTVL D+P + VR + P R+V+D+ LR + +G ++
Sbjct: 188 RARAGAILTGAGTVLADDPSMTVRLGDDTPFVPPLRVVLDAGLRTLACENIRQGNAPTLY 247
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
D + R + D+ + + +P + G+ DL AV+ L +R INE+H+EAG L+ AL+
Sbjct: 248 VHGDDVLPRSL--DVA-QFVAMPLHAGRFDLSAVLASLAERGINEVHVEAGATLSGALLH 304
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + ++ ++ L+ +++++G D+R+
Sbjct: 305 AGLVDELLVYMAPVLLGDTARPLLAGLGIETMAQRHPLQLLDVRQLGQDLRL 356
>gi|238787980|ref|ZP_04631776.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
frederiksenii ATCC 33641]
gi|238723928|gb|EEQ15572.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia
frederiksenii ATCC 33641]
Length = 369
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 224/365 (61%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L +SPNP VGCV+V++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPQVAGRGLYKLKQAGIAVD 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P++++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK------------TSHQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR + T QP RI++DS+ R+ P +
Sbjct: 185 RAESSAILSTSATVLADDPSLTVRWQELDTETQARYPQDTLRQPTRIILDSHNRVTPEHK 244
Query: 228 VLKGGGSCIFT---ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
V++ G+C A + P + E ++LP + VDL ++++LGKR+IN +
Sbjct: 245 VIQQEGTCWLARVEADEQPWPANV------EQLLLPRHGNGVDLVLLMMQLGKRQINSVW 298
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG QL AL+ G VDEL+LYI+P L+G +A + L L + + +F +++++G
Sbjct: 299 VEAGPQLAGALLQAGVVDELILYIAPKLLGSDARGLCQLAGLTHLSQAPEFEFSDVRQVG 358
Query: 344 PDIRI 348
PD+R+
Sbjct: 359 PDLRL 363
>gi|416334182|ref|ZP_11671175.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Escherichia coli WV_060327]
gi|320197148|gb|EFW71765.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Escherichia coli WV_060327]
Length = 367
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-DDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|422666281|ref|ZP_16726150.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
aptata str. DSM 50252]
gi|330976721|gb|EGH76762.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
aptata str. DSM 50252]
Length = 378
Score = 261 bits (667), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 217/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV+E RI+ G+ G HAE+ AL A G
Sbjct: 13 MARALEMARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI++G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGIGVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +L+G TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 250 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 306 EAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|416811845|ref|ZP_11890118.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O55:H7 str. 3256-97]
gi|416834980|ref|ZP_11901228.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. LSU-61]
gi|420296207|ref|ZP_14798304.1| riboflavin biosynthesis protein RibD [Escherichia coli TW09109]
gi|424088219|ref|ZP_17824495.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK1996]
gi|424100840|ref|ZP_17836020.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK1990]
gi|424132048|ref|ZP_17864868.1| riboflavin biosynthesis protein RibD [Escherichia coli PA10]
gi|424266112|ref|ZP_17893786.1| riboflavin biosynthesis protein RibD [Escherichia coli PA28]
gi|424466354|ref|ZP_17916563.1| riboflavin biosynthesis protein RibD [Escherichia coli PA41]
gi|424478866|ref|ZP_17928129.1| riboflavin biosynthesis protein RibD [Escherichia coli TW07945]
gi|424484933|ref|ZP_17933818.1| riboflavin biosynthesis protein RibD [Escherichia coli TW09098]
gi|424491050|ref|ZP_17939469.1| riboflavin biosynthesis protein RibD [Escherichia coli TW09195]
gi|424510628|ref|ZP_17956885.1| riboflavin biosynthesis protein RibD [Escherichia coli TW14313]
gi|424524029|ref|ZP_17968071.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4421]
gi|424567082|ref|ZP_18008015.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4448]
gi|424579227|ref|ZP_18019176.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1863]
gi|425102036|ref|ZP_18504701.1| riboflavin biosynthesis protein RibD [Escherichia coli 5.2239]
gi|425107838|ref|ZP_18510106.1| riboflavin biosynthesis protein RibD [Escherichia coli 6.0172]
gi|425141940|ref|ZP_18542247.1| riboflavin biosynthesis protein RibD [Escherichia coli 10.0869]
gi|425148258|ref|ZP_18548169.1| riboflavin biosynthesis protein RibD [Escherichia coli 88.0221]
gi|425184156|ref|ZP_18581795.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK1997]
gi|425321244|ref|ZP_18709932.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1737]
gi|425327435|ref|ZP_18715672.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1846]
gi|425333621|ref|ZP_18721355.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1847]
gi|425340044|ref|ZP_18727299.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1848]
gi|425390173|ref|ZP_18773643.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1868]
gi|425396292|ref|ZP_18779350.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1869]
gi|425415088|ref|ZP_18796738.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK523]
gi|428944892|ref|ZP_19017551.1| riboflavin biosynthesis protein RibD [Escherichia coli 88.1467]
gi|428969402|ref|ZP_19040044.1| riboflavin biosynthesis protein RibD [Escherichia coli 90.0039]
gi|428999763|ref|ZP_19068281.1| riboflavin biosynthesis protein RibD [Escherichia coli 95.0183]
gi|429018630|ref|ZP_19085423.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0428]
gi|429042701|ref|ZP_19107715.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0107]
gi|444929048|ref|ZP_21248203.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0814]
gi|444956579|ref|ZP_21274582.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.1753]
gi|444961918|ref|ZP_21279673.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.1775]
gi|320656030|gb|EFX23946.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O55:H7 str. 3256-97 TW
07815]
gi|320665156|gb|EFX32249.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. LSU-61]
gi|390650963|gb|EIN29330.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK1996]
gi|390673250|gb|EIN49498.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK1990]
gi|390708623|gb|EIN81838.1| riboflavin biosynthesis protein RibD [Escherichia coli PA10]
gi|390737230|gb|EIO08538.1| riboflavin biosynthesis protein RibD [Escherichia coli PA28]
gi|390776378|gb|EIO44324.1| riboflavin biosynthesis protein RibD [Escherichia coli PA41]
gi|390810339|gb|EIO77100.1| riboflavin biosynthesis protein RibD [Escherichia coli TW07945]
gi|390811979|gb|EIO78664.1| riboflavin biosynthesis protein RibD [Escherichia coli TW09109]
gi|390823148|gb|EIO89214.1| riboflavin biosynthesis protein RibD [Escherichia coli TW09098]
gi|390842531|gb|EIP06374.1| riboflavin biosynthesis protein RibD [Escherichia coli TW09195]
gi|390860208|gb|EIP22531.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4421]
gi|390860609|gb|EIP22914.1| riboflavin biosynthesis protein RibD [Escherichia coli TW14313]
gi|390915444|gb|EIP73959.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4448]
gi|390924994|gb|EIP82730.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1863]
gi|408116855|gb|EKH48122.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK1997]
gi|408253625|gb|EKI75216.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1737]
gi|408259754|gb|EKI80908.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1846]
gi|408268639|gb|EKI88989.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1847]
gi|408270205|gb|EKI90414.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1848]
gi|408318332|gb|EKJ34547.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1868]
gi|408331629|gb|EKJ46773.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1869]
gi|408350700|gb|EKJ64548.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK523]
gi|408558995|gb|EKK35338.1| riboflavin biosynthesis protein RibD [Escherichia coli 5.2239]
gi|408560323|gb|EKK36587.1| riboflavin biosynthesis protein RibD [Escherichia coli 6.0172]
gi|408604530|gb|EKK78104.1| riboflavin biosynthesis protein RibD [Escherichia coli 10.0869]
gi|408611127|gb|EKK84489.1| riboflavin biosynthesis protein RibD [Escherichia coli 88.0221]
gi|427217740|gb|EKV86792.1| riboflavin biosynthesis protein RibD [Escherichia coli 88.1467]
gi|427234303|gb|EKW02002.1| riboflavin biosynthesis protein RibD [Escherichia coli 90.0039]
gi|427271036|gb|EKW35885.1| riboflavin biosynthesis protein RibD [Escherichia coli 95.0183]
gi|427286670|gb|EKW50508.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0428]
gi|427311023|gb|EKW73243.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0107]
gi|444542635|gb|ELV21985.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0814]
gi|444582567|gb|ELV58353.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.1753]
gi|444585417|gb|ELV60992.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.1775]
Length = 361
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR----SIKTS--------HQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR ++T QP RIVIDS R+ P
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHH 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|440719582|ref|ZP_20900008.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae
BRIP34876]
gi|440727121|ref|ZP_20907362.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase,
C-terminal [Pseudomonas syringae BRIP34881]
gi|440364695|gb|ELQ01818.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase,
C-terminal [Pseudomonas syringae BRIP34881]
gi|440367718|gb|ELQ04775.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae
BRIP34876]
Length = 378
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 217/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV+E RI+ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI++G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGIGVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS-----------IKTSHQPYRIVIDSYLRI---DPF 225
RA+S +L+G TVL D RL VR+ + + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLSGADTVLADKARLTVRADELGLDAELTALAAARAPLRVLIDGRLRVPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 250 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 306 EAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|416822806|ref|ZP_11895133.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O55:H7 str. USDA 5905]
gi|320661180|gb|EFX28611.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O55:H7 str. USDA 5905]
Length = 361
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMVSGESQWITSPQARRDVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR----SIKTS--------HQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR ++T QP RIVIDS R+ P
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHH 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|415814570|ref|ZP_11506168.1| riboflavin biosynthesis protein RibD [Escherichia coli LT-68]
gi|415852318|ref|ZP_11528694.1| riboflavin biosynthesis protein RibD [Shigella sonnei 53G]
gi|323164205|gb|EFZ50012.1| riboflavin biosynthesis protein RibD [Shigella sonnei 53G]
gi|323170496|gb|EFZ56146.1| riboflavin biosynthesis protein RibD [Escherichia coli LT-68]
Length = 361
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 238 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 289
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 290 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 349
Query: 342 IGPDI 346
+GPD+
Sbjct: 350 VGPDV 354
>gi|422330669|ref|ZP_16411686.1| riboflavin biosynthesis protein RibD [Escherichia coli 4_1_47FAA]
gi|373248373|gb|EHP67803.1| riboflavin biosynthesis protein RibD [Escherichia coli 4_1_47FAA]
Length = 367
Score = 261 bits (666), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|425246937|ref|ZP_18640161.1| riboflavin biosynthesis protein RibD [Escherichia coli 5905]
gi|408174714|gb|EKI01678.1| riboflavin biosynthesis protein RibD [Escherichia coli 5905]
Length = 367
Score = 260 bits (665), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMVSGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR----SIKTS--------HQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR ++T QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|127512119|ref|YP_001093316.1| riboflavin biosynthesis protein RibD [Shewanella loihica PV-4]
gi|126637414|gb|ABO23057.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella loihica PV-4]
Length = 386
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 141/350 (40%), Positives = 209/350 (59%), Gaps = 19/350 (5%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+SPNP VGCVIV+ + ++ G+ + GG HAE+ AL A G +T Y+TLEPCS
Sbjct: 28 TTSPNPNVGCVIVQGETLVGEGFHIAAGGPHAEVHALRMA---GDKAKGATAYVTLEPCS 84
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC EALIK+ + +V++A+ DPNP VSG+G+ L AGI V+ GL Q+EA +N
Sbjct: 85 HYGRTPPCAEALIKAEVSRVVVAVTDPNPQVSGRGIKMLQDAGILVEVGLHQEEAAALNP 144
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF RM+ G+PWV +K+A+SLD KT+L N S+WIT E+R D RAR A++TGI T
Sbjct: 145 GFMKRMRSGLPWVGIKLATSLDGKTALSNGVSKWITGPEARRDVQRMRARFDAVVTGIET 204
Query: 193 VLKDNPRLNVRSIKTS-----------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATD 241
VL D+P LNVR ++ QP R+V+DS R+ ++ + + +
Sbjct: 205 VLADDPSLNVRHLELGSLSEQLTEADIRQPLRVVLDSRARLGAKAKLFETQSPVLLVSCQ 264
Query: 242 LPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
P + +V + LP++ G+V L+A++ LG ++N + +EAG L A + +G
Sbjct: 265 -PYPEAVASAWPEQVSQLQLPSDNGQVPLKALLEHLGS-QLNSVMVEAGATLAGAFMAQG 322
Query: 300 CVDELLLYISP-ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
DEL+LY +P IL G N+ LP + + + LK + + IG D R+
Sbjct: 323 LADELVLYQAPKILGGHGRNLLALPDYTEMTQLPALKLCDERAIGADRRL 372
>gi|333906668|ref|YP_004480254.1| riboflavin biosynthesis protein RibD [Marinomonas posidonica
IVIA-Po-181]
gi|333476674|gb|AEF53335.1| riboflavin biosynthesis protein RibD [Marinomonas posidonica
IVIA-Po-181]
Length = 381
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 140/363 (38%), Positives = 219/363 (60%), Gaps = 18/363 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + + PNPRVGCV+VK+ +I GY + G HAE++AL +A DV
Sbjct: 9 MAKALQLAQKGLFTTHPNPRVGCVLVKQDELIGQGYHEKAGEGHAEVNALADAK---QDV 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALIK+G+ V+ + DPNP V+G G+A+L +AGI V
Sbjct: 66 SGATAYVTLEPCSHQGKTPPCADALIKAGVACVVYGLQDPNPEVAGNGLAKLKAAGIEVI 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+++ E +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT ++R D W
Sbjct: 126 GPILEAECNALNPGFNKRMREGLPFVRVKLAMSLDGRTAMESGESQWITGGDARLDVQKW 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--------SIKTSHQPYRIVIDSYLRIDPFFRVL-K 230
RA+S AI+TGIG+VL DNP + VR KT QP R+++D+ L + P ++L
Sbjct: 186 RAQSDAIVTGIGSVLADNPSMTVRIDEQGQEVDAKTVRQPLRVIMDTALSVLPEAKILYP 245
Query: 231 GGGSCIFT--ATDLPMKRKILEDLGHEV-IVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+C+F + L+ G +V P + G++DL + +L INE+ +E
Sbjct: 246 SSQACVFAIEEEVEAEHLETLQQKGVQVKFSSPGDDGRLDLVDAMEQLADMGINEVLLET 305
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G +L + G +DE+++Y++P L+G A +F LP D + L+ ++++G D+
Sbjct: 306 GAELAGGFLQAGLIDEIIVYMAPKLLGSNARALFQLPLEVMAD-AVDLQLKSVRQVGQDL 364
Query: 347 RIL 349
R++
Sbjct: 365 RLV 367
>gi|365104924|ref|ZP_09334316.1| riboflavin biosynthesis protein RibD [Citrobacter freundii
4_7_47CFAA]
gi|363643865|gb|EHL83169.1| riboflavin biosynthesis protein RibD [Citrobacter freundii
4_7_47CFAA]
Length = 367
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 214/353 (60%), Gaps = 21/353 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G + Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GEKAQGAIAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM E
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEV 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EQLNKGFLKRMRTGFPYLQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKG-GGS 234
T TVL D+P+L VR S + S+ QP RIV+DS ++ P ++++ G +
Sbjct: 192 TSSSTVLADDPQLTVRWSELGESTQASYPQEELRQPIRIVLDSQNQVTPEHQIVQQPGET 251
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
I D P R E + + +P + G +DL ++++LGK++IN + +EAG L A
Sbjct: 252 WIVRTEDDP--RSWPETV--RSLKVPEHNGHLDLVVLMMQLGKQQINSIWVEAGPTLAGA 307
Query: 295 LILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
L+ G VDEL++Y++P L+G +A + LP L KF+EI+++GPD+
Sbjct: 308 LLQAGLVDELIVYVAPKLLGSDARGLCVLPGLEKLADAPHFKFNEIRQVGPDV 360
>gi|420345468|ref|ZP_14846900.1| riboflavin biosynthesis protein RibD [Shigella boydii 965-58]
gi|391276352|gb|EIQ35124.1| riboflavin biosynthesis protein RibD [Shigella boydii 965-58]
Length = 367
Score = 260 bits (665), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
R++S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RSQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPGHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|88801234|ref|ZP_01116773.1| riboflavin biosynthesis protein [Reinekea blandensis MED297]
gi|88776020|gb|EAR07256.1| riboflavin biosynthesis protein [Reinekea sp. MED297]
Length = 366
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 134/337 (39%), Positives = 196/337 (58%), Gaps = 5/337 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNP VGCVIV++ ++ GY + G HAE+ AL A G +T Y+TLEPCS
Sbjct: 25 TTTPNPNVGCVIVRDGELVGSGYHRKAGTPHAEVHALAEA---GSKARGATAYVTLEPCS 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC +ALIK+G+ V+ A+ DPNP V+G+G+ +L +AGI V G++ EA +N
Sbjct: 82 HYGKTPPCADALIKAGVANVVCAMTDPNPQVAGQGLEKLRNAGIEVISGVLNAEAERLNR 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF RM+ G PW+ K+A+SLD T+L N SQWIT E+R D RA SCA++TG+ T
Sbjct: 142 GFLKRMRTGRPWLVAKMAASLDGGTALANGDSQWITGPEARQDVQSGRADSCAVVTGVET 201
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLR--IDPFFRVLKGGGSCIFTATDLPMKRKILE 250
V+ DNP LNVR QP RI++D+ R + L G I A P+ + L+
Sbjct: 202 VVADNPSLNVRLDGADRQPVRIILDTQARTPVPSTIVTLPGRTVIIHGAQANPLSLERLQ 261
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
G E++ + +DL A + G++ N + +EAG L A +G +DEL LY +P
Sbjct: 262 AAGFELVEMATANDHIDLPAFLSWCGQQAFNRVWLEAGATLTGAFAEQGLLDELWLYQAP 321
Query: 311 ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
I++G A SL + + +++ +G DIR
Sbjct: 322 IMLGGATRPVADFRLDSLKQAHRFDVDDVRFVGKDIR 358
>gi|15800143|ref|NP_286155.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. EDL933]
gi|15829721|ref|NP_308494.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. Sakai]
gi|168749873|ref|ZP_02774895.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4113]
gi|168756953|ref|ZP_02781960.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4401]
gi|168761617|ref|ZP_02786624.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4501]
gi|168768362|ref|ZP_02793369.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4486]
gi|168776283|ref|ZP_02801290.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4196]
gi|168783277|ref|ZP_02808284.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4076]
gi|168786258|ref|ZP_02811265.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC869]
gi|168800294|ref|ZP_02825301.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC508]
gi|195938521|ref|ZP_03083903.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. EC4024]
gi|208806179|ref|ZP_03248516.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4206]
gi|208815640|ref|ZP_03256819.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4045]
gi|208822832|ref|ZP_03263150.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4042]
gi|209395713|ref|YP_002269058.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. EC4115]
gi|217325532|ref|ZP_03441616.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
TW14588]
gi|254791597|ref|YP_003076434.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. TW14359]
gi|261223893|ref|ZP_05938174.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Escherichia coli O157:H7 str. FRIK2000]
gi|261256393|ref|ZP_05948926.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Escherichia coli O157:H7 str. FRIK966]
gi|291281320|ref|YP_003498138.1| bifunctional deaminase-reductase, C-terminal:riboflavin
biosynthesis protein RibD [Escherichia coli O55:H7 str.
CB9615]
gi|387505428|ref|YP_006157684.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O55:H7 str. RM12579]
gi|387881009|ref|YP_006311311.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli Xuzhou21]
gi|416312966|ref|ZP_11657901.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
1044]
gi|416316782|ref|ZP_11659914.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Escherichia coli O157:H7 str. EC1212]
gi|416325650|ref|ZP_11666058.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Escherichia coli O157:H7 str. 1125]
gi|416780480|ref|ZP_11876866.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. G5101]
gi|416791631|ref|ZP_11881764.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H- str. 493-89]
gi|416803274|ref|ZP_11886625.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H- str. H 2687]
gi|419043518|ref|ZP_13590492.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC3A]
gi|419049012|ref|ZP_13595931.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC3B]
gi|419055066|ref|ZP_13601924.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC3C]
gi|419060659|ref|ZP_13607444.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC3D]
gi|419066539|ref|ZP_13613220.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC3E]
gi|419073374|ref|ZP_13618947.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC3F]
gi|419078725|ref|ZP_13624210.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC4A]
gi|419084375|ref|ZP_13629791.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC4B]
gi|419090530|ref|ZP_13635850.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC4C]
gi|419096536|ref|ZP_13641780.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC4D]
gi|419102045|ref|ZP_13647212.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC4E]
gi|419107499|ref|ZP_13652609.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC4F]
gi|419113266|ref|ZP_13658301.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC5A]
gi|419118851|ref|ZP_13663836.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC5B]
gi|419124455|ref|ZP_13669359.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC5C]
gi|419130072|ref|ZP_13674925.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC5D]
gi|419134830|ref|ZP_13679639.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC5E]
gi|420267951|ref|ZP_14770358.1| riboflavin biosynthesis protein RibD [Escherichia coli PA22]
gi|420273477|ref|ZP_14775810.1| riboflavin biosynthesis protein RibD [Escherichia coli PA40]
gi|420278709|ref|ZP_14780976.1| riboflavin biosynthesis protein RibD [Escherichia coli TW06591]
gi|420284914|ref|ZP_14787132.1| riboflavin biosynthesis protein RibD [Escherichia coli TW10246]
gi|420290547|ref|ZP_14792712.1| riboflavin biosynthesis protein RibD [Escherichia coli TW11039]
gi|420302229|ref|ZP_14804261.1| riboflavin biosynthesis protein RibD [Escherichia coli TW10119]
gi|420307952|ref|ZP_14809926.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1738]
gi|420313330|ref|ZP_14815238.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1734]
gi|421810632|ref|ZP_16246443.1| riboflavin biosynthesis protein RibD [Escherichia coli 8.0416]
gi|421816726|ref|ZP_16252289.1| riboflavin biosynthesis protein RibD [Escherichia coli 10.0821]
gi|421822111|ref|ZP_16257549.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK920]
gi|421828844|ref|ZP_16264174.1| riboflavin biosynthesis protein RibD [Escherichia coli PA7]
gi|423652905|ref|ZP_17628209.1| riboflavin biosynthesis protein RibD [Escherichia coli PA31]
gi|424075271|ref|ZP_17812636.1| riboflavin biosynthesis protein RibD [Escherichia coli FDA505]
gi|424081599|ref|ZP_17818476.1| riboflavin biosynthesis protein RibD [Escherichia coli FDA517]
gi|424094439|ref|ZP_17830215.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK1985]
gi|424107653|ref|ZP_17842248.1| riboflavin biosynthesis protein RibD [Escherichia coli 93-001]
gi|424113644|ref|ZP_17847813.1| riboflavin biosynthesis protein RibD [Escherichia coli PA3]
gi|424119705|ref|ZP_17853436.1| riboflavin biosynthesis protein RibD [Escherichia coli PA5]
gi|424125965|ref|ZP_17859184.1| riboflavin biosynthesis protein RibD [Escherichia coli PA9]
gi|424138594|ref|ZP_17870907.1| riboflavin biosynthesis protein RibD [Escherichia coli PA14]
gi|424145035|ref|ZP_17876822.1| riboflavin biosynthesis protein RibD [Escherichia coli PA15]
gi|424151180|ref|ZP_17882452.1| riboflavin biosynthesis protein RibD [Escherichia coli PA24]
gi|424184919|ref|ZP_17887885.1| riboflavin biosynthesis protein RibD [Escherichia coli PA25]
gi|424421656|ref|ZP_17899516.1| riboflavin biosynthesis protein RibD [Escherichia coli PA32]
gi|424453588|ref|ZP_17905144.1| riboflavin biosynthesis protein RibD [Escherichia coli PA33]
gi|424459883|ref|ZP_17910843.1| riboflavin biosynthesis protein RibD [Escherichia coli PA39]
gi|424472917|ref|ZP_17922610.1| riboflavin biosynthesis protein RibD [Escherichia coli PA42]
gi|424498144|ref|ZP_17945435.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4203]
gi|424504373|ref|ZP_17951170.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4196]
gi|424518200|ref|ZP_17962647.1| riboflavin biosynthesis protein RibD [Escherichia coli TW14301]
gi|424530237|ref|ZP_17973884.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4422]
gi|424536213|ref|ZP_17979492.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4013]
gi|424542118|ref|ZP_17984956.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4402]
gi|424548444|ref|ZP_17990669.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4439]
gi|424554707|ref|ZP_17996446.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4436]
gi|424561053|ref|ZP_18002355.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4437]
gi|424573270|ref|ZP_18013710.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1845]
gi|425095898|ref|ZP_18498939.1| riboflavin biosynthesis protein RibD [Escherichia coli 3.4870]
gi|425123660|ref|ZP_18525254.1| riboflavin biosynthesis protein RibD [Escherichia coli 8.0586]
gi|425129699|ref|ZP_18530815.1| riboflavin biosynthesis protein RibD [Escherichia coli 8.2524]
gi|425136039|ref|ZP_18536778.1| riboflavin biosynthesis protein RibD [Escherichia coli 10.0833]
gi|425153874|ref|ZP_18553438.1| riboflavin biosynthesis protein RibD [Escherichia coli PA34]
gi|425160325|ref|ZP_18559514.1| riboflavin biosynthesis protein RibD [Escherichia coli FDA506]
gi|425165835|ref|ZP_18564659.1| riboflavin biosynthesis protein RibD [Escherichia coli FDA507]
gi|425172127|ref|ZP_18570541.1| riboflavin biosynthesis protein RibD [Escherichia coli FDA504]
gi|425178007|ref|ZP_18576076.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK1999]
gi|425190907|ref|ZP_18588048.1| riboflavin biosynthesis protein RibD [Escherichia coli NE1487]
gi|425197237|ref|ZP_18593902.1| riboflavin biosynthesis protein RibD [Escherichia coli NE037]
gi|425203898|ref|ZP_18600042.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK2001]
gi|425209652|ref|ZP_18605403.1| riboflavin biosynthesis protein RibD [Escherichia coli PA4]
gi|425215692|ref|ZP_18611025.1| riboflavin biosynthesis protein RibD [Escherichia coli PA23]
gi|425222262|ref|ZP_18617136.1| riboflavin biosynthesis protein RibD [Escherichia coli PA49]
gi|425228507|ref|ZP_18622918.1| riboflavin biosynthesis protein RibD [Escherichia coli PA45]
gi|425234807|ref|ZP_18628781.1| riboflavin biosynthesis protein RibD [Escherichia coli TT12B]
gi|425240812|ref|ZP_18634462.1| riboflavin biosynthesis protein RibD [Escherichia coli MA6]
gi|425252667|ref|ZP_18645560.1| riboflavin biosynthesis protein RibD [Escherichia coli CB7326]
gi|425258977|ref|ZP_18651356.1| riboflavin biosynthesis protein RibD [Escherichia coli EC96038]
gi|425265075|ref|ZP_18657014.1| riboflavin biosynthesis protein RibD [Escherichia coli 5412]
gi|425292534|ref|ZP_18683134.1| riboflavin biosynthesis protein RibD [Escherichia coli PA38]
gi|425309277|ref|ZP_18698758.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1735]
gi|425315191|ref|ZP_18704282.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1736]
gi|425345920|ref|ZP_18732737.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1849]
gi|425352132|ref|ZP_18738527.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1850]
gi|425358124|ref|ZP_18744110.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1856]
gi|425364230|ref|ZP_18749795.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1862]
gi|425370680|ref|ZP_18755656.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1864]
gi|425383474|ref|ZP_18767365.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1866]
gi|425402277|ref|ZP_18784893.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1870]
gi|425408817|ref|ZP_18790984.1| riboflavin biosynthesis protein RibD [Escherichia coli NE098]
gi|425426243|ref|ZP_18807304.1| riboflavin biosynthesis protein RibD [Escherichia coli 0.1304]
gi|428951046|ref|ZP_19023192.1| riboflavin biosynthesis protein RibD [Escherichia coli 88.1042]
gi|428956902|ref|ZP_19028612.1| riboflavin biosynthesis protein RibD [Escherichia coli 89.0511]
gi|428963235|ref|ZP_19034431.1| riboflavin biosynthesis protein RibD [Escherichia coli 90.0091]
gi|428975786|ref|ZP_19045968.1| riboflavin biosynthesis protein RibD [Escherichia coli 90.2281]
gi|428981510|ref|ZP_19051256.1| riboflavin biosynthesis protein RibD [Escherichia coli 93.0055]
gi|428987853|ref|ZP_19057153.1| riboflavin biosynthesis protein RibD [Escherichia coli 93.0056]
gi|428993665|ref|ZP_19062580.1| riboflavin biosynthesis protein RibD [Escherichia coli 94.0618]
gi|429006003|ref|ZP_19073928.1| riboflavin biosynthesis protein RibD [Escherichia coli 95.1288]
gi|429012351|ref|ZP_19079612.1| riboflavin biosynthesis protein RibD [Escherichia coli 95.0943]
gi|429024239|ref|ZP_19090660.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0427]
gi|429030555|ref|ZP_19096441.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0939]
gi|429036738|ref|ZP_19102188.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0932]
gi|429048469|ref|ZP_19113129.1| riboflavin biosynthesis protein RibD [Escherichia coli 97.0003]
gi|429053833|ref|ZP_19118330.1| riboflavin biosynthesis protein RibD [Escherichia coli 97.1742]
gi|429059521|ref|ZP_19123675.1| riboflavin biosynthesis protein RibD [Escherichia coli 97.0007]
gi|429064968|ref|ZP_19128838.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0672]
gi|429071536|ref|ZP_19134893.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0678]
gi|429076801|ref|ZP_19140021.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0713]
gi|429824016|ref|ZP_19355534.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0109]
gi|429830384|ref|ZP_19361252.1| riboflavin biosynthesis protein RibD [Escherichia coli 97.0010]
gi|444922728|ref|ZP_21242451.1| riboflavin biosynthesis protein RibD [Escherichia coli 09BKT078844]
gi|444934398|ref|ZP_21253343.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0815]
gi|444939978|ref|ZP_21258628.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0816]
gi|444967614|ref|ZP_21285092.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.1793]
gi|444973114|ref|ZP_21290399.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.1805]
gi|444978657|ref|ZP_21295655.1| riboflavin biosynthesis protein RibD [Escherichia coli ATCC 700728]
gi|444983951|ref|ZP_21300821.1| riboflavin biosynthesis protein RibD [Escherichia coli PA11]
gi|444989195|ref|ZP_21305937.1| riboflavin biosynthesis protein RibD [Escherichia coli PA19]
gi|444994548|ref|ZP_21311145.1| riboflavin biosynthesis protein RibD [Escherichia coli PA13]
gi|445000045|ref|ZP_21316509.1| riboflavin biosynthesis protein RibD [Escherichia coli PA2]
gi|445005498|ref|ZP_21321840.1| riboflavin biosynthesis protein RibD [Escherichia coli PA47]
gi|445010673|ref|ZP_21326867.1| riboflavin biosynthesis protein RibD [Escherichia coli PA48]
gi|445016456|ref|ZP_21332507.1| riboflavin biosynthesis protein RibD [Escherichia coli PA8]
gi|445021903|ref|ZP_21337826.1| riboflavin biosynthesis protein RibD [Escherichia coli 7.1982]
gi|445027142|ref|ZP_21342923.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.1781]
gi|445032639|ref|ZP_21348265.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.1762]
gi|445038333|ref|ZP_21353804.1| riboflavin biosynthesis protein RibD [Escherichia coli PA35]
gi|445043547|ref|ZP_21358887.1| riboflavin biosynthesis protein RibD [Escherichia coli 3.4880]
gi|445049120|ref|ZP_21364291.1| riboflavin biosynthesis protein RibD [Escherichia coli 95.0083]
gi|445054769|ref|ZP_21369722.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0670]
gi|452969072|ref|ZP_21967299.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. EC4009]
gi|12513266|gb|AAG54763.1|AE005220_12 bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli O157:H7 str.
EDL933]
gi|13359924|dbj|BAB33890.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli O157:H7 str.
Sakai]
gi|187768260|gb|EDU32104.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4196]
gi|188015886|gb|EDU54008.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4113]
gi|188999379|gb|EDU68365.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4076]
gi|189355992|gb|EDU74411.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4401]
gi|189362505|gb|EDU80924.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4486]
gi|189368039|gb|EDU86455.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4501]
gi|189373620|gb|EDU92036.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC869]
gi|189377412|gb|EDU95828.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC508]
gi|208725980|gb|EDZ75581.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4206]
gi|208732288|gb|EDZ80976.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4045]
gi|208737025|gb|EDZ84709.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4042]
gi|209157113|gb|ACI34546.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
EC4115]
gi|209744084|gb|ACI70349.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli]
gi|209744086|gb|ACI70350.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli]
gi|209744088|gb|ACI70351.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli]
gi|209744090|gb|ACI70352.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli]
gi|209744092|gb|ACI70353.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Escherichia coli]
gi|217321753|gb|EEC30177.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
TW14588]
gi|254590997|gb|ACT70358.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Escherichia coli O157:H7 str. TW14359]
gi|290761193|gb|ADD55154.1| Bifunctional deaminase-reductase, C-terminal:Riboflavin
biosynthesis protein RibD [Escherichia coli O55:H7 str.
CB9615]
gi|320192827|gb|EFW67467.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Escherichia coli O157:H7 str. EC1212]
gi|320638406|gb|EFX08120.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H7 str. G5101]
gi|320643786|gb|EFX12909.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H- str. 493-89]
gi|320649137|gb|EFX17715.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O157:H- str. H 2687]
gi|326341175|gb|EGD64967.1| riboflavin biosynthesis protein RibD [Escherichia coli O157:H7 str.
1044]
gi|326346050|gb|EGD69789.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Escherichia coli O157:H7 str. 1125]
gi|374357422|gb|AEZ39129.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O55:H7 str. RM12579]
gi|377900591|gb|EHU64923.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC3A]
gi|377902508|gb|EHU66812.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC3B]
gi|377914332|gb|EHU78455.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC3C]
gi|377918724|gb|EHU82771.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC3D]
gi|377920813|gb|EHU84828.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC3E]
gi|377932240|gb|EHU96094.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC3F]
gi|377934450|gb|EHU98281.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC4A]
gi|377940580|gb|EHV04329.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC4B]
gi|377950721|gb|EHV14348.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC4C]
gi|377951436|gb|EHV15055.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC4D]
gi|377955420|gb|EHV18976.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC4E]
gi|377966057|gb|EHV29470.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC5A]
gi|377967370|gb|EHV30776.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC4F]
gi|377973482|gb|EHV36822.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC5B]
gi|377981446|gb|EHV44705.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC5D]
gi|377981693|gb|EHV44951.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC5C]
gi|377988553|gb|EHV51731.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC5E]
gi|386794467|gb|AFJ27501.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli Xuzhou21]
gi|390653005|gb|EIN31172.1| riboflavin biosynthesis protein RibD [Escherichia coli FDA517]
gi|390653550|gb|EIN31689.1| riboflavin biosynthesis protein RibD [Escherichia coli FDA505]
gi|390670074|gb|EIN46662.1| riboflavin biosynthesis protein RibD [Escherichia coli 93-001]
gi|390674219|gb|EIN50422.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK1985]
gi|390688840|gb|EIN63867.1| riboflavin biosynthesis protein RibD [Escherichia coli PA3]
gi|390692401|gb|EIN67094.1| riboflavin biosynthesis protein RibD [Escherichia coli PA9]
gi|390693455|gb|EIN68090.1| riboflavin biosynthesis protein RibD [Escherichia coli PA5]
gi|390710416|gb|EIN83438.1| riboflavin biosynthesis protein RibD [Escherichia coli PA15]
gi|390713254|gb|EIN86193.1| riboflavin biosynthesis protein RibD [Escherichia coli PA14]
gi|390720431|gb|EIN93143.1| riboflavin biosynthesis protein RibD [Escherichia coli PA22]
gi|390733691|gb|EIO05252.1| riboflavin biosynthesis protein RibD [Escherichia coli PA25]
gi|390734113|gb|EIO05668.1| riboflavin biosynthesis protein RibD [Escherichia coli PA24]
gi|390752381|gb|EIO22220.1| riboflavin biosynthesis protein RibD [Escherichia coli PA31]
gi|390752823|gb|EIO22625.1| riboflavin biosynthesis protein RibD [Escherichia coli PA32]
gi|390755470|gb|EIO25012.1| riboflavin biosynthesis protein RibD [Escherichia coli PA33]
gi|390762395|gb|EIO31653.1| riboflavin biosynthesis protein RibD [Escherichia coli PA40]
gi|390778668|gb|EIO46425.1| riboflavin biosynthesis protein RibD [Escherichia coli PA42]
gi|390784455|gb|EIO52023.1| riboflavin biosynthesis protein RibD [Escherichia coli PA39]
gi|390785683|gb|EIO53225.1| riboflavin biosynthesis protein RibD [Escherichia coli TW06591]
gi|390795033|gb|EIO62318.1| riboflavin biosynthesis protein RibD [Escherichia coli TW10246]
gi|390801778|gb|EIO68829.1| riboflavin biosynthesis protein RibD [Escherichia coli TW11039]
gi|390819570|gb|EIO85903.1| riboflavin biosynthesis protein RibD [Escherichia coli TW10119]
gi|390837422|gb|EIP01847.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4203]
gi|390840205|gb|EIP04260.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4196]
gi|390855826|gb|EIP18502.1| riboflavin biosynthesis protein RibD [Escherichia coli TW14301]
gi|390871944|gb|EIP33318.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4422]
gi|390876349|gb|EIP37335.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4013]
gi|390886231|gb|EIP46360.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4402]
gi|390888254|gb|EIP48143.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4439]
gi|390895263|gb|EIP54742.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4436]
gi|390904178|gb|EIP63194.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1738]
gi|390910742|gb|EIP69467.1| riboflavin biosynthesis protein RibD [Escherichia coli EC4437]
gi|390911895|gb|EIP70576.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1734]
gi|390926381|gb|EIP83974.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1845]
gi|408072522|gb|EKH06843.1| riboflavin biosynthesis protein RibD [Escherichia coli PA7]
gi|408076031|gb|EKH10260.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK920]
gi|408086364|gb|EKH19901.1| riboflavin biosynthesis protein RibD [Escherichia coli PA34]
gi|408090641|gb|EKH23912.1| riboflavin biosynthesis protein RibD [Escherichia coli FDA506]
gi|408095686|gb|EKH28651.1| riboflavin biosynthesis protein RibD [Escherichia coli FDA507]
gi|408102828|gb|EKH35217.1| riboflavin biosynthesis protein RibD [Escherichia coli FDA504]
gi|408110201|gb|EKH42028.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK1999]
gi|408122356|gb|EKH53218.1| riboflavin biosynthesis protein RibD [Escherichia coli NE1487]
gi|408130399|gb|EKH60547.1| riboflavin biosynthesis protein RibD [Escherichia coli NE037]
gi|408132476|gb|EKH62452.1| riboflavin biosynthesis protein RibD [Escherichia coli FRIK2001]
gi|408141577|gb|EKH71032.1| riboflavin biosynthesis protein RibD [Escherichia coli PA4]
gi|408150497|gb|EKH79079.1| riboflavin biosynthesis protein RibD [Escherichia coli PA23]
gi|408153275|gb|EKH81670.1| riboflavin biosynthesis protein RibD [Escherichia coli PA49]
gi|408158599|gb|EKH86716.1| riboflavin biosynthesis protein RibD [Escherichia coli PA45]
gi|408167155|gb|EKH94682.1| riboflavin biosynthesis protein RibD [Escherichia coli TT12B]
gi|408172641|gb|EKH99704.1| riboflavin biosynthesis protein RibD [Escherichia coli MA6]
gi|408187234|gb|EKI13210.1| riboflavin biosynthesis protein RibD [Escherichia coli CB7326]
gi|408192525|gb|EKI18098.1| riboflavin biosynthesis protein RibD [Escherichia coli EC96038]
gi|408192637|gb|EKI18209.1| riboflavin biosynthesis protein RibD [Escherichia coli 5412]
gi|408233403|gb|EKI56532.1| riboflavin biosynthesis protein RibD [Escherichia coli PA38]
gi|408239521|gb|EKI62269.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1735]
gi|408249334|gb|EKI71280.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1736]
gi|408279123|gb|EKI98785.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1849]
gi|408285502|gb|EKJ04526.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1850]
gi|408288119|gb|EKJ06957.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1856]
gi|408300908|gb|EKJ18585.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1862]
gi|408301143|gb|EKJ18797.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1864]
gi|408318811|gb|EKJ35013.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1866]
gi|408337220|gb|EKJ51956.1| riboflavin biosynthesis protein RibD [Escherichia coli NE098]
gi|408338634|gb|EKJ53280.1| riboflavin biosynthesis protein RibD [Escherichia coli EC1870]
gi|408353267|gb|EKJ66789.1| riboflavin biosynthesis protein RibD [Escherichia coli 0.1304]
gi|408559601|gb|EKK35918.1| riboflavin biosynthesis protein RibD [Escherichia coli 3.4870]
gi|408585452|gb|EKK60319.1| riboflavin biosynthesis protein RibD [Escherichia coli 8.0586]
gi|408590477|gb|EKK64952.1| riboflavin biosynthesis protein RibD [Escherichia coli 8.2524]
gi|408592292|gb|EKK66684.1| riboflavin biosynthesis protein RibD [Escherichia coli 10.0833]
gi|408605934|gb|EKK79414.1| riboflavin biosynthesis protein RibD [Escherichia coli 8.0416]
gi|408617301|gb|EKK90423.1| riboflavin biosynthesis protein RibD [Escherichia coli 10.0821]
gi|427214724|gb|EKV83996.1| riboflavin biosynthesis protein RibD [Escherichia coli 88.1042]
gi|427217254|gb|EKV86323.1| riboflavin biosynthesis protein RibD [Escherichia coli 89.0511]
gi|427234099|gb|EKW01802.1| riboflavin biosynthesis protein RibD [Escherichia coli 90.2281]
gi|427236292|gb|EKW03873.1| riboflavin biosynthesis protein RibD [Escherichia coli 90.0091]
gi|427251555|gb|EKW18118.1| riboflavin biosynthesis protein RibD [Escherichia coli 93.0056]
gi|427253058|gb|EKW19501.1| riboflavin biosynthesis protein RibD [Escherichia coli 93.0055]
gi|427254431|gb|EKW20792.1| riboflavin biosynthesis protein RibD [Escherichia coli 94.0618]
gi|427270549|gb|EKW35427.1| riboflavin biosynthesis protein RibD [Escherichia coli 95.0943]
gi|427276523|gb|EKW41094.1| riboflavin biosynthesis protein RibD [Escherichia coli 95.1288]
gi|427292500|gb|EKW55848.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0427]
gi|427293869|gb|EKW57089.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0939]
gi|427304887|gb|EKW67507.1| riboflavin biosynthesis protein RibD [Escherichia coli 97.0003]
gi|427306683|gb|EKW69198.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0932]
gi|427321714|gb|EKW83389.1| riboflavin biosynthesis protein RibD [Escherichia coli 97.1742]
gi|427322750|gb|EKW84375.1| riboflavin biosynthesis protein RibD [Escherichia coli 97.0007]
gi|427334443|gb|EKW95512.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0713]
gi|427334746|gb|EKW95814.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0678]
gi|427336977|gb|EKW97925.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0672]
gi|429260348|gb|EKY43939.1| riboflavin biosynthesis protein RibD [Escherichia coli 96.0109]
gi|429261936|gb|EKY45327.1| riboflavin biosynthesis protein RibD [Escherichia coli 97.0010]
gi|444550904|gb|ELV28922.1| riboflavin biosynthesis protein RibD [Escherichia coli 09BKT078844]
gi|444551959|gb|ELV29830.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0815]
gi|444567307|gb|ELV44073.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0816]
gi|444586304|gb|ELV61819.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.1793]
gi|444599976|gb|ELV74832.1| riboflavin biosynthesis protein RibD [Escherichia coli ATCC 700728]
gi|444600442|gb|ELV75278.1| riboflavin biosynthesis protein RibD [Escherichia coli PA11]
gi|444608515|gb|ELV83039.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.1805]
gi|444614896|gb|ELV89121.1| riboflavin biosynthesis protein RibD [Escherichia coli PA13]
gi|444615563|gb|ELV89767.1| riboflavin biosynthesis protein RibD [Escherichia coli PA19]
gi|444623552|gb|ELV97472.1| riboflavin biosynthesis protein RibD [Escherichia coli PA2]
gi|444632643|gb|ELW06198.1| riboflavin biosynthesis protein RibD [Escherichia coli PA48]
gi|444633138|gb|ELW06679.1| riboflavin biosynthesis protein RibD [Escherichia coli PA47]
gi|444637778|gb|ELW11143.1| riboflavin biosynthesis protein RibD [Escherichia coli PA8]
gi|444647958|gb|ELW20914.1| riboflavin biosynthesis protein RibD [Escherichia coli 7.1982]
gi|444650269|gb|ELW23115.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.1781]
gi|444654153|gb|ELW26847.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.1762]
gi|444663135|gb|ELW35380.1| riboflavin biosynthesis protein RibD [Escherichia coli PA35]
gi|444667407|gb|ELW39445.1| riboflavin biosynthesis protein RibD [Escherichia coli 3.4880]
gi|444672831|gb|ELW44517.1| riboflavin biosynthesis protein RibD [Escherichia coli 95.0083]
gi|444674553|gb|ELW46083.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0670]
Length = 367
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR----SIKTS--------HQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR ++T QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|74310983|ref|YP_309402.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella sonnei Ss046]
gi|383176995|ref|YP_005455000.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella sonnei 53G]
gi|414574619|ref|ZP_11431828.1| riboflavin biosynthesis protein RibD [Shigella sonnei 3233-85]
gi|418262446|ref|ZP_12883825.1| riboflavin biosynthesis protein RibD [Shigella sonnei str. Moseley]
gi|420357031|ref|ZP_14858047.1| riboflavin biosynthesis protein RibD [Shigella sonnei 3226-85]
gi|432484142|ref|ZP_19726066.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE212]
gi|432669346|ref|ZP_19904895.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE119]
gi|433172284|ref|ZP_20356844.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE232]
gi|73854460|gb|AAZ87167.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Shigella sonnei Ss046]
gi|391288767|gb|EIQ47266.1| riboflavin biosynthesis protein RibD [Shigella sonnei 3226-85]
gi|391289247|gb|EIQ47742.1| riboflavin biosynthesis protein RibD [Shigella sonnei 3233-85]
gi|397902983|gb|EJL19290.1| riboflavin biosynthesis protein RibD [Shigella sonnei str. Moseley]
gi|431018544|gb|ELD31975.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE212]
gi|431213736|gb|ELF11592.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE119]
gi|431696229|gb|ELJ61416.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE232]
Length = 367
Score = 260 bits (665), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|289577285|ref|YP_003475912.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus
Ab9]
gi|289526998|gb|ADD01350.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter italicus
Ab9]
Length = 360
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 143/304 (47%), Positives = 199/304 (65%), Gaps = 7/304 (2%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
++PNP VG VIVK +II GY + GG HAE++AL NA DV ST+++TLEPCS+
Sbjct: 19 TNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVE---DVKGSTMFVTLEPCSH 75
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
+G TPPC E +IKSGIKKV IA+ DPNP VSG G+ +L AGI V G+M+KEA ++N
Sbjct: 76 YGKTPPCVEEIIKSGIKKVYIAMEDPNPKVSGNGIKRLKEAGIEVHVGMMEKEARKLNEI 135
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
FF + P+V +K A S+D K + YN +S+WIT+++SR +H R R AI+ G+ TV
Sbjct: 136 FFKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNTV 195
Query: 194 LKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPM---KRKILE 250
+KDNP L R ++ P RI++DS RI V++ + AT M KRK LE
Sbjct: 196 IKDNPMLTTR-LEGYKNPVRIIVDSRGRIPLNSNVIRDKTAKTIIATTELMPNNKRKKLE 254
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
D+ EVI+L N+ GKV L+ ++I+LG+R I+ + IE G LN + EG VD+++ +ISP
Sbjct: 255 DMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSAFKEGIVDKVMFFISP 314
Query: 311 ILIG 314
+IG
Sbjct: 315 RIIG 318
>gi|66047689|ref|YP_237530.1| riboflavin biosynthesis protein RibD:riboflavin-specific deaminase,
C-terminal, partial [Pseudomonas syringae pv. syringae
B728a]
gi|63258396|gb|AAY39492.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas syringae pv. syringae B728a]
Length = 366
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 217/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV+E RI+ G+ G HAE+ AL A G
Sbjct: 1 MARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA---GELA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI++G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 58 RGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGIGVQ 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 118 CGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +L+G TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 178 RAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPF 237
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 238 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMDELAARGVNEVLV 293
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 294 EAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGND 353
Query: 346 IRILA 350
R++A
Sbjct: 354 WRVIA 358
>gi|422672002|ref|ZP_16731367.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
aceris str. M302273]
gi|424069602|ref|ZP_17807048.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|330969741|gb|EGH69807.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
aceris str. M302273]
gi|407994358|gb|EKG34940.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
Length = 378
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 217/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV+E RI+ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI++G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGIGVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +L+G TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 250 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 306 EAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|120553775|ref|YP_958126.1| riboflavin biosynthesis protein RibD [Marinobacter aquaeolei VT8]
gi|120323624|gb|ABM17939.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Marinobacter aquaeolei VT8]
Length = 363
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 206/365 (56%), Gaps = 18/365 (4%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q A + ++ PNPRVGCVI K I+ G+ + G HAE+ AL A G++
Sbjct: 2 MARAVQLAWRGRYSTHPNPRVGCVIAKGDLIVGEGWHERAGEAHAEVRALSQA---GHEA 58
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI +G+ V A DPNP VSG+G+ L AGI V
Sbjct: 59 RGATAYVTLEPCSHYGRTPPCARALIDAGVAHVFAATKDPNPSVSGRGLDMLREAGIRVT 118
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+G+M EA +N GF RM G PWVR+K+A+SLD +T++ + SQWIT E+R D
Sbjct: 119 EGVMADEAARLNPGFMKRMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARADVQRL 178
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSHQPYRIVIDSYLRIDPFFRVLK 230
RA S AILTG+GTVL D+P L VR + S QP R++ D R R+L+
Sbjct: 179 RAISDAILTGVGTVLADDPSLTVRRDEMGDIGDATDPSRQPLRVIADRDARTPATARILQ 238
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGK---VDLQAVIIELGKRKINELHIEA 287
GG +F A+ + +DL + L K VD+ ++ LG+ INEL +EA
Sbjct: 239 GGNVQVFCASST-LASGPAQDLAALGVSLTGVAWKDNGVDVAELLDALGELGINELLVEA 297
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
G L I E VDEL LY +P+ +G P ++ K++ K + +++G D R
Sbjct: 298 GPTLAGTFIGENLVDELWLYQAPVFLGSTGRPTAHLPLETMADKVQWKVLDRRQVGEDQR 357
Query: 348 -ILAR 351
ILAR
Sbjct: 358 LILAR 362
>gi|77361290|ref|YP_340865.1| riboflavin biosynthesis protein [Pseudoalteromonas haloplanktis
TAC125]
gi|76876201|emb|CAI87423.1| Riboflavin biosynthesis protein [Pseudoalteromonas haloplanktis
TAC125]
Length = 382
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 144/361 (39%), Positives = 211/361 (58%), Gaps = 16/361 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK I+ G+ + G HAE++AL A G
Sbjct: 15 MARAIELAKKGRFTTTPNPNVGCVLVKNNEIVGEGFHQLAGQGHAEVNAL---AMAGSKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E L +G+ KVI A+ D NP V+GKG+ L AGI V
Sbjct: 72 KGATAYVTLEPCSHYGRTPPCAEGLKAAGVVKVIAAMVDSNPQVAGKGLKILSDAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N+GFF RM+ G+P+V K+A+S+D KT+L N S+WIT +R D ++
Sbjct: 132 YGLLEAQARALNLGFFKRMEHGLPYVTCKMAASIDGKTALNNGQSKWITGAAARQDVQLY 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTS---HQPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL D+ +LNVR ++ T QP R++IDS R+ P +
Sbjct: 192 RAQSCAILTGADTVLVDDAKLNVRKNELPQALPTQLPLRQPVRVIIDSQNRLTPNLALFA 251
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290
I T + + + H V+ N+ KVDL AV+ +L K + N + +EAG
Sbjct: 252 IESEIIIFTTKVDKSQHWPHFVKHIVVTASNS--KVDLTAVLKKLAKLQFNTVWLEAGAT 309
Query: 291 LNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L ++ +DE + Y++P LIG + ++ P S+ I L F+E +IG D+RI
Sbjct: 310 LAGKMVELDLIDEFIFYLAPKLIGCDGKSLVNFPELISMQNTIDLTFNECTRIGDDLRIS 369
Query: 350 A 350
A
Sbjct: 370 A 370
>gi|381405465|ref|ZP_09930149.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Pantoea sp. Sc1]
gi|380738664|gb|EIB99727.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Pantoea sp. Sc1]
Length = 366
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 208/362 (57%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV++ ++ G+ + G HAE+ AL A G
Sbjct: 6 MARALELARRGRFTTMPNPNVGCVIVRDGEVVGEGWHQRAGEPHAEVHALRMA---GEKA 62
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+K+V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 63 RGATAYVTLEPCSHHGRTPPCCDALIAAGVKRVVAAMQDPNPQVAGRGLHRLQQAGIEVS 122
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G PW+++K+ +SLD +T++ + SQWITS +R D
Sbjct: 123 HGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQRL 182
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + S QP R++IDS R+ R
Sbjct: 183 RAQSAAILSSSATVLADDPSLTVRWSELSADTQALLDEQQLRQPVRVIIDSQNRVTSGHR 242
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G L + G I +P ++DL A+++ LG+R+IN + +EA
Sbjct: 243 LISQPGETWLMRHQLDQQSW---PAGVTQIAVPQREHQLDLVAMMMLLGQRQINSVWVEA 299
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G DEL++Y++P L+G E + LP L +F +++++G D+
Sbjct: 300 GATLAGALLQAGLADELIVYVAPKLLGDEGRGLCHLPGLSQLADAPAFRFSDVRQVGDDL 359
Query: 347 RI 348
R+
Sbjct: 360 RL 361
>gi|293413668|ref|ZP_06656317.1| riboflavin biosynthesis protein RibD [Escherichia coli B185]
gi|291433726|gb|EFF06699.1| riboflavin biosynthesis protein RibD [Escherichia coli B185]
Length = 367
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH---QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR ++ H QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQHNLRQPVRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|444352865|ref|YP_007389009.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)
/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC
1.1.1.193) [Enterobacter aerogenes EA1509E]
gi|443903695|emb|CCG31469.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase (EC 3.5.4.26)
/ 5-amino-6-(5-phosphoribosylamino)uracil reductase (EC
1.1.1.193) [Enterobacter aerogenes EA1509E]
Length = 367
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 143/352 (40%), Positives = 214/352 (60%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GDKAKGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMNEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G PW+++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPWIQLKMGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P L VR + S QP RIVIDS R+ P R+++ G
Sbjct: 192 TSSATVLADDPALTVRWQELSADTQALYPQENLRQPLRIVIDSQNRVTPEHRIIQQQGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+F T +R +++ ++ P + G +DL ++++LGK+++N + +EAG L AL
Sbjct: 252 LFARTHAD-ERAWPDNV--RTLLGPEHNGHLDLVLLMMQLGKQQVNSIWVEAGPTLAGAL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++YI+P L+G +A + LP L + KF++I+++GPD+
Sbjct: 309 LQAGLVDELIVYIAPKLLGSDARGLCALPGLEKLSQAPHFKFNDIRQVGPDV 360
>gi|354722287|ref|ZP_09036502.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter mori LMG 25706]
Length = 367
Score = 260 bits (664), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 144/348 (41%), Positives = 209/348 (60%), Gaps = 19/348 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVKE I+ GY G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPNVGCVIVKEGEIVGEGYHLRAGEPHAEVHALRMA---GEKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC EALI +G+ +V+ ++ DPNP V+G+G+ +L GI V GLM ++A IN
Sbjct: 76 SHHGRTPPCCEALIAAGVSRVVASMQDPNPQVAGRGLYRLQQEGIDVSHGLMMQDAEAIN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ N SQWITS ++R D RA+S AILT
Sbjct: 136 KGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQRLRAQSHAILTSSE 195
Query: 192 TVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + S QP RI+IDS R+ P R+++ G
Sbjct: 196 TVLADDPAMTVRWDELSADTQALYPQENLRQPLRIIIDSQNRVTPDHRIVQQPGETWIAR 255
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
T R+ E G I++P + G +DL +++ LGK+++N + +EAG L AL+ G
Sbjct: 256 TKED-TREWAE--GVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVEAGPTLAGALLQAG 312
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
VDEL++Y++P L+G +A +F LP L +L+F EI+ +GPD+
Sbjct: 313 LVDELIVYVAPKLLGHDARGLFVLPGLEKLADAPQLRFSEIRPVGPDV 360
>gi|410620475|ref|ZP_11331346.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
polaris LMG 21857]
gi|410159960|dbj|GAC35484.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
polaris LMG 21857]
Length = 372
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 211/367 (57%), Gaps = 22/367 (5%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M LA++ A K +SPNP VGCVI + II G+ K G HAEI AL A G
Sbjct: 12 MALAIRLAEKGQYTTSPNPNVGCVITDSQGHIIGQGWHKKAGTAHAEIHALAEA---GEQ 68
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPCS+ G T PC +AL+ +GIK+V+ A+ DPNPLV+G G+ +L +AG+ V
Sbjct: 69 ANGATAYVTLEPCSHHGRTGPCAQALLNAGIKRVVAAMVDPNPLVAGNGLKKLNAAGVEV 128
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
GL++ EA +N GF RM G PWV +K+ASSLD KT+L+N SQWIT +R D
Sbjct: 129 SSGLLENEAKRLNRGFIKRMTTGQPWVTVKLASSLDGKTALHNGLSQWITGPLARQDVQR 188
Query: 179 WRARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFR 227
RARSCAIL+G GTVL DNP L VR +I QP R+++D ++ P
Sbjct: 189 HRARSCAILSGSGTVLADNPSLTVRHSELGFAMEDIAIDELRQPSRVLLDGRNQMHPDLH 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
+ + + L E H E + ++DLQ V+ LG+R N + +E
Sbjct: 249 LFSLSSPIVLINSQL----NSAEFPSHVEQYQAKSKGAQLDLQDVMQHLGQRGFNSVWVE 304
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG +L AL+ +DEL+LY +P L+G+ ++F + + + L++ +++ +GPD
Sbjct: 305 AGAKLAGALLQNKLIDELILYQAPKLLGDKGRDLFAVDELTQMQQAFALQWSDVRHVGPD 364
Query: 346 IRILARF 352
+++ A F
Sbjct: 365 LKLTAYF 371
>gi|425286971|ref|ZP_18677906.1| riboflavin biosynthesis protein RibD [Escherichia coli 3006]
gi|408218905|gb|EKI43087.1| riboflavin biosynthesis protein RibD [Escherichia coli 3006]
Length = 361
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 238 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 289
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 290 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 349
Query: 342 IGPDI 346
+GPD+
Sbjct: 350 VGPDV 354
>gi|387813146|ref|YP_005428627.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381338157|emb|CCG94204.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Marinobacter hydrocarbonoclasticus ATCC
49840]
Length = 371
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 206/365 (56%), Gaps = 18/365 (4%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q A + ++ PNPRVGCVI K I+ G+ + G HAE+ AL A G++
Sbjct: 10 MARAVQLAWRGRYSTHPNPRVGCVIAKGDLIVGEGWHERAGEAHAEVRALSQA---GHEA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI +G+ V A DPNP VSG+G+ L AGI V
Sbjct: 67 RGATAYVTLEPCSHYGRTPPCARALIDAGVAHVFAATKDPNPSVSGRGLDMLREAGIRVT 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+G+M EA +N GF RM G PWVR+K+A+SLD +T++ + SQWIT E+R D
Sbjct: 127 EGVMADEASRLNPGFMKRMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARADVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSHQPYRIVIDSYLRIDPFFRVLK 230
RA S AILTG+GTVL D+P L VR + S QP R++ D R R+L+
Sbjct: 187 RAISDAILTGVGTVLADDPSLTVRRDEMGDIGDATDPSRQPLRVIADRDARTPATARILQ 246
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGK---VDLQAVIIELGKRKINELHIEA 287
GG +F A+ + +DL + L K VD+ ++ LG+ INEL +EA
Sbjct: 247 GGNVQVFCASST-LASGPAQDLAALGVSLTGVAWKDNGVDVAELLDALGELGINELLVEA 305
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
G L I E VDEL LY +P+ +G P ++ K++ K + +++G D R
Sbjct: 306 GPTLAGTFIGENLVDELWLYQAPVFLGSTGRPTAHLPLETMADKVQWKVLDRRQVGEDQR 365
Query: 348 -ILAR 351
ILAR
Sbjct: 366 LILAR 370
>gi|417688171|ref|ZP_12337417.1| riboflavin biosynthesis protein RibD [Shigella boydii 5216-82]
gi|332094564|gb|EGI99610.1| riboflavin biosynthesis protein RibD [Shigella boydii 5216-82]
Length = 367
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
R++S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RSQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPGHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPET--ERTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|218698677|ref|YP_002406306.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli IAI39]
gi|218368663|emb|CAR16402.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli IAI39]
Length = 367
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-DDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + +LP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|212709165|ref|ZP_03317293.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM
30120]
gi|212688077|gb|EEB47605.1| hypothetical protein PROVALCAL_00198 [Providencia alcalifaciens DSM
30120]
Length = 371
Score = 260 bits (664), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 213/365 (58%), Gaps = 19/365 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + AK +SPNP VGCVIV++ I+ GY + G HAE+ AL A G
Sbjct: 9 MARAFELAKEGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMA---GDKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +GI +V+ A+ DPNP V+G+G+ L AGI
Sbjct: 66 KGATAYVTLEPCSHHGRTPPCAEALINAGISRVVAAMQDPNPQVAGRGLYMLNQAGIETA 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
++ +EA +N GF RM+ P++++K+A+SLD KT+L N S+WITS +R D +
Sbjct: 126 SNILLEEAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALANGESKWITSPAARKDVQVL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P L VR +T QP RIV+D + RI P +
Sbjct: 186 RAQASAILSTSNTVLADDPALTVRWNELPEDIQAKYPEETLRQPIRIVLDRHNRITPDHK 245
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V + G C D+ E + +P + +DL ++++L KR +N + +EA
Sbjct: 246 VTQLEGECWLVRPTPDTAVTWQGDV--EQLAIPADDNGIDLVILMMQLAKRNVNSIWVEA 303
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEAY-NMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G +L +L+ G VDEL++YI+P L+G+A + +LP +L K +F +++K+G D+
Sbjct: 304 GAKLAGSLLKLGLVDELIVYIAPKLLGDAARGLVSLPELSALSDAPKFEFTDVEKVGSDL 363
Query: 347 RILAR 351
R+ R
Sbjct: 364 RVRLR 368
>gi|424074097|ref|ZP_17811508.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|407995044|gb|EKG35592.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
Length = 378
Score = 259 bits (663), Expect = 9e-67, Method: Compositional matrix adjust.
Identities = 141/365 (38%), Positives = 217/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV+E RI+ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI++G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPDVSGRGLLRLMNAGIGVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +L+G TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 250 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 306 EAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|417616802|ref|ZP_12267236.1| riboflavin biosynthesis protein RibD [Escherichia coli G58-1]
gi|345381174|gb|EGX13059.1| riboflavin biosynthesis protein RibD [Escherichia coli G58-1]
Length = 355
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/337 (41%), Positives = 206/337 (61%), Gaps = 20/337 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQED-SREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLP 323
G L AL+ G VDEL++YI+P L+G +A + TLP
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLP 337
>gi|193065186|ref|ZP_03046259.1| riboflavin biosynthesis protein RibD [Escherichia coli E22]
gi|194428808|ref|ZP_03061343.1| riboflavin biosynthesis protein RibD [Escherichia coli B171]
gi|260842612|ref|YP_003220390.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O103:H2 str. 12009]
gi|415801169|ref|ZP_11499570.1| riboflavin biosynthesis protein RibD [Escherichia coli E128010]
gi|417173580|ref|ZP_12003376.1| riboflavin biosynthesis protein RibD [Escherichia coli 3.2608]
gi|417179225|ref|ZP_12007325.1| riboflavin biosynthesis protein RibD [Escherichia coli 93.0624]
gi|417252415|ref|ZP_12044174.1| riboflavin biosynthesis protein RibD [Escherichia coli 4.0967]
gi|417621678|ref|ZP_12272007.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_H.1.8]
gi|419287875|ref|ZP_13829993.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC11A]
gi|419293212|ref|ZP_13835273.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC11B]
gi|419298653|ref|ZP_13840671.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC11C]
gi|419304936|ref|ZP_13846850.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC11D]
gi|419309962|ref|ZP_13851839.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC11E]
gi|419315281|ref|ZP_13857109.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC12A]
gi|419321056|ref|ZP_13862799.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC12B]
gi|419327302|ref|ZP_13868935.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC12C]
gi|419332714|ref|ZP_13874278.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC12D]
gi|419339651|ref|ZP_13881128.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC12E]
gi|419867926|ref|ZP_14390240.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O103:H2 str. CVM9450]
gi|420389750|ref|ZP_14889023.1| riboflavin biosynthesis protein RibD [Escherichia coli EPEC
C342-62]
gi|192927160|gb|EDV81781.1| riboflavin biosynthesis protein RibD [Escherichia coli E22]
gi|194413111|gb|EDX29398.1| riboflavin biosynthesis protein RibD [Escherichia coli B171]
gi|257757759|dbj|BAI29256.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O103:H2 str. 12009]
gi|323160479|gb|EFZ46427.1| riboflavin biosynthesis protein RibD [Escherichia coli E128010]
gi|345386253|gb|EGX16088.1| riboflavin biosynthesis protein RibD [Escherichia coli STEC_H.1.8]
gi|378136509|gb|EHW97803.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC11A]
gi|378147323|gb|EHX08471.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC11B]
gi|378153065|gb|EHX14151.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC11D]
gi|378157229|gb|EHX18271.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC11C]
gi|378161685|gb|EHX22661.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC11E]
gi|378175074|gb|EHX35893.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC12A]
gi|378175579|gb|EHX36395.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC12B]
gi|378177072|gb|EHX37873.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC12C]
gi|378191117|gb|EHX51693.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC12E]
gi|378191929|gb|EHX52503.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC12D]
gi|386176272|gb|EIH53751.1| riboflavin biosynthesis protein RibD [Escherichia coli 3.2608]
gi|386186477|gb|EIH69193.1| riboflavin biosynthesis protein RibD [Escherichia coli 93.0624]
gi|386216346|gb|EII32835.1| riboflavin biosynthesis protein RibD [Escherichia coli 4.0967]
gi|388346466|gb|EIL12183.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O103:H2 str. CVM9450]
gi|391315295|gb|EIQ72828.1| riboflavin biosynthesis protein RibD [Escherichia coli EPEC
C342-62]
Length = 367
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSTQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQVLYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + +LP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQVGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|345863043|ref|ZP_08815256.1| riboflavin biosynthesis protein RibD [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345125926|gb|EGW55793.1| riboflavin biosynthesis protein RibD [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 341
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 137/339 (40%), Positives = 219/339 (64%), Gaps = 14/339 (4%)
Query: 23 VIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTE 82
++VK+ +++ G+ + G HAE +AL A G +T YITLEPC + G TPPC++
Sbjct: 1 MLVKDDQVVGEGWHRRAGEPHAERNALAQA---GERARGATAYITLEPCCHQGRTPPCSD 57
Query: 83 ALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGI 142
ALI++G+ +V+ A+ DPNPLV+GKG+AQL +AGI+ + GLMQ +A +N GF RM G
Sbjct: 58 ALIEAGVSRVVAAMRDPNPLVAGKGLAQLEAAGIATEYGLMQAQAEALNPGFTKRMAEGR 117
Query: 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNV 202
P++R K+A SLD +T++ + SQWITS+ +R D RARS AILTGIGT+L D+P +NV
Sbjct: 118 PYIRCKLAMSLDGRTAMASGESQWITSEAARLDVQRLRARSSAILTGIGTLLADDPSMNV 177
Query: 203 R------SIKTSHQ---PYRIVIDSYLRIDPFFRVLK-GGGSCIFTATDLPMKRKILEDL 252
R ++ Q P R+V+D L+ P ++LK G + + ++ D P+ L+
Sbjct: 178 RLSAEELGLEADLQPPTPVRVVLDPALKTPPTAKMLKLPGPTLLLSSDDEPLHAAALDAA 237
Query: 253 GHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPIL 312
G +VI L N ++L V+ L ++++NE+ +E+G L AL+ + +DEL++Y++P +
Sbjct: 238 GAQVISLAANGCNLNLDEVLTVLAEQELNEVLLESGATLAGALLEKQLIDELVIYMAPHI 297
Query: 313 IGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
+G+ A +F LP + ++I L+ +++K+GPD+RI A
Sbjct: 298 MGDSARGLFHLPLLKQMSQRIGLQISDLRKVGPDLRITA 336
>gi|146310543|ref|YP_001175617.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter sp. 638]
gi|145317419|gb|ABP59566.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Enterobacter sp.
638]
Length = 367
Score = 259 bits (663), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 146/360 (40%), Positives = 215/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGVIVGEGFHYRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L GI V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCEALIDAGVARVVAAMQDPNPQVAGRGLYRLQQEGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM + +N GF RM+ G P++++K+ +SLD +T++ N SQW+TS +SR D
Sbjct: 124 HGLMMADTEALNKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWVTSPQSRRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P + VR + + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSETVLADDPAMTVRWDELNQDTQALYPQENLRQPLRIVIDSQNRVTPAHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G +F T R+ E + I++P + G +DL +++ LGK+++N + +EA
Sbjct: 244 IVQQPGETLFARTKED-DRQWPEHV--RSIMVPEHKGHLDLVVLMMLLGKQQVNSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G EA +F LP L +LKF +I+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYVAPKLLGHEARGLFALPGLEKLADAPQLKFSDIRPVGPDV 360
>gi|432800697|ref|ZP_20034687.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE84]
gi|431351286|gb|ELG38076.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE84]
Length = 367
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
R +S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RVQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|300918206|ref|ZP_07134813.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 115-1]
gi|432368393|ref|ZP_19611498.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE10]
gi|432529782|ref|ZP_19766826.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE233]
gi|432532603|ref|ZP_19769603.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE234]
gi|300414657|gb|EFJ97967.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 115-1]
gi|430888859|gb|ELC11530.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE10]
gi|431057173|gb|ELD66643.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE233]
gi|431063795|gb|ELD73009.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE234]
Length = 367
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 149/365 (40%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVMPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 355
Query: 342 IGPDI 346
+GPD+
Sbjct: 356 VGPDV 360
>gi|444945602|ref|ZP_21264024.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0839]
gi|444951124|ref|ZP_21269351.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0848]
gi|444565043|gb|ELV41944.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0839]
gi|444571678|gb|ELV48152.1| riboflavin biosynthesis protein RibD [Escherichia coli 99.0848]
Length = 367
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMISEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR----SIKTS--------HQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR ++T QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDVQTQALYPQHHLRQPVRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|422835171|ref|ZP_16883228.1| riboflavin biosynthesis protein ribD [Escherichia coli E101]
gi|371612976|gb|EHO01479.1| riboflavin biosynthesis protein ribD [Escherichia coli E101]
Length = 367
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|443642093|ref|ZP_21125943.1| Riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
syringae B64]
gi|443282110|gb|ELS41115.1| Riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
syringae B64]
Length = 378
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 217/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV+E RI+ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+++G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALVEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGIGVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESEARALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +L+G TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 250 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 306 EAGPRLAGAFSRLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRSVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|331651348|ref|ZP_08352373.1| riboflavin biosynthesis protein RibD [Escherichia coli M718]
gi|331051089|gb|EGI23141.1| riboflavin biosynthesis protein RibD [Escherichia coli M718]
Length = 367
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHH 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|377578766|ref|ZP_09807741.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia hermannii NBRC 105704]
gi|377539849|dbj|GAB52906.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia hermannii NBRC 105704]
Length = 367
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 150/360 (41%), Positives = 215/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ +SPNP VGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTSPNPNVGCVIVRDGEVVGEGFHYRAGEPHAEVHALRMA---GDKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI G+ +V+ A+ DPNP V+G+G+ +L GI V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCDALIAVGVSRVVAAMQDPNPQVAGRGLYRLKQEGIEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P+V++K+ +SLD +T++ + SQWITS ESR D +
Sbjct: 124 HGLMMNEAEALNKGFLKRMRTGFPFVQLKLGASLDGRTAMASGESQWITSAESRRDVQRF 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTSHQ----------PYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + + Q P RIVIDS R+ P +
Sbjct: 184 RAQSSAILTSSATVLADDPSLTVRWNELDAATQALYPQDQVRMPTRIVIDSQNRVTPDHK 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G T P + E G + +P + G +DL +++ LGKR+IN + +EA
Sbjct: 244 IIHQPGETWLARTQ-PDDTQWPE--GVTQLPVPAHNGHLDLVVLMMLLGKRQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G +L+ AL+ G VDE++LYI+P L+G +A +FTLP L L+F EI+ +GPD+
Sbjct: 301 GAELSGALLQAGVVDEIVLYIAPKLLGNDARGLFTLPGLEKLVDAPSLRFSEIRPVGPDL 360
>gi|300721779|ref|YP_003711057.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Xenorhabdus nematophila ATCC 19061]
gi|297628274|emb|CBJ88835.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Xenorhabdus nematophila ATCC 19061]
Length = 369
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 147/365 (40%), Positives = 220/365 (60%), Gaps = 20/365 (5%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A + +SPNP VGCVIVK++ I+ G+ G HAE+ AL A G
Sbjct: 9 MSRALELAYQGRFTTSPNPNVGCVIVKDEEIVGEGFHLRAGEPHAEVHALRMA---GEKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V++A+ DPNP V+G+G+ +L AGI+V+
Sbjct: 66 KGATAYVTLEPCSHHGKTPPCADALIAAGLSRVVVAMQDPNPQVAGRGLYKLQQAGIAVE 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +A +N GF RM+ G P++++K+ SSLD +T+L + SQWITS ++R D
Sbjct: 126 HGLMMDQAESLNKGFLKRMRTGFPYLQLKLGSSLDGRTALSSGESQWITSPQARQDVQTL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR----SIKTS--------HQPYRIVIDSYLRIDPFFR 227
RA+ AIL+ TVL D+P + VR +T QP RI+ DS R+ P +
Sbjct: 186 RAQCSAILSSSATVLADDPSMTVRWNELDAETQSVYPEERLRQPIRIITDSQNRVTPQHQ 245
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G C T+ K + + I+LP + G VDL ++++LGKR+IN + E
Sbjct: 246 VIQQTGQCWLAYTN---KNEQHWPDNVKQILLPAHGGGVDLVLLMMQLGKRQINSVWAEC 302
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL+LYI+P ++G A +F +P + L + ++++IGPDI
Sbjct: 303 GPALAGALLSLGLVDELILYIAPKVLGNSARGLFDIPELHKLSDAPEFTLFDVKQIGPDI 362
Query: 347 RILAR 351
R+ R
Sbjct: 363 RLRLR 367
>gi|110804436|ref|YP_687956.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella flexneri 5 str. 8401]
gi|417705933|ref|ZP_12355000.1| riboflavin biosynthesis protein RibD [Shigella flexneri VA-6]
gi|417737224|ref|ZP_12385830.1| riboflavin biosynthesis protein RibD [Shigella flexneri 4343-70]
gi|424836903|ref|ZP_18261540.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella flexneri 5a str. M90T]
gi|110613984|gb|ABF02651.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Shigella
flexneri 5 str. 8401]
gi|332760694|gb|EGJ90982.1| riboflavin biosynthesis protein RibD [Shigella flexneri 4343-70]
gi|333008609|gb|EGK28077.1| riboflavin biosynthesis protein RibD [Shigella flexneri VA-6]
gi|383465955|gb|EID60976.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella flexneri 5a str. M90T]
Length = 361
Score = 259 bits (662), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L L+ G VDEL++YI+P L+G +A + +LP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|404400700|ref|ZP_10992284.1| riboflavin biosynthesis protein RibD [Pseudomonas fuscovaginae
UPB0736]
Length = 379
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 209/362 (57%), Gaps = 17/362 (4%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K ++ PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGRYSTHPNPRVGCVIVRDGVVVGEGWHVRAGEPHAEVHALREA---GEQA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 72 RGATAYVTLEPCSHFGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGRGLKRLSDAGIAVH 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA IN GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARAINRGFLKRMEHGLPFVRIKLAMSLDGRTAMASGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RA S +LTG TVL D+ RL VR ++ S P R++ID LR+
Sbjct: 192 RAESSVVLTGADTVLADSARLTVRPAELGLDPELTALAESRPPLRVLIDGRLRVPLDAAF 251
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
+ G + + T + GHEV+ LP + G+VDL+ ++ +L R +N+L +EAG
Sbjct: 252 FQAGPALVVTCAS--TLGSTYQAAGHEVLSLPGSDGQVDLRRLLEQLATRGVNDLLVEAG 309
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A +G VDE ++I+ +G P + + +LK E++ +G D R+
Sbjct: 310 PRLAGAFARQGLVDEYQIFIAGRFLGSTARPLLDWPLERMSEAPRLKITEMRAVGDDWRV 369
Query: 349 LA 350
A
Sbjct: 370 SA 371
>gi|418995456|ref|ZP_13543070.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC1A]
gi|377848846|gb|EHU13822.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC1A]
Length = 361
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNNGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 238 IVQQPGETWFARTQ-DDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + LP L + KF EI+ +GPD+
Sbjct: 295 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCLLPGLEKLADAPQFKFKEIRHVGPDV 354
>gi|352080161|ref|ZP_08951230.1| riboflavin biosynthesis protein RibD [Rhodanobacter sp. 2APBS1]
gi|351684870|gb|EHA67939.1| riboflavin biosynthesis protein RibD [Rhodanobacter sp. 2APBS1]
Length = 365
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 149/361 (41%), Positives = 213/361 (59%), Gaps = 20/361 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVI ++ G+ + G HAE+ AL A G
Sbjct: 13 MAHALRLAERGLYTTQPNPRVGCVIAHGDAVVGTGFHRRAGEPHAEVFALREA---GERA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G TPPC +ALI + + +V++A D P V G+G+ +L AGI+V
Sbjct: 70 RGATAYVTLEPCAHHGRTPPCADALIAASVGRVVVAAEDTFPQVDGRGIGKLRDAGITVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM++ A +N+GFFSR++RG P+VR+K+A SLD +T+L + S+WIT + +R D W
Sbjct: 130 SGLMREAARALNVGFFSRIERGRPFVRLKLAMSLDGRTALASGESKWITGEAARADVQRW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RARS AILTG GTVL DNP L VR + P R+V+D LR RVL G +
Sbjct: 190 RARSSAILTGSGTVLADNPHLTVRLPDGEEFAPPLRVVLDRQLRTPAGSRVLDGSAPTLL 249
Query: 238 ------TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQL 291
T +D +R E + LP +DL+ V+ LG R NE+H+EAG L
Sbjct: 250 LHGAAATCSDDRFERV-------ERVALPTPGDALDLRTVLALLGGRGCNEVHVEAGPTL 302
Query: 292 NTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
AL G VDELLLY++P+L+G+ A + LPP + + +L+ + + +G DIR+
Sbjct: 303 GGALFSAGLVDELLLYVAPLLLGDRARALLQLPPLADMAARWRLQVIDQRMLGADIRLRL 362
Query: 351 R 351
R
Sbjct: 363 R 363
>gi|24111792|ref|NP_706302.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella flexneri 2a str. 301]
gi|30061909|ref|NP_836080.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shigella flexneri 2a str. 2457T]
gi|384541962|ref|YP_005726023.1| putative Pyrimidine reductase, riboflavin biosynthesis [Shigella
flexneri 2002017]
gi|415859412|ref|ZP_11533687.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2a str.
2457T]
gi|417700513|ref|ZP_12349653.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-218]
gi|417721335|ref|ZP_12370183.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-304]
gi|417726738|ref|ZP_12375483.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-671]
gi|417731816|ref|ZP_12380488.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2747-71]
gi|417741839|ref|ZP_12390392.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2930-71]
gi|417826406|ref|ZP_12472985.1| riboflavin biosynthesis protein RibD [Shigella flexneri J1713]
gi|418253583|ref|ZP_12878608.1| riboflavin biosynthesis protein RibD [Shigella flexneri 6603-63]
gi|420318847|ref|ZP_14820704.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2850-71]
gi|420329608|ref|ZP_14831313.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-1770]
gi|420339963|ref|ZP_14841491.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-404]
gi|24050580|gb|AAN42009.1| bifunctional pyrimidine deaminase/reductase [Shigella flexneri 2a
str. 301]
gi|30040153|gb|AAP15886.1| bifunctional pyrimidine deaminase/reductase [Shigella flexneri 2a
str. 2457T]
gi|281599746|gb|ADA72730.1| putative Pyrimidine reductase, riboflavin biosynthesis [Shigella
flexneri 2002017]
gi|313646969|gb|EFS11426.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2a str.
2457T]
gi|332761693|gb|EGJ91972.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2747-71]
gi|332764291|gb|EGJ94527.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-671]
gi|332768519|gb|EGJ98702.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2930-71]
gi|333007890|gb|EGK27366.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-218]
gi|333022021|gb|EGK41266.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-304]
gi|335577170|gb|EGM63398.1| riboflavin biosynthesis protein RibD [Shigella flexneri J1713]
gi|391254764|gb|EIQ13923.1| riboflavin biosynthesis protein RibD [Shigella flexneri 2850-71]
gi|391259138|gb|EIQ18213.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-1770]
gi|391274051|gb|EIQ32866.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-404]
gi|397901457|gb|EJL17803.1| riboflavin biosynthesis protein RibD [Shigella flexneri 6603-63]
Length = 367
Score = 259 bits (661), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L L+ G VDEL++YI+P L+G +A + +LP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|422016452|ref|ZP_16363035.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Providencia burhodogranariea DSM 19968]
gi|414092651|gb|EKT54324.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Providencia burhodogranariea DSM 19968]
Length = 371
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 217/365 (59%), Gaps = 19/365 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A++ +SPNP VGCVIV++ I+ GY + G HAE+ AL A G
Sbjct: 9 MSRALELAQIGCFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMA---GEKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ L AGI +
Sbjct: 66 TGATAYVTLEPCSHHGRTPPCAEALINAGVSRVVAAMQDPNPEVAGRGLYMLSKAGIETE 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ +A +N GF RM+ P++++K+A+SLD KT+L + S+WITS +R D +
Sbjct: 126 TGVLMDQAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALESGESKWITSAAARRDVQVL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL DNP L VR +T QP RIV+D++ ++ +
Sbjct: 186 RAQASAILSTSSTVLVDNPSLTVRWSELPDDVQAIYPEETLRQPIRIVLDNHNKVTADHK 245
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V + G C P I + ++ +L ++ G +DL ++++L KR +N + +EA
Sbjct: 246 VTQLAGECWLIRPK-PDSEAIWQGQVEQIPILADDNG-IDLVILMMQLAKRNVNSIWVEA 303
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G +L +L+ G VDEL++YI+P L+G+ A + LP L K +F + QK+G D+
Sbjct: 304 GPKLAGSLLKLGLVDELIVYIAPKLLGDSARGLVNLPALTQLSDAPKFEFTDAQKVGDDL 363
Query: 347 RILAR 351
R+ R
Sbjct: 364 RVRLR 368
>gi|372276409|ref|ZP_09512445.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Pantoea sp. SL1_M5]
gi|390435693|ref|ZP_10224231.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Pantoea agglomerans IG1]
Length = 366
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 213/362 (58%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV++ ++ G+ + G HAE+ AL A G
Sbjct: 6 MARALELARRGRFTTMPNPNVGCVIVRDGEVVGEGWHQRAGEPHAEVHALRMA---GEKA 62
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 63 RGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEVS 122
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G PW+++K+ +SLD +T++ + SQWITS +R D
Sbjct: 123 HGLMMPEAEVLNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQRL 182
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + + QP R++IDS R+ P R
Sbjct: 183 RAQSAAILSSSATVLADDPSLTVRWSELNAESQALLDEQQLRQPVRVIIDSQNRVTPQHR 242
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G + P ++ D+ I +P ++DL A+++ LG+R+IN + +EA
Sbjct: 243 LIEQPGET-WLMRHQPDQQSWPADVTQ--IAVPLREQQLDLVAMMMLLGQRQINSVWVEA 299
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G E + LP L +F +++++G D+
Sbjct: 300 GATLAGALLQAGLVDELIVYLAPKLLGHEGRGLCKLPGLSQLADAPAFRFSDVRQVGDDL 359
Query: 347 RI 348
R+
Sbjct: 360 RL 361
>gi|194432577|ref|ZP_03064863.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1012]
gi|417674752|ref|ZP_12324185.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 155-74]
gi|194419138|gb|EDX35221.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 1012]
gi|332086036|gb|EGI91200.1| riboflavin biosynthesis protein RibD [Shigella dysenteriae 155-74]
Length = 367
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
R++S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RSQSHAILTSSATVLADDPALIVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPGHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|345298090|ref|YP_004827448.1| riboflavin biosynthesis protein RibD [Enterobacter asburiae LF7a]
gi|345092027|gb|AEN63663.1| riboflavin biosynthesis protein RibD [Enterobacter asburiae LF7a]
Length = 367
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 149/360 (41%), Positives = 213/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ G+ G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L GI V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +A IN GF RM+ G P++++K+ +SLD +T++ N SQWITS ++R D
Sbjct: 124 HGLMMHDAEVINKGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P + VR + + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSETVLADDPAMTVRWDELNADTQALYPQENLRQPLRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R E G I++P + G +DL +++ LGK+++N + +EA
Sbjct: 244 IVQQPGETWFARTKAD-DRNWPE--GVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G A +F LP L +LKF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYVAPKLLGNAARGLFVLPGLEKLADAPQLKFSEIRPVGPDV 360
>gi|215485495|ref|YP_002327926.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli O127:H6 str. E2348/69]
gi|312964564|ref|ZP_07778820.1| riboflavin biosynthesis protein RibD [Escherichia coli 2362-75]
gi|417754208|ref|ZP_12402303.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC2B]
gi|419000569|ref|ZP_13548131.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC1B]
gi|419006103|ref|ZP_13553559.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC1C]
gi|419011970|ref|ZP_13559335.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC1D]
gi|419016874|ref|ZP_13564200.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC1E]
gi|419022565|ref|ZP_13569807.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC2A]
gi|419027376|ref|ZP_13574576.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC2C]
gi|419033402|ref|ZP_13580500.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC2D]
gi|419038156|ref|ZP_13585216.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC2E]
gi|215263567|emb|CAS07897.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Escherichia coli O127:H6 str. E2348/69]
gi|312290798|gb|EFR18675.1| riboflavin biosynthesis protein RibD [Escherichia coli 2362-75]
gi|377850904|gb|EHU15859.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC1C]
gi|377854059|gb|EHU18949.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC1B]
gi|377862735|gb|EHU27542.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC1D]
gi|377866848|gb|EHU31612.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC1E]
gi|377868203|gb|EHU32947.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC2A]
gi|377879154|gb|EHU43727.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC2B]
gi|377883821|gb|EHU48339.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC2D]
gi|377885878|gb|EHU50369.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC2C]
gi|377898400|gb|EHU62760.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC2E]
Length = 367
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNNGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQGLYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-DDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + LP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCLLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|24374975|ref|NP_719018.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase RibD [Shewanella oneidensis MR-1]
gi|24349701|gb|AAN56462.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase RibD [Shewanella oneidensis MR-1]
Length = 381
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 152/367 (41%), Positives = 208/367 (56%), Gaps = 20/367 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIV + +I+ GY + G HAE+ AL A G
Sbjct: 11 MSRAIQLARKGFYTTRPNPSVGCVIVNDNQIVGEGYHQKAGEPHAEVHALRMA---GELA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V G+G+ L AGI V
Sbjct: 68 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIQVD 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+PWV +K+A+SLD KT+L N S+WIT E+R D
Sbjct: 128 VGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEARRDVQRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
R RSCA++TGI TVL D+P LNVR S QP R+V+DS R+ P
Sbjct: 188 RLRSCALITGIETVLADDPSLNVRYSELGSLRAQLSESQVLQPLRVVLDSRARM-PITAA 246
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
L S I + + + L V + LP G++ L A++ LGK N++ IE
Sbjct: 247 LFAIESPILLVSTVSYSSDFMVQLPAHVTCLQLPAIEGRISLSALLSYLGK-SCNQVLIE 305
Query: 287 AGYQLNTALILEGCVDELLLYIS-PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A I G DEL+LY + IL G+ N+ LP + + LK + +K+G D
Sbjct: 306 AGATLAGAFIGSGLADELVLYQAMKILGGQGRNLLELPDYQMMADIPTLKLVDERKVGAD 365
Query: 346 IRILARF 352
R R
Sbjct: 366 TRFTLRL 372
>gi|417710952|ref|ZP_12359959.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-272]
gi|417715619|ref|ZP_12364555.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-227]
gi|333010856|gb|EGK30282.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-272]
gi|333021355|gb|EGK40608.1| riboflavin biosynthesis protein RibD [Shigella flexneri K-227]
Length = 367
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGESWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L L+ G VDEL++YI+P L+G +A + +LP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGVLLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|398845171|ref|ZP_10602214.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM84]
gi|398253825|gb|EJN38939.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM84]
Length = 376
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 209/366 (57%), Gaps = 26/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGVYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GERA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 70 RGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLADAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 130 SGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LT +VL DN R+ VR ++ S P R++ID +LR+ PF
Sbjct: 190 RARSSVVLTSAASVLADNARMTVRGAELGLDEETTALALSRTPLRVLIDGHLRLPLDAPF 249
Query: 226 FRVLKGGGSCIFTAT-DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
F + G + + TA D P + GHE++ LP + G VDLQA++ L R +NE+
Sbjct: 250 F---QAGPALVVTAMGDDPR----YAEAGHELLNLPGSNGHVDLQALMQVLAARGVNEIL 302
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
+EAG L A G +DE L+++ +G P + + +LK E++ +G
Sbjct: 303 LEAGAGLVGAFAQHGLIDEYQLFVAGTFLGSQARPLLDWPLSKMSEAPRLKITEMRAVGD 362
Query: 345 DIRILA 350
D R+ A
Sbjct: 363 DWRVTA 368
>gi|117919545|ref|YP_868737.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shewanella sp. ANA-3]
gi|117611877|gb|ABK47331.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shewanella sp. ANA-3]
Length = 381
Score = 258 bits (660), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 150/367 (40%), Positives = 213/367 (58%), Gaps = 20/367 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ +I+ GY + G HAE+ AL A G
Sbjct: 11 MSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA---GELA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V G+G+ L AGI V
Sbjct: 68 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIEVD 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+PWV +K+A+SLD KT+L N S+WIT E+R D
Sbjct: 128 VGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEARRDVQRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-------SIKTSH----QPYRIVIDSYLRIDPFFRV 228
R R+CA++TGI TVL D P LNVR +++ S QP R+++DS R+ P
Sbjct: 188 RLRACALVTGIETVLADAPSLNVRYSELGSLNLQLSEAQILQPLRVILDSRCRM-PITAA 246
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
L S I + P + L V + LP G++ L A++ LGK N++ IE
Sbjct: 247 LLAIESPILLVSTEPYSPAFMAQLPAHVTCLQLPAIDGRISLPALLSYLGK-SCNQVLIE 305
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A I +G DEL+LY + ++G + N+ LP + + LK + +K+G D
Sbjct: 306 AGATLAGAFIGDGLADELVLYQAMKILGAQGRNLLELPDYQMMADIPTLKLVDERKVGAD 365
Query: 346 IRILARF 352
+R R
Sbjct: 366 MRFTLRL 372
>gi|389796187|ref|ZP_10199243.1| riboflavin biosynthesis protein RibD [Rhodanobacter sp. 116-2]
gi|388448827|gb|EIM04807.1| riboflavin biosynthesis protein RibD [Rhodanobacter sp. 116-2]
Length = 353
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 149/361 (41%), Positives = 213/361 (59%), Gaps = 20/361 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVI ++ G+ + G HAE+ AL A G
Sbjct: 1 MAHALRLAERGLYTTQPNPRVGCVIAHGDAVVGTGFHRRAGEPHAEVFALREA---GERA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G TPPC +ALI + + +V++A D P V G+G+ +L AGI+V
Sbjct: 58 RGATAYVTLEPCAHHGRTPPCADALIAASVGRVVVAAEDTFPQVDGRGIGKLRDAGITVA 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM++ A +N+GFFSR++RG P+VR+K+A SLD +T+L + S+WIT + +R D W
Sbjct: 118 SGLMREAARALNVGFFSRIERGRPFVRLKLAMSLDGRTALASGESKWITGEAARADVQRW 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RARS AILTG GTVL DNP L VR + P R+V+D LR RVL G +
Sbjct: 178 RARSSAILTGSGTVLADNPHLTVRLPDGEEFAPPLRVVLDRQLRTPAGSRVLDGSAPTLL 237
Query: 238 ------TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQL 291
T +D +R E + LP +DL+ V+ LG R NE+H+EAG L
Sbjct: 238 LHGAAATCSDDRFERV-------ERVALPTPGDALDLRTVLALLGGRGCNEVHVEAGPTL 290
Query: 292 NTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
AL G VDELLLY++P+L+G+ A + LPP + + +L+ + + +G DIR+
Sbjct: 291 GGALFSAGLVDELLLYVAPLLLGDRARALLQLPPLADMAARWRLQVIDQRMLGADIRLRL 350
Query: 351 R 351
R
Sbjct: 351 R 351
>gi|170680144|ref|YP_001742551.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli SMS-3-5]
gi|300937023|ref|ZP_07151889.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 21-1]
gi|422830629|ref|ZP_16878785.1| riboflavin biosynthesis protein ribD [Escherichia coli B093]
gi|432678833|ref|ZP_19914236.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE143]
gi|170517862|gb|ACB16040.1| riboflavin biosynthesis protein RibD [Escherichia coli SMS-3-5]
gi|300457854|gb|EFK21347.1| riboflavin biosynthesis protein RibD [Escherichia coli MS 21-1]
gi|371604325|gb|EHN92954.1| riboflavin biosynthesis protein ribD [Escherichia coli B093]
gi|431225026|gb|ELF22235.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE143]
Length = 367
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ + GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGETVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-DDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + +LP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|389751940|ref|ZP_10191128.1| riboflavin biosynthesis protein RibD [Rhodanobacter sp. 115]
gi|388433623|gb|EIL90588.1| riboflavin biosynthesis protein RibD [Rhodanobacter sp. 115]
Length = 389
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 149/383 (38%), Positives = 212/383 (55%), Gaps = 39/383 (10%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVI + ++ G+ + G HAE+ AL A G
Sbjct: 11 MAHALRLAERGLFTTQPNPRVGCVIAQGAEVVGAGFHQRAGEPHAEVFALREA---GERA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G TPPC +AL+ +G+ +V+IA DP P V+G+G+ +L +AGI V+
Sbjct: 68 RGATAYVTLEPCAHHGRTPPCADALVAAGVARVVIAAEDPFPKVAGRGIEKLRAAGIVVE 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A E+NIGFFSR++RG P+VR+K+A SLD +T+L N S+WIT +R D W
Sbjct: 128 NGLLREQARELNIGFFSRIERGRPFVRVKLAMSLDGRTALANGESKWITGAAARADVQRW 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------------------------SIKTSHQPY 212
RARS AILTG GTVL DNPRL R S P
Sbjct: 188 RARSSAILTGSGTVLADNPRLTARLNEGFSLSPMGRGQGEGRVLATDSPDAEAMASVPPL 247
Query: 213 RIVIDSYLRIDPFFRVLKGGGSCIF---TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQ 269
R+V+D +LR P VL + A P R + V+ N DL
Sbjct: 248 RVVLDRHLRTPPDSHVLDDSAPTLLLHGVAAACPDDR--FSQVERAVVAERNE--AFDLS 303
Query: 270 AVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSL 328
AV+ L +NE+H+EAG L AL G DELLLY++PIL+G+ A + LP +
Sbjct: 304 AVLALLAAHDVNEVHVEAGPTLCGALFAAGLADELLLYVAPILLGDSARPLLKLPSLADM 363
Query: 329 DKKIKLKFHEIQKIGPDIRILAR 351
+ +L+ + + +G D R+ R
Sbjct: 364 AARWRLQLCDQRMLGQDQRLRFR 386
>gi|149378281|ref|ZP_01895992.1| riboflavin biosynthesis protein RibD [Marinobacter algicola DG893]
gi|149357446|gb|EDM45957.1| riboflavin biosynthesis protein RibD [Marinobacter algicola DG893]
Length = 371
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 144/363 (39%), Positives = 208/363 (57%), Gaps = 19/363 (5%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q A + ++ PNPRVGCVI + +++ G+ + G HAE AL A G D
Sbjct: 10 MARAVQLAWRGRYSTHPNPRVGCVIARGSKVLGEGWHERAGEAHAETRALSQA---GPDA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +ALI++GI V A DPNP VSG+G+ L AGI V
Sbjct: 67 RGATAYVTLEPCSHFGRTPPCAKALIEAGIAHVFAATKDPNPSVSGRGLDMLREAGIRVT 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GL+ +EA +N GF RM G P+VR+K+A+SLD +T++ + SQWIT ESR D
Sbjct: 127 EGLLAEEAVRLNPGFMKRMNVGRPYVRLKMAASLDGRTAMASGESQWITGSESRRDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSHQPYRIVIDSYLRIDPFFRVLK 230
RA S A+LTG+GTVL DNP L VR + + S QP R++ D R P +L+
Sbjct: 187 RAISDAVLTGVGTVLADNPSLTVRRTELGDIGDATEPSRQPLRVIADRDARTPPGATILQ 246
Query: 231 GGGSCIFTAT----DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
GG ++ A+ P + +G + +N +D++ ++ LG+ INEL +E
Sbjct: 247 GGNVQVYCASPTLATAPAQDLAALGVGLTGVAWKDN--GIDVRELLDSLGELGINELLVE 304
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
AG L I E VDEL LY +P+ +G P S+ K++ K + +++G D
Sbjct: 305 AGPTLAGTFISERLVDELWLYQAPVFLGSTGRPTANLPLESMADKVQWKVLDRRQLGEDQ 364
Query: 347 RIL 349
R++
Sbjct: 365 RLI 367
>gi|378768290|ref|YP_005196761.1| riboflavin biosynthesis protein RibD [Pantoea ananatis LMG 5342]
gi|386014894|ref|YP_005933171.1| riboflavin biosynthesis protein ribD [Pantoea ananatis AJ13355]
gi|386080423|ref|YP_005993948.1| riboflavin biosynthesis protein ribD [Pantoea ananatis PA13]
gi|327392953|dbj|BAK10375.1| riboflavin biosynthesis protein ribD [Pantoea ananatis AJ13355]
gi|354989604|gb|AER33728.1| riboflavin biosynthesis protein ribD [Pantoea ananatis PA13]
gi|365187774|emb|CCF10724.1| riboflavin biosynthesis protein RibD [Pantoea ananatis LMG 5342]
Length = 367
Score = 258 bits (659), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 215/365 (58%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ +I+ G+ + G HAE+ AL A G
Sbjct: 7 MARALELARRGRFTTTPNPNVGCVIVRDGQIVGEGWHQRAGEPHAEVHALRMA---GDRA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +EA +N GF RM+ G PW+++K+ +SLD +T++ + SQWITS +R D
Sbjct: 124 HGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL DNP L VR + QP R+++DS R+ P +
Sbjct: 184 RAQSSAILSSSATVLADNPSLTVRWSELDSESQRLVDEAELRQPVRVIVDSQNRVTPDHK 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIV---LPNNLGKVDLQAVIIELGKRKINELH 284
+++ G M++++ + E + +P ++DL A+++ LG+R+IN +
Sbjct: 244 LIEQLGETWL------MRQQVDDRHWPETVTQIPVPLRDSQLDLVALMMVLGQRQINSVW 297
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG L ALI G VDEL++Y++P L+G +A + L L F +I+++G
Sbjct: 298 VEAGATLAGALIQAGLVDELIVYVAPKLLGNDARGLCQLAGLTQLADAPVFAFRDIRQVG 357
Query: 344 PDIRI 348
D+R+
Sbjct: 358 DDVRL 362
>gi|71735090|ref|YP_276623.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|416018829|ref|ZP_11565757.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
glycinea str. B076]
gi|416024440|ref|ZP_11568501.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422403477|ref|ZP_16480535.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
glycinea str. race 4]
gi|71555643|gb|AAZ34854.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|320322801|gb|EFW78894.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
glycinea str. B076]
gi|320330413|gb|EFW86392.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330874037|gb|EGH08186.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 378
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 215/365 (58%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 13 MARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAGIGVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P++R+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 250 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + + ++L +++ +G D
Sbjct: 306 EAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|113969440|ref|YP_733233.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella sp. MR-4]
gi|113884124|gb|ABI38176.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella sp. MR-4]
Length = 381
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 150/367 (40%), Positives = 212/367 (57%), Gaps = 20/367 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ +I+ GY + G HAE+ AL A G
Sbjct: 11 MSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA---GELA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V G+G+ L AGI V
Sbjct: 68 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIQVD 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+PWV +K+A+SLD KT+L N S+WIT E+R D
Sbjct: 128 VGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEARRDVQRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-------SIKTSH----QPYRIVIDSYLRIDPFFRV 228
R R+CA++TGI TVL D+P LNVR S + S QP R+++DS R+ P
Sbjct: 188 RLRACALVTGIDTVLADDPSLNVRYSELGSLSSQLSEAQILQPLRVILDSRCRM-PITAA 246
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
L S + + P + L V + LP G++ L A++ LGK N++ IE
Sbjct: 247 LLAIESPMLLVSTEPYSPAFMAQLPAHVTCLQLPAIDGRISLPALLSYLGK-SCNQVLIE 305
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A I +G DEL+LY + ++G + N+ LP + + LK + +K+G D
Sbjct: 306 AGATLAGAFIGDGLADELVLYQAMKILGAQGRNLLELPDYQMMADIPTLKLVDERKVGAD 365
Query: 346 IRILARF 352
R R
Sbjct: 366 TRFTLRL 372
>gi|373950496|ref|ZP_09610457.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS183]
gi|386323668|ref|YP_006019785.1| riboflavin biosynthesis protein RibD [Shewanella baltica BA175]
gi|333817813|gb|AEG10479.1| riboflavin biosynthesis protein RibD [Shewanella baltica BA175]
gi|373887096|gb|EHQ15988.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS183]
Length = 384
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 213/364 (58%), Gaps = 20/364 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ +I+ GY + G HAE+ AL A G
Sbjct: 15 MSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA---GEHA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V+G+G+ L AGI V
Sbjct: 72 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAGIEVD 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+P V +K+A+SLD KT+L N S+WIT ESR D
Sbjct: 132 VGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRDVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----SIKTS------HQPYRIVIDSYLRIDPFFRV 228
R RSCA++TGI T+L D+P LNVR IK S QP R+++DS R+ P
Sbjct: 192 RLRSCALVTGIETILADDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRARL-PLSAA 250
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
S I + + + L V +VLP G+V L ++ LG+ N + +E
Sbjct: 251 CLAIVSPILLVSTVAYPAEFQAQLLSHVSCLVLPAIAGRVSLPELLSYLGQ-SCNHVLVE 309
Query: 287 AGYQLNTALILEGCVDELLLYIS-PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A + EG DEL+LY + IL G+ N+ LP + ++ + L + +K+GPD
Sbjct: 310 AGATLAGAFLAEGLADELMLYQAMKILGGQGRNLLQLPDYKTMAQIPALTLVDERKLGPD 369
Query: 346 IRIL 349
R++
Sbjct: 370 TRLI 373
>gi|407700680|ref|YP_006825467.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
'Black Sea 11']
gi|407249827|gb|AFT79012.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
'Black Sea 11']
Length = 379
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 214/364 (58%), Gaps = 18/364 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAA-AQGY 57
M A+Q A+ +SPNPRVGCVIV E +++ GY G HAE+ AL A+ A+ +
Sbjct: 13 MAKAIQLAQQGRFTTSPNPRVGCVIVDENNQLLGQGYHIQAGTPHAEVHALRQASNARPH 72
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+T Y+TLEPCS+FG TPPC +AL+++ + +V+IA+ DPNP V G G++ L AGI
Sbjct: 73 GAKGATAYVTLEPCSHFGRTPPCAKALVEAEVARVVIAMTDPNPNVCGNGISLLQDAGIE 132
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V +M E+ +N GF RM G P+VR+K+ SLD K +L N SQWIT E+R D
Sbjct: 133 VVSDVMAAESAALNPGFIKRMLTGKPFVRVKLGISLDGKIALQNGVSQWITGAEARRDVQ 192
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPFFRV 228
+RA+SC +LTG GTV DNP L VR + QP R+V+DS R+ +
Sbjct: 193 QYRAQSCVVLTGSGTVQADNPSLLVREKEAQFENYPLDHIRQPARVVVDSKSRLRRDY-T 251
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
L G+ FTAT + + + L GK+DL A++ LG ++ NE+ +EAG
Sbjct: 252 LFNDGNITFTAT----SQAHPDTATQHYLQLDEKDGKLDLHALMSALGDKQYNEVWVEAG 307
Query: 289 YQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
L AL+ EG VDEL+ Y +P L+G+ +M LP SL++ I L E +++G DI+
Sbjct: 308 PGLAGALLQEGLVDELICYQAPKLLGDKGVSMVNLPAFTSLNECISLSLIENRQVGNDIK 367
Query: 348 ILAR 351
++ R
Sbjct: 368 LIFR 371
>gi|302189350|ref|ZP_07266023.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
syringae 642]
Length = 378
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 217/365 (59%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A+ + S+ PNPRVGCVIV+E RI+ G+ G HAE+ AL A G
Sbjct: 13 MARAIELARKGLYSTHPNPRVGCVIVREGRIVGEGWHARAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI++G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALIEAGLTRVVAAMQDPNPEVSGRGLLRLMNAGIGVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ E+ +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESESRALNKGFLKRMETGLPYVRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +L+G TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLSGADTVLADKARLTVRPDELGLDAELTALAAARAPLRVLIDGRLRVPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 250 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRRLMGELAARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+I+ +G + P + + ++L E++ +G D
Sbjct: 306 EAGPRLAGAFARLGLVDEFQLFIAGKFLGSSARPLLDLPLAQMSEALELNIVEMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|422597937|ref|ZP_16672204.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|330988221|gb|EGH86324.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 378
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 215/365 (58%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 13 MARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPEVSGRGLLRLMNAGIGVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P++R+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 250 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + + ++L +++ +G D
Sbjct: 306 EAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|308185884|ref|YP_003930015.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Pantoea vagans C9-1]
gi|308056394|gb|ADO08566.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Pantoea vagans C9-1]
Length = 366
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 213/362 (58%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV++ ++ G+ + G HAE+ AL A G
Sbjct: 6 MARALELARRGRFTTMPNPNVGCVIVRDGEVVGEGWHQRAGEPHAEVHALRMA---GEKA 62
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 63 RGATAYVTLEPCSHHGRTPPCCDALIAAGVIRVVAAMQDPNPQVAGRGLHRLHQAGIDVS 122
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G PW+++K+ +SLD +T++ + SQWITS+ +R D
Sbjct: 123 HGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSEAARRDVQRL 182
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + + QP R++IDS R+ P R
Sbjct: 183 RAQSAAILSSSATVLADDPSLTVRWSELNTDSQALVDEQQLRQPVRVIIDSQNRVTPQHR 242
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G + P ++ D+ I +P ++DL A+++ LG+R+IN + +EA
Sbjct: 243 LISQPGET-WLMRHQPDQQLWPADVTQ--IAVPLREQQLDLVAMMMLLGQRQINSVWVEA 299
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G E + LP L +F +++++G D+
Sbjct: 300 GATLAGALLQAGLVDELIVYLAPKLLGHEGRGLCQLPGLSQLADAPAFRFSDVRQVGDDL 359
Query: 347 RI 348
R+
Sbjct: 360 RL 361
>gi|170725743|ref|YP_001759769.1| riboflavin biosynthesis protein RibD [Shewanella woodyi ATCC 51908]
gi|169811090|gb|ACA85674.1| riboflavin biosynthesis protein RibD [Shewanella woodyi ATCC 51908]
Length = 379
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 217/364 (59%), Gaps = 17/364 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQG-YD 58
M+ A++ A+ + + PNP VGCV+ K+ +I+ G+ GG HAE+ AL A +
Sbjct: 11 MSRAIKLARQGLYTTQPNPCVGCVVTKDGQILGEGFHIKAGGPHAEVHALAMANSDSNLG 70
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPCS++G TPPC EALI + + +V++A+ DPNP V G+G+A L AGI V
Sbjct: 71 AKGATAYVTLEPCSHYGRTPPCAEALIHNKLARVVVAVEDPNPQVCGRGIAMLRDAGIQV 130
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
GL+Q EAY+IN GF RM+ G+PWV +K+ASSLD KT+L N +S+WIT E+R D
Sbjct: 131 DVGLLQDEAYKINPGFMKRMETGLPWVTVKLASSLDGKTALANGASKWITGPEARRDVQR 190
Query: 179 WRARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFR 227
RAR CA++TG+ T+L DNP LNVR S HQP R+V+DS R+
Sbjct: 191 LRARHCALVTGVETILADNPSLNVRHSELGSLADRHSESDLHQPLRVVLDSRARVTSDLA 250
Query: 228 VLKGGGSCIFTATD--LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
+ + + D ++++ +V + + G+VDL + LGK + N + I
Sbjct: 251 LFAIESPILLVSCDDYPAIEQQSWPSHVKQVKLNCDESGRVDLNELFKYLGK-QCNSVLI 309
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG L ++I +G DEL+LY + ++G + N+ TLP + ++ + +K + +K+G
Sbjct: 310 EAGATLAGSVIAKGHGDELVLYQALKMLGSSGRNLITLPEYTAMSQIPAIKLVDERKVGA 369
Query: 345 DIRI 348
D R+
Sbjct: 370 DTRL 373
>gi|374314196|ref|YP_005060625.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Serratia
symbiotica str. 'Cinara cedri']
gi|363988422|gb|AEW44613.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Serratia
symbiotica str. 'Cinara cedri']
Length = 369
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 146/364 (40%), Positives = 222/364 (60%), Gaps = 24/364 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAA--AQGY 57
M A + A+L ++PNP VGCVIV+ I+ GY G HAE+ AL A AQG
Sbjct: 8 MAHAFKLARLGRFTTAPNPNVGCVIVRNGVIVGEGYHLRAGEPHAEVHALNMAKEKAQG- 66
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+T Y TLEPCS++G TPPCT+AL+ +GI +V+ AI DPNP V+G+G+ QL A I
Sbjct: 67 ----ATAYTTLEPCSHYGRTPPCTDALVAAGISRVVSAIQDPNPRVTGRGLQQLRKAKIE 122
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V GLM EA INIGF RM+ G+P+V++K+A SLD +T++ + SQWI+S ++R D
Sbjct: 123 VHYGLMSAEAEAINIGFLKRMRTGLPYVQLKLAISLDGRTAMASGQSQWISSSQARQDVQ 182
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPF 225
RA+S +IL+ T+L DNP L VR K QP+RI++DS R+ P
Sbjct: 183 YLRAQSASILSTSATILADNPALTVRWNELDTKIQNLYPQKNLRQPWRIILDSQNRVTPQ 242
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
RV++ G+ + A P K+ +++ E ++ P ++L ++++L KR++N + I
Sbjct: 243 HRVVQQPGTT-WLARLKPDKQVWPKNV--EQLIFPAYNHGINLMTLMMQLAKRQVNSIWI 299
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG +L+ +L+ G VDEL++YI+P L+G+ + + L L + F+ I+++GP
Sbjct: 300 EAGPKLSGSLLQSGLVDELIVYIAPKLLGDHSRGLCHLTGVEQLADAPEFIFNNIKQVGP 359
Query: 345 DIRI 348
D+R+
Sbjct: 360 DLRL 363
>gi|422019672|ref|ZP_16366215.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Providencia alcalifaciens Dmel2]
gi|414102778|gb|EKT64368.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Providencia alcalifaciens Dmel2]
Length = 371
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 214/366 (58%), Gaps = 21/366 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + AK +SPNP VGCVIV++ I+ GY + G HAE+ AL A G
Sbjct: 9 MARAFELAKEGRFTTSPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVYALRMA---GDKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +GI +V+ A+ DPNP V+G+G+ L AGI
Sbjct: 66 KGATAYVTLEPCSHHGRTPPCAEALINAGISRVVAAMQDPNPQVAGRGLYMLNQAGIETA 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
++ +EA +N GF RM+ P++++K+A+SLD KT+L N S+WITS +R D +
Sbjct: 126 SNILLEEAEALNRGFLKRMRTAFPYIQLKLAASLDGKTALANGESKWITSPAARKDVQVL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TV+ D+P L VR +T QP RIV+D + R+ P +
Sbjct: 186 RAQASAILSTSNTVIADDPALTVRWNELPADIQAKYPEETLRQPIRIVLDRHNRVTPDHK 245
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
V + G C P + G E + +P + +DL ++++L KR +N + +E
Sbjct: 246 VTQLEGECWLVR---PTPDTTVTWQGDVEQLAIPADDNGIDLVILMMQLAKRNVNSIWVE 302
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGEAY-NMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG +L +L+ G VDEL++YI+P L+G+A + +LP +L K +F +++K+G D
Sbjct: 303 AGAKLAGSLLKLGLVDELIVYIAPKLLGDAARGLVSLPELSALSDAPKFEFTDVEKVGSD 362
Query: 346 IRILAR 351
+R+ R
Sbjct: 363 LRVRLR 368
>gi|126175361|ref|YP_001051510.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS155]
gi|386342107|ref|YP_006038473.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS117]
gi|125998566|gb|ABN62641.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shewanella baltica OS155]
gi|334864508|gb|AEH14979.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS117]
Length = 384
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 213/364 (58%), Gaps = 20/364 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ +I+ GY + G HAE+ AL A G
Sbjct: 15 MSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA---GEHA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V+G+G+ L AGI V
Sbjct: 72 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAGIEVD 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+P V +K+A+SLD KT+L N S+WIT ESR D
Sbjct: 132 VGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRDVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----SIKTS------HQPYRIVIDSYLRIDPFFRV 228
R RSCA++TGI T+L D+P LNVR IK S QP R+++DS R+ P
Sbjct: 192 RLRSCALVTGIETILVDDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRARL-PLSAA 250
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
S I + + K L V +VLP G+V L ++ LG+ N + +E
Sbjct: 251 CLAVVSPILLVSTVAYPAKFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ-SCNHVLVE 309
Query: 287 AGYQLNTALILEGCVDELLLYIS-PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A + +G DEL+LY + IL G+ N+ LP + ++ + L + +K+GPD
Sbjct: 310 AGATLAGAFLAQGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALMLVDERKLGPD 369
Query: 346 IRIL 349
R++
Sbjct: 370 TRLI 373
>gi|392977853|ref|YP_006476441.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter cloacae subsp. dissolvens SDM]
gi|392323786|gb|AFM58739.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter cloacae subsp. dissolvens SDM]
Length = 367
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 208/353 (58%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L GI V GLM ++A IN
Sbjct: 76 SHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGIDVSHGLMMQDAEAIN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ N SQWITS ++R D RA+S AILT
Sbjct: 136 KGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQRLRAQSHAILTSSE 195
Query: 192 TVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + QP RI++DS+ R+ P R+++ G
Sbjct: 196 TVLADDPAMTVRWNELNADTQALYPQENLRQPLRIIVDSHNRVTPEHRIVQQPGETWIAR 255
Query: 240 T-----DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
T D P G I++P + G +DL +++ LGK+++N + +EAG L A
Sbjct: 256 TKDDSRDWPE--------GVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVEAGPTLAGA 307
Query: 295 LILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
L+ G VDEL++Y++P L+G +A +F LP L +LKF EI+ +GPD+
Sbjct: 308 LLQAGLVDELIVYVAPKLLGSDARGLFVLPGLEKLADAPQLKFSEIRPVGPDV 360
>gi|298156564|gb|EFH97660.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas savastanoi pv. savastanoi NCPPB 3335]
Length = 366
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 215/365 (58%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 1 MARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA---GELA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 58 RGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAGIGVQ 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P++R+K+A SLD +T++ + SQWIT E+R+
Sbjct: 118 CGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 178 RAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAARPPLRVLIDGRLRVPLDAPF 237
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 238 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVNEVLV 293
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + + ++L +++ +G D
Sbjct: 294 EAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRAVGND 353
Query: 346 IRILA 350
R++A
Sbjct: 354 WRVIA 358
>gi|431928637|ref|YP_007241671.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
stutzeri RCH2]
gi|431826924|gb|AGA88041.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas
stutzeri RCH2]
Length = 366
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 142/366 (38%), Positives = 207/366 (56%), Gaps = 25/366 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + S+ PNPRVGCVIV ++ G+ G HAE+ AL A G
Sbjct: 8 MARALQLARKGLYSTHPNPRVGCVIVAAGELVGEGWHVRAGEPHAEVHALRQA---GERA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ L SAGI V
Sbjct: 65 RGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGRGLQLLRSAGIEVV 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA EIN GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R +
Sbjct: 125 SGVLEAEAREINCGFIKRMESGLPFVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RARS +LTG TVL D RL VR ++ P R+++D LR+ PF
Sbjct: 185 RARSSVVLTGADTVLMDAARLTVRGDELGLDAETTALALQRPPLRVLVDGQLRVPLDAPF 244
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ AT + GHE++VL +VDL A++ ELG R NE+ +
Sbjct: 245 FQA-----GPALVATTVAGHEGAFAAAGHELLVLGQE--RVDLTALLRELGARGANEVLV 297
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G +DE ++++ +G + P + + +LK +I+ +G D
Sbjct: 298 EAGPRLVGAFASLGLIDEYQIFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDD 357
Query: 346 IRILAR 351
+I+AR
Sbjct: 358 WKIVAR 363
>gi|399909306|ref|ZP_10777858.1| riboflavin biosynthesis protein RibD [Halomonas sp. KM-1]
Length = 378
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 219/366 (59%), Gaps = 18/366 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + PNPRVGCV+VK ++++ G+ + G HAE+ AL
Sbjct: 10 MARALQLARRGRYTTHPNPRVGCVLVKNRKMVGEGWHERAGEPHAEVHAL---NMAQAAA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC AL ++G+K+V++A+ DPNP V+G+G+A L AGI V
Sbjct: 67 RGATAYVTLEPCSHHGRTGPCAVALTEAGVKRVVVAMQDPNPEVAGRGIAMLREAGIEVT 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N GF SRM R P+VR+K+A SLD +T++ + SQWIT +R +
Sbjct: 127 VGLLEAEAQALNPGFISRMTRRRPFVRLKMAMSLDGRTAMQSGESQWITGPHARAEVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK---------TSHQPYRIVIDSYLRIDPFFRVLK 230
RA + AI+TG+ +++ DN RL VR+ + QP R+V+D+ LR+ L+
Sbjct: 187 RASASAIMTGVDSIIFDNSRLTVRAAQLGLDDAEVIAERQPLRVVVDTQLRLPQAAACLR 246
Query: 231 GGGSCIFTATD--LPMKRKILEDLGHEVIVLPN-NLGKVDLQAVIIELGKRK-INELHIE 286
G + P +R LE G EV+VLP + G+VDL A++ L +++ +NEL +E
Sbjct: 247 EPGRTLVATVSGYDPERRSRLEAAGAEVLVLPTGDDGRVDLAALLRYLSEQELVNELLLE 306
Query: 287 AGYQLNTALILEGCVDELLLYISPILI-GEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
G L A++ G VDE+ L+++P L+ GEA +F LP + ++ L+ +++ +G D
Sbjct: 307 TGATLAGAMLDAGLVDEMQLFVAPTLLGGEARPLFALPGLTRMAQQRPLEILDMRAVGRD 366
Query: 346 IRILAR 351
RI AR
Sbjct: 367 WRITAR 372
>gi|153001671|ref|YP_001367352.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS185]
gi|151366289|gb|ABS09289.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS185]
Length = 384
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 212/364 (58%), Gaps = 20/364 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ +I+ GY + G HAE+ AL A G
Sbjct: 15 MSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA---GEHA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V+G+G+ L AGI V
Sbjct: 72 RGATAYVTLEPCSHYGRTPPCAFALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAGIEVD 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+P V +K+A+SLD KT+L N S+WIT ESR D
Sbjct: 132 VGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRDVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----SIKTS------HQPYRIVIDSYLRIDPFFRV 228
R RSCA++TGI T+L D+P LNVR IK QP R+++DS R+ P
Sbjct: 192 RLRSCALVTGIETILADDPSLNVRYQELGGIKDCVTEAQLLQPLRVILDSRARL-PLSAA 250
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
S I + + K L V +VLP G+V L ++ LG+ N + +E
Sbjct: 251 CLAVVSPILLVSTVAYPAKFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ-SCNHVLVE 309
Query: 287 AGYQLNTALILEGCVDELLLYIS-PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A + EG DEL+LY + IL G+ N+ LP + ++ + L + +K+GPD
Sbjct: 310 AGATLAGAFLAEGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALMLVDERKLGPD 369
Query: 346 IRIL 349
R++
Sbjct: 370 TRLI 373
>gi|269138330|ref|YP_003295030.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda EIB202]
gi|387867049|ref|YP_005698518.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Edwardsiella tarda FL6-60]
gi|267983990|gb|ACY83819.1| riboflavin biosynthesis protein RibD [Edwardsiella tarda EIB202]
gi|304558362|gb|ADM41026.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Edwardsiella tarda FL6-60]
Length = 373
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 134/354 (37%), Positives = 212/354 (59%), Gaps = 19/354 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++PNP VGCV+V++ RI+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 25 FTTTPNPNVGCVLVRDDRIVGEGFHLRAGEPHAEVHALRMA---GELARGATAYVTLEPC 81
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGISV+ G+M EA IN
Sbjct: 82 SHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYRLQQAGISVRHGVMLAEAEAIN 141
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P+V++K+ +SLD +T++ + SQWITS +R D +RA+S AIL+
Sbjct: 142 KGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSAAARADVQRYRAQSSAILSSSA 201
Query: 192 TVLKDNPRLNVR--SIKTS----------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P L VR S+ + QP R+++DS+ R+ P R++ G +
Sbjct: 202 TVLADDPALTVRWASLDEATQRLYPQEHLRQPLRVIVDSHNRVTPQHRLITQPGETLLAR 261
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
D P + + + +P + +DL ++++LGK ++N + +EAG +L AL+ G
Sbjct: 262 VD-PDTQAWPSSVSQ--LAVPRHGEGLDLVLLMMQLGKMQLNSVWVEAGPRLAGALLQAG 318
Query: 300 CVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
VDEL++Y++P L+G+ A + LP L L F ++ ++G D+R+ R
Sbjct: 319 LVDELIVYLAPTLLGDAARGLCHLPGLDRLGDAPALTFSDVTRVGNDLRLTLRM 372
>gi|325928452|ref|ZP_08189643.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
perforans 91-118]
gi|325541169|gb|EGD12720.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
perforans 91-118]
Length = 369
Score = 258 bits (658), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 136/352 (38%), Positives = 215/352 (61%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR---AAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI +G+ +V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLREAGIEVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WIT +R D W
Sbjct: 133 SGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGSRARADGQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTV+ D+P + VR + P R+V+D+ LR + +G ++
Sbjct: 193 RARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLRTLACRNIRQGSAPTLY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+ + L+D + + +P G+ DL AV+ L +R INE+H+EAG L+ AL+
Sbjct: 253 LHGE-NVAAPSLDD--AQFLAVPLQAGRFDLPAVLALLAERGINEVHVEAGAMLSGALLQ 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + ++ ++ L+ +++++G D+R+
Sbjct: 310 AGLVDELLVYMAPVLLGDTARPLVAGLGIETMAQRHALQLLDVRQLGQDLRL 361
>gi|410614855|ref|ZP_11325892.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
psychrophila 170]
gi|410165561|dbj|GAC39781.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
psychrophila 170]
Length = 378
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 147/368 (39%), Positives = 217/368 (58%), Gaps = 23/368 (6%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIV-KEKRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M A+Q AK +SPNP VGCVI ++ I+ G+ K G HAE+ AL A G
Sbjct: 12 MARAIQLAKCGEYTTSPNPNVGCVISDRQGVILGEGWHKKAGAPHAEVHALQQA---GEF 68
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPCS++G TPPC +ALI++G+ +V+ A+ DPNP+VSGKG+ +L AGI
Sbjct: 69 SKGATAYVTLEPCSHYGKTPPCADALIEAGVTRVVAAMVDPNPVVSGKGLIKLQEAGIKT 128
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ GL+Q A ++N GF RM+ G+PWV +K+A+SLD KT+L N SQWIT ++R D
Sbjct: 129 EHGLLQASAEQLNRGFIKRMRTGLPWVTVKLAASLDGKTALKNGISQWITGPQARQDVQR 188
Query: 179 WRARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFR 227
RARSCAIL+G GTV+ DNP LNVR + K QP R+++D ++
Sbjct: 189 HRARSCAILSGSGTVIADNPMLNVRYSELNLNDDVLAQKDLRQPLRVLLDGRNQLPASLN 248
Query: 228 VLKGG----GSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINEL 283
L+ + P + + + N K+DL V+ +LG+ ++N +
Sbjct: 249 CLRSFENNLAGNVLLVNGQPSEHLFEQHVSQWQAPFIGN--KLDLNKVMTKLGEMQLNNI 306
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKI 342
+EAG +L AL+ +DEL+LY +P LIG A N+F P +D+ I+L + +I+++
Sbjct: 307 WVEAGGKLAGALLQNKLIDELILYQAPKLIGGAGQNLFDSIPIEVMDEVIELTWTDIRQV 366
Query: 343 GPDIRILA 350
G DI++ A
Sbjct: 367 GSDIKMTA 374
>gi|85712650|ref|ZP_01043696.1| Riboflavin-specific deaminase/reductase [Idiomarina baltica OS145]
gi|85693500|gb|EAQ31452.1| Riboflavin-specific deaminase/reductase [Idiomarina baltica OS145]
Length = 373
Score = 257 bits (657), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 148/363 (40%), Positives = 210/363 (57%), Gaps = 18/363 (4%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNP VGCVIVK+ I+ G+ + G HAE+ AL A Q
Sbjct: 14 MHRALELARKGRFTTGPNPAVGCVIVKDASIVGEGWHQKAGEPHAEVFALRQAGTQAK-- 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
++T Y+TLEPCS+ G TPPC +ALI + + +V+IA+ DPNP+VSG+G+ +L A I V+
Sbjct: 72 -HATAYVTLEPCSHQGRTPPCVDALINAEVARVVIAMQDPNPVVSGRGIHKLHDADIEVR 130
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + A +N GF RMQ +P+VR+K+ASSLD +T+L N SQWIT +R D +W
Sbjct: 131 VGLFETAARALNPGFIHRMQTQLPYVRVKLASSLDGRTALSNGVSQWITGAAARADVQVW 190
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH---------QPYRIVIDSYLRIDPFFRVLK 230
RA++ AILTG TVL DNPRLNVR + + QP R++ID RI R+ +
Sbjct: 191 RAQADAILTGADTVLVDNPRLNVRPEQWPNGIEKPLFFKQPVRVIIDGKNRIHDDLRLFE 250
Query: 231 GGGSC-IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGY 289
+ T+ P R HE+I ++ G+VDL + EL R+IN + E G
Sbjct: 251 VETPVFVVRTTEAPASR---HRHCHEIIAKADSQGRVDLHDALKELALREINLVWTECGA 307
Query: 290 QLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
QL AL V+EL+ Y + ++G +A +M L LD + E + +G DIR+
Sbjct: 308 QLAGALFNAQVVNELVYYQANKVLGSDARSMIALQELTQLDDALSFNVLERRMVGEDIRV 367
Query: 349 LAR 351
+A+
Sbjct: 368 IAQ 370
>gi|296101536|ref|YP_003611682.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter cloacae subsp. cloacae ATCC
13047]
gi|295055995|gb|ADF60733.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter cloacae subsp. cloacae ATCC
13047]
Length = 367
Score = 257 bits (657), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 143/350 (40%), Positives = 208/350 (59%), Gaps = 23/350 (6%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L GI V GLM ++A IN
Sbjct: 76 SHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGIDVSHGLMMQDAEAIN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ N SQWITS ++R D RA+S AILT
Sbjct: 136 KGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQHLRAQSHAILTSSE 195
Query: 192 TVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + QP RIVIDS R+ P R+++ G
Sbjct: 196 TVLADDPAMTVRWNELNADTQALYPQENLRQPLRIVIDSQNRVTPEHRIVQQPGETWIAR 255
Query: 240 TDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
T ++ D V I++P + G +DL +++ LGK+++N + +EAG L AL+
Sbjct: 256 T-----KEDSRDWPESVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVEAGPTLAGALLQ 310
Query: 298 EGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G VDEL++Y++P L+G +A +F LP L +LKF EI+ +GPD+
Sbjct: 311 AGLVDELIVYVAPKLLGSDARGLFVLPGLEKLADAPQLKFSEIRPVGPDV 360
>gi|21241517|ref|NP_641099.1| 5-amino-6-uracil reductase [Xanthomonas axonopodis pv. citri str.
306]
gi|21106864|gb|AAM35635.1| riboflavin-specific deaminase [Xanthomonas axonopodis pv. citri
str. 306]
Length = 369
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 137/352 (38%), Positives = 222/352 (63%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR---AAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+++V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIEAGVRRVVAAMADPFPQVNGGGFALLREAGIEVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+MQ +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WITS ++R D W
Sbjct: 133 SGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARADVQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTV+ D+P + VR + + P R+V+D+ LR + +G ++
Sbjct: 193 RARAGAILTGAGTVMADDPSMTVRLGEDTPVVPPLRVVLDARLRTLACRNIRQGDAPTLY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+ + + L+D + + +P + G+ DL AV+ L +R INE+H+E G L+ AL+
Sbjct: 253 LHGE-NVAAQSLDD--AQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATLSGALLQ 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + ++ ++ L+ +++++G D+R+
Sbjct: 310 AGLVDELLVYMAPVLLGDTAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRL 361
>gi|417246820|ref|ZP_12039921.1| riboflavin biosynthesis protein RibD [Escherichia coli 9.0111]
gi|386209448|gb|EII19935.1| riboflavin biosynthesis protein RibD [Escherichia coli 9.0111]
Length = 367
Score = 257 bits (656), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 146/360 (40%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L +GI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQSGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM E ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEVEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR ++ QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQSFRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + +LP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQVGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|385330233|ref|YP_005884184.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Marinobacter adhaerens HP15]
gi|311693383|gb|ADP96256.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Marinobacter adhaerens HP15]
Length = 371
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 145/362 (40%), Positives = 204/362 (56%), Gaps = 17/362 (4%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q A + ++ PNPRVGCVI + ++ G+ + G HAE AL A G D
Sbjct: 10 MARAVQLAWRGRYSTHPNPRVGCVIARGDLVLGEGWHERAGEAHAETRALSQA---GPDA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC ALI +G+ V A DPNP VSG+G+ L AGI V
Sbjct: 67 RGATAYVTLEPCSHFGRTPPCARALIDAGVAHVYAATKDPNPSVSGRGLDMLREAGIRVT 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GL+ +EA +N GF RM G PWVR+K+A+SLD +T++ + SQWIT E+R D
Sbjct: 127 EGLLAEEAARLNPGFMKRMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARRDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSHQPYRIVIDSYLRIDPFFRVLK 230
RA S AILTG+GTVL D+P L VR + + S QP R++ D R ++L+
Sbjct: 187 RAISDAILTGVGTVLADDPSLTVRREELGDIGDATEPSRQPLRVIADRDARTPSSAKILQ 246
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGK---VDLQAVIIELGKRKINELHIEA 287
GG +F A+ + +DL I L K +DL ++ LG+ INEL +EA
Sbjct: 247 GGNVQVFCASST-LATAPAQDLAALGISLTGVAWKDNGIDLAELLDSLGELGINELLVEA 305
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
G L I E VDEL LY +P+ +G P ++ K++ K + +++G D R
Sbjct: 306 GPTLAGTFINENLVDELWLYQAPVFLGSTGRPTAHLPLETMADKVQWKVLDRRQVGEDQR 365
Query: 348 IL 349
++
Sbjct: 366 LI 367
>gi|37527755|ref|NP_931100.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Photorhabdus luminescens subsp. laumondii
TTO1]
gi|36787191|emb|CAE16271.1| riboflavin biosynthesis protein [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
(riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase)] [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 369
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 229/365 (62%), Gaps = 20/365 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ +SPNP VGCVIV + +I+ G+ G HAE+ AL A G
Sbjct: 8 MARALELARQGRFTTSPNPNVGCVIVHDGQIVGEGFHLRSGEPHAEVYALQIA---GDKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V+
Sbjct: 65 KGATVYVTLEPCSHHGKTPPCADALIAAGVSRVVAAMQDPNPQVAGRGLYKLQQAGIAVE 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +EA +N GF RM+ G P++++K+A+SLD +T+L + S+WITS ++R D +
Sbjct: 125 HGLMMEEAESLNRGFLKRMRTGFPYIQLKMATSLDGRTALASGESKWITSPQARCDVQKF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+ AIL+ TVL D+P L VR I+ + QP R+++DS R+ P +
Sbjct: 185 RAQCSAILSSSSTVLADDPHLTVRWSELDAEIQAVYPEENLCQPVRVIVDSQNRVSPQHQ 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G C T + + + E++ E I+LP + VDL +++++LGKR+IN + E
Sbjct: 245 VIQQPGYCWLARTKVD-EHDLSENV--EQILLPAHGIGVDLVSLMMQLGKRQINTVWTEC 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL+LY++P ++G+ A +FT+P +L + + ++Q++GPD+
Sbjct: 302 GALLAGALLTLGLVDELVLYVAPKVLGDTARGLFTIPELKNLAEAPEFDIFDVQQVGPDL 361
Query: 347 RILAR 351
R+ R
Sbjct: 362 RLHLR 366
>gi|291616522|ref|YP_003519264.1| RibD [Pantoea ananatis LMG 20103]
gi|291151552|gb|ADD76136.1| RibD [Pantoea ananatis LMG 20103]
Length = 367
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 215/365 (58%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ +I+ G+ + G HAE+ AL A G
Sbjct: 7 MARALELARRGRFTTTPNPNVGCVIVRDGQIVGEGWHQRAGEPHAEVHALRMA---GDRA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLHRLHQAGIEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +EA +N GF RM+ G PW+++K+ +SLD +T++ + SQWITS +R D
Sbjct: 124 HGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL DNP L VR + QP R+++DS R+ P +
Sbjct: 184 RAQSSAILSSSATVLADNPSLTVRWSELDSESQRLVDEAELRQPVRVIVDSQNRVTPDHK 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIV---LPNNLGKVDLQAVIIELGKRKINELH 284
+++ G M++++ + E + +P ++DL A+++ LG+R+IN +
Sbjct: 244 LIEQLGETWL------MRQQVDDRHWPETVTQIPVPLRDSQLDLVALMMVLGQRQINSVW 297
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG L ALI G VDEL++Y++P L+G +A + L L F +++++G
Sbjct: 298 VEAGATLAGALIQAGLVDELIVYVAPKLLGNDARGLCQLAGLTQLADAPVFAFRDLRQVG 357
Query: 344 PDIRI 348
D+R+
Sbjct: 358 DDVRL 362
>gi|90410896|ref|ZP_01218910.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
profundum 3TCK]
gi|90328109|gb|EAS44420.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
profundum 3TCK]
Length = 371
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 220/366 (60%), Gaps = 20/366 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCVI + I+ G+ G HAE+ AL A G
Sbjct: 10 MLRAIELAKRGRFTTAPNPNVGCVIAQGSTIVGEGFHYQAGQPHAEVFAL---RAAGEQT 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +ALI + + +V+ A+ DPNP V G+G+ L AGI V+
Sbjct: 67 KGATAYVTLEPCSHFGRTPPCAQALINANVSRVVCAMVDPNPKVGGRGIEMLQIAGIEVQ 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ +A +N GF RM+ G+P+V++K+A+SLD +T+L N S+WIT E+R D +
Sbjct: 127 TGLLAADAQALNPGFIKRMKTGLPYVQLKLAASLDGRTALSNGDSKWITGPEARADVQRF 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RAR+ AIL+ TV+ D+P LNVR + QP R++IDS R+ P F+
Sbjct: 187 RARAGAILSTSSTVIADDPSLNVRWSELGEPVHAEYPEVALRQPTRVIIDSKNRVTPDFK 246
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIV-LPNNLGKVDLQAVIIELGKRKINELHIE 286
+ G + + M ++ D +VI+ ++ +++L ++++EL K+ IN + +E
Sbjct: 247 LFSLAGKTLLARAE--MGQETWSDSVSQVIIPKEDDSEQLNLTSLMLELAKQDINHIWVE 304
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG +L L+ G VDEL++Y +P L+G ++ ++ L S+ + + L+ +++ IGPD
Sbjct: 305 AGAELAGGLLASGLVDELIIYQAPKLMGCDSRSLINLKGLTSMSQVLSLEITDVRMIGPD 364
Query: 346 IRILAR 351
+RI+AR
Sbjct: 365 LRIIAR 370
>gi|134105070|pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
gi|134105071|pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
Length = 380
Score = 257 bits (656), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 19/348 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ GY + G HAE+ AL A G +T Y+TLEPC
Sbjct: 24 FTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXA---GEKAKGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ + DPNP V+G+G+ +L AGI V GL EA ++N
Sbjct: 81 SHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGIDVSHGLXXSEAEQLN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF R + G P++++K+ +SLD +T+ + SQWITS ++R D + RA+S AILT
Sbjct: 141 KGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQLLRAQSHAILTSSA 200
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P L VR + QP RIVIDS R+ P R+++ G F
Sbjct: 201 TVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFAR 260
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
T R+ E + +++P + G +DL + +LGK++IN + +EAG L AL+ G
Sbjct: 261 TQ-EDSREWPETV--RTLLIPEHKGHLDLVVLXXQLGKQQINSIWVEAGPTLAGALLQAG 317
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 318 LVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 365
>gi|294667125|ref|ZP_06732350.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
gi|292603135|gb|EFF46561.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 10535]
Length = 369
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 220/352 (62%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGACVGEGFHQRAGGPHAEVFALR---AAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIEAGVMRVVAAMADPFPQVNGGGFALLREAGIDVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+MQ +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WITS ++R D W
Sbjct: 133 SGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARADVQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTV+ D+P + VR + S P R+V+D+ LR + +G ++
Sbjct: 193 RARAGAILTGAGTVMADDPSMTVRMGEDSPVVPPLRVVLDAGLRTLACRNIRQGDAPTLY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+ + L+D + + +P + G+ DL AV+ L +R INE+H+E G L+ AL+
Sbjct: 253 LHGE-DVSAPSLDD--AQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATLSGALLQ 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + ++ ++ L+ +++++G D+R+
Sbjct: 310 AGLVDELLVYMAPVLLGDSAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRL 361
>gi|392422575|ref|YP_006459179.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri CCUG
29243]
gi|390984763|gb|AFM34756.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri CCUG
29243]
Length = 366
Score = 256 bits (655), Expect = 8e-66, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 206/366 (56%), Gaps = 25/366 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A + S+ PNPRVGCVIV + ++ G+ G HAE+ AL A G
Sbjct: 8 MARALQLACRGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQA---GERA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EAL+K+G+ +V+ A+ DPNP V+G G+ L SAGI V
Sbjct: 65 RGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLELLRSAGIEVA 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R +
Sbjct: 125 SGVLEGEARELNAGFIKRMESGLPFVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RARS +LTG TVL D RL VR ++ QP R+++D LR+ PF
Sbjct: 185 RARSSVVLTGADTVLMDAARLTVRGAELGLDAETTALAMQRQPLRVLVDGQLRVPLDAPF 244
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ AT + GHE++VL +VDL A++ ELG R NE+ +
Sbjct: 245 FQA-----GPALVATTVAGHEGAFAAAGHELLVLGQE--RVDLTALLRELGARGANEVLV 297
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G +DE ++++ +G + P + + +LK +I+ +G D
Sbjct: 298 EAGPRLVGAFAGLGLIDEYQIFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDD 357
Query: 346 IRILAR 351
+ +AR
Sbjct: 358 WKFVAR 363
>gi|126030525|pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli
gi|126030526|pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli
gi|134105114|pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
gi|134105115|pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
Length = 402
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 19/348 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ GY + G HAE+ AL A G +T Y+TLEPC
Sbjct: 46 FTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXA---GEKAKGATAYVTLEPC 102
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ + DPNP V+G+G+ +L AGI V GL EA ++N
Sbjct: 103 SHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGIDVSHGLXXSEAEQLN 162
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF R + G P++++K+ +SLD +T+ + SQWITS ++R D + RA+S AILT
Sbjct: 163 KGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQLLRAQSHAILTSSA 222
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P L VR + QP RIVIDS R+ P R+++ G F
Sbjct: 223 TVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFAR 282
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
T R+ E + +++P + G +DL + +LGK++IN + +EAG L AL+ G
Sbjct: 283 TQ-EDSREWPETV--RTLLIPEHKGHLDLVVLXXQLGKQQINSIWVEAGPTLAGALLQAG 339
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 340 LVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 387
>gi|294627697|ref|ZP_06706279.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
gi|292598049|gb|EFF42204.1| 5-amino-6-uracil reductase [Xanthomonas fuscans subsp. aurantifolii
str. ICPB 11122]
Length = 369
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 220/352 (62%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR---AAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIEAGVMRVVAAMADPFPQVNGGGFALLREAGIDVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+MQ +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WITS ++R D W
Sbjct: 133 SGVMQAQARTLNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITSADARADVQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTV+ D+P + VR + S P R+V+D+ LR + +G ++
Sbjct: 193 RARAGAILTGAGTVMADDPSMTVRMGEDSPVVPPLRVVLDAGLRTLACRNIRQGDAPTLY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+ + L+D + + +P + G+ DL AV+ L +R INE+H+E G L+ AL+
Sbjct: 253 LHGE-DVSAPSLDD--AQFLAMPLHAGRFDLAAVLALLAERGINEVHVEGGATLSGALLQ 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + ++ ++ L+ +++++G D+R+
Sbjct: 310 AGLVDELLVYVAPVLLGDSAKPLLAGLGIETMAQRAALQLLDVRQLGQDLRL 361
>gi|389795901|ref|ZP_10199009.1| riboflavin biosynthesis protein RibD [Rhodanobacter fulvus Jip2]
gi|388430084|gb|EIL87289.1| riboflavin biosynthesis protein RibD [Rhodanobacter fulvus Jip2]
Length = 400
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 155/397 (39%), Positives = 221/397 (55%), Gaps = 57/397 (14%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + ++PNPRVGCVI ++ G+ + G HAE+ AL A G
Sbjct: 13 MAHALRLAERGLYTTAPNPRVGCVIAHGDEVVGTGFHQRAGEPHAEVYALREA---GERA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G TPPC +ALI +G+ +V++A DP V G+GV++L +AGI+V+
Sbjct: 70 RGATAYVTLEPCAHHGRTPPCADALIAAGVGRVVVAAEDPFDQVDGRGVSRLRAAGIAVE 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM++ A E+NIGFFSR++RG P+VR+K+A SLD +T+L N S+WIT + +R D W
Sbjct: 130 TGLMREAARELNIGFFSRIERGRPFVRVKLAMSLDGRTALANGDSKWITGEAARADVQRW 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------------------------- 208
RARS AIL+G GTVL DNPRL VR +S
Sbjct: 190 RARSSAILSGSGTVLADNPRLTVRLASSSLSPGSAGGEGWGEGAAFEARAPLTQPSPPSK 249
Query: 209 -----HQPYRIVIDSYLRIDPFFRVLKGG-------GSCIFTATDLPMKRKILEDLGH-E 255
+P R+++D LR VL G G + TD + H +
Sbjct: 250 LGGEGFKPLRVILDRQLRTPAGSHVLDGSAPTLLIHGESASSCTD--------DRFAHIK 301
Query: 256 VIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIG- 314
+ LP DL AV+ L +R +NE+H+EAG +L AL G VDELLLYI+P+L+G
Sbjct: 302 RLALPTPADAFDLHAVLALLAQRDVNEIHVEAGPRLCGALFAAGLVDELLLYIAPLLLGS 361
Query: 315 EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
EA + LP + + L+ + + +GPDIR+ R
Sbjct: 362 EAAPLMHLPSLTDMASRWSLRLLDQRMLGPDIRLRLR 398
>gi|409422473|ref|ZP_11259570.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. HYS]
Length = 376
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 214/365 (58%), Gaps = 24/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A+ + S+ PNPRVGCVIV++ +++ G+ G HAE+ AL A G
Sbjct: 13 MARAIELARKGLYSTHPNPRVGCVIVRDGQVVGEGWHVRAGEPHAEVYALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 70 RGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLKRLADAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 130 SGVLEAEARTLNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LT +VL DN R+ VR ++ + P R++ID LR+ PF
Sbjct: 190 RARSSVVLTSAESVLADNARMTVRGDELGLDPQTTALALARAPLRVLIDGRLRVPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + TA + + GHE++ LP + G+VDL A+++EL R +NE+ +
Sbjct: 250 F---QAGPALVVTAAEADSR---YAQAGHELLRLPGSEGRVDLPALMLELAARGVNEVLV 303
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG L A +G +DE ++++ ++G + P ++ + L+ E++ +G D
Sbjct: 304 EAGAGLVGAFARQGLIDEYQIFVAGRILGSSARPLLDWPLETMSQAPYLQITEMRAVGDD 363
Query: 346 IRILA 350
R+ A
Sbjct: 364 WRVTA 368
>gi|419384553|ref|ZP_13925457.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC14D]
gi|378237131|gb|EHX97158.1| riboflavin biosynthesis protein RibD [Escherichia coli DEC14D]
Length = 355
Score = 256 bits (655), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 140/342 (40%), Positives = 203/342 (59%), Gaps = 30/342 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 244 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 295
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLP 323
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP
Sbjct: 296 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLP 337
>gi|386622780|ref|YP_006142508.1| riboflavin biosynthesis protein RibD [Escherichia coli O7:K1 str.
CE10]
gi|349736518|gb|AEQ11224.1| riboflavin biosynthesis protein RibD [Escherichia coli O7:K1 str.
CE10]
Length = 367
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-DDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + +LP L + KF EI+ +G D+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCSLPGLEKLADAPQFKFKEIRHVGSDV 360
>gi|420362044|ref|ZP_14862970.1| riboflavin biosynthesis protein RibD [Shigella sonnei 4822-66]
gi|391296971|gb|EIQ55047.1| riboflavin biosynthesis protein RibD [Shigella sonnei 4822-66]
Length = 361
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 148/365 (40%), Positives = 214/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VG VIVK+ I+ GY + G HAE+ AL A G
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGGVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRQ 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED +++P + G +DL ++++LGK++IN
Sbjct: 238 IVQQPGETWFARTQ--------EDSSEWPETVRTLLIPEHKGHLDLVVLMMQLGKQQINS 289
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+
Sbjct: 290 IWVEAGPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRH 349
Query: 342 IGPDI 346
+GPD+
Sbjct: 350 VGPDV 354
>gi|422010071|ref|ZP_16357053.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Providencia rettgeri Dmel1]
gi|414092244|gb|EKT53923.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Providencia rettgeri Dmel1]
Length = 371
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 137/356 (38%), Positives = 211/356 (59%), Gaps = 18/356 (5%)
Query: 9 KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITL 68
K +SPNP VGCVIV++ I+ GY + G HAE+ AL A G +T Y+TL
Sbjct: 18 KGRFTTSPNPNVGCVIVRDGAIVGEGYHQKAGEPHAEVHALRMA---GEKAQGATAYVTL 74
Query: 69 EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAY 128
EPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ L AGI + ++ +A
Sbjct: 75 EPCSHHGRTPPCAEALINAGVSRVVAAMQDPNPQVAGRGLYMLSQAGIETRSNVLLDDAE 134
Query: 129 EINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILT 188
N GF RM+ G P++++K+A+SLD KT+L + S+WITS +R D RA + AIL+
Sbjct: 135 AANRGFLKRMRTGFPYIQLKLAASLDGKTALESGESKWITSPAARKDVQALRAEASAILS 194
Query: 189 GIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCI 236
TV+ D+P L VR I+ + QP RIV+D++ R+ P +V + G C
Sbjct: 195 TSSTVVADDPSLTVRWNELPSDIQQVYPESQVRQPIRIVLDNHNRVTPDHKVTQLDGECW 254
Query: 237 FTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
+ P + + + E I +P + DL ++++L KR +N + +EAG +L +L+
Sbjct: 255 LVRS-TPDENAVWQG-KIEQIAIPADENGTDLVILMMQLAKRNVNSIWVEAGAKLAGSLL 312
Query: 297 LEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G VDEL++YI+P L+G+ A + PP +L K +F E++++GPD+R+ R
Sbjct: 313 KLGLVDELIVYIAPKLLGDSARGLVDFPPLNALVDAPKFEFTEVKQVGPDLRVRLR 368
>gi|406040017|ref|ZP_11047372.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 366
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 144/357 (40%), Positives = 221/357 (61%), Gaps = 23/357 (6%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL +AK ++ + PNP VGCVIVK+ +II G T GG+HAE+ AL A G
Sbjct: 15 MAQALAEAKTALYRTRPNPAVGCVIVKDDQIIGRGATAPVGGSHAEVFALREA---GDRA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++FG TPPC EAL+++ + +V+IA DPNPLV+GKG L +AGI+ +
Sbjct: 72 EGATAYVTLEPCAHFGRTPPCAEALVRAKVTRVVIATLDPNPLVAGKGQKILNNAGITTQ 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++++A E+N GF M G+P+VR+K+ASSLD +T++ + S+WIT ++R D W
Sbjct: 132 VGVLEQDAIELNRGFLKVMAGGLPYVRLKVASSLDGRTAMASGESKWITGVDARLDVQYW 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSHQPYRIVIDSYLRIDPFFRVLKGGG 233
RARS ++TGI TVL D+ +LNVR I QP R+++D R+ ++L
Sbjct: 192 RARSAVVITGIQTVLADDCQLNVRVLADVEDISAIAQPKRLILDRQGRLPLTAKILHAPE 251
Query: 234 SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLN 292
S + P +++ L DLG V+ LP L+ ++ L K + ++ +EAG L
Sbjct: 252 SLMVMG---PFRQE-LADLG--VLQLPVQ----SLRELLATLSKEYHLYDVMVEAGTTLA 301
Query: 293 TALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
TA + E VDE++ YI+P L+G+ A MF+ H + ++++ K ++ +IG DIR+
Sbjct: 302 TAFLQEKLVDEMISYIAPTLLGQSARAMFSADLH-KMSEQLRFKLFDVTQIGQDIRL 357
>gi|289647764|ref|ZP_06479107.1| riboflavin biosynthesis protein RibD [Pseudomonas syringae pv.
aesculi str. 2250]
Length = 378
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 215/365 (58%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 13 MARALELARNGLYSTHPNPRVGCVIVRDGQIVGEGWHVRAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP VSG+G+ +L++AGI V+
Sbjct: 70 RGATAYVTLEPCSHQGRTPPCADALVNAGLARVVAAMQDPNPDVSGRGLLRLMNAGIGVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G P++R+K+A SLD +T++ + SQWIT E+R+
Sbjct: 130 CGVLESEARALNKGFLKRMETGQPYIRVKMAMSLDGRTAMASGESQWITGPEARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +LTG TVL D RL VR ++ + P R++ID LR+ PF
Sbjct: 190 RAQSSVVLTGADTVLADKARLTVRPDELGLNAELTALAAAPPPLRVLIDGRLRVPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ GS + R ++ GHE++ L ++ G VDL+ ++ EL R +NE+ +
Sbjct: 250 FQA----GSALVVTCAAASARGRYQEEGHEMLALADSAGHVDLRKLMGELATRGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + + ++L +++ +G D
Sbjct: 306 EAGPRLAGAFARLGLVDEFQIFIAGKFLGSSARPLLDLPLAQMSEALELNIVQMRAVGND 365
Query: 346 IRILA 350
R++A
Sbjct: 366 WRVIA 370
>gi|217972396|ref|YP_002357147.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS223]
gi|217497531|gb|ACK45724.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS223]
Length = 384
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 149/364 (40%), Positives = 213/364 (58%), Gaps = 20/364 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ +I+ GY + G HAE+ AL A G
Sbjct: 15 MSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA---GEHA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V+G+G+ L AGI V
Sbjct: 72 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAGIEVD 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+P V +K+A+SLD KT+L N S+WIT ESR D
Sbjct: 132 VGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRDVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----SIKTS------HQPYRIVIDSYLRIDPFFRV 228
R RSCA++TGI T+L D+P LNVR IK S QP R+++DS R+ P
Sbjct: 192 RLRSCALVTGIETILADDPSLNVRYQELGGIKDSVTEAQLLQPLRVILDSRARL-PLSAA 250
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
S I + + + L V +VLP G+V L ++ LG+ N + +E
Sbjct: 251 CLAIVSPIILVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ-SCNHVLVE 309
Query: 287 AGYQLNTALILEGCVDELLLYIS-PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A + +G DEL+LY + IL G+ N+ LP + ++ + L + +K+GPD
Sbjct: 310 AGATLAGAFLAQGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALMLVDERKLGPD 369
Query: 346 IRIL 349
R++
Sbjct: 370 TRLI 373
>gi|398967295|ref|ZP_10681821.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM30]
gi|398144851|gb|EJM33663.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM30]
Length = 377
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 142/366 (38%), Positives = 218/366 (59%), Gaps = 27/366 (7%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV++ +I+ G+ + G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVIVRDGQIVGEGFHERAGEPHAEVHALR---AAGELA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMRDPNPQVAGRGLQRLADAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEAEARQLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA++ A+LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAQAAAVLTGADTVLADGARLTVRADELGLDAEQTALVMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++P + G+VDL ++IEL R +NE+ +
Sbjct: 252 F---KAGPALV--ATCMAVEEQYAN--GPECLIVPGDDGQVDLHQLLIELANRGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG +L A G VDE +++I+ +G A + P Y D +LK EI+ +G
Sbjct: 305 EAGPRLAGAFARLGLVDEFVIFIAGKFLGSTARPLLDWPLAYMKDAP-ELKITEIRAVGD 363
Query: 345 DIRILA 350
D R+ A
Sbjct: 364 DWRVTA 369
>gi|416956593|ref|ZP_11935896.1| pyrimidine deaminase, partial [Burkholderia sp. TJI49]
gi|325522583|gb|EGD01124.1| pyrimidine deaminase [Burkholderia sp. TJI49]
Length = 221
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/204 (58%), Positives = 149/204 (73%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ ++PNPRVGCVIVK +I GYT+ G +HAE+ AL +A A+G+DV STVY+T
Sbjct: 18 ARGMYTTTPNPRVGCVIVKGGDVIGEGYTQPAGHDHAEVQALKDARARGHDVAGSTVYVT 77
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+FG TPPC ALI++ + KV+ A+ DPNP VSG+G+ L AGI V+ GL+ EA
Sbjct: 78 LEPCSHFGRTPPCANALIEARVAKVVAAMEDPNPQVSGRGLGMLRDAGIDVRCGLLAHEA 137
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
E+NIGF SRM RG PWVRMK A++LD +T+L + SQWIT +R D H WRAR+CAIL
Sbjct: 138 GELNIGFVSRMTRGRPWVRMKSAATLDGRTALPSGESQWITGDAARLDGHAWRARACAIL 197
Query: 188 TGIGTVLKDNPRLNVRSIKTSHQP 211
TGIGTV +DNP L VR I T QP
Sbjct: 198 TGIGTVREDNPLLTVRGIDTPRQP 221
>gi|416281033|ref|ZP_11645603.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Shigella boydii ATCC 9905]
gi|320181604|gb|EFW56519.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-5-phosphoribosylaminouracil
reductase [Shigella boydii ATCC 9905]
Length = 367
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 216/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
R++S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RSQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPVRIVIDSQNRVTPGHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TL L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLLGLEKLADAPQFKFKEIRHVGPDV 360
>gi|392956883|ref|ZP_10322409.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacillus macauensis ZFHKF-1]
gi|391877380|gb|EIT85974.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Bacillus macauensis ZFHKF-1]
Length = 360
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 147/358 (41%), Positives = 216/358 (60%), Gaps = 10/358 (2%)
Query: 1 MTLALQQAK-LSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LA++ A+ + ++PNP VG VIVK RI+ G PG HAEI AL A G +
Sbjct: 7 MKLAIENARAMKGQTAPNPMVGAVIVKNGRIVGIGSHLKPGEPHAEIHALRMA---GDEA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST+Y+TLEPCS+ G T PC EALIK+G+KKV+IA DPNPLV+G+GV L AGI V
Sbjct: 64 SESTIYVTLEPCSHVGKTGPCAEALIKAGVKKVVIASLDPNPLVAGRGVTMLREAGIEVV 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++++E++E+N F + P+V +K A +LD KT+ + SQWIT +++R D H+
Sbjct: 124 TGVLEQESWEMNEVFNHFIVHNRPFVTLKAAMTLDGKTATHTMHSQWITGEKAREDVHVL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG--SCIF 237
R+ AIL G+ T+++D+ L R I P R+++DS LRI +VL G + +F
Sbjct: 184 RSEHQAILVGVQTIIEDDAELTAR-IPNGRNPIRMILDSTLRIGMSAKVLCDGKAPTWVF 242
Query: 238 TA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T P KR LE LG +V V+ ++ GKV L V+ LG+ I+ + IEAG LN + +
Sbjct: 243 TTNASSPEKRTALEALGVKVFVVGSHEGKVKLTDVLQTLGEHAISSVFIEAGGTLNASFL 302
Query: 297 LEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+ V+++++Y++P LIG EA F S+ I L+ +G D++I+A F
Sbjct: 303 TQQLVNQVIVYVAPKLIGGKEAPTFFEGLGMASMTNAIPLRKMTASVVGEDVKIIASF 360
>gi|365838367|ref|ZP_09379712.1| riboflavin biosynthesis protein RibD [Hafnia alvei ATCC 51873]
gi|364559916|gb|EHM37877.1| riboflavin biosynthesis protein RibD [Hafnia alvei ATCC 51873]
Length = 373
Score = 256 bits (654), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 204/356 (57%), Gaps = 25/356 (7%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++PNP VGCVIV I+ GY G HAE+ AL A G +T Y+TLEPC
Sbjct: 24 FTTTPNPNVGCVIVLNDEIVGEGYHLRAGEPHAEVHALRMA---GDKARGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA +N
Sbjct: 81 SHHGRTPPCADALVAAGVSRVVAAMQDPNPNVAGRGLFKLQQAGIDVSHGLMMNEAEAVN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P+V++K+A+SLD +T++ + SQWITS +R D +RA+S AIL+
Sbjct: 141 RGFLKRMRTGFPFVQLKMAASLDGRTAMASGESQWITSAAARQDVQRYRAQSSAILSSSA 200
Query: 192 TVLKDNPRLNVR----SIKTSH--------QPYRIVIDSYLRIDPFFRVLKGGGSCIFT- 238
TVL DNP L VR + T QP R+++DS RI P +++ G +
Sbjct: 201 TVLADNPSLTVRWDELDVTTQQAYPRENLRQPLRVIVDSQNRITPEHKLISQAGETLLAR 260
Query: 239 --ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
DL + + + +P +DL ++++LGK +IN + +EAG L AL+
Sbjct: 261 IHPDDLHWPENVKQ------LAIPQYGQGIDLVVLMMQLGKLQINSVWVEAGASLAGALL 314
Query: 297 LEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G VDEL++Y++P L+G+ A + LP L + F E+ +G D+RI+ R
Sbjct: 315 QAGLVDELIIYLAPKLLGDTARGLCVLPGLEQLADAPQFVFSEVMPVGSDLRIVLR 370
>gi|397688289|ref|YP_006525608.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri DSM
10701]
gi|395809845|gb|AFN79250.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri DSM
10701]
Length = 375
Score = 256 bits (653), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 210/365 (57%), Gaps = 23/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + S+ PNPRVGCVIV++ + G+ G HAE+ AL A G
Sbjct: 9 MARALQLARKGLYSTHPNPRVGCVIVRDGERVGEGWHVRAGEPHAEVHALRQA---GDRA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNPLV+G+G+ +L S GI V
Sbjct: 66 RGATAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMRDPNPLVAGRGLERLRSVGIEVA 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+NIGF RM+ G+P++R K+A SLD +T++ + SQWIT +R D
Sbjct: 126 SGVLEGEARELNIGFVKRMEHGLPYLRAKLAMSLDGRTAMASGESQWITGPAARADVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS-----------IKTSHQPYRIVIDSYLRI---DPF 225
RARS A+LTG TVL D+ RL VRS + P R+++D R+ PF
Sbjct: 186 RARSSAVLTGADTVLMDDARLTVRSAELGLDAEQTDLALQRPPLRVLVDGRQRVPLDAPF 245
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ + A+ + + GHE++ L N G+VDL A++ L +R NE+ +
Sbjct: 246 FQA-----GPVLVASASSARAETYRAAGHELLALANAEGRVDLPALLAALAERGANEVLL 300
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G +DE ++++ +G + P + + +LK +I+ +G D
Sbjct: 301 EAGPRLAGAFAALGLIDEYQIFVAAKFLGSSARPLLDLPLERMSEARELKILDIRAVGDD 360
Query: 346 IRILA 350
+I A
Sbjct: 361 WKICA 365
>gi|326793810|ref|YP_004311630.1| riboflavin biosynthesis protein RibD [Marinomonas mediterranea
MMB-1]
gi|326544574|gb|ADZ89794.1| riboflavin biosynthesis protein RibD [Marinomonas mediterranea
MMB-1]
Length = 383
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 221/363 (60%), Gaps = 18/363 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q AK + + PNPRVGCVIVK+ RII G+ G HAE++AL +A V
Sbjct: 12 MSQAVQLAKKGLYTTHPNPRVGCVIVKDDRIIGEGFHARAGEGHAEVNALASAMES---V 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALIK+GI V+ + DPNP V+G+G+A+L AG+ V
Sbjct: 69 EGATAYVTLEPCSHQGKTPPCADALIKAGIAVVVYGMQDPNPQVAGRGLAKLEKAGVQVI 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+++ E +N+GF RM+ G+P++R+K+A SLD +T++ + SQWIT +R D
Sbjct: 129 GPVLENECERLNLGFNKRMREGLPYIRLKMAMSLDGRTAMESGESQWITGSAARLDVQRL 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--------SIKTSHQPYRIVIDSYLRIDPFFRVLKG 231
RA+S AI+TGIG+V+ DNP + VR K+ QP R+++D+ L I P ++LK
Sbjct: 189 RAQSDAIVTGIGSVILDNPSMTVRIDSDDQEVDSKSVRQPLRVIMDTALSIPPEAKILKP 248
Query: 232 GGSCIFTATDLPMKRKILEDL---GHEVIVLP-NNLGKVDLQAVIIELGKRKINELHIEA 287
G + + ++++ + L G + P G++DL + L + INE+ +E
Sbjct: 249 GKEALMFCVEEDIEQEHFDALKKTGVNIEFAPVGEDGRMDLIECMGLLADQGINEVLVET 308
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G +L A + EG VDEL++Y++P L+G +A + LP D ++L+ ++ +G D+
Sbjct: 309 GAELAGAFLREGLVDELVVYVAPKLLGSDARPLMRLPIDVMKD-AVELELESVRSVGNDL 367
Query: 347 RIL 349
+++
Sbjct: 368 KMV 370
>gi|52425429|ref|YP_088566.1| RibD protein [Mannheimia succiniciproducens MBEL55E]
gi|52307481|gb|AAU37981.1| RibD protein [Mannheimia succiniciproducens MBEL55E]
Length = 373
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/369 (39%), Positives = 212/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LA++ A K ++PNP VGCV+VK+ I+ G+ G HAE+ A+ A G +
Sbjct: 12 MQLAIELAEKGQFTTTPNPSVGCVLVKQGEIVGKGFHFKAGEPHAEVMAMREA---GKNA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + LI++G+ KVI A+ DPNP V+G+G+ L AGI
Sbjct: 69 KGATAYVTLEPCSHFGRTPPCAKGLIEAGVVKVIAAMEDPNPSVAGQGLKMLQQAGIETA 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+Q++A +N GF RM+ G+P+V++K+A ++D +T+ SQWIT + +R D
Sbjct: 129 VGLLQEQAERLNRGFLKRMRTGLPYVQLKMAMTIDGRTATSTGESQWITGESARIDVQQE 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ GTVL DNP LNVR +T QP R++IDS +I
Sbjct: 189 RAKASAILSASGTVLADNPSLNVRWEQFPEQLKADYKKETVRQPVRVIIDSKQQISSQLN 248
Query: 228 VLKGGGSCIFTA------TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
+ K TD P E+I L + LQA++IELGKR+IN
Sbjct: 249 LFKIDSPVWLAGIQPRDLTDFPAN--------CEIICLMPEKEQSLLQALMIELGKRQIN 300
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQ 340
+ +EAG +L ALI + VDEL+LYI+P L+G EA + LP L + ++
Sbjct: 301 SVWVEAGAKLAGALIEQNLVDELVLYIAPKLLGDEAKGLCHLPHLTKLADAPLWRLQSME 360
Query: 341 KIGPDIRIL 349
K+G DI+++
Sbjct: 361 KVGDDIKMI 369
>gi|160876409|ref|YP_001555725.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS195]
gi|378709610|ref|YP_005274504.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS678]
gi|160861931|gb|ABX50465.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS195]
gi|315268599|gb|ADT95452.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS678]
Length = 384
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/364 (40%), Positives = 212/364 (58%), Gaps = 20/364 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ +I+ GY + G HAE+ AL A G
Sbjct: 15 MSRAIQLARKGFYTTRPNPCVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA---GEHA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V G+G+ L AGI V
Sbjct: 72 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIEVD 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+P V +K+A+SLD KT+L N S+WIT ESR D
Sbjct: 132 VGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRDVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSH--QPYRIVIDSYLRIDPFFRV 228
R RSCA++TGI T+L D+P LNVR S+ + QP R+++DS R+ P
Sbjct: 192 RLRSCALVTGIETILADDPSLNVRYQELGGLKDSVTEAQLLQPLRVILDSRARL-PLSAA 250
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
S I + + + L V +VLP G+V L ++ LG+ N + +E
Sbjct: 251 CLAIVSPILLVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ-SCNHVLVE 309
Query: 287 AGYQLNTALILEGCVDELLLYIS-PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A + EG DEL+LY + IL G+ N+ LP + ++ + L + +K+GPD
Sbjct: 310 AGATLAGAFLAEGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALTLVDERKLGPD 369
Query: 346 IRIL 349
R++
Sbjct: 370 TRLI 373
>gi|285019600|ref|YP_003377311.1| riboflavin biosynthesis protein RibD [Xanthomonas albilineans GPE
PC73]
gi|283474818|emb|CBA17317.1| probable riboflavin biosynthesis ribd oxidoreductase protein
[Xanthomonas albilineans GPE PC73]
Length = 369
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 131/319 (41%), Positives = 199/319 (62%), Gaps = 9/319 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 12 MAQALRLAERGAYTTRPNPMVGCVIVRDDEQVGEGFHQRAGGPHAEVFALRAA---GEYA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V++A+ DP P V+G G A L AGI+V+
Sbjct: 69 RGATAYVTLEPCAHYGRTPPCALALIEAGVARVVVAMADPFPQVNGGGFALLREAGIAVQ 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM+++A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WIT +R D W
Sbjct: 129 SGLMEEQARALNRGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGAAARQDVQRW 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AIL+G GTVL D+P L VR + + P R+V+D+ LR +V G ++
Sbjct: 189 RARAGAILSGAGTVLADDPVLTVRLGEATEVLPPLRVVLDAQLRTLARSKVRDGAAPTLY 248
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+ + E + + G++DL AV+ L R INE+ +EAG L AL+
Sbjct: 249 LHAPASVPPTLPN---AEFAAVALHEGRLDLDAVLRLLAARGINEVQVEAGATLGGALLR 305
Query: 298 EGCVDELLLYISPILIGEA 316
G VDE+L+Y++P+L+G+A
Sbjct: 306 AGMVDEVLVYLAPVLLGDA 324
>gi|226942824|ref|YP_002797897.1| riboflavin biosynthesis protein RibD [Azotobacter vinelandii DJ]
gi|226717751|gb|ACO76922.1| riboflavin biosynthesis protein RibD [Azotobacter vinelandii DJ]
Length = 361
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 213/366 (58%), Gaps = 25/366 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV RI+ G+ G HAE+ AL A G
Sbjct: 1 MARALELARQGLYSTHPNPRVGCVIVAAGRIVGEGWHVRAGEPHAEVHALRQA---GETA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EAL+ +G+ +V+ A+ DPNP VSG+G+A+L AGI V+
Sbjct: 58 RGATAYVTLEPCSHHGRTPPCAEALVAAGVGRVVAAMQDPNPQVSGRGLARLRQAGIEVE 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P VR+K+A SLD +T++ + SQWIT +R
Sbjct: 118 VGVLEAEARALNAGFVKRMEHGLPLVRVKLAMSLDGRTAMASGESQWITGAPARAAVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LTG TVL D+ RL VR ++ P R+++D LR+ PF
Sbjct: 178 RARSSVVLTGADTVLVDHARLTVRGEELGLAPEQVALALQRPPLRVLVDGRLRVPLDVPF 237
Query: 226 FRVLKGGGSCIFTATDLPMKRKI-LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
F + G + + T + +R++ GHE++ +P G+VDL A++ EL R NE+
Sbjct: 238 F---QAGPALVATVS---AEREVDYRAAGHELLAVPGEDGRVDLPALLAELAARGANEVL 291
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
+EAG +L A +G VDE L+++P +G P + + +LK +I+ +G
Sbjct: 292 VEAGPRLAGAFARQGLVDEYRLFVAPKFLGSTARPLLELPLERMAEARELKIRDIRAVGE 351
Query: 345 DIRILA 350
D +I+A
Sbjct: 352 DWQIVA 357
>gi|432439727|ref|ZP_19682090.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE189]
gi|432444851|ref|ZP_19687160.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE191]
gi|433012588|ref|ZP_20200971.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE104]
gi|433022161|ref|ZP_20210187.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE106]
gi|433197001|ref|ZP_20380930.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE94]
gi|433324522|ref|ZP_20401809.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli J96]
gi|430969537|gb|ELC86641.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE189]
gi|430976226|gb|ELC93101.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE191]
gi|431535923|gb|ELI12258.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE104]
gi|431541046|gb|ELI16496.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE106]
gi|431725770|gb|ELJ89609.1| riboflavin biosynthesis protein RibD [Escherichia coli KTE94]
gi|432347036|gb|ELL41500.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Escherichia coli J96]
Length = 367
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 217/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALVAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-DDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGNDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>gi|392940042|ref|ZP_10305686.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
siderophilus SR4]
gi|392291792|gb|EIW00236.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
siderophilus SR4]
Length = 360
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/304 (45%), Positives = 199/304 (65%), Gaps = 7/304 (2%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
++PNP VG VIVK +II GY + GG HAE++AL NA DV ST+++TLEPCS+
Sbjct: 19 TNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVE---DVKGSTMFVTLEPCSH 75
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
+G TPPC E +IKSGIK+V IA+ DPNP VSG G+ +L AGI V+ G+M+KEA ++N
Sbjct: 76 YGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVQVGMMEKEARKLNEI 135
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F + IP+V +K A S+D K + YN +S+WIT+++SR +H R R AI+ G+ TV
Sbjct: 136 FVKYITTKIPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNTV 195
Query: 194 LKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMK---RKILE 250
+KDNP L R ++ P RI++DS R V++ + AT M RK LE
Sbjct: 196 IKDNPMLTTR-LEGYKSPVRIIVDSRGRTPLASNVIRDKAAKTIIATTELMPNSVRKKLE 254
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
D+ EVI+L N+ GKV L+ ++I+LG+R I+ + IE G LN + + EG VD+++ +ISP
Sbjct: 255 DMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSALKEGIVDKVMFFISP 314
Query: 311 ILIG 314
++G
Sbjct: 315 RIVG 318
>gi|334123200|ref|ZP_08497229.1| riboflavin biosynthesis protein RibD [Enterobacter hormaechei ATCC
49162]
gi|333391074|gb|EGK62197.1| riboflavin biosynthesis protein RibD [Enterobacter hormaechei ATCC
49162]
Length = 367
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/353 (40%), Positives = 207/353 (58%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L GI V GLM ++A IN
Sbjct: 76 SHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQEGIDVSHGLMMQDAEAIN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ N SQWITS ++R D RA+S AILT
Sbjct: 136 KGFLKRMRTGFPFIQLKLGASLDGRTAMANGESQWITSPQARRDVQRLRAQSHAILTSSE 195
Query: 192 TVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + + QP RI+IDS R+ P R+++ G
Sbjct: 196 TVLADDPAMTVRWDELNADTQALYPQENLRQPLRIIIDSQNRVMPEHRIVQQPGETWIAR 255
Query: 240 T-----DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
T D P G I++P + G +DL +++ LGK+++N + +EAG L A
Sbjct: 256 TKEDTRDWPQ--------GVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVEAGPTLAGA 307
Query: 295 LILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
L+ G VDELL+Y++P L+G +A +F LP L +L F EI+ +GPD+
Sbjct: 308 LLQAGLVDELLVYVAPKLLGYDARGLFVLPGLEKLADAPQLTFSEIRPVGPDV 360
>gi|77461240|ref|YP_350747.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
fluorescens Pf0-1]
gi|77385243|gb|ABA76756.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
fluorescens Pf0-1]
Length = 376
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 211/367 (57%), Gaps = 29/367 (7%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV++ +I+ G+ + G HAE+ AL A G
Sbjct: 14 MARALELARKGHYTTHPNPRVGCVIVRDGQIVGEGWHERAGEPHAEVHALR---AAGERA 70
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +GI +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 71 RGATAYVTLEPCSHHGRTPPCADALVNAGIGRVVAAMRDPNPQVAGRGLQRLTDAGIATE 130
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 131 SGVLEAEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 190
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 191 RAQASVVLTGADTVLADGARLTVRGEELGLDAAQTALALSRPPLRVLIDGRLRVPLDAPF 250
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGH--EVIVLPNNLGKVDLQAVIIELGKRKINEL 283
F K G + + T I E H E +++P + G+VDL ++IEL R +NE+
Sbjct: 251 F---KAGPALVATCV------AIEEQYAHGPECLIVPGDDGQVDLHQLLIELANRGVNEV 301
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG +L A G VDE +++I+ +G P + +LK EI+ +G
Sbjct: 302 LVEAGPRLAGAFAQFGLVDEFVIFIAGKFLGSTARPLLDWPLACMKDAPELKITEIRAVG 361
Query: 344 PDIRILA 350
D R+ A
Sbjct: 362 DDWRVTA 368
>gi|119774153|ref|YP_926893.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Shewanella amazonensis SB2B]
gi|119766653|gb|ABL99223.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella amazonensis SB2B]
Length = 378
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 210/351 (59%), Gaps = 20/351 (5%)
Query: 13 NSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIV + I+ G+ GG HAE+ AL AA + +T Y+TLEPC
Sbjct: 28 TTRPNPNVGCVIVNDAGDIVGEGWHIRAGGPHAEVHALKAAADK---ARGATAYVTLEPC 84
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC +ALI +G+K+V++A+ DPNP V+G+G+ L AGI V GLM+ EA +N
Sbjct: 85 SHYGRTPPCAKALIDNGLKRVVVAMTDPNPQVAGRGIKLLQDAGIEVAHGLMEAEARALN 144
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF SRM+R P+V +K+ +SLD KT+L + S+WIT E+R D RA+SCA++TGI
Sbjct: 145 PGFLSRMERKRPFVTVKVGASLDGKTALSSGESKWITGPEARRDVQRLRAKSCALITGID 204
Query: 192 TVLKDNPRLNVR-----SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT 240
TVL D+P LNVR S+ S QP R+V+DS R+ ++ G + +
Sbjct: 205 TVLLDDPSLNVRHGELGSLGASLTEPELIQPIRVVLDSQRRMSTDAKLFGITGPILLVSA 264
Query: 241 DLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
+ P K L L V ++LP + G++DL A++ LG+ N + +EAG L A I
Sbjct: 265 E-PYDEKFLHSLPDFVTCLILPGSHGRIDLAALLSHLGE-NCNRVLVEAGGTLAGAFIAA 322
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G DEL+LY +P L+G +M LP + ++ + LK + +K+G D R
Sbjct: 323 GLCDELVLYQAPKLLGSHGRDMLQLPDYQTMAEVPGLKLIDERKVGQDWRF 373
>gi|398983667|ref|ZP_10690131.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM24]
gi|399012350|ref|ZP_10714674.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM16]
gi|398115912|gb|EJM05685.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM16]
gi|398156839|gb|EJM45251.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM24]
Length = 377
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 214/368 (58%), Gaps = 31/368 (8%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCV+V++ +I+ G+ + G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVVVRDGQIVGEGWHERAGEPHAEVHALR---AAGELA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVGRVVAAMRDPNPQVAGRGLQRLTDAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEAEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL D RL VR S+ S P R++ID LR+ PF
Sbjct: 192 RAQAAVVLTGADTVLADGARLTVRADELGLDAEQTSLAMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGH--EVIVLPNNLGKVDLQAVIIELGKRKINEL 283
F K G + + T I E H E +++P + G+VDL ++IEL R +NE+
Sbjct: 252 F---KAGPALVATCV------AIEEQYAHGPECLIVPGDDGQVDLHQLLIELANRGVNEV 302
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKI 342
+EAG +L A G VDE +++I+ +G A + P Y D +LK EI+ +
Sbjct: 303 LVEAGPRLAGAFAQLGLVDEFVIFIAGKFLGSSARPLLDWPLAYMKDAP-ELKITEIRAV 361
Query: 343 GPDIRILA 350
G D R+ A
Sbjct: 362 GDDWRVTA 369
>gi|317492964|ref|ZP_07951388.1| riboflavin biosynthesis protein RibD [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316919086|gb|EFV40421.1| riboflavin biosynthesis protein RibD [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 373
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 204/356 (57%), Gaps = 25/356 (7%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++PNP VGCVIV I+ GY G HAE+ AL A G +T Y+TLEPC
Sbjct: 24 FTTTPNPNVGCVIVLNDEIVGEGYHLRAGEPHAEVHALHMA---GDKARGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA +N
Sbjct: 81 SHHGRTPPCADALVAAGVSRVVAAMQDPNPNVAGRGLFKLQQAGIDVSHGLMMNEAEAVN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P+V++K+A+SLD +T++ + SQWITS SR D +RA+S AIL+
Sbjct: 141 RGFLKRMRTGFPFVQLKMAASLDGRTAMASGESQWITSAASRQDVQRYRAQSSAILSSSA 200
Query: 192 TVLKDNPRLNVR----SIKTSH--------QPYRIVIDSYLRIDPFFRVLKGGGSCIFT- 238
TVL D+P L VR + T QP R++IDS RI +++ G +
Sbjct: 201 TVLADDPSLTVRWDELDVTTQQAYPRENLRQPLRVIIDSQNRITTEHKLISQAGETLLAR 260
Query: 239 --ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
DL + + + +P +DL ++++LGK +IN + +EAG L AL+
Sbjct: 261 IHPDDLHWPENVKQ------LAIPQYGQGIDLVVLMMQLGKLQINSVWVEAGASLAGALL 314
Query: 297 LEGCVDELLLYISPILIGEAY-NMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G VDEL++Y++P L+G+A + LP L + F E+ +GPD+RI+ R
Sbjct: 315 QAGLVDELIIYLAPKLLGDAARGLCVLPGLEQLADAPQFVFSEVMPVGPDLRIVLR 370
>gi|387770216|ref|ZP_10126399.1| riboflavin biosynthesis protein RibD [Pasteurella bettyae CCUG
2042]
gi|386904578|gb|EIJ69367.1| riboflavin biosynthesis protein RibD [Pasteurella bettyae CCUG
2042]
Length = 373
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 218/366 (59%), Gaps = 25/366 (6%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LA++ AK ++PNP VGCV+VK I+ G+ G HAE+ A+ A G
Sbjct: 12 MQLAMELAAKGQFTTTPNPAVGCVLVKNGNIVGKGFHFKAGEPHAEVMAMREA---GEKA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + LI++GI KVI+A+ DPNP VSGKG+ L+ AGI
Sbjct: 69 KGATAYVTLEPCSHFGRTPPCAKGLIEAGIAKVIVAMQDPNPSVSGKGLKMLMDAGIETS 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+Q++A +N GF RM+ G+P++++K+A S+D +T+ S+WIT +++R D +
Sbjct: 129 VGLLQEQAEALNKGFLKRMRTGMPYLQLKMAMSIDGRTATAEGESKWITGEQARADVQLQ 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVLKDNP LNVR +++ + QP R++IDS R+ P
Sbjct: 189 RAKASAILSASNTVLKDNPNLNVRWEQFPSELQSQYKKEQLRQPIRVIIDSKHRVLPGLN 248
Query: 228 VLKGGGSCIFTAT---DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
+ K T D+ M + L E+ P+ + LQA+I+ LGK++IN +
Sbjct: 249 LFKINSPIWLVGTSTRDISMYPEYCHSL--ELQPEPH---QTMLQALIMALGKQQINSIW 303
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG +L +LI E VDEL++Y++P L+G +A + P L K I+K+G
Sbjct: 304 VEAGAELAGSLIAENLVDELIIYMAPKLLGDQARGLCHFPALTKLADAPLWKLQSIEKLG 363
Query: 344 PDIRIL 349
D++++
Sbjct: 364 DDVKMI 369
>gi|304395476|ref|ZP_07377359.1| riboflavin biosynthesis protein RibD [Pantoea sp. aB]
gi|304356770|gb|EFM21134.1| riboflavin biosynthesis protein RibD [Pantoea sp. aB]
Length = 366
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/362 (37%), Positives = 212/362 (58%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV++ + G+ + G HAE+ AL A G
Sbjct: 6 MARALELARRGRFTTMPNPNVGCVIVRDGEVAGEGWHQRAGEPHAEVHALRMA---GEKA 62
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L +GI+V
Sbjct: 63 RGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLHRLHQSGIAVS 122
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G PW+++K+ +SLD +T++ + SQWITS +R D
Sbjct: 123 HGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQRL 182
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP R+++DS R+ P R
Sbjct: 183 RAQSAAILSSSATVLADDPSLTVRWSELDPESQSLLDEQQLRQPVRVIVDSQNRVTPQHR 242
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G + P ++ ++ I +P ++DL A+++ LG+++IN + +EA
Sbjct: 243 LISQPGE-TWLMRHQPDQQHWPAEVTQ--IAVPLREQQLDLVAMMMLLGQKQINSVWVEA 299
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G E + LP SL +F +++++G D+
Sbjct: 300 GASLAGALLQAGLVDELIVYLAPKLLGHEGRGLCQLPGLRSLADAPAFRFSDVRQVGDDL 359
Query: 347 RI 348
R+
Sbjct: 360 RL 361
>gi|440759481|ref|ZP_20938618.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea
agglomerans 299R]
gi|436426799|gb|ELP24499.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pantoea
agglomerans 299R]
Length = 366
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 135/362 (37%), Positives = 212/362 (58%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV++ + G+ + G HAE+ AL A G
Sbjct: 6 MARALELARRGRFTTMPNPNVGCVIVRDGEVAGEGWHQRAGEPHAEVHALRMA---GEKA 62
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L +GI+V
Sbjct: 63 RGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLHRLHQSGIAVS 122
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G PW+++K+ +SLD +T++ + SQWITS +R D
Sbjct: 123 HGLMMPEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQRL 182
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP R+++DS R+ P R
Sbjct: 183 RAQSAAILSSSATVLADDPSLTVRWSELDPESQSLLDEQQLRQPVRVIVDSQNRVTPQHR 242
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G + P ++ ++ I +P ++DL A+++ LG+++IN + +EA
Sbjct: 243 LISQPGE-TWLMRHQPDQQHWPAEVTQ--IAVPLREQQLDLVAMMMLLGQKQINSVWVEA 299
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G E + LP SL +F +++++G D+
Sbjct: 300 GASLAGALLQAGLVDELIVYLAPKLLGHEGRGLCQLPGLSSLADAPAFRFSDVRQVGDDL 359
Query: 347 RI 348
R+
Sbjct: 360 RL 361
>gi|146281221|ref|YP_001171374.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri A1501]
gi|145569426|gb|ABP78532.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri A1501]
Length = 359
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 210/366 (57%), Gaps = 25/366 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + S+ PNPRVGCVIV + ++ G+ G HAE+ AL A G
Sbjct: 1 MARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQA---GERA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EAL+K+G+ +V+ A+ DPNP V+G G+ +L SAGI V
Sbjct: 58 RGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGIEVA 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R +
Sbjct: 118 SGVLEGEARELNAGFIKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RARS +LTG TVL D RL VR ++ P R+++D LR+ PF
Sbjct: 178 RARSSVVLTGADTVLMDAARLTVRGAELGLDAETTALALQRPPLRVLVDGRLRVPLDAPF 237
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + T + + GHE +VL +VDL +++ EL R NE+ +
Sbjct: 238 F---QAGPALVVTV--VAGCEETYRRAGHEALVLGQE--RVDLTSLLRELAARGANEVLV 290
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L +A G +DE L+++ +G + P + + +LK +I+ +G D
Sbjct: 291 EAGPRLVSAFASLGLIDEYQLFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDD 350
Query: 346 IRILAR 351
+ILAR
Sbjct: 351 WKILAR 356
>gi|114046668|ref|YP_737218.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shewanella sp. MR-7]
gi|113888110|gb|ABI42161.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Shewanella sp. MR-7]
Length = 381
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 148/367 (40%), Positives = 208/367 (56%), Gaps = 20/367 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ +I+ GY + G HAE+ AL A G
Sbjct: 11 MSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA---GELA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V G+G+ L AGI V
Sbjct: 68 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIQVD 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+PWV +K+A+SLD KT+L N S+WIT E+R D
Sbjct: 128 VGLHRDEAYALNLGFMKRMESGLPWVTVKLAASLDGKTALSNGVSKWITGPEARRDVQRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH-----------QPYRIVIDSYLRIDPFFRV 228
R R+CA++TGI TVL D+P LNVR + QP R+++DS R+ P
Sbjct: 188 RIRACALVTGIDTVLADDPSLNVRYSELGSLNSLLSEAQILQPLRVILDSRCRM-PIKAA 246
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
L S I + P + L V + LP G++ L ++ LGK N++ IE
Sbjct: 247 LLAIESPILLVSTEPYSPAFMAQLPSHVTCLQLPAIDGRISLPTLLSYLGK-SCNQVLIE 305
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A I G DEL+LY + ++G + N+ LP + + LK + +K+G D
Sbjct: 306 AGATLAGAFIGAGLADELVLYQAMKVLGAQGRNLLELPDYQMMADIPTLKLVDERKVGAD 365
Query: 346 IRILARF 352
R R
Sbjct: 366 TRFTLRL 372
>gi|400406356|ref|YP_006589104.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [secondary
endosymbiont of Heteropsylla cubana]
gi|400364609|gb|AFP85676.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [secondary
endosymbiont of Heteropsylla cubana]
Length = 375
Score = 255 bits (651), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 146/358 (40%), Positives = 204/358 (56%), Gaps = 31/358 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVIV+ I+ GY + G HAE+ AL A D +T Y+TLEPC
Sbjct: 20 FTTSPNPNVGCVIVRNGYIVGEGYHQCAGTEHAEVHALRQAKD---DSRGATAYVTLEPC 76
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
++ G TP CT ALI +G+K+VI I DPNP V+G G +L AG+ V+ GLMQ EA +N
Sbjct: 77 NHQGRTPSCTHALINAGVKEVISTIPDPNPQVAGSGFRRLQEAGVKVRYGLMQSEAEALN 136
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G PW+R+K+A+S+D +T++ + +SQWITS ESR D WRA S AIL+
Sbjct: 137 PGFLKRMRTGFPWIRLKLAASIDGRTAMESGASQWITSLESRQDVQCWRAESDAILSTAA 196
Query: 192 TVLKDNPRLNVRSI------------KTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DNP L VR K QP R++ID+ R+ PF RV+K G
Sbjct: 197 TVLADNPALTVRWASLPKSVKFLYPEKRLRQPLRVIIDTANRVKPFCRVIKEEGLTW--- 253
Query: 240 TDLPMKRKILEDLGH----EVIVLPNNLG----KVDLQAVIIELGKRKINELHIEAGYQL 291
+ R + +DL + ++ P G +DL +++ LG +IN L +EAG L
Sbjct: 254 ----LARIVPDDLTWSSSVKQLLFPTFHGTHIQSLDLISLMTYLGHYQINSLWVEAGPSL 309
Query: 292 NTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
AL+ +DEL+LY +P L+G A +F L L + +++++GPDIR
Sbjct: 310 AGALLSLELIDELILYQAPKLLGSNARPLFFLSKPIDLSEAPAFTILDMKQLGPDIRF 367
>gi|398879882|ref|ZP_10634963.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM67]
gi|398195200|gb|EJM82251.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM67]
Length = 377
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 217/365 (59%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIVK+ +I+ G+ + G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVIVKDGQIVGEGWHERTGEPHAEVHALR---AAGEKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+++
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGLARVVAAMQDPNPSVAGRGMQRLAQAGIAIE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA++ +LTG TVL DN RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTALAMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++ + G VDL+ +++EL R +NE+ +
Sbjct: 252 F---KAGPALV--ATCMAIEEQYAN--GPECLIVAGDDGLVDLRKLLVELANRGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A +G VDE ++I+ +G + P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQQGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|410667743|ref|YP_006920114.1| riboflavin biosynthesis protein RibD [Thermacetogenium phaeum DSM
12270]
gi|409105490|gb|AFV11615.1| riboflavin biosynthesis protein RibD [Thermacetogenium phaeum DSM
12270]
Length = 382
Score = 255 bits (651), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 141/356 (39%), Positives = 214/356 (60%), Gaps = 11/356 (3%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A L +SPNP VG V+V++ II GY G HAE+ AL A G
Sbjct: 13 MSRALELAALGKGKTSPNPMVGAVVVRDDVIIGEGYHMKAGTPHAEVHAL---RAAGDLA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST+Y+TLEPC ++G TPPCTEA+IK+GI+KV+IA DPNPLV+GKG+ L AGI V+
Sbjct: 70 KGSTLYVTLEPCCHYGKTPPCTEAIIKAGIQKVVIATCDPNPLVAGKGIRSLKEAGIEVQ 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M++EA +N FF ++ G+P+V +K+A SLD K + + S+WIT +++R
Sbjct: 130 VGIMEEEAQRLNEAFFKYIRTGLPYVVLKVAMSLDGKIATCSGDSKWITGEKARLKVQHL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA S A++ GIGTVL D+P L VR S +P R+++DS L + R+++ G
Sbjct: 190 RAESDAVMVGIGTVLADDPLLTVRLPDESKRPLRVIVDSSLHLPVDSRLVQTAGEAPVVV 249
Query: 240 TDLPM-----KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
+P K+ +LE G EV+ +P V ++ ++ ELG+R + L +E G LN +
Sbjct: 250 AAVPGKYQKDKKLLLEKRGVEVLDMPGEDDMVSIEELLQELGRRGVMTLLLEGGATLNAS 309
Query: 295 LILEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+ VD+ + ++SP++IG A F +LDK ++L+ +I+++G D I
Sbjct: 310 ALQADIVDKFVFFLSPLIIGGKNAPGAFGGSGFDTLDKALRLESLKIERVGEDFLI 365
>gi|418025467|ref|ZP_12664445.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS625]
gi|353535079|gb|EHC04643.1| riboflavin biosynthesis protein RibD [Shewanella baltica OS625]
Length = 384
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/364 (40%), Positives = 211/364 (57%), Gaps = 20/364 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ +I+ GY + G HAE+ AL A G
Sbjct: 15 MSRAIQLARKGFYTTRPNPSVGCVIVKDNQIVGEGYHQKAGEPHAEVHALRMA---GEHA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V+G+G+ L AGI V
Sbjct: 72 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVAGRGIQMLRDAGIEVD 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+P V +K+A+SLD KT+L N S+WIT ESR D
Sbjct: 132 VGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRDVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH-----------QPYRIVIDSYLRIDPFFRV 228
R RSCA++TGI T+L D+P LNVR + QP R+++DS R+ P
Sbjct: 192 RLRSCALVTGIETILADDPSLNVRYQELGDIKDCVTEAQLLQPLRVILDSRARL-PLSAA 250
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
S I + + + L V +VLP G+V L ++ LG+ N + +E
Sbjct: 251 CLAIVSPILLVSTVAYPAEFQAQLPSHVSCLVLPAIAGRVSLPELLSYLGQ-SCNHVLVE 309
Query: 287 AGYQLNTALILEGCVDELLLYIS-PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A + +G DEL+LY + IL G+ N+ LP + ++ + L + +K+GPD
Sbjct: 310 AGATLAGAFLAQGLADELVLYQAMKILGGQGRNLLQLPDYQTMAQIPALTLVDERKLGPD 369
Query: 346 IRIL 349
R++
Sbjct: 370 TRLI 373
>gi|399522403|ref|ZP_10763067.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas pseudoalcaligenes CECT 5344]
gi|399109837|emb|CCH39628.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas pseudoalcaligenes CECT 5344]
Length = 371
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 137/363 (37%), Positives = 214/363 (58%), Gaps = 18/363 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ I+ G+ G HAE+ AL A G
Sbjct: 9 MARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQA---GDKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G G+ +L AGI V
Sbjct: 66 RGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGSGLLRLAQAGIEVA 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K A SLD +T++ + SQWIT +R +
Sbjct: 126 SGVLESEARALNAGFIKRMESGLPFVRVKSAMSLDGRTAMASGESQWITGPAARAEVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS-----------IKTSHQPYRIVIDSYLRIDPFFRV 228
RA+S +L+G TVL D+ RL VR + S P R+++D LR+
Sbjct: 186 RAQSSVVLSGADTVLADDARLTVRPDELGLGGEGTFMAASRPPLRVLVDGRLRVPLSKAF 245
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
+ G + + T + + L D GHE++ +P + G VDL+ +++EL R +NE+ +EAG
Sbjct: 246 FQAGPALVATCAAAAARDRYLAD-GHELLAVPGSNGHVDLRKLLLELAGRGVNEVLVEAG 304
Query: 289 YQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
+L A G VDE ++++P L+G A +F LP + + + +L+ +I+ +G D +
Sbjct: 305 PRLAGAFARSGLVDEYRIFVAPKLLGSSARPLFELPLNR-MAEAPELQILDIRAVGDDWQ 363
Query: 348 ILA 350
I A
Sbjct: 364 ITA 366
>gi|398852092|ref|ZP_10608761.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM80]
gi|398244968|gb|EJN30500.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM80]
Length = 377
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/367 (37%), Positives = 209/367 (56%), Gaps = 29/367 (7%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCV+V++ +I+ G+ + G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVVVRDGQIVGEGWHERAGEPHAEVHALR---AAGELA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMRDPNPQVAGRGLQRLADAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ N SQWIT +R+
Sbjct: 132 SGVLEAEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMENGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA++ +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAQAAVVLTGADTVLADGARLTVRADELGLDSEQTALAMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGH--EVIVLPNNLGKVDLQAVIIELGKRKINEL 283
F K G + + T I E H E +++P + G+VDL ++IEL R NE+
Sbjct: 252 F---KAGPALVATCV------AIEEQYAHGPECLIVPGDDGQVDLHQLLIELANRGTNEV 302
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG L A G VDE +++I+ +G P + +LK EI+ +G
Sbjct: 303 LVEAGPSLAGAFAQLGLVDEFVIFIAGKFLGSTARPLLDWPLAHMKDAPELKITEIRAVG 362
Query: 344 PDIRILA 350
D R+ A
Sbjct: 363 DDWRVTA 369
>gi|421503874|ref|ZP_15950819.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas mendocina DLHK]
gi|400345378|gb|EJO93743.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas mendocina DLHK]
Length = 371
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 219/366 (59%), Gaps = 24/366 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ I+ G+ G HAE+ AL A G
Sbjct: 9 MARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQA---GERA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L +AGI V
Sbjct: 66 RGATAYVTLEPCSHHGRTPPCADALVAAGVGRVVAAMQDPNPQVAGRGLLRLANAGIEVL 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N+GF RM+ G+P+VR+K A SLD +T++ + SQWIT +R +
Sbjct: 126 SGVLEAEARALNVGFIKRMESGLPFVRVKSAMSLDGRTAMASGESQWITGPAARAEVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS-----------IKTSHQPYRIVIDSYLRI---DPF 225
RA+S +L+G TVL D+ RL VR + S P R+++D LR+ F
Sbjct: 186 RAQSSVVLSGADTVLADDARLTVRPDELGLGVEATFMAASRPPLRVLVDGRLRVPLSKAF 245
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+V G + + T + + L D GHE++ +P + G VDL+ ++ EL R +NE+ +
Sbjct: 246 FQV---GPALVATCAAAAARDRYLAD-GHELLAVPGSNGHVDLRKLLQELAGRGVNEVLV 301
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG +L A G VDE ++I+P L+G A +F LP + + + +L+ +I+ +G
Sbjct: 302 EAGPRLAGAFARAGLVDEYRIFIAPKLLGSSARPLFELPLN-RMAEAPELQIVDIRAVGA 360
Query: 345 DIRILA 350
D +I A
Sbjct: 361 DWQITA 366
>gi|283784233|ref|YP_003364098.1| riboflavin biosynthesis protein [Citrobacter rodentium ICC168]
gi|282947687|emb|CBG87242.1| riboflavin biosynthesis protein [Citrobacter rodentium ICC168]
Length = 367
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 146/352 (41%), Positives = 206/352 (58%), Gaps = 19/352 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G +T Y+T
Sbjct: 15 ARGRFTTHPNPNVGCVIVKDGEIVGEGYHYRAGEPHAEVHALRMA---GEKAKGATAYVT 71
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA
Sbjct: 72 LEPCSHHGRTPPCCDALIAAGMARVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMSEA 131
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM+ G P+V++K+ +SLD +T++ + SQWITS ++R D RA+S AIL
Sbjct: 132 EALNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAQSHAIL 191
Query: 188 TGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
T TVL D+P+L VR + QP RIVIDS R+ P R++ G
Sbjct: 192 TSSETVLADDPQLTVRWSELGEATQAAYPQENLRQPVRIVIDSRNRVTPEHRIVSQPGET 251
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
F T R E + I +P + G +DL +++ LGK++IN L +EAG L AL
Sbjct: 252 WFARTKED-DRVWPESV--RTIQVPEHNGHLDLVLLLMLLGKQQINSLWVEAGPTLAGAL 308
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G VDEL++Y++P L+G +A + LP L + +F EI+ GPD+
Sbjct: 309 LQAGVVDELIMYVAPKLLGSDARGLCVLPGLEKLADAPQFQFKEIRYTGPDV 360
>gi|424925146|ref|ZP_18348507.1| RibD [Pseudomonas fluorescens R124]
gi|404306306|gb|EJZ60268.1| RibD [Pseudomonas fluorescens R124]
Length = 377
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 217/366 (59%), Gaps = 27/366 (7%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A K + PNPRVGCVIV++ +I+ G+ + G HAE+ AL A G
Sbjct: 15 MARALQLARKGHYTTHPNPRVGCVIVRDGQIVGEGFHERAGEPHAEVHALR---AAGERA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVTAGVARVVAAMRDPNPQVAGRGLQRLTDAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEAEARQLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMDSGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK-----------TSHQPYRIVIDSYLRI---DPF 225
RA++ +LTG TVL D RL VR+ + S P R+++D LR+ PF
Sbjct: 192 RAQAAVVLTGADTVLADGARLTVRADELGLDAEQTARAMSRPPLRVLVDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++P + G+VDL ++IEL R +NE+ +
Sbjct: 252 F---KAGPALV--ATCMAVEEQYAN--GPECLIVPGDDGQVDLHQLLIELVNRGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG +L A G VDE +++I+ +G A + P Y D +LK EI+ +G
Sbjct: 305 EAGPRLAGAFAQLGLVDEFVIFIAGKFLGSTARPLLDWPLAYMKDAP-ELKITEIRAVGD 363
Query: 345 DIRILA 350
D R+ A
Sbjct: 364 DWRVTA 369
>gi|410091034|ref|ZP_11287611.1| riboflavin biosynthesis protein RibD [Pseudomonas viridiflava
UASWS0038]
gi|409761602|gb|EKN46661.1| riboflavin biosynthesis protein RibD [Pseudomonas viridiflava
UASWS0038]
Length = 368
Score = 254 bits (650), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 141/355 (39%), Positives = 211/355 (59%), Gaps = 10/355 (2%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+ +S+ PNPRVGCVI ++ G+ +S GG HAE+ AL A G
Sbjct: 12 MQHALTLAERGSHSTWPNPRVGCVIAHGMHVVGEGWHRSAGGPHAEVFALRQA---GASA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T C +ALI+SGI V++A DP V+G+G+A L AGI VK
Sbjct: 69 RGATAYVTLEPCSHVGRTGACYQALIESGIASVVVAHEDPFEQVNGRGIALLREAGIEVK 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ A E+N GF S ++R PWV++K+ SLD +T+L N SQWI+S ++R D W
Sbjct: 129 VGLLRTAARELNRGFLSSVERQRPWVQLKLGMSLDGRTALKNGRSQWISSPQARADVQFW 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RARS AILTG GTVL D+P L VR + + QP R+V+DS R+ RV +
Sbjct: 189 RARSAAILTGSGTVLADDPLLTVRQLSSPEALQPVRVVLDSQARVPGSARVFNSLAPSLH 248
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+ + +D +++ L + +DL+A++ L KR ++++ +EAG L L+
Sbjct: 249 V---IGRDAEPQQDHRPDLLRLDTDTQGLDLKALMHALSKRGLHDVMVEAGPTLAGTLLS 305
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDELLLY++P L+G+ A + + +L+ + +++ K+GPD+R+ R
Sbjct: 306 AHLVDELLLYMAPRLLGDLARPLVHMAELTNLEDSLDFDVYDVTKMGPDLRLRLR 360
>gi|157369315|ref|YP_001477304.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Serratia proteamaculans 568]
gi|157321079|gb|ABV40176.1| riboflavin biosynthesis protein RibD [Serratia proteamaculans 568]
Length = 369
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 147/362 (40%), Positives = 221/362 (61%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AG+ V+
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGLDVR 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P+V++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 125 HGLMLAEAESVNLGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SI---KTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR SI + QP RI++DS R+ P R
Sbjct: 185 RAQSAAILSTSATVLADDPSLTVRWDELDAETQSIYPRENLRQPLRIILDSQNRVTPQHR 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G + A P ++ +D+ E + P + G VDL ++++L KR++N + +EA
Sbjct: 245 VVQQPGQT-WLARLQPDEQIWPQDV--EQLTFPAHGGGVDLVVMMMQLAKRQVNSIWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G QL AL+ G VDEL+LYI+P L+G+ + LP L + F E+++IGPD+
Sbjct: 302 GAQLAGALLQAGLVDELILYIAPKLLGDNGRGLCHLPGLEHLTDAPEFVFSEVRQIGPDL 361
Query: 347 RI 348
R+
Sbjct: 362 RL 363
>gi|358448489|ref|ZP_09158992.1| riboflavin biosynthesis protein RibD [Marinobacter manganoxydans
MnI7-9]
gi|357227277|gb|EHJ05739.1| riboflavin biosynthesis protein RibD [Marinobacter manganoxydans
MnI7-9]
Length = 371
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 202/362 (55%), Gaps = 17/362 (4%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q A + ++ PNPRVGCVI + ++ G+ + G HAE AL A G D
Sbjct: 10 MARAVQLAWRGRYSTHPNPRVGCVIARGDLVLGEGWHERAGEAHAETRALSQA---GPDA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC ALI +G+ V A DPNP VSG+G+ L AGI V
Sbjct: 67 RGATAYVTLEPCSHFGRTPPCARALIDAGVAHVYAATKDPNPSVSGRGLDMLREAGIRVT 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GL+ +EA +N GF RM G PWVR+K+A+SLD +T++ + SQWIT E+R D
Sbjct: 127 EGLLAEEAARLNPGFMKRMNTGRPWVRLKMAASLDGRTAMASGESQWITGPEARRDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSHQPYRIVIDSYLRIDPFFRVLK 230
RA S AILTG+GTVL D+P L VR + + S QP R++ D R +L+
Sbjct: 187 RAISDAILTGVGTVLADDPSLTVRREELGDIGDATEPSRQPLRVIADRDARTPSTANILQ 246
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGK---VDLQAVIIELGKRKINELHIEA 287
GG +F A+ + +DL I L K +DL ++ LG+ INEL +EA
Sbjct: 247 GGNVQVFCASST-LATAPAQDLAALGISLTGVAWKDNGIDLAELLDSLGELGINELLVEA 305
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
G L I E VDEL LY +P+ +G P ++ K++ + +++G D R
Sbjct: 306 GPTLAGTFISENLVDELWLYQAPVFLGSTGRPTAHLPLETMADKVQWNVLDRRQVGEDQR 365
Query: 348 IL 349
++
Sbjct: 366 LI 367
>gi|406597424|ref|YP_006748554.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii ATCC
27126]
gi|406374745|gb|AFS38000.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii ATCC
27126]
Length = 379
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 150/364 (41%), Positives = 213/364 (58%), Gaps = 18/364 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAA-AQGY 57
M A+Q A+ +SPNPRVGCVIV E +++ GY G HAE+ AL +A+ A+
Sbjct: 13 MAKAIQLAQQGRFTTSPNPRVGCVIVDENNQLLGQGYHIQAGTPHAEVHALRHASNARPQ 72
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+T Y+TLEPCS+FG TPPC AL+++ + +V+IA+ DPNP V G G++ L AGI
Sbjct: 73 GAKGATAYVTLEPCSHFGRTPPCAVALVEAKVARVVIAMTDPNPNVCGNGISILQEAGIE 132
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V +M EA +N GF RM G P+VR+K+ SLD K +L N SQWIT E+R D
Sbjct: 133 VVSEVMAAEAAALNPGFIKRMLTGEPFVRVKLGISLDGKIALQNGVSQWITGAEARRDVQ 192
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPFFRV 228
+RA+SC +LTG GTV DNP L VR + QP R+V+DS ++ +
Sbjct: 193 QYRAQSCVVLTGSGTVKADNPSLLVREQEAQFTNYPLEHIRQPARVVVDSKSKLTRDY-T 251
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
L G+ FTAT + + + L GK+DL A++ LG ++ NE+ +EAG
Sbjct: 252 LFNDGNITFTAT----SQAHPDTATQHYLQLDEKDGKLDLHALMSALGDKQYNEVWVEAG 307
Query: 289 YQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
L AL+ EG VDEL+ Y +P L+G+ +M LP SL++ I L E +++G DI+
Sbjct: 308 PGLAGALLQEGLVDELICYQAPKLLGDKGVSMVNLPAFTSLNECISLSLIENRQVGNDIK 367
Query: 348 ILAR 351
++ R
Sbjct: 368 LIFR 371
>gi|401678844|ref|ZP_10810798.1| riboflavin biosynthesis protein RibD [Enterobacter sp. SST3]
gi|400213940|gb|EJO44872.1| riboflavin biosynthesis protein RibD [Enterobacter sp. SST3]
Length = 367
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 142/353 (40%), Positives = 207/353 (58%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L GI V GLM ++A +N
Sbjct: 76 SHHGRTPPCCDALIAAGVSRVVASMQDPNPQVAGRGLYRLQQEGIDVSHGLMMQDAEALN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ N SQWITS ++R D RA+S AILT
Sbjct: 136 KGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQRLRAQSHAILTSSE 195
Query: 192 TVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + + QP RIVIDS R+ P R+++ G
Sbjct: 196 TVLADDPAMTVRWDELNADTQALYPQENLRQPLRIVIDSQNRVTPEHRIVQQPGETWIAR 255
Query: 240 TDLPMKRKILEDL-----GHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
T ED G I +P + G +DL +++ LGK+++N + +EAG L A
Sbjct: 256 TK--------EDTRAWPEGVRSITVPEHNGHLDLVVLMMLLGKQQVNSIWVEAGPTLAGA 307
Query: 295 LILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
L+ G VDELL+Y++P L+G +A +F LP L +LKF EI+ +GPD+
Sbjct: 308 LLQAGLVDELLVYVAPKLLGSDARGLFVLPGLEKLADAPQLKFSEIRPVGPDV 360
>gi|268592074|ref|ZP_06126295.1| riboflavin biosynthesis protein RibD [Providencia rettgeri DSM
1131]
gi|291312469|gb|EFE52922.1| riboflavin biosynthesis protein RibD [Providencia rettgeri DSM
1131]
Length = 371
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 137/357 (38%), Positives = 212/357 (59%), Gaps = 20/357 (5%)
Query: 9 KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITL 68
K +SPNP VGCVIV++ I+ GY + G HAE+ AL A G +T Y+TL
Sbjct: 18 KGRFTTSPNPNVGCVIVRDGTIVGEGYHQKAGEPHAEVHALRMA---GDKAQGATAYVTL 74
Query: 69 EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAY 128
EPCS+ G TPPC EALIK+G+ +V+ A+ DPNP V+G+G+ L AGI + ++ +A
Sbjct: 75 EPCSHHGRTPPCAEALIKAGVSRVVAAMQDPNPQVAGRGLYMLSQAGIETRSNVLLNDAE 134
Query: 129 EINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILT 188
N GF RM+ G P++++K+A+SLD KT+L + S+WITS +R D RA + AIL+
Sbjct: 135 AANRGFLKRMRTGFPYIQLKLAASLDGKTALESGESKWITSSAARKDVQALRAEASAILS 194
Query: 189 GIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCI 236
TV+ D+P L VR I+ + QP RIV+D++ R+ +V + G C
Sbjct: 195 TSSTVVADDPSLTVRWNELPSDIQQVYPENQVRQPIRIVLDNHNRVTSGHKVTQLDGECW 254
Query: 237 FTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ P + + + G E + +P + DL ++++L KR +N + +EAG +L +L
Sbjct: 255 LVRSN-PDENAVWQ--GQVEQLAVPADENGTDLVILMMQLAKRNVNSIWVEAGAKLAGSL 311
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+ G VDEL++YI+P L+G A + PP +L K +F E++++GPD+R+ R
Sbjct: 312 LKLGLVDELIVYIAPKLLGNSARGLVDFPPLNALIDAPKFEFTEVKQVGPDLRVRLR 368
>gi|398886460|ref|ZP_10641337.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM60]
gi|398189775|gb|EJM77041.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM60]
Length = 377
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 217/365 (59%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIVK+ +I+ G+ + G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVIVKDGQIVGEGWHERTGEPHAEVHALR---AAGDKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+++
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGLARVVAAMQDPNPSVAGRGMQRLAQAGIAIE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA++ +LTG TVL DN RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTALAMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++ + G VDL+ +++EL R +NE+ +
Sbjct: 252 F---KAGPALV--ATCMAIEEQYAN--GPECLIVAGDDGLVDLRKLLVELANRGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A +G VDE ++I+ +G + P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQQGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|429102617|ref|ZP_19164591.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Cronobacter turicensis 564]
gi|426289266|emb|CCJ90704.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Cronobacter turicensis 564]
Length = 341
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 139/342 (40%), Positives = 205/342 (59%), Gaps = 19/342 (5%)
Query: 20 VGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79
+GCVIVK+ I+ G+ G HAE+ AL A G +T Y+TLEPCS+ G TPP
Sbjct: 1 MGCVIVKDGVIVGEGFHLRAGEPHAEVHALRMA---GDKACGATAYVTLEPCSHHGRTPP 57
Query: 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQ 139
C +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V GLM EA +N GF RM+
Sbjct: 58 CCDALINAGVARVVAAMQDPNPQVAGRGLYRLQQAGIEVSHGLMMSEAEALNKGFLKRMR 117
Query: 140 RGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPR 199
G P++++K+ +SLD +T++ + SQWITS ++R D RA S AILT TVL D+P
Sbjct: 118 TGFPFIQLKLGASLDGRTAMASGESQWITSPQARRDVQRLRAESHAILTTSATVLADDPS 177
Query: 200 LNVR------------SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRK 247
+ VR +T QP RIV+D ++ P +++ G + A P
Sbjct: 178 MTVRWDELGEATQAIYPRETLRQPLRIVLDRQNQVTPAHKIVNQPGE-TWLARACPDDAV 236
Query: 248 ILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLY 307
E G E + P + GK+DL ++++LGKR++N L +EAG QL AL+ G VDEL++Y
Sbjct: 237 WPE--GVEQLPTPVHNGKLDLVLLMMQLGKRQVNSLWVEAGPQLAGALLQAGLVDELIVY 294
Query: 308 ISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
++P L+G EA +F LP L +L+F + ++GPD+R+
Sbjct: 295 MAPKLLGSEARGLFALPGLERLADAPRLEFRDAVQVGPDLRL 336
>gi|253990958|ref|YP_003042314.1| Riboflavin biosynthesis protein [Photorhabdus asymbiotica]
gi|253782408|emb|CAQ85572.1| Riboflavin biosynthesis protein [Photorhabdus asymbiotica]
Length = 362
Score = 254 bits (649), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 151/365 (41%), Positives = 221/365 (60%), Gaps = 20/365 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ +SPNP VGCVIV++ +I+ G+ GG HAE+ AL A G
Sbjct: 1 MARALELARQGCFTTSPNPNVGCVIVRDGQIVGEGFHLRSGGPHAEVHALRMA---GDKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V+
Sbjct: 58 KGSTAYVTLEPCSHHGKTPPCADALIAAGVSRVVTAMQDPNPQVAGRGLYKLQQAGIEVE 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ASSLD +T+L + S+WITS +SR D
Sbjct: 118 HGLMMAEAESLNRGFLKRMRTGFPYIQLKMASSLDGRTALASGESKWITSSQSRYDVQKL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+ AIL+ TVL D+P L VR + QP R+++DS R+ +
Sbjct: 178 RAQCSAILSSSNTVLADDPYLTVRWSELDAETQAVYPEENLRQPVRVIVDSQNRVVQQHQ 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G C T E++ E I+LP + VDL ++++LGKR+IN + +E
Sbjct: 238 VIQQPGHCWLARTKAD-GDNWPENV--EQILLPAHGVGVDLVLLMMQLGKRQINTVWVEC 294
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL+LY++P ++G+ A +FT+P SL K + +IQ+IGPD+
Sbjct: 295 GPLLAGALLTLGLVDELVLYVAPKVLGDTACGLFTIPELKSLVKAPEFDIFDIQQIGPDL 354
Query: 347 RILAR 351
R+ R
Sbjct: 355 RLRLR 359
>gi|351731257|ref|ZP_08948948.1| riboflavin biosynthesis protein RibD [Acidovorax radicis N35]
Length = 268
Score = 254 bits (649), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 131/261 (50%), Positives = 181/261 (69%), Gaps = 1/261 (0%)
Query: 92 VIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIAS 151
++ +I DPNPLV+G G +L +AG+ V G +E+ ++NIGFFSRM RG PWVR+K+AS
Sbjct: 1 MVASIADPNPLVAGHGFDRLRAAGVEVVVGPGAEESRDLNIGFFSRMIRGTPWVRLKVAS 60
Query: 152 SLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQP 211
SLD T+L N +SQWITS+ +R D H WRAR+CAILTGIGTVL DNPRL+VR + T QP
Sbjct: 61 SLDGTTALNNGASQWITSRAARADGHAWRARACAILTGIGTVLDDNPRLDVREVPTPRQP 120
Query: 212 YRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQA 270
+ +V+DS L++ +L G C ++TA+ K+ L+ G VI LPN GKVDL A
Sbjct: 121 HVVVVDSQLQLPTDANLLMDGRDCLVYTASANEAKKAALQARGATVIHLPNANGKVDLSA 180
Query: 271 VIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDK 330
++ +LG R INELH+EAG++LN +L+ EG VDELLLY++P L+G + P +L
Sbjct: 181 MLRDLGTRGINELHVEAGHKLNGSLVREGLVDELLLYLAPRLLGTGRGIADFGPLTALAD 240
Query: 331 KIKLKFHEIQKIGPDIRILAR 351
+ L+F + +G D+RI+AR
Sbjct: 241 GLALEFKSVDTLGADLRIVAR 261
>gi|410630842|ref|ZP_11341527.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
arctica BSs20135]
gi|410149540|dbj|GAC18394.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Glaciecola
arctica BSs20135]
Length = 378
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 149/371 (40%), Positives = 214/371 (57%), Gaps = 29/371 (7%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRII-SCGYTKSPGGNHAEIDALLNAAAQGYD 58
M A+Q AK ++PNP VGCVI + +I G+ K G HAE+ AL A G
Sbjct: 12 MVRAIQLAKRGEYTTTPNPNVGCVISSSQGVILGEGWHKKAGTPHAEVHALQQA---GNK 68
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPCS++G TPPC ++LI +G+ +V+ A+ DPNP VSG G+A+L AGI
Sbjct: 69 AQGATAYVTLEPCSHYGRTPPCADSLIAAGVTRVVAAMVDPNPQVSGNGLAKLQEAGIKT 128
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ GL+Q A ++N GF RM+ G PWV +K+A+SLD KT+L N SQWIT +R D
Sbjct: 129 EHGLLQTSAEQLNRGFIKRMRTGKPWVTVKLAASLDGKTALGNGLSQWITGPLARQDVQR 188
Query: 179 WRARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLR------ 221
RA+ CAIL+G GTV+ DNP LNVR S K QP RI++D +
Sbjct: 189 HRAKCCAILSGSGTVIADNPMLNVRYAELNLAADVLSQKDLRQPLRILLDGRNQLPSTLT 248
Query: 222 -IDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKI 280
+ PF L G + P ++ + + P N K+DL V+ +LG+ ++
Sbjct: 249 CLQPFENNLAGN---VLLINGQPSVQQFSQHVNQ--WQAPFNGNKLDLIKVMSKLGEMQL 303
Query: 281 NELHIEAGYQLNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEI 339
N + +EAG +L AL+ +DEL+LY +P LIG A N+F P +DK I L + +I
Sbjct: 304 NHIWVEAGAKLAGALLQNNLIDELILYQAPKLIGGAGQNLFDTMPIEMMDKVINLTWTDI 363
Query: 340 QKIGPDIRILA 350
+++G D+++ A
Sbjct: 364 RQVGVDVKMTA 374
>gi|238918989|ref|YP_002932503.1| riboflavin biosynthesis protein RibD, putative [Edwardsiella
ictaluri 93-146]
gi|238868557|gb|ACR68268.1| riboflavin biosynthesis protein RibD, putative [Edwardsiella
ictaluri 93-146]
Length = 373
Score = 254 bits (648), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 211/354 (59%), Gaps = 19/354 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++PNP VGCV+V++ RI+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 25 FTTTPNPNVGCVLVRDDRIVGEGFHLRAGEPHAEVLALRMA---GEQARGATAYVTLEPC 81
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+V+ GLM EA IN
Sbjct: 82 SHHGRTPPCADALVAAGVSRVVAAMQDPNPHVAGRGLYRLQQAGIAVQHGLMLAEAEAIN 141
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P+V++K+ +SLD +T++ + SQWITS +R D +RA+S AIL+
Sbjct: 142 KGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSAAARADVQRYRAQSSAILSSSA 201
Query: 192 TVLKDNPRLNVR--SIKTS----------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P L VR S+ QP R+++DS+ R+ P ++ G +
Sbjct: 202 TVLADDPALTVRWDSLDEDTQRLYPREHLRQPLRVIVDSHNRVTPQHGLVAQPGETLLAR 261
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
D P + + + +P + +DL ++++LGK ++N + +EAG +L AL+ G
Sbjct: 262 ID-PDTQDWPPSVSQ--LAVPRHGEGLDLVLLMMQLGKMQLNSVWVEAGPRLAGALLQAG 318
Query: 300 CVDELLLYISPILIGEAY-NMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
VDEL++Y++P+L+G+A + LP L L F ++ ++G D+R+ R
Sbjct: 319 LVDELIVYLAPMLLGDAARGLCHLPGLERLGDAPALTFSDVTRVGNDLRLTLRM 372
>gi|418292847|ref|ZP_12904777.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
gi|379064260|gb|EHY77003.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri ATCC
14405 = CCUG 16156]
Length = 366
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 140/366 (38%), Positives = 205/366 (56%), Gaps = 25/366 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + S+ PNPRVGCVIV + ++ G+ G HAE+ AL A G
Sbjct: 8 MARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQA---GERA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EAL+K+G+ +V+ A+ DPNP V+G G+ L SAGI V
Sbjct: 65 RGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLKLLRSAGIEVA 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R +
Sbjct: 125 SGVLEGEARELNAGFIKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RARS +LTG TVL D RL VR ++ P R+++D LR+ PF
Sbjct: 185 RARSSVVLTGADTVLMDAARLTVRGDELGLDAETTALALQRPPLRVLVDGRLRVPLDAPF 244
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ AT + GHE++VL +VDL A++ EL R NE+ +
Sbjct: 245 FQA-----GPALVATTVAGHEGAFAGAGHELLVLGQE--RVDLTALLRELAARGANEVLV 297
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G +DE ++++ +G P + + +LK +I+ +G D
Sbjct: 298 EAGPRLVGAFASLGLIDEYQVFMAAKFLGSTARPLLELPLECMTEARELKIVDIRAVGDD 357
Query: 346 IRILAR 351
+I+AR
Sbjct: 358 WKIVAR 363
>gi|398891069|ref|ZP_10644509.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM55]
gi|398187304|gb|EJM74648.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM55]
Length = 377
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 216/365 (59%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVIVQDGQIVGEGWHVRAGEPHAEVHALRAA---GEQA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGTAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL DN RL VR ++ S P R+++D LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTALAMSRPPLRVLVDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++P G+VDL+ +++EL R +NE+ +
Sbjct: 252 F---KAGPALV--ATCVAVEEQYAN--GPECLIVPGYDGQVDLRQLLVELAARGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQLGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKEAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|312963303|ref|ZP_07777786.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens WH6]
gi|311282383|gb|EFQ60981.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens WH6]
Length = 378
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 210/369 (56%), Gaps = 33/369 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ +I+ G+ + G HAE+ AL A G
Sbjct: 16 MARALELARNGLYTTHPNPRVGCVIVRDGQIVGEGWHERTGQPHAEVHALR---AAGDKA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G+TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI V+
Sbjct: 73 RGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGIEVR 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R
Sbjct: 133 SGVLEGEARALNRGFLKRMEHGLPFVRVKMAMSLDGRTAMASGESQWITGPAARAAVQRL 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK-----------TSHQPYRIVIDSYLRID---PF 225
RA + +LTG TVL D RL VR+ + S P R++ID LR+ PF
Sbjct: 193 RAEASVVLTGADTVLADGARLTVRAAELGLDAETTALVMSRPPLRVLIDGRLRVPLNAPF 252
Query: 226 FRVLKGGG----SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
F K G +C+ P G E +V+P G+VDL++ ++ L R +N
Sbjct: 253 F---KAGPALVITCVTAQNQFPR--------GPECLVVPGVEGQVDLRSALVALAARGVN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQK 341
E+ +EAG L A +G VDE +++++ +G A P L +LK E++
Sbjct: 302 EVLVEAGPSLAGAFAQQGLVDEYVIFVAGKFLGCAARPLLDWPLEKLADAPQLKITEMRA 361
Query: 342 IGPDIRILA 350
+G D R+ A
Sbjct: 362 VGDDWRVTA 370
>gi|229592849|ref|YP_002874968.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens
SBW25]
gi|229364715|emb|CAY52681.1| riboflavin biosynthesis protein RibD [includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase]
[Pseudomonas fluorescens SBW25]
Length = 369
Score = 254 bits (648), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 210/369 (56%), Gaps = 33/369 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ +++ G+ G HAE+ AL A G
Sbjct: 7 MARALELARKGLYTTHPNPRVGCVIVRDGQVVGEGWHVRTGEPHAEVHALR---AAGDKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G+TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI V+
Sbjct: 64 RGATAYVTLEPCSHYGHTPPCADALVSAGLARVVAAMQDPNPEVAGRGMQRLAQAGIDVR 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM++G+P+VR+K+A SLD +T++ + SQWIT +R
Sbjct: 124 SGVLESEARALNRGFLKRMEQGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA + +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 184 RAEASVVLTGADTVLADGARLTVRAAELGLDDATTALAMSRPPLRVLIDGRLRVPLNAPF 243
Query: 226 FRVLKGGG----SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
F K G +C+ P G E +V+P G+VDL++ ++ L R +N
Sbjct: 244 F---KAGPALVITCVTAENQFPR--------GPECLVVPGVEGQVDLRSALVALAARGVN 292
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQK 341
++ +EAG L A +G VDE +++++ +G A P L +LK E++
Sbjct: 293 DVLVEAGPSLAGAFAQQGLVDEYVIFVAGKFLGSAARPLLDWPLDKLADAPQLKITEMRA 352
Query: 342 IGPDIRILA 350
+G D R+ A
Sbjct: 353 VGDDWRVTA 361
>gi|386019403|ref|YP_005937427.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri DSM
4166]
gi|327479375|gb|AEA82685.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri DSM
4166]
Length = 366
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 141/366 (38%), Positives = 209/366 (57%), Gaps = 25/366 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + S+ PNPRVGCVIV + ++ G+ G HAE+ AL A G
Sbjct: 8 MARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQA---GERA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EAL+K+G+ +V+ A+ DPNP V+G G+ +L SAGI V
Sbjct: 65 RGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGIEVA 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R +
Sbjct: 125 SGVLEGEARELNAGFTKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RARS +LTG TVL D RL VR ++ P R+++D LR+ PF
Sbjct: 185 RARSSVVLTGADTVLMDAARLTVRGAELGLDAETTALALQRPPLRVLVDGRLRVPLDAPF 244
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + T + + GHE +VL +VDL +++ EL R NE+ +
Sbjct: 245 F---QAGPALVVTV--VAGCEETYRRAGHEALVLGQE--RVDLTSLLRELAARGANEVLV 297
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G +DE L+++ +G + P + + +LK +I+ +G D
Sbjct: 298 EAGPRLVGAFASLGLIDEYQLFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDD 357
Query: 346 IRILAR 351
+ILAR
Sbjct: 358 WKILAR 363
>gi|254480859|ref|ZP_05094105.1| riboflavin biosynthesis protein RibD [marine gamma proteobacterium
HTCC2148]
gi|214038654|gb|EEB79315.1| riboflavin biosynthesis protein RibD [marine gamma proteobacterium
HTCC2148]
Length = 371
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 211/362 (58%), Gaps = 16/362 (4%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ S PNP VGCV+ ++ +I G+T+ GGNHAE+ AL A+ D
Sbjct: 10 MARALQLARRGQYSCMPNPHVGCVLERDGAVIGEGFTQPAGGNHAEVQAL----AEAGDA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC +ALI +G+ +V AI DPNPLV+G G+ +L +AGI V+
Sbjct: 66 SGATAYVTLEPCSHIGKTGPCADALITAGVSRVFAAIEDPNPLVAGNGLDKLRAAGIEVE 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A ++ GF SRM G VR K+A SLD +T++ + SQWIT +R D
Sbjct: 126 VGLLEADARKVIPGFISRMTGGRGRVRAKLAMSLDGRTAMASGESQWITGPAARADVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS-----------IKTSHQPYRIVIDSYLRIDPFFRV 228
RA SCA++TGIGTVL D+ L VR+ + + +QP R+V+DS L+ +
Sbjct: 186 RAMSCAVITGIGTVLSDDCSLTVRAAELGLPVAEAELASLNQPLRVVLDSNLQTPASAAI 245
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
L G + + + G + + L + ++L +I L R+ NE+ +E G
Sbjct: 246 LDGAAPTLICHDEKLDASTAIVASGVDRLALGGDENGLNLAQLIDYLSARQSNEILVECG 305
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A + EG +DEL++Y++P+L+G A P ++ +KI L+ +++K+G D R+
Sbjct: 306 PRLAGAFVREGLLDELIVYMAPVLMGSAARPLLDLPLEAMAQKIPLQIEDMRKVGDDWRM 365
Query: 349 LA 350
A
Sbjct: 366 TA 367
>gi|192359452|ref|YP_001983157.1| riboflavin biosynthesis protein RibD [Cellvibrio japonicus Ueda107]
gi|190685617|gb|ACE83295.1| riboflavin biosynthesis protein RibD [Cellvibrio japonicus Ueda107]
Length = 383
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 227/371 (61%), Gaps = 25/371 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + ++ PNPRVGCV+VK ++II+ G+ G HAE++AL AA Q
Sbjct: 11 MARALRLAERGLYTTMPNPRVGCVLVKNQQIIAEGWHVRAGEGHAEVNALRIAAEQ---A 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G T PC++ALI +G+ +V+ A+ DPNPLVSG+G+ +L +AGI V
Sbjct: 68 RGATAYVTLEPCNHTGKTGPCSQALIDAGVARVVYAMEDPNPLVSGRGLERLAAAGIEVD 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
L +++A +N GF +RM+R P +R K+A SLD +T++ + S+WITS ++R D
Sbjct: 128 GPLFEEQARALNPGFITRMERKRPLLRCKMAMSLDGRTAMASGESKWITSPKARADVQRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK---------TSHQPYRIVIDSYLRIDPFFRVLK 230
RA SCAI+TGIG+VL+DN +L +R+ + QP R+++DS L++ +++
Sbjct: 188 RAASCAIVTGIGSVLQDNSQLTLRARELGLPRAEDIARRQPLRVILDSRLQLPRDALIMQ 247
Query: 231 GG---------GSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKI 280
G + ++ H E++ LP G++DL+A++ EL +R+
Sbjct: 248 TADPNSPELVPGPILLVHNGTADGAQLDGWPAHVELLALPGRDGRIDLEALVRELAQRQC 307
Query: 281 NELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEI 339
NE+ IEAG L A + G +DE+++Y++P L+G +A +F LP ++ + LK ++
Sbjct: 308 NEVLIEAGATLAGAFLRRGLLDEVVVYMAPKLLGSQARPLFELPLE-TMSASLALKITDM 366
Query: 340 QKIGPDIRILA 350
+ +G D RI A
Sbjct: 367 RALGQDWRITA 377
>gi|326390344|ref|ZP_08211903.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
ethanolicus JW 200]
gi|325993621|gb|EGD52054.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
ethanolicus JW 200]
Length = 360
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 139/304 (45%), Positives = 198/304 (65%), Gaps = 7/304 (2%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
++PNP VG VIVK +II GY + GG HAE++AL NA DV ST+++TLEPCS+
Sbjct: 19 TNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVE---DVKGSTMFVTLEPCSH 75
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
+G TPPC E +IKSGIK+V IA+ DPNP VSG + +L AGI V+ G+M+KEA ++N
Sbjct: 76 YGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNSIKRLKEAGIEVQVGMMEKEARKLNEI 135
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F + IP+V +K A S+D K + YN +S+WIT+++SR +H R R AI+ G+ TV
Sbjct: 136 FVKYITTKIPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNTV 195
Query: 194 LKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMK---RKILE 250
+KDNP L R ++ P RI++DS R V++ + AT M RK LE
Sbjct: 196 IKDNPMLTTR-LEGYKSPVRIIVDSRGRTPLASNVIRDKAAKTIIATTELMPNSVRKKLE 254
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
D+ EVI+L N+ GKV L+ ++I+LG+R I+ + IE G LN + + EG VD+++ +ISP
Sbjct: 255 DMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSALKEGIVDKVMFFISP 314
Query: 311 ILIG 314
+IG
Sbjct: 315 RIIG 318
>gi|56460970|ref|YP_156251.1| riboflavin-specific deaminase/reductase [Idiomarina loihiensis
L2TR]
gi|56179980|gb|AAV82702.1| Riboflavin-specific deaminase/reductase [Idiomarina loihiensis
L2TR]
Length = 375
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 141/349 (40%), Positives = 205/349 (58%), Gaps = 15/349 (4%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ + PNP VGCVI ++ G+ G HAE+ AL A G V +T Y+TLEPC
Sbjct: 26 MTTRPNPAVGCVITLGTEVVGEGWHHQAGEPHAEVHAL---RAAGQKVRGATAYVTLEPC 82
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI++G+K+V++A+ DPNP VSG G+ +L +AGISV G++Q A +N
Sbjct: 83 SHIGRTPPCCDALIEAGVKRVVVAMQDPNPRVSGNGIQRLKAAGISVDVGVLQLAAESLN 142
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF SRM R PWV +K+A+SLD KT+L + SQWITS +SR+D +RA++ AIL+G
Sbjct: 143 PGFISRMTRQRPWVTLKMATSLDAKTALSDGRSQWITSSDSRSDVQFFRAQADAILSGAA 202
Query: 192 TVLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDL 242
T+L D+P+L VR + QP RI+IDS R++ RV T
Sbjct: 203 TILADDPKLTVRVDQWPKSRPLPEPLKQPVRIIIDSQHRVNDEARVFDSPAPVWLVRT-T 261
Query: 243 PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVD 302
P K HE+I+ + GKV L A+++EL R+IN+L E G L ALI + D
Sbjct: 262 PGKPSCHPHC-HELIIAADPNGKVSLPALMVELANREINQLWTECGANLAGALIQQQLCD 320
Query: 303 ELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
L++Y S L+G ++ + +L + K + +++GPD R++A
Sbjct: 321 RLMIYSSGQLLGHHGRSVIDMNEPLNLASAPRFKIIDRRQVGPDQRLVA 369
>gi|261856455|ref|YP_003263738.1| riboflavin biosynthesis protein RibD [Halothiobacillus neapolitanus
c2]
gi|261836924|gb|ACX96691.1| riboflavin biosynthesis protein RibD [Halothiobacillus neapolitanus
c2]
Length = 386
Score = 253 bits (647), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 140/357 (39%), Positives = 211/357 (59%), Gaps = 14/357 (3%)
Query: 2 TLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYN 61
LAL + L+ + PNPRVGCVIV ++ G+ GG HAE+ AL A G
Sbjct: 21 ALALAERGLT-TTQPNPRVGCVIVNAGEVVGRGFHALAGGPHAEVFALQEA---GERAKG 76
Query: 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121
+T Y+TLEPC++ G TP C L +G+++V+ A+ DP+P V+G+G A L +AG+ V+ G
Sbjct: 77 ATAYVTLEPCAHVGRTPACAPQLADAGVRRVVTAMTDPDPRVAGEGHAILRTAGVQVESG 136
Query: 122 LMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA 181
L++ EA +N GF SR++RG PWV +KIA SLD +T+L N S+WIT + +R+D RA
Sbjct: 137 LLEAEARWLNRGFLSRIERGRPWVTVKIAQSLDGRTALANGESRWITGEAARHDVQFLRA 196
Query: 182 RSCAILTGIGTVLKDNPRLNVR------SIKTS-HQPYRIVIDSYLRIDPFFRVLKGGGS 234
R A+LTG+ TVL D+ RLNVR +I + QP R+V+DS LR+ PF + G
Sbjct: 197 RHAAVLTGVDTVLTDDARLNVRLSPEALAIDGAVRQPLRVVLDSGLRLPPFAPIFDVQGE 256
Query: 235 C-IFTA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLN 292
I+T D + L G +++ P +DL ++ +L + I+E+ +E+G +L
Sbjct: 257 VRIYTRDVDAGIHHDGLTARGVQLVAAPQAEFGLDLGFILRDLALQGISEVLVESGPKLA 316
Query: 293 TALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
A + +G VDEL++Y +P+L+G +A L LD + + + +G DIRI
Sbjct: 317 GAFVDQGWVDELIIYQAPVLLGHKAQPCLDLASPIRLDDAPRWQIRDTTPVGQDIRI 373
>gi|256751435|ref|ZP_05492313.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
ethanolicus CCSD1]
gi|256749654|gb|EEU62680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
ethanolicus CCSD1]
Length = 360
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 142/306 (46%), Positives = 201/306 (65%), Gaps = 9/306 (2%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+++PNP VG VIVK +II GY + GG HAE++AL NA DV ST+++TLEPCS
Sbjct: 18 HTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVE---DVKGSTMFVTLEPCS 74
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC E +IKSGIK+V IA+ DPNP VSG G+ +L AGI V G+M+K+A ++N
Sbjct: 75 HYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVGIMEKKARKLNE 134
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
F + P+V +K A S+D K + YN +S+WIT+++SR +H R R AI+ G+ T
Sbjct: 135 IFVKYITTKFPFVIVKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNT 194
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVL---KGGGSCIFTATDLPMK-RKI 248
V+KDNP L R ++ P RI++DS RI PF + K + I T +P RK
Sbjct: 195 VIKDNPMLTTR-LEGYKSPVRIIVDSRGRI-PFDSNVIRDKTAKTIIATTELMPNNVRKK 252
Query: 249 LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYI 308
LED+ EVI+L N+ GKV L+ ++I+LG+R I+ + IE G LN +L EG VD+++ +I
Sbjct: 253 LEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSLFKEGIVDKVMFFI 312
Query: 309 SPILIG 314
SP +IG
Sbjct: 313 SPRIIG 318
>gi|398994114|ref|ZP_10697036.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM21]
gi|398133173|gb|EJM22401.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM21]
Length = 377
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 215/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV++ +++ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVIVRDGQVVGEGWHVRTGEPHAEVHALR---AAGEQA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G+TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGHTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL DN RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDPEQTALAMSRPPLRVLIDGRLRVPLNAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++P G+VDL ++IEL R +NE+ +
Sbjct: 252 F---KAGPALV--ATCVAVEEQYAN--GPECLIVPGVDGQVDLHRLLIELAHRGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A +G VDE ++I+ +G + P + +LK +I+ +G D
Sbjct: 305 EAGPRLAGAFAQQGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPELKITDIRAVGDD 364
Query: 346 IRILA 350
R+ A
Sbjct: 365 WRVTA 369
>gi|443468797|ref|ZP_21059004.1| Riboflavin-specific deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas pseudoalcaligenes KF707]
gi|442898016|gb|ELS24833.1| Riboflavin-specific deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas pseudoalcaligenes KF707]
Length = 368
Score = 253 bits (647), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 212/365 (58%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ +++ G+ G HAE+ AL AA +
Sbjct: 9 MARALELARKGLYSTHPNPRVGCVIVRDGQVVGEGWHVRAGEPHAEVHALRQAAER---A 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 66 RGATAYVTLEPCSHHGRTPPCADALVAAGVGRVVAAMQDPNPQVAGRGLKRLEDAGIAVS 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM++G+P+VR+K+A SLD +T++ + SQWIT +R
Sbjct: 126 SGVLEAEAKALNAGFIKRMEQGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RAR+ +LTG TVL D RL VR ++ S P R+++D LR+ PF
Sbjct: 186 RARASVVLTGADTVLMDAARLTVRPDELGLDAELTALAASRPPLRVLVDGRLRVPSDVPF 245
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + TA + R+ GHE+I +P G+VDL+ ++ L R +NE+ +
Sbjct: 246 F---QAGPALVATALE---GREA--PAGHELIAVPGADGRVDLRRLLEALASRGVNEVLV 297
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++ + +G P + + +L E++ +G D
Sbjct: 298 EAGPRLAGAFAQAGLVDEYQIFFAGKFLGSGARPLLDWPLERMAEAPELSIVEVRAVGED 357
Query: 346 IRILA 350
R++A
Sbjct: 358 WRVIA 362
>gi|238752768|ref|ZP_04614237.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia rohdei
ATCC 43380]
gi|238709026|gb|EEQ01275.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia rohdei
ATCC 43380]
Length = 369
Score = 253 bits (646), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 219/365 (60%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L +SPNP VGCV+V++ I+ GY + G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTSPNPNVGCVLVRDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T ++TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 65 QGATAFVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPEVAGRGLYKLKQAGIDVN 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA N+GF RM+ G P++++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGLMLAEAEAANLGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR----SIKTS--------HQPYRIVIDSYLRIDPFFR 227
RA S AIL+ TVL D+P L VR +T QP RI++DS+ R+ P +
Sbjct: 185 RAESSAILSTSATVLADDPALTVRWQALDAETQALYPEDKLRQPIRIILDSHNRVTPEHK 244
Query: 228 VLKGGGSCIFT---ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
V + G C A P + E ++LP + VDL ++++LGKR+IN +
Sbjct: 245 VTQQDGPCWLARVEADTQPWPANV------EQLLLPRHGNGVDLVLLMMQLGKRQINSVW 298
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG QL AL+ G VDEL+LYI+P L+G +A + L L + + F E++++G
Sbjct: 299 VEAGPQLAGALLQAGVVDELILYIAPKLLGTDARGLCQLAGLTHLLQAPEFVFSEVRQVG 358
Query: 344 PDIRI 348
PD+R+
Sbjct: 359 PDLRL 363
>gi|397167140|ref|ZP_10490583.1| riboflavin biosynthesis protein RibD [Enterobacter radicincitans
DSM 16656]
gi|396091286|gb|EJI88853.1| riboflavin biosynthesis protein RibD [Enterobacter radicincitans
DSM 16656]
Length = 367
Score = 253 bits (646), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 147/360 (40%), Positives = 210/360 (58%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNPRVGCVIV I+ G+ G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPRVGCVIVNNGEIVGEGFHYRAGEPHAEVHALRMA---GERA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L GI V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCEALIAAGVARVVAAMQDPNPQVAGRGLYRLQQEGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P+V++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEALNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSAQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P +
Sbjct: 184 RAQSHAILTSSATVLADDPSLTVRWEELDADSQALYPQENVRQPVRIVIDSQNRVTPAHK 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G F T + G I++P + G VDL +++ LGK++IN + +EA
Sbjct: 244 LIGLPGETWFARTKADERSW---PAGVREIIVPEHHGHVDLVMLMMLLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A + LP +L KF+EI+++GPD+
Sbjct: 301 GATLAGALLQAGLVDELVVYLAPKLLGTDARGLCVLPGLSALADAPHFKFNEIRQVGPDV 360
>gi|387895873|ref|YP_006326170.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens A506]
gi|387164145|gb|AFJ59344.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens A506]
Length = 375
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/369 (37%), Positives = 209/369 (56%), Gaps = 33/369 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ +I+ G+ + G HAE +AL A G
Sbjct: 13 MARALELARKGLYTTHPNPRVGCVIVRDGQIVGEGWHERTGEPHAEPNALR---AAGDKA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +AL+ +G+ +V+ + DPNP V+G+G+ +L AGI V+
Sbjct: 70 RGATVYVTLEPCSHHGRTPPCADALVTAGVARVVAGMQDPNPEVAGRGMQRLAQAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+RG+P+VR+K+A SLD +T++ + SQWIT +R
Sbjct: 130 SGVLETEARALNPGFLKRMERGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA + +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 190 RAEASVVLTGADTVLGDGARLTVRAAELGLDDATTALAMSRPPLRVLIDGRLRVPLNAPF 249
Query: 226 FRVLKGGG----SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
F K G +C+ P G E +V+P G+VDL++ ++ L R +N
Sbjct: 250 F---KAGPALVITCVTPENQFPR--------GPECLVVPGVEGQVDLRSALVALAARGVN 298
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQK 341
++ +EAG L A +G VDE +++I+ +G A P L +LK E++
Sbjct: 299 DVLVEAGPSLAGAFAQQGLVDEYVIFIAGKFLGSAARPLLDWPLDKLADAPQLKITEMRA 358
Query: 342 IGPDIRILA 350
+G D R+ A
Sbjct: 359 VGDDWRVTA 367
>gi|295096804|emb|CBK85894.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
/5-amino-6-(5-phosphoribosylamino)uracil reductase
[Enterobacter cloacae subsp. cloacae NCTC 9394]
Length = 367
Score = 253 bits (646), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 206/348 (59%), Gaps = 19/348 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC EALI +G+ +V+ A+ DPNP V G+G+ +L GI V GLM ++A IN
Sbjct: 76 SHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVVGRGLYRLQQEGIDVSHGLMMQDAENIN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ N SQWITS ++R D RA+S AILT
Sbjct: 136 KGFLKRMRTGFPFIQLKLGASLDGRTAMANGESQWITSPQARRDVQRLRAQSHAILTSSE 195
Query: 192 TVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + + QP RI++DS R+ P R+++ G
Sbjct: 196 TVLADDPAMTVRWEELNADTQALYPQENLRQPLRIIVDSQNRVTPEHRIVQQPGETWIAR 255
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
T R+ E G I++P + G +DL +++ LGK+++N + +EAG L AL+ G
Sbjct: 256 TKED-TREWPE--GVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVEAGPMLAGALLQAG 312
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
VDE L+Y++P L+G +A +F LP L +L F EI+ +GPD+
Sbjct: 313 LVDEFLVYVAPKLLGNDARGLFVLPGLEKLADAPQLSFSEIRPVGPDV 360
>gi|378953127|ref|YP_005210615.1| protein RibD [Pseudomonas fluorescens F113]
gi|359763141|gb|AEV65220.1| RibD [Pseudomonas fluorescens F113]
Length = 377
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 133/362 (36%), Positives = 212/362 (58%), Gaps = 19/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNPRVGCVIV+E +I+ G+ G HAE+ AL A G
Sbjct: 15 MARALELARRGHYTTHPNPRVGCVIVREGQIVGEGWHIRAGEPHAEVHALRAA---GEQA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNEGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGAAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RA++ +LTG TVL DN RL VR ++ S P R+++D LR+
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTALVMSRPPLRVLVDGRLRVPLDAAF 251
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
K G + + AT + ++ + G E +++ + G+VDL +++EL R +NE+ +EAG
Sbjct: 252 FKAGPALV--ATCMAVEEQYAN--GPECMIVAGDDGQVDLHRLLVELAGRGVNEVLVEAG 307
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A +G VDE ++I+ +G + P + +LK EI+ +G D R+
Sbjct: 308 PRLAGAFAQQGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPQLKITEIRAVGDDWRV 367
Query: 349 LA 350
+A
Sbjct: 368 IA 369
>gi|256821696|ref|YP_003145659.1| riboflavin biosynthesis protein RibD [Kangiella koreensis DSM
16069]
gi|256795235|gb|ACV25891.1| riboflavin biosynthesis protein RibD [Kangiella koreensis DSM
16069]
Length = 372
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 143/342 (41%), Positives = 207/342 (60%), Gaps = 14/342 (4%)
Query: 17 NPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGY 76
NPRVGCV+VK+ II G+ + PG HAEI+AL +A G +T Y+TLEPC++ G
Sbjct: 28 NPRVGCVLVKDNIIIGEGWHEKPGFAHAEINALNHA---GESAKGATAYVTLEPCAHHGK 84
Query: 77 TPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFS 136
T PC EAL+++G+ +V+ A+ DPNPLV+GKG+ L AGI + GLMQ +A +N GF
Sbjct: 85 TGPCAEALVEAGVARVVAAMLDPNPLVAGKGMKILEKAGIKTEYGLMQAQAETLNPGFIK 144
Query: 137 RMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKD 196
RM +G+P V K+ SLD +T++ SQWIT +R D RA S AI+TG GTV+ D
Sbjct: 145 RMTKGLPRVIAKVGMSLDGRTAMAIGESQWITGASARRDVQRLRAESGAIITGSGTVVID 204
Query: 197 NPRLNVRS---IKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILED 251
NP +NVR H QP R++IDS ++P ++ G C + L K
Sbjct: 205 NPSMNVREQAFTANPHFTQPVRVIIDSQNIVEPDAKIFSHEGHCWLVSGHLSEKGYPANV 264
Query: 252 LGHEVIVLPN----NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLY 307
V +LP + KVDL+A++I L + IN++ IEAG L A + + VDEL++Y
Sbjct: 265 EQKTVALLPGKDEVSHQKVDLKALLIMLAEAGINDVLIEAGSGLVGAFVAQELVDELVVY 324
Query: 308 ISPILIGEAYN-MFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
++P L+G A MF LP ++ + I+L ++I++IG D+R+
Sbjct: 325 MAPKLMGSAARPMFQLPLE-TMQQNIELTLNDIRQIGNDLRL 365
>gi|398874787|ref|ZP_10629987.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM74]
gi|398194010|gb|EJM81095.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM74]
Length = 377
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 212/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV+ +I+ G+ + G HAE+ AL A G
Sbjct: 15 MARALELARKGQYTTHPNPRVGCVIVQGGQIVGEGWHERAGEPHAEVHALRAA---GEQA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL DN RL VR ++ S P R+++D LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTALAMSRPPLRVLVDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + T + + G E +++P G+VDL+ +++EL R +NE+ +
Sbjct: 252 F---KAGPALVATCVAVEEQYAN----GPECLIVPGYDGQVDLRQLLVELAARGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQLGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|374334970|ref|YP_005091657.1| riboflavin biosynthesis protein RibD [Oceanimonas sp. GK1]
gi|372984657|gb|AEY00907.1| riboflavin biosynthesis protein RibD [Oceanimonas sp. GK1]
Length = 371
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 146/368 (39%), Positives = 223/368 (60%), Gaps = 26/368 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ +SPNP VGCV+VK+ ++ G+ + GG HAE+ AL A A
Sbjct: 10 MARALELARRGRFTTSPNPAVGCVVVKDGNLVGEGFHQRAGGPHAEVFALREAGAA---A 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC + LI +G+ +V+ A+ DPNP V+G+G+A L AGI +
Sbjct: 67 QGATAYVTLEPCSHHGRTPPCAQGLIDAGVTRVVAAMVDPNPRVAGRGLAMLREAGIQAE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM + A +N+GF RM+ G P+V +K+A+SLD +T+L N SQWIT +R D
Sbjct: 127 AGLMSEAAEAVNVGFLHRMRTGRPFVTLKLAASLDGRTALANGESQWITGPAARRDVQRH 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+SCA+L+G TVL DN LNVR S++ ++ QP RIVID+ R+ R
Sbjct: 187 RAQSCALLSGADTVLMDNAALNVRWAELPASLRHAYAEQELRQPLRIVIDTQNRLHSGLR 246
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEV--IVLP-NNLGKVDLQAVIIELGKRKINELH 284
+ G + ++ ++ G EV VLP + GK+DL ++ ELG+R++N L
Sbjct: 247 LFAQPGPILL------LRGQVTGGFGDEVEECVLPLTSHGKLDLALLLDELGRRQLNHLW 300
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG L AL+ G ++EL+LY +P+L+G A + LP ++ + +L + + + +G
Sbjct: 301 VEAGATLGGALVAAGLINELVLYQAPMLMGNPARGLLALPEFTAMSQPPRLAWQDCRFVG 360
Query: 344 PDIRILAR 351
D++++AR
Sbjct: 361 GDLKLIAR 368
>gi|330505155|ref|YP_004382024.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas
mendocina NK-01]
gi|328919441|gb|AEB60272.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas
mendocina NK-01]
Length = 371
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 215/365 (58%), Gaps = 22/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ I+ G+ G HAE+ AL A G
Sbjct: 9 MARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQA---GDKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G G+ +L++AGI V+
Sbjct: 66 RGATAYVTLEPCSHHGRTPPCADALVAAGVSRVVAAMQDPNPQVAGNGLLRLMNAGIEVR 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K A SLD +T++ + SQWIT +R +
Sbjct: 126 SGVLESEARALNAGFIKRMETGLPFVRVKSAMSLDGRTAMASGESQWITGPAARAEVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA+S +L+G TVL D+ RL VR ++ P R+++D LR+ F
Sbjct: 186 RAQSSVVLSGADTVLADDARLTVRPDELGLGAELTALAQRRPPLRVLVDGRLRVPVSKAF 245
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+V G + + T + + L D GHE++ +P + G VDL+ +++EL R +NE+ +
Sbjct: 246 FQV---GPALVATCAAAAARDRYLAD-GHELLAVPGSNGHVDLRKLLLELAGRGVNEVLV 301
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++++P L+G P + + +L+ +I+ +G D
Sbjct: 302 EAGPRLAGAFARAGLVDEYRIFVAPKLLGSHARPLLDLPLNRMAEAPELQILDIRAVGDD 361
Query: 346 IRILA 350
+I A
Sbjct: 362 WQITA 366
>gi|426411726|ref|YP_007031825.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. UW4]
gi|426269943|gb|AFY22020.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. UW4]
Length = 377
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 212/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV+ +I+ G+ + G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTDPNPRVGCVIVQGGQIVGEGWHERAGEPHAEVHALR---AAGEQA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL DN RL VR ++ S P R+++D LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTALAMSRPPLRVLVDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + T + + G E +++P G+VDL+ +++EL R +NE+ +
Sbjct: 252 F---KAGPALVATCVAVEEQYAN----GPECLIVPGYDGQVDLRQLLVELANRGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQLGLVDEFQIFIAGKFMGSSARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|386824438|ref|ZP_10111573.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Serratia plymuthica PRI-2C]
gi|386378649|gb|EIJ19451.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Serratia plymuthica PRI-2C]
Length = 369
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 219/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMA---GERA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI V+
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPEVAGRGLYKLQQAGIDVR 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +A +N GF RM+ G P+V++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 125 HGLMLSDAEAVNPGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP RI++DS R+ P R
Sbjct: 185 RAQSAAILSTSATVLADDPSLTVRWDELDAATQSLYPRENLRQPLRIILDSRNRVTPQHR 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G+ + A P ++ +D+ E + P + G VDL ++++L KR++N + +EA
Sbjct: 245 VVRAPGAT-WLARLQPDEQSWPQDV--EQLTFPAHGGGVDLVVMMMQLAKRQVNSIWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L+ AL+ G VDEL+LYI+P L+G+ + LP L + F E+++IGPD+
Sbjct: 302 GAALSGALLQAGLVDELILYIAPKLMGDNGRGLCQLPGLERLADAPEFVFSEVRQIGPDL 361
Query: 347 RI 348
R+
Sbjct: 362 RL 363
>gi|146293872|ref|YP_001184296.1| riboflavin biosynthesis protein RibD [Shewanella putrefaciens
CN-32]
gi|145565562|gb|ABP76497.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella putrefaciens CN-32]
Length = 384
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 209/363 (57%), Gaps = 20/363 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ +II GY + G HAE+ AL A G
Sbjct: 15 MSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHALRMA---GERA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V G+G+ L AGI V
Sbjct: 72 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIEVD 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+P V +K+A+SLD KT+L N S+WIT ESR D
Sbjct: 132 VGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRDVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----SIKTS------HQPYRIVIDSYLRIDPFFRV 228
R RSCA++TGI T+L D+P LNVR S+K QP R+++DS R+ P
Sbjct: 192 RLRSCALVTGIETILADDPSLNVRYQELGSLKDRVTEAQLLQPLRVILDSRARL-PLSVA 250
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
S I + + + L V ++LP G+V L ++ LG+ N + +E
Sbjct: 251 CLAIVSPILLVSTVAYPAEFQAQLPSHVSCLLLPAIAGRVSLPELLSYLGQ-SCNHVLVE 309
Query: 287 AGYQLNTALILEGCVDELLLYIS-PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A + EG DEL+LY + IL G N+ LP + ++ L + +K+GPD
Sbjct: 310 AGATLAGAFLAEGLADELVLYQAMKILGGHGRNLLQLPDYQTMAHIPALTLVDERKLGPD 369
Query: 346 IRI 348
R+
Sbjct: 370 TRL 372
>gi|271499575|ref|YP_003332600.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech586]
gi|270343130|gb|ACZ75895.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech586]
Length = 370
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/362 (38%), Positives = 219/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ I+ GY + G HAE+ AL A G
Sbjct: 10 MARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMA---GDKA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+V+
Sbjct: 67 RGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIAVQ 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ +A +IN GF RM+ G P+V++K+ +SLD +T++ + SQWITS +SR D +
Sbjct: 127 HGVLMDQAEKINRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQSRQDVQRF 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP R+++DS R+ P R
Sbjct: 187 RAQSAAILSSSATVLADDPSLTVRWSELDADTQRLYPQSAVRQPVRVIVDSQSRVTPQHR 246
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G + D G E + +P + G +DL A+++ LGKR+IN + +EA
Sbjct: 247 LVSQPGQTWLARAS--QDAQSWPD-GVEQLTMPLHGGGIDLVALMMTLGKRQINTVWVEA 303
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G+ A ++ LP L + + ++++IGPD+
Sbjct: 304 GAHLAGALLQAGVVDELIVYLAPTLLGDAARSLCVLPGLEQLSQAPMFEMTDVRQIGPDV 363
Query: 347 RI 348
R+
Sbjct: 364 RL 365
>gi|372267546|ref|ZP_09503594.1| riboflavin biosynthesis protein RibD [Alteromonas sp. S89]
Length = 377
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/367 (38%), Positives = 212/367 (57%), Gaps = 21/367 (5%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M A+Q A+ + ++ PNPRVGCVI I+ G+ K G HAEI+AL +A G
Sbjct: 9 MGRAVQLAERGLYTTMPNPRVGCVIADANGNIVGEGWHKRAGEPHAEIEALRDA---GEQ 65
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
T Y+TLEPCS+ G T PC +ALI +G+ KV+ + DPNP VSG G+ +L AGI V
Sbjct: 66 ARGKTAYVTLEPCSHTGKTGPCADALIAAGVAKVVFGMEDPNPSVSGNGLQKLRDAGIEV 125
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ L+++ +N GF RM G+P VR K A S+D +T++ + S+W+T +R D
Sbjct: 126 EGPLLEESCRALNPGFIKRMTLGLPLVRSKSAMSIDGRTAMASGESKWVTGPAARADVQA 185
Query: 179 WRARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFR 227
RARSCA++TG+ TV DNP +NVR + QP R+++DS LR
Sbjct: 186 LRARSCAVVTGVDTVRYDNPNMNVRPDEMALPAELAAAAAEKQPLRVIVDSQLRTPAKAF 245
Query: 228 VLKGGGSCIFTATD--LPMKRKILEDLGHEVIVLP-NNLGKVDLQAVIIELGKRKINELH 284
+L+G + TD P +R LE G EV+ LP + G+V L ++ EL +R+ NE+
Sbjct: 246 ILQGDAPTLVVTTDAAAPERRARLEKAGAEVLALPADKEGRVHLGQLLQELARRECNEVL 305
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
IE+G L+ A I +G VDE+++Y++P ++G A +F LP + + + +++ +G
Sbjct: 306 IESGATLSGAFIYQGHVDEVIVYVAPKILGSSARPLFELPIER-MGSMLPITITDMRAVG 364
Query: 344 PDIRILA 350
D RI A
Sbjct: 365 HDWRITA 371
>gi|365848288|ref|ZP_09388765.1| riboflavin biosynthesis protein RibD [Yokenella regensburgei ATCC
43003]
gi|364570996|gb|EHM48595.1| riboflavin biosynthesis protein RibD [Yokenella regensburgei ATCC
43003]
Length = 367
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 140/360 (38%), Positives = 212/360 (58%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ ++ G+ G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGVVVGEGFHYRAGEPHAEVHALRMA---GDKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L GI V
Sbjct: 64 NGATAYVTLEPCSHHGRTPPCCEALIAAGVSRVVAAMQDPNPQVAGRGLHRLKEEGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ P++++K+ +SLD +T++ + SQWITS +R D
Sbjct: 124 HGLMMSEAELLNKGFLKRMRTAFPYIQLKLGASLDGRTAMASGESQWITSPAARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + + QP RIV+D ++ P R
Sbjct: 184 RAQSHAILTTAATVLADDPALTVRWDELNPDTQAIYPREALRQPLRIVLDRLGQVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G + R+ E++ + +P + G +DL ++++LGK +IN L +EA
Sbjct: 244 IVQQSGETWIVRSQ-EDNREWPENV--RALQVPEHNGHLDLVLLMMQLGKAQINSLWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A +F LP L +L+F +I+++GPD+
Sbjct: 301 GPTLAGALLQAGLVDELVVYLAPKLLGNDARGLFVLPGLEKLRDVPQLQFSQIRQVGPDL 360
>gi|387929359|ref|ZP_10132036.1| riboflavin biosynthesis protein RibD [Bacillus methanolicus PB1]
gi|387586177|gb|EIJ78501.1| riboflavin biosynthesis protein RibD [Bacillus methanolicus PB1]
Length = 371
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 141/361 (39%), Positives = 218/361 (60%), Gaps = 19/361 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL A+ ++ +SPNP VG V+VK I+ G G HAE+ A+ A G +
Sbjct: 7 MKLALSMARAAVGQTSPNPSVGAVVVKNGEILGMGAHLKAGTPHAEVHAIRTA---GENA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +Y+TLEPCS++G TPPCTE +I +GIK+V++A DPNPLV+G G+ QL AGI V+
Sbjct: 64 RGADLYVTLEPCSHYGKTPPCTELIISAGIKRVVVATLDPNPLVAGSGIKQLRQAGIEVE 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ ++EA IN FF +Q G P+V +K A +LD KT+ S+WITS ++R+D H
Sbjct: 124 VGVGKEEADNINEPFFHYIQTGKPFVTLKAAVTLDGKTAAKTGDSKWITSTQARSDVHQL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKG--GGSCIF 237
R AIL GI TVLKDNP L R + P RI++D++LRI V+K + I
Sbjct: 184 RHEHDAILVGIQTVLKDNPLLTTRLPRGGKNPIRIILDTHLRIPLDANVIKDKTAKTIII 243
Query: 238 TATDLPMKRK-ILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T +L ++ L++LG EV+ P + G++D+ ++ LGKR+I + +E G +++ + +
Sbjct: 244 TGNELDQQKAGKLQELGAEVV--PLSTGRIDINELLTVLGKRRIMSVLVEGGSKVHASFM 301
Query: 297 LEGCVDELLLYISPILIGEAYNMFTLPP------HYSLDKKIKLKFHEIQKIGPDIRILA 350
G +++ Y++P +IG M +P + D + KL+F +++IGPD++I A
Sbjct: 302 KTGAYQQVIFYVAPKIIG---GMDAIPAIGGEGLDFVRDAE-KLEFTSVERIGPDLKITA 357
Query: 351 R 351
+
Sbjct: 358 K 358
>gi|225851435|ref|YP_002731669.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1]
gi|225645583|gb|ACO03769.1| riboflavin biosynthesis protein RibD [Persephonella marina EX-H1]
Length = 365
Score = 253 bits (645), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/355 (40%), Positives = 206/355 (58%), Gaps = 4/355 (1%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+L + PNP VG VIVK+ +II G+ K G HAE +A+ +A +G+++
Sbjct: 10 MKEALRLAELRKGLTHPNPTVGAVIVKDGKIIGKGFHKKAGMPHAEREAINDAIKKGFNL 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST+Y+TLEPC ++G TPPCTEA+I IK+V+IA DPNP VSGKGV L GI
Sbjct: 70 EGSTMYVTLEPCCHYGRTPPCTEAIIDRRIKRVVIATVDPNPQVSGKGVEILKKHGIETV 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++Q EA ++N FF ++ P++ +KIA SLD K + SS+WITS+ESR H
Sbjct: 130 VGVLQDEARKLNEDFFVYIKEKRPFIHLKIAQSLDGKIATGTGSSKWITSEESRRYVHKL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
R S AI+ G TVLKDNP L VR +T QP R+V+D L+I + V +
Sbjct: 190 RRESTAIMVGTNTVLKDNPNLTVRYTETERQPLRVVLDKDLKIPEDYNVFNNEAKTVLFT 249
Query: 240 TDLPMKRKI--LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+D+ + KI LED G +++ LP + DL ++ L + L IE G L T +
Sbjct: 250 SDIADRNKIKRLEDKGVQIVRLPLKNRRFDLNDILKNLYSLDVVHLFIEGGRDLITQFLK 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
E D + ++I+P +IGE + F ++DK I L +I++ G DI + R
Sbjct: 310 EKLFDRISVFIAPKIIGEDGISSFGKLGIDTVDKSINLHLEDIKRFGDDILLQLR 364
>gi|167038695|ref|YP_001661680.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514]
gi|300913745|ref|ZP_07131062.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561]
gi|307723238|ref|YP_003902989.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513]
gi|166852935|gb|ABY91344.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X514]
gi|300890430|gb|EFK85575.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X561]
gi|307580299|gb|ADN53698.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter sp. X513]
Length = 360
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 203/318 (63%), Gaps = 8/318 (2%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL AK ++PNP VG VIVK +II GY + GG HAE++AL NA +V
Sbjct: 5 MKRALTLAKKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVE---NV 61
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST+++TLEPCS++G TPPC E +IKSGIK+V IA+ DPNP VSG G+ +L AGI V
Sbjct: 62 EGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M+KEA ++N F + P+V +K A S+D K + YN +S+WIT+++SR +H
Sbjct: 122 VGMMEKEARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKI 181
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
R R AI+ G+ TV+KDNP L R ++ P RI++DS RI V++ + A
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTR-LEGYKNPVRIIVDSRGRIPLDSNVIRDKTAKTIIA 240
Query: 240 TDLPMK---RKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T M RK LED+ EVI+L N+ GKV L+ ++I+LG+R I+ + IE G LN + +
Sbjct: 241 TTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSAL 300
Query: 297 LEGCVDELLLYISPILIG 314
EG VD+++ +ISP +IG
Sbjct: 301 KEGIVDKVMFFISPRIIG 318
>gi|315634417|ref|ZP_07889704.1| riboflavin biosynthesis protein RibD [Aggregatibacter segnis ATCC
33393]
gi|315477007|gb|EFU67752.1| riboflavin biosynthesis protein RibD [Aggregatibacter segnis ATCC
33393]
Length = 374
Score = 252 bits (644), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 142/369 (38%), Positives = 215/369 (58%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK+ ++ G+ G HAE+ AL A G
Sbjct: 13 MQLALDLAKQGEFTTTPNPSVGCVLVKDGEVVGKGFHAKAGEPHAEVMALREA---GEKA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + L+++G+ KVI A+ DPNP V+GKG+ L AGI
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILSDAGIQSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++ A ++N GF RM+ G P+V++K+A S+D KT++ + S+WIT ++R D +
Sbjct: 130 VGLLEENAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARADVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR +K S+ QP R+++DS ++ F+
Sbjct: 190 RAKASAILSTSQTVLADDPSLNVRWEELPLDVKASYAQEKLRQPVRVILDSSHKVRSDFK 249
Query: 228 VLKGG------GSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
V G ++ TD P L+ L N G+ LQ+++ ELGKR+IN
Sbjct: 250 VFSTESPVWLVGEEDYSLTDFPPFTDYLK--------LDRNQGETRLQSLMAELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQ 340
L +EAG L ALI E VDEL++Y++P L+G +A ++ LP L + +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDQARDLCHLPNLTQLADAPLWQLQSCE 361
Query: 341 KIGPDIRIL 349
+G D++++
Sbjct: 362 PVGDDLKLI 370
>gi|375111196|ref|ZP_09757407.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Alishewanella jeotgali KCTC 22429]
gi|374568738|gb|EHR39910.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Alishewanella jeotgali KCTC 22429]
Length = 382
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 215/366 (58%), Gaps = 26/366 (7%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VG ++VK+ +++ G+ + GG HAE+ AL A G +T Y+T
Sbjct: 19 AQGRFTTDPNPNVGALVVKDGQVLGEGFHQQAGGPHAEVFALQQA---GSAARGATCYVT 75
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPC+++G TPPC EAL+K+G+ +V+IA+ DPNPLV+GKGVA L AGISV GL+ +EA
Sbjct: 76 LEPCAHYGRTPPCAEALVKAGVARVVIAMLDPNPLVAGKGVAILQQAGISVAHGLLTEEA 135
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF SRM+R P++ +K+A+SLD +T+L N SQW+TS +R D +WRA+ AIL
Sbjct: 136 RALNPGFLSRMERQRPYLYLKLAASLDGRTALANGQSQWLTSDAARADVQLWRAQVSAIL 195
Query: 188 TGIGTVLKDNPRLNVRSIKTS----------------HQPYRIVIDSYLRI---DPFFRV 228
+ TVL D RL VR + QP R+++D R+ +P F
Sbjct: 196 STASTVLADAARLTVRQSSDAGAEPAALIRPLADGSLRQPLRVILDRQQRLSGNEPLFN- 254
Query: 229 LKGGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+GG + A D P K + ++ + + G++DL ++ L R+IN L EA
Sbjct: 255 -EGGPVLLCYAADAAPRKLAVTRVTVEQLPLALSADGRLDLAQLLTRLAARQINSLWTEA 313
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L +L+ G VDELLLY +P+L+GE + L L + KL F+E+ +GPD+
Sbjct: 314 GAILAGSLLKAGLVDELLLYQAPLLLGEQGRPLAVLGDFQQLAQTPKLAFNEVISLGPDL 373
Query: 347 RILARF 352
R+ AR
Sbjct: 374 RLRARL 379
>gi|395498963|ref|ZP_10430542.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. PAMC 25886]
Length = 378
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 207/365 (56%), Gaps = 25/365 (6%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ +++ G+ G HAE+ AL A G
Sbjct: 16 MARALELARKGLYTTHPNPRVGCVIVRDGQVVGEGWHVRTGEPHAEVHALR---AAGDKA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G+TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI
Sbjct: 73 RGATAYVTLEPCSHHGHTPPCADALVNAGLARVVAAMQDPNPEVAGRGMRRLAQAGIETH 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N GF RM+ G+P+VR+K+A SLD +T++ N SQWIT +R
Sbjct: 133 SGLLENEARALNPGFLKRMEHGLPFVRVKLAMSLDGRTAMANGESQWITGPAARAAVQRL 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 193 RAQASVVLTGADTVLADGARLTVRAAELGLDEETTALAMSRPPLRVLIDGRLRVPLNAPF 252
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + T + G E +V+P G+VDL++ ++ L R +NE+ +
Sbjct: 253 F---KAGPALVITCVTPDNQYPT----GPECLVVPGVDGQVDLRSALVALAARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG L A +G VDE +++++ +G A P L +LK E++ +G D
Sbjct: 306 EAGPSLAGAFAQQGLVDEYVIFVAGKFLGSAARPLLDWPLEKLADAPQLKITEMRAVGDD 365
Query: 346 IRILA 350
R+ A
Sbjct: 366 WRVTA 370
>gi|323497966|ref|ZP_08102975.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
[Vibrio sinaloensis DSM 21326]
gi|323317011|gb|EGA70013.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
[Vibrio sinaloensis DSM 21326]
Length = 368
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 218/365 (59%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+ AK + ++PNP VGCVI + + ++ G+ G HAE+ AL A Q
Sbjct: 12 MSRAIDLAKGGVYTTAPNPNVGCVITRNEEVVGEGFHYRAGEPHAEVHALRMAGEQSV-- 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+ + KVI A DPNP V+G+G+ L AGI V+
Sbjct: 70 -GATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICASQDPNPQVAGRGIKMLRDAGIEVE 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++EA +N GF RM+ G+P+V++K+A+SLD +T+L N SQWITS ++R D W
Sbjct: 129 VGLLEQEALALNPGFIKRMKTGLPYVQLKMAASLDGQTALANGQSQWITSPQARQDVQQW 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RARS AIL+ TV++DN LNVR SI+ + QP R+++D ++ P +
Sbjct: 189 RARSGAILSTSKTVIEDNASLNVRWSELPESIQQRYSQTDLRQPTRVILDRQNKLTPDLK 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIE 286
+ P +R ++ + G EV + N ++DL+A + L ++ IN + +E
Sbjct: 249 LFHS-----------PGERLVVSEHG-EVAMSLNEQQQIDLEATLACLAQQHNINHVWVE 296
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L ++LI E VDEL+LY +P L+G ++ + S+ I L +++++G D
Sbjct: 297 AGATLASSLIREQLVDELILYFAPKLMGSDSRGLLGALGLESMTDVIDLNIKDVRQVGKD 356
Query: 346 IRILA 350
IRI+A
Sbjct: 357 IRIVA 361
>gi|294101991|ref|YP_003553849.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense
DSM 12261]
gi|293616971|gb|ADE57125.1| riboflavin biosynthesis protein RibD [Aminobacterium colombiense
DSM 12261]
Length = 369
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/338 (40%), Positives = 199/338 (58%), Gaps = 6/338 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+SPNP VGCVIVKE I++ GY +S G HAE++AL A G +TVY+ LEPC+
Sbjct: 26 QTSPNPLVGCVIVKEDTIVAEGYHRSYGMPHAEVEALQRA---GDGAKGATVYVNLEPCA 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC L +S + +V+I + DPN +V+GKGV L S + + G+++ E +N
Sbjct: 83 HFGKTPPCAPQLARSKVSRVVIGMVDPNAVVNGKGVEILRSNQLITETGVLEDECKWVNR 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF R++ PW +K AS++D + +L N SQWITS+ESRN +H+ RA I+ G+GT
Sbjct: 143 GFIRRVRDQRPWFTLKSASTIDGQIALPNGESQWITSEESRNKAHLLRAEHDGIMVGVGT 202
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPM--KRKILE 250
VL+D+P L VR P RIV+D+ LR +L+G G+ I K L
Sbjct: 203 VLRDDPSLTVRHT-VGRSPIRIVVDTMLRTPADAAILRGDGAIILAGISAQKMGKHDQLS 261
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
G E+ LP +VDL++ I LG+R +N + +E G L +A I E +D L L+I+P
Sbjct: 262 KAGAEIYYLPEKNNRVDLRSAAIILGERGLNSVLVEGGATLASAFIQEKLIDGLSLFIAP 321
Query: 311 ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
++G+ ++F SLDK I+ + + + G DI I
Sbjct: 322 TIMGQGISLFKEIVVPSLDKLIRFRVLNMSRTGRDIWI 359
>gi|395797717|ref|ZP_10477005.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. Ag1]
gi|421139018|ref|ZP_15599064.1| riboflavin synthase subunit alpha [Pseudomonas fluorescens BBc6R8]
gi|395338085|gb|EJF69938.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. Ag1]
gi|404509741|gb|EKA23665.1| riboflavin synthase subunit alpha [Pseudomonas fluorescens BBc6R8]
Length = 378
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 207/365 (56%), Gaps = 25/365 (6%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ +++ G+ G HAE+ AL A G
Sbjct: 16 MARALELARKGLYTTHPNPRVGCVIVRDGQVVGEGWHVRTGEPHAEVHALR---AAGDKA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G+TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI
Sbjct: 73 RGATAYVTLEPCSHHGHTPPCADALVNAGLARVVAAMQDPNPEVAGRGMRRLAQAGIETH 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N GF RM+ G+P+VR+K+A SLD +T++ N SQWIT +R
Sbjct: 133 SGLLENEARALNPGFLKRMEHGLPFVRVKLAMSLDGRTAMANGESQWITGPAARAAVQRL 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 193 RAQASVVLTGADTVLADGARLTVRAAELGLDEETTALAMSRPPLRVLIDGRLRVPLNAPF 252
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + T + G E +V+P G+VDL++ ++ L R +NE+ +
Sbjct: 253 F---KAGPALVITCVTPDNQYPT----GPECLVVPGVDGQVDLRSALVALAARGVNEVLV 305
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG L A +G VDE +++++ +G A P L +LK E++ +G D
Sbjct: 306 EAGPSLAGAFAQQGLVDEYVIFVAGKFLGSAARPLLDWPLEKLADAPQLKITEMRAVGDD 365
Query: 346 IRILA 350
R+ A
Sbjct: 366 WRVTA 370
>gi|120598057|ref|YP_962631.1| riboflavin biosynthesis protein RibD [Shewanella sp. W3-18-1]
gi|120558150|gb|ABM24077.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Shewanella sp. W3-18-1]
Length = 384
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 150/363 (41%), Positives = 208/363 (57%), Gaps = 20/363 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ +II GY + G HAE+ AL A G
Sbjct: 15 MSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHALRMA---GERA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V G+G+ L AGI V
Sbjct: 72 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIEVD 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+P V +K+A+SLD KT+L N S+WIT ESR D
Sbjct: 132 VGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRDVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----SIKTS------HQPYRIVIDSYLRIDPFFRV 228
R RSCA++TGI T+L D+P LNVR S+K QP R+++DS R+ P
Sbjct: 192 RLRSCALVTGIETILADDPLLNVRYQELGSLKDRVTEAQLLQPLRVILDSRARL-PLSAA 250
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
S I + + L V ++LP G+V L ++ LG+ N + +E
Sbjct: 251 CLAIVSPILLVSTVAYPADFQAQLPSHVSCLLLPAIEGRVSLPELLSYLGQ-SCNHVLVE 309
Query: 287 AGYQLNTALILEGCVDELLLYIS-PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A + EG DEL+LY + IL G N+ LP + ++ L + +KIGPD
Sbjct: 310 AGATLAGAFLAEGLADELVLYQAMKILGGHGRNLLQLPDYQTMAHIPALTLVDERKIGPD 369
Query: 346 IRI 348
R+
Sbjct: 370 TRL 372
>gi|407368392|ref|ZP_11114924.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas
mandelii JR-1]
Length = 377
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 217/365 (59%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVIVRDGQIVGEGWHVRTGEPHAEVHALR---AAGDKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G+TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+++
Sbjct: 72 RGATAYVTLEPCSHHGHTPPCADALVNAGLARVVAAMQDPNPSVAGRGLQRLAQAGIAIE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK-----------TSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL DN RL VR+ + S P R++ID LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTARAMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++ + G VDL+ +++EL R +NE+ +
Sbjct: 252 F---KAGPALV--ATCMAIEEQYAN--GPECLIVAGDDGLVDLRKLLVELAARGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A +G VDE ++I+ +G + P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQQGLVDEFQIFIAGKFLGSSARPLLDWPIAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|398918102|ref|ZP_10658339.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM49]
gi|398171894|gb|EJM59784.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM49]
Length = 377
Score = 252 bits (644), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 138/365 (37%), Positives = 214/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV+ +I+ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVIVQGGQIVGEGWHVRAGEPHAEVHALRAA---GEQA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLESEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL DN RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTALAMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++P G+VDL+ +++EL R +NE+ +
Sbjct: 252 F---KAGPALV--ATCVAVEEQYAN--GPECLIVPGYDGQVDLRQLLVELAARGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQLGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|398948095|ref|ZP_10672575.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM33]
gi|398161103|gb|EJM49346.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM33]
Length = 377
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 215/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV++ +I+ G+ + G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVIVQDGQIVGEGWHERAGEPHAEVHALR---AAGEQA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ E+ ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGESRKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL DN RL VR ++ S P R+++D LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTALAMSRPPLRVLVDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++P G+VDL+ +++EL R +NE+ +
Sbjct: 252 F---KAGPALV--ATCVAVEEQYAN--GPECLIVPGYDGQVDLRQLLVELANRGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQLGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPALKITEIRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|167036452|ref|YP_001664030.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320114877|ref|YP_004185036.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii
subsp. finnii Ako-1]
gi|166855286|gb|ABY93694.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319927968|gb|ADV78653.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter brockii
subsp. finnii Ako-1]
Length = 360
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 141/306 (46%), Positives = 201/306 (65%), Gaps = 9/306 (2%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+++PNP VG VIVK +II GY + GG HAE++AL NA DV ST+++TLEPCS
Sbjct: 18 HTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVE---DVKGSTMFVTLEPCS 74
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC E +IKSGIK+V IA+ DPNP VSG G+ +L AGI V G+M+K+A ++N
Sbjct: 75 HYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVGIMEKKARKLNE 134
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
F + P+V +K A S+D K + YN +S+WIT+++SR +H R R AI+ G+ T
Sbjct: 135 IFVKYITTKFPFVIVKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNT 194
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVL---KGGGSCIFTATDLPMK-RKI 248
V+KDNP L R ++ P RI++DS RI PF + K + I T +P RK
Sbjct: 195 VIKDNPMLTTR-LEGYKSPVRIIVDSRGRI-PFDSNVIRDKTAKTIIATTELMPNNVRKK 252
Query: 249 LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYI 308
LED+ EVI+L N+ GKV L+ ++I+LG+R I+ + IE G LN + + EG VD+++ +I
Sbjct: 253 LEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSALKEGIVDKVMFFI 312
Query: 309 SPILIG 314
SP +IG
Sbjct: 313 SPRIIG 318
>gi|330812014|ref|YP_004356476.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pseudomonas
brassicacearum subsp. brassicacearum NFM421]
gi|327380122|gb|AEA71472.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase; riboflavin
biosynthesis protein RibD [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 377
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 132/362 (36%), Positives = 213/362 (58%), Gaps = 19/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 15 MARALELARRGHYTTHPNPRVGCVIVRDGQIVGEGWHIRAGEPHAEVHALRAA---GEQA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM++G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNEGFLKRMEQGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK-----------TSHQPYRIVIDSYLRIDPFFRV 228
RA++ +LTG TVL DN RL VR+ + S P R+++D LR+
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTASVMSRPPLRVLVDGRLRVPLDAAF 251
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
K G + + AT + ++ + G E +++ + G+VDL +++EL R +NE+ +EAG
Sbjct: 252 FKAGPALV--ATCMAVEEQYAN--GPECMIVAGDDGQVDLHRLLVELAGRGVNEVLVEAG 307
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A +G VDE ++I+ +G + P + +LK EI+ +G D R+
Sbjct: 308 PRLAGAFARQGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPQLKITEIRAVGDDWRV 367
Query: 349 LA 350
+A
Sbjct: 368 IA 369
>gi|333892348|ref|YP_004466223.1| riboflavin biosynthesis protein RibD [Alteromonas sp. SN2]
gi|332992366|gb|AEF02421.1| riboflavin biosynthesis protein RibD [Alteromonas sp. SN2]
Length = 404
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 145/351 (41%), Positives = 204/351 (58%), Gaps = 19/351 (5%)
Query: 9 KLSINSSPNPRVGCVIVKEKR-IISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
K +SPNPRVGCVIV I G+ G HAEI AL A G +T Y+T
Sbjct: 51 KGQFTTSPNPRVGCVIVNNNNDSIGQGFHVQAGTPHAEIHALREA---GKKAKGATAYVT 107
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS++G TPPC EALIK+ + +V+IA+ DPNP VSG G+ L AGI V +M E+
Sbjct: 108 LEPCSHYGRTPPCAEALIKAQVSRVVIAMTDPNPNVSGNGIRMLQDAGIEVSSDIMSAES 167
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF RM G P+VR+K+ S+D K +L N +SQWIT E+R D +RA+SCA+L
Sbjct: 168 AALNPGFIKRMLTGKPYVRVKLGISVDGKIALQNGNSQWITGPEARRDVQHYRAQSCAVL 227
Query: 188 TGIGTVLKDNPRLNVR--SIKTSH-------QPYRIVIDSYLRIDPFFRVLKGGGSCIFT 238
TG GTV DNP L VR K +H QP RI+++S + +R + G
Sbjct: 228 TGSGTVKADNPSLLVRPDEAKFAHYPLEAIRQPVRIIVNSADDLSRDYRCMNDGHPTFVV 287
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
+T ++ H + N GKVD+ ++++LG + NE+ +EAG L AL++
Sbjct: 288 ST---QNSADTDNRQHLTVDAMN--GKVDISKLMLQLGDMQFNEVWVEAGPGLAGALLIA 342
Query: 299 GCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDEL+ Y +P L+G+ +M +LP L++ I+L E ++IG DI++
Sbjct: 343 GEVDELICYQAPKLLGDKGVSMVSLPTFTELNQAIELSLIESRQIGNDIKL 393
>gi|393762569|ref|ZP_10351196.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Alishewanella agri BL06]
gi|392606804|gb|EIW89688.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Alishewanella agri BL06]
Length = 382
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 216/366 (59%), Gaps = 26/366 (7%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
A+ + PNP VG ++VK+ +++ G+ + GG HAE+ AL A G +T Y+T
Sbjct: 19 AQGRFTTDPNPNVGALVVKDGQVLGEGFHQQAGGPHAEVFALQQA---GSAARGATCYVT 75
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPC+++G TPPC EAL+K+G+ +V+IA+ DPNPLV+GKGVA L AGISV GL+ +EA
Sbjct: 76 LEPCAHYGRTPPCAEALVKAGVARVVIAMLDPNPLVAGKGVAILQQAGISVAHGLLTEEA 135
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF SRM+R P++ +K+A+SLD +T+L N SQW+TS +R D +WRA+ AIL
Sbjct: 136 RALNPGFLSRMERQRPYLYLKLAASLDGRTALANGQSQWLTSDVARADVQLWRAQVSAIL 195
Query: 188 TGIGTVLKDNPRLNVRSIKTS----------------HQPYRIVIDSYLRI---DPFFRV 228
+ TVL D RL VR + QP R+++D R+ +P F
Sbjct: 196 STASTVLADAARLTVRQSSDAGAEPAALIRPLADGSLRQPLRVILDRQQRLTGSEPLFN- 254
Query: 229 LKGGGSCI-FTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+GG + F A P K + + ++ + + G++DL ++ L R+IN L EA
Sbjct: 255 -EGGPVLLCFAADAAPRKLAVTKVTVEQLPLALSADGQLDLVQLLTRLAARQINSLWTEA 313
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L +L+ G VDELLLY +P+L+GE + L L + KL F+E+ +GPD+
Sbjct: 314 GAILAGSLLKAGLVDELLLYQAPLLLGEQGRPLAVLGDFQQLAQTPKLAFNEVISLGPDL 373
Query: 347 RILARF 352
R+ AR
Sbjct: 374 RLRARL 379
>gi|386314619|ref|YP_006010784.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase, RibD [Shewanella putrefaciens 200]
gi|319427244|gb|ADV55318.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase, RibD [Shewanella putrefaciens 200]
Length = 384
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 149/363 (41%), Positives = 208/363 (57%), Gaps = 20/363 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+Q A+ + PNP VGCVIVK+ +II GY + G HAE+ AL A G
Sbjct: 15 MSRAIQLARKGFYTTRPNPSVGCVIVKDNQIIGEGYHQKAGEPHAEVHALRMA---GERA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC ALI G+K+V++A+ DPNP V G+G+ L AGI V
Sbjct: 72 RGATAYVTLEPCSHYGRTPPCALALINIGVKRVVVAVEDPNPQVGGRGIQMLRDAGIEVD 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + EAY +N+GF RM+ G+P V +K+A+SLD KT+L N S+WIT ESR D
Sbjct: 132 VGLHRDEAYALNLGFMKRMESGLPRVTVKLAASLDGKTALSNGVSKWITGPESRRDVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----SIKTS------HQPYRIVIDSYLRIDPFFRV 228
R RSCA++TGI T+L D+P LNVR S+K QP R+++DS R+ P
Sbjct: 192 RLRSCALVTGIETILADDPSLNVRYQELGSLKDRVTEAQLLQPLRVILDSRARL-PLSAA 250
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHIE 286
S I + + L V ++LP G+V L ++ LG+ N + +E
Sbjct: 251 CLAIVSPILLVSTVAYPADFQAQLPSHVSCLLLPAIEGRVSLPELLSYLGQ-SCNHVLVE 309
Query: 287 AGYQLNTALILEGCVDELLLYIS-PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L A + EG DEL+LY + IL G N+ LP + ++ L + +K+GPD
Sbjct: 310 AGATLAGAFLAEGLADELVLYQAMKILGGHGRNLLQLPDYQTMAHIPALTLVDERKLGPD 369
Query: 346 IRI 348
R+
Sbjct: 370 TRL 372
>gi|392553134|ref|ZP_10300271.1| riboflavin biosynthesis protein [Pseudoalteromonas spongiae
UST010723-006]
Length = 373
Score = 252 bits (643), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 216/356 (60%), Gaps = 15/356 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK+ +II G+ GG HAE+ AL A G +
Sbjct: 14 MARAIELAKRGRFTTTPNPNVGCVLVKDNQIIGEGFHIQAGGPHAEVHALKMA---GDNA 70
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+G+ +V+ A+ DPNP V+G+G+ L AGI
Sbjct: 71 KGATAYVTLEPCSHYGRTPPCAEGLIKAGVSRVVAAMVDPNPEVAGRGLKMLEDAGIETD 130
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA +N+GF RM+ +P+VR K+A+SLD KT+L N S+WITS ESR
Sbjct: 131 FGLLNDEAEALNLGFLKRMRTNLPFVRCKLAASLDGKTALENGESKWITSSESRRAVQDL 190
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--------SIKTSHQPYRIVIDSYLRIDPFFRVLKG 231
RA SCA+L+G TV+ DN +LNVR + ++ QP R++IDS R+ P + +
Sbjct: 191 RAESCAVLSGADTVIVDNAKLNVRPDELTDTDAKHSTRQPIRVIIDSQNRLTPDLALFQQ 250
Query: 232 GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQL 291
I T L K +V+V NN KVDL+A+++ L +R +N + +EAG L
Sbjct: 251 PSKIIIARTTLD-KSHTWPHFVEQVVVEQNN-SKVDLRALLLLLAERGVNLVLLEAGATL 308
Query: 292 NTALILEGCVDELLLYISPILIGEAY-NMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ + VDEL+L+++P L+G + ++ LP ++ + +L+ + ++++G DI
Sbjct: 309 AGKMFEQQLVDELVLFMAPKLMGHSSKSLINLPTFTTMSQVPELEINTLKQVGQDI 364
>gi|146308871|ref|YP_001189336.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas mendocina ymp]
gi|145577072|gb|ABP86604.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pseudomonas
mendocina ymp]
Length = 371
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 140/366 (38%), Positives = 218/366 (59%), Gaps = 24/366 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ I+ G+ G HAE+ AL A G
Sbjct: 9 MARALRLARKGLYSTHPNPRVGCVIVRDGEIVGEGWHARAGEPHAEVHALRQA---GERA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L +AGI V
Sbjct: 66 RGATAYVTLEPCSHHGRTPPCADALVAAGVGRVVAAMQDPNPQVAGRGLLRLANAGIEVL 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N+GF RM+ G+P+VR+K A SLD +T++ + SQWIT +R +
Sbjct: 126 SGVLEAEARALNVGFIKRMESGLPFVRVKSAMSLDGRTAMASGESQWITGPAARAEVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS-----------IKTSHQPYRIVIDSYLRI---DPF 225
RA+S +L+G TVL D+ RL VR + S P R++ID LR+ F
Sbjct: 186 RAQSSVVLSGADTVLADDARLTVRPDELGLGAEATFMAASRPPLRVLIDGRLRVPLSKAF 245
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+V G + + T + + L D HE++ +P + G VDL+ ++ EL R +NE+ +
Sbjct: 246 FQV---GPALVATCAAAAARDRYLAD-DHELLAVPGSNGHVDLRKLLQELAGRGVNEVLV 301
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG +L A G VDE ++++P L+G A +F LP + + + +L+ +I+ +G
Sbjct: 302 EAGPRLAGAFARAGLVDEYRIFVAPKLLGSSARPLFELPLN-RMAEAPELQIVDIRAVGD 360
Query: 345 DIRILA 350
D +I A
Sbjct: 361 DWQITA 366
>gi|401762510|ref|YP_006577517.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter cloacae subsp. cloacae ENHKU01]
gi|400174044|gb|AFP68893.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Enterobacter cloacae subsp. cloacae ENHKU01]
Length = 367
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/348 (40%), Positives = 208/348 (59%), Gaps = 19/348 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 19 FTTHPNPNVGCVIVKDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVTLEPC 75
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L GI V GLM ++A IN
Sbjct: 76 SHHGRTPPCCDALIAAGVSRVVASMQDPNPQVAGRGLYRLQQEGIDVSHGLMMQDAEAIN 135
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ N SQWITS ++R D RA+S AILT
Sbjct: 136 KGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSPQARRDVQRLRAQSHAILTSSE 195
Query: 192 TVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P + VR + + QP RIVIDS RI R+++ G
Sbjct: 196 TVLADDPAMTVRWDELNADTQALYPQENLRQPLRIVIDSQNRITAEHRIVQQPGETWIAR 255
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
T R+ E G I++P + G++DL +++ LGK+++N + +EAG L AL+ G
Sbjct: 256 TKEDT-REWPE--GVRSIMVPEHNGRLDLVVLMMLLGKQQVNSIWVEAGPTLAGALLQAG 312
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
VDEL++Y++P L+G +A +F LP L +L F EI+ +GPD+
Sbjct: 313 LVDELIVYVAPKLLGHDARGLFVLPGLEKLADAPQLTFSEIRSVGPDV 360
>gi|288818291|ref|YP_003432639.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6]
gi|384129051|ref|YP_005511664.1| riboflavin biosynthesis protein RibD [Hydrogenobacter thermophilus
TK-6]
gi|288787691|dbj|BAI69438.1| riboflavin biosynthesis protein [Hydrogenobacter thermophilus TK-6]
gi|308751888|gb|ADO45371.1| riboflavin biosynthesis protein RibD [Hydrogenobacter thermophilus
TK-6]
Length = 361
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/313 (43%), Positives = 201/313 (64%), Gaps = 6/313 (1%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AKL + PNP VGCVIVK+ +II+ GY + G HAE AL A Q
Sbjct: 10 MRRALELAKLRKGLTHPNPTVGCVIVKDGKIIAEGYHEKVGMPHAEAVALEKAGTQAE-- 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST+Y+TLEPC+++G TPPCT+A+I++ +K+V+IA DPNPLVSG+GV +L AGI V
Sbjct: 68 -GSTLYVTLEPCTHYGRTPPCTDAIIRAKVKRVVIATLDPNPLVSGRGVQKLRDAGIDVC 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+N FF+ + + P++ +K+A S+D + + + SQWIT++ESR +H
Sbjct: 127 VGVLEDEARELNEDFFTYITQKRPYITLKLAQSIDGRIATKHGESQWITNQESRTFAHRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVL--KGGGSCIF 237
RA++ A+L GI TVL+D+P L VR I QP R+V+D LRI +++ K + I
Sbjct: 187 RAQATAVLVGINTVLRDDPSLTVRHIPWESQPIRVVLDPNLRIPITSKLVREKTAKTLII 246
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
TA++ K KILED G +V++ P GK+ L+ V+ EL +I L +E G Q T+ I
Sbjct: 247 TASENREKMKILEDEGIKVLLAPAEEGKLILREVLRELYFMEIMHLLVEGGAQTITSFIK 306
Query: 298 EGCVDELLLYISP 310
E D L ++++P
Sbjct: 307 EDLYDRLFIFLAP 319
>gi|398999026|ref|ZP_10701779.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM18]
gi|398132645|gb|EJM21907.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM18]
Length = 377
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 215/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCV+V++ +I+ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVVVRDGQIVGEGWHVRAGEPHAEVHALRAA---GDKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVKAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNEGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGTAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADYARLTVRADELGLDPEQTALAMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++ + G+VDL+ +++EL R +NE+ +
Sbjct: 252 F---KAGPALV--ATCMAIEEQYAN--GPECLIVAGDDGQVDLRKLLVELAARGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A +G VDE ++I+ +G P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQQGLVDEFQIFIAGKFLGSTARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|85058629|ref|YP_454331.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Sodalis glossinidius str. 'morsitans']
gi|84779149|dbj|BAE73926.1| riboflavin biosynthesis protein RibD [Sodalis glossinidius str.
'morsitans']
Length = 375
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 145/357 (40%), Positives = 205/357 (57%), Gaps = 29/357 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++PNP VGCVIV++ RI+ GY + G HAE+ AL A G +T Y+TLEPC
Sbjct: 20 FTTAPNPNVGCVIVRDGRIVGEGYHQRAGYAHAEVHALRQA---GNAARCATAYVTLEPC 76
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G +L AGI V+ GLM EA +N
Sbjct: 77 SHHGRTPPCADALIDAGVARVVAAMPDPNPQVAGRGFYRLQQAGIEVRHGLMLPEAEAVN 136
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G PWVR+K+A+SLD +T++ + SQWITS E+R D WRA S AIL+
Sbjct: 137 PGFLKRMRTGFPWVRLKLAASLDGRTAMASGESQWITSTEARRDVQRWRAESDAILSTAT 196
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCI--- 236
TVL D+P L VR QP R++ID + P V +G G
Sbjct: 197 TVLADDPALTVRWASLPEDVQALYPEERLRQPVRVIIDRANSVTPSHWVAQGVGLTWLAR 256
Query: 237 FTATDLPMKRKILEDLGHEVIVLP----NNLGKVDLQAVIIELGKRKINELHIEAGYQLN 292
DL + E ++LP N +DL A++++LG+R+IN L +EAG L
Sbjct: 257 LAPDDLTWPSSV------EQLLLPAGEGANAAHLDLVALMMQLGRRQINSLWVEAGAGLA 310
Query: 293 TALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
AL+ G VDEL+LY +P L+G +A + LP L +++++GPD+R+
Sbjct: 311 GALLGAGLVDELILYQAPKLLGADARPLCLLPGLERLGAAPGFTLLDVRQVGPDLRL 367
>gi|403050685|ref|ZP_10905169.1| ribD [Acinetobacter bereziniae LMG 1003]
Length = 370
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/357 (38%), Positives = 217/357 (60%), Gaps = 25/357 (7%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AKL S+ PNP VGCVIVK+ +I G+ G HAE+ A+ A G
Sbjct: 21 MQKAIELAKLGQYSTRPNPNVGCVIVKDGVLIGEGFHPQAGQPHAEVFAMRQA---GASA 77
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC + L+++G+ KVI+A DPNPLV+GKGV L AGI V+
Sbjct: 78 KGATAYVTLEPCAHYGRTPPCAKGLVEAGVAKVIVACADPNPLVAGKGVEILRQAGIVVE 137
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ +++A ++N+GF M G+P+VR+K+ASSLD +T++ + S+WIT ESR D W
Sbjct: 138 TGVCEQQATQLNLGFLKAMATGLPYVRLKVASSLDGRTAMASGESKWITGAESRQDVQHW 197
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH-----QPYRIVIDSYLRIDPFFRVLKGGGS 234
RA S A++TGI T+L D+P+LNVRS+ QP R+++D R+ +VLK +
Sbjct: 198 RAISGAVITGIETILADDPQLNVRSLANVELEKVVQPKRVILDRKGRLPLTAQVLKHPET 257
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRK---INELHIEAGYQL 291
+ P +R++ E LG + ++D+Q++ LG K I ++ +EAG L
Sbjct: 258 VMVMG---PFRRELAE-LG---------VVQLDVQSLKDLLGTLKDFQIYDVLVEAGATL 304
Query: 292 NTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+TA + E VDEL+ Y++P +G++ ++ ++++ ++ + G DIR+
Sbjct: 305 STAFLQEKLVDELISYVAPTFLGQSARPMFNAEFETMAQQLRFMLKDVHQFGDDIRL 361
>gi|307129900|ref|YP_003881916.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Dickeya dadantii 3937]
gi|306527429|gb|ADM97359.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Dickeya dadantii 3937]
Length = 370
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 141/364 (38%), Positives = 220/364 (60%), Gaps = 24/364 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ +SPNP VGCVIV++ I+ GY + G HAE+ AL A G
Sbjct: 10 MARALELARRGRFTTSPNPNVGCVIVRDDEIVGEGYHQKAGEPHAEVHALRMA---GDKA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI V+
Sbjct: 67 RGATAYVTLEPCSHHGRTPPCADALLAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIEVR 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
++ ++A +IN GF RM+ G P+V++K+ +SLD +T++ + SQWITS++SR D +
Sbjct: 127 HSVLMEQAEKINRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSQQSRQDVQRF 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP R+++DS R+ P R
Sbjct: 187 RAQSSAILSSSATVLADDPSLTVRWSELDADTQRFYPESAVRQPVRVIVDSQSRVTPQHR 246
Query: 228 VLKGGGSCIFTATDLPMKRKILEDL--GHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
++ G T L R+ + G E + +P + G +DL A+++ LGKR+IN + +
Sbjct: 247 LISQPGQ-----TWLARSRQDGQPWPDGVEQLDMPLHGGGIDLVALMMTLGKRQINTVWV 301
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYN-MFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG +L AL+ G VDEL++Y++P L+G+A + LP L + ++ ++GP
Sbjct: 302 EAGPRLAGALLQAGVVDELIVYLAPKLLGDAARPLCVLPGLEQLSQAPAFAMTDVCQVGP 361
Query: 345 DIRI 348
D+R+
Sbjct: 362 DLRL 365
>gi|398865864|ref|ZP_10621373.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM78]
gi|398242313|gb|EJN27932.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM78]
Length = 377
Score = 251 bits (642), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 211/365 (57%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV++ +I+ G+ + G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVIVRDGQIVGEGWHERAGEPHAEVHALR---AAGELA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL DN RL VR ++ S P R+++D LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTALVMSRPPLRVLVDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + T + + G E +++P G+VDL+ +++EL R +NEL +
Sbjct: 252 F---KAGPALVATCVAVEEQYAN----GPECLIVPGYDGQVDLRQLLVELANRGVNELLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQLGLVDEFQIFIAGKFLGSLARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R+ A
Sbjct: 365 WRVTA 369
>gi|336451476|ref|ZP_08621913.1| riboflavin biosynthesis protein RibD [Idiomarina sp. A28L]
gi|336281289|gb|EGN74569.1| riboflavin biosynthesis protein RibD [Idiomarina sp. A28L]
Length = 383
Score = 251 bits (641), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 142/370 (38%), Positives = 215/370 (58%), Gaps = 31/370 (8%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIV-----KEKRIISCGYTKSPGGNHAEIDALLNAAA 54
M AL+ A+ + PNP VGCVIV K I+ G+ G HAE++AL A
Sbjct: 14 MERALELAAQGRFTTHPNPNVGCVIVDFSAEKNGEIVGEGFHLKAGEAHAEVNALAEA-- 71
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
G +T YITLEPC++ G TPPC +ALIK+ + +V++A+ DP P V+G GV +L A
Sbjct: 72 -GDRAKGATAYITLEPCNHTGRTPPCVDALIKADVARVVVAMEDPFPKVAGAGVKRLKKA 130
Query: 115 GISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRN 174
GI V+ GL++KEAY ++ GFF++ + P+V++K+A+SLD +T+L N S+WIT +++R
Sbjct: 131 GIKVEMGLLEKEAYAVSRGFFTQQKLKRPFVQLKMAASLDGRTALANGKSKWITERDARC 190
Query: 175 DSHIWRARSCAILTGIGTVLKDNPRLNVRS---------IKTSHQPYRIVIDSYLRIDPF 225
D + RA++ AILTG GT+L D+P LNVR I QP R++ID + P
Sbjct: 191 DVQVGRAQAGAILTGAGTILADDPALNVRHTEFPNGVEYIGEVRQPVRVIIDHRSEVQPS 250
Query: 226 FRVLKGGGSCIFTAT-----DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKI 280
+V K GG T +LP E+I+ G+VDL A++ + KR I
Sbjct: 251 AQVFKDGGPVWLIRTKASGMELPAN-------AEEIIMDTGVTGRVDLTALLQLIAKRDI 303
Query: 281 NELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEI 339
+ + +E G +L A++ VDEL++Y +P L+G+ MF L S+D +F EI
Sbjct: 304 HTVWVEGGARLAGAMLTAELVDELIVYTAPKLMGDNGVGMFHLGQITSMDNVPVWEFSEI 363
Query: 340 QKIGPDIRIL 349
++G D++++
Sbjct: 364 TQVGVDVKMV 373
>gi|398942433|ref|ZP_10670275.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM41(2012)]
gi|398160613|gb|EJM48878.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM41(2012)]
Length = 377
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 137/365 (37%), Positives = 214/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVIVRDGQIVGEGWHVRTGEPHAEVHALR---AAGDKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVHAGVARVVAAMQDPNPSVAGRGMQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNEGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL DN RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDPEQTALAMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++ G VDL+ +++EL R +NE+ +
Sbjct: 252 F---KAGPALV--ATCMAIEEQYAN--GPECLIVAGEDGLVDLRKLLVELAARGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A +G VDE ++I+ +G + P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQQGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|70728414|ref|YP_258163.1| riboflavin biosynthesis protein RibD [Pseudomonas protegens Pf-5]
gi|68342713|gb|AAY90319.1| riboflavin biosynthesis protein RibD [Pseudomonas protegens Pf-5]
Length = 368
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 139/356 (39%), Positives = 210/356 (58%), Gaps = 12/356 (3%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+ +S+ PNPRVGCVI +++ G+ + GG HAE+ AL A G
Sbjct: 12 MQHALSLAERGSHSTWPNPRVGCVIAHGSQVVGEGWHRRAGGPHAEVFALRQA---GGLA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+T+EPCS+ G T C +ALI SG+ V++A DP V+G+G+AQL +AGI V+
Sbjct: 69 RGATAYVTMEPCSHVGRTGACHQALIDSGVHSVVVAHQDPFEQVNGQGIAQLRNAGIEVR 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ A E+N GF S ++R PWV++K+ SLD +T+L N S+WITS +R D W
Sbjct: 129 VGLLESAAQELNRGFLSTVRRQRPWVQLKMGMSLDGRTALDNGRSKWITSTRARADVQYW 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RARS AILTG GTVL D+P L VR + + P R+V+DS R+ RV +
Sbjct: 189 RARSSAILTGSGTVLADDPLLTVRQLSSPEALAPVRVVLDSQGRVPATARVFNDQAPSLH 248
Query: 238 TA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
+ P+ E +V+ LP + + L+ ++ L +R +++L +EAG L L+
Sbjct: 249 VVHRECPLASSDSE----QVMALPGDDQGLHLEQLLHNLSQRGLHDLLVEAGPTLAGNLL 304
Query: 297 LEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDELLLY++P L+G+ A + LP L++ + +++ ++GPD+R+ R
Sbjct: 305 KAHLVDELLLYVAPRLLGDLARPLVHLPCFDRLEEALDFALYDVSQLGPDLRLRLR 360
>gi|429331890|ref|ZP_19212630.1| riboflavin biosynthesis protein RibD [Pseudomonas putida CSV86]
gi|428763401|gb|EKX85576.1| riboflavin biosynthesis protein RibD [Pseudomonas putida CSV86]
Length = 376
Score = 251 bits (641), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 206/365 (56%), Gaps = 24/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCVIV++ RI+ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYSTHPNPRVGCVIVRDGRIVGEGWHVRAGEPHAEVHALREA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+ +G+ +V+ A+ DPNP V+G G+ +L AGI V
Sbjct: 70 RGACAYVTLEPCSHHGRTPPCAEALVNAGVSRVVAAMQDPNPQVAGNGLKRLADAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ +P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 130 SGVLEAEARALNPGFLKRMEHRLPFVRVKLAMSLDGRTAMASGESQWITGPAARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LT +V+ DN R+ VR ++ + P R++ID LR+ PF
Sbjct: 190 RARSSVVLTSAASVIADNARMTVRGDELGLDPETTALALARPPLRVLIDGRLRLPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ G + A D P GH+++ +P G+VDL+ +++EL +R INE+ +
Sbjct: 250 FQA--GAALVVTAAEDDPRYAAA----GHQLLRIPGENGQVDLRQLLVELARRDINEVLV 303
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG L A G +DE L+I+ +G P + + LK E++ +G D
Sbjct: 304 EAGPGLAGAFARLGLIDEYQLFIAGRFLGSTARPLLDWPLARMSEAPALKIIEMRAVGDD 363
Query: 346 IRILA 350
R+ A
Sbjct: 364 WRVTA 368
>gi|335420719|ref|ZP_08551755.1| riboflavin biosynthesis protein RibD [Salinisphaera shabanensis
E1L3A]
gi|334894213|gb|EGM32415.1| riboflavin biosynthesis protein RibD [Salinisphaera shabanensis
E1L3A]
Length = 375
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 130/341 (38%), Positives = 207/341 (60%), Gaps = 2/341 (0%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNPRVGCVIV+ + +I G+ + G NHAE AL + +G +T Y+TLEPCS
Sbjct: 28 TTRPNPRVGCVIVRGETVIGEGWHERAGENHAEKAALADVERRGESARGTTAYVTLEPCS 87
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G T PC +ALI +G+ +V++ DPNP V+G+G+A+L AGI V ++ +N
Sbjct: 88 HTGRTAPCVDALIDAGVARVVVGATDPNPQVNGRGIARLREAGIEVIADVVADRCRALNP 147
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF RM+ P VR+K+A +LD +T+ + +SQWIT + +R+D H RA S A++ G GT
Sbjct: 148 GFEKRMRAKRPRVRVKLAMTLDGRTAAADGTSQWITGEVARDDVHRLRAESGAVMVGRGT 207
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLPMKRKILED 251
+ D+P LNVR QP +V+D+++ I P RV + I+ A+ + LE
Sbjct: 208 LKADDPSLNVRLKGDWPQPMPVVLDTHVAITPDARVFETSPRVLIYCASTEGARIAALEQ 267
Query: 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPI 311
G +++++ + ++DL+AV+ +LGKR+IN++ +E+G QL AL G VDE ++Y++
Sbjct: 268 AGADIVMVGLSDDRLDLRAVLADLGKREINDVLVESGPQLAGALADAGLVDEYVIYMAAK 327
Query: 312 LIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
L+G+A + +P +L +L ++ +G D RI AR
Sbjct: 328 LLGDAGRGLLHMPQIATLADAPQLVIDSVEPVGRDWRITAR 368
>gi|398842987|ref|ZP_10600152.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM102]
gi|398104655|gb|EJL94786.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM102]
Length = 377
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 213/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCV+V++ +I+ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVVVRDGQIVGEGWHVRTGEPHAEVHALRGA---GDKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA + +LTG TVL DN RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAEASVVLTGADTVLADNARLTVRADELGLDAEQTALAMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++P + G+VDL +++EL R +N++ +
Sbjct: 252 F---KAGPALV--ATCVAVEEQYAN--GPECLIVPGDDGQVDLHQLLVELANRGVNDVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQIGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R+ A
Sbjct: 365 WRVTA 369
>gi|50083525|ref|YP_045035.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Acinetobacter sp. ADP1]
gi|49529501|emb|CAG67213.1| bifunctional protein [Includes:
diaminohydroxyphosphoribosylaminopyrimidine deaminase
(Riboflavin-specific deaminase);
5-amino-6-(5-phosphoribosylamino)uracil reductase (HTP
reductase) ] [Acinetobacter sp. ADP1]
Length = 362
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 145/360 (40%), Positives = 222/360 (61%), Gaps = 29/360 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL AK + + PNP VGCVIVK++ I+ G T GG HAE+ AL A G
Sbjct: 11 MSQALALAKTAQFRTRPNPAVGCVIVKDQHIVGRGSTAPVGGPHAEVFALREA---GVQA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
N+T Y+TLEPCS++G TPPC ALI++G+ +V+IA DPNPLV+GKG L AGI+ +
Sbjct: 68 QNATAYVTLEPCSHYGRTPPCANALIEAGVSRVVIATLDPNPLVAGKGQTMLNQAGITTQ 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++++A E+N GF M G+P+VR+K+ASSLD +T++ + S+WIT ++R D W
Sbjct: 128 VGVLEEQAQELNRGFLKVMAGGLPYVRLKVASSLDGRTAMASGESKWITGVDARLDVQYW 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------QPYRIVIDSYLRIDPFFRVLKGGG 233
RARS AI+TG+ TVL D+ +LNVR++ QP RI++D R+ ++L+
Sbjct: 188 RARSGAIITGVDTVLADDCQLNVRALPDVDDLSEIVQPKRIILDRQGRLPLTAKLLQHPE 247
Query: 234 SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLN 292
+ + P +++ L DLG V+ P + LQ ++ + K I ++ IEAG L+
Sbjct: 248 TVVVMG---PFRQE-LADLG--VVQFP----VLPLQQLLEHIAKEHHIYDVMIEAGATLS 297
Query: 293 TALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDK---KIKLKFHEIQKIGPDIRI 348
TA + E VDE++ Y++P L+G A MF + LDK +++ + ++ ++G DIR+
Sbjct: 298 TAFLQEDLVDEVISYVAPTLLGCSARAMF----NAELDKMAQQLRFELIDLTQLGQDIRL 353
>gi|398977344|ref|ZP_10687061.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM25]
gi|398138088|gb|EJM27118.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM25]
Length = 377
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 210/365 (57%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV++ +I+ G+ + G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVIVRDGQIVGEGWHERAGEPHAEVHALR---AAGELA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVGRVVAAMRDPNPQVAGRGLQRLADAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEAEARKLNQGFLKRMEHGSPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RA++ +LTG TVL D RL VR ++ S P R++ID LR+
Sbjct: 192 RAQASVVLTGADTVLADGARLTVRGDELGLDAEQTALALSRPPLRVLIDGRLRVPLDASF 251
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGH--EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
K G + + T I E H E +++P + G+VDL ++IEL R +NE+ +E
Sbjct: 252 FKAGPALVATCV------AIEEQYAHGPECLIVPGDDGQVDLHQLLIELANRGVNEVLVE 305
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG +L A G VDE +++I+ +G A + P Y D +LK EI+ +G D
Sbjct: 306 AGPRLAGAFAQLGLVDEFVIFIAGKFLGSTARPLLDWPLAYMKDAP-ELKITEIRAVGDD 364
Query: 346 IRILA 350
R+ A
Sbjct: 365 WRVTA 369
>gi|238760662|ref|ZP_04621787.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia aldovae
ATCC 35236]
gi|238701127|gb|EEP93719.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Yersinia aldovae
ATCC 35236]
Length = 369
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 217/365 (59%), Gaps = 26/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L +SPNP VGCV+V+E I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTSPNPNVGCVLVREGEIVGEGYHLRAGEPHAEVHALRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ L AGI+V
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALVAAGVVRVVAAMQDPNPQVAGRGLYLLKQAGIAVD 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M EA +N GF RM+ G P++++K+A+SLD +T++ + SQWITS ++R D +
Sbjct: 125 HGVMLAEAEAVNRGFLKRMRTGFPYLQLKMAASLDGRTAMASGESQWITSPQARQDVQRF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP RI++DS+ R+ P +
Sbjct: 185 RAQSAAILSTSATVLADDPSLTVRWQELDAQTQALYPQDRLRQPVRIILDSHNRVTPEHK 244
Query: 228 VLKGGGSCIFTATDL---PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
V++ G C D P + E ++LP + VDL ++++L +R+IN +
Sbjct: 245 VIQQDGPCWLARVDADEQPWPDNV------EQLLLPRHNNGVDLVLLMMQLARRQINSIW 298
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+EAG QL AL+ G VDEL+LYI+P L+G +A + L L + F +++++G
Sbjct: 299 VEAGPQLAGALLQAGVVDELILYIAPKLLGSDARGLCHLAGLTQLRDAPEFVFSDVRQVG 358
Query: 344 PDIRI 348
PD+R+
Sbjct: 359 PDLRL 363
>gi|392407158|ref|YP_006443766.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Anaerobaculum mobile DSM 13181]
gi|390620294|gb|AFM21441.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Anaerobaculum mobile DSM 13181]
Length = 362
Score = 251 bits (640), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 128/351 (36%), Positives = 216/351 (61%), Gaps = 10/351 (2%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
M L+L Q + + ++PNPRVGCV+VK+ I+ G+ + PGG HAE++AL A G
Sbjct: 15 MALSLAQ-RGTGTTTPNPRVGCVVVKDGTIVGMGFHRYPGGPHAEVEALSEA---GEMAE 70
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
+T+Y+ LEPC+++G TPPC +++SGIK+ IA DP P V GKG+ L S G+ V
Sbjct: 71 GATLYVNLEPCTHYGRTPPCCPLIVQSGIKRAFIATKDPFPKVQGKGIEYLSSRGLDVTV 130
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
G+++KEA +N GFF + G PW+ +K ASSLD +L + SS+W+T + S +H+ R
Sbjct: 131 GILEKEARWLNRGFFKAYEEGRPWITLKAASSLDGNVALEDGSSRWVTGQSSLKRAHLLR 190
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT 240
A + AIL GIGTVL+D+P+L VR + P +IV+D+ LRI ++ G + I T+
Sbjct: 191 AETDAILVGIGTVLRDDPQLTVR-MTDGRNPLKIVLDTNLRIPFDAKLFNEGMTLIVTSK 249
Query: 241 DLPMKRKILEDL---GHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
D P ++ +E+L G V+ +P + GK+D++ ++ +L +++ L +E G ++ ++
Sbjct: 250 DSPSQK--VEELISRGVSVLQVPTDSGKLDIKELVFKLPSMEVHYLLVEGGPKILSSFFR 307
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G D++ L+ +P ++G+ MF+ + ++K ++++G D+ +
Sbjct: 308 AGLCDDMALFYAPKVMGKGIGMFSELSFADMSNVPQVKIKNVRRLGGDLSL 358
>gi|302392186|ref|YP_003828006.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Acetohalobium arabaticum DSM 5501]
gi|302204263|gb|ADL12941.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Acetohalobium arabaticum DSM 5501]
Length = 371
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 147/358 (41%), Positives = 211/358 (58%), Gaps = 11/358 (3%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK +SPNP VG VIVK+ I+ GY + G HAE++AL +AA + D
Sbjct: 11 MRLALDLAAKGRGRTSPNPMVGAVIVKDGEIVGQGYHHAAGKPHAEVNALQDAADKTED- 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS++G TPPCT+ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V+
Sbjct: 70 --ATVYVTLEPCSHYGKTPPCTKALIGAGVSRVVAAMKDPNPKVAGRGLQKLADAGIEVE 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++EA E+N F + P+V +K A +LD K + S+WI+ +ESR H
Sbjct: 128 SGLLEEEAKELNEAFIKYITTERPFVILKNAMTLDGKIATKTGDSKWISGEESRRYVHRL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQ-PYRIVIDSYLRI--DPFFRVLKGGGSCI 236
R IL GIGTVL DNPRL R + Q P RIV+DS L I D + +
Sbjct: 188 RDEVDGILVGIGTVLSDNPRLTTRLPEQDGQDPIRIVLDSRLEIPLDSNLVTQESEAKTV 247
Query: 237 FTATDLPMKRKI--LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
A + + K LE+ G EVI LP+ G++DL +++ ELG+ +I L +E G ++NT+
Sbjct: 248 VAAAETADEEKAAKLEEAGVEVIFLPDKQGRIDLDSLLAELGRMEIMSLLVEGGSRINTS 307
Query: 295 LILEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
+ VD++L +I+P LIG EA + I+L +E+ IG DI I+
Sbjct: 308 FLFTELVDKILYFIAPKLIGGSEAVQAVGGQGVDKVADGIELGDYELSTIGNDILIVG 365
>gi|297543534|ref|YP_003675836.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296841309|gb|ADH59825.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 360
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 144/318 (45%), Positives = 201/318 (63%), Gaps = 8/318 (2%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL AK ++PNP VG VIVK +II GY + GG HAE++AL NA +V
Sbjct: 5 MKRALTLAKKGWGYTNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVE---NV 61
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST+++TLEPCS++G TPPC E +IKSGIK+V IA+ DPNP VSG G+ +L AGI V
Sbjct: 62 EGSTMFVTLEPCSHYGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVH 121
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M+KEA ++N F + P+V +K A S+D K + YN +S+WIT+ +SR +H
Sbjct: 122 VGMMEKEARKLNEIFVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNGKSREFAHKI 181
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
R R AI+ G+ TV+KDNP L R ++ P RI++DS RI V++ + A
Sbjct: 182 RGRVSAIMVGVNTVIKDNPMLTTR-LEGYKNPVRIIVDSRGRIPLDSNVIRDKTAKTIIA 240
Query: 240 TDLPMK---RKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T M RK LED+ EVI+L N+ GKV L+ ++I+LG+R I+ + IE G LN +
Sbjct: 241 TTELMPNNVRKKLEDMDIEVIILKNDNGKVPLKELMIKLGERGIDSVLIEGGGTLNWSAF 300
Query: 297 LEGCVDELLLYISPILIG 314
EG VD+++ +ISP +IG
Sbjct: 301 KEGIVDKVMFFISPRIIG 318
>gi|418464420|ref|ZP_13035360.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359757216|gb|EHK91372.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 374
Score = 251 bits (640), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 141/369 (38%), Positives = 213/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK+ +I+ G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTTTPNPSVGCVLVKDGKIVGKGFHFKAGDPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +T Y+TLEPCS+FG TPPC + L+++G+ KVI A+ DPNP V+GKG+ L AGI
Sbjct: 70 HGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILADAGIQSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ ++A +N GF RM+ G P+V++K+A +D KT++ + S+WIT ++R D +
Sbjct: 130 VGLLAEKAEALNKGFLKRMRTGKPFVQLKLAMGIDGKTAMASGESKWITGAQARMDVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ A+L+ TVL DNP LNVR + + QP R+++DS ++ F+
Sbjct: 190 RAKASAMLSTSQTVLADNPSLNVRWAELPNETQARYAQENLRQPVRVILDSTHKVRSDFQ 249
Query: 228 VLKG------GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
V G F T P + L+ L N G+ LQA++ ELGKR+IN
Sbjct: 250 VFLTDAPVWLAGEDDFQLTGFPASTEYLK--------LDRNHGESRLQALMTELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQ 340
L +EAG L ALI E VDEL++Y++P L+G+ A ++ LP L + +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDHARDLCHLPHLTRLADAPLWQLQSCE 361
Query: 341 KIGPDIRIL 349
+G D++++
Sbjct: 362 PVGDDLKLI 370
>gi|170767910|ref|ZP_02902363.1| riboflavin biosynthesis protein RibD [Escherichia albertii TW07627]
gi|170123398|gb|EDS92329.1| riboflavin biosynthesis protein RibD [Escherichia albertii TW07627]
Length = 361
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 152/365 (41%), Positives = 215/365 (58%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A +
Sbjct: 1 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGDGYHHRAGEPHAEVHALRMAEEK---A 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 58 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P+V++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 118 HGLMMSEAEQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 178 RAQSHAILTSSATVLADDPALTVRWSELDEQTQTLYPQENLRQPVRIVIDSQNRVTPEHR 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+++ G F T ED H +++P G +DL ++++LGK++IN
Sbjct: 238 IVQQPGETWFARTQ--------EDSRHWPETVRTLLIPEYNGHLDLVMLMMQLGKQQINS 289
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L AL+L G VDEL++YI+P L+G EA + TLP L + KF EI+
Sbjct: 290 IWVEAGPTLAGALLLAGLVDELIVYIAPKLLGSEARGLCTLPGLEKLADAPQFKFKEIRH 349
Query: 342 IGPDI 346
+GPD+
Sbjct: 350 VGPDV 354
>gi|255320997|ref|ZP_05362170.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
SK82]
gi|262379913|ref|ZP_06073068.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
SH164]
gi|255301961|gb|EET81205.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
SK82]
gi|262298107|gb|EEY86021.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
SH164]
Length = 362
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 142/354 (40%), Positives = 214/354 (60%), Gaps = 18/354 (5%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A+L S+ PNP VGCVIVK+ +II GY G HAE+ AL A Q D
Sbjct: 12 MRRAIELARLGQYSTKPNPNVGCVIVKDGQIIGEGYHPRAGQPHAEVFALRQAGEQAQD- 70
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC EAL+K +KKV+IA DPNPLV+GKG+A L AGI V+
Sbjct: 71 --ATAYVTLEPCAHYGRTPPCAEALVKHQLKKVVIACPDPNPLVAGKGIAILKQAGIEVE 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ + EA ++N GF M G+P+VR+K+ASSLD +T++ + S+WIT K +R D W
Sbjct: 129 SGICENEAAQLNCGFLKAMAVGMPYVRLKVASSLDGRTAMASGESKWITGKAARQDVQHW 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS 234
RA S ++TGI TVL D+ +LNVR ++T QP R+V+D ++ R+L
Sbjct: 189 RAISGVVITGIQTVLTDDCQLNVRCLSGTDLQTVVQPKRLVLDRQGQLPLTARILASPEQ 248
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
+ P +++ L DLG VI LP K LQ + + +I ++ +EAG L++A
Sbjct: 249 LMVMG---PFRQE-LADLG--VIQLPLQPLKGLLQTLC---NQYQIFDVLVEAGATLSSA 299
Query: 295 LILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+ E VDE++ Y++P +G++ S+ ++++ K + +G D+R+
Sbjct: 300 FLQEKLVDEMISYVAPTFLGQSARAMFNAEFISMAEQLRFKLEDATIVGDDLRL 353
>gi|398860823|ref|ZP_10616467.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM79]
gi|398234263|gb|EJN20146.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM79]
Length = 377
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 213/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCV+V++ +I+ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVVVRDGQIVGEGWHVRTGEPHAEVHALR---AAGDKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA + +LTG TVL DN RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAEASVVLTGADTVLADNARLTVRADELGLDAEQTALAMSRPPLRVLIDGRLRVPLNAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++P + G+VDL +++EL R +N++ +
Sbjct: 252 F---KAGPALV--ATCVAVEEQYAN--GPECLIVPGDDGQVDLHQLLVELANRGVNDVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQLGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R+ A
Sbjct: 365 WRVTA 369
>gi|383937013|ref|ZP_09990428.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rheinheimera
nanhaiensis E407-8]
gi|383701923|dbj|GAB60519.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Rheinheimera
nanhaiensis E407-8]
Length = 372
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 209/353 (59%), Gaps = 17/353 (4%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+SPNP VG V+V ++I GY + GG HAE+ AL A G D +T Y+TLEPCS
Sbjct: 23 TTSPNPNVGAVLVNNGQVIGKGYHQQAGGPHAEVFALREA---GSDAAQATCYVTLEPCS 79
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC EALI +G+ +V++A+ DPNP V+G+G+ L AGI V GL++ EA +N
Sbjct: 80 HHGRTPPCAEALIAAGVSRVVVAMQDPNPQVAGRGITMLREAGIQVDVGLLEAEARALNP 139
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM+R P+V++K+A+SLD +T+L N S+W+TS+ +R D +RA+SCAIL+ T
Sbjct: 140 GFLSRMERKRPYVQLKLAASLDGRTALANGDSKWLTSEAARADVQHYRAQSCAILSTAAT 199
Query: 193 VLKDNPRLNVRSIK-----------TSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATD 241
V+ DN RL +R + QP R+++D +D + GG + +
Sbjct: 200 VMADNARLTLRPEQLLRPVSALDNGQLRQPKRVILDRNGLLDHKLALFADGGEVLLCVSK 259
Query: 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILEGC 300
L +R+ L ++ ++ + DL ++ L R ++N L +EAG L L+
Sbjct: 260 LENERQ-LPNIARQIHCPLTAQAQFDLPLLLEHLALREQVNTLWVEAGATLAGTLLQLKL 318
Query: 301 VDELLLYISPILIGEAYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDIRILARF 352
VDEL++Y++P L+G + + P +S L + +L + +++ +GPD+R+ AR
Sbjct: 319 VDELIIYLAPKLLGSSAQPLAVLPEFSALAQVPELSWSDVRMVGPDLRLSARL 371
>gi|294141969|ref|YP_003557947.1| riboflavin biosynthesis protein RibD [Shewanella violacea DSS12]
gi|293328438|dbj|BAJ03169.1| riboflavin biosynthesis protein RibD [Shewanella violacea DSS12]
Length = 379
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 212/365 (58%), Gaps = 18/365 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAA--AQGY 57
M+ A++ A+ + + PNP VGCVI + +I+ G+ GG HAE+ AL A A
Sbjct: 10 MSRAIKLARRGLYTTRPNPCVGCVITLDDQILGEGFHIQAGGPHAEVHALAMATKRASQA 69
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+ +T Y+TLEPCS++G TPPC EALIK GI +V++A+ DPNP VSG+G+ L AGI
Sbjct: 70 ALKGATAYVTLEPCSHYGRTPPCAEALIKHGISRVVVAVEDPNPQVSGRGIKMLRDAGIE 129
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V GL+ EA IN GF RM+RG+PWV +K+ASSLD KT+L N +S+WIT ESR D
Sbjct: 130 VDVGLLSDEAAGINPGFMKRMERGLPWVTVKLASSLDGKTALSNGASKWITGPESRRDVQ 189
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFF 226
RAR+ A++TGI TVL D+P LNVR + HQP R+V+DS R+
Sbjct: 190 RLRARNEALVTGIETVLLDDPCLNVRHSELGLLSEQVDADSLHQPLRVVLDSRARLTSTA 249
Query: 227 RVLKGGGSCIFTAT-DLPMKRK-ILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
++ + + D P K +I+ +N G+V+L A+ LGK N +
Sbjct: 250 KLFTVTSPILLVSCIDYPQAEKDTWPQHVSGLILASDNDGRVELTALFAHLGK-TYNSVL 308
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
IEAG L ++I + DEL+LY + ++G N+ +LP + + ++ + +K+G
Sbjct: 309 IEAGATLAGSVISQNHADELILYQAMKILGSNGRNLISLPDYTDMADIPSVELIDERKLG 368
Query: 344 PDIRI 348
D R+
Sbjct: 369 GDTRL 373
>gi|421856815|ref|ZP_16289174.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|403187717|dbj|GAB75375.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 362
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 142/354 (40%), Positives = 214/354 (60%), Gaps = 18/354 (5%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A+L S+ PNP VGCVIVK+ +II GY G HAE+ AL A Q D
Sbjct: 12 MRRAIELARLGQYSTKPNPNVGCVIVKDGQIIGEGYHPRAGQPHAEVFALRQAGEQAQD- 70
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC EAL+K +KKV+IA DPNPLV+GKG+A L AGI V+
Sbjct: 71 --ATAYVTLEPCAHYGRTPPCAEALVKHQLKKVVIACPDPNPLVAGKGIAILKQAGIDVE 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ + EA ++N GF M G+P+VR+K+ASSLD +T++ + S+WIT K +R D W
Sbjct: 129 SGICENEAVQLNCGFLKAMAVGMPYVRLKVASSLDGRTAMASGESKWITGKAARQDVQHW 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS 234
RA S ++TGI TVL D+ +LNVR ++T QP R+V+D ++ R+L
Sbjct: 189 RAISGVVITGIQTVLADDCQLNVRCLPGTDLQTVVQPKRLVLDRQGQLPLTARILASPEQ 248
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
+ P +++ L DLG VI LP K LQ + + +I ++ +EAG L++A
Sbjct: 249 LMVMG---PFRQE-LADLG--VIQLPLQPLKGLLQTLC---NQYQIFDVLVEAGATLSSA 299
Query: 295 LILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+ E VDE++ Y++P +G++ S+ ++++ K + +G D+R+
Sbjct: 300 FLQEKLVDEMISYVAPTFLGQSARAMFNAEFISMAEQLRFKLEDATIVGDDLRL 353
>gi|333925866|ref|YP_004499445.1| riboflavin biosynthesis protein RibD [Serratia sp. AS12]
gi|333930819|ref|YP_004504397.1| riboflavin biosynthesis protein RibD [Serratia plymuthica AS9]
gi|386327690|ref|YP_006023860.1| riboflavin biosynthesis protein RibD [Serratia sp. AS13]
gi|333472426|gb|AEF44136.1| riboflavin biosynthesis protein RibD [Serratia plymuthica AS9]
gi|333489926|gb|AEF49088.1| riboflavin biosynthesis protein RibD [Serratia sp. AS12]
gi|333960023|gb|AEG26796.1| riboflavin biosynthesis protein RibD [Serratia sp. AS13]
Length = 369
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 220/362 (60%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMA---GERA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI V+
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGIDVR 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M EA +N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 125 HGMMLAEAEAVNPGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARQDVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTS----------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + T+ QP RI++DS R+ P R
Sbjct: 185 RAQSAAILSTSATVLADDPSLTVRWDELDTATQSLYPRENLRQPLRIILDSQNRVTPQHR 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G+ + A P + +D+ E + P + G +DL ++++L KR++N + +EA
Sbjct: 245 VVQQPGTT-WLARLQPDDQNWPQDV--EQLTFPAHGGGIDLVVMMMQLAKRQVNSIWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L+ AL+ G VDEL+LYI+P L+G+ + LP L + F E+++IGPD+
Sbjct: 302 GAALSGALLQAGLVDELILYIAPKLMGDNGRGLCRLPGLECLADAPEFVFSEVRQIGPDL 361
Query: 347 RI 348
R+
Sbjct: 362 RL 363
>gi|407688366|ref|YP_006803539.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407291746|gb|AFT96058.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 379
Score = 250 bits (639), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 147/364 (40%), Positives = 213/364 (58%), Gaps = 18/364 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAA-AQGY 57
M A+Q A+ +SPNPRVGCVIV E +++ GY G HAE+ AL +A+ A+
Sbjct: 13 MAKAIQLAQQGRFTTSPNPRVGCVIVDENNQLLGQGYHIQAGTPHAEVHALRHASNARPQ 72
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+T Y+TLEPCS+FG TPPC AL+++ + +V+IA+ DPNP V G G++ L AGI
Sbjct: 73 GAKGATAYVTLEPCSHFGRTPPCAVALVEAKVARVVIAMTDPNPNVCGNGISILQDAGIE 132
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V +M EA +N GF RM G P+VR+K+ +SLD K +L N SQWIT E+R D
Sbjct: 133 VVSDVMAAEAAALNPGFIKRMLTGKPFVRVKLGTSLDGKIALQNGVSQWITGAEARRDVQ 192
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPFFRV 228
+RA+SC +LTG GTV DNP L VR + QP R+V+DS ++ +
Sbjct: 193 QYRAQSCVVLTGSGTVQADNPSLLVREKEAQFENYPLDHIRQPARVVVDSKSKLSRDY-T 251
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
L G+ FTAT + + + L GK++L +++ LG ++ NE+ +EAG
Sbjct: 252 LFNDGNITFTAT----SQAHPDTATQHYLQLDEKDGKLNLHSLMSALGDKQYNEVWVEAG 307
Query: 289 YQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
L AL+ E VDEL+ Y +P L+G+ +M LP SL++ I L E +++G DI+
Sbjct: 308 PGLAGALLQERLVDELICYQAPKLLGDKGVSMVNLPAFTSLNECISLSLIENRQVGNDIK 367
Query: 348 ILAR 351
++ R
Sbjct: 368 LIFR 371
>gi|421781964|ref|ZP_16218424.1| riboflavin biosynthesis protein RibD [Serratia plymuthica A30]
gi|407755838|gb|EKF65961.1| riboflavin biosynthesis protein RibD [Serratia plymuthica A30]
Length = 369
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 221/362 (61%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMA---GERA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI V+
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGIDVR 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +A +N GF RM+ G P+V++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 125 HGLMLSDAEAVNPGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTS----------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + T+ QP RI++DS R+ P R
Sbjct: 185 RAQSAAILSTSATVLADDPSLTVRWDELDTATQSLYPRENLRQPLRIILDSQNRVTPQHR 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G+ + A P + +++ E + P + G VDL ++++L KR++N + +EA
Sbjct: 245 VVQQPGTT-WLARLQPDDQNWPQEV--EQLTFPAHGGGVDLVVMMMQLAKRQVNSIWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L+ AL+ G VDEL+LYI+P L+G+ + LP +L + F E+++IGPD+
Sbjct: 302 GAALSGALLQAGLVDELILYIAPKLMGDNGRGLCRLPGLENLADAPEFVFSEVRQIGPDL 361
Query: 347 RI 348
R+
Sbjct: 362 RL 363
>gi|407716845|ref|YP_006838125.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Cycloclasticus sp. P1]
gi|407257181|gb|AFT67622.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Cycloclasticus sp. P1]
Length = 370
Score = 250 bits (639), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 143/359 (39%), Positives = 217/359 (60%), Gaps = 12/359 (3%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++ PNP VGCVIV E +I+ G+ K G HAE+ AL +AAA
Sbjct: 11 MNRALELAALGRYSTKPNPCVGCVIVDEGHVIAEGWHKKAGEPHAEVYALQSAAAA---A 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC + LI +G+ +V+IA+ DPNP+VSG+GVA+L +AGI V
Sbjct: 68 KGATAYVTLEPCSHHGRTPPCADGLINAGVSRVVIAMQDPNPIVSGQGVAKLQAAGIEVA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL +++A +N F+ RM G P++ K+A SLD KT++ + SQWIT +R D H
Sbjct: 128 VGLFEEQAIALNQAFYHRMTTGQPYIFSKVAMSLDGKTAMASGESQWITGAAARKDVHQL 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH----QPYRIVIDSYLRIDPFFRVLKGG-GS 234
RA S +LTG+GT+L D+P+L R H QP+R+++DS L+ R+ K
Sbjct: 188 RAESDIVLTGVGTILADDPQLTARD-GLEHIAVEQPHRVILDSQLKTPVNARIFKSNVKV 246
Query: 235 CIFTATDLPMKRKILEDLGHEV-IVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNT 293
I T ++ L+ G V ++ + G+VDL AV L + IN + +EAG LN
Sbjct: 247 TILTCSNNQDAMTALQQAGCTVQVIAADAQGQVDLYAVHEWLRSQDINSVMVEAGALLNG 306
Query: 294 ALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
AL+ G +DEL++Y++P +G +A F++P +L +++L + + ++ DI++ R
Sbjct: 307 ALLQAGIIDELIIYMAPSALGSDARGAFSMPQVSTLSDRVQLHYVGMHELDSDIKLTYR 365
>gi|423699577|ref|ZP_17674067.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens
Q8r1-96]
gi|387997007|gb|EIK58337.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens
Q8r1-96]
Length = 377
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 132/362 (36%), Positives = 213/362 (58%), Gaps = 19/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 15 MARALELARRGHYTTHPNPRVGCVIVRDGQIVGEGWHIRAGEPHAEVHALRAA---GEQA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM++G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNEGFLKRMEQGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RA++ +LTG TVL DN RL VR ++ S P R+++D LR+
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTALIMSRPPLRVLVDGRLRVPLDAAF 251
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
K G + + AT + ++ + G E +++ + G+VDL +++EL R +NE+ +EAG
Sbjct: 252 FKAGPALV--ATCMAVEEQYAN--GPECMIVAGDDGQVDLYRLLVELAGRGVNEVLVEAG 307
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A +G VDE ++I+ +G + P + +LK EI+ +G D R+
Sbjct: 308 PRLAGAFARQGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPQLKITEIRAVGDDWRV 367
Query: 349 LA 350
+A
Sbjct: 368 IA 369
>gi|330863855|emb|CBX73948.1| riboflavin biosynthesis protein ribD [Yersinia enterocolitica
W22703]
Length = 337
Score = 250 bits (638), Expect = 7e-64, Method: Compositional matrix adjust.
Identities = 133/339 (39%), Positives = 203/339 (59%), Gaps = 23/339 (6%)
Query: 25 VKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEAL 84
+++ I+ GY G HAE+ AL A G +T Y+TLEPCS+ G TPPC +AL
Sbjct: 1 MRDGEIVGEGYHLRAGEPHAEVHALRMA---GEKARGATAYVTLEPCSHHGRTPPCADAL 57
Query: 85 IKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPW 144
+ +G+K+V+ A+ DPNP V+G+G+ +L AG+ V GLM EA +N+GF RM+ G P+
Sbjct: 58 LTAGVKRVVAAMQDPNPQVAGRGLYKLKQAGVEVDHGLMLAEAEAVNLGFLKRMRTGFPY 117
Query: 145 VRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRS 204
+++K+A+SLD +T++ + SQWITS ++R D +RA+S AIL+ TVL D+P L VR
Sbjct: 118 LQLKMAASLDGRTAMASGESQWITSPQARQDVQRFRAQSSAILSTSATVLADDPALTVRW 177
Query: 205 IKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFT--ATDLPMKRKILE 250
+ QP RI++DS+ R+ P +V++ G C TD +E
Sbjct: 178 QELDAQTQALYPQDALRQPVRIIVDSHNRVTPQHKVIQQDGPCWLARVETDEQSWPNNVE 237
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
L +LP + VDL ++++LGKR+IN + +EAG Q AL+ G VDEL+LYI+P
Sbjct: 238 QL-----LLPRHGNGVDLVLLMMQLGKRQINSVWVEAGPQFAGALLQAGVVDELILYIAP 292
Query: 311 ILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L+G +A + L L + F E++++GPD+R+
Sbjct: 293 KLLGSDARGLCQLTGLTQLSDAPEFVFSEVRQVGPDLRL 331
>gi|346723675|ref|YP_004850344.1| riboflavin biosynthesis protein RibD [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346648422|gb|AEO41046.1| riboflavin biosynthesis protein RibD [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 369
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 136/352 (38%), Positives = 215/352 (61%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR---AAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI +G+ +V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLREAGIEVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WIT +R D W
Sbjct: 133 SGVMHAQARTLNQGFLSRVERGRPWLRVKLGASLDGRTALASGESKWITGSRARADGQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTV+ D+P + VR + P R+V+D+ LR + +G ++
Sbjct: 193 RARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLRTLACRNIRQGNAPTLY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+ + L+D + + +P G+ DL AV+ L +R INE+H+EAG L+ AL+
Sbjct: 253 LHGE-NVAAPSLDD--AQFLAMPLQAGRFDLAAVLALLAERGINEVHVEAGAMLSGALLQ 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + ++ ++ L+ +++++G D+R+
Sbjct: 310 AGLVDELLVYMAPVLLGDTARPLVAGLGIETMARRHALQLLDVRQLGQDLRL 361
>gi|421464545|ref|ZP_15913235.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
WC-A-157]
gi|400205298|gb|EJO36279.1| riboflavin biosynthesis protein RibD [Acinetobacter radioresistens
WC-A-157]
Length = 351
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 142/354 (40%), Positives = 213/354 (60%), Gaps = 18/354 (5%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A+L S+ PNP VGCVIVK+ +II GY G HAE+ AL A Q D
Sbjct: 1 MRRAIELARLGQYSTKPNPNVGCVIVKDGQIIGEGYHPRAGQPHAEVFALRQAGEQAQD- 59
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC EAL+K +KKV+IA DPNPLV+GKG+A L AGI V+
Sbjct: 60 --ATAYVTLEPCAHYGRTPPCAEALVKHQLKKVVIACPDPNPLVAGKGIAILKQAGIEVE 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ + EA +N GF M G+P+VR+K+ASSLD +T++ + S+WIT K +R D W
Sbjct: 118 SGICENEAVRLNCGFLKAMAVGMPYVRLKVASSLDGRTAMASGESKWITGKAARQDVQHW 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS 234
RA S ++TGI TVL D+ +LNVR ++T QP R+V+D ++ R+L
Sbjct: 178 RAISGVVITGIQTVLADDCQLNVRCLPGTDLQTVVQPKRLVLDRQGQLPLTARILASPEQ 237
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
+ P +++ L DLG VI LP K LQ + + +I ++ +EAG L++A
Sbjct: 238 LMVMG---PFRQE-LADLG--VIQLPLQPLKGLLQTLC---NQYQIFDVLVEAGATLSSA 288
Query: 295 LILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+ E VDE++ Y++P +G++ S+ ++++ K + +G D+R+
Sbjct: 289 FLQEKLVDEMISYVAPTFLGQSARAMFNAEFISMAEQLRFKLEDATIVGDDLRL 342
>gi|339485448|ref|YP_004699976.1| riboflavin biosynthesis protein RibD [Pseudomonas putida S16]
gi|338836291|gb|AEJ11096.1| riboflavin biosynthesis protein RibD [Pseudomonas putida S16]
Length = 378
Score = 250 bits (638), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 209/366 (57%), Gaps = 26/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GERA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 72 RGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LT +VL DN R+ VR ++ S P R++ID +LR+ PF
Sbjct: 192 RARSSVVLTSATSVLADNARMTVRGAELGLDAETTALALSRTPLRVLIDGHLRLPLDAPF 251
Query: 226 FRVLKGGGSCIFTA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
F + G + + TA D P GHE++ LP + G+VDL A++ L R INE+
Sbjct: 252 F---QAGPALVVTAVADDPRYAAA----GHELLSLPGDNGQVDLSALLQALAARSINEVL 304
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
+EAG L A +G +DE L+++ +G P + + +LK E++ +G
Sbjct: 305 LEAGAGLVGAFARQGLIDEYQLFVAGTFLGSQARPLLDWPLDKMSEAPRLKITEMRAVGD 364
Query: 345 DIRILA 350
D R+ A
Sbjct: 365 DWRVTA 370
>gi|423693809|ref|ZP_17668329.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens
SS101]
gi|388002113|gb|EIK63442.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens
SS101]
Length = 375
Score = 250 bits (638), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 208/369 (56%), Gaps = 33/369 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ +I+ G+ + G HAE +AL A G
Sbjct: 13 MARALELARKGLYTTHPNPRVGCVIVRDGQIVGEGWHERTGEPHAEPNALR---AAGDKA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +AL+ +G+ +V+ + DPNP V+G+G+ +L AGI V+
Sbjct: 70 RGATVYVTLEPCSHHGRTPPCADALVTAGVARVVAGMQDPNPEVAGRGMQRLAQAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R
Sbjct: 130 SGVLEAEARALNPGFLKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA + +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 190 RAEASVVLTGADTVLADGARLTVRAAELGLDEATTALAMSRPPLRVLIDGRLRVPLNAPF 249
Query: 226 FRVLKGGG----SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
F K G +C+ P G E +V+P G+VDL++ ++ L R +N
Sbjct: 250 F---KAGPALVITCVTPENQFPR--------GPECLVVPGVDGQVDLRSALVALAARGVN 298
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQK 341
++ +EAG L A +G VDE +++I+ +G A P L +LK +++
Sbjct: 299 DVLVEAGPSLAGAFAQQGLVDEYVIFIAGKFLGSAARPLLDWPLEKLADAPQLKITDMRA 358
Query: 342 IGPDIRILA 350
+G D R+ A
Sbjct: 359 VGDDWRVTA 367
>gi|126666704|ref|ZP_01737681.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Marinobacter sp. ELB17]
gi|126628749|gb|EAZ99369.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Marinobacter sp. ELB17]
Length = 371
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 147/364 (40%), Positives = 209/364 (57%), Gaps = 16/364 (4%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q A + ++ PNPRVGCVI + RI+ + + G HAE+ AL A G
Sbjct: 10 MARAVQLAWRGRYSTHPNPRVGCVIARGDRILGESWHERAGEAHAEVRALSQA---GTSA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST Y+TLEPCS+FG TPPC +ALI++G+ +V A DPNP VSG+G+ L +AGI V
Sbjct: 67 RGSTAYVTLEPCSHFGRTPPCAKALIEAGVARVFAATLDPNPNVSGRGLEMLRAAGIRVH 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA ++N GF RM G PWVR+K+A+SLD +T++ + SQWIT ESR+D
Sbjct: 127 VGLLAGEAAKLNPGFMKRMTSGRPWVRLKMAASLDGRTAMASGESQWITGPESRSDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSHQPYRIVIDSYLRIDPFFRVLK 230
RA S AILTG+GTVL D+P L VR + + QP R++ D R ++ +
Sbjct: 187 RAMSDAILTGVGTVLADDPSLTVRREEMGDIGSATEPGRQPLRVIADRDTRTPASAKIFR 246
Query: 231 GGGSCIF--TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
GG +F TA+ + L LG + + + V++ ++ LG INE+ +EAG
Sbjct: 247 GGKVQVFCATASLATSAAQDLAALGIRLRGVAWHDKGVNVAEMLDTLGDIGINEVLVEAG 306
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR- 347
L + I E VDEL LY +P+ +G P S+ KI+ + + +++G D R
Sbjct: 307 PTLAGSFISENLVDELWLYQAPVFLGSTGRPTANLPLESMADKIQWQVLDRRQLGADQRL 366
Query: 348 ILAR 351
ILAR
Sbjct: 367 ILAR 370
>gi|339998396|ref|YP_004729279.1| riboflavin biosynthesis protein RibD [Salmonella bongori NCTC
12419]
gi|339511757|emb|CCC29466.1| riboflavin biosynthesis protein RibD [Salmonella bongori NCTC
12419]
Length = 367
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 145/360 (40%), Positives = 215/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV I+ GY + G HAE+ AL A A+
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVNNGEIVGEGYHQRAGEPHAEVYALRMAGAK---A 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC++ALI +G+ +V+ A+ DPNP V+G+G+ +L AGISV
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCSDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGISVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ +S+D +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR S + S+ QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G T R + + I +P + G +DL ++++LG+++IN + +EA
Sbjct: 244 IVQQPGETWIARTQED-SRAWPDSV--RTISVPAHNGHLDLVVLMMQLGRQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A + LP L + F EI+ +GPD+
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGSQARGLCELPGLEKLTDAPQFTFSEIRHVGPDV 360
>gi|78046354|ref|YP_362529.1| riboflavin biosynthesis diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-[5-phosphoribosylamino]uracil
reductase RibD [Xanthomonas campestris pv. vesicatoria
str. 85-10]
gi|78034784|emb|CAJ22429.1| riboflavin biosynthesis protein RibD
(Diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-[5-phosphoribosylamino]uracil
reductase) [Xanthomonas campestris pv. vesicatoria str.
85-10]
Length = 369
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/352 (38%), Positives = 215/352 (61%), Gaps = 10/352 (2%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ AL A G
Sbjct: 16 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEVFALR---AAGELA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI +G+ +V+ A+ DP P V+G G A L AGI V
Sbjct: 73 RGATAYVTLEPCAHYGRTPPCALALIDAGVARVVAAMADPFPQVNGGGFALLREAGIEVL 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M +A +N GF SR++RG PW+R+K+ +SLD +T+L + S+WIT +R D W
Sbjct: 133 SGVMHAQARTLNQGFLSRVERGRPWLRVKLGTSLDGRTALASGESKWITGSHARADGQRW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTV+ D+P + VR + P R+V+D+ LR + +G ++
Sbjct: 193 RARAGAILTGAGTVMADDPSMTVRLGEDMPVVPPLRVVLDAGLRTLACRNIRQGNAPTLY 252
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+ + L+D + + +P G+ DL AV+ L +R INE+H+EAG L+ AL+
Sbjct: 253 LHGE-NVAAPSLDDA--QFLAMPLQAGRFDLAAVLALLAERGINEVHVEAGAMLSGALLQ 309
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELL+Y++P+L+G+ A + ++ ++ L+ +++++G D+R+
Sbjct: 310 AGLVDELLVYMAPVLLGDTARPLVAGLGIETMAQRHALQLLDVRQLGQDLRL 361
>gi|423097585|ref|ZP_17085381.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens
Q2-87]
gi|397886429|gb|EJL02912.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens
Q2-87]
Length = 377
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 133/365 (36%), Positives = 214/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 15 MARALELARRGHYTTHPNPRVGCVIVRDGEVVGEGWHIRAGEPHAEVHALR---AAGVKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNEGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA++ +LTG TVL DN RL VR ++ S P R+++D LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTALIMSRPPLRVLVDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++ + G+VDL+ +++ L R +NE+ +
Sbjct: 252 F---KAGPALV--ATCMAVEEQYAN--GPECMIVAGDDGQVDLRRLLVALAARDVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A +G VDE ++I+ +G + P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFARQGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|416051830|ref|ZP_11577853.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347992642|gb|EGY34027.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 374
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 142/369 (38%), Positives = 213/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK+ I+ G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTTTPNPSVGCVLVKDGNIVGKGFHFKAGEPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +T Y+TLEPCS+FG TPPC + L+++G+ KVI A+ DPNP V+GKG+ L AGI
Sbjct: 70 HGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILADAGIQSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ ++A +N GF RM+ G P+V++K+A S+D KT++ + S+WIT ++R D +
Sbjct: 130 VGLLAEKAEVLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMDVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA++ A+L+ TVL DNP LNVR + + QP R+++DS ++ F+
Sbjct: 190 RAKASAMLSTSQTVLADNPSLNVRWAELPNETQARYAQEHLRQPVRVILDSAHKVRSDFQ 249
Query: 228 VLKG------GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
V G F T P + L+ L N G+ LQA++ ELGKR+IN
Sbjct: 250 VFLTDAPVWLAGEDDFQLTGFPASTEYLK--------LDRNHGESRLQALMTELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQ 340
L +EAG L ALI E VDEL++Y++P L+G+ A ++ LP L + +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDHARDLCHLPHLTRLADAPLWQLQSCE 361
Query: 341 KIGPDIRIL 349
+G D++++
Sbjct: 362 PVGDDLKLI 370
>gi|378578439|ref|ZP_09827114.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Pantoea stewartii subsp. stewartii DC283]
gi|377818719|gb|EHU01800.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Pantoea stewartii subsp. stewartii DC283]
Length = 367
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/362 (38%), Positives = 214/362 (59%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV++ I+ G+ + G HAE+ AL A A+
Sbjct: 7 MARALELARRGRFTTMPNPNVGCVIVRDGDIVGEGWHQRAGEPHAEVHALRMAGAR---A 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI++G+K+V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 RGATAYVTLEPCSHHGRTPPCCDALIEAGVKRVVAAMQDPNPQVAGRGLHRLQQAGIEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +EA +N GF RM+ G PW+++K+ +SLD +T++ + SQWITS +R D
Sbjct: 124 HGLMMQEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSPAARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR +T QP R+++DS R+ P +
Sbjct: 184 RAQSAAILSSSATVLADDPSLTVRWAELDSDSQRLIDAQTLRQPVRVIVDSQNRVTPQHK 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G +R D ++ V P ++DL A++I LG+R+IN + +EA
Sbjct: 244 LIEQLGETWLMRQQADTQR--WPDSVTQIPV-PLRDSQLDLVALMIVLGQRQINSVWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A + L L F +++++G D+
Sbjct: 301 GATLAGALLQAGLVDELIVYVAPKLLGNDARGLCQLTGLTQLADAPVFAFSDVRQVGSDL 360
Query: 347 RI 348
R+
Sbjct: 361 RL 362
>gi|445412737|ref|ZP_21433294.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. WC-743]
gi|444766787|gb|ELW91046.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. WC-743]
Length = 370
Score = 249 bits (637), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 136/357 (38%), Positives = 217/357 (60%), Gaps = 25/357 (7%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AKL S+ PNP VGCVIVK+ +I G+ G HAE+ A+ A G
Sbjct: 21 MQKAIELAKLGQYSTRPNPNVGCVIVKDGVLIGEGFHPQAGQPHAEVFAMRQA---GASA 77
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC + L+++G+ KVI+A DPNPLV+GKGV L AGI V+
Sbjct: 78 KGATAYVTLEPCAHYGRTPPCAKGLVEAGVAKVIVACADPNPLVAGKGVEILRQAGIVVE 137
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ +++A ++N+GF M G+P+VR+K+ASSLD +T++ + S+WIT ESR D W
Sbjct: 138 TGVCEQQATQLNLGFLKAMATGLPYVRLKVASSLDGRTAMASGESKWITGAESRQDVQHW 197
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH-----QPYRIVIDSYLRIDPFFRVLKGGGS 234
RA S A++TGI T+L D+P+LNVRS+ QP R+++D R+ +VLK +
Sbjct: 198 RAISGAVITGIETILADDPQLNVRSLANVELEKVVQPKRVILDRKGRLPLTAQVLKHPET 257
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRK---INELHIEAGYQL 291
+ P +R++ E LG + ++D+Q++ LG K I ++ +EAG L
Sbjct: 258 VMVMG---PFRRELAE-LG---------VVQLDVQSLKDLLGTLKDFQIYDVLVEAGATL 304
Query: 292 NTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+TA + E V+EL+ Y++P +G++ ++ ++++ ++ + G DIR+
Sbjct: 305 STAFLQEKLVNELISYVAPTFLGQSARPMFNAEFETMAQQLRFMLKDVHQFGDDIRL 361
>gi|386010175|ref|YP_005928452.1| protein RibD [Pseudomonas putida BIRD-1]
gi|313496881|gb|ADR58247.1| RibD [Pseudomonas putida BIRD-1]
Length = 376
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 208/366 (56%), Gaps = 26/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 70 RGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 130 SGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RARS +LT +VL DN R+ VR ++ S P R+++D LR+ PF
Sbjct: 190 RARSSVVLTSAASVLADNARMTVRGAELGLDAETTALALSRTPLRVLVDGRLRLSLASPF 249
Query: 226 FRVLKGGGSCIFTA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
F + G + + TA D P GHE++ LP + G+VDL A++ L R +NE+
Sbjct: 250 F---QAGPALVVTAVADDPRYAAA----GHELLSLPGDNGQVDLGALLHALAARGVNEIL 302
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
+EAG L A +G VDE L+++ +G P + + +LK E++ +G
Sbjct: 303 LEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEMRAVGD 362
Query: 345 DIRILA 350
D R+ A
Sbjct: 363 DWRVTA 368
>gi|407794404|ref|ZP_11141431.1| riboflavin biosynthesis protein RibD [Idiomarina xiamenensis
10-D-4]
gi|407213004|gb|EKE82865.1| riboflavin biosynthesis protein RibD [Idiomarina xiamenensis
10-D-4]
Length = 370
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/364 (38%), Positives = 216/364 (59%), Gaps = 28/364 (7%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+L ++PNP VGCV+VK+ +++ G+ + G HAE+ AL A G
Sbjct: 13 MLHALELARLGQFTTAPNPNVGCVLVKDGELVAEGWHRCAGEPHAEVHAL---QAAGGRA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC +ALI++ + +V++A+ DPNP V+G G+A+L +AGI V
Sbjct: 70 RGATAYVTLEPCSHYGRTPPCADALIRAQVARVVVAMEDPNPQVAGAGLARLKAAGIDVV 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ A +N GF +RM+R PW+R+K+A+SLD T+L N SQWIT D +W
Sbjct: 130 SGVQSAAAERLNQGFCARMRRQRPWLRVKLAASLDGATALANGESQWITGG---ADVQVW 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RA+S AILTG TVL D+P+L VR + QP ++V+DS R+ R+
Sbjct: 187 RAKSHAILTGADTVLMDDPQLTVRLNEWPKGVCKPVPEQLRQPIKVVVDSRQRVTRQARI 246
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
+ ++ A+ P R + +V+P +DL ++ +L +R INEL E G
Sbjct: 247 YQHQAE-VWRAS--PSARDAQD------LVVPQCGQFIDLALLMQQLAERGINELWSECG 297
Query: 289 YQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
+L AL+ + VDEL++Y +P L+G A + LP +D+ +L +++ +G D+R
Sbjct: 298 PRLAGALLAQQLVDELIIYQAPKLMGASARQLLQLPQFEQMDEVPELDIRDVRYVGTDLR 357
Query: 348 ILAR 351
I+A+
Sbjct: 358 IIAQ 361
>gi|244539054|dbj|BAH83097.1| fused diaminohydroxyphosphoribosylaminopyrimidin e deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Candidatus Ishikawaella capsulata Mpkobe]
Length = 371
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 149/371 (40%), Positives = 212/371 (57%), Gaps = 36/371 (9%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDAL----LNAAAQ 55
M+ AL+ AK +SPNP VGCVIVK II G+ + G +HAEI+AL +N A+
Sbjct: 7 MSRALELAKRGRFTTSPNPNVGCVIVKNNHIIGEGWHQRAGEDHAEINALKKITVNKQAE 66
Query: 56 GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAG 115
G +TVY+TLEPCS+FG PPC ALI +GIK+V+ A+ DPNP V+G+G L AG
Sbjct: 67 G-----ATVYVTLEPCSHFGKVPPCCNALINAGIKRVVAAMTDPNPRVNGRGFHLLKQAG 121
Query: 116 ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRND 175
I VKQGLM +A +N GF RM+ G+P++R+K+A S+D +T++ S+WITS SR D
Sbjct: 122 IEVKQGLMINQAKMLNRGFIKRMKTGLPFIRLKLAMSIDGRTAMQTGESKWITSVTSRRD 181
Query: 176 SHIWRARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRID 223
+ RA S A+L+ T+ DNP L VR S T QP RI+IDS +
Sbjct: 182 VQVMRAESSALLSSGMTIQTDNPSLTVRWKELDEENKKFLSESTLRQPTRIIIDSKNLVT 241
Query: 224 PFFRVLKGGGSC-----IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR 278
P ++ G IF K K I+ P GK+D+ ++I LG
Sbjct: 242 PEHHIINQPGETWLIRHIFDNNKWHNKVK--------QIIAPLKDGKIDITSLINILGNL 293
Query: 279 KINELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFH 337
+IN++ +EAG +L+ + I VDE+++YI+P ++G A + L L K KF
Sbjct: 294 EINDILVEAGAKLSGSFIKAHAVDEIIIYIAPKILGTTARGLCELNHLTELKDAFKFKFT 353
Query: 338 EIQKIGPDIRI 348
++ ++G DIR+
Sbjct: 354 DMSQLGKDIRL 364
>gi|419954681|ref|ZP_14470817.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri TS44]
gi|387968545|gb|EIK52834.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri TS44]
Length = 368
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 205/363 (56%), Gaps = 19/363 (5%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A + S+ PNPRVGCVIV ++ G+ G HAE+ AL A G
Sbjct: 9 MARALQLAHKGLYSTHPNPRVGCVIVAAGELVGEGWHVRAGEPHAEVHALRQA---GERA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EAL+++G+ +V+ A+ DPNP V+G+G+ L SAGI V
Sbjct: 66 RGATAYVTLEPCSHHGRTPPCAEALVRAGVGRVVAAMQDPNPQVAGRGLQLLRSAGIDVA 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R +
Sbjct: 126 SGVLEAEARELNGGFIKRMESGLPFVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +LTG TVL D RL VR ++ P R+++D LR+
Sbjct: 186 RARSSVVLTGADTVLMDAARLTVRGAELGLDVETTALALQRPPLRVLVDGRLRVPLDASF 245
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
+ G + + TA + I GHE +VL + +VDL A++ EL R NE+ +EAG
Sbjct: 246 FQAGPALVATA--VAGCEDIYRRAGHEALVLGDE--RVDLPALLRELAVRGANEVLLEAG 301
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G +DE L+++ +G + P + + +LK +I+ +G D +I
Sbjct: 302 PRLVGAFARLGLIDEYQLFVAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDDWKI 361
Query: 349 LAR 351
+AR
Sbjct: 362 VAR 364
>gi|148545799|ref|YP_001265901.1| riboflavin biosynthesis protein RibD [Pseudomonas putida F1]
gi|148509857|gb|ABQ76717.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Pseudomonas putida F1]
Length = 376
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 208/366 (56%), Gaps = 26/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 70 RGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 130 SGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LT +VL DN R+ VR ++ S P R+++D LR+ PF
Sbjct: 190 RARSSVVLTSAASVLADNARMTVRGAELGLDAETAALALSRTPLRVLVDGRLRLPLAAPF 249
Query: 226 FRVLKGGGSCIFTA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
F + G + + TA D P GHE++ LP + G+VDL A++ L R +NE+
Sbjct: 250 F---QAGPTLVVTAVADDPRYAAA----GHELLSLPGDNGQVDLGALLHALAARGVNEVL 302
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
+EAG L A +G VDE L+++ +G P + + +LK E++ +G
Sbjct: 303 LEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEMRAVGD 362
Query: 345 DIRILA 350
D R+ A
Sbjct: 363 DWRVTA 368
>gi|398925606|ref|ZP_10661980.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM48]
gi|398171967|gb|EJM59855.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM48]
Length = 377
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 211/365 (57%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCVIV+ +I+ G+ + G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVIVQGGQIVGEGWHERAGEPHAEVHAL---HAAGEQA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLEQAGIVTE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P++R+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNQGFLKRMEHGLPFLRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL DN RL VR ++ S P R+++D LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRADELGLDAEQTALAMSRPPLRVLVDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + T + + G E +++P G+VDL+ +++EL R +NE+ +
Sbjct: 252 F---KAGPALVATCVAVEEQYAN----GPECLIVPGYDGQVDLRQLLVELAARGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQLGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|163750014|ref|ZP_02157258.1| riboflavin biosynthesis protein RibD [Shewanella benthica KT99]
gi|161330288|gb|EDQ01269.1| riboflavin biosynthesis protein RibD [Shewanella benthica KT99]
Length = 380
Score = 249 bits (636), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 212/366 (57%), Gaps = 19/366 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQG--- 56
M+ A++ A+ + + PNP VGCVI + +I+ G+ GG HAE+ AL A +
Sbjct: 10 MSRAIKLARRGLYTTRPNPCVGCVITLDDQILGEGFHIRAGGPHAEVHALAMATQRADGL 69
Query: 57 YDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGI 116
D+ +T Y+TLEPCS++G TPPC EALIK GI +V++A+ DPNP VSG+G+ L AGI
Sbjct: 70 ADLKGATAYVTLEPCSHYGRTPPCAEALIKHGISRVVVAVEDPNPRVSGRGINMLKDAGI 129
Query: 117 SVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDS 176
V GL+ EA +IN GF RMQ +PWV +K+A+SLD KT+L N +S+WIT ESR D
Sbjct: 130 KVDVGLLGDEAAQINPGFMKRMQSALPWVTVKLAASLDGKTALSNGASKWITGPESRRDV 189
Query: 177 HIWRARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPF 225
RARSCA++TGI TVL D+P LNVR + QP R+++DS R+
Sbjct: 190 QRLRARSCALVTGIETVLLDDPSLNVRHSELGLLAQQVDADSLLQPLRVILDSRARLTSS 249
Query: 226 FRVLKGGGSCIF-TATDLPM-KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINEL 283
++ + + D P ++ + + + +N G+V+L A+ LGK N +
Sbjct: 250 AKLFAITSPILLVSCVDYPQAEQDTWPEHVSGLTLASDNDGRVELTALFSHLGK-TCNSV 308
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKI 342
IEAG L ++I DEL+LY + L+G N+ +LP + + ++ + +K+
Sbjct: 309 LIEAGATLAGSVISHNHADELILYQAMKLLGANGRNLISLPDYTDMADIPSVELIDERKL 368
Query: 343 GPDIRI 348
G D R+
Sbjct: 369 GDDTRL 374
>gi|388466787|ref|ZP_10140997.1| riboflavin biosynthesis protein RibD [Pseudomonas synxantha BG33R]
gi|388010367|gb|EIK71554.1| riboflavin biosynthesis protein RibD [Pseudomonas synxantha BG33R]
Length = 375
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/369 (36%), Positives = 208/369 (56%), Gaps = 33/369 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ +I+ G+ + G HAE +AL A G
Sbjct: 13 MARALELARKGLYTTHPNPRVGCVIVRDGQIVGEGWHERTGEPHAEPNALR---AAGEKA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +AL+ +G+ +V+ + DPNP V+G+G+ +L AGI V+
Sbjct: 70 RGATVYVTLEPCSHHGRTPPCADALVSAGVVRVVAGMQDPNPEVAGRGMQRLAQAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R
Sbjct: 130 SGVLEAEARALNPGFLKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA + +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 190 RAEASVVLTGADTVLADGARLTVRAAELGLDEQTTALAMSRPPLRVLIDGRLRVPLNAPF 249
Query: 226 FRVLKGGG----SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
F K G +C+ P G E +V+P G+VDL++ ++ L R +N
Sbjct: 250 F---KAGPALVITCVTPENQFPR--------GPECLVVPGVEGQVDLRSALVALAARGVN 298
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQK 341
++ +EAG L A +G VDE +++I+ +G A P L +LK +++
Sbjct: 299 DVLVEAGPSLAGAFAQQGLVDEYVIFIAGKFLGSAARPLLDWPLEKLVDAPQLKITDMRA 358
Query: 342 IGPDIRILA 350
+G D R+ A
Sbjct: 359 VGDDWRVTA 367
>gi|94500359|ref|ZP_01306891.1| riboflavin-specific deaminase/reductase [Bermanella marisrubri]
gi|94427394|gb|EAT12372.1| riboflavin-specific deaminase/reductase [Oceanobacter sp. RED65]
Length = 370
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 142/365 (38%), Positives = 214/365 (58%), Gaps = 29/365 (7%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q AK + S+ PNPRVGCV+VKE II GY G HAE++AL A +
Sbjct: 8 MARAIQLAKQGLYSTDPNPRVGCVLVKEGNIIGEGYHVRAGEGHAEVNALAQAGSA---A 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC++ LIK+GI+ ++ A+ DPNP VSG+G ++ +AGI +
Sbjct: 65 QGATAYVTLEPCSHFGRTPPCSDTLIKAGIRTLVCAMQDPNPEVSGRGFEKMRAAGIEII 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM G+P+VR+KIASSLD +T++ + SQWIT +R D
Sbjct: 125 SGVLESEAKKLNPGFIKRMSGGLPYVRVKIASSLDGRTAMASGESQWITGGNARADVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RARS AI++GI ++L D+ L VR + + QP R+++DS+ RI P +
Sbjct: 185 RARSSAIISGIDSILADDSSLTVREDELALADAELAKRAIEKQPLRVILDSHGRIRPDHK 244
Query: 228 VLKGGGS---CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
V+ G C+ LP +E L L + ++L+ ++ L R+ NE+
Sbjct: 245 VVNQSGQTLVCVRHGVQLP---NFVESL-----ALNHGESGLNLRELLKALADRQCNEVL 296
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
+E G L I +G VDE++ Y++P L+G EA +F + D KI ++ +++ G
Sbjct: 297 VETGSTLAGQFIQQGLVDEVVHYMAPCLMGSEARPVFAMDIETMAD-KIPVQISDVRHFG 355
Query: 344 PDIRI 348
DIR
Sbjct: 356 NDIRF 360
>gi|104779848|ref|YP_606346.1| riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48]
gi|95108835|emb|CAK13531.1| Riboflavin biosynthesis protein RibD [Pseudomonas entomophila L48]
Length = 375
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 205/365 (56%), Gaps = 24/365 (6%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A+ + + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 12 MARAVELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GELA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G G+ +L AGI V
Sbjct: 69 RGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGNGLRRLREAGIEVA 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R
Sbjct: 129 SGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARAAVQRL 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LT +VL+DN R+ VR ++ S P R+++D LR+ PF
Sbjct: 189 RARSSVVLTSAQSVLQDNARMTVRGEELGLDSALTTLALSRPPLRVLVDGRLRLPLDAPF 248
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ G + A D P GHE++ LP + +VDL A++ L +R +NE+ +
Sbjct: 249 FQA--GPALVVTAAGDDPRYAAA----GHELLNLPGDDDQVDLPALLRCLAERGVNEILL 302
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG L A +G VDE L+++ +G P + + +LK E++ +G D
Sbjct: 303 EAGAGLVGAFARQGLVDEFQLFVAGTFLGSEARPLLDWPLSKMSEAPRLKITEMRAVGDD 362
Query: 346 IRILA 350
R+ A
Sbjct: 363 WRVTA 367
>gi|419837977|ref|ZP_14361415.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HC-46B1]
gi|421354969|ref|ZP_15805301.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HE-45]
gi|423735934|ref|ZP_17709126.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HC-41B1]
gi|424010272|ref|ZP_17753206.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HC-44C1]
gi|395954094|gb|EJH64707.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HE-45]
gi|408629360|gb|EKL02059.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HC-41B1]
gi|408856525|gb|EKL96220.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HC-46B1]
gi|408863302|gb|EKM02792.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HC-44C1]
Length = 365
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 213/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 22 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 78
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+ GL++ +A +N
Sbjct: 79 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGLLEADARALN 138
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 139 RGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 198
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 199 TVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ--------- 249
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T PM R E+ E+ + N GK+DL+ ++ +L ++ +N+L +EAG QL +LI +
Sbjct: 250 TPSPMLRVASENA--ELCISAEN-GKLDLRELLAQLAQQHNVNQLWVEAGSQLAKSLIEQ 306
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 307 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 359
>gi|26987252|ref|NP_742677.1| riboflavin biosynthesis protein RibD [Pseudomonas putida KT2440]
gi|24981894|gb|AAN66141.1|AE016242_9 riboflavin biosynthesis protein RibD [Pseudomonas putida KT2440]
Length = 378
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 208/366 (56%), Gaps = 26/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GELA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 72 RGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LT +VL DN R+ VR ++ S P R+++D LR+ PF
Sbjct: 192 RARSSVVLTSAASVLADNARMTVRGAELGLDAETTALALSRTPLRVLVDGRLRLPLAAPF 251
Query: 226 FRVLKGGGSCIFTA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
F + G + + TA D P GHE++ LP + G+VDL A++ L R +NE+
Sbjct: 252 F---QAGPALVVTAVADDPRYAAA----GHELLSLPGDNGQVDLGALLHALAARGVNEIL 304
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
+EAG L A +G VDE L+++ +G P + + +LK E++ +G
Sbjct: 305 LEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEMRAVGD 364
Query: 345 DIRILA 350
D R+ A
Sbjct: 365 DWRVTA 370
>gi|398901769|ref|ZP_10650560.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM50]
gi|398179380|gb|EJM66992.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM50]
Length = 377
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 212/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A K + PNPRVGCV+V + +I+ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGHYTTHPNPRVGCVVVLDGQIVGEGWHVRTGEPHAEVHALR---AAGDKA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+ +
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATE 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEGEARKLNQGFLKRMEHGLPFVRVKLAMSLDGRTAMESGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA + +LTG TVL DN RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAEASVVLTGADTVLADNARLTVRADELGLDAEQTALAMSRPPLRVLIDGRLRVPLNAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT + ++ + G E +++P + G+VDL +++EL R +N++ +
Sbjct: 252 F---KAGPALV--ATCVAVEEQYAN--GPECLIVPGDDGQVDLHQLLVELASRGVNDVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++I+ +G + P + +LK EI+ +G D
Sbjct: 305 EAGPRLAGAFAQLGLVDEFQIFIAGKFLGSSARPLLDWPLAQMKDAPELKITEIRAVGDD 364
Query: 346 IRILA 350
R+ A
Sbjct: 365 WRVTA 369
>gi|421344015|ref|ZP_15794418.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HC-43B1]
gi|395940095|gb|EJH50776.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HC-43B1]
Length = 367
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 213/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T PM R E+ E+ + N GK+DL+ ++ +L ++ +N+L +EAG QL +LI +
Sbjct: 252 TPSPMLRVASENA--ELCISAEN-GKLDLRELLAQLAQQHNVNQLWVEAGSQLAKSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|359396874|ref|ZP_09189924.1| Riboflavin biosynthesis protein ribD [Halomonas boliviensis LC1]
gi|357968668|gb|EHJ91117.1| Riboflavin biosynthesis protein ribD [Halomonas boliviensis LC1]
Length = 394
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 216/365 (59%), Gaps = 18/365 (4%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A K + PNPRVGCVIV++++I+ G+ G HAEI AL +A G
Sbjct: 13 MARALQLALKGLYTTDPNPRVGCVIVRDEQIVGEGFHLRAGEPHAEIHALNDA---GERA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC AL + + +V+IA+ DPNP VSG+G+ L G+ V
Sbjct: 70 QGATAYVTLEPCSHTGRTGPCAVALKDASVSRVVIAMVDPNPQVSGRGIRMLKEGGVEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N GF +RM P+VR+K+A SLD +T++ + SQWIT E+R
Sbjct: 130 VGLLESEARSLNPGFIARMSHQRPFVRLKMAMSLDGRTAMGSGESQWITGPEARTQVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK---------TSHQPYRIVIDSYLRIDPFFRVL- 229
RARS AIL+G+ +++ D+ RL +R + QP R+++D++LR+ L
Sbjct: 190 RARSSAILSGVESLIMDDSRLTLRKEQLHLDNVDDVVRRQPLRVILDTHLRLPLAAACLS 249
Query: 230 KGGGSCIFTATDLP-MKRKILEDLGHEVIVLP-NNLGKVDLQAVIIELGK-RKINELHIE 286
+ G + + T D P KR+ L G EV VLP + G++DL A++ L + ++NEL +E
Sbjct: 250 EPGRTLVITTPDHPEEKRERLTQAGAEVHVLPAGSDGRIDLVAMLQWLAENEQVNELLVE 309
Query: 287 AGYQLNTALILEGCVDELLLYISPILI-GEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
G L A++ VDEL L+++P L+ GEA +F LP + + L H+++ +G D
Sbjct: 310 TGATLAGAMLDAALVDELQLFVAPTLLGGEARPLFALPGLSRMADQRLLTIHDMRAVGRD 369
Query: 346 IRILA 350
RI+A
Sbjct: 370 WRIIA 374
>gi|352106423|ref|ZP_08961409.1| riboflavin biosynthesis protein RibD [Halomonas sp. HAL1]
gi|350597763|gb|EHA13890.1| riboflavin biosynthesis protein RibD [Halomonas sp. HAL1]
Length = 388
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/365 (40%), Positives = 219/365 (60%), Gaps = 18/365 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++++I+ G+ + G HAEI AL NAA G
Sbjct: 13 MAQALKLARKGLYTTDPNPRVGCVIVRDEQIVGEGFHRRAGEPHAEIHAL-NAA--GERA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G T PC AL K+ + +V+IA+ DPNP VSG+G+ L AGI V
Sbjct: 70 QGATAYVTLEPCSHTGRTGPCAVALQKAKVARVVIAMQDPNPQVSGRGIRLLEEAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
L++ EA +N GF +RM P+VR+K+A SLD +T++ + SQWIT E+R
Sbjct: 130 VSLLESEARALNPGFIARMTTQRPFVRLKMAMSLDGRTAMGSGESQWITGPEARTQVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPFFRVLK 230
RARS AIL+G+ +++ D+ RL +R+ + S QP R+V+D++LR+ L
Sbjct: 190 RARSSAILSGVESIIMDDSRLTLRAEQLSLANADEVVQRQPLRVVLDTHLRLPLAAACLS 249
Query: 231 GGGSCIFTAT--DLPMKRKILEDLGHEVIVLP-NNLGKVDLQAVIIELGK-RKINELHIE 286
G + T + KR+ L G EV VLP + G++DL ++ L + ++NEL +E
Sbjct: 250 EPGRTLVVTTPDHVAQKRERLTKAGAEVHVLPAGSDGRIDLALMLNWLAESEQVNELLVE 309
Query: 287 AGYQLNTALILEGCVDELLLYISPILI-GEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
G L AL+ VDEL L+++P L+ GEA +F LP + + +L H+++ +G D
Sbjct: 310 TGATLAGALLDAALVDELQLFVAPTLLGGEARPLFALPGLSRMADQRRLTIHDMRAVGRD 369
Query: 346 IRILA 350
RI+A
Sbjct: 370 WRIIA 374
>gi|325276595|ref|ZP_08142337.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. TJI-51]
gi|324098274|gb|EGB96378.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. TJI-51]
Length = 376
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 208/366 (56%), Gaps = 26/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLFTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GERA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 70 RGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGRGLRRLAEAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 130 SGVLEAEARALNPGFLKRMEHGVPYVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LT +VL DN R+ VR ++ S P R+++D LR+ PF
Sbjct: 190 RARSSVVLTSAASVLADNARMTVRGSELGLDAETTALALSRPPLRVLVDGRLRLPLDAPF 249
Query: 226 FRVLKGGGSCIFTA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
F + G + + TA D P GHE++ LP + G+VDL A++ LG R +NE+
Sbjct: 250 F---QAGPALVVTAVADDPGYAAA----GHELLCLPGDNGQVDLAALLHALGARGVNEVL 302
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
+EAG L A G VDE L+++ +G P + + +LK E++ +G
Sbjct: 303 LEAGASLVGAFARLGLVDEYQLFVAGTFLGSHARPLLDWPMERMSEAPRLKITEMRAVGD 362
Query: 345 DIRILA 350
D R+ A
Sbjct: 363 DWRVTA 368
>gi|409201471|ref|ZP_11229674.1| riboflavin biosynthesis protein [Pseudoalteromonas flavipulchra
JG1]
Length = 370
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 135/352 (38%), Positives = 212/352 (60%), Gaps = 24/352 (6%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNP VGCVIVK+ I+ G G HAE+ AL A A+ +T Y+TLEPCS
Sbjct: 25 TTTPNPNVGCVIVKDGEIVGEGAHLKAGEGHAEVHALKQAGAK---AAGATAYVTLEPCS 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC + LI +G+ +V+ A+ DPNP V+G+G+A L +AGI+ GL++ +A +N
Sbjct: 82 HYGRTPPCAKGLIDAGVSRVVAAMVDPNPQVAGRGLAMLEAAGIATASGLLEPQARALNT 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF RM+ G+P+V K+A+S+D KT+L N S+WITS E+R D RA+SC +LTG T
Sbjct: 142 GFLKRMEYGLPFVTCKLAASVDGKTALNNGQSKWITSAEARLDVQRHRAQSCVVLTGADT 201
Query: 193 VLKDNPRLNVRS---------IKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLP 243
V+ DN RLNVR QP R +IDS R+ P + K A+ +
Sbjct: 202 VMVDNARLNVREEFLQDTDYPQSELRQPIRAIIDSQNRLTPDLALFK-------IASPVI 254
Query: 244 MKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
+ R+ +++ E IV+P GK+DL+AV+ +L ++ N + +EAG L + +
Sbjct: 255 IFRRTIDNSAQWPHFVEQIVVPEINGKLDLKAVLNKLAEKHSNYVWLEAGATLAGVMHEQ 314
Query: 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
G +DE ++Y++P +IG +F P ++ + +L F ++ ++GPD++++A
Sbjct: 315 GLIDEYIIYLAPKIIGAGKGLFNTTPLSAMSQIPELVFGDVCQVGPDLKLIA 366
>gi|304312168|ref|YP_003811766.1| riboflavin biosynthesis bifunctional
diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase oxidoreductase [gamma proteobacterium HdN1]
gi|301797901|emb|CBL46123.1| Riboflavin biosynthesis bifunctional RIBD:
diaminohydroxyphosphoribosylaminopyrimid ine deaminase +
5-amino-6-(5-phosphoribosylamino)uracil reductase
oxidoreductase protein [gamma proteobacterium HdN1]
Length = 389
Score = 248 bits (634), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 145/369 (39%), Positives = 204/369 (55%), Gaps = 20/369 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ ALQ A + + PNPRVGCVIV+ I+ G+ + G HAE+ AL A G
Sbjct: 14 MSRALQLAPRGLYTTHPNPRVGCVIVQNGAIVGEGWHQLAGQGHAEVLALEQA---GERA 70
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALIK+GI +V+ A++DPNP VSG G L +AGI
Sbjct: 71 KGATAYVTLEPCAHYGRTPPCANALIKAGIARVVGAMSDPNPRVSGGGYGLLRAAGIKTD 130
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A +N GF RM+ G+PWVR+K S D +T++ SQWITS +R D
Sbjct: 131 NGLLKQQAEALNPGFIKRMRGGLPWVRVKSGISQDARTAMACGESQWITSSPARADVQRL 190
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK--------------TSHQPYRIVIDSYLRIDPF 225
RARS A++TG+ TVL D+P L VR T QP R+++DS LR
Sbjct: 191 RARSEAVITGVDTVLSDDPALTVRPASWPADDAPWGWPDGFTPIQPLRVILDSQLRTPTS 250
Query: 226 FRVLKGGGSCIFTATDL-PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
R+L+ G +F P + + L G I P G+VDL V+ L +++NE+
Sbjct: 251 ARLLREPGQNVFAHIGSNPEREEALRACGATCISFPGRDGRVDLVPVLQWLAAQEVNEVL 310
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
IEAG + + I G VDE ++Y +P L+G EA L + K L + ++IG
Sbjct: 311 IEAGASVAGSFIEAGLVDEWVVYQAPCLLGSEARPALILEGLSGMKDKRTLDLVDSRQIG 370
Query: 344 PDIRILARF 352
D R R
Sbjct: 371 LDHRFTYRL 379
>gi|325918412|ref|ZP_08180540.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
vesicatoria ATCC 35937]
gi|325535374|gb|EGD07242.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Xanthomonas
vesicatoria ATCC 35937]
Length = 364
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 134/355 (37%), Positives = 214/355 (60%), Gaps = 16/355 (4%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A + + + PNP VGCVIV++ + G+ + GG HAE+ A G
Sbjct: 11 MAQALRLAERGAYTTRPNPMVGCVIVRDGVCVGEGFHQRAGGPHAEV---FALRAAGALA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC ALI++G+ +V+ A+ DP P V+G G A L AGI V
Sbjct: 68 RGATAYVTLEPCAHYGRTPPCALALIEAGVARVVAAMADPFPQVNGGGFALLREAGIEVV 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++Q +A ++N GF SR++RG PW+R+K+ +SLD +T+L + S+WIT ++R D W
Sbjct: 128 SGVLQAQARQLNQGFLSRVERGRPWLRVKLGASLDGRTALASGQSKWITGADARADVQRW 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--QPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RAR+ AILTG GTVL D+P + VR + P R+V+D+ LR + +G ++
Sbjct: 188 RARAGAILTGAGTVLADDPAMTVRLGDDTPFVPPLRVVLDARLRTLECEHIRQGDAPTLY 247
Query: 238 ---TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
A +P + E + +P + G+ DL +V+ L +R INE+H EAG L+ A
Sbjct: 248 LHGNAVPVPSLQNA------EFVGMPLHEGRFDLGSVLALLSERGINEVHAEAGATLSGA 301
Query: 295 LILEGCVDELLLYISPILIGEAYN-MFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L+ G VDELL+Y +P+++G+A + ++ ++ L +++++G D+R+
Sbjct: 302 LLQAGLVDELLVYFAPVVLGDAARPLLAGLGIDTMAQRRTLHLADVRQLGQDLRL 356
>gi|284006397|emb|CBA71633.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Arsenophonus nasoniae]
Length = 369
Score = 248 bits (634), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 214/365 (58%), Gaps = 20/365 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL AK +SPNP VGCVIV++ ++ G+ G HAEI AL A G
Sbjct: 9 MSRALSLAKQGRFTTSPNPNVGCVIVRDGEVVGEGFHCKTGEAHAEIYALQMA---GEKA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC +ALI +GI++V++A+ DPNP V+G+G+ +L AGI V
Sbjct: 66 NGATAYVTLEPCSHYGKTPPCADALISAGIQRVVVAMQDPNPQVAGRGLLKLQQAGIEVI 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA ++N GF RM+ G P+V++K+A+SLD +T+L + S+WITS +R D +
Sbjct: 126 HGLLIDEAEQLNQGFLKRMRTGFPYVQLKLAASLDGRTALASGESKWITSPAARQDVQSF 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AILT TVL DNP LNVR ++ QP RIV+D ++ P
Sbjct: 186 RAQASAILTTSATVLADNPALNVRWKDFAPELQNIYPEESLRQPIRIVLDRNNQVKPEHF 245
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V K G C ++ P+ + D+ I +P +DL ++++L KR IN + +E+
Sbjct: 246 VTKSAGECWLIRSN-PIAQNWFGDVKQ--ITIPTYGKGIDLVLLMMQLAKRNINSIWVES 302
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L L+ G VDEL++Y++P ++GE A + +P L +F I+ I D+
Sbjct: 303 GPTLAGTLLTLGLVDELIVYVAPKILGESARGLINIPELQKLKDASAFEFINIELIDIDL 362
Query: 347 RILAR 351
R+ R
Sbjct: 363 RLTLR 367
>gi|121997691|ref|YP_001002478.1| riboflavin biosynthesis protein RibD [Halorhodospira halophila SL1]
gi|121589096|gb|ABM61676.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Halorhodospira halophila SL1]
Length = 371
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 133/344 (38%), Positives = 210/344 (61%), Gaps = 10/344 (2%)
Query: 16 PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFG 75
PNPRVGCV+V++ +++ + GG HAE AL A + +T Y+TLEPC+++G
Sbjct: 30 PNPRVGCVLVRDGSVLAEAAHEQAGGPHAEAAALQAAGGA---AHGATAYVTLEPCAHYG 86
Query: 76 YTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFF 135
TPPC ALI +G+ +V++ DPNP V+G G+AQL +AG++V +G++ +A +N GF
Sbjct: 87 RTPPCARALIDAGVSRVVVGHRDPNPRVAGGGIAQLEAAGVAVTEGVLAADAEALNRGFL 146
Query: 136 SRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLK 195
RM G PWVR+K+A+SLD +T++ + S WITS +R D H RA + A+LTG+GTV
Sbjct: 147 RRMAGGRPWVRVKLAASLDGRTAMASGESHWITSAAARRDVHRGRAEAAAVLTGVGTVRA 206
Query: 196 DNPRLNVRSIKTS----HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDL--PMKRKIL 249
D+PRL+ R ++ + QP R+V+D L P + + G + + + + L
Sbjct: 207 DDPRLDARDVEPAVPAERQPQRVVLDPRLTTPPHAALFQAPGPVLIGHAEYVNEARARAL 266
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
G E++ LP G +DL AV+ L R+INE+ +EAG L + + G DEL++Y +
Sbjct: 267 RSCGAELLPLPLQEGGLDLAAVLDALAAREINEVWVEAGPTLAGSWVRGGWADELIVYTA 326
Query: 310 PILIGEAYN-MFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
P L+G+A + LP ++ ++ L F +++++G +IRI AR
Sbjct: 327 PHLMGDAARPLLALPGIETMAQRQPLAFSDVRRVGEEIRITARL 370
>gi|441504652|ref|ZP_20986645.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Photobacterium sp. AK15]
gi|441427751|gb|ELR65220.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Photobacterium sp. AK15]
Length = 375
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 142/368 (38%), Positives = 228/368 (61%), Gaps = 21/368 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCVI + I+ GY G HAE+ AL A G
Sbjct: 10 MLRAIKLAKRGRFTTAPNPNVGCVIAHGEDIVGEGYHYQAGQPHAEVFAL---RAAGEKA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +T Y+TLEPCS++G TPPC EAL+K+ + +V+ A+ DPNP V+G+G+ L AGI V+
Sbjct: 67 HGATAYVTLEPCSHYGRTPPCAEALVKAQVSRVVCAMVDPNPRVAGRGIKMLRDAGIEVQ 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ E++++N+GF RM+ G+P+V++K+A+SLD +T+L N S+WIT ++R D +
Sbjct: 127 IGLLEAESHQLNVGFIKRMKTGMPFVQLKLAASLDGRTALANGESKWITGPDARADVQRF 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR +++ S+ QPYR+V+DS R+ P R
Sbjct: 187 RAQAGAILSTSATVLADDPSLNVRWSELGETVQNSYPESSLRQPYRVVVDSQNRVTPEHR 246
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIV--LPNNLGKVDLQAVIIELGKRKINELHI 285
+ G+ T L ++ + +++V + ++ +VDL+A++ EL + IN + +
Sbjct: 247 LFDLPGNIYLARTSL--GDEVWPEAVEQLVVPAVGDDNQQVDLEALLRELAGKDINHIWV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG L AL+ G VDEL+LY +P L+G ++ + L ++ + +L +++ +GP
Sbjct: 305 EAGAGLGGALLSAGLVDELILYQAPKLMGSDSRGLVDLNGLTAMTQVPELDITDVRMVGP 364
Query: 345 DIRILARF 352
DIRI AR
Sbjct: 365 DIRITARI 372
>gi|395651520|ref|ZP_10439370.1| riboflavin biosynthesis protein RibD [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 378
Score = 248 bits (633), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 135/369 (36%), Positives = 207/369 (56%), Gaps = 33/369 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 16 MARALELARNGLYTTHPNPRVGCVIVRDGQIVGEGWHVRTGEPHAEVHALR---AAGDKA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G+TPPC +AL+ +G+ +V+ A+ D NP V+G+G+ +L AGI V
Sbjct: 73 RGATAYVTLEPCSHYGHTPPCADALVSAGVARVVAAMQDSNPDVAGRGMQRLAQAGIDVY 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R
Sbjct: 133 SGVLEGEARALNKGFLKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQRL 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA + +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 193 RAEASVVLTGADTVLADGARLTVRAAELGLNAETTALAMSRPPLRVLIDGRLRVPLNAPF 252
Query: 226 FRVLKGGG----SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
F K G +C+ P G E +V+P G+VDL++ ++ L R +N
Sbjct: 253 F---KAGPALVITCVTAENQFPR--------GPECLVVPGVDGQVDLRSALVALAARGVN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQK 341
++ +EAG L A +G VDE +++++ +G A P L +LK E++
Sbjct: 302 DVLVEAGPSLAGAFAQQGLVDEYVIFVAGKFLGSAARPLLDWPLEKLADAPQLKITEMRA 361
Query: 342 IGPDIRILA 350
+G D R+ A
Sbjct: 362 VGDDWRVTA 370
>gi|453062459|gb|EMF03450.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Serratia marcescens VGH107]
Length = 369
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 218/365 (59%), Gaps = 20/365 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L ++PNP VGCVIV++ I+ GY G HAE+ AL A G
Sbjct: 8 MARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMA---GDKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AG+ V+
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLYKLQQAGVEVR 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N+GF RM+ G P+V++K+ +SLD +T++ + SQWITS E+R D
Sbjct: 125 HGLMLAEAEAVNLGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPEARQDVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP RI++DS RI P R
Sbjct: 185 RAQSAAILSTSATVLADDPSLTVRWDELDAETQRLYPRENLRQPLRILLDSQNRITPQHR 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G+ + A ++ +D+ E + P + G VDL +++ L KR++N + +EA
Sbjct: 245 VVQQPGAT-WLARLQADEQAWPQDV--EQFICPAHGGGVDLVVMMMLLAKRQVNSIWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL+LYI+P L+G+ + LP L + F +++++GPD+
Sbjct: 302 GASLAGALLQAGLVDELILYIAPKLLGDNGRGLCHLPGLERLADAPEFVFSDVRQVGPDL 361
Query: 347 RILAR 351
R+ R
Sbjct: 362 RLRLR 366
>gi|421496504|ref|ZP_15943732.1| ribD [Aeromonas media WS]
gi|407184492|gb|EKE58321.1| ribD [Aeromonas media WS]
Length = 360
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 145/368 (39%), Positives = 212/368 (57%), Gaps = 25/368 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A+ ++PNP VG V+VK ++ G+ K G HAE+ AL A G +
Sbjct: 1 MSRALELARRGRYTTAPNPCVGAVLVKAGVVVGEGWHKRAGEPHAEVYAL---HAAGEEA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALIK+G+ +V+ A+ DPNP V G+G+ L AGI
Sbjct: 58 RGATAYVTLEPCSHHGRTPPCAEALIKAGVTRVVAAMVDPNPQVGGRGLRMLSEAGIKTD 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA +N GFF RM+ P V +K+ +SLD +T++ + SQWITS E+R D
Sbjct: 118 FGLLSAEAEALNPGFFKRMRTAFPQVTVKLGASLDGRTAMASGESQWITSPEARRDVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RAR A+L+ TVL D L VR S+K S+ QP R+++DS R+ P
Sbjct: 178 RARHDAVLSSAETVLADGASLTVRWDELPASVKASYPKETLRQPLRVIVDSQNRLTPDLP 237
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEV--IVLPNNLGKVDLQAVIIELGKRKINELHI 285
+ + G + + K+ + V + LP GK+DL ++ + L K+ IN + +
Sbjct: 238 LFQSEGPVLLA------RHKVDGEWPAWVQQLTLPLLDGKLDLVSLFMLLAKQNINSVLV 291
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG +L AL+ +G VDEL+LY +P L+G E +F LP L + KL +++ +GP
Sbjct: 292 EAGPRLCGALLEKGLVDELVLYQAPKLMGDEGRGLFHLPGLTRLFQAPKLTLKDVRMVGP 351
Query: 345 DIRILARF 352
DIRI A+
Sbjct: 352 DIRITAKI 359
>gi|148244868|ref|YP_001219562.1| bifunctional riboflavin biosynthesis protein RibD [Candidatus
Vesicomyosocius okutanii HA]
gi|146326695|dbj|BAF61838.1| bifunctional riboflavin biosynthesis protein RibD [Candidatus
Vesicomyosocius okutanii HA]
Length = 349
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 148/361 (40%), Positives = 212/361 (58%), Gaps = 34/361 (9%)
Query: 1 MTLALQ---QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGY 57
MT+A++ Q + + S NP VGCVIVK +II+ GY +S G H EI+AL Y
Sbjct: 13 MTIAIKLALQGRYGVKS--NPMVGCVIVKHSKIIAKGYHESFGQAHGEINALQQI---NY 67
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+ +T+Y+TLEPCS+ G TP C +A+I SG+KKVIIA+ DPNPLV+GKGV L AGI
Sbjct: 68 KAHGATLYVTLEPCSHQGKTPSCAQAIINSGVKKVIIAMLDPNPLVNGKGVVMLKYAGIE 127
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
VK GL++ +A +N GF RMQ P++R K+A S+D KTS+ + S+WITSK +R D
Sbjct: 128 VKIGLLKNDASILNQGFIKRMQTNQPFIRCKVAMSIDGKTSMSSGESKWITSKVARLDVQ 187
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI-DPFFRVLKGGGSCI 236
RA AI+TG GT++ DNP + VR + +P R+VIDS +I D +
Sbjct: 188 KLRANHQAIITGSGTIINDNPLMTVRLDGVNSKPLRVVIDSKNQITDTSLNIFN------ 241
Query: 237 FTATDLPMKRKILEDLGHEVIVLPNNL-----GKVDLQAVIIELGKRKINELHIEAGYQL 291
TD P +I+ P+N GK+DL V+ +LG + IN + +EAG +L
Sbjct: 242 ---TDAP-----------TLILNPDNTKVLASGKLDLSNVLTQLGNQGINNVLLEAGPKL 287
Query: 292 NTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
A+I +DE ++Y++PIL+G N + KIKL +++ +G +I+I A
Sbjct: 288 IGAMIKINLIDEFIIYMAPILMGSDANSILNLVIKDMSYKIKLDIVDVRMVGDNIKITAT 347
Query: 352 F 352
Sbjct: 348 L 348
>gi|397169883|ref|ZP_10493310.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Alishewanella aestuarii B11]
gi|396088411|gb|EJI85994.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Alishewanella aestuarii B11]
Length = 382
Score = 248 bits (632), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 147/366 (40%), Positives = 218/366 (59%), Gaps = 30/366 (8%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNA--AAQGYDVYNSTVY 65
A+ + PNP VG ++VK+ +++ G+ + GG HAE+ AL A AA+G +T Y
Sbjct: 19 AQGRFTTDPNPNVGALVVKDGQVLGEGFHQQAGGPHAEVFALQQADSAARG-----ATCY 73
Query: 66 ITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQK 125
+TLEPC+++G TPPC EAL+K+G+ +V+IA+ DPNPLV+GKGVA L AGISV GL+ +
Sbjct: 74 VTLEPCAHYGRTPPCAEALVKAGVARVVIAMLDPNPLVAGKGVAILQQAGISVAHGLLTE 133
Query: 126 EAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCA 185
EA +N GF SRM+R P++ +K+A+SLD +T+L N SQW+TS +R D +WRA+ A
Sbjct: 134 EARALNPGFLSRMERQRPYLYLKLAASLDGRTALANGQSQWLTSDAARADVQLWRAQVSA 193
Query: 186 ILTGIGTVLKDNPRLNVRSIKTS----------------HQPYRIVIDSYLRI---DPFF 226
IL+ TVL D RL VR + QP R+++D R+ +P F
Sbjct: 194 ILSTASTVLADAARLTVRQSSDAAAEPAALIRPLADGSLRQPLRVILDRQQRLSGNEPLF 253
Query: 227 RVLKGGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
+GG + A D P K + + ++ + + G++DL ++ L R+IN L
Sbjct: 254 N--EGGPVLLCYAADAAPRKLAVTKVTVEQLPLALSADGQLDLVQLLTRLAARQINSLWT 311
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG L +L+ G VDELLLY +P+L+GE + L L + KL F+E+ +GP
Sbjct: 312 EAGAILAGSLLKAGLVDELLLYQAPLLLGEQGRPLAVLGDFQQLAQTPKLAFNEVISLGP 371
Query: 345 DIRILA 350
D+R+ A
Sbjct: 372 DLRLRA 377
>gi|344200811|ref|YP_004785137.1| riboflavin biosynthesis protein RibD [Acidithiobacillus ferrivorans
SS3]
gi|343776255|gb|AEM48811.1| riboflavin biosynthesis protein RibD [Acidithiobacillus ferrivorans
SS3]
Length = 367
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 131/343 (38%), Positives = 202/343 (58%), Gaps = 7/343 (2%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++ PNP VG V+VK+ ++ G G HAE+ AL A G+ +T Y+TLEPCS
Sbjct: 24 STHPNPCVGAVLVKDGFVVGRGAHLQAGKAHAEMFALAEA---GHAARGATAYVTLEPCS 80
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC +ALI +G+ +V+IA+ DPNPLV+G+GV +L +AG+ V++G + A +N
Sbjct: 81 HQGRTPPCADALIAAGVARVVIAMRDPNPLVAGRGVERLRAAGVVVEEGCLAAAAEALNP 140
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF RM+ G PW+R+K A SLD + +L N SQW+T +R D RAR+ AIL GIGT
Sbjct: 141 GFLQRMRHGRPWMRLKQAMSLDGRVALANGQSQWLTGAAARADVQQERARASAILVGIGT 200
Query: 193 VLKDNPRLNVR-SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IFTATDLP-MKRKIL 249
VL DNPRL R ++ P +IV+D++LR P + G+ I D P ++ L
Sbjct: 201 VLADNPRLAPRLAVAPQRYPVKIVLDTHLRTPPDAALFSTPGAVWICHYQDAPSAAQEAL 260
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
G E++ ++ Q V+ L +R++N++ +EAG + +L G VDE LLY++
Sbjct: 261 RAAGAELLSCRGTGARLGWQEVMTMLAQREMNDILVEAGPGIAASLFTAGLVDEWLLYVA 320
Query: 310 PILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
P+L+G+ A + P+ +L + + ++G D++ R
Sbjct: 321 PLLLGQDARPVLVTGPYVNLAEVPRWSVINTTQLGDDVKWTLR 363
>gi|15602614|ref|NP_245686.1| hypothetical protein PM0749 [Pasteurella multocida subsp. multocida
str. Pm70]
gi|12721046|gb|AAK02833.1| RibD [Pasteurella multocida subsp. multocida str. Pm70]
Length = 376
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 211/364 (57%), Gaps = 23/364 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ A K ++PNP VGCV+VK+ I+ G+ G HAE+ AL A G +
Sbjct: 12 MQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMALREA---GENA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + LI +G+ KV+ A+ DPNP V+G+G++ L AGI
Sbjct: 69 RGATAYVTLEPCSHFGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLSMLSDAGIESA 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ ++A +N GF RM+ G P+V++K+A SLD +T++ N S+WIT + +R D
Sbjct: 129 VGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELARADVQAE 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR +K + QP R+++DS R+ P R
Sbjct: 189 RAKASAILSTSATVLADDPLLNVRWQQLPDKVKADYTQAQLRQPVRVILDSQHRVQPSHR 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
+ + R +LE H E I L + L ++ ELG+R+IN L IE
Sbjct: 249 LFSLSSPVWLVSQ---TARSLLEFPAHCEQIQLSASTNA--LADLMAELGQRQINTLWIE 303
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKL-KFHEIQKIGPD 345
AG L ALI VDEL++YI+P L+G+A PH S + L + H I+K+G D
Sbjct: 304 AGATLAGALIEAKLVDELIIYIAPKLLGDAARGLCKLPHLSTLAEASLWQLHSIEKLGDD 363
Query: 346 IRIL 349
++ +
Sbjct: 364 LKTI 367
>gi|261346387|ref|ZP_05974031.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM
4541]
gi|282565705|gb|EFB71240.1| riboflavin biosynthesis protein RibD [Providencia rustigianii DSM
4541]
Length = 371
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 133/356 (37%), Positives = 209/356 (58%), Gaps = 18/356 (5%)
Query: 9 KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITL 68
K +SPNP VGCVIV++ ++ GY + G HAE+ AL A G +T Y+TL
Sbjct: 18 KGRFTTSPNPNVGCVIVRDGEVVGEGYHQKAGEPHAEVHALRMA---GDKARGATAYVTL 74
Query: 69 EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAY 128
EPCS+ G TPPC EALIK+G+ +V+ ++ DPNP V+G+G+ L AGI ++ ++A
Sbjct: 75 EPCSHHGRTPPCAEALIKAGVSRVVASMQDPNPQVAGRGLYMLSQAGIETSSNILLEQAE 134
Query: 129 EINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILT 188
+N GF RM+ P++++K+A+SLD KT+L + S+WITS +R D + RA++ AIL+
Sbjct: 135 ALNRGFLKRMRTAFPYIQLKLAASLDGKTALESGESKWITSPAARKDVQVLRAQASAILS 194
Query: 189 GIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCI 236
TV+ D+P L VR I+ + QP RIV+D + ++ P +V + G C
Sbjct: 195 TSNTVIADDPALTVRWSELPSDIQQEYPEDQLRQPIRIVLDRHNKVTPEHQVTQLAGEC- 253
Query: 237 FTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
+ P + +V +L + G +DL ++++L KR IN + +EAG L +L+
Sbjct: 254 WLIRPTPDNEVTWQGQVEQVPILADENG-IDLVILMMQLAKRNINSIWVEAGPTLAGSLL 312
Query: 297 LEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G VDEL++YI+P L+G+ A + P SL +F +++K+G D+R+ R
Sbjct: 313 KLGLVDELIVYIAPKLLGDTARGLVNFPALKSLSDAPNFEFTDVEKVGNDLRVRLR 368
>gi|117619328|ref|YP_857822.1| riboflavin biosynthesis protein RibD [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560735|gb|ABK37683.1| riboflavin biosynthesis protein RibD [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 369
Score = 247 bits (631), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 214/370 (57%), Gaps = 29/370 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A+ ++PNP VG V+VK ++ G+ + G HAE+ AL A G +
Sbjct: 10 MSRALELARRGRYTTAPNPCVGAVLVKAGVVVGEGWHQRAGEPHAEVYAL---HAAGDNA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALIK+G+ +V+ A+ DPNP V G+G+ L AGI
Sbjct: 67 RGATAYVTLEPCSHHGRTPPCAEALIKAGVTRVVAAMVDPNPQVGGRGLRMLSEAGIKTD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA +N GFF RM+ P V +K+ +SLD +T++ + SQWITS E+R D
Sbjct: 127 FGLLASEAEALNPGFFKRMRTAFPQVTVKLGASLDGRTAMASGESQWITSPEARRDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RAR A+L+ TVL DN L VR S+K S+ QP R+++DS R+ P
Sbjct: 187 RARHDAVLSSAETVLADNASLTVRWDELPASVKASYPKETLRQPLRVIVDSQNRLTPDLP 246
Query: 228 VLKGGGSCIF----TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINEL 283
+L+ G + + + P + LE +P GK+DL ++ + L K+ +N +
Sbjct: 247 LLQSEGPVLLARHKASGEWPAWVQQLE--------VPLLDGKLDLVSLFMLLAKQNVNSV 298
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKI 342
+EAG +L AL+ +G VD+L+LY +P L+G E +F LP L + KL +++ +
Sbjct: 299 LVEAGPRLCGALLDKGLVDDLVLYQAPKLMGDEGRGLFHLPGLTRLFQAPKLNIKDVRMV 358
Query: 343 GPDIRILARF 352
GPDIRI AR
Sbjct: 359 GPDIRITARL 368
>gi|399543751|ref|YP_006557059.1| riboflavin biosynthesis protein RibD [Marinobacter sp. BSs20148]
gi|399159083|gb|AFP29646.1| Riboflavin biosynthesis protein RibD [Marinobacter sp. BSs20148]
Length = 371
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 147/364 (40%), Positives = 209/364 (57%), Gaps = 16/364 (4%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q A + ++ PNPRVGCVI + RI+ + + G HAE+ AL A G
Sbjct: 10 MARAVQLAWRGRYSTHPNPRVGCVIARGDRILGESWHERAGEAHAEVRALSLA---GTAA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST Y+TLEPCS+FG TPPC +ALI++G+ +V A DPNP VSG+G+ L +AGI V
Sbjct: 67 RGSTAYVTLEPCSHFGRTPPCAKALIEAGVARVFAATLDPNPNVSGRGLDMLRAAGIRVH 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA ++N GF RM G PWVR+K+A+SLD +T++ + SQWIT ESR+D
Sbjct: 127 VGLLAGEAAKLNPGFMKRMTSGRPWVRLKMAASLDGRTAMASGESQWITGPESRSDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR---------SIKTSHQPYRIVIDSYLRIDPFFRVLK 230
RA S AILTG+GTVL D+P L VR + + QP R++ D R ++ +
Sbjct: 187 RAMSDAILTGVGTVLADDPSLTVRREEMGDIGSATEPGRQPLRVIADRDTRTPASAKIFR 246
Query: 231 GGGSCIF--TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
GG +F TA+ + L LG + + + V++ ++ LG INE+ +EAG
Sbjct: 247 GGKVQVFCATASLATSAAQDLAALGIRLRGVAWHDKGVNVAEMLDTLGDIGINEVLVEAG 306
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR- 347
L + I E VDEL LY +P+ +G P S+ KI+ + + +++G D R
Sbjct: 307 PTLAGSFISENLVDELWLYQAPVFLGSTGRPTANLPLESMADKIQWQVLDRRQLGADQRL 366
Query: 348 ILAR 351
ILAR
Sbjct: 367 ILAR 370
>gi|365175133|ref|ZP_09362571.1| riboflavin biosynthesis protein RibD [Synergistes sp. 3_1_syn1]
gi|363613998|gb|EHL65503.1| riboflavin biosynthesis protein RibD [Synergistes sp. 3_1_syn1]
Length = 364
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 139/352 (39%), Positives = 199/352 (56%), Gaps = 6/352 (1%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVY 60
M AL+ A+ SPNPRVGCV+V++ II G+ K GG HAE++A+ +A G D+
Sbjct: 13 MNCALELARNGRRCSPNPRVGCVVVRDGVIIGRGWHKICGGPHAEVEAVRDA---GGDIA 69
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
+ VY+TLEPCS++G TPPC + L ++V+ + DPNP V+G+G+ +L +AG+ VK
Sbjct: 70 EADVYVTLEPCSHYGRTPPCADMLAAHRPRRVVAGMADPNPRVAGRGLEKLRAAGVEVKC 129
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
GL++ E +N GF RM G PWV +K A+SLD KT+L S+WIT ESR H R
Sbjct: 130 GLLEDECRWMNRGFIRRMSMGRPWVTVKCAASLDGKTALAGGESKWITGVESRARVHAMR 189
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT 240
A S A+LTG+GTV+ D+P L VR P R+++D LR P ++L GG T
Sbjct: 190 AESDAVLTGVGTVIADDPLLTVRD-APGETPRRVILDRSLRTPPRAKILAGGAVIFTTEA 248
Query: 241 DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
K L + G + +P+ G L AV+ L +N L +EAG + +A I EG
Sbjct: 249 APAAKASALAEAGARIETVPS--GASFLGAVLKRLCAMDVNYLMVEAGAGVTSAFIGEGL 306
Query: 301 VDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
DEL L+++P +IG + ++ L+ E K G D+ I F
Sbjct: 307 CDELALFVAPKIIGRGPSFADGLAFSNMAAVPCLRDAEYTKCGEDLLIRGVF 358
>gi|417855851|ref|ZP_12500912.1| hypothetical protein AAUPMG_04557 [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338215281|gb|EGP01578.1| hypothetical protein AAUPMG_04557 [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 375
Score = 247 bits (631), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 211/364 (57%), Gaps = 23/364 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ A K ++PNP VGCV+VK+ I+ G+ G HAE+ AL A G +
Sbjct: 11 MQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMALREA---GENA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + LI +G+ KV+ A+ DPNP V+G+G++ L AGI
Sbjct: 68 RGATAYVTLEPCSHFGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLSMLSDAGIESA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ ++A +N GF RM+ G P+V++K+A SLD +T++ N S+WIT + +R D
Sbjct: 128 VGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELARADVQAE 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR +K + QP R+++DS R+ P R
Sbjct: 188 RAKASAILSTSATVLADDPLLNVRWQQLPDKVKADYTQAQLRQPVRVILDSQHRVQPSHR 247
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
+ + R +LE H E I L + L ++ ELG+R+IN L IE
Sbjct: 248 LFSLSSPVWLVSQ---TARSLLEFPAHCEQIQLSASTNA--LADLMAELGQRQINTLWIE 302
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKL-KFHEIQKIGPD 345
AG L ALI VDEL++YI+P L+G+A PH S + L + H I+K+G D
Sbjct: 303 AGATLAGALIEAKLVDELIIYIAPKLLGDAARGLCKLPHLSTLAEASLWQLHSIEKLGDD 362
Query: 346 IRIL 349
++ +
Sbjct: 363 LKTI 366
>gi|417850670|ref|ZP_12496526.1| hypothetical protein GEW_04762 [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338220474|gb|EGP05979.1| hypothetical protein GEW_04762 [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 376
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 211/364 (57%), Gaps = 23/364 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ A K ++PNP VGCV+VK+ I+ G+ G HAE+ AL A G +
Sbjct: 12 MQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMALREA---GENA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + LI +G+ KV+ A+ DPNP V+G+G++ L AGI
Sbjct: 69 RGATAYVTLEPCSHFGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLSMLSDAGIESA 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ ++A +N GF RM+ G P+V++K+A SLD +T++ N S+WIT + +R D
Sbjct: 129 VGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELARADVQAE 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR +K + QP R+++DS R+ P R
Sbjct: 189 RAKASAILSTSATVLADDPLLNVRWQQLPDKVKADYTQAQLRQPVRVILDSQHRVQPSHR 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
+ + R +LE H E I L + L ++ ELG+R+IN L IE
Sbjct: 249 LFSLSSPVWLVSQ---TARSLLEFPAHCEQIQLSASANA--LADLMAELGQRQINTLWIE 303
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKL-KFHEIQKIGPD 345
AG L ALI VDEL++YI+P L+G+A PH S + L + H I+K+G D
Sbjct: 304 AGATLAGALIEARLVDELIIYIAPKLLGDAARGLCKLPHLSTLAEASLWQLHSIEKLGDD 363
Query: 346 IRIL 349
++ +
Sbjct: 364 LKTI 367
>gi|416047285|ref|ZP_11575985.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|347994201|gb|EGY35506.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
Length = 374
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 141/369 (38%), Positives = 212/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK +I+ G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + L ++G+ KVI A+ DPNP V+GKG+ L AGI
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCAKGLAEAGVSKVIAAMYDPNPQVAGKGLQILADAGIQSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A ++N GF RM+ G P+V++K+A S+D KT++ + S+WIT ++R D +
Sbjct: 130 VGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMDVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR + + QP R+++DS ++ F+
Sbjct: 190 RAKASAILSTSQTVLADDPSLNVRWAELPNETQARYAQENLRQPVRVILDSTHKVRSDFK 249
Query: 228 VLKG------GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
V G F T P + L+ L + G+ LQA++ ELGKR+IN
Sbjct: 250 VFLTDAPVWLAGEDDFQLTGFPASTEYLK--------LDRSHGESRLQALMTELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQ 340
L +EAG L ALI E VDEL++Y++P L+G+ A ++ LP L + +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDHARDLCHLPHLTRLADAPLWQLQSCE 361
Query: 341 KIGPDIRIL 349
G D++++
Sbjct: 362 PTGDDLKLI 370
>gi|167031576|ref|YP_001666807.1| riboflavin biosynthesis protein RibD [Pseudomonas putida GB-1]
gi|166858064|gb|ABY96471.1| riboflavin biosynthesis protein RibD [Pseudomonas putida GB-1]
Length = 376
Score = 247 bits (630), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 205/363 (56%), Gaps = 20/363 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GERA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 70 IGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLQRLAEAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 130 SGVLETEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +LT +VL DN R+ VR ++ S P R+++DS LR+
Sbjct: 190 RARSSVVLTSAASVLADNARMTVRGTELGLDAETTALALSRTPLRVLVDSRLRLPLDAAF 249
Query: 229 LKGGGSCIFTA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+ G + + A D P GHE++ LP + G+VDL A++ L R +NE+ +EA
Sbjct: 250 FQAGPALVVAAVADDPRYAAA----GHELLSLPGDNGQVDLPALLQALAARGVNEILLEA 305
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
G L A +G VDE L+++ +G P + + +LK E++ +G D R
Sbjct: 306 GAGLVGAFAQQGLVDEYQLFVAGTFLGSQARPLLDWPLGKMSEAPRLKITEMRAVGDDWR 365
Query: 348 ILA 350
+ A
Sbjct: 366 VTA 368
>gi|153826812|ref|ZP_01979479.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-2]
gi|149739399|gb|EDM53641.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-2]
Length = 367
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 138/353 (39%), Positives = 212/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELG-KRKINELHIEAGYQLNTALILE 298
T P+ R E+ E+ + N GK+DL+ ++ +L K +N+L +EAG QL +LI +
Sbjct: 252 TPSPVLRVASENA--ELCISAEN-GKLDLRELLAQLAQKHNVNQLWVEAGSQLAKSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|383191267|ref|YP_005201395.1| riboflavin biosynthesis protein RibD [Rahnella aquatilis CIP 78.65
= ATCC 33071]
gi|371589525|gb|AEX53255.1| riboflavin biosynthesis protein RibD [Rahnella aquatilis CIP 78.65
= ATCC 33071]
Length = 382
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 134/352 (38%), Positives = 203/352 (57%), Gaps = 23/352 (6%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
++PNP VGCVIV I+ GY G HAE+ AL A G +T Y+TLEPC
Sbjct: 33 FTTTPNPNVGCVIVLNGEIVGEGYHLRAGEPHAEVHALRMA---GEKAKGATAYVTLEPC 89
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +AL+ +GI +V+ A+ DPNP V+G+G+ +L G+ V GLM +A +N
Sbjct: 90 SHHGRTPPCADALLAAGIARVVAAMQDPNPEVAGRGLYRLKQNGVDVSHGLMHPQAEAVN 149
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
+GF RM+ G P+V++K+ +S+D +T++ + SQWITS +R D +RA S AIL+
Sbjct: 150 LGFLKRMRTGFPYVQLKMGASIDGRTAMASGESQWITSAAARADVQRFRAESSAILSTSA 209
Query: 192 TVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFT- 238
TVL DNP LNVR K QP RI++DS R+ P +++ G
Sbjct: 210 TVLADNPSLNVRWSELGSDVQAIYPEKNLRQPLRIILDSQNRVTPQHQLMNLPGEVWLAR 269
Query: 239 -ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
TD + + +E + ++DL ++++L KR+IN + +EAG QL AL+
Sbjct: 270 LETDTQVWPESVEQW-----RVAGRDNRIDLVLLMMQLAKRQINCIWVEAGAQLAGALLQ 324
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDEL++Y++P L+G+ + LP L + F +I+++GPD+R+
Sbjct: 325 AGLVDELIVYMAPKLLGDNGRALCELPGLQHLADAPEFIFSDIRQVGPDLRL 376
>gi|229513912|ref|ZP_04403374.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae TMA 21]
gi|229349093|gb|EEO14050.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae TMA 21]
Length = 367
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 214/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+ GL++++A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGLLEEDARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ E+ + N GK+DL+ ++ +L ++ +N+L +EAG QL +LI +
Sbjct: 252 TPSPVLRVASENA--ELCISAEN-GKLDLRELLAQLAQQHNVNQLLVEAGSQLAQSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|254226773|ref|ZP_04920347.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V51]
gi|125620711|gb|EAZ49071.1| riboflavin biosynthesis protein RibD [Vibrio cholerae V51]
Length = 367
Score = 247 bits (630), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 212/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+ GL+ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGLLDADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + + S + A
Sbjct: 201 TVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQTPSSVLRVA 260
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRK-INELHIEAGYQLNTALILE 298
++ E+ + N GK+DL+ ++ +L +++ +N++ +EAG QL +LI +
Sbjct: 261 SE-----------NAELCISAKN-GKLDLRELLAQLAQQQNVNQVWVEAGSQLAQSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|416054265|ref|ZP_11579136.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416070103|ref|ZP_11583546.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|444334408|ref|ZP_21149962.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|347999308|gb|EGY40151.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348003609|gb|EGY44182.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|443550439|gb|ELT58738.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 374
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 141/369 (38%), Positives = 212/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK +I+ G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + L ++G+ KVI A+ DPNP V+GKG+ L AGI
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCAKGLAEAGVSKVIAAMCDPNPQVAGKGLQILADAGIQSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A ++N GF RM+ G P+V++K+A S+D KT++ + S+WIT ++R D +
Sbjct: 130 VGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMDVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR + + QP R+++DS ++ F+
Sbjct: 190 RAKASAILSTSQTVLADDPSLNVRWAELPNETQARYAQENLRQPVRVILDSTHKVRSDFK 249
Query: 228 VLKG------GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
V G F T P + L+ L + G+ LQA++ ELGKR+IN
Sbjct: 250 VFLTDAPVWLAGEDDFQLTGFPASTEYLK--------LDRSHGESRLQALMTELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQ 340
L +EAG L ALI E VDEL++Y++P L+G+ A ++ LP L + +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDHARDLCHLPHLTRLADAPLWQLQSCE 361
Query: 341 KIGPDIRIL 349
G D++++
Sbjct: 362 PTGDDLKLI 370
>gi|365967570|ref|YP_004949132.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416089017|ref|ZP_11587862.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|444349221|ref|ZP_21156720.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|348009444|gb|EGY49592.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|365746483|gb|AEW77388.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443545175|gb|ELT55023.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 374
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 213/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK +I+ G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + L+++G+ KVI A+ DPNP V+GKG+ L AGI
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILADAGIQSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A ++N GF RM+ G P+V++K+A S+D KT++ + S+WIT ++R D +
Sbjct: 130 VGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMDVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA++ A+L+ TVL D+P LNVR + + QP R+++DS ++ F+
Sbjct: 190 RAKASAMLSTSQTVLADDPSLNVRWAELPNETQARYIQENLRQPVRVILDSTHKVRSDFK 249
Query: 228 VLKG------GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
V G F T P + L+ L + G+ LQA++ ELGKR+IN
Sbjct: 250 VFLTDAPVWLAGEDDFQLTGFPASTEYLK--------LDRSHGESRLQALMTELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQ 340
L +EAG L ALI E VDEL++Y++P L+G+ A ++ LP L + +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDHAKDLCHLPHLTRLADAPLWQLQSCE 361
Query: 341 KIGPDIRIL 349
G D++++
Sbjct: 362 PTGDDLKLI 370
>gi|416073967|ref|ZP_11584383.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444344155|ref|ZP_21152452.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|348007027|gb|EGY47373.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|443544671|gb|ELT54616.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
Length = 374
Score = 247 bits (630), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 213/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK +I+ G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + L+++G+ KVI A+ DPNP V+GKG+ L AGI
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILADAGIQSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A ++N GF RM+ G P+V++K+A S+D KT++ + S+WIT ++R D +
Sbjct: 130 VGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMDVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA++ A+L+ TVL D+P LNVR + + QP R+++DS ++ F+
Sbjct: 190 RAKASAMLSTSQTVLADDPSLNVRWAELPNETQARYVQENLRQPVRVILDSTHKVRSDFK 249
Query: 228 VLKG------GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
V G F T P + L+ L + G+ LQA++ ELGKR+IN
Sbjct: 250 VFLTDAPVWLAGEDDFQLTGFPASTEYLK--------LDRSHGESRLQALMTELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQ 340
L +EAG L ALI E VDEL++Y++P L+G+ A ++ LP L + +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDHAKDLCHLPHLTRLADAPLWQLQSCE 361
Query: 341 KIGPDIRIL 349
G D++++
Sbjct: 362 PTGDDLKLI 370
>gi|383310423|ref|YP_005363233.1| riboflavin biosynthesis protein RibD [Pasteurella multocida subsp.
multocida str. HN06]
gi|380871695|gb|AFF24062.1| riboflavin biosynthesis protein RibD [Pasteurella multocida subsp.
multocida str. HN06]
Length = 375
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 211/364 (57%), Gaps = 23/364 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ A K ++PNP VGCV+VK+ I+ G+ G HAE+ AL A G +
Sbjct: 11 MQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMALREA---GENA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + LI +G+ KV+ A+ DPNP V+G+G++ L AGI
Sbjct: 68 RGATAYVTLEPCSHFGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLSMLSDAGIESA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ ++A +N GF RM+ G P+V++K+A SLD +T++ N S+WIT + +R D
Sbjct: 128 VGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELARADVQAE 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR +K + QP R+++DS R+ P R
Sbjct: 188 RAKASAILSTSATVLADDPLLNVRWQQLPDKVKADYTQAQLRQPVRVILDSQHRVQPSRR 247
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
+ + R +LE H E I L + L ++ ELG+R+IN L IE
Sbjct: 248 LFSLSSPVWLVSQ---TARSLLEFPAHCEQIQLSASTNA--LADLMAELGQRQINTLWIE 302
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKL-KFHEIQKIGPD 345
AG L ALI VDEL++YI+P L+G+A PH S + L + H I+K+G D
Sbjct: 303 AGATLAGALIEAKLVDELIIYIAPKLLGDAARGLCKLPHLSTLAEASLWQLHSIEKLGDD 362
Query: 346 IRIL 349
++ +
Sbjct: 363 LKTI 366
>gi|261867792|ref|YP_003255714.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415768374|ref|ZP_11483676.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|261413124|gb|ACX82495.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348657943|gb|EGY75521.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans D17P-2]
Length = 374
Score = 246 bits (629), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 213/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK +I+ G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + L+++G+ KVI A+ DPNP V+GKG+ L AGI
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILADAGIQSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A ++N GF RM+ G P+V++K+A S+D KT++ + S+WIT ++R D +
Sbjct: 130 VGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMDVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA++ A+L+ TVL D+P LNVR + + QP R+++DS ++ F+
Sbjct: 190 RAKASAMLSTSQTVLADDPSLNVRWAELPNETQARYVQENLRQPVRVILDSTHKVRSDFK 249
Query: 228 VLKG------GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
V G F T P + L+ L + G+ LQA++ ELGKR+IN
Sbjct: 250 VFLTDAPVWLAGEDDFQLTGFPTSTEYLK--------LDRSHGESRLQALMTELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQ 340
L +EAG L ALI E VDEL++Y++P L+G+ A ++ LP L + +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDHAKDLCHLPHLTRLADAPLWQLQSCE 361
Query: 341 KIGPDIRIL 349
G D++++
Sbjct: 362 PTGDDLKLI 370
>gi|431800568|ref|YP_007227471.1| riboflavin biosynthesis protein RibD [Pseudomonas putida HB3267]
gi|430791333|gb|AGA71528.1| riboflavin biosynthesis protein RibD [Pseudomonas putida HB3267]
Length = 376
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 208/366 (56%), Gaps = 26/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GERA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 70 RGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 130 SGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LT +VL DN R+ VR ++ S P R++ID +LR+ PF
Sbjct: 190 RARSSVVLTSATSVLADNARMTVRGAELGLDAETTALALSRTPLRVLIDGHLRLPLDAPF 249
Query: 226 FRVLKGGGSCIFTA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
F + G + + TA D P GHE++ LP + G+VDL A++ L R INE+
Sbjct: 250 F---QAGPALVVTAVADDPRYAAA----GHELLSLPGDNGQVDLSALLQALAARGINEVL 302
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
+EAG L A G +DE L+++ +G P + + +LK E++ +G
Sbjct: 303 LEAGAGLVGAFSRLGLIDEYQLFVAGTFLGSQARPLLDWPLDKMSEAPRLKITEMRAVGD 362
Query: 345 DIRILA 350
D R+ A
Sbjct: 363 DWRVTA 368
>gi|262190240|ref|ZP_06048514.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae CT 5369-93]
gi|262033885|gb|EEY52351.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio cholerae CT 5369-93]
Length = 365
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 213/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 22 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 78
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+ GL++ +A +N
Sbjct: 79 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGLLEADARALN 138
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 139 RGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 198
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 199 TVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ--------- 249
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ E+ + N GK+DL+ ++ +L ++ +N+L +EAG QL +LI +
Sbjct: 250 TPSPVLRVASENA--ELCISAEN-GKLDLRELLAQLAQQHNVNQLWVEAGSQLAQSLIEQ 306
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 307 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 359
>gi|425063433|ref|ZP_18466558.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pasteurella
multocida subsp. gallicida X73]
gi|404382996|gb|EJZ79453.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pasteurella
multocida subsp. gallicida X73]
Length = 375
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 210/364 (57%), Gaps = 23/364 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ A K ++PNP VGCV+VK+ I+ G+ G HAE+ AL A G +
Sbjct: 11 MQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMALREA---GENA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + LI +G+ KV+ A+ DPNP V+G+G+ L AGI
Sbjct: 68 RGATAYVTLEPCSHFGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLRMLSDAGIESA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ ++A +N GF RM+ G P+V++K+A SLD +T++ N S+WIT + +R D
Sbjct: 128 VGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELARADVQAE 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR +K + QP R+++DS R+ P R
Sbjct: 188 RAKASAILSTSATVLADDPLLNVRWQQLPDKVKADYTQAQLRQPVRVILDSQHRVQPSHR 247
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
+ + R +LE H E I L + L ++ ELG+R+IN L IE
Sbjct: 248 LFSLSSPVWLVSQ---TARSLLEFPAHCEQIQLSASTNA--LADLMAELGQRQINTLWIE 302
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKL-KFHEIQKIGPD 345
AG L ALI VDEL++YI+P L+G+A PH S + L + H I+K+G D
Sbjct: 303 AGATLAGALIEAKLVDELIIYIAPKLLGDAARGLCKLPHLSTLAEASLWQLHSIEKLGDD 362
Query: 346 IRIL 349
++ +
Sbjct: 363 LKTI 366
>gi|343508740|ref|ZP_08746052.1| riboflavin-specific deaminase [Vibrio scophthalmi LMG 19158]
gi|342807003|gb|EGU42206.1| riboflavin-specific deaminase [Vibrio scophthalmi LMG 19158]
Length = 368
Score = 246 bits (629), Expect = 9e-63, Method: Compositional matrix adjust.
Identities = 140/366 (38%), Positives = 217/366 (59%), Gaps = 30/366 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A++ A+ I ++PNP VGCVI ++ +I+ G+ G HAE+ AL A G
Sbjct: 12 MSRAIKLAQGGIYTTAPNPNVGCVITRDDQIVGEGFHYRAGEPHAEVHALRMA---GKLA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+ + KVI A+ DPNP VSG+G+ L AGI V+
Sbjct: 69 EGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVSGRGINMLREAGIEVQ 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N F RMQ G+P+V++K+A+SLD +T+L N SQWITS ++R D +
Sbjct: 129 VGLLEADAQALNPAFIKRMQTGMPFVQLKMAASLDGQTALANGQSQWITSAQARQDVQAF 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TV++DN LNVR SI+ + QP R+++D ++ +
Sbjct: 189 RAQSGAILSTSQTVIEDNASLNVRWDDLPLSIQAHYPAEELRQPVRVILDRQNQLSADLK 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIE 286
+ + G + A G +V L N+ ++DL+A L K+ IN + +E
Sbjct: 249 LFQTAGDRLIVAP------------GGDVECLLNDEQQIDLRATFEMLAKQHNINHIWVE 296
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L +L+ + VDE++LY +P L+G + +F + + I+L E++++G D
Sbjct: 297 AGATLARSLMQQQLVDEVVLYQAPKLMGSDGRGLFGALGFQEMSQVIELDITELKQVGRD 356
Query: 346 IRILAR 351
IRILA+
Sbjct: 357 IRILAK 362
>gi|389807909|ref|ZP_10204393.1| riboflavin biosynthesis protein RibD [Rhodanobacter thiooxydans
LCS2]
gi|388443390|gb|EIL99541.1| riboflavin biosynthesis protein RibD [Rhodanobacter thiooxydans
LCS2]
Length = 353
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 146/361 (40%), Positives = 213/361 (59%), Gaps = 20/361 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVI ++ G+ + G HAE+ AL A G
Sbjct: 1 MAHALRLAEHGLYTTQPNPRVGCVIAHGDEVVGTGFHRRAGEPHAEVFALREA---GERA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC++ G TPPC + L+ +G+ +V+IA DP P V+G G+ +L +AGI+V+
Sbjct: 58 RGATAYVTLEPCAHHGRTPPCADVLVAAGVGRVVIAAEDPFPQVNGHGIGKLRAAGIAVE 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GLM++ A E+N GFFSR++RG P+VR+K+A SLD +T+L + S+WIT +R D W
Sbjct: 118 RGLMREAARELNCGFFSRIERGRPFVRVKLAMSLDGRTALASGESKWITGAAARADVQRW 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
RARS AIL+G GTVL D+P+L VR K P R+V+D LR VL G +
Sbjct: 178 RARSSAILSGSGTVLADDPQLTVRLPDDKEFLLPLRVVLDRQLRTPAGSHVLDGSAPTLL 237
Query: 238 ------TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQL 291
+ D R E + L + +DL+AV+ L R NE+H+EAG L
Sbjct: 238 LHGAAASCNDDRFARV-------ERVALAMHGDLLDLRAVLALLAGRGCNEVHVEAGPTL 290
Query: 292 NTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
AL G VDELLLY++P+L+G+ A + LPP + + +L+ + + +G D R+
Sbjct: 291 CGALFAAGLVDELLLYVAPLLLGDSARPLLRLPPLGEMARCWQLRMVDQRMLGADWRLQL 350
Query: 351 R 351
R
Sbjct: 351 R 351
>gi|290474698|ref|YP_003467578.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Xenorhabdus bovienii SS-2004]
gi|289174011|emb|CBJ80798.1| bifunctional: diaminohydroxyphosphoribosylaminopyrimidine deaminase
(N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil
reductase [Xenorhabdus bovienii SS-2004]
Length = 369
Score = 246 bits (629), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 146/367 (39%), Positives = 220/367 (59%), Gaps = 24/367 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A +SPNP VGCVIV+ I+ G+ G HAE+ AL A G
Sbjct: 8 MSRALELANQGRFTTSPNPNVGCVIVQGDHIVGEGFHVCAGEPHAEVHALRMA---GGKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +GI +V+ A+ DPNP V+G+G+ +L AGI+V+
Sbjct: 65 KGATAYVTLEPCSHHGKTPPCADALIAAGISRVVAAMQDPNPQVAGRGLYKLQQAGIAVE 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ EA +N GF RM+ G P++++K+ +SLD +T+L + S+WITS E+R D +
Sbjct: 125 HGVLMAEAEALNKGFLKRMRTGFPYLQLKMGASLDGRTALASGESKWITSPEARQDVQQF 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+ AIL+ TVL D+P L VR + QP RI++DS R+ P +
Sbjct: 185 RAQCSAILSSSATVLADDPSLTVRWHELDAEIQAIYPQEQVRQPIRIIVDSQNRVTPQHQ 244
Query: 228 VLKGGGSCIF--TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
V++ G C T TD +++ +++ H IVLP + G VDL ++++LGKR+IN +
Sbjct: 245 VVQQVGQCWLARTHTD---QQQWPDNVDH--IVLPAHGGGVDLVLLMMQLGKRQINSVWA 299
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
E G L AL+ G VDEL+LYI+P ++G A +F +P L + ++++IG
Sbjct: 300 ECGPVLAGALLSLGLVDELILYIAPKVLGNTARGLFAIPELQKLSDAPEFTLFDVRQIGS 359
Query: 345 DIRILAR 351
D+R+ R
Sbjct: 360 DVRLRLR 366
>gi|359785931|ref|ZP_09289076.1| riboflavin biosynthesis protein RibD [Halomonas sp. GFAJ-1]
gi|359296758|gb|EHK61001.1| riboflavin biosynthesis protein RibD [Halomonas sp. GFAJ-1]
Length = 389
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 145/370 (39%), Positives = 221/370 (59%), Gaps = 23/370 (6%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVK-----EKRIISCGYTKSPGGNHAEIDALLNAAA 54
M ALQ AK + + PNPRVGCVIV+ E R++ G+ S GG HAEI AL NAAA
Sbjct: 18 MARALQLAKQGLYTTDPNPRVGCVIVRYDESDEGRVVGEGFHISAGGPHAEIHAL-NAAA 76
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
G +T Y+TLEPCS+ G T PC AL ++ + +V++A+ DPNP VSG+G+ +L +
Sbjct: 77 -GL-ARGATAYVTLEPCSHTGRTGPCAVALAEAKVSRVVVAMVDPNPQVSGQGIKRLQAD 134
Query: 115 GISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRN 174
G++V GL++ +A +N GF SRMQ P+VR+K+A SLD +T++ + SQWIT E+R+
Sbjct: 135 GVTVDVGLLEADARALNPGFISRMQHKRPFVRLKMAMSLDGRTAMGSGESQWITGPEARS 194
Query: 175 DSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPF 225
RARS AIL+G+ +++ D+ RL +R+ + + QP R+++DS LR+
Sbjct: 195 QVQRLRARSSAILSGVESLIMDDSRLTLRADQLALANADEVVKRQPLRVILDSRLRLPLA 254
Query: 226 FRVLKGGGSCIFTATDL--PMKRKILEDLGHEVIVLP-NNLGKVDLQAVIIELGK-RKIN 281
L+ G + T+ KR LE G E++V P + G++ L ++ L ++N
Sbjct: 255 AACLREPGRTLLITTEQHSEEKRHKLEAAGAEIVVFPADQGGRIALADMLHWLADNEQVN 314
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILI-GEAYNMFTLPPHYSLDKKIKLKFHEIQ 340
EL +E G L AL+ V+EL L+++P L+ GEA +F LP + + +L E++
Sbjct: 315 ELLVETGATLAGALLDANLVNELQLFVAPTLLGGEARPLFALPGLTRMADQKRLTIKEMR 374
Query: 341 KIGPDIRILA 350
+G D I+A
Sbjct: 375 AVGRDWHIIA 384
>gi|89097868|ref|ZP_01170755.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911]
gi|89087370|gb|EAR66484.1| riboflavin specific deaminase [Bacillus sp. NRRL B-14911]
Length = 371
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 142/358 (39%), Positives = 214/358 (59%), Gaps = 15/358 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDA--LLNAAAQGY 57
M LAL A+ +I +SPNP VG V+VK+ +I G G HAE+ A + + A+G
Sbjct: 7 MDLALSLARKTIGQTSPNPCVGAVVVKDGQIAGMGAHLKAGTQHAEVHAIRMADGLARGA 66
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
++Y +TLEPCS+ G TPPC + +I+SGIK+V+IA DPNP+V+G+G+A+L +AGI
Sbjct: 67 EIY-----VTLEPCSHHGKTPPCADLIIESGIKRVVIASIDPNPIVAGRGIAKLEAAGIE 121
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V+ G+ ++EA EIN FF M+ P+V +K A+S D KT+ SQWITS ESR D H
Sbjct: 122 VEVGIRREEAEEINSAFFHFMRTSRPYVTIKAAASFDGKTAANTGDSQWITSPESREDVH 181
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS--C 235
R AILTG+ TV+ DNP+L R + P R+++DS LRI +L +
Sbjct: 182 RLRHEHDAILTGVNTVIHDNPQLTARLPRGGKNPIRVILDSTLRIPGDAAILHDQKAPVI 241
Query: 236 IFTATDLP-MKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
IFT ++ K + ++ LG E++ P +V V+ ELG R+I + +E G +++ +
Sbjct: 242 IFTGSNYDNSKAEQIKALGTELVHFPEE--EVPAGKVLEELGTRQILSVFVEGGSEIHAS 299
Query: 295 LILEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
I EG +++LY +P +IG +A S+D+ L F ++IGPD++I+A
Sbjct: 300 FIKEGLFQQIILYAAPKIIGGRKAVPFIGGEGISSMDQSTPLAFKSAERIGPDLKIIA 357
>gi|408479233|ref|ZP_11185452.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. R81]
Length = 378
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 139/369 (37%), Positives = 210/369 (56%), Gaps = 33/369 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ +I+ G+ + G HAE +AL A A+
Sbjct: 16 MARALELARKGLYTTHPNPRVGCVIVRDGQIVGEGWHERTGEPHAEPNALRAAGAR---A 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G+TPPC +AL+ +G+ +V+ + DPNP V+G+G+ +L AGI V+
Sbjct: 73 RGATVYVTLEPCSHHGHTPPCADALVTAGVARVVAGMQDPNPEVAGRGMQRLAQAGIEVR 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ N SQWIT +R
Sbjct: 133 SGVLEAEARALNPGFLKRMEHGLPFVRVKLAMSLDGRTAMANGESQWITGPAARAAVQRL 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA + +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 193 RAEASVVLTGADTVLADGARLTVRAAELGLDEATTALAMSRPPLRVLIDGRLRVPLNAPF 252
Query: 226 FRVLKGGG----SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
F K G +C+ P G E +V+P G+VDL++ ++ L R +N
Sbjct: 253 F---KAGPALVITCVTPENQFPR--------GPECLVVPGVDGQVDLRSALVALAARGVN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQK 341
E+ +EAG L A +G VDE +++I+ +G A P L +LK E++
Sbjct: 302 EVLVEAGPSLAGAFAQQGLVDEYVIFIAGKFLGSAARPLLDWPLEKLANAPQLKITEMRA 361
Query: 342 IGPDIRILA 350
+G D R+ A
Sbjct: 362 VGDDWRVTA 370
>gi|312880086|ref|ZP_07739886.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Aminomonas paucivorans DSM 12260]
gi|310783377|gb|EFQ23775.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase
;5-amino-6-(5-phosphoribosylamino)uracil reductase
[Aminomonas paucivorans DSM 12260]
Length = 378
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/334 (39%), Positives = 194/334 (58%), Gaps = 6/334 (1%)
Query: 15 SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYF 74
SPNPRVGCV+V+E +++ GY + GG HAE++AL A G STVY+ LEPCS+
Sbjct: 37 SPNPRVGCVVVREGKVVGWGYHRRYGGPHAEVEALRRA---GTLAEGSTVYVNLEPCSHQ 93
Query: 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGF 134
G TPPC L+++ + + ++ + DPNP V G+G+ L AGI V + ++ +EA IN GF
Sbjct: 94 GKTPPCAPQLVEARVARAVVGMRDPNPRVDGRGIDLLRDAGIEVLESVLPEEARWINRGF 153
Query: 135 FSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVL 194
RM RG PWV +K A SLD T+L + S+WIT +R+ +H+ R AIL G+GTVL
Sbjct: 154 IRRMTRGRPWVTLKGALSLDGTTALESGESRWITGPLARDKAHLLRGEHDAILVGVGTVL 213
Query: 195 KDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKR-KILEDLG 253
D+P L VRS++ P R+V+D LR +VL GG FT D+P + LE+ G
Sbjct: 214 LDDPELTVRSVEGVC-PRRVVLDGALRTPQTAKVLASGGCTFFTEQDMPQGAGQRLEERG 272
Query: 254 HEVIVLPNN-LGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPIL 312
E+ +P G + L V+ L IN L +E G ++ + + E VDE+ L+++P L
Sbjct: 273 AEICRVPRGPEGGLSLVPVLEHLASAGINTLLVEGGARVAGSFLREKLVDEVSLFLAPKL 332
Query: 313 IGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+G + LD+ L+ I++ G D+
Sbjct: 333 LGRGLQLGESWGLEHLDQGFDLRSCRIRQAGEDL 366
>gi|392541629|ref|ZP_10288766.1| riboflavin biosynthesis protein [Pseudoalteromonas piscicida JCM
20779]
Length = 370
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 135/352 (38%), Positives = 214/352 (60%), Gaps = 24/352 (6%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNP VGCVIVK+ I+ G G HAE+ AL A A+ ++T Y+TLEPCS
Sbjct: 25 TTTPNPNVGCVIVKDGEIVGEGAHLKAGEGHAEVHALKQAGAK---AADATAYVTLEPCS 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC + LI +G+ +V+ A+ DPNP V+G+G+A L +AGI GL++ +A +N
Sbjct: 82 HYGRTPPCAKGLIDAGVSRVVAAMVDPNPQVAGRGLAMLEAAGIETAFGLLEPQARALNT 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF RM+ G+P+V K+A+SLD KT+L N S+WITS +R D RA+SC +LTG T
Sbjct: 142 GFLKRMEYGLPFVTCKLAASLDGKTTLTNGQSKWITSAAARLDVQRHRAQSCVVLTGADT 201
Query: 193 VLKDNPRLNVRS--IKTS-------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLP 243
V+ DN RLNVR ++ + QP R +IDS R+ P + K A+ +
Sbjct: 202 VMVDNARLNVREEFLQDTDYPQPELRQPIRAIIDSQNRLTPDLALFK-------IASPVI 254
Query: 244 MKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
+ R+ +++ E IV+P GK+DL+AV+ +L ++ N + +EAG L + +
Sbjct: 255 IFRRTIDNSAQWPHFVEQIVVPEINGKLDLKAVLNKLAEKHCNYVWLEAGATLAGVMHEQ 314
Query: 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
G +DE ++Y++P +IG +F P ++ + +L F ++ ++GPD++++A
Sbjct: 315 GLIDEYIIYLAPKIIGAGKGLFNTTPLSAMSQIPELVFGDVCQVGPDLKLIA 366
>gi|422911108|ref|ZP_16945736.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HE-09]
gi|341632480|gb|EGS57346.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HE-09]
Length = 367
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 137/353 (38%), Positives = 213/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ AA +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQAAEL---TRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ E+ + N GK+DL+ ++ +L ++ +N+L +EAG QL +LI +
Sbjct: 252 TPSPVLRVASENA--ELCISAKN-GKLDLRELLAQLAQQHNVNQLWVEAGSQLAQSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|397696264|ref|YP_006534147.1| riboflavin biosynthesis protein RibD [Pseudomonas putida DOT-T1E]
gi|397332994|gb|AFO49353.1| riboflavin biosynthesis protein RibD [Pseudomonas putida DOT-T1E]
Length = 376
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 208/366 (56%), Gaps = 26/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 70 RGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 130 SGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LT +VL DN R+ VR ++ S P R+++D LR+ PF
Sbjct: 190 RARSSVVLTSAASVLTDNARMTVRGAELGLDAETTALALSRTPLRVLVDGRLRLPLAAPF 249
Query: 226 FRVLKGGGSCIFTA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
F + G + + TA D P GHE++ LP + G+VDL A++ L R +NE+
Sbjct: 250 F---QAGPALVVTAVADDPRYAAA----GHELLSLPGDNGQVDLAALLRALAARGVNEIL 302
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
+EAG L A +G VDE L+++ +G P + + +LK E++ +G
Sbjct: 303 LEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEMRAVGD 362
Query: 345 DIRILA 350
D R+ A
Sbjct: 363 DWRVTA 368
>gi|424660773|ref|ZP_18098020.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HE-16]
gi|408050146|gb|EKG85319.1| riboflavin biosynthesis protein RibD [Vibrio cholerae HE-16]
Length = 367
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 213/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLGVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ E+ + N GK+DL+ ++ +L ++ +N++ +EAG QL +LI +
Sbjct: 252 TPSPVLRVASENA--ELCISAKN-GKLDLRELLAQLAQQHNVNQVWVEAGSQLAQSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIMLYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|260914242|ref|ZP_05920715.1| riboflavin biosynthesis protein RibD [Pasteurella dagmatis ATCC
43325]
gi|260631875|gb|EEX50053.1| riboflavin biosynthesis protein RibD [Pasteurella dagmatis ATCC
43325]
Length = 377
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/366 (39%), Positives = 210/366 (57%), Gaps = 31/366 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL A+ ++PNP VGCV+VK+ I+ G+ G HAE+ AL +A G
Sbjct: 12 MQMALDLAQQGQFTTTPNPSVGCVLVKDGSIVGKGFHFKAGEPHAEVMALRDA---GEQA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + LI++G+ +V+ A+ DPNP V+GKG+ L GI
Sbjct: 69 KGATAYVTLEPCSHFGRTPPCAKGLIEAGVARVVSAMRDPNPQVAGKGLQMLAEQGIESA 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A +N GF RM+ G P+V++K+A SLD +T+L N S+WITS+ SR D +
Sbjct: 129 VGLLEEKAEWLNRGFLKRMRTGKPFVQLKMAMSLDGRTALANGESKWITSELSRQDVQVE 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TV+ D+P LNVR + QP R+++DS ++ P R
Sbjct: 189 RAKASAILSASSTVIADDPLLNVRWEQLPKQVQQQYKHENLRQPIRVILDSQNQVQPTQR 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-----EVIVLPNNLGKVDLQAVIIELGKRKINE 282
+ + F + K DL E I+L + L +++ELGKR+IN
Sbjct: 249 LFQVDSPVWFVS-------KSERDLSGYPQSCEQIILEDKAEY--LHNLMLELGKRQINT 299
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
L IEAG L ALI VDEL++Y +P L+G EA + LP L + K H I++
Sbjct: 300 LWIEAGATLAGALIEANLVDELIIYTAPKLLGDEARGLCKLPHLNKLADASQWKLHSIER 359
Query: 342 IGPDIR 347
IG D++
Sbjct: 360 IGDDVK 365
>gi|386834105|ref|YP_006239420.1| riboflavin biosynthesis protein RibD [Pasteurella multocida subsp.
multocida str. 3480]
gi|385200806|gb|AFI45661.1| riboflavin biosynthesis protein RibD [Pasteurella multocida subsp.
multocida str. 3480]
Length = 375
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 210/364 (57%), Gaps = 23/364 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ A K ++PNP VGCV+VK+ I+ G+ G HAE+ AL A G +
Sbjct: 11 MQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMALREA---GENA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + LI +G+ KV+ A+ DPNP V+G+G+ L AGI
Sbjct: 68 RGATAYVTLEPCSHFGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLRMLSDAGIESA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ ++A +N GF RM+ G P+V++K+A SLD +T++ N S+WIT + +R D
Sbjct: 128 VGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELARADVQAE 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR +K + QP R+++DS R+ P R
Sbjct: 188 RAKASAILSTSATVLADDPLLNVRWQQLPDKVKADYTQAQLRQPVRVILDSQHRVQPSHR 247
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
+ + R +LE H E I L + L ++ ELG+R+IN L IE
Sbjct: 248 LFSLSSPVWLVSQ---TARSLLEFPAHCEQIQLSASANA--LADLMAELGQRQINTLWIE 302
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKL-KFHEIQKIGPD 345
AG L ALI VDEL++YI+P L+G+A PH S + L + H I+K+G D
Sbjct: 303 AGATLAGALIEAKLVDELIIYIAPKLLGDAARGLCKLPHLSTLAEASLWQLHSIEKLGDD 362
Query: 346 IRIL 349
++ +
Sbjct: 363 LKTI 366
>gi|421524832|ref|ZP_15971453.1| riboflavin biosynthesis protein RibD [Pseudomonas putida LS46]
gi|402751295|gb|EJX11808.1| riboflavin biosynthesis protein RibD [Pseudomonas putida LS46]
Length = 376
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 208/366 (56%), Gaps = 26/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GELA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 70 RGACAYVTLEPCSHHGRTPPCAEALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 130 SGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LT +VL DN R+ VR ++ S P R+++D LR+ PF
Sbjct: 190 RARSSVVLTSAASVLTDNARMTVRGAELGLDAETTALALSRTPLRVLVDGRLRLPLAAPF 249
Query: 226 FRVLKGGGSCIFTA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
F + G + + TA D P GHE++ LP + G+VDL A++ L R +NE+
Sbjct: 250 F---QAGPALVVTAVADDPRYAAA----GHELLSLPGDNGQVDLAALLRALAARGVNEIL 302
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
+EAG L A +G VDE L+++ +G P + + +LK E++ +G
Sbjct: 303 LEAGAGLIGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEMRAVGD 362
Query: 345 DIRILA 350
D R+ A
Sbjct: 363 DWRVTA 368
>gi|398792083|ref|ZP_10552781.1| riboflavin biosynthesis protein RibD [Pantoea sp. YR343]
gi|398214215|gb|EJN00798.1| riboflavin biosynthesis protein RibD [Pantoea sp. YR343]
Length = 367
Score = 246 bits (628), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 210/362 (58%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV+E I+ G+ + G HAE+ AL A G
Sbjct: 7 MARALELARRGRFTTTPNPNVGCVIVREGEIVGEGWHQRAGEPHAEVHALRMA---GERA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 AGATAYVTLEPCSHHGRTPPCCDALIAAGVTRVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G PW+++K+ +SLD +T++ + SQWITS +R D
Sbjct: 124 HGLMMNEAEALNRGFLKRMRTGFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL DNP L VR + + QP R+VIDS R+ P
Sbjct: 184 RAQSSAILSTSATVLADNPSLTVRWSELNEEVRAQLDESQLRQPVRVVIDSQQRVTPQHC 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G ++ ++ I +P ++DL A+++ LG+R+IN + +EA
Sbjct: 244 LIDQPGETWLMRSE---PDELTWPASVTQIAVPQRGEQLDLVAMMMLLGQRQINSVWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G A + TLP L L F +++ +G D+
Sbjct: 301 GAGLAGALLQAGLVDELIVYMAPKLLGNAARGLCTLPGLEQLADAPALNFSDVRLVGADL 360
Query: 347 RI 348
R+
Sbjct: 361 RL 362
>gi|395446901|ref|YP_006387154.1| riboflavin biosynthesis protein RibD [Pseudomonas putida ND6]
gi|388560898|gb|AFK70039.1| riboflavin biosynthesis protein RibD [Pseudomonas putida ND6]
Length = 378
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 208/366 (56%), Gaps = 26/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 15 MARALELARKGLYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GELA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 72 RGACAYVTLEPCSHHGRTPPCAEALVKAGVTRVVAAMQDPNPQVAGQGLRRLAEAGIEVA 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVLEAEARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RARS +LT +VL DN R+ VR ++ S P R+++D LR+ PF
Sbjct: 192 RARSSVVLTSAASVLADNARMTVRGAELGLDAETAALALSRTPLRVLVDGRLRLPLAAPF 251
Query: 226 FRVLKGGGSCIFTA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
F + G + + TA D P GHE++ LP + G+VDL A++ L R +NE+
Sbjct: 252 F---QAGPALVVTAVADDPRYAAA----GHELLSLPGDNGQVDLAALLRALAARGVNEVL 304
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
+EAG L A +G VDE L+++ +G P + + +LK E++ +G
Sbjct: 305 LEAGAGLVGAFARQGLVDEYQLFVAGTFLGSQARPLLDWPMDKMSEAPRLKITEMRAVGD 364
Query: 345 DIRILA 350
D R+ A
Sbjct: 365 DWRVTA 370
>gi|269792620|ref|YP_003317524.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio
acidaminovorans DSM 6589]
gi|269100255|gb|ACZ19242.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio
acidaminovorans DSM 6589]
Length = 377
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 134/348 (38%), Positives = 202/348 (58%), Gaps = 6/348 (1%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL A + SPNP+VGCVIVK+ +++ GY K GG HAE++AL A G
Sbjct: 22 MRMALSLAIRGGTAVSPNPKVGCVIVKDGQVVGWGYHKRYGGPHAEVEALTMA---GDRA 78
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC L+++GI++V+ + DPNP V+G+G+ L S G+ V
Sbjct: 79 QGATAYVTLEPCSHHGKTPPCAPRLVEAGIRRVVYGMMDPNPKVNGRGLEILASGGVEVV 138
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+M+ N GF RM G PWV +K A S+D T L N S+WIT +R +H+
Sbjct: 139 GPVMEDRCRWENRGFIRRMTLGRPWVTLKGALSVDGTTCLENGKSKWITGPLARQKAHLL 198
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA AIL GI TV+ D+P LNVRS+ P ++++D LR+ + LK G +FT+
Sbjct: 199 RAEHDAILVGINTVINDDPALNVRSVD-GDSPKKVILDGGLRVPLDAKALKDGERIVFTS 257
Query: 240 TDLPMKR-KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
TD P R + L D+G +V +P+ G +DL +V+ LG +N L +E G ++ A +
Sbjct: 258 TDAPKDRVEALRDMGVQVCPVPSQGGLLDLASVLSALGGMGVNSLLVEGGPRVLGAFVDR 317
Query: 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
D + L+ISP ++G + ++ ++ ++ H I++ G DI
Sbjct: 318 CLGDMVSLFISPSILGRGLQLCESFEIEGMENRVHIRDHSIRRAGNDI 365
>gi|161869403|ref|YP_001598570.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylamino)uracil reductase
[Neisseria meningitidis 053442]
gi|161594956|gb|ABX72616.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/phosphoribosylamino)uracil reductase
[Neisseria meningitidis 053442]
Length = 305
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 123/267 (46%), Positives = 177/267 (66%), Gaps = 4/267 (1%)
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120
+T ++TLEPCS++G TPPC EAL++SG+ +V+ A+ DPNPLV+GKG+A L +AGI +
Sbjct: 4 GATAFVTLEPCSHYGRTPPCAEALLRSGVTRVVAAMRDPNPLVAGKGLAMLEAAGIKTEC 63
Query: 121 GLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR 180
GL++ +A E+N GF SR++R P+VR+K A SLD KT+L + SS WIT +++R D + R
Sbjct: 64 GLLEHQARELNRGFLSRIERRRPFVRLKCAVSLDGKTALSDGSSFWITGEDARADVQVLR 123
Query: 181 ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT 240
A SCA+LTGIGTVL DNPRLNVR+ T QP RIV+DS LR+ +L G S + AT
Sbjct: 124 AESCAVLTGIGTVLADNPRLNVRAFPTLRQPARIVLDSRLRLPLDSHLLTDGQSPTYIAT 183
Query: 241 DLPMKRKI--LEDLGHEVIVLPNNL--GKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
+ K+ + H I++P+ GK+DL ++ L E+ +EAG +L +A +
Sbjct: 184 LERDEDKLRPYREHAHIRILMPSETADGKIDLHHLMRLLADEGFGEIMVEAGSELTSAFL 243
Query: 297 LEGCVDELLLYISPILIGEAYNMFTLP 323
E DE++LY SP ++G +F LP
Sbjct: 244 AEDLADEIVLYRSPKILGGGSGLFCLP 270
>gi|417841484|ref|ZP_12487588.1| Riboflavin biosynthesis protein RibD [Haemophilus haemolyticus
M19501]
gi|341949522|gb|EGT76126.1| Riboflavin biosynthesis protein RibD [Haemophilus haemolyticus
M19501]
Length = 372
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 143/362 (39%), Positives = 215/362 (59%), Gaps = 22/362 (6%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK I+ G+ G HAE AL A G +
Sbjct: 12 MQLALDLAAKGQYTTTPNPSVGCVLVKHGEIVGEGFHFKAGQPHAERVALAQA---GENA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC LI++GI KVI A+ DPNP V+GKG+ L AGI
Sbjct: 69 KGATAYVTLEPCSHYGRTPPCALGLIEAGIVKVIAAMQDPNPQVAGKGLKMLSDAGIESA 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
L+ +A +IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D
Sbjct: 129 VNLLNDQAEKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSDVQKM 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S A+L+ TVL D+P LNVR ++KT + QP R+++DS RI P +
Sbjct: 189 RAKSSALLSTSATVLADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQPTHK 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+ S ++ ++ P D ++I+ NL L+ ++ ELGKR+IN L +EA
Sbjct: 249 LFL-THSPVWLVSNEPRDLTGFPDFCEQIILPKENL----LKELMRELGKRQINMLWVEA 303
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L +LI VDEL++Y++P L+G+ A + LP L + +E+++IG DI
Sbjct: 304 GANLAGSLIDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGNDI 363
Query: 347 RI 348
++
Sbjct: 364 KL 365
>gi|71282342|ref|YP_267480.1| riboflavin biosynthesis protein RibD [Colwellia psychrerythraea
34H]
gi|71148082|gb|AAZ28555.1| riboflavin biosynthesis protein RibD [Colwellia psychrerythraea
34H]
Length = 389
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/385 (38%), Positives = 231/385 (60%), Gaps = 33/385 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEK----RIISCGYTKSPGGNHAEIDALLNAAAQ 55
M+ A+ AK +SPNPRVGCV+V K ++I GY + G HAE++AL A
Sbjct: 1 MSRAIDLAKKGHFTTSPNPRVGCVLVSYKEGVGKVIGEGYHQKAGQGHAEVNALAEAKVN 60
Query: 56 GYD-VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
+ +T Y+TLEPCS+FG TPPC +AL+ +G+ VI A+ DPNP VSG G++ L A
Sbjct: 61 NPALIKGATAYVTLEPCSHFGRTPPCAKALVDAGVSHVIAAMVDPNPQVSGNGLSLLEKA 120
Query: 115 GISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRN 174
GI+V+ GL+++ A +N+GF +M +P+VR K+A+SLD KT++ + S+WITS ++R
Sbjct: 121 GITVQSGLLEQSARLLNVGFIHKMVNNLPYVRCKLAASLDGKTAMASGESKWITSADARQ 180
Query: 175 DSHIWRARSCAILTGIGTVLKDNPRLNVR-----SIKTSH------QPYRIVIDSYLRID 223
D RA+SCAI+TG +VL DN ++ VR +K+++ QP RIVIDS R+
Sbjct: 181 DVQRLRAQSCAIITGADSVLFDNAKMTVRWSELGELKSNYPKEALRQPLRIVIDSQNRLT 240
Query: 224 PFFRVLKGGGSCIFTATDLP--MKRKI---LEDLGH-----EVIVLP---NNLG--KVDL 268
P + + + P ++ KI LE+L E + LP N+ G K++L
Sbjct: 241 PNLALFEHQSPILIINGIDPDYVENKIESHLENLPKWPHFVEQVQLPVTENSQGKLKINL 300
Query: 269 QAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILI-GEAYNMFTLPPHYS 327
+A++ L KR +N++ IE+G +L+ A I + V+EL+LY +P L+ G+ N+ +P
Sbjct: 301 KALLEYLAKRGLNDILIESGARLSGAFIEQNLVNELILYQAPKLMGGDGKNLMEMPSVSK 360
Query: 328 LDKKIKLKFHEIQKIGPDIRILARF 352
L++ L +I+ +G DIRI ++
Sbjct: 361 LNQAKALTISDIRMVGVDIRITSQL 385
>gi|157374412|ref|YP_001473012.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
sediminis HAW-EB3]
gi|157316786|gb|ABV35884.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Shewanella
sediminis HAW-EB3]
Length = 374
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 144/365 (39%), Positives = 217/365 (59%), Gaps = 23/365 (6%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A++ A+ + + PNP VG V+ K ++I G+ GG HAE+ AL A+ +
Sbjct: 10 MSRAIKLARKGLYTTRPNPCVGSVVTKAGQVIGEGFHIRAGGPHAEVYALAMASD---NA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALIK+G+ +V++AI DPNP VSG+G+ L AGI V
Sbjct: 67 KGATAYVTLEPCSHHGRTPPCAEALIKAGVARVVVAIEDPNPQVSGRGIKMLTDAGIQVD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA +IN GF RMQ G+P + +K+ASSLD KT+L N S+WIT E+R D
Sbjct: 127 VGLLNVEAGDINPGFMKRMQSGLPKITVKLASSLDGKTALNNGVSKWITGSEARRDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS-----------HQPYRIVIDSYLRIDPFFRV 228
RAR CA++TGI TVL D+P LNVR + HQP R+++DS R+ F++
Sbjct: 187 RARHCALVTGIETVLIDDPSLNVRHSELGVLANELAPSEIHQPLRVILDSRARLTKGFKL 246
Query: 229 LKGGGSCIF-TATDLPMKRKIL--EDLGHEVIVLP-NNLGKVDLQAVIIELGKRKINELH 284
+ + TD P++ + E + H + LP ++ G+V L + LG+ N +
Sbjct: 247 FSVNSPILLVSCTDYPLEEQTAWPEHVSH--LKLPADDCGRVVLSLLFKHLGQ-SCNSVL 303
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIG 343
IEAG L ++I +G DEL+LY + ++G A N+ +LP + ++ ++ + +K+G
Sbjct: 304 IEAGATLAGSVIEQGHGDELVLYQAMKILGSAGRNLISLPGYEAMADIPAVELIDERKLG 363
Query: 344 PDIRI 348
D R+
Sbjct: 364 KDTRL 368
>gi|415885142|ref|ZP_11547070.1| riboflavin biosynthesis protein RibD [Bacillus methanolicus MGA3]
gi|387590811|gb|EIJ83130.1| riboflavin biosynthesis protein RibD [Bacillus methanolicus MGA3]
Length = 371
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/360 (39%), Positives = 211/360 (58%), Gaps = 17/360 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL A+ ++ +SPNP VG V+VK I+ G G HAE+ A+ A G
Sbjct: 7 MKLALSMARAAVGQTSPNPSVGAVVVKNGEILGMGAHLKAGTPHAEVHAIRTA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +Y+TLEPCS++G TPPCTE +I SGIK+V++A DPNPLV+G GV QL AGI V+
Sbjct: 64 RGADLYVTLEPCSHYGKTPPCTELIISSGIKRVVVATLDPNPLVAGTGVKQLRQAGIEVE 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ + EA +IN FF +Q G P+V +K A +LD KT+ S+WITS ++R+D H
Sbjct: 124 VGVGKNEADQINEPFFHYIQTGKPYVTLKAAVTLDGKTATKTGDSKWITSAQARSDVHQL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
R AIL GI TVL DNP L R + P RI++D++LRI V+K +
Sbjct: 184 RHEHDAILVGIQTVLNDNPLLTTRLPRGGKNPIRIILDTHLRIPLDANVIKDKTAKTIVI 243
Query: 240 TDLPMKRKILEDLGHE--VIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
T R+ ++L HE V V+P + ++D+ ++ LGKR+I + +E G +++ + I
Sbjct: 244 TGNEFDRQKADNL-HELGVEVVPLSTAQIDINELLTVLGKRQIMSVLVEGGSKVHASFIK 302
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPP------HYSLDKKIKLKFHEIQKIGPDIRILAR 351
+L+ Y++P +IG + +P + D + KL+F I++IGPDI+I A+
Sbjct: 303 ARAFQQLIFYVAPKVIG---GIDAIPAIGGEGLDFVRDAE-KLEFTSIERIGPDIKITAK 358
>gi|251792829|ref|YP_003007555.1| riboflavin biosynthesis protein RibD [Aggregatibacter aphrophilus
NJ8700]
gi|247534222|gb|ACS97468.1| riboflavin biosynthesis protein RibD [Aggregatibacter aphrophilus
NJ8700]
Length = 374
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 211/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK +II G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTATPNPAVGCVLVKNGQIIGKGFHAKAGEPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC + L+ +G++ VI A+ DPNPLV+GKG+ L AGI
Sbjct: 70 RGATAYVTLEPCAHYGRTPPCAKGLVDAGVRIVIAAMCDPNPLVAGKGLGILADAGIESA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++ A E+N GF RM+ G P+V++K+A S+D KT++ N S+WIT ++R D +
Sbjct: 130 VGLLKENAEELNKGFLKRMRTGRPFVQLKLAMSIDGKTAMANGESKWITGAQARADVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL DNP LNVR + QP R+++DS ++ F
Sbjct: 190 RAKASAILSTSQTVLADNPSLNVRWAELPQEVQSRYAEQHLRQPVRVILDSAHKVRSDFN 249
Query: 228 VLKG------GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
+ G F P + L+ ++PN G+ LQ ++ ELG+R+IN
Sbjct: 250 LFLTDSPVWLAGKDKFQLNGFPASTEYLQ-------LIPNQ-GESHLQTLMTELGRRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQ 340
L +EAG L ALI E VDEL++Y++P L+G +A ++ LP L + +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDQARDLCHLPNLTKLADAPLWELQLCE 361
Query: 341 KIGPDIRIL 349
+G D++++
Sbjct: 362 PVGNDLKLI 370
>gi|329298304|ref|ZP_08255640.1| riboflavin biosynthesis protein RibD [Plautia stali symbiont]
Length = 367
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 143/363 (39%), Positives = 210/363 (57%), Gaps = 20/363 (5%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ I+ G+ + G HAE+ AL A G
Sbjct: 7 MARALELARRGQYTTTPNPNVGCVIVRDGEIVGEGWHQRAGEPHAEVHALRMA---GDHA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 CGATAYVTLEPCSHHGRTPPCCDALIAAGVSRVVAAMQDPNPQVAGRGLYRLQQAGIEVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ PW+++K+ +SLD +T++ + SQWITS +R D
Sbjct: 124 HGLMMNEAEALNRGFLKRMRTSFPWIQLKLGASLDGRTAMASGESQWITSAAARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RARS AILT TVL DNP L VR + S QP R+VIDS R+ P R
Sbjct: 184 RARSSAILTTSATVLADNPSLTVRWNELSETVRQQLDESQLRQPVRVVIDSQQRVTPQHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ G T+ + G I +P ++DL A+++ L +R+IN + +EA
Sbjct: 244 LIAQPGETWLMRTEADAQSW---PSGVSQIEVPPRGEQLDLVAMMMLLCQRQINSVWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y+ P L+G A + LP +L L F +++++G D+
Sbjct: 301 GAGLAGALLQAGLVDELIVYLVPKLLGNAARGLCALPGLETLADAPALNFSDVRQVGDDL 360
Query: 347 RIL 349
R++
Sbjct: 361 RLI 363
>gi|425901826|ref|ZP_18878417.1| riboflavin biosynthesis protein RibD [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397892858|gb|EJL09334.1| riboflavin biosynthesis protein RibD [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 377
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 213/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AK ++ PNPRVGCVIV++ +++ G+ G HAE+ AL A A
Sbjct: 15 MARALELAAKGRFSTHPNPRVGCVIVRDGQVVGEGWHVRAGEPHAEVHALRAAGAN---A 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVDAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATH 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M+++A +N GF RM++G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVMEQQARALNQGFLKRMEQGLPFVRVKLAMSLDGRTAMASGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL DN RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRAEELGLDAEQTALAMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + T + + G E +++P G+VDL+ ++ EL R +NE+ +
Sbjct: 252 F---KAGPALVATCAAVEEQYAN----GPECLIVPGADGQVDLRRLLGELAARGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A +G VDE ++++ +G P + + +LK E++ +G D
Sbjct: 305 EAGPRLAGAFAQQGLVDEYQIFVAGKFLGSTARPLLDWPLAQMSEAPQLKIIEMRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|365969236|ref|YP_004950797.1| riboflavin biosynthesis protein RibD [Enterobacter cloacae EcWSU1]
gi|365748149|gb|AEW72376.1| Riboflavin biosynthesis protein RibD [Enterobacter cloacae EcWSU1]
Length = 379
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 19/348 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIV + I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 31 FTTHPNPNVGCVIVNDGEIVGEGFHYRAGEPHAEVHALRMA---GEKARGATAYVTLEPC 87
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC EALI +G+ +V+ A+ DPNP V+G+G+ +L G+ V GLM ++A IN
Sbjct: 88 SHHGRTPPCCEALIAAGVARVVAAMQDPNPQVAGRGLYRLQQEGVDVSHGLMMQDAEAIN 147
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P++++K+ +SLD +T++ N SQWITS ++R D RA+S AILT
Sbjct: 148 KGFLKRMRTGFPYIQLKLGASLDGRTAMANGESQWITSAQARRDVQRLRAQSHAILTSSE 207
Query: 192 TVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DNP + VR + + QP RIVIDS RI P R+++ G
Sbjct: 208 TVLADNPAMTVRWDELNADTQACYPQENLRQPLRIVIDSQNRITPAHRIVQQPGETWIAR 267
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
T + G I++P + G +DL +++ LGK+++N + +EAG L AL+ G
Sbjct: 268 TQDDAREW---PQGVRSIMVPEHNGHLDLVVLMMLLGKQQVNSIWVEAGPTLAGALLQAG 324
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
VDEL++Y++P L+G +A +F LP L +LKF EI+ +GPD+
Sbjct: 325 LVDELIVYVAPKLLGNDARGLFVLPGLEKLGDAPQLKFSEIRPVGPDV 372
>gi|153803015|ref|ZP_01957601.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-3]
gi|124121458|gb|EAY40201.1| riboflavin biosynthesis protein RibD [Vibrio cholerae MZO-3]
Length = 367
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 213/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPFVQLKMAASLDGQTALANGQSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLAVRWHDLPLSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ E+ + N GK+DL+ ++ +L ++ +N++ +EAG QL +LI +
Sbjct: 252 TPSPVLRVASENA--ELCISAKN-GKLDLRELLAQLAQQHNVNQVWVEAGSQLAQSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|343513787|ref|ZP_08750882.1| riboflavin-specific deaminase [Vibrio sp. N418]
gi|342801406|gb|EGU36872.1| riboflavin-specific deaminase [Vibrio sp. N418]
Length = 368
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 218/366 (59%), Gaps = 30/366 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A++ A+ I ++PNP VGCVI ++ +I+ G+ G HAE+ AL A G
Sbjct: 12 MSRAIKLAQGGIYTTAPNPNVGCVITRDDQIVGEGFHYRAGEPHAEVHALRMA---GKLA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+ + KVI A+ DPNP VSG+G+ L AGI V+
Sbjct: 69 EGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVSGRGINMLREAGIEVQ 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N F RMQ G+P+V++K+A+SLD +T+L N SQWITS ++R D +
Sbjct: 129 VGLLEADAQALNPTFIKRMQTGMPFVQLKMAASLDGQTALANGQSQWITSAQARQDVQAF 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TV++DN LNVR SI+ + QP R+++D ++ +
Sbjct: 189 RAQSGAILSTSQTVIEDNASLNVRWDDLPLSIQAHYPAEELRQPVRVILDRQNQLSADLK 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIE 286
+ + G + A G ++ L N+ ++DL+A L K+ IN + +E
Sbjct: 249 LFQTAGDRLIVAP------------GGDMECLLNDDQQIDLRATFEMLAKQHNINHIWVE 296
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L +L+ + VDE++LY++P L+G + +F + + I+L E++++G D
Sbjct: 297 AGATLARSLMQQQLVDEVVLYLAPKLMGSDGRGLFGALGLQDMSQVIELDISELKQVGRD 356
Query: 346 IRILAR 351
IRILA+
Sbjct: 357 IRILAK 362
>gi|254286058|ref|ZP_04961019.1| riboflavin biosynthesis protein RibD [Vibrio cholerae AM-19226]
gi|150423968|gb|EDN15908.1| riboflavin biosynthesis protein RibD [Vibrio cholerae AM-19226]
Length = 367
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 135/353 (38%), Positives = 214/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G + +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTHGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+G+GV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQMLRDAGIEVEVGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLAVRWYDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ E+ + N GK+DL+ ++ +L ++ +++L +EAG QL +LI +
Sbjct: 252 TPSPVLRVASENA--ELCISAEN-GKLDLRELLAQLAQQHNVHQLWVEAGSQLAKSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|418019213|ref|ZP_12658733.1| riboflavin biosynthesis protein [Candidatus Regiella insecticola
R5.15]
gi|347605423|gb|EGY29869.1| riboflavin biosynthesis protein [Candidatus Regiella insecticola
R5.15]
Length = 379
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 148/366 (40%), Positives = 223/366 (60%), Gaps = 23/366 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A L ++PNP VGCVIV+E +I+ GY G HAEI+AL A G +
Sbjct: 13 MERALELALLGRFTTAPNPNVGCVIVREGKIVGEGYHVRAGEAHAEINALNQA---GNEA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
N+TVY+TLEPC + G TPPCT+ALI + +K+V++A+ DPNP V G+G+ QL AGI V
Sbjct: 70 RNATVYVTLEPCCHTGRTPPCTDALIAAAVKRVVVAMPDPNPQVCGRGIYQLRQAGIVVD 129
Query: 120 ---QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDS 176
++ +A +IN GF RM+ P++++K+A+SLD +T++ + SQWITSKE+R D
Sbjct: 130 YIGSTTIKAKAEDINRGFLKRMRTNFPYLQLKMAASLDGRTAMASGESQWITSKEARQDV 189
Query: 177 HIWRARSCAILTGIGTVLKDNPRLNVR--SIKTS----------HQPYRIVIDSYLRIDP 224
+RA+S AIL+ T+L DNP L VR ++ TS QP RI+IDS R+ P
Sbjct: 190 QNFRAQSDAILSTSATILADNPALTVRHETLATSVQQIYPKHCLRQPTRIIIDSCNRVMP 249
Query: 225 FFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIV-LPNNLGKVDLQAVIIELGKRKINEL 283
RV+ GSC+ + ++I D ++ + P ++DL+ +++EL + +IN +
Sbjct: 250 CHRVITEPGSCLLAR--MTADQQIWPDNVKQLFLPPPEEEKRIDLRLLMMELSRLQINSI 307
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKI 342
+EAG L AL+ G VDEL+LY++P +G+ A + LP L++ E+ +I
Sbjct: 308 WVEAGATLAGALLQIGVVDELILYLAPKFLGDNARGLCVLPGIDKLNQAHNFTLKEVCQI 367
Query: 343 GPDIRI 348
G D+R+
Sbjct: 368 GSDLRL 373
>gi|399006287|ref|ZP_10708814.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM17]
gi|398122453|gb|EJM12045.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. GM17]
Length = 377
Score = 245 bits (625), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 212/365 (58%), Gaps = 25/365 (6%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AK ++ PNPRVGCVIV++ +++ G+ G HAE+ AL A A
Sbjct: 15 MARALELAAKGRFSTHPNPRVGCVIVRDGQVVGEGWHVRAGEPHAEVHALRAAGAN---A 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVDAGVARVVAAMQDPNPEVAGRGLQRLAQAGIATH 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M+++A +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVMEQQARALNQGFLKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL DN RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAQASVVLTGADTVLADNARLTVRAEELGLDAEQTALAMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + T + + G E +++P G+VDL+ ++ EL R +NE+ +
Sbjct: 252 F---KAGPALVATCAAVEEQYAN----GPECLIVPGADGQVDLRRLLGELAARGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A +G VDE ++++ +G P + + +LK E++ +G D
Sbjct: 305 EAGPRLAGAFAQQGLVDEYQIFVAGKFLGSTARPLLDWPLAQMSEAPRLKIIEMRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|297580914|ref|ZP_06942839.1| riboflavin biosynthesis protein RibD [Vibrio cholerae RC385]
gi|297534740|gb|EFH73576.1| riboflavin biosynthesis protein RibD [Vibrio cholerae RC385]
Length = 367
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/353 (38%), Positives = 211/353 (59%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ + + GK+DL+ ++ +L ++ +N+L +EAG QL +LI +
Sbjct: 252 TPSPVLRVASEN---AELCISAEHGKLDLRELLAQLAQQHNVNQLWVEAGSQLAKSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|152998046|ref|YP_001342881.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1]
gi|150838970|gb|ABR72946.1| riboflavin biosynthesis protein RibD [Marinomonas sp. MWYL1]
Length = 384
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/363 (37%), Positives = 216/363 (59%), Gaps = 18/363 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q AK + PNPRVGCV+VK+++II G+ G HAE++AL +A +D
Sbjct: 10 MAKAIQLAKKGRYTTHPNPRVGCVLVKDQQIIGQGFHVKAGEGHAEVNALADAK---HDA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALIK+G+ +V+ + DPNP VSG G+A++ AGI +
Sbjct: 67 VGATAYVTLEPCSHQGKTPPCADALIKAGVARVVYGMQDPNPEVSGNGLAKIKKAGIEII 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+++ + +N GF RM+ G+P+VR+K+A S+D +T++ + SQWIT +R D
Sbjct: 127 GPILESDCEALNPGFIKRMREGLPYVRVKLAMSMDGRTAMESGESQWITDSAARLDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--------SIKTSHQPYRIVIDSYLRIDPFFRVL-K 230
RA+S AI+TGIG+VL DNP + VR K+ QP R+V+D+ L I P ++L
Sbjct: 187 RAQSDAIVTGIGSVLADNPSMTVRIDNDDQEADPKSVRQPIRVVMDTALSILPEAKILYP 246
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIV--LPNNL-GKVDLQAVIIELGKRKINELHIEA 287
+ +F+ + + V V P G++DL + +L INE+ +EA
Sbjct: 247 ANQAWVFSVEEEVEAEHLELLTKKGVTVRFAPRGEDGRLDLLDAMEQLADAGINEVLLEA 306
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G +L + G +DE+++Y++P L+G A +F LP +D+ + L ++++G D+
Sbjct: 307 GAELAGGFLEAGLIDEIIVYMAPKLLGSSARPLFKLPLDV-MDEAVDLTLKSVRQVGQDV 365
Query: 347 RIL 349
R++
Sbjct: 366 RLV 368
>gi|421263491|ref|ZP_15714535.1| hypothetical protein KCU_03994 [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|425065610|ref|ZP_18468730.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pasteurella
multocida subsp. gallicida P1059]
gi|401689521|gb|EJS84943.1| hypothetical protein KCU_03994 [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|404383986|gb|EJZ80431.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Pasteurella
multocida subsp. gallicida P1059]
Length = 375
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 144/364 (39%), Positives = 210/364 (57%), Gaps = 23/364 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ A K ++PNP VGCV+VK+ I+ G+ G HAE+ AL A G +
Sbjct: 11 MQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMALREA---GENA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + LI +G+ KV+ A+ DPNP V+G+G+ L AGI
Sbjct: 68 RGATAYVTLEPCSHFGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLRMLSYAGIESA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ ++A +N GF RM+ G P+V++K+A SLD +T++ N S+WIT + +R D
Sbjct: 128 VGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELARADVQAE 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR +K + QP R+++DS R+ P R
Sbjct: 188 RAKASAILSTSATVLADDPLLNVRWQQLPDKVKADYTQAQLRQPVRVILDSQHRVQPSHR 247
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
+ + R +LE H E I L + L ++ ELG+R+IN L IE
Sbjct: 248 LFSLSSPVWLVSQ---TARSLLEFPAHCEQIQLSASTNA--LADLMAELGQRQINTLWIE 302
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKL-KFHEIQKIGPD 345
AG L ALI VDEL++YI+P L+G+A PH S + L + H I+K+G D
Sbjct: 303 AGATLAGALIEAKLVDELIIYIAPKLLGDAARGLCKLPHLSTLAEASLWQLHSIEKLGDD 362
Query: 346 IRIL 349
++ +
Sbjct: 363 LKTI 366
>gi|258620986|ref|ZP_05716020.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
mimicus VM573]
gi|424807482|ref|ZP_18232890.1| riboflavin biosynthesis protein RibD [Vibrio mimicus SX-4]
gi|258586374|gb|EEW11089.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
mimicus VM573]
gi|342325424|gb|EGU21204.1| riboflavin biosynthesis protein RibD [Vibrio mimicus SX-4]
Length = 367
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 135/353 (38%), Positives = 214/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+G+GV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQMLRDAGIEVQIGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 SGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++T + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLAVRWHDLPQSVQTQYAETDLRQPLRVILDRQHQLHPELALYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ ++ + N GK+DL+ ++ +L ++ +N++ +EAG QL +LI +
Sbjct: 252 TPSPVLRVASENA--DLCISAEN-GKLDLRELLAQLAQQHNVNQVWVEAGSQLAQSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|386289015|ref|ZP_10066154.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase [gamma
proteobacterium BDW918]
gi|385278019|gb|EIF41992.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase [gamma
proteobacterium BDW918]
Length = 376
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 211/363 (58%), Gaps = 15/363 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LALQ A+ ++SPNPRVGCVI ++I+ G+ G HAE++AL AQ
Sbjct: 11 MALALQLAERGRYSTSPNPRVGCVIALHDKVIARGWHIRAGDGHAEVNAL----AQIASA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ T+Y+TLEPCS+ G TPPC + L+++ + +V++A+ DPNPLV+G+G+A+L AG+ V
Sbjct: 67 EDCTIYVTLEPCSHLGRTPPCADRLLEANVARVVVAVEDPNPLVAGQGIARLREAGVQVD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM ++A EIN GF R+ G+PW+R+K ASSLD +T++ + SQWIT +R D
Sbjct: 127 VGLMAEQAIEINKGFMRRINGGLPWLRLKSASSLDGRTAMASGESQWITGAAARQDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS--------HQPYRIVIDSYLRIDPFFRVLKG 231
RA+SC I++G+ T+L DN NVR + QP R+++DS LR ++
Sbjct: 187 RAQSCVIVSGVDTILHDNALFNVRPESFAPEQVNEFWRQPLRVIVDSTLRTPVNAKLFDE 246
Query: 232 GGSCIF-TATDLPMKRKILEDLGHEVIVLPNNL-GKVDLQAVIIELGKRKINELHIEAGY 289
GG I T P + L G ++ L ++ G+V L A++ L R NE+ +EAG
Sbjct: 247 GGEVIIATVVQDPERYAPLSAAGAIILSLDDDGNGRVSLPALMRYLADRGCNEVLLEAGP 306
Query: 290 QLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
L + + G VDE +Y++P L+G + P + + L+ +I+ +G D RI
Sbjct: 307 TLTGSALRAGLVDEWFVYMAPSLMGSSARPLVDWPMTKMAGQQALEIVDIRAVGKDWRIH 366
Query: 350 ARF 352
R
Sbjct: 367 CRL 369
>gi|138895866|ref|YP_001126319.1| riboflavin biosynthesis protein RibD [Geobacillus
thermodenitrificans NG80-2]
gi|134267379|gb|ABO67574.1| Riboflavin biosynthesis protein RibD [Geobacillus
thermodenitrificans NG80-2]
Length = 359
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 214/357 (59%), Gaps = 11/357 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK + +SPNP VG V+V + I+ G G HAE+ A+ A G
Sbjct: 1 MRLALDVAKAGVGQTSPNPAVGAVVVNDGTIVGIGAHLKAGEPHAEVHAIRMA---GEKA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS++G TPPC + LI++G+++V++A DPNPLV+GKG+ +L AGI V+
Sbjct: 58 RGATVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDVE 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++++EA E+N FF + P+V +K A SLD K + S+WITS +R D H
Sbjct: 118 VGILKEEADELNRMFFHYIATKTPFVTIKYACSLDGKIATATGESKWITSSAAREDVHRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLR--IDPFFRVLKGGGSCIF 237
RA+ AIL G+ TV+ DNP+L VR + P R+++D+ L +D V K + I
Sbjct: 178 RAQHDAILVGVNTVMADNPKLTVRIGQQRKNPLRVILDTNLHTPLDAHVVVDKEAETWII 237
Query: 238 TATDLPM-KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T + + K K+ E LG V ++P +D++ V+ LG+++I L +E G +++ + +
Sbjct: 238 TGSGVSREKAKMYERLG--VRIVPMTSAHIDVREVLRLLGEQRITSLFVEGGSRIHDSFL 295
Query: 297 LEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G V+E++ Y++P LIG EA L + ++L +I+KIGPDI+I+A+
Sbjct: 296 RSGMVNEVVAYMAPKLIGGREAPTPVGGLGFSRLAEAMELDIRQIEKIGPDIKIVAK 352
>gi|196248758|ref|ZP_03147458.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16]
gi|196211634|gb|EDY06393.1| riboflavin biosynthesis protein RibD [Geobacillus sp. G11MC16]
Length = 366
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 138/357 (38%), Positives = 214/357 (59%), Gaps = 11/357 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK + +SPNP VG V+V + I+ G G HAE+ A+ A G
Sbjct: 8 MRLALDVAKAGVGQTSPNPAVGAVVVNDGTIVGIGAHLKAGEPHAEVHAIRMA---GEKA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS++G TPPC + LI++G+++V++A DPNPLV+GKG+ +L AGI V+
Sbjct: 65 RGATVYVTLEPCSHYGKTPPCADLLIEAGVRRVVVATTDPNPLVAGKGINKLRRAGIDVE 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++++EA E+N FF + P+V +K A SLD K + S+WITS +R D H
Sbjct: 125 VGILKEEADELNRMFFHYIATKTPFVTIKYACSLDGKIATATGESKWITSSAAREDVHRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLR--IDPFFRVLKGGGSCIF 237
RA+ AIL G+ TV+ DNP+L VR + P R+++D+ L +D V K + I
Sbjct: 185 RAQHDAILVGVNTVMADNPKLTVRIGQQRKNPLRVILDTNLHTPLDAHVVVDKEAETWII 244
Query: 238 TATDLPM-KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T + + K K+ E LG V ++P +D++ V+ LG+++I L +E G +++ + +
Sbjct: 245 TGSGVSREKAKMYERLG--VRIVPMTSAHIDVREVLRLLGEQRITSLFVEGGSRIHDSFL 302
Query: 297 LEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G V+E++ Y++P LIG EA L + ++L +I+KIGPDI+I+A+
Sbjct: 303 RSGMVNEVVAYMAPKLIGGREAPTPVGGLGFSRLAEAMELDIRQIEKIGPDIKIVAK 359
>gi|119945176|ref|YP_942856.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase
and 5-amino-6-(5-phosphoribosylamino) uracil reductase
[Psychromonas ingrahamii 37]
gi|119863780|gb|ABM03257.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Psychromonas ingrahamii 37]
Length = 387
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 204/356 (57%), Gaps = 22/356 (6%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
SSPNP VGCVIV I+ GY + G HAE++AL A + +T Y+TLEPCS+
Sbjct: 28 SSPNPNVGCVIVANNIIVGEGYHQKAGLGHAEVNALAIAKDKAM---GATCYVTLEPCSH 84
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
FG TPPC AL K+GIK+VIIA+ DPNP V+G G+ L AGI V GL++ EA ++N G
Sbjct: 85 FGRTPPCALALTKAGIKRVIIAMVDPNPKVAGDGIKILEKAGIKVDLGLLKNEAMDLNRG 144
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F RMQ P V +K+ASSLD KT+L N SQWIT +R D +RA A+LTG TV
Sbjct: 145 FIKRMQVKEPRVTVKLASSLDGKTALKNGQSQWITGPAARCDVQYFRALQSAVLTGSATV 204
Query: 194 LKDNPRLNVR--SIKTS------------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
+ DNP LNVR S+K QP RI++DS+ +I ++ G + +
Sbjct: 205 IADNPSLNVRYESLKNHLDFDLTLRPAEIRQPIRIILDSHNKITLKEKLFSLEGKVLLVS 264
Query: 240 ----TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
DLP + ++I + G+++L+ ++ +L +IN+L +EAG L
Sbjct: 265 LLPRDDLPKNKNQFSADIEQLIGTDDGHGRINLKVLLTQLSDYEINDLWVEAGATLAGEF 324
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VD+ +LY +P L+G +A ++ LP + + + ++L + IG DIRI++
Sbjct: 325 FNHQLVDQFILYQAPKLMGSQARDLVNLPDYSKMIEVVQLSLQSVVLIGNDIRIIS 380
>gi|333895882|ref|YP_004469756.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
xylanolyticum LX-11]
gi|333111147|gb|AEF16084.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
xylanolyticum LX-11]
Length = 360
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 139/318 (43%), Positives = 200/318 (62%), Gaps = 8/318 (2%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ AKL + +++PNP VG VI+K+ RII GY + GG HAEI+AL NA DV
Sbjct: 5 MKRALQLAKLGVGHTNPNPLVGAVIIKDGRIIGEGYHEYYGGPHAEINALKNAKE---DV 61
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPC + G TPPC +A+IKSGIK V IA+ DPN LV+G+G+ +L AG++V
Sbjct: 62 NGATLYVTLEPCCHHGKTPPCVDAVIKSGIKNVFIAMEDPNELVAGRGIKKLEEAGLNVY 121
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA ++N F + P+V +K A ++D K S + S+WIT+++SR H
Sbjct: 122 TGLLKDEAEKLNEVFIKYITSREPYVILKSAMTIDGKISTFTGDSKWITNEKSREYVHKV 181
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI--DPFFRVLKGGGSCIF 237
R AI+ GI TV+KDNP L VR ++ P R+++DS+ RI D + K + I
Sbjct: 182 RGSVMAIMVGINTVIKDNPHLTVR-LQGYKNPLRVIVDSHGRIPLDANVIIDKSAKTLIA 240
Query: 238 TATDLPM-KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T +P K K L+DLG +V+ + KV L +I LG+R I+ + IE G LN + +
Sbjct: 241 TTDMMPHDKVKALKDLGVDVVTIEKKDNKVHLNKLIYTLGERGIDSILIEGGGTLNYSAL 300
Query: 297 LEGCVDELLLYISPILIG 314
EG VD+++ YI+P +IG
Sbjct: 301 KEGIVDKVMFYIAPKIIG 318
>gi|429885228|ref|ZP_19366825.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
cholerae PS15]
gi|429228024|gb|EKY33976.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
cholerae PS15]
Length = 365
Score = 245 bits (625), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 136/353 (38%), Positives = 213/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 22 FTTSPNPNVGCVITRGEKIVGEGFHFRVGEPHAEVHAMRQA---GELTRGATAYVTLEPC 78
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+ GL++ +A +N
Sbjct: 79 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGLLEADARALN 138
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 139 RGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 198
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 199 TVLADNASLAVRWHDLPSSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ--------- 249
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ E+ + N GK+DL+ ++ +L ++ +N++ +EAG QL +LI +
Sbjct: 250 TPSPVLRVASENA--ELCISAKN-GKLDLRELLAQLAQQHNVNQVWVEAGSQLAQSLIEQ 306
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 307 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 359
>gi|262166346|ref|ZP_06034083.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio mimicus VM223]
gi|262026062|gb|EEY44730.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio mimicus VM223]
Length = 367
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 214/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+G+GV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQMLRDAGIEVQIGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 SGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++T + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLAVRWHDLPQSVQTQYAETDLRQPLRVILDRQHQLHPELSLYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ ++ + N GK+DL+ ++ +L ++ +N++ +EAG QL +LI +
Sbjct: 252 TPSPVLRVASENA--DLCISAEN-GKLDLRELLAQLAQQHNVNQVWVEAGSQLAQSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+R++A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRVIA 361
>gi|416102894|ref|ZP_11589006.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|444346719|ref|ZP_21154683.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|348008478|gb|EGY48750.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|443541537|gb|ELT51964.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 374
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 214/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK +I+ G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + L+++G+ KVI A+ DPNP V+GKG+ L AGI
Sbjct: 70 RGATAYVTLEPCSHFGRTPPCAKGLVEAGVSKVIAAMCDPNPQVAGKGLQILADAGIQSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A ++N GF RM+ G P+V++K+A S+D KT++ + S+WIT ++R D +
Sbjct: 130 VGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMDVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNV-----------RSIKTS-HQPYRIVIDSYLRIDPFFR 227
RA++ A+L+ TVL D+P LNV R ++ + QP R+++DS ++ F+
Sbjct: 190 RAKASAMLSTSQTVLADDPSLNVHWAELPNETQARYVQENLRQPVRVILDSTHKVRSDFK 249
Query: 228 VLKG------GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
V G F T P + L+ L + G+ LQA++ ELGKR+IN
Sbjct: 250 VFLTDAPVWLAGEDDFQLTGFPTSTEYLK--------LDRSHGESRLQALMTELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQ 340
L +EAG L ALI E VDEL++Y++P L+G+ A ++ LP L + +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDHAKDLCHLPHLTRLADAPLWQLQSCE 361
Query: 341 KIGPDIRIL 349
G D++++
Sbjct: 362 PTGDDLKLI 370
>gi|289549140|ref|YP_003474128.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484]
gi|289182757|gb|ADC90001.1| riboflavin biosynthesis protein RibD [Thermocrinis albus DSM 14484]
Length = 353
Score = 244 bits (624), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 134/351 (38%), Positives = 210/351 (59%), Gaps = 7/351 (1%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+L + PNP VGCV+VK+ +IIS GY + G HAE+ AL A G +
Sbjct: 1 MGRALELARLRKGLTHPNPTVGCVVVKDGKIISEGYHERAGAPHAEVVALSKA---GQNA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ST+Y+TLEPCS++G TPPCT A+I++G+K+V++A DPNP V G G+ +L +AGI V
Sbjct: 58 KDSTLYVTLEPCSHYGRTPPCTNAIIEAGVKRVVVATLDPNPKVMGSGIERLRAAGIQVD 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++++EA ++N FF + + P++ +K A S+D + S+WITS+ESR +H
Sbjct: 118 VGVLEEEARQLNEDFFVYITQNRPYITLKWAQSIDGSLATKTGDSKWITSRESREFAHRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLR--IDPFFRVLKGGGSCIF 237
RA + AIL G+ TV+KD+P L VR+ QP R+V+D YLR + V + +
Sbjct: 178 RAEATAILVGVNTVVKDDPLLTVRAFLWERQPIRVVLDPYLRTPLQANLMVDTSAKTILV 237
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
T + K K LED+G V+ G+VDL+ ++ + +++I L +E G + I
Sbjct: 238 TCSQKEDKVKKLEDMGVSVVKAECVKGRVDLRWLMRWMHQQEIMHLMVEGGARTLEGFIE 297
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
EG D +++++ P+LIG + + P L I L+ + ++G D+ I
Sbjct: 298 EGLWDRIVVFLGPLLIGNGIRVRS-PGAEKLMDAIPLRKRRLWQLGEDVAI 347
>gi|433459946|ref|ZP_20417582.1| riboflavin biosynthesis protein RibD [Halobacillus sp. BAB-2008]
gi|432192062|gb|ELK48975.1| riboflavin biosynthesis protein RibD [Halobacillus sp. BAB-2008]
Length = 378
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 130/318 (40%), Positives = 196/318 (61%), Gaps = 9/318 (2%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M++A++ A ++ +SPNP V V+VK+ +++ G G HAE+ AL A G
Sbjct: 23 MSMAVEMASSTVGQTSPNPSVAAVVVKDNQVVGVGVHVKAGEAHAEVHALRMA---GEKA 79
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +Y+TLEPCS+ G TPPC +A+I +GI++VIIA +DPNP VSG+G+ + + G+ V+
Sbjct: 80 DGAEIYVTLEPCSHHGRTPPCAQAVIDAGIRRVIIASHDPNPRVSGRGIEMMRAHGLEVE 139
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA ++N FF +Q G+P+VR+K A SLD K + SQWIT +++R D H +
Sbjct: 140 MGVLKAEADKLNRAFFHSIQTGMPYVRLKSAMSLDGKIATSTGESQWITGEKARADGHRY 199
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG--SCIF 237
R S AIL GI TVL DNP+L R P RIV+D++LRI P ++++ G + IF
Sbjct: 200 RHLSDAILVGINTVLMDNPKLTTRMEGQGSHPVRIVMDTHLRIPPSSQLIQNGEAPTWIF 259
Query: 238 TATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T + K+ + E+ H EVI + + VD V+ LGK++I L +E G + A +
Sbjct: 260 TLENDQKKKDLFEEQDHVEVIRMEGSTIAVD--DVLRYLGKKRITSLLVEGGATIADAFV 317
Query: 297 LEGCVDELLLYISPILIG 314
G VDE + YI+P LIG
Sbjct: 318 RAGKVDETVTYIAPKLIG 335
>gi|258627340|ref|ZP_05722124.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
mimicus VM603]
gi|258580378|gb|EEW05343.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
mimicus VM603]
Length = 367
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 211/353 (59%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+G+GV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQMLRDAGIEVEVGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ IL+
Sbjct: 141 RGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASTILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP+R+++D ++ P + + S + A
Sbjct: 201 TVLADNASLAVRWHDLPQSVQAQYAETDLRQPFRVILDRQHQLHPELALYQTSSSVLRVA 260
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
++ ++ + N GK+DL ++ +L ++ +N++ +EAG QL +LI +
Sbjct: 261 SE-----------NADLCISAEN-GKLDLHELLAQLAQQHNVNQVWVEAGGQLAQSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|254523112|ref|ZP_05135167.1| riboflavin biosynthesis protein RibD [Stenotrophomonas sp. SKA14]
gi|219720703|gb|EED39228.1| riboflavin biosynthesis protein RibD [Stenotrophomonas sp. SKA14]
Length = 396
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/363 (38%), Positives = 205/363 (56%), Gaps = 48/363 (13%)
Query: 11 SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEP 70
+ + PNP VGCVI +R++ G+ + GG HAE+ AL A G + +T Y+TLEP
Sbjct: 59 AYTTRPNPMVGCVIAHGERVVGQGWHQRAGGPHAEVFALREA---GSEARGATAYVTLEP 115
Query: 71 CSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEI 130
C+++G TPPC ALI++G+ +V+ A+ DP P V G G L AGI V +GLM +A E+
Sbjct: 116 CAHYGRTPPCALALIEAGVSRVVAAMRDPFPKVDGGGFDLLREAGIDVSEGLMAAQAREL 175
Query: 131 NIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGI 190
N GF SR++R PW+R+K+A+SLD +T++ + +S+WIT +R D WRAR+ AILTG
Sbjct: 176 NKGFLSRVERNRPWLRVKLAASLDGRTAMADGTSKWITGAAAREDVQHWRARAGAILTGA 235
Query: 191 GTVLKDNPRLNVRSIKTS-HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKIL 249
TVL D+P L VR P R+V+DS LR RV +GG ++
Sbjct: 236 DTVLADDPMLTVRLADAEVMPPLRVVLDSRLRSLECSRVREGGTPTLYL----------- 284
Query: 250 EDLGHEVIVLPNNL------------GKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
H IV P + G +DL AV+ L R INE+H EAG L AL+
Sbjct: 285 ----HNAIVSPPDAADAAFASVALRHGHLDLGAVLALLADRGINEVHTEAGATLAGALLR 340
Query: 298 EGCVDELLLYIS---------PILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G VDELLLY++ P+L G + ++D++ +L+ + +++G D+R+
Sbjct: 341 GGWVDELLLYLAPTLLGDSGRPLLAGLGID--------AMDQQRRLRVVDQRQVGEDLRL 392
Query: 349 LAR 351
L R
Sbjct: 393 LLR 395
>gi|409398019|ref|ZP_11248871.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. Chol1]
gi|409117525|gb|EKM93953.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. Chol1]
Length = 367
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 203/365 (55%), Gaps = 25/365 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + S+ PNPRVGCVIV + ++ G+ G HAE+ AL A G
Sbjct: 9 MARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQA---GERA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EAL+K+G+ +V+ A+ DPNP V+G+G+ L SAGI V
Sbjct: 66 RGATAYVTLEPCSHHGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGRGLQLLRSAGIEVA 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R +
Sbjct: 126 SGVLEAEARELNCGFIKRMESGLPFVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA S +LTG TVL D RL VR ++ P R+++D R+ PF
Sbjct: 186 RAGSSVVLTGADTVLMDGARLTVRGPELGLDAETTALALQRPPLRVLVDGRRRVPLDAPF 245
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ AT + + HE++VL +VDL A++ EL R NE+ +
Sbjct: 246 FQA-----GPALVATAMSGDAEACRVASHELLVLGQR--QVDLTALLRELAARGANEVLV 298
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G +DE ++++ +G + P + + +LK +I+ +G D
Sbjct: 299 EAGARLVGAFARLGLIDEYQIFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDD 358
Query: 346 IRILA 350
+I+A
Sbjct: 359 WKIVA 363
>gi|358010935|ref|ZP_09142745.1| pyrimidine deaminase [Acinetobacter sp. P8-3-8]
Length = 369
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 139/354 (39%), Positives = 213/354 (60%), Gaps = 19/354 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+ +A+ +I + PNP VGCVIVKE I+ G T GG HAE+ A+ A G
Sbjct: 20 MRQAIAEAEKAIYRTRPNPAVGCVIVKEGVIVGRGATAPVGGPHAEVFAMREA---GEQA 76
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC + L+++G+ KV+IA DPNPLV+GKGV L AGI V
Sbjct: 77 RGATAYVTLEPCAHYGRTPPCAKGLVEAGVAKVVIACADPNPLVAGKGVQILQDAGIEVV 136
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+ EA N GF M G+P+VR+K+ASSLD +T++ + S+WIT E+R D W
Sbjct: 137 TDVCTTEAEVQNKGFLKAMATGMPYVRLKVASSLDGRTAMASGESKWITGTEARQDVQHW 196
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH-----QPYRIVIDSYLRIDPFFRVLKGGGS 234
RA S A++TGI TVL D+P+LNVR++ QP RI++D R+ ++L+ +
Sbjct: 197 RAISGAVITGIETVLADDPQLNVRTLPNIDLENIVQPKRIILDRQGRLPLTAQILQQPET 256
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
+ P +++ L DLG V+ L K DL A + +L +I ++ +EAG L+TA
Sbjct: 257 VMVMG---PFRQE-LADLG--VVQLAVQSLK-DLLATLKDL---QIYDVLVEAGATLSTA 306
Query: 295 LILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+ E VDE++ Y++P +G++ S+ ++++ K ++ ++G DIR+
Sbjct: 307 FLQERLVDEMISYVAPTFLGQSARAMFNAEFESMAQQLRFKLIDVSQMGDDIRL 360
>gi|407684438|ref|YP_006799612.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
'English Channel 673']
gi|407246049|gb|AFT75235.1| Riboflavin biosynthesis protein RibD [Alteromonas macleodii str.
'English Channel 673']
Length = 379
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 146/364 (40%), Positives = 208/364 (57%), Gaps = 18/364 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAA-AQGY 57
M A+Q A+ +SPNPRVGCVIV E ++ GY G HAE+ AL A+ A+
Sbjct: 13 MAKAIQLAQQGRFTTSPNPRVGCVIVDENNHLLGQGYHIQAGTPHAEVHALRQASNARPQ 72
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+T Y+TLEPCS+FG TPPC AL+++ + +V+IA+ DPNP V G G++ L AGI
Sbjct: 73 GAKGATAYVTLEPCSHFGRTPPCAVALVEAKVARVVIAMTDPNPNVCGNGISILQEAGIE 132
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V +M EA +N GF RM G P+VR+K+ SLD K +L N SQWIT E+R D
Sbjct: 133 VVSEVMAAEAAALNPGFIKRMLTGKPFVRVKLGISLDGKIALQNGVSQWITGAEARRDVQ 192
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPFFRV 228
+RA+SC +LTG GTV DNP L VR + QP R+VID + +
Sbjct: 193 QYRAQSCVVLTGSGTVKADNPSLLVREQEAQFTNYPLEHIRQPARVVIDGKSALSRGY-A 251
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
L G+ TAT + + + + GK++L +++ LG ++ NE+ +EAG
Sbjct: 252 LFNDGNLTLTAT----SQAHPDTATQHYLSVDEKDGKLNLHSLMSALGDKQYNEVWVEAG 307
Query: 289 YQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
L AL+ EG VDEL+ Y +P L+G+ +M LP SL++ I L E +++G DI+
Sbjct: 308 PGLAGALLQEGLVDELICYQAPKLLGDKGVSMVNLPALTSLNECISLSLIENRQVGNDIK 367
Query: 348 ILAR 351
++ R
Sbjct: 368 LIFR 371
>gi|379009545|ref|YP_005267358.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Wigglesworthia glossinidia endosymbiont of
Glossina morsitans morsitans (Yale colony)]
gi|375158069|gb|AFA41135.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Wigglesworthia glossinidia endosymbiont of
Glossina morsitans morsitans (Yale colony)]
Length = 380
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 145/365 (39%), Positives = 209/365 (57%), Gaps = 20/365 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
++ A + A+L +SPNP VGCVIVK II GY K G +HAEI AL + V
Sbjct: 13 LSRAFELARLGRFTTSPNPNVGCVIVKNNCIIGEGYHKKSGSDHAEISALKSTKTC---V 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
STVY+TLEPCSY G TP C AL+K+ +KKVI + DPNP VSGKG L +GI VK
Sbjct: 70 QGSTVYVTLEPCSYHGKTPSCAHALVKAKVKKVIASTIDPNPKVSGKGFEILKKSGIEVK 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
MQ A +N+GFF RM+ GIPW+++K+A++LD +T+ S+WITS +SR +
Sbjct: 130 YNFMQNVAKNLNVGFFKRMKSGIPWIKLKLAATLDGRTATKYGVSKWITSLKSRQNVQEL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS------------HQPYRIVIDSYLRIDPFFR 227
RA S AIL+ ++LKD +L VR + S QP RIVID+ +I P
Sbjct: 190 RAESDAILSSATSILKDQSKLTVRWDEFSRKIKNIYPKNEVRQPIRIVIDNLNQITPENL 249
Query: 228 VLKGGGSCIFTAT---DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELH 284
K G + T +L I + + H + + N ++L +++++LG IN +
Sbjct: 250 FFKEQGKILLVRTKKDNLNWPSSIEKIVLHHINDVDQNSKNINLLSLMLKLGNFNINNIL 309
Query: 285 IEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIG 343
IE+G +L+ A + G +DE++LY +P ++GE A+ +F L LD K + +IG
Sbjct: 310 IESGARLSGAFLNAGLLDEIILYQAPKILGEHAFPLFFLSKIIDLDNAPKFLISNVYRIG 369
Query: 344 PDIRI 348
D+R+
Sbjct: 370 EDVRL 374
>gi|304315557|ref|YP_003850702.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
gi|302777059|gb|ADL67618.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
thermosaccharolyticum DSM 571]
Length = 356
Score = 244 bits (624), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 141/318 (44%), Positives = 199/318 (62%), Gaps = 8/318 (2%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ AKL + +++PNP VG VIVK RII GY + GG HAEI+AL + DV
Sbjct: 1 MKRALQLAKLGLGHTNPNPLVGAVIVKNGRIIGEGYHEYYGGPHAEINALKSVKE---DV 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +Y+TLEPC ++G TPPC +A++KSGIK V IA+ DPN LVSGKG+ L AG++V
Sbjct: 58 IGAQLYVTLEPCCHYGKTPPCVDAIVKSGIKDVFIAMEDPNKLVSGKGIKHLKEAGLNVY 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++EA +IN F + P+V +K A ++D K + Y S+WIT+++SR HI
Sbjct: 118 TGLLKEEAEKINEIFIKYITTKKPYVILKSAMTIDGKIATYTGDSKWITNEKSREHVHIM 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVL--KGGGSCIF 237
R AI+ G+ TV+KDNP L R I P R+V+DS RI V+ K + +
Sbjct: 178 RGCVMAIMVGVNTVIKDNPYLTAR-IDGFKNPLRVVVDSRGRIPLEANVVIDKSAKTIVA 236
Query: 238 TATDLPMKR-KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T +P K+ K L DLG +V VL G+VDL+ ++ LG+R I+ + IE G LN + +
Sbjct: 237 TTDMMPYKKVKALRDLGVDVFVLDKLNGEVDLKKLMDMLGERGIDSVIIEGGGTLNYSAL 296
Query: 297 LEGCVDELLLYISPILIG 314
EG VD+++ YI+P +IG
Sbjct: 297 KEGIVDKVMFYIAPKIIG 314
>gi|365873644|ref|ZP_09413177.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio velox DSM
12556]
gi|363983731|gb|EHM09938.1| riboflavin biosynthesis protein RibD [Thermanaerovibrio velox DSM
12556]
Length = 377
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 124/348 (35%), Positives = 210/348 (60%), Gaps = 6/348 (1%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL A+ ++ SPNP+VGCV+V++++++ GY + GG HAE++AL A +
Sbjct: 22 MRMALSLAARGGVSVSPNPKVGCVLVRDEKVVGIGYHRRYGGPHAEVEALAMARDK---A 78
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST Y+TLEPC++ G TPPC L ++G+ +V+ DPNP V+G+G+ L S+G+ V
Sbjct: 79 RGSTAYVTLEPCAHHGKTPPCAPRLAEAGVSRVVYGFRDPNPKVNGEGLRILESSGVEVI 138
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+++++ IN GF R+ G PWV +K A S+D L + S+WIT +R +H+
Sbjct: 139 GPVLERDCKWINRGFIRRITLGRPWVTLKGALSVDGTACLDSGESKWITGPMARQKAHLL 198
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
RA A+L GI TV+ D+P L VR++ P ++V+D +LRI +VLKGG +FT+
Sbjct: 199 RAEHDAVLVGINTVMNDDPELTVRALD-GESPKKVVLDGHLRIPLEAKVLKGGERIVFTS 257
Query: 240 TDLPMKR-KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
+ PM++ L ++G +I +P+ G +DL V++ELG+ +N L +E G ++ A +
Sbjct: 258 QEAPMEKLTCLRNMGVTLIQVPSVGGMLDLSQVLLELGRLGVNNLLVEGGARVLGAFVDS 317
Query: 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G D + L+++P ++G +F L ++++ H +++ G D+
Sbjct: 318 GLGDMVSLFVAPSILGRGLQIFESFAIQGLGSRVEITDHMVRQAGHDL 365
>gi|387120051|ref|YP_006285934.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|416032844|ref|ZP_11572950.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|429732269|ref|ZP_19266884.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans Y4]
gi|347999491|gb|EGY40317.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|385874543|gb|AFI86102.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429156512|gb|EKX99142.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans Y4]
Length = 374
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 211/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK +I+ G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC +FG TPPC + L ++G+ KVI A+ DPNP V+GKG+ L AGI
Sbjct: 70 RGATAYVTLEPCFHFGRTPPCAKGLAEAGVSKVIAAMYDPNPQVAGKGLQILADAGIQSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A ++N GF RM+ G P+V++K+A S+D KT++ + S+WIT ++R D +
Sbjct: 130 VGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMDVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR + + QP R+++DS ++ F+
Sbjct: 190 RAKASAILSTSQTVLADDPSLNVRWAELPNETQARYAQENLRQPVRVILDSTHKVRSDFK 249
Query: 228 VLKG------GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
V G F T P + L+ L + G+ LQA++ ELGKR+IN
Sbjct: 250 VFLTDAPVWLAGEDDFQLTGFPASTEYLK--------LDRSHGESRLQALMTELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQ 340
L +EAG L ALI E VDEL++Y++P L+G+ A ++ LP L + +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDHARDLCHLPHLTRLADAPLWQLQSCE 361
Query: 341 KIGPDIRIL 349
G D++++
Sbjct: 362 PTGDDLKLI 370
>gi|415754797|ref|ZP_11480731.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|348656134|gb|EGY71537.1| riboflavin biosynthesis protein RibD [Aggregatibacter
actinomycetemcomitans D17P-3]
Length = 374
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 211/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK +I+ G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTTTPNPSVGCVLVKNGKIVGKGFHFKAGEPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC +FG TPPC + L ++G+ KVI A+ DPNP V+GKG+ L AGI
Sbjct: 70 RGATAYVTLEPCFHFGRTPPCAKGLAEAGVSKVIAAMYDPNPQVAGKGLQILADAGIQSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A ++N GF RM+ G P+V++K+A S+D KT++ + S+WIT ++R D +
Sbjct: 130 VGLLEEKAEQLNKGFLKRMRTGKPFVQLKLAMSIDGKTAMASGESKWITGAQARMDVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR + + QP R+++DS ++ F+
Sbjct: 190 RAKASAILSTSQTVLADDPSLNVRWAELPNETQARYAEENLRQPVRVILDSTHKVRSDFK 249
Query: 228 VLKG------GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
V G F T P + L+ L + G+ LQA++ ELGKR+IN
Sbjct: 250 VFLTDAPVWLAGEDDFQLTGFPASTEYLK--------LDRSHGESRLQALMTELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQ 340
L +EAG L ALI E VDEL++Y++P L+G+ A ++ LP L + +
Sbjct: 302 TLWVEAGATLAGALIAENLVDELIIYMAPKLLGDHARDLCHLPHLTRLADAPLWQLQSCE 361
Query: 341 KIGPDIRIL 349
G D++++
Sbjct: 362 PTGDDLKLI 370
>gi|229916731|ref|YP_002885377.1| riboflavin biosynthesis protein RibD [Exiguobacterium sp. AT1b]
gi|229468160|gb|ACQ69932.1| riboflavin biosynthesis protein RibD [Exiguobacterium sp. AT1b]
Length = 354
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 205/356 (57%), Gaps = 15/356 (4%)
Query: 1 MTLALQQAKLSINSSP-NPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q AK + + NP VG V+VK+ RI+ G G HAE+ A+ A A
Sbjct: 5 MEQAIQLAKSADGQTGVNPLVGAVLVKDGRIVGMGAHLKAGEPHAEVHAIRMAGAA---A 61
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
Y +T+Y+TLEPCS+ G TPPC + +++SGIK+V+IA+ DPNPLV+G G+ +L +AG+ V
Sbjct: 62 YGATLYVTLEPCSHHGKTPPCADLIVESGIKRVVIAMKDPNPLVAGNGIMRLQAAGVEVD 121
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA +N F ++ P+V +K A+SLD K +L SQW+TS E+R D H
Sbjct: 122 VGLLEAEARALNPAFLRSLETKRPYVILKTATSLDGKVALETGESQWVTSSEARRDVHEL 181
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS----C 235
RA AILTGIGTVL D+P L VR + + QP R+V+D LR+ PF L
Sbjct: 182 RATVDAILTGIGTVLADDPSLTVRLDRVTRQPKRVVLDRDLRL-PFASTLARTAEDVPVL 240
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
+FT++D +R+ + G E+ L V+ L I + IEAG L T+L
Sbjct: 241 LFTSSDEAERRERAKAAGIEL------FDYTSLGTVLETLYANGIGRVLIEAGPTLVTSL 294
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+ G VDE + Y SP + G + ++ ++D + H+++ IGPD++++ R
Sbjct: 295 LDGGYVDEWVAYQSPRVFGGKHGVYRSQQEGTIDGISRFTIHQVETIGPDLKVVLR 350
>gi|336315123|ref|ZP_08570035.1| riboflavin biosynthesis protein RibD [Rheinheimera sp. A13L]
gi|335880534|gb|EGM78421.1| riboflavin biosynthesis protein RibD [Rheinheimera sp. A13L]
Length = 374
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 135/355 (38%), Positives = 206/355 (58%), Gaps = 15/355 (4%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
+K ++PNP VG VIV++ I+ GY + GG HAE+ AL + + +T Y+T
Sbjct: 19 SKGRFTTAPNPNVGSVIVRDGEIVGEGYHRQAGGPHAEVFALRQSE---HLASGATCYVT 75
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS++G T PC AL+ +G+KKVI+A+ DPNPLV+GKG+ L AGI V+ GL++++A
Sbjct: 76 LEPCSHYGRTGPCALALVNAGVKKVIVAMLDPNPLVAGKGIQILKDAGIEVQVGLLEEKA 135
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+N GF SRM+R P++R+K+A+SLD + +L N SQWI+S ESR+D + RA+S A+L
Sbjct: 136 RALNPGFLSRMERQKPYIRLKLATSLDGRIALSNGKSQWISSAESRSDVQMMRAQSHAVL 195
Query: 188 TGIGTVLKDNPRLNVRSIKTS---------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFT 238
+ TVL DN RL VRS + QP RI++D L++ + G +
Sbjct: 196 STATTVLADNARLTVRSEGLAIPSLDDGSVRQPVRIILDRSLKLTGQELLFSQNGPIVLV 255
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
+ E I L + + L ++ L IN+L +EAG L +L
Sbjct: 256 HDK--QFKPAFEHPHVRFIALDADESGLSLNKLMPVLAAENINDLWVEAGAVLAGSLWQA 313
Query: 299 GCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
G VDEL++Y +P+L+G+ A M LP + L + + ++ +GPD+++ AR
Sbjct: 314 GLVDELIIYQAPVLLGDKAKAMLQLPNYSELSEAQYFVWTSVETLGPDLKLTARL 368
>gi|390933691|ref|YP_006391196.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
gi|389569192|gb|AFK85597.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
saccharolyticum JW/SL-YS485]
Length = 360
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 139/318 (43%), Positives = 200/318 (62%), Gaps = 8/318 (2%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ AKL + +++PNP VG VIVK+ RII GY + GG HAE++AL NA DV
Sbjct: 5 MKRALQLAKLGVGHTNPNPLVGAVIVKDGRIIGEGYHEYYGGPHAEVNALKNAKE---DV 61
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPC + G TPPC +A+IKSGIK V IA+ DPN LV+GKG+ +L AG++V
Sbjct: 62 SGATLYVTLEPCCHHGKTPPCVDAVIKSGIKNVFIAMEDPNELVAGKGIKKLKEAGLNVY 121
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ EA ++N F + P+V +K A ++D K S + S+WIT+++SR H
Sbjct: 122 TGLLKDEAEKLNEVFIKYITSREPYVILKSAMTIDGKISTFTGDSKWITNEKSREHVHKV 181
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI--DPFFRVLKGGGSCIF 237
R AI+ GI TV+KDNP L VR ++ P R+++DS+ RI D + K + I
Sbjct: 182 RGSVMAIMAGINTVIKDNPHLTVR-LQGYKNPLRVIVDSHGRIPLDANVIIDKSAKTLIA 240
Query: 238 TATDLPM-KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T +P K K L+DLG +V+ + KV L+ +I LGK+ I+ + IE G LN + +
Sbjct: 241 TTDMMPHDKVKALKDLGVDVVTIEKKDNKVHLKKLIHTLGKKGIDSILIEGGGTLNYSAL 300
Query: 297 LEGCVDELLLYISPILIG 314
EG VD+++ YI+ +IG
Sbjct: 301 KEGIVDKVMFYIALKIIG 318
>gi|307718159|ref|YP_003873691.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM
6192]
gi|306531884|gb|ADN01418.1| hypothetical protein STHERM_c04460 [Spirochaeta thermophila DSM
6192]
Length = 362
Score = 244 bits (623), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 126/337 (37%), Positives = 204/337 (60%), Gaps = 5/337 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+SPNP VG V+VK+ R++ G+ + G HAE+ AL A G + + +Y+TLEPC
Sbjct: 22 RTSPNPMVGAVVVKDGRVVGEGFHERAGLPHAEVAALSEA---GEEARGAEMYVTLEPCC 78
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPCT+A++K+G+++V++A DPNP V+GKG++ L AG+ V+ G++ +EA +N
Sbjct: 79 HWGRTPPCTDAILKAGVRRVVVACRDPNPQVAGKGLSILAEAGVEVEVGVLSREARWLNR 138
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM+RG PWV K+A+SLD + +L + S+WIT +E+R + H RA S ++TGIGT
Sbjct: 139 GFISRMERGRPWVVAKVAASLDGRIALPDGRSKWITGEEARWEVHRLRAGSDVLVTGIGT 198
Query: 193 VLKDNPRLNVR-SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILED 251
VL D+P VR P +V+D+ R+ RV++ G + R +E
Sbjct: 199 VLADDPAFTVRVPGGEGRDPGVVVLDTRGRLPVGARVVREGTVVMVGPGVDAGWRGEVER 258
Query: 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPI 311
G V+ + GKVD+QAV LG+ +N +EAG + A + G VDEL+++++P
Sbjct: 259 RGVRVVEVGIRDGKVDVQAVSRWLGEEGVNVAMVEAGAGVTGAFLEAGMVDELVVFVAPR 318
Query: 312 LIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
++GE L ++ + + E++++G D+ +
Sbjct: 319 VLGEGRGWVEGRVVEGLGER-EWEVREVRRVGEDVMV 354
>gi|373466611|ref|ZP_09557925.1| riboflavin biosynthesis protein RibD [Haemophilus sp. oral taxon
851 str. F0397]
gi|371760393|gb|EHO49082.1| riboflavin biosynthesis protein RibD [Haemophilus sp. oral taxon
851 str. F0397]
Length = 372
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 137/346 (39%), Positives = 208/346 (60%), Gaps = 21/346 (6%)
Query: 16 PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFG 75
PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+TLEPCS++G
Sbjct: 28 PNPSVGCVLVKNDEIVGEGFHFKAGQPHAERVALAQA---GENAKGATAYVTLEPCSHYG 84
Query: 76 YTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFF 135
TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A +IN GF
Sbjct: 85 RTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSEAGIESAVNLLNDQAEKINKGFL 144
Query: 136 SRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLK 195
RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L+ TVL
Sbjct: 145 KRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALLSTSATVLS 204
Query: 196 DNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLP 243
D+P LNVR ++KT + QP R+++DS RI P ++ S ++ ++ P
Sbjct: 205 DDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFL-THSPVWLVSNEP 263
Query: 244 MKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDE 303
D ++I+ NL L+ ++ ELGKR+IN L +EAG L+ +LI VDE
Sbjct: 264 RDLTGFPDFCEQIILPKENL----LKELMQELGKRQINTLWVEAGANLSGSLIDAKLVDE 319
Query: 304 LLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L++YI+P L+G+ A + LP L + +E+++IG DI++
Sbjct: 320 LIIYIAPKLLGDNARGLCQLPNLTQLADAPLWQLNELEQIGDDIKL 365
>gi|260775295|ref|ZP_05884192.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio coralliilyticus ATCC BAA-450]
gi|260608476|gb|EEX34641.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio coralliilyticus ATCC BAA-450]
Length = 368
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 140/367 (38%), Positives = 216/367 (58%), Gaps = 30/367 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A++ AK I ++PNP VGCVI + I+ G+ G HAE+ AL A G
Sbjct: 12 MSRAIELAKGGIYTTAPNPNVGCVITLDDDIVGEGFHYRAGEPHAEVHALRMA---GDKS 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+ + KVI A+ DPNP V+G+G+ L AGI V+
Sbjct: 69 VGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMEDPNPQVAGRGIKMLCDAGIEVQ 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N F RM+ G+P+V++K+A+S D +T+L N SQWITS ++R D +
Sbjct: 129 VGLLESDAMALNSAFIKRMKTGMPFVQLKMAASFDGQTALSNGQSQWITSPQARQDVQNY 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTS------HQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TV++DN LNVR S++ QP R+V+D ++ +
Sbjct: 189 RAQAGAILSTSKTVIEDNASLNVRWYELPESVQAKLPESEVRQPVRVVLDRQQQLSSELK 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIEL-GKRKINELHIE 286
F +TD +I+ +V L N+ ++DL++ L IN L +E
Sbjct: 249 ---------FYSTD---GERIVVSAQGDVAPLLNDSEQIDLKSTFANLVSHHNINHLWVE 296
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L ++LI EG VDEL+LY++P ++G + +F S+ + I+L +I+++G D
Sbjct: 297 AGATLASSLIKEGLVDELILYLAPKIMGSDGRGLFGALGLESMAEVIELDIQDIRQVGQD 356
Query: 346 IRILARF 352
IR++AR
Sbjct: 357 IRLVARL 363
>gi|345016468|ref|YP_004818821.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii
Rt8.B1]
gi|344031811|gb|AEM77537.1| riboflavin biosynthesis protein RibD [Thermoanaerobacter wiegelii
Rt8.B1]
Length = 360
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 136/304 (44%), Positives = 195/304 (64%), Gaps = 7/304 (2%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
++PNP VG VIVK +II GY + GG HAE++AL NA DV ST+++TLEPCS+
Sbjct: 19 TNPNPLVGAVIVKNGKIIGEGYHEYFGGPHAEVNALKNAVE---DVKGSTMFVTLEPCSH 75
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
+G TPPC E +IKSGIK+V IA+ DPNP VSG G+ +L AGI V G+M+K+A ++N
Sbjct: 76 YGKTPPCVEEIIKSGIKRVYIAMEDPNPKVSGNGIKRLKEAGIEVHVGMMEKDARKLNEI 135
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F + P+V +K A S+D K + YN +S+WIT+++SR +H R R AI+ G+ TV
Sbjct: 136 FVKYITTKFPFVILKSAMSIDGKIACYNGNSKWITNEKSRKFAHKIRGRVSAIMVGVNTV 195
Query: 194 LKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMK---RKILE 250
+ DNP L R ++ P RI++DS RI V++ + AT M RK LE
Sbjct: 196 INDNPMLTTR-LEGYKNPVRIIVDSRGRIPLDSNVIRDKTAKTIIATTELMPNNVRKKLE 254
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
D+ EVI+L N+ KV L+ ++I+LG+R I+ + IE G LN + + E VD+++ +ISP
Sbjct: 255 DMDIEVIILKNDNRKVPLKELMIKLGERGIDSVLIEGGGTLNWSALKERIVDKVMFFISP 314
Query: 311 ILIG 314
+IG
Sbjct: 315 RIIG 318
>gi|416892866|ref|ZP_11924190.1| RibD protein [Aggregatibacter aphrophilus ATCC 33389]
gi|347814564|gb|EGY31213.1| RibD protein [Aggregatibacter aphrophilus ATCC 33389]
Length = 374
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 211/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK +II G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTATPNPAVGCVLVKNGQIIGKGFHAKAGEPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC + L+ +G++ VI A+ DPNPLV+GKG+ L AGI
Sbjct: 70 RGATAYVTLEPCAHYGRTPPCAKGLVDAGVRNVIAAMCDPNPLVAGKGLGILADAGIESA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++ A E+N GF RM+ G P+V++K+A S+D KT++ N S+WIT ++R D +
Sbjct: 130 VGLLKENAEELNKGFLKRMRTGRPFVQLKLAMSIDGKTAMANGESKWITGAQARADVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL DNP LNVR + QP R+++DS ++ F
Sbjct: 190 RAKASAILSTSQTVLADNPSLNVRWAELPQEVQACYAEQHLRQPVRVILDSAHKVRSDFN 249
Query: 228 VLKGG------GSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
+ G F P + L+ ++PN + + LQA++ ELGKR+IN
Sbjct: 250 LFLTDSPVWLIGKDKFHLDGFPASTEYLQ-------LIPNQV-ESHLQALMSELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQ 340
+EAG L ALI E VDEL++Y++P L+G +A ++ LP L + +
Sbjct: 302 TFWVEAGATLAGALIAENLVDELIIYMAPKLLGDQARDLCHLPNLTKLADAPLWELQLCE 361
Query: 341 KIGPDIRIL 349
+G D++++
Sbjct: 362 PVGNDLKLI 370
>gi|145630038|ref|ZP_01785820.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
gi|144984319|gb|EDJ91742.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae R3021]
Length = 372
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 210/354 (59%), Gaps = 21/354 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERIALAQA---GENAKGTTAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMESGESKWITGSDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ T++ D+P LNVR ++KT + QP R+++DS RI P ++ S
Sbjct: 197 STSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFL-THSP 255
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ + P D ++I+ NL L+ V+ ELGKR+IN L +EAG L +L
Sbjct: 256 VWLVSSEPRDLTGFPDFCEQIILPKENL----LKEVMRELGKRQINTLWVEAGANLAGSL 311
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
I VDEL++YI+P L+G+ A + LP L + +E+++IG DI++
Sbjct: 312 IDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>gi|15605717|ref|NP_213094.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
gi|6225948|sp|O66534.1|RIBD_AQUAE RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|2982867|gb|AAC06487.1| riboflavin specific deaminase [Aquifex aeolicus VF5]
Length = 356
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 217/351 (61%), Gaps = 10/351 (2%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK + PNP VG V+VKE +I+ GY + G HAE+ AL A G
Sbjct: 10 MKLALSLAKKRKGYTHPNPTVGAVVVKEGKIVGLGYHEKAGKPHAEVMALGQA---GEKA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPC++FG TPPCT+A+I+SGIK+V++A DPNPL+SGKGV +L +AGI V
Sbjct: 67 KGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNAGIEVD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ ++EA E+N FF+ + + P++ +K A +LD K + SS+WITSKESR +HI
Sbjct: 127 VGVCEEEARELNEDFFTYITQERPYITLKWAQTLDGKLATLTGSSKWITSKESRKVAHIL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS-CIFT 238
R + A+L G+ TV+KD+P L VR + T QP RI++D L + +VL + I
Sbjct: 187 RREATAVLVGVNTVIKDDPHLTVRFVPTEKQPVRIILDPELEVPLSAKVLNTEEAPTIVI 246
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
K + L++ G +V++L +L+ ++ +L + +I L +E G + T+ + E
Sbjct: 247 TKKENEKAEKLKEKGVQVLILKG----FNLKNILKKLKELEIMHLMVEGGPRTLTSFLKE 302
Query: 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
G D ++++I+P ++GE ++ L S+++ +K++ +++ +G D+ I
Sbjct: 303 GFFDRIVVFIAPKIMGEGLSIGDLGIR-SIEESLKVRKKKVENLGEDLVIF 352
>gi|422336378|ref|ZP_16417351.1| riboflavin biosynthesis protein ribD [Aggregatibacter aphrophilus
F0387]
gi|353346564|gb|EHB90849.1| riboflavin biosynthesis protein ribD [Aggregatibacter aphrophilus
F0387]
Length = 374
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 140/369 (37%), Positives = 211/369 (57%), Gaps = 31/369 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK ++PNP VGCV+VK +II G+ G HAE+ AL A G +
Sbjct: 13 MQLALDLAKQGEFTATPNPAVGCVLVKNGQIIGKGFHAKAGEPHAEVMALREA---GENA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC+++G TPPC + L+ +G++ VI A+ DPNPLV+GKG+ L AGI
Sbjct: 70 RGATAYVTLEPCAHYGQTPPCAKGLVDAGVRNVIAAMCDPNPLVAGKGLGILADAGIESA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++ A E+N GF RM+ G P+V++K+A S+D KT++ N S+WIT ++R D +
Sbjct: 130 VGLLKENAEELNKGFLKRMRTGRPFVQLKLAMSIDGKTAMANGESKWITGAQARADVQQY 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL DNP LNVR + QP R+++DS ++ F
Sbjct: 190 RAKASAILSTSQTVLADNPSLNVRWAELPQEVQARYAEQHLRQPVRVILDSAHKVRSDFN 249
Query: 228 VLKGG------GSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
+ G F P + L+ ++PN + + LQA++ ELGKR+IN
Sbjct: 250 LFLTDSPVWLIGKDKFHLDGFPASTEYLQ-------LIPNQV-ESHLQALMSELGKRQIN 301
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQ 340
+EAG L ALI E VDEL++Y++P L+G +A ++ LP L + +
Sbjct: 302 TFWVEAGATLAGALIAENLVDELIIYMAPKLLGDQARDLCHLPNLIKLADAPLWELQLCE 361
Query: 341 KIGPDIRIL 349
+G D++++
Sbjct: 362 PVGNDLKLI 370
>gi|86147437|ref|ZP_01065749.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio sp. MED222]
gi|85834730|gb|EAQ52876.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio sp. MED222]
Length = 364
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 218/366 (59%), Gaps = 29/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M+ A+Q AK I ++PNP VGCVIV+ + +I+ G+ G HAE+ A+ A G
Sbjct: 2 MSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRMA---GDK 58
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPCS++G TPPC E LIK+ + KVI A+ DPNP V+G+G+ L AGI V
Sbjct: 59 AKGATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDAGIDV 118
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ GL++++A ++N F RMQ G+P+V++K+A+SLD +T+L N SQWITS E+R D
Sbjct: 119 EIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARRDVQN 178
Query: 179 WRARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFF 226
+RA+S A+L+ TV+ DN LNVR SIK + QP R+++D ++ P
Sbjct: 179 YRAKSGAVLSTSQTVIDDNASLNVRWAELPSSIKDHYAEDELRQPIRVILDRQNQLRPEL 238
Query: 227 RVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
++ + S + A + ++ V +G++DL ++ +L I+ + +E
Sbjct: 239 KLFQTPTSVLRVA-----------EASADIEVGTTEVGQLDLHDLMRQLPANHIDHIWVE 287
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L +LI VDEL+LY++P L+G + + S+ I L+ +++++G D
Sbjct: 288 AGATLAKSLIEARLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVRQVGVD 347
Query: 346 IRILAR 351
IRI+A+
Sbjct: 348 IRIVAK 353
>gi|419839651|ref|ZP_14363057.1| riboflavin biosynthesis protein RibD [Haemophilus haemolyticus
HK386]
gi|386909229|gb|EIJ73905.1| riboflavin biosynthesis protein RibD [Haemophilus haemolyticus
HK386]
Length = 372
Score = 244 bits (622), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 211/354 (59%), Gaps = 21/354 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNDEIVGEGFHFKAGQPHAERVALAQA---GENAKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ TVL D+P LNVR +++T + QP R+++DS RI P ++ S
Sbjct: 197 STSATVLADDPSLNVRWDEFPENLQTEYKKEDLRQPVRVILDSQHRIQPTHKLFL-THSP 255
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ ++ P D ++I+ NL L+ ++ ELGKR+IN L +EAG L +L
Sbjct: 256 VWLVSNEPRDLAGFPDFCEQIILPKENL----LKELMQELGKRQINTLWVEAGTNLAGSL 311
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
I VDEL++Y++P L+G+ A + LP L + +E+++IG DI++
Sbjct: 312 IDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>gi|389681899|ref|ZP_10173243.1| riboflavin biosynthesis protein RibD [Pseudomonas chlororaphis O6]
gi|388554434|gb|EIM17683.1| riboflavin biosynthesis protein RibD [Pseudomonas chlororaphis O6]
Length = 377
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 134/365 (36%), Positives = 211/365 (57%), Gaps = 25/365 (6%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AK ++ PNPRVGCVIV++ +++ G+ G HAE+ AL A A
Sbjct: 15 MARALELAAKGRFSTHPNPRVGCVIVRDGQVVGEGWHVRAGEPHAEVHALRAAGAN---A 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L GI+
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVDAGVARVVAAMQDPNPEVAGRGLQRLAQVGIATH 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M++EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R+
Sbjct: 132 SGVMEQEARALNRGFLKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RA + +LTG TVL DN RL VR ++ S P R++ID LR+ PF
Sbjct: 192 RAEASVVLTGADTVLADNARLTVRAEELGLDAEQTALAMSRPPLRVLIDGRLRVPLDAPF 251
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + T + + G E +++P G+VDL+ ++ EL R +NE+ +
Sbjct: 252 F---KAGPALVATCAAVEEQYAN----GPECLIVPGVDGQVDLRRLLSELAARGVNEVLV 304
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A +G VDE ++++ +G + P + + +LK E++ +G D
Sbjct: 305 EAGSRLAGAFAQQGLVDEYQIFVAGKFLGSSARPLLDWPLTQMREAPQLKIIEMRAVGDD 364
Query: 346 IRILA 350
R++A
Sbjct: 365 WRVIA 369
>gi|152979034|ref|YP_001344663.1| riboflavin biosynthesis protein RibD [Actinobacillus succinogenes
130Z]
gi|150840757|gb|ABR74728.1| riboflavin biosynthesis protein RibD [Actinobacillus succinogenes
130Z]
Length = 375
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 136/363 (37%), Positives = 208/363 (57%), Gaps = 19/363 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL A+ ++PNP VGCV+VK +I+ G+ G HAE+ A+ +A G +
Sbjct: 12 MQLALDLARRGRFTTTPNPNVGCVLVKHNKIVGTGFHFRAGEPHAEVMAIRDA---GDNT 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC + LI +G+ KVIIA DPNP V+G+G+ L AGI
Sbjct: 69 QGATAYVTLEPCSHYGRTPPCAQGLINAGVTKVIIATQDPNPQVAGRGLKMLQDAGIESA 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ ++A +N+GF RM+ G+P+V++K+A SLD +T++ + S+WIT + +R D
Sbjct: 129 VGLLAEKAEAVNLGFLKRMRTGMPFVQLKLAMSLDGRTAMASGESKWITGEAARADVQEG 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P+LNVR S+ QP R+++D R+ P R
Sbjct: 189 RAQASAILSTAETVLADDPQLNVRWEQLPQAVQIEYSLTDLRQPIRVILDRRHRVQPHHR 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+ + S ++ ++ P E I L L A++ ELGKR+IN + +EA
Sbjct: 249 LFR-IESPVWLVSEKPRDMSAFPAFC-EHIQLKTTENPTALYALMQELGKRQINTIWVEA 306
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L ALI + DEL++Y++P L+G +A + LP L + KIG D+
Sbjct: 307 GATLAGALIEQNLADELIIYMAPKLLGHQARGLCKLPHLTRLADAPQWTLQSAVKIGEDL 366
Query: 347 RIL 349
+ +
Sbjct: 367 KTV 369
>gi|84394363|ref|ZP_00993084.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio splendidus
12B01]
gi|84375022|gb|EAP91948.1| Pyrimidine reductase, riboflavin biosynthesis [Vibrio splendidus
12B01]
Length = 364
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 217/366 (59%), Gaps = 29/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M+ A+Q AK I ++PNP VGCVIV+ + +I+ G+ G HAE+ A+ A G
Sbjct: 2 MSRAIQLAKRGIYTTAPNPNVGCVIVQTDGQIVGEGFHAKAGEPHAEVHAMRMA---GDK 58
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPCS++G TPPC E LIK+ + KVI A+ DPNP V+G+G+ L AGI V
Sbjct: 59 AKGATAYVTLEPCSHYGRTPPCAEGLIKAQVAKVICAMQDPNPKVAGRGIKMLRDAGIEV 118
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ GL++++A ++N F RMQ G+P+V++K+A+SLD +T+L N SQWITS E+R D
Sbjct: 119 EIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSPEARRDVQN 178
Query: 179 WRARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFF 226
+RA+S A+L+ TV+ DN LNVR SIK + QP R+++D ++ P
Sbjct: 179 YRAKSGAVLSTSQTVIDDNASLNVRWAELPSSIKDHYAEDELRQPIRVILDRQNQLRPEL 238
Query: 227 RVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
++ + S + A + ++ V G++DL ++ +L I+ + +E
Sbjct: 239 KLFQTPTSVLRVA-----------EASADIEVGTTEAGQLDLHDLMRQLPANHIDHIWVE 287
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L +LI VDEL+LY++P L+G + + S+ I L+ +++++G D
Sbjct: 288 AGATLAKSLIEAQLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVRQVGVD 347
Query: 346 IRILAR 351
IRI+A+
Sbjct: 348 IRIVAK 353
>gi|378774453|ref|YP_005176696.1| riboflavin biosynthesis protein RibD [Pasteurella multocida 36950]
gi|356597001|gb|AET15727.1| riboflavin biosynthesis protein RibD [Pasteurella multocida 36950]
Length = 376
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 143/364 (39%), Positives = 209/364 (57%), Gaps = 23/364 (6%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ A K ++PNP VGCV+VK+ I+ G+ G HAE+ AL A G +
Sbjct: 12 MQMALELAEKGQFTTTPNPSVGCVLVKDGIIVGRGFHVKAGEAHAEVMALREA---GENA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC + LI +G+ KV+ A+ DPNP V+G+G+ L AGI
Sbjct: 69 RGATAYVTLEPCSHVGRTPPCAQGLIDAGVVKVVSAMCDPNPQVAGRGLRMLSDAGIESA 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ ++A +N GF RM+ G P+V++K+A SLD +T++ N S+WIT + +R D
Sbjct: 129 VGLLAEKAEWLNRGFLKRMRTGRPYVQLKMAMSLDGRTAMANGESKWITGELARADVQAE 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ AIL+ TVL D+P LNVR +K + QP R+++DS R+ P R
Sbjct: 189 RAKASAILSTSATVLADDPLLNVRWQQLPDKVKADYTQAQLRQPVRVILDSQHRVQPSHR 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
+ + R +LE H E I L + L ++ ELG+R+IN L IE
Sbjct: 249 LFSLSSPVWLVSQ---TARSLLEFPAHCEQIQLSASTNA--LADLMAELGQRQINTLWIE 303
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKL-KFHEIQKIGPD 345
AG L ALI VDEL++YI+P L+G+A PH S + L + H I+K+G D
Sbjct: 304 AGATLAGALIEAKLVDELIIYIAPKLLGDAARGLCKLPHLSTLAEASLWQLHSIEKLGDD 363
Query: 346 IRIL 349
++ +
Sbjct: 364 LKTI 367
>gi|90023098|ref|YP_528925.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Saccharophagus degradans 2-40]
gi|89952698|gb|ABD82713.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Saccharophagus degradans 2-40]
Length = 365
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 135/353 (38%), Positives = 215/353 (60%), Gaps = 8/353 (2%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKE-KRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
MT A+Q A+ + ++PNPRVGCV+V I+ GY G HAE++A+ +A A
Sbjct: 12 MTRAMQLAREGTYTTTPNPRVGCVLVDAANNIVGEGYHVRAGEGHAEVNAIADAGAA--- 68
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPCS+ G T PC EAL+ +G+ +V+ + DPNP V+G+G+ L +AGI V
Sbjct: 69 ARGTTAYVTLEPCSHTGKTGPCCEALVAAGVSRVVYGMEDPNPKVAGRGLDHLEAAGIQV 128
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+++ +AYE+N GF RM++G+P +R+K+A SLD +T++ + +S+WITS +R+D
Sbjct: 129 DGPVLEYDAYELNPGFIKRMRQGLPLIRIKMAMSLDGRTAMADGTSKWITSPRARDDVQR 188
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVL-KGGGSCIF 237
RARSCA++TG+ +VL D+P L VR + QP R+++DS LR+ +L + G + I
Sbjct: 189 LRARSCALITGVDSVLLDDPSLTVRLSDDARQPLRVIVDSKLRLPKDAAILSQPGKTVIA 248
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
T ++ + D E+ LP G+V LQA+ +L +++ NE+ +E G L A +
Sbjct: 249 TCANVNQAQSPYGDT--EIWTLPEKDGRVSLQALARKLAQQECNEVLVETGATLAGAFVS 306
Query: 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
G VDEL++Y++ L+G P + ++ L +I+ IG + RI A
Sbjct: 307 SGLVDELVIYMAGKLLGSTARPLFDIPISKMSAQLPLSITDIRAIGDNWRITA 359
>gi|388258756|ref|ZP_10135931.1| riboflavin biosynthesis protein RibD [Cellvibrio sp. BR]
gi|387937515|gb|EIK44071.1| riboflavin biosynthesis protein RibD [Cellvibrio sp. BR]
Length = 374
Score = 243 bits (621), Expect = 8e-62, Method: Compositional matrix adjust.
Identities = 132/350 (37%), Positives = 210/350 (60%), Gaps = 23/350 (6%)
Query: 16 PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFG 75
PNPRVGCV+VK+ +II+ G+ G HAE++AL A G + +T Y++LEPCS+ G
Sbjct: 27 PNPRVGCVLVKDGQIIAEGWHIRAGEAHAEVNAL---RAAGENARGATAYVSLEPCSHTG 83
Query: 76 YTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFF 135
T PC++ALI +G+ +V+ A+ DPNPLVSG G+A L +AG+ V L++ +A +N G+
Sbjct: 84 RTGPCSQALIDAGVARVVYAMEDPNPLVSGDGIAMLRAAGVQVDGSLLEDDARALNPGYI 143
Query: 136 SRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLK 195
RM+R +P+VR K+A SLD +T++ + S+WIT +R D RARSCAI++G+ ++L+
Sbjct: 144 KRMERKLPFVRCKLAMSLDGRTAMESGESKWITGPNARADVQRLRARSCAIISGVDSILQ 203
Query: 196 DNPRLNVRSIK---------TSHQPYRIVIDSYLRIDP---FFRVLKGGGSCIFTATDLP 243
DN L VR + + P R+++DS LR+ F+ L S I +
Sbjct: 204 DNSSLTVRVDELDLPNAQEAAAKHPLRVILDSTLRLSRNALLFKQL----SPILLVHNGS 259
Query: 244 MKRKILEDLGH--EVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCV 301
+ E E++ +P ++DL A++ EL KR+ NE+ +E G L + + G +
Sbjct: 260 VDAAQCEGWPEFVELLAVPAKDDRIDLTALLRELAKRQCNEVLVETGATLAGSFLRRGLL 319
Query: 302 DELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
DE+++Y++P L+G A +F LP ++ + LK +I+ +G D RI A
Sbjct: 320 DEIIIYMAPKLLGSNARPIFDLPLD-TMSSSLALKIKDIRAVGRDWRITA 368
>gi|242240315|ref|YP_002988496.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech703]
gi|242132372|gb|ACS86674.1| riboflavin biosynthesis protein RibD [Dickeya dadantii Ech703]
Length = 370
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 141/362 (38%), Positives = 215/362 (59%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ I +SPNP VGCVIV++ ++ G+ + G HAE+ AL A G
Sbjct: 10 MARALELARRGIFTTSPNPNVGCVIVRDGEVVGEGFHQKAGEPHAEVHALRMA---GDKA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 67 QGATVYVTLEPCSHHGRTPPCADALIAAGVARVVAAMQDPNPQVAGRGLHRLHQAGIEVC 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M A IN GF RM+ G P+V++K+ +S+D +T++ + SQWITS ++R D +
Sbjct: 127 HGVMADAAENINRGFLKRMRTGFPYVQLKMGASVDGRTAMASGESQWITSPQARQDVQRF 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RARS AIL+ TVL D+P L VR ++ QP RI++DS R+ P R
Sbjct: 187 RARSSAILSSSATVLADDPSLAVRWQELDADTQRIYPQESLRQPVRIIVDSQSRVTPEHR 246
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
++ GS P + + E I +P +DL A+++ LGKR+IN + +EA
Sbjct: 247 LVSQPGSTWLAR---PQRDGLAWPSSVEQIDVPLYGEGLDLVALMMLLGKRQINSVWVEA 303
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEAYN-MFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G +L AL+ VDEL++YI+P L+G+A + L +L + + ++ ++GPD+
Sbjct: 304 GPRLAGALLQANVVDELIVYIAPRLLGDAARPLCVLSGVETLSQTPEFLIADVCQVGPDV 363
Query: 347 RI 348
R+
Sbjct: 364 RL 365
>gi|339779701|gb|AEK06390.1| putative riboflavin biosynthesis protein [uncultured bacterium
DY94]
Length = 378
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 209/362 (57%), Gaps = 17/362 (4%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGCV+VK+ I+ G+ + G HAE++ALL A +Q
Sbjct: 14 MARAIELAKQGRFTTTPNPNVGCVLVKDNIIVGEGFHQVAGQGHAEVNALLMAGSQAK-- 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC E L +G+ KVI A+ DPNP V+GKG+A L AGI V
Sbjct: 72 -GATAYVTLEPCSHFGRTPPCAEGLKAAGVVKVIAAMVDPNPQVAGKGLAILADAGIVVA 130
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N GF RM++G+P+V K+A+SLD KT+L N S+WIT +R D +
Sbjct: 131 SGLLEPQARLLNRGFLKRMEQGMPFVTCKMAASLDGKTALKNGQSKWITGTAARQDVQLQ 190
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH---------QPYRIVIDSYLRIDPFFRVLK 230
RA+SCAILTG TVL D+ +LNVR + QP RI+IDS R+ P +
Sbjct: 191 RAQSCAILTGADTVLIDDAKLNVRVDELPEPLPTQLPVRQPVRIIIDSQNRLTPDLALFS 250
Query: 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQ-AVIIELGKRKINELHIEAGY 289
I T L + + H IV+P KVDL+ A+ +++ N + +EAG
Sbjct: 251 IASDIIIITTALDKSVQWPHYVTH--IVVPAKDHKVDLKAALRQLAQQQQFNHIWLEAGA 308
Query: 290 QLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L + +DE ++Y++P L+G + ++ S+ + + L +E IG DIRI
Sbjct: 309 TLAGKMAEYNLIDEYIVYLAPKLLGNDGKSLLNFAELSSMQEAVDLTINECTLIGDDIRI 368
Query: 349 LA 350
A
Sbjct: 369 TA 370
>gi|262404604|ref|ZP_06081159.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio sp. RC586]
gi|262349636|gb|EEY98774.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio sp. RC586]
Length = 367
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 132/353 (37%), Positives = 211/353 (59%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E L+K+G+ KVI A+ DPNP V+G+GV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLVKAGVAKVICAMQDPNPQVAGRGVQMLRDAGIEVEVGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKDVQCFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLAVRWHDLPKSVQAQYAETDLRQPLRVILDRQHQLHPELALYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ + + GK+DL+ ++ +L ++ +N++ +EAG QL +LI +
Sbjct: 252 TPSPVLRVASENAD---LCISTENGKLDLRELLAQLAQQHNVNQVWVEAGSQLAQSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|294648973|ref|ZP_06726421.1| riboflavin biosynthesis protein RibD [Acinetobacter haemolyticus
ATCC 19194]
gi|292825108|gb|EFF83863.1| riboflavin biosynthesis protein RibD [Acinetobacter haemolyticus
ATCC 19194]
Length = 366
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 139/355 (39%), Positives = 218/355 (61%), Gaps = 20/355 (5%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+ A+L S+ PNP VGCVIVK+ +I+ G+ G HAE+ AL A G +
Sbjct: 16 MQRAIDLARLGQYSTKPNPNVGCVIVKDGQILGEGFHPKAGQPHAEVFALRQA---GENA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
++TVY+TLEPC+++G TPPC EAL+K+ +KKV+IA +DPNPLV+GKGV L AGI V+
Sbjct: 73 KDATVYVTLEPCAHYGRTPPCAEALVKAQVKKVVIACSDPNPLVAGKGVKILQDAGIEVE 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ + A +N+GF M G+P+VR+KIASSLD +T++ + S+WIT +R D W
Sbjct: 133 TGVCTENAKGLNLGFLKAMSTGLPYVRLKIASSLDGRTAMASGESKWITGTLARQDVQHW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK-----TSHQPYRIVIDSYLRIDPFFRVLKGGGS 234
RA S A++TGI TVL D+ LNVR ++ T QP RI++D ++ ++LK +
Sbjct: 193 RAISGAVITGIQTVLADDCELNVRVLEGVDLYTVVQPKRIILDRQGQLPLTAKILKNPET 252
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNT 293
+ P +++ L DLG VI L L ++ L ++ +I ++ +EAG L+T
Sbjct: 253 VMVMT---PFRQE-LADLG--VI----QLSLQPLNQLLQTLSQQYQIYDVLVEAGATLST 302
Query: 294 ALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
A + +G VDE++ Y++P L+G++ + ++ + + ++ ++G DIR+
Sbjct: 303 AFLQQGLVDEMISYVAPTLLGQSARAMFNAEFSKMAEQRRFELVDVTQLGQDIRL 357
>gi|384086120|ref|ZP_09997295.1| riboflavin biosynthesis protein RibD [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 366
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 138/352 (39%), Positives = 210/352 (59%), Gaps = 8/352 (2%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL A + S+ PNPRVG V+V+E ++ G G HAE+ AL A A
Sbjct: 10 MEMALDLANRGLYSTHPNPRVGAVVVQEGIVVGRGAHLFAGEAHAEVLALAEAGAA---S 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G T PC +AL+ +G+K+V++A+ DPNPLVSG+G+A+L +AGI V+
Sbjct: 67 RAATVYVTLEPCSHQGRTAPCADALMAAGVKRVVVAVQDPNPLVSGQGIARLRAAGIEVE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G + E+ +N GFF RM+ G PW+R+K A SLD +L N SQW+T +R D
Sbjct: 127 LGCCEAESRALNPGFFMRMEGGRPWIRLKQAVSLDAGVALGNGQSQWLTGTLARADVQKE 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IF 237
RA + AIL GIGTVL DNPRL R I P ++++D++LR + G+ IF
Sbjct: 187 RASASAILVGIGTVLADNPRLAPRLDIPLRRCPVKVILDTHLRTPADAALFASPGAVWIF 246
Query: 238 TATDLPMKRK-ILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
D P K L+ G ++ +P + ++D AV+ L +++++E+ +EAG L + L
Sbjct: 247 HGPDQPEAAKNALQAAGADLFAVPLDGERLDCPAVMRILAEKQMSEVLVEAGPGLASTLF 306
Query: 297 LEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
G VDE LLY++P+L+G+ A + P L + + + ++ +G D++
Sbjct: 307 AAGLVDEWLLYMAPMLLGQGALPAMQVGPFQQLTEAPRWRSLRVESLGNDLK 358
>gi|295112158|emb|CBL28908.1| riboflavin biosynthesis protein RibD [Synergistetes bacterium SGP1]
Length = 371
Score = 243 bits (620), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/340 (36%), Positives = 194/340 (57%), Gaps = 2/340 (0%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+SPNP VGCV+V++ RI+ G+ + G +HAE+ AL +A +G + VY+TLEPC
Sbjct: 28 RTSPNPMVGCVLVRDGRILGEGWHRRCGEDHAEVAALKDAERRGETARGAEVYVTLEPCC 87
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+FG TPPC + L++ G+ +V+ DPNP V+ G+A L AG+ V +++EA +N
Sbjct: 88 HFGRTPPCAQRLVREGVSRVVAGTADPNPRVNSGGLAVLREAGVEVSAPCLEEEARRVNK 147
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF G PWV +K AS LD + +L + S+WIT E+R +H RA AIL G+ T
Sbjct: 148 GFIRVQTLGRPWVTLKAASGLDGRMALTDGDSRWITGPEARQWAHGMRASHDAILVGVST 207
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDL 252
VLKD+P L VR + P R+++DS+LR R L+ GG I T + + + L+
Sbjct: 208 VLKDDPELTVRHTE-GKSPLRVILDSHLRTPTSARALR-GGCLILTISQEAERARALQAA 265
Query: 253 GHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPIL 312
G V+ LP+ G+VDL+ + L + + L +E G ++ TAL+ D L L+++P +
Sbjct: 266 GARVVPLPSREGRVDLEVALAFLAREGVLTLMVEGGPRVLTALMEGHLADSLSLFVAPRV 325
Query: 313 IGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+GE M S+ + LK + +G ++ + RF
Sbjct: 326 LGEGIGMGEGFSPASVAESFNLKDVTSRPVGDNLLVEGRF 365
>gi|251790670|ref|YP_003005391.1| riboflavin biosynthesis protein RibD [Dickeya zeae Ech1591]
gi|247539291|gb|ACT07912.1| riboflavin biosynthesis protein RibD [Dickeya zeae Ech1591]
Length = 370
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 140/364 (38%), Positives = 220/364 (60%), Gaps = 24/364 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ ++PNP VGCVIV++ I+ GY + G HAE+ AL A G
Sbjct: 10 MARALELARRGRFTTAPNPNVGCVIVRDGEIVGEGYHQKAGEPHAEVHALRMA---GDKA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 67 HGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPQVAGRGLHRLQQAGIAVH 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++ ++A +IN GF RM+ G P+V++K+ +SLD +T++ + SQWITS +SR D +
Sbjct: 127 HGVLMEQAEKINRGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQSRQDVQRF 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + QP R+++DS R+ P
Sbjct: 187 RAQSSAILSSSATVLADDPSLTVRWSELDEDTQRLYPESAMRQPVRVIVDSQSRVTPQHC 246
Query: 228 VLKGGGSCIFTATDLPMKRKILEDL--GHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
++ G T L R+ + G E + +P + G +DL +++ LGKR+IN + +
Sbjct: 247 LVNQPGQ-----TWLARARQDDQSWPDGVEQLEMPLHGGGIDLVGLMMTLGKRQINTVWV 301
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344
EAG +L AL+ G VDEL++Y++P L+G+ A ++ LP L + ++ +IGP
Sbjct: 302 EAGPRLAGALLQAGVVDELIVYLAPKLLGDAARSLCVLPGLEQLSQAPMFDMTDVCQIGP 361
Query: 345 DIRI 348
D+R+
Sbjct: 362 DVRL 365
>gi|118602777|ref|YP_903992.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Candidatus Ruthia magnifica str. Cm (Calyptogena
magnifica)]
gi|118567716|gb|ABL02521.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Candidatus
Ruthia magnifica str. Cm (Calyptogena magnifica)]
Length = 349
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 151/362 (41%), Positives = 211/362 (58%), Gaps = 36/362 (9%)
Query: 1 MTLALQ---QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDAL--LNAAAQ 55
M +AL+ Q K + S NP VGCVIVK +II+ GY ++ G H EI+AL +N AQ
Sbjct: 13 MVIALKLASQGKYGVKS--NPMVGCVIVKHTKIIAKGYHQTFGKAHGEINALQQINHQAQ 70
Query: 56 GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAG 115
G +T Y+TLEPCS+ G TP C +A+I SG+KKVIIA+ DPNPLV+GKGV L +AG
Sbjct: 71 G-----ATFYVTLEPCSHQGKTPSCAQAIIHSGVKKVIIAMLDPNPLVNGKGVVMLENAG 125
Query: 116 ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRND 175
I VK GL++ +A +N GF M+ P+VR KIA SLD KTS+ + S+WITS+ +R D
Sbjct: 126 IEVKIGLLENDALTLNQGFIKYMKTNKPFVRCKIAMSLDGKTSMSSGESKWITSEVTRLD 185
Query: 176 SHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC 235
RA AI+TG GT++ DNP + VR + P R+VIDS +I
Sbjct: 186 VQKLRANHQAIMTGSGTIINDNPLMTVRLDNINLTPLRVVIDSKNQI-------TNTSLN 238
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNL-----GKVDLQAVIIELGKRKINELHIEAGYQ 290
IF A D P +I+ P N GK+DL V+ +LG + IN + +EAG +
Sbjct: 239 IFNA-DAP-----------TLILNPTNTKTLSSGKLDLGNVLTQLGNQGINNVLLEAGPK 286
Query: 291 LNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
L ++I +DE ++Y++PIL+G N ++ KIKL +++ + DI+I A
Sbjct: 287 LIGSMIKSNLIDEFIIYMAPILMGSNANSMLNLVIKNMAHKIKLNIVDVRMVSNDIKITA 346
Query: 351 RF 352
Sbjct: 347 TL 348
>gi|56965745|ref|YP_177479.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16]
gi|56911991|dbj|BAD66518.1| riboflavin biosynthesis protein RibD [Bacillus clausii KSM-K16]
Length = 367
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 150/363 (41%), Positives = 210/363 (57%), Gaps = 23/363 (6%)
Query: 1 MTLALQQAK-LSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK + + PNP VGCV+VKE RII G G HAEI+AL A G +
Sbjct: 6 MRLALDNAKAMKGQTDPNPLVGCVLVKEGRIIGVGAHLKAGEAHAEINALRMA---GSEA 62
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST Y+TLEPCS+ G T PC L+++G+K+VIIA DPNPLVSG GV L G+ V+
Sbjct: 63 KGSTAYVTLEPCSHTGRTGPCAVELVEAGVKEVIIATLDPNPLVSGNGVRILEEGGVHVQ 122
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++KEA ++N F + +P+V +K A SLD K + + S+WITS E+R D H
Sbjct: 123 TGILEKEAVQLNDVFNYSIVNRMPYVTLKAAVSLDGKIAAKSGDSKWITSSEARQDVHRL 182
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLR--IDPFFRVLKGGGSCIF 237
R+ + AI+ G+ TVLKDNP L R I P R+++DS+LR +D + IF
Sbjct: 183 RSENQAIIVGVDTVLKDNPSLTAR-IANGRNPIRVIVDSHLRTPVDAIVTTDGLAPTWIF 241
Query: 238 TATD---LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
TA + LP K++ LE G +V + KVDL+ ++ L K I+ +EAG LN A
Sbjct: 242 TAAEPRHLPEKQERLEKAGVR-LVQTSGTTKVDLKEMMAYLYKESISSALLEAGGTLNAA 300
Query: 295 LILEGCVDELLLYISPILIGEAYNMFTLPPHY----SLDK---KIKLKFHEIQKIGPDIR 347
+ V +L++Y++P LIG A L P + +DK + L F E +IGPD++
Sbjct: 301 FLEAQLVQKLIVYVAPKLIGGA-----LAPTFLEGSGIDKMADALPLAFSEATQIGPDLK 355
Query: 348 ILA 350
+ A
Sbjct: 356 LTA 358
>gi|145638234|ref|ZP_01793844.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittII]
gi|145272563|gb|EDK12470.1| formamidopyrimidine-DNA glycosylase [Haemophilus influenzae PittII]
gi|309751389|gb|ADO81373.1| Riboflavin biosynthesis protein RibD [Haemophilus influenzae R2866]
Length = 372
Score = 243 bits (619), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 136/354 (38%), Positives = 211/354 (59%), Gaps = 21/354 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENAKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAANLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ TVL D+P LNVR ++KT + QP R+++DS RI P ++ S
Sbjct: 197 STSATVLTDDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFL-THSP 255
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ ++ P D ++I+ NL L+ ++ ELG+R+IN L +EAG L +L
Sbjct: 256 VWLVSNEPRDLTGFPDFCEQIILPKENL----LKELMQELGRRQINTLWVEAGANLAGSL 311
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
I VDEL++Y++P L+G+ A + LP L + +++++IG DI++
Sbjct: 312 IDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNKLEQIGDDIKL 365
>gi|260581778|ref|ZP_05849575.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae NT127]
gi|260095371|gb|EEW79262.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae NT127]
Length = 372
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 211/354 (59%), Gaps = 21/354 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENSKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLSDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ TVL D+P LNVR ++KT + QP R+++DS RI P ++ S
Sbjct: 197 STSATVLADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFL-TYSP 255
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ ++ P D ++I+ NL L+ ++ ELG+R+IN L +EAG L +L
Sbjct: 256 VWLVSNEPRDLTGFPDFCEQIILPKENL----LKELMQELGRRQINTLWVEAGANLAGSL 311
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
I VDEL++Y++P L+G+ A + LP L + +E+++IG DI++
Sbjct: 312 IDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>gi|118580019|ref|YP_901269.1| riboflavin biosynthesis protein RibD [Pelobacter propionicus DSM
2379]
gi|118502729|gb|ABK99211.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Pelobacter
propionicus DSM 2379]
Length = 367
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 128/356 (35%), Positives = 216/356 (60%), Gaps = 9/356 (2%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+ I +SPNP VGCVIVK+ I+ G+ + G +HAEI AL A G
Sbjct: 8 MKRALALARRGIGKTSPNPAVGCVIVKDGVIVGTGWHRKAGTSHAEIHALEMA---GESA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ V++TLEPC + G TPPC++ALI++G+++V+ ++DPNP VSG G+A+L +AGI V
Sbjct: 65 RGADVFVTLEPCCHTGKTPPCSQALIRAGVRRVVAGMSDPNPRVSGGGLAELETAGIQVV 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++KE ++N F ++ G+P V K A +LD K + + +S+WI+ +ESR H
Sbjct: 125 CGVLEKECRDLNRPFIKQVTTGMPHVTYKCAMTLDGKIATVSGASRWISCQESRTLVHRM 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC---I 236
RAR AI+ G+ T++ D+P+L VR ++ P R+V+D+ LR RVL G + I
Sbjct: 185 RARMDAIMVGVDTIIADDPQLTVRHVR-GRNPLRVVVDTRLRTPESVRVLGDGNAVNTLI 243
Query: 237 FTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
TA P ++ G ++V G+V ++ ++ +LGKR + + +E G +L +++
Sbjct: 244 ATAETNPRVHLRYQNQGATILVCDQENGRVSMKDLMFKLGKRGVQSILLEGGGRLAGSML 303
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+G +DE + +++P ++G + ++ F+L S+++ +L ++ + G DI + AR
Sbjct: 304 EQGLIDEFVFFLAPKILGSDGFSPFSLVGRTSMEQASRLNIIKVSRSGIDIVVHAR 359
>gi|262170762|ref|ZP_06038440.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio mimicus MB-451]
gi|261891838|gb|EEY37824.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio mimicus MB-451]
Length = 367
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/353 (37%), Positives = 210/353 (59%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G + +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTHGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+G+GV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGRGVQMLRDAGIEVEVGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLAVRWHDLPQSGQAQYAETDLRQPLRVILDRQHQLHPELALYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ ++ + N GK+DL ++ +L ++ +N++ +EAG QL +LI +
Sbjct: 252 TPSPVLRVASENA--DLCISAEN-GKLDLHELLAQLAQQHNVNQVWVEAGSQLAQSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|157146970|ref|YP_001454289.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Citrobacter koseri ATCC BAA-895]
gi|157084175|gb|ABV13853.1| hypothetical protein CKO_02747 [Citrobacter koseri ATCC BAA-895]
Length = 367
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 215/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHHRAGEPHAEVHALRMA---GDKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM E ++N GF RM+ G P+V++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSETEQLNKGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR S +T + QP RIV+DS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWPELDASTQTLYPQENLRQPIRIVLDSQNRVTPEHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T +I + + V P + G +DL +++ LGK++IN + +EA
Sbjct: 244 IVQQPGDTWFARTQ--DDSRIWPETVRSLRV-PEHNGHLDLVVLMMLLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A + LP L + KF+EI+ +GPD+
Sbjct: 301 GPVLAGALLQAGVVDELIVYVAPKLLGSDARGLCVLPGLEKLSEAPHFKFNEIRHVGPDV 360
>gi|407070637|ref|ZP_11101475.1| riboflavin biosynthesis protein RibD [Vibrio cyclitrophicus ZF14]
Length = 359
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 137/366 (37%), Positives = 219/366 (59%), Gaps = 29/366 (7%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M+ A+Q AK I ++PNP VGCVIV+ + +I+ G+ G HAE+ A+ A G
Sbjct: 2 MSRAIQLAKRGIYTTAPNPNVGCVIVQADGQIVGEGFHAKAGEPHAEVHAMRMA---GDK 58
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+T Y+TLEPCS++G TPPC E LIK+ + KVI A+ DPNP V+G+G+ L AGI V
Sbjct: 59 AKGATAYVTLEPCSHYGRTPPCAEGLIKAQVSKVICAMQDPNPKVAGRGIKILRDAGIEV 118
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ GL++++A ++N F RMQ G+P+V++K+A+SLD +T+L N SQWITS E+R D
Sbjct: 119 EIGLLEQDALDLNPAFIKRMQTGMPFVQLKMAASLDGQTALENGQSQWITSSEARRDVQN 178
Query: 179 WRARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFF 226
+RA+S A+L+ TV++DN LNVR S K ++ QP R+++D ++ P
Sbjct: 179 YRAKSGAVLSTSQTVIEDNASLNVRWAELPSSTKINYVEDELRQPIRVILDRQNQLHPEL 238
Query: 227 RVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
++ + S + A + ++ V + G++DL ++ +L I+ + +E
Sbjct: 239 KLFQTPTSVLRVA-----------ETSADIEVGTTDAGQLDLHDLMRQLPASHIDHIWVE 287
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L +LI VDEL+LY++P L+G + + S+ I L+ +++++G D
Sbjct: 288 AGATLAKSLIEAQLVDELILYLAPKLMGSDGRGLMGALGLTSMSDVIDLEIKDVRQVGVD 347
Query: 346 IRILAR 351
IRI+A+
Sbjct: 348 IRIVAK 353
>gi|335039510|ref|ZP_08532670.1| riboflavin biosynthesis protein RibD [Caldalkalibacillus thermarum
TA2.A1]
gi|334180578|gb|EGL83183.1| riboflavin biosynthesis protein RibD [Caldalkalibacillus thermarum
TA2.A1]
Length = 365
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/358 (40%), Positives = 218/358 (60%), Gaps = 15/358 (4%)
Query: 1 MTLALQQAK-LSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAA--AQGY 57
M LALQ A+ S +SPNP VG VIVK+ I+ G G HAE+ AL A AQG
Sbjct: 10 MKLALQLAEATSGQTSPNPVVGAVIVKDFEIVGLGAHLKAGEAHAEVHALAMAKEKAQG- 68
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
+T+Y+TLEPCS++G TPPC +A+I++GIK+V+IA DPNPLV G+GV +L +AG+
Sbjct: 69 ----ATMYVTLEPCSHYGRTPPCADAVIEAGIKRVVIAACDPNPLVRGRGVEKLKAAGLE 124
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V+ GL +KEA +N F + P+V +K A++LD K + SQWIT +E+R D H
Sbjct: 125 VEVGLFKKEAERLNEIFNYYIVHRRPFVTLKTATTLDGKIATVTGESQWITGEEARADVH 184
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVR-SIKTSHQPYRIVIDSYLRI--DPFFRVLKGGGS 234
+ R R AIL GI TVL+DNPRL R + ++ P R+++DS LRI D + +
Sbjct: 185 LLRHRHDAILVGINTVLRDNPRLTTRIAGQSGRHPVRVILDSKLRIPLDAQVTHTEQAPT 244
Query: 235 CIFTATDLPMKR-KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNT 293
IFT P +R K L + G +V+ + + +VD++ V+ LG++ I + +E G ++N
Sbjct: 245 WIFTTDQAPAERVKALTEKGVKVVKISSET-RVDVEQVLAYLGEQGIASVLVEGGGEVNA 303
Query: 294 ALILEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
+ + G V++++ Y++P LIG EA F SL + + LK ++ +G D++++
Sbjct: 304 SFLQGGFVNKVVAYLAPKLIGGNEAPGAFRGQGVLSLAQSLHLKDVSVETLGQDLKVV 361
>gi|32491211|ref|NP_871465.1| hypothetical protein WGLp462 [Wigglesworthia glossinidia
endosymbiont of Glossina brevipalpis]
gi|25166418|dbj|BAC24608.1| ribD [Wigglesworthia glossinidia endosymbiont of Glossina
brevipalpis]
Length = 384
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 141/352 (40%), Positives = 206/352 (58%), Gaps = 20/352 (5%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
+ PNP VGCVIV K I+ GY K PG +HAEI AL A G STVY+TLEPCS+
Sbjct: 24 THPNPNVGCVIVLNKSIVGEGYHKIPGSDHAEICALKLA---GKYAKGSTVYVTLEPCSH 80
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
G TP C +ALI + +K+VI + DPNPLVSGKG + L +AGI VK +M +++ ++N+G
Sbjct: 81 HGKTPSCAQALINAKVKEVIASAVDPNPLVSGKGFSMLKNAGIKVKYNIMSEKSIKLNLG 140
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
FF RM+ GIPW+ +K+ SS+D +T+ S+WITS ESR D + RA+S AIL+ TV
Sbjct: 141 FFKRMKYGIPWITLKLGSSIDGRTATKKGISKWITSVESRKDVQVLRAKSGAILSSAKTV 200
Query: 194 LKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT- 240
++DN +L VR S+K QP RI+ID+ +I ++K G +
Sbjct: 201 IEDNSKLTVRWNDLPNNVKLKYSLKEERQPIRIIIDNSNKILNSHDIIKHKGIIFLVRSL 260
Query: 241 --DLPMKRKILEDLGHEVIVLPNNLG-KVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
+L R + + + + DL ++I LGK +IN + IE+G L+ + +L
Sbjct: 261 NDNLTWPRHVKQIICSTCKKFSKTKTIRTDLFKLMILLGKNEINSVLIESGANLSGSFLL 320
Query: 298 EGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
G +DE++LY SP ++GE +F L + L+ K ++ +IG D+R
Sbjct: 321 SGLLDEIILYQSPKILGEKGLPLFFLHKSFKLNLSPKFVISDVCRIGEDVRF 372
>gi|407790855|ref|ZP_11137946.1| riboflavin biosynthesis protein RibD [Gallaecimonas xiamenensis
3-C-1]
gi|407202402|gb|EKE72394.1| riboflavin biosynthesis protein RibD [Gallaecimonas xiamenensis
3-C-1]
Length = 356
Score = 242 bits (618), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 134/348 (38%), Positives = 202/348 (58%), Gaps = 27/348 (7%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNP VGCVIVK ++ G+ + G HAE+ AL A G +T Y+TLEPC+
Sbjct: 20 TTEPNPAVGCVIVKNGELVGEGWHQQAGTAHAEVHALNMA---GERARGATAYVTLEPCA 76
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC EAL+K+G+ KVI A+ DPNP V+GKG+ L AGI+ + GL++ +A +N
Sbjct: 77 HYGRTPPCAEALVKAGVAKVIAAMVDPNPQVAGKGLKILEDAGIATQHGLLEADARALNP 136
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF +M+ G+P VRMK+A+SLD +T+L N S+WIT ++R D RA S AI+TG GT
Sbjct: 137 GFIKKMETGLPLVRMKLAASLDGRTALKNGQSKWITGPDARADVQRLRAMSGAIITGAGT 196
Query: 193 VLKDNPRLNVRS--------IKTSHQPYRIVIDSYLRI---DPFFRVLKGGGSCIFTATD 241
VL D P LNVR + QP R+V+D R+ + FF+V T
Sbjct: 197 VLVDEPSLNVRQSQFPDPYPLPELRQPLRVVLDRRQRLGSDNGFFQVP--------TPAW 248
Query: 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCV 301
+ D V L LG+ D +++ K +N + +EAG +L+ A + EG V
Sbjct: 249 VVSHHNDHRDFPDHVERL--RLGEKDFLKTLLK--KLPVNSVLVEAGAELSGAFLAEGLV 304
Query: 302 DELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
DEL+LY++P L+G+ + + LP + + + +++++G D+R+
Sbjct: 305 DELVLYLAPTLMGDVSRGLLALPVFSDMAQAPRFTIKDVRRVGDDLRL 352
>gi|452750413|ref|ZP_21950162.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri NF13]
gi|452005670|gb|EMD97953.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri NF13]
Length = 367
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 142/366 (38%), Positives = 210/366 (57%), Gaps = 25/366 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + S+ PNPRVGCVIV + ++ G+ G HAE+ AL A G
Sbjct: 8 MARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQA---GERA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EALIK+G+ +V+ A+ DPNP V+G+G+ L SAGI +
Sbjct: 65 RGATAYVTLEPCSHYGRTPPCAEALIKAGVGRVVAAMQDPNPQVTGRGLELLRSAGIEIA 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R +
Sbjct: 125 SGVLEAEARELNNGFIKRMESGLPFVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RARS +LTG TVL D RL VR ++ P R+++D LR+ PF
Sbjct: 185 RARSSVVLTGADTVLMDAARLTVRGGELGLDAETTALALQRPPLRVLVDGRLRVPLDAPF 244
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + TA + GHE +VL +VDL A++ EL R +NE+ +
Sbjct: 245 F---QAGEALVVTA--VAGCEDAYRRAGHEALVLGQE--RVDLAALLRELAARGVNEVLV 297
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE ++++ +G + P + + +LK +I+ +G D
Sbjct: 298 EAGPRLVGAFASLGLVDEYQIFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDD 357
Query: 346 IRILAR 351
+I+AR
Sbjct: 358 WKIVAR 363
>gi|343505430|ref|ZP_08743002.1| riboflavin-specific deaminase [Vibrio ichthyoenteri ATCC 700023]
gi|342807728|gb|EGU42908.1| riboflavin-specific deaminase [Vibrio ichthyoenteri ATCC 700023]
Length = 368
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 217/366 (59%), Gaps = 30/366 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A++ A+ I ++PNP VGCVI ++ +I+ G+ G HAE+ AL A G
Sbjct: 12 MSRAIKLAQGGIYTTAPNPNVGCVITRDGQIVGEGFHFRAGEPHAEVHALRMA---GELA 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LI + + KVI A+ DPNP VSG+G+ L AGI V+
Sbjct: 69 EGATAYVTLEPCSHYGRTPPCAEGLINAKVAKVICAMQDPNPQVSGRGIRMLREAGIEVQ 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N F RMQ G+P+V++K+A+SLD +T+L N SQWITS ++R D +
Sbjct: 129 VGLLEADAQALNPAFIKRMQTGMPFVQLKMAASLDGQTALANGHSQWITSAQARQDVQVL 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TV++DN LNVR S++ + QP R+++D ++ +
Sbjct: 189 RAQSGAILSTSQTVIEDNASLNVRWDDLPKSLQAHYPAEHLRQPVRVILDRQSKLSADLK 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIE 286
+ + GG + A + ++ + D +VDL+A L K+ IN + +E
Sbjct: 249 LFQTGGERLVVAPNGDIECPLNVD------------NQVDLRATFEMLAKQHNINHIWVE 296
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L ++LI + VDE++LY++P L+G + +F + + I L E++++G D
Sbjct: 297 AGATLASSLIQQQLVDEVVLYLAPKLMGSDGRGLFGALGLQEMSQVIDLDITELKQVGRD 356
Query: 346 IRILAR 351
IRILA+
Sbjct: 357 IRILAK 362
>gi|270263547|ref|ZP_06191816.1| hypothetical protein SOD_e01710 [Serratia odorifera 4Rx13]
gi|270042431|gb|EFA15526.1| hypothetical protein SOD_e01710 [Serratia odorifera 4Rx13]
Length = 369
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 144/362 (39%), Positives = 222/362 (61%), Gaps = 20/362 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A + A+L ++PNP VGCVIV++ I+ GY G HAE+ AL A A+
Sbjct: 8 MARAFELARLGRFTTAPNPNVGCVIVRDGEIVGEGYHLRAGEPHAEVHALRMAGAR---A 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AGI V+
Sbjct: 65 RGATAYVTLEPCSHHGRTPPCADALVAAGVARVVAAMQDPNPEVAGRGLYKLQQAGIDVR 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM +A +N GF RM+ G P+V++K+ +SLD +T++ + SQWITS ++R D
Sbjct: 125 HGLMLSDAEAVNPGFLKRMRTGFPYVQLKLGASLDGRTAMASGESQWITSPQARQDVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTS----------HQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TVL D+P L VR + T+ QP RI++DS R+ P R
Sbjct: 185 RAQSAAILSTSATVLADDPSLTVRWDELDTATQSLYPRENLRQPLRIILDSQNRVTPQHR 244
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
V++ G+ + A P + +++ E + P + G VDL ++++L KR++N + +EA
Sbjct: 245 VVQQPGTT-WLARLQPDDQNWPQEV--EQLTFPAHGGGVDLVVMMMQLAKRQVNSIWVEA 301
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L+ AL+ G VDEL+LYI+P L+G+ + LP +L + F E+++IGPD+
Sbjct: 302 GAALSGALLQAGLVDELILYIAPKLMGDNGRGLCRLPGLENLADAPEFVFSEVRQIGPDL 361
Query: 347 RI 348
R+
Sbjct: 362 RL 363
>gi|78485744|ref|YP_391669.1| riboflavin biosynthesis protein RibD [Thiomicrospira crunogena
XCL-2]
gi|78364030|gb|ABB41995.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase /
diaminohydroxyphosphoribosylaminopyrimidine deaminase
[Thiomicrospira crunogena XCL-2]
Length = 391
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 212/354 (59%), Gaps = 20/354 (5%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++ PNP VGCVI +++ II+ G+ + G HAE AL NA V +TVY+TLEPCS
Sbjct: 30 STKPNPAVGCVITQQENIIAEGWHQKAGEPHAERVALANATES---VKGATVYVTLEPCS 86
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC +AL+ SG+ +V+IA+ DPNPLV+G G+ +L AGI V G++ +EA +N
Sbjct: 87 HHGKTPPCADALVDSGVARVVIAMQDPNPLVAGNGIKRLEQAGIVVDSGILSEEAAALNK 146
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF S M P+VR+K+A+SLD +T++ N SQWIT E+R+ H+ RA+ AI+TG+GT
Sbjct: 147 GFVSVMTSNRPFVRLKVANSLDGRTAMANGESQWITGPEARHQVHLMRAQHGAIVTGVGT 206
Query: 193 VLKDNPRLNVR---SIKT-------SHQPYRIVIDSYLR--IDPFFRVLKGGGSCIFTAT 240
VL D+P LNVR S+ T + P R+V+D+ L +D L G + +
Sbjct: 207 VLADDPSLNVRLSESVLTELGLTSENCHPLRVVLDANLSTPLDAKMLSLPGRTLLMTSKE 266
Query: 241 DLPMKRKILEDL---GHEVIVLPNNLGKVDLQAVIIELGKRK-INELHIEAGYQLNTALI 296
+ ++E G EVI + ++ K+D+ +V+ L + + I ++ +EAG + A I
Sbjct: 267 TVDQNLDLIERFYQKGAEVIAVESDGDKLDIPSVLSYLVESENIYDVMVEAGAIVAGAFI 326
Query: 297 LEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
V+EL ++ +PIL+GE A MF LP + K + +Q +G D+ ++
Sbjct: 327 QADVVNELHVFTAPILMGEMAKPMFVLPGLTEMADKKVFAYQSVQALGEDLYLV 380
>gi|383816728|ref|ZP_09972120.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Serratia sp. M24T3]
gi|383294440|gb|EIC82782.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Serratia sp. M24T3]
Length = 380
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 133/363 (36%), Positives = 213/363 (58%), Gaps = 28/363 (7%)
Query: 9 KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITL 68
K ++PNP VGCVIV++ I+ GY GG HAE+ AL A Q +T Y+TL
Sbjct: 17 KGRFTTTPNPNVGCVIVRDGEIVGEGYHIKAGGPHAEVHALRMAGEQ---ARGATAYVTL 73
Query: 69 EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAY 128
EPCS+ G TPPC +AL+ +GI +V+ A+ DPNP V+G+G+ +L AG+ V GLM +A
Sbjct: 74 EPCSHHGRTPPCADALLNAGIIRVVAAMQDPNPEVAGRGLYRLRQAGVEVSNGLMLSQAE 133
Query: 129 EINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILT 188
+N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS +R D +RA S AIL+
Sbjct: 134 AVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSAAARQDVQRFRAASSAILS 193
Query: 189 GIGTVLKDNPRLNVR-----------------SIKTS-----HQPYRIVIDSYLRIDPFF 226
TVL D+P L VR +I ++ QP R+++DS R+ P
Sbjct: 194 SSATVLADDPSLTVRWSELDQDTQDQYNQALSAIGSTAPDDLRQPLRVIVDSKNRVTPQH 253
Query: 227 RVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
+++ G + L + + +++V +VDL ++++L K+++N + +E
Sbjct: 254 KLVHQPGETLLAR--LQADGQSWPENLRQLVVPATADNRVDLVILMMQLAKQQVNSVWVE 311
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG +L AL+ G VDEL++Y++P L+G+ + LP SL +F +++++GPD
Sbjct: 312 AGSELAGALLQAGLVDELIIYMAPKLLGDNGRALCVLPGLESLTDAPAFEFSDVRQVGPD 371
Query: 346 IRI 348
+R+
Sbjct: 372 LRL 374
>gi|33519699|ref|NP_878531.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Candidatus Blochmannia floridanus]
gi|33517362|emb|CAD83747.1| bifunctional pyrimidine deaminase/reductase in pathway of
riboflavin synthesis [Candidatus Blochmannia floridanus]
Length = 378
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 147/354 (41%), Positives = 209/354 (59%), Gaps = 26/354 (7%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
+ PNP VGCVIVKE ++I GY G +HAEI AL A G +TVY+TLEPCS+
Sbjct: 28 TMPNPNVGCVIVKENKVIGEGYHIRAGEDHAEIHALRIA---GDSARGATVYVTLEPCSH 84
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
+G TPPCT ALI SGIK V+I++ DP+P + G+GV L +GI V+ LM EA IN G
Sbjct: 85 YGRTPPCTTALINSGIKCVVISMLDPDPEIKGRGVRLLQESGILVRHSLMLSEAEHINKG 144
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F R++ G+PW+++K+A+SLD +T++ S+WITS +SR D +RA S IL+ T+
Sbjct: 145 FIKRIRTGMPWIKVKLAASLDGRTAMKTGESKWITSVQSRQDVQCFRAESDVILSTATTI 204
Query: 194 LKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFT--- 238
L DNP LNVR +I+ + QP R++IDS R+ P R ++ G I
Sbjct: 205 LIDNPHLNVRWSFFPKNIQLKYCREHIRQPLRVIIDSANRVLPTHRFIQNSGKVILVRLK 264
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLG--KVDLQAVIIELGK-RKINELHIEAGYQLNTAL 295
+L + + L E+ N +G +++L+A++ LG RKIN + +EAG L+ +L
Sbjct: 265 KDNLNWPESVEQLLAPEI----NLVGSYQINLEALMKYLGYVRKINNVWVEAGPTLSGSL 320
Query: 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIK-LKFHEIQKIGPDIRI 348
+ G VDEL+LY S +G P+ K +K K I+ IGPDIR+
Sbjct: 321 LDIGLVDELILYQSIKFLGSNAKPLCFLPNIDNLKDVKTFKLLNIKNIGPDIRL 374
>gi|148828121|ref|YP_001292874.1| hypothetical protein CGSHiGG_08285 [Haemophilus influenzae PittGG]
gi|148719363|gb|ABR00491.1| hypothetical protein CGSHiGG_08285 [Haemophilus influenzae PittGG]
Length = 372
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 210/354 (59%), Gaps = 21/354 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENAKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPC+++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ TV+ D+P LNVR ++KT + QP R+++DS RI P ++ S
Sbjct: 197 STSTTVIADDPSLNVRWDEFPETLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFL-THSP 255
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ + P D ++I+ NL L+ ++ ELGKR+IN L +EAG L +L
Sbjct: 256 VWLVSSEPRDLTGFPDFCEQIILPKENL----LKELMRELGKRQINTLWVEAGANLAGSL 311
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
I VDEL++YI+P L+G+ A + LP L + +E+++IG DI++
Sbjct: 312 IDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>gi|344342451|ref|ZP_08773322.1| riboflavin biosynthesis protein RibD [Marichromatium purpuratum
984]
gi|343805787|gb|EGV23682.1| riboflavin biosynthesis protein RibD [Marichromatium purpuratum
984]
Length = 365
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 145/352 (41%), Positives = 222/352 (63%), Gaps = 17/352 (4%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+++PNPRVGCVIV++ ++ G+ + GG HAE AL A A+ +TVY+TLEPCS
Sbjct: 14 STAPNPRVGCVIVRDGVLVGEGWHRRAGGPHAERHALAAAGAR---ARGATVYVTLEPCS 70
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G TPPC +AL+++G+ +V+ A+ DPNP V+G+G+A+L +AGI+ G+ A +N
Sbjct: 71 HHGRTPPCADALVEAGVGRVVCAMVDPNPRVAGRGIARLEAAGIATLVGVQAAAAEALNP 130
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF RM+ G P VR K+A+SLD +T++ + S+WITS+++R D RA S AI+TG+ T
Sbjct: 131 GFVQRMRAGRPLVRCKLAASLDGRTAMADGESRWITSEQARADVQRLRAGSGAIITGVET 190
Query: 193 VLKDNPRLNVRSIKTS----------HQPYRIVIDSYLRIDPFFRVLKGGGSCIF--TAT 240
+L D+P LNVR + QP R+V+DS R P R+L G+ + A
Sbjct: 191 LLADDPSLNVRLAPEALPGLMPGDPVLQPLRVVLDSRWRTPPTARMLGLPGTTLVVGAAP 250
Query: 241 DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
DL +R ++ +G E +V G+VDL A++ EL +R+INE IE+G L A + G
Sbjct: 251 DLERQRALVA-VGAETLVCGGADGRVDLAALLAELARREINEALIESGPTLAGAALAAGL 309
Query: 301 VDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
VDEL++Y++P L+G+ A + LP + ++ L F + ++IGPD+R+L R
Sbjct: 310 VDELVVYLAPHLMGDCARGLVRLPGIEQMADRLALVFVDARRIGPDLRLLLR 361
>gi|197335179|ref|YP_002155463.1| riboflavin biosynthesis protein RibD [Vibrio fischeri MJ11]
gi|197316669|gb|ACH66116.1| riboflavin biosynthesis protein RibD [Vibrio fischeri MJ11]
Length = 363
Score = 241 bits (616), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 216/371 (58%), Gaps = 34/371 (9%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+ AK I ++PNP VGCV+VK+ +I+ G G HAE+ AL A G +
Sbjct: 2 MQKAILLAKQGIYTTAPNPNVGCVLVKDGKIVGEGAHLKAGEPHAEVHALRQA---GKEA 58
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+G+KKVI A+ DPNP V+G+G+A L AGI
Sbjct: 59 QGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLNEAGIETA 118
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N F +RM+ G P+V++K+A+SLD KT+L N SQWITSKE+R D +
Sbjct: 119 SGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEARQDVQRY 178
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TV+ DN LNVR SI+ S+ QP R ++D + +
Sbjct: 179 RAQSGAILSTAKTVIDDNASLNVRWSDLPPSIQESYQQAAIRQPMRFILDRQHALTSDLK 238
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLG------KVDLQAVIIELGKR-KI 280
+ + G + I H ++ N++ +++L+ V+ ++ + +
Sbjct: 239 LFQASGEVV----------TISSQNTHPIVTSENHIQCCVDDEQLNLKEVVNKISRDFNV 288
Query: 281 NELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEI 339
N + +EAG L ++I E VDEL++Y++P L+G + ++ L ++ + I L +I
Sbjct: 289 NHIWVEAGATLAASMIKENLVDELIIYLAPKLMGADGRSIINLIGLETMSETIDLDIKDI 348
Query: 340 QKIGPDIRILA 350
+ +G DIRI A
Sbjct: 349 RMVGKDIRITA 359
>gi|402698230|ref|ZP_10846209.1| riboflavin biosynthesis protein RibD [Pseudomonas fragi A22]
Length = 363
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 135/365 (36%), Positives = 208/365 (56%), Gaps = 25/365 (6%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A+ + + PNPRVGCVIV++ +I+ G+ G HAE+ AL A G
Sbjct: 1 MARAIELARNGLYTTHPNPRVGCVIVRDGQIVGEGWHVRTGEPHAEVHALR---AAGELA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G+TPPC + L +G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 58 RGATAYVTLEPCSHHGHTPPCADGLRHAGVARVVAAMQDPNPEVAGRGLKRLADAGIEVC 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ N SQWIT +R+
Sbjct: 118 SGVLESEARALNPGFLKRMEHGLPFVRVKLAMSLDGRTAMANGESQWITGPAARSAVQRL 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 178 RAQASVVLTGADTVLADGARLTVRGPELGLSPELTALALSRPPLRVLIDGRLRVPLDAPF 237
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F K G + + AT +P + G E +V+ G+VDL+ +++ L R +NE+ +
Sbjct: 238 F---KAGPALV--ATCVPPAEQY--RTGPECLVIHGANGQVDLRKLLVALAARGVNEVLV 290
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A +G VDE ++I+ +G P + + LK E++ +G D
Sbjct: 291 EAGPRLAGAFAEQGLVDEYQIFIAAKFLGSTARPLLELPLTHMSEAPLLKIIEMRAVGDD 350
Query: 346 IRILA 350
R+ A
Sbjct: 351 WRVTA 355
>gi|386346215|ref|YP_006044464.1| riboflavin biosynthesis protein RibD [Spirochaeta thermophila DSM
6578]
gi|339411182|gb|AEJ60747.1| riboflavin biosynthesis protein RibD [Spirochaeta thermophila DSM
6578]
Length = 362
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 123/334 (36%), Positives = 201/334 (60%), Gaps = 5/334 (1%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+SPNP VG V+VK+ R++ G+ + G HAE+ AL A G + + +Y+TLEPC
Sbjct: 22 RTSPNPMVGAVVVKDGRVVGEGFHERAGLPHAEVTALSEA---GGEARGAEMYVTLEPCC 78
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPCT+A++K+G+++V++A DPNP V+GKG++ L AG+ V+ G++ +EA +N
Sbjct: 79 HWGRTPPCTDAILKAGVRRVVVACRDPNPQVAGKGLSILAEAGVEVEVGVLSREARWLNR 138
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM+RG PWV K+A+SLD + +L + S+WIT + SR + H RA S ++TGIGT
Sbjct: 139 GFISRMERGRPWVVAKVAASLDGRIALPDGRSKWITGEASRREVHRLRAGSDVLVTGIGT 198
Query: 193 VLKDNPRLNVR-SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILED 251
VL D+P VR + P +V+D+ R+ RV++ G + R +E
Sbjct: 199 VLADDPAFTVRVPVGEGRDPGVVVLDTRGRLPVGARVVREGTVVMVGPGVDEGWRGEMER 258
Query: 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPI 311
G V+ + +VD++AV LG+ +N + +EAG + A + G VDEL+++++P
Sbjct: 259 RGVRVVEMGVRGERVDVEAVCAWLGQEGVNVVMVEAGAGVTGAFLEAGVVDELVVFVAPR 318
Query: 312 LIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
++GE L ++ + + E++ +G D
Sbjct: 319 VLGEGRGWVEGRVLEGLGER-EWEVREVRGVGED 351
>gi|261211387|ref|ZP_05925675.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio sp. RC341]
gi|260839342|gb|EEX65968.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio sp. RC341]
Length = 367
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 131/353 (37%), Positives = 210/353 (59%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A G +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQA---GELTRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LI++G+ KVI A+ DPNP V+G+GV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIQAGVAKVICAMQDPNPQVAGRGVQMLRDAGIEVEVGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPYVQLKMAASLDGQTALANGKSQWITSSAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + + + A
Sbjct: 201 TVLADNASLAVRWHDLPPSVQAQYAEADLRQPLRVILDRQHQLYPELALYQTPSPVLRVA 260
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
++ R E+ GK+DL+ ++ +L ++ +N++ +EAG QL +LI +
Sbjct: 261 SENADLRISAEN------------GKLDLRELLTQLAQQHNVNQVWVEAGSQLAQSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 QLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|90406961|ref|ZP_01215152.1| Putative pyrimidine deaminase/pyrimidine reductase [Psychromonas
sp. CNPT3]
gi|90312003|gb|EAS40097.1| Putative pyrimidine deaminase/pyrimidine reductase [Psychromonas
sp. CNPT3]
Length = 381
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/371 (37%), Positives = 209/371 (56%), Gaps = 27/371 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ AK S+PNP VGCVIV + ++ G+ G HAE+ AL A G
Sbjct: 14 MSRALELAKKGRFTSAPNPNVGCVIVLDDIVVGTGFHFKAGQGHAEVYAL---AMAGSKA 70
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ST Y+TLEPCS+FG TPPC ALIK+G+K+V +A+ DPNP V+G+G+ L AGI V
Sbjct: 71 QSSTCYVTLEPCSHFGRTPPCALALIKAGVKRVCVAMRDPNPQVAGQGIKLLQDAGIEVS 130
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A ++N+GF +RM V +K+ +SLD KT+L N SQWIT +SR D +
Sbjct: 131 VGLLEPQAKQLNLGFINRMLHKRARVTLKLGASLDGKTALKNGKSQWITGSQSRCDVQHF 190
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--------------SIKTSHQPYRIVIDSYLRIDPF 225
RA+ AIL+ TVL D+P LNVR S + QP RI++DS ++
Sbjct: 191 RAQQSAILSSASTVLADDPSLNVRFEELQQSMYFKGEISAEQLRQPLRIILDSRNKLTGQ 250
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLG-----HEVIVLPNNLGKVDLQAVIIELGKRKI 280
++ G I A L R L D V+ + G +DL++++ L + ++
Sbjct: 251 EKIFSLPGDIILVALQL---RHDLSDFKGVAQVQSVVCPADEAGNIDLRSLLKLLNRYEL 307
Query: 281 NELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEI 339
N++ +E G L A VD+ +LY +P L+G +A ++ L ++D ++L E+
Sbjct: 308 NDIWLEVGATLAGAFFKAQLVDQFILYQAPKLMGAQARSLVNLDDFSTMDDVLQLTLQEV 367
Query: 340 QKIGPDIRILA 350
IG DIRI++
Sbjct: 368 TVIGNDIRIIS 378
>gi|381196744|ref|ZP_09904085.1| pyrimidine deaminase [Acinetobacter lwoffii WJ10621]
Length = 367
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 204/342 (59%), Gaps = 18/342 (5%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++ PNP VGCVIVK+ ++ GY G HAE+ A+ A G +T Y+TLEPC+
Sbjct: 29 STKPNPNVGCVIVKDGLLLGTGYHPKAGQPHAEVFAMREA---GEQTQGATAYVTLEPCA 85
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC + L+++G+ +V+IA DPNPLV+GKGV L AGI V G+ Q EA+++N
Sbjct: 86 HYGRTPPCAKGLVEAGVARVVIACPDPNPLVAGKGVQILKEAGIEVDVGICQAEAHQLNA 145
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF M G+P+VR+K+ASSLD +T++ + S+WIT ++R D +RA S ++TGI T
Sbjct: 146 GFLKAMATGMPYVRLKVASSLDGRTAMASGESKWITGSDARLDVQHFRAISGVVITGIET 205
Query: 193 VLKDNPRLNVRSIK------TSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKR 246
+L D+P+LNVR ++ T QP R+V D R+ ++L+ + + R
Sbjct: 206 ILADDPQLNVRQLQGVTDLTTVVQPKRLVFDRQGRLPLTAQILQQPDTVMVMGP----YR 261
Query: 247 KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLL 306
+ L DLG VL + +D Q + + +I ++ +EAG L+TA + E VDE++
Sbjct: 262 QALADLG----VLQFAVQPLD-QLLKQLVQSHQIYDVMVEAGATLSTAFLQEKLVDEMIS 316
Query: 307 YISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
Y++P L+G++ + ++++ K ++ + G D+R+
Sbjct: 317 YVAPTLLGQSARAMFNAEFSQMAEQLRFKLMDVTQFGDDVRL 358
>gi|27363797|ref|NP_759325.1| riboflavin biosynthesis protein RibD [Vibrio vulnificus CMCP6]
gi|27359914|gb|AAO08852.1| riboflavin biosynthesis protein RibD [Vibrio vulnificus CMCP6]
Length = 368
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 133/354 (37%), Positives = 203/354 (57%), Gaps = 33/354 (9%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNP VGCV++++ I+ G+ G HAE+ A+ A G +T Y+TLEPCS
Sbjct: 25 TTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRMA---GDKAKGATAYVTLEPCS 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC E LIK+G+ +V+ A+ DPNP V+G+G A L AGI V GL+Q EA +N
Sbjct: 82 HYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREAGIEVSVGLLQAEAEALNP 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
F RM+ G+P+V++K+A+SLD +T+L N SQWITS ++R D +RA+S AIL+ T
Sbjct: 142 AFIKRMKMGMPFVQLKMAASLDGQTALANGKSQWITSPQARRDVQRFRAQSGAILSTSKT 201
Query: 193 VLKDNPRLNVR------SIKTS------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT 240
VL DN LNVR S++ + QP R+V+D + P ++ + G +
Sbjct: 202 VLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQAELSPELKLYQTEGERLIVGP 261
Query: 241 --DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRK-INELHIEAGYQLNTALIL 297
DLP + G++DL + +L + + IN L +EAG L LI
Sbjct: 262 KGDLPAPL--------------DEHGQIDLPQLFAQLSQTQLINHLWVEAGATLAAGLIK 307
Query: 298 EGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDEL++Y++P L+G + + ++ + I L +++ +GPDIRI+A
Sbjct: 308 HQLVDELIVYLAPKLMGSDGRGLMGALGLQAMSQVIDLDIKDVRMVGPDIRIIA 361
>gi|319775121|ref|YP_004137609.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3047]
gi|329122965|ref|ZP_08251536.1| riboflavin biosynthesis protein RibD [Haemophilus aegyptius ATCC
11116]
gi|317449712|emb|CBY85919.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3047]
gi|327471896|gb|EGF17336.1| riboflavin biosynthesis protein RibD [Haemophilus aegyptius ATCC
11116]
Length = 372
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 210/354 (59%), Gaps = 21/354 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENAKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ TV+ D+P LN+R ++KT + QP R+++DS RI P ++ S
Sbjct: 197 STSTTVIADDPSLNIRWDEFPENLKTEYKKEGLRQPVRVILDSQHRIQPTHKLFL-THSP 255
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ + P D ++I+ NL L+ ++ ELGKR+IN L +EAG L +L
Sbjct: 256 VWLVSSEPRDLTGFPDFCEQIILPKENL----LKELMRELGKRQINTLWVEAGANLAGSL 311
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
I VDEL++YI+P L+G+ A + LP L + +E+++IG DI++
Sbjct: 312 IDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>gi|255020757|ref|ZP_05292816.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Acidithiobacillus caldus ATCC 51756]
gi|254969819|gb|EET27322.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Acidithiobacillus caldus ATCC 51756]
Length = 369
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 203/355 (57%), Gaps = 10/355 (2%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+ + S+ PNPRVG V+V++ +I+ G G HAE+ AL A G
Sbjct: 1 MAEALTLARRGLYSTHPNPRVGAVVVRDGQIVGRGAHLRAGDAHAEVFALAQA---GERA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPC + G TPPCT+A++ +G+ +V+IAI DPNP V G G+A L G+ V+
Sbjct: 58 RGATLYVTLEPCCHHGRTPPCTDAILTAGVARVVIAIADPNPRVRGGGIALLQQQGLQVE 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G + +EA +NIGF RM+ G PW+R+K A SLD +L + SQW+T +R D
Sbjct: 118 LGCLAEEATALNIGFVRRMRSGRPWIRLKQAQSLDGCVALASGESQWLTGSAARADVQRE 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS-CIF 237
RA + AI+ G+GTVL DNPRL R P++I++DS+LR + G IF
Sbjct: 178 RAAASAIVVGVGTVLADNPRLAPRVDFPLCRFPHKIILDSHLRTPADAALFDTPGEIWIF 237
Query: 238 TATDLPMKRKI-LEDLGHEVIVLPNNLGKV--DLQAVIIELGKRKINELHIEAGYQLNTA 294
D +R+I L G + LP V DL A+ L +R+ NE+ +EAG +L T+
Sbjct: 238 HGQDADPERRIRLIQRGAHLQGLPMGPKGVGLDLAALWTALAQRECNEVLVEAGPELATS 297
Query: 295 LILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L+ G VDE LLY++P ++GE A L P+ LD + + I D+++
Sbjct: 298 LLRGGWVDEWLLYLAPKILGEGAQPAARLGPYAQLDAVPSWRLWRAETIAGDVKL 352
>gi|226951731|ref|ZP_03822195.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. ATCC 27244]
gi|226837521|gb|EEH69904.1| riboflavin biosynthesis protein RibD [Acinetobacter sp. ATCC 27244]
Length = 366
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/355 (38%), Positives = 218/355 (61%), Gaps = 20/355 (5%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+ A+L S+ PNP VGCVIVK+ +I+ G+ G HAE+ AL A G +
Sbjct: 16 MQRAIDLARLGQYSTKPNPNVGCVIVKDGKILGEGFHPKAGQPHAEVFALRQA---GENA 72
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
++T Y+TLEPC+++G TPPC EAL+K+ +KKV+IA +DPNPLV+GKGV L+ AGI V+
Sbjct: 73 KDATAYVTLEPCAHYGRTPPCAEALVKAQVKKVVIACSDPNPLVAGKGVKILLDAGIEVE 132
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ + A +N+GF M G+P+VR+K+ASSLD +T++ + S+WIT +R D W
Sbjct: 133 TGVCTEIAKGLNLGFLKAMSAGLPYVRLKVASSLDGRTAMASGESKWITGAIARQDVQHW 192
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK-----TSHQPYRIVIDSYLRIDPFFRVLKGGGS 234
RA S A++TGI TVL D+ LNVR ++ T QP RI++D ++ ++L+ +
Sbjct: 193 RAISGAVITGIQTVLADDCELNVRELEGVNLSTVVQPKRIILDRQGQLPLTAKILQNPET 252
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNT 293
+ P +++ L DLG VI L L ++ L ++ +I ++ +EAG L+T
Sbjct: 253 VMVMT---PFRQE-LADLG--VI----QLSLQPLNQLLQTLSQQYQIYDVLVEAGATLST 302
Query: 294 ALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
A + +G VDE++ Y++P L+G++ + ++ + + ++ ++G DIR+
Sbjct: 303 AFLQQGLVDEMISYVAPTLLGQSARAMFNAEFSKMAEQRRFELVDVTQLGQDIRL 357
>gi|16272881|ref|NP_439104.1| riboflavin biosynthesis protein [Haemophilus influenzae Rd KW20]
gi|260580033|ref|ZP_05847863.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae RdAW]
gi|1172932|sp|P44326.1|RIBD_HAEIN RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|1573964|gb|AAC22598.1| riboflavin biosynthesis protein (ribD) [Haemophilus influenzae Rd
KW20]
gi|260093317|gb|EEW77250.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae RdAW]
Length = 372
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 210/354 (59%), Gaps = 21/354 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENAKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPC+++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESTVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ TV+ D+P LNVR ++KT + QP R+++DS RI P ++ S
Sbjct: 197 STSTTVIADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQHRIQPTHKLFL-THSP 255
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ + P D ++I NL L+ ++ ELGKR+IN L +EAG L+ +L
Sbjct: 256 VWLVSSEPRDLTGFPDFCEQIIFPKENL----LKELMRELGKRQINTLWVEAGANLSGSL 311
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
I VDEL++YI+P L+G+ A + LP L + +E+++IG DI++
Sbjct: 312 IDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>gi|218668008|ref|YP_002424804.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
ferrooxidans ATCC 23270]
gi|218520221|gb|ACK80807.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
ferrooxidans ATCC 23270]
Length = 366
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 211/356 (59%), Gaps = 8/356 (2%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL A+ + S+ PNP VG V+VK+ R+I G G HAE+ AL A A
Sbjct: 10 MSEALVLAEQGLYSAHPNPCVGAVLVKDGRVIGRGAHLQAGEPHAEVLALKEAGAA---A 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC +ALI +GI +V+IA+ DPNPLV+G+GV +L +AG+ +
Sbjct: 67 RGATAYVTLEPCSHYGRTPPCADALIAAGIARVVIAMRDPNPLVAGRGVERLRAAGVVAE 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+G ++ A +N GF RM+ G PW+R+K A SLD + +L N SQW+T + +R D
Sbjct: 127 EGCLEAAAEALNPGFLRRMRHGRPWLRLKQAMSLDGRVALANGRSQWLTGEAARADVQQE 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IF 237
RAR+ AIL GIGTVL DNPRL R P ++++DS+LR P + G+ IF
Sbjct: 187 RARASAILVGIGTVLADNPRLAPRLEAPLRRYPVKVIMDSHLRTPPDAALFGTPGAVWIF 246
Query: 238 TATDLPM-KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
D P+ R L G E++ + +D Q V+ L +R+INE+ +EAG + +L
Sbjct: 247 HGQDAPVAARAALCAAGAELLFCRGTVQGLDWQEVMGMLAERQINEVLVEAGPGVAASLF 306
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G +DE LLY++P+L+G +A + P+ L + + + ++G DI+ R
Sbjct: 307 AAGLIDEWLLYVAPLLLGLDARPVLATGPYSDLAEVPRWSVIQSSRLGNDIKWTLR 362
>gi|417839538|ref|ZP_12485714.1| Riboflavin biosynthesis protein RibD [Haemophilus haemolyticus
M19107]
gi|341952285|gb|EGT78816.1| Riboflavin biosynthesis protein RibD [Haemophilus haemolyticus
M19107]
Length = 372
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 136/348 (39%), Positives = 207/348 (59%), Gaps = 21/348 (6%)
Query: 14 SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSY 73
++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+TLEPCS+
Sbjct: 26 TTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENAKGATAYVTLEPCSH 82
Query: 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIG 133
+G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A +IN G
Sbjct: 83 YGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQAEKINKG 142
Query: 134 FFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193
F RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L+ T+
Sbjct: 143 FLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSDVQKMRAKSSALLSTSATI 202
Query: 194 LKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTATD 241
L DNP LNVR ++KT + QP R+++DS RI P ++ S ++ +
Sbjct: 203 LADNPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFL-THSPVWLVSS 261
Query: 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCV 301
D ++I+ NL L+ ++ ELGKR+IN L +EAG L +LI V
Sbjct: 262 ETRDLTGFPDFCEQIILPKENL----LKELMRELGKRQINTLWVEAGANLAGSLIDAKLV 317
Query: 302 DELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
DEL++YI+P L+G+ A + LP L + +E+++IG DI++
Sbjct: 318 DELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>gi|296133286|ref|YP_003640533.1| riboflavin biosynthesis protein RibD [Thermincola potens JR]
gi|296031864|gb|ADG82632.1| riboflavin biosynthesis protein RibD [Thermincola potens JR]
Length = 385
Score = 241 bits (615), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 148/356 (41%), Positives = 218/356 (61%), Gaps = 11/356 (3%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ AK N+SPNP VG VIVK+ R+I GY G HAE+ AL A G
Sbjct: 9 MRMALELAAKARGNTSPNPMVGAVIVKDGRVIGKGYHMKAGTPHAEVHALREA---GELS 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPCS++G TPPC++A+I +G+ +V++A+ DPNPLVSG+G+ Q+ AGI V+
Sbjct: 66 RGATMYVTLEPCSHYGRTPPCSKAVIAAGVARVVVAMEDPNPLVSGQGIQQMREAGIQVE 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM+KEA E+N F ++ P+V MK A +LD K + S+WIT +E+R H+W
Sbjct: 126 VGLMEKEARELNEVFIKYIKTRRPFVVMKSAMTLDGKIATATGHSRWITGEEARRLVHLW 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-SIKTSHQPYRIVIDSYLRIDPFFRVLKG--GGSCI 236
R+ AIL GIGTVL DNP L R + + P RI++DS R+ VLK I
Sbjct: 186 RSWYDAILVGIGTVLTDNPLLTCRLEDRQAQNPVRIILDSLGRLPVDVNVLKTIEQAPVI 245
Query: 237 FTATD-LPMKRK-ILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
+T+ +P +RK +LE LG EV+VLP G+ DL A++ ELG+R+I L +E G +N +
Sbjct: 246 VVSTEKIPRERKAVLEKLGAEVLVLPEREGRPDLAALLDELGRREITSLFVEGGATVNAS 305
Query: 295 LILEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+ D+ + +++P ++G +A +D+ + +K +Q IGPD+ I
Sbjct: 306 FLKNRLADKTVWFVAPKIVGGPQAPGPVGDMGIQFMDECLNIKNMSVQDIGPDLLI 361
>gi|345430516|ref|YP_004823637.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Haemophilus parainfluenzae T3T1]
gi|301156580|emb|CBW16051.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Haemophilus parainfluenzae T3T1]
Length = 376
Score = 241 bits (614), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 135/362 (37%), Positives = 207/362 (57%), Gaps = 22/362 (6%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL+ AK ++PNP VGCV+VK I+ G+ G HAE AL +A G
Sbjct: 13 MQLALELAAKGQYTTTPNPSVGCVLVKNGEIVGKGFHFKTGQPHAERVALADA---GEKA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC LI++G+ +V+ A+ DPNP V+GKG+ L AGI
Sbjct: 70 KGATAYVTLEPCSHYGRTPPCALGLIEAGVSRVVAAMADPNPQVAGKGLKMLADAGIPSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
L+ ++A +N GF RM+ G P+V++K+A SLD +T++ + S+WIT + +R D
Sbjct: 130 VNLLNEQAEALNKGFLKRMRTGKPYVQLKLAMSLDGRTAMASGESKWITGEAARADVQKM 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ A+L+ TVL D+P LNVR + T QP RI++DS R+ P +
Sbjct: 190 RAKATALLSTSATVLADDPSLNVRWNQFPDDLKAEYAEDTVRQPIRIILDSKNRVQPSHQ 249
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+ S ++ +P + D E I+LP N D ++ ELGKR++N + +EA
Sbjct: 250 LFH-THSPVWLVGSIPRDMSVFPDFC-EQILLPEN---YDFDLLMTELGKRQVNSVWVEA 304
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKL-KFHEIQKIGPDI 346
G L +LI + VDEL++Y++P L+G+ PH + L + E ++IG D+
Sbjct: 305 GANLAGSLIEQHAVDELIIYVAPKLLGDNARGLCQLPHLEKLADVPLWQLQECERIGDDL 364
Query: 347 RI 348
++
Sbjct: 365 KL 366
>gi|2493562|sp|P70814.1|RIBD_BACAM RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|1592688|emb|CAA65189.1| deaminase [Bacillus amyloliquefaciens]
Length = 371
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 135/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDA--LLNAAAQGYDVYNSTVYITLEP 70
+ PNP VG V+VK+++I+ G G HAE+ A + + A+G D+Y +TLEP
Sbjct: 19 QTQPNPLVGAVVVKKRQIVGMGAHLQYGEAHAEVHAINMAGSLAKGADLY-----VTLEP 73
Query: 71 CSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEI 130
CS++G TPPC E ++KSGIK+V IA+ DPNPLV+GKG+ L AGI VK GL++++A E+
Sbjct: 74 CSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEEAGIEVKTGLLRQQAEEL 133
Query: 131 NIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGI 190
N F M+ G+P+V +K A+SLD KT+ S+WITS+ +R D+ +R IL G
Sbjct: 134 NKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQQYRKSHQRILVGA 193
Query: 191 GTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG--SCIFTATDLPMKRKI 248
GTV DNP L R QP R+++D+ L + VL G + IFTA +++K
Sbjct: 194 GTVKADNPSLTCRLPDAVKQPVRVILDTKLTVPETANVLTDGAAPTWIFTAAGSDVRKKD 253
Query: 249 -LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLY 307
L LG +V L + ++ + V+ L + I +++E G ++ + + GC DEL Y
Sbjct: 254 RLTALGIKVFTLETD--RIHIPEVLSILAENGIMSVYVEGGASVHGSFVKAGCFDELHFY 311
Query: 308 ISPILIGE--AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
+PILIG A ++ + S+ L+F +I +IGPDI++ A
Sbjct: 312 FAPILIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTA 356
>gi|429212647|ref|ZP_19203812.1| riboflavin-specific deaminase/reductase [Pseudomonas sp. M1]
gi|428157129|gb|EKX03677.1| riboflavin-specific deaminase/reductase [Pseudomonas sp. M1]
Length = 366
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 139/363 (38%), Positives = 210/363 (57%), Gaps = 19/363 (5%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + S+ PNPRVGCV+VK ++ G+ G HAE+ AL A G +
Sbjct: 9 MARALELARKGLYSTHPNPRVGCVLVKGGVVVGEGWHVRAGEPHAEVHALRQA---GDNA 65
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +AL+K+G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 66 RGATAYVTLEPCSHFGRTPPCADALVKAGVARVVAAMQDPNPQVAGQGLRRLAEAGIEVA 125
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA EIN GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R
Sbjct: 126 CGVLEAEAREINAGFIKRMETGLPFVRVKLAMSLDGRTAMASGESQWITGPAARCAVQRL 185
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS +L+G TVL D RL VR ++ + QP R+++D LR+
Sbjct: 186 RARSSVVLSGADTVLLDAARLTVRPDELGLDAEQTALAAARQPLRVLVDGRLRVPTDAAF 245
Query: 229 LKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288
+ G + + + + R G E++VLP G VDL ++ ELG R NE+ +EAG
Sbjct: 246 YQAGPALVASCAE----RDGFAAEGRELLVLPGADGHVDLAKLLAELGARGANEVLVEAG 301
Query: 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+L A G VDE ++++P L+G + P + + +LK +I+ +G D +
Sbjct: 302 PRLAGAFARLGLVDEYQIFVAPKLLGSSARPLLELPLEKMAEARELKIADIRAVGDDWLV 361
Query: 349 LAR 351
AR
Sbjct: 362 TAR 364
>gi|87121732|ref|ZP_01077619.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Marinomonas sp. MED121]
gi|86162983|gb|EAQ64261.1| Riboflavin biosynthesis protein RibD:Riboflavin-specific deaminase,
C-terminal [Marinomonas sp. MED121]
Length = 383
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 136/361 (37%), Positives = 207/361 (57%), Gaps = 16/361 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q A+ + + PNPRVGCV+V++ +++ GY K G HAE++A+ NA D
Sbjct: 13 MAQAIQLARKGLYTTHPNPRVGCVLVRDNSLVAEGYHKVAGEGHAEVNAIANANG---DT 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
T Y+TLEPCS+ G T PC +ALIK+ + +++ + DPNP V+G+G+A L AGI V
Sbjct: 70 QGCTAYVTLEPCSHQGKTGPCAKALIKANVSRLVYGMQDPNPDVAGRGLAMLKEAGIEVI 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+M+ EA +N GF RM G+P+VR+K+A SLD +T++ + SQWIT ++R D
Sbjct: 130 GPVMETEALALNPGFIKRMTEGLPYVRLKLAMSLDGRTAMESGESQWITGPDARLDVQKL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH--------QPYRIVIDSYLRIDPFFRVLKG 231
RA+S AI+TGIG+V+ D+P + VR +H QP RI++D+ L I P ++L
Sbjct: 190 RAQSDAIVTGIGSVMADDPSMTVRIDSDNHPVKSKSVRQPKRIIMDTALSIPPESKILYP 249
Query: 232 GGSC-IFTATDLPMKR--KILEDLGHEVI-VLPNNLGKVDLQAVIIELGKRKINELHIEA 287
IF +L K L D G V G +DL + L + INE+ +E
Sbjct: 250 CNQVQIFCLEELAEAEHHKALTDKGVNVTYTQAAEEGGIDLVVSMETLADQGINEVLVET 309
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
G L A + EG VDE++LY++P L+G P S+ + + + + ++G DI+
Sbjct: 310 GAVLAGAFLQEGLVDEVVLYMAPKLLGSNARPLMQLPLDSMAQAVDFEMVNLSQLGKDIK 369
Query: 348 I 348
+
Sbjct: 370 L 370
>gi|447918540|ref|YP_007399108.1| riboflavin biosynthesis protein RibD [Pseudomonas poae RE*1-1-14]
gi|445202403|gb|AGE27612.1| riboflavin biosynthesis protein RibD [Pseudomonas poae RE*1-1-14]
Length = 375
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 209/369 (56%), Gaps = 33/369 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ +I+ G+ + G HAE +AL A G
Sbjct: 13 MARALELARKGLYTTHPNPRVGCVIVRDGQIVGEGWHERTGEPHAEPNALR---AAGSKA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +AL+ +G+ +V+ + DPNP V+G+G+ +L AGI V+
Sbjct: 70 RGATVYVTLEPCSHHGRTPPCADALVTAGVARVVAGMQDPNPEVAGRGMQRLAQAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R
Sbjct: 130 SGVLEAEARALNPGFLKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 190 RAQASVVLTGADTVLADGARLTVRAAELGLDPETTALAMSRPPLRVLIDGRLRVPLNAPF 249
Query: 226 FRVLKGGG----SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
F K G +C+ P G E +V+P G+VDL+A ++ L R +N
Sbjct: 250 F---KAGPALVITCVTAQNQFPR--------GPECLVVPGVEGQVDLRAALVALAARGVN 298
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQK 341
E+ +EAG L A +G VDE +++++ +G A P L +LK +++
Sbjct: 299 EVLVEAGPSLAGAFAQQGLVDEYVIFVAGKFLGSAARPLLDWPLEKLADAPQLKITDLRA 358
Query: 342 IGPDIRILA 350
+G D R+ A
Sbjct: 359 VGDDWRVTA 367
>gi|198282613|ref|YP_002218934.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
ferrooxidans ATCC 53993]
gi|198247134|gb|ACH82727.1| riboflavin biosynthesis protein RibD [Acidithiobacillus
ferrooxidans ATCC 53993]
Length = 357
Score = 241 bits (614), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 142/356 (39%), Positives = 211/356 (59%), Gaps = 8/356 (2%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL A+ + S+ PNP VG V+VK+ R+I G G HAE+ AL A A
Sbjct: 1 MSEALVLAEQGLYSAHPNPCVGAVLVKDGRVIGRGAHLQAGEPHAEVLALKEAGAA---A 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC +ALI +GI +V+IA+ DPNPLV+G+GV +L +AG+ +
Sbjct: 58 RGATAYVTLEPCSHYGRTPPCADALIAAGIARVVIAMRDPNPLVAGRGVERLRAAGVVAE 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+G ++ A +N GF RM+ G PW+R+K A SLD + +L N SQW+T + +R D
Sbjct: 118 EGCLEAAAEALNPGFLRRMRHGRPWLRLKQAMSLDGRVALANGRSQWLTGEAARADVQQE 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSC-IF 237
RAR+ AIL GIGTVL DNPRL R P ++++DS+LR P + G+ IF
Sbjct: 178 RARASAILVGIGTVLADNPRLAPRLEAPLRRYPVKVIMDSHLRTPPDAALFGTPGAVWIF 237
Query: 238 TATDLPM-KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
D P+ R L G E++ + +D Q V+ L +R+INE+ +EAG + +L
Sbjct: 238 HGQDAPVAARAALCAAGAELLFCRGTVQGLDWQEVMGMLAERQINEVLVEAGPGVAASLF 297
Query: 297 LEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
G +DE LLY++P+L+G +A + P+ L + + + ++G DI+ R
Sbjct: 298 AAGLIDEWLLYVAPLLLGLDARPVLATGPYSDLAEVPRWSVIQSSRLGNDIKWTLR 353
>gi|350562967|ref|ZP_08931790.1| riboflavin biosynthesis protein RibD [Thioalkalimicrobium
aerophilum AL3]
gi|349779833|gb|EGZ34174.1| riboflavin biosynthesis protein RibD [Thioalkalimicrobium
aerophilum AL3]
Length = 386
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 139/366 (37%), Positives = 211/366 (57%), Gaps = 23/366 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+L +++ PNP VGCVI+ +++ G+ + G HAE+ AL AA D
Sbjct: 15 MNRALDLAQLGRVSTRPNPAVGCVIINRGQVVGEGWHQQAGQPHAEVLALRQAAEHAKD- 73
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC ALI +G+K+V+IA+ DPNPLVSG+G+A L AGI V
Sbjct: 74 --ATAYVTLEPCSHFGKTPPCCNALIAAGVKRVVIAMTDPNPLVSGRGIAALGEAGIEVT 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
Q + A +N GF RMQ G P V +K+A+SLD K +L N SQWIT++ +R+ H+
Sbjct: 132 QNVAMARAKALNAGFVMRMQTGRPLVSLKLATSLDAKVALANGESQWITNELARHQGHLL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RA+ CAI+TGI +V+ D+P+L VR S + +P+++V+DS+LR+ ++
Sbjct: 192 RAQHCAIVTGIDSVIVDDPQLTVRVSDDDLNKQGWSSQRRVEPFKVVLDSHLRLPLTAKL 251
Query: 229 LKGGGSCIFTATDLPMKRKI-----LEDLGHEVIVLPNNL-GKVDLQAVIIELGKR-KIN 281
I T + ++ L DLG +V V+ + +V+L V+ L + N
Sbjct: 252 CAQPDKLIVYTTQTALTKQASKYAQLLDLGVKVNVVAQTIHARVELIEVLNHLAAHYQCN 311
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQ 340
+ IEAG L A+ + VDE+ + +PI++G +A + L P L++ K Q
Sbjct: 312 NVMIEAGGTLAGAMFNQQLVDEVHWFSAPIVLGPDAQSALNLLPLQHLEQATHFKLQAQQ 371
Query: 341 KIGPDI 346
+G +
Sbjct: 372 LLGDNF 377
>gi|312883784|ref|ZP_07743503.1| riboflavin-specific deaminase [Vibrio caribbenthicus ATCC BAA-2122]
gi|309368533|gb|EFP96066.1| riboflavin-specific deaminase [Vibrio caribbenthicus ATCC BAA-2122]
Length = 365
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 145/366 (39%), Positives = 210/366 (57%), Gaps = 32/366 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A+L ++PNPRVGCVIVK+ ++ G+ G HAE+ AL A +
Sbjct: 10 MSRALKLAELGKYTTAPNPRVGCVIVKDGLVVGEGFHYRAGEPHAEVHALQAAKERAI-- 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS++G TPPC EALIK+ + +V+ A+ DPN LVSG+G+ L SAGI V
Sbjct: 68 -GATVYVTLEPCSHYGRTPPCAEALIKAKVGRVVCAMQDPNTLVSGRGIQMLRSAGIEVD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A ++N F M+ G+P+V++K+A SLD +T+L N SQWITS ++R D +
Sbjct: 127 VGLLEQDALDLNRAFIKTMRSGLPFVQLKLAGSLDGQTALKNGQSQWITSSQARQDVQAF 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SI------KTSHQPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TV++DN L VR SI K QP R+++D + R
Sbjct: 187 RAQSGAILSTSKTVIEDNASLTVRWSELPASIQAIYPEKALRQPPRVILDRKQTLTSDLR 246
Query: 228 VLKGGGSCIFTATDLPMKRKILE-DLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHI 285
+ I A P E D ++ +LP + L K IN L +
Sbjct: 247 FFQSQSESIIIA---PSNEHFDELDWSKQLELLP----------IFKTLAKTYSINHLWV 293
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHY-SLDKKIKLKFHEIQKIGP 344
EAG L+ +LI EG VDEL+LYI+P L+G SL++ I L E++ +G
Sbjct: 294 EAGATLSRSLIREGLVDELILYIAPKLMGNDGRGLLGDLGLTSLEQAIDLDIKEVRMVGK 353
Query: 345 DIRILA 350
D+RI+A
Sbjct: 354 DLRIIA 359
>gi|68249531|ref|YP_248643.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
86-028NP]
gi|68057730|gb|AAX87983.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
86-028NP]
Length = 372
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 210/356 (58%), Gaps = 25/356 (7%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENAKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ TVL D+P LNVR ++KT + QP R+++DS RI P ++
Sbjct: 197 STSATVLADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQHRIQPTHKLFLTHSPV 256
Query: 236 IFTATDLPMKRKI--LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNT 293
+++ R + D ++I+ NL L+ ++ ELGKR+IN L +EAG L
Sbjct: 257 WLVSSE---TRDLTGFPDFCEQIILPKENL----LKELMRELGKRQINTLWVEAGANLAG 309
Query: 294 ALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+LI VDEL++YI+P L+G+ A + LP L + +E+++IG DI++
Sbjct: 310 SLIDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>gi|329118503|ref|ZP_08247207.1| riboflavin biosynthesis protein RibD [Neisseria bacilliformis ATCC
BAA-1200]
gi|327465238|gb|EGF11519.1| riboflavin biosynthesis protein RibD [Neisseria bacilliformis ATCC
BAA-1200]
Length = 374
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 138/345 (40%), Positives = 203/345 (58%), Gaps = 8/345 (2%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNPRVGCVI + +I+ G+ G HAE+ AL A G +T Y+TLEPC
Sbjct: 28 FTTSPNPRVGCVIARGGQIVGQGFHLRAGEPHAEVHALRQA---GELARGATAYVTLEPC 84
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
++ G TPPC +ALI +G+ +V+ A++DPNP V+GKG+A L +AGI+ + GL + EA E+N
Sbjct: 85 AHHGRTPPCAQALIAAGVSRVVAAVSDPNPQVAGKGLAMLAAAGIAAECGLFEAEARELN 144
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF SR++RG P++R+K A+SLD KT+L + SQWIT + +R D HI RA SCA+LTGIG
Sbjct: 145 HGFLSRIERGRPFLRLKCAASLDGKTALSDGQSQWITDEATRADVHILRAESCAVLTGIG 204
Query: 192 TVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS--CIFTATDLPMKRKIL 249
TVL D+P L VR P R+V+DS LR+ ++L + + T P K
Sbjct: 205 TVLADDPLLTVRGFPVVRAPARVVLDSRLRLPQTAKLLADPSAPVLLLTGEADPAKHAAF 264
Query: 250 EDLGH-EVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYI 308
H V +P + G + L A + L + I E+ E G L+ AL+ VDE++LY
Sbjct: 265 ARFAHVSVHTVPLSDGLISLPAALALLAREGIGEVLAETGATLSGALLRADLVDEIVLYQ 324
Query: 309 SPILIGE-AYNMFTLPPH-YSLDKKIKLKFHEIQKIGPDIRILAR 351
+ ++G A +F P + +L + ++ +G I+ + R
Sbjct: 325 AAKILGAPARGLFATPENPAALHAAPHWQTQSVETLGSGIKWVLR 369
>gi|26522770|dbj|BAC44857.1| pyrimidine deaminase/ pyrimidine reductase [Vibrio fischeri]
Length = 372
Score = 240 bits (613), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 139/371 (37%), Positives = 215/371 (57%), Gaps = 34/371 (9%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+ AK I ++PNP VGCV+VK+ +I+ G G HAE+ AL A G +
Sbjct: 11 MQKAILLAKQGIYTTAPNPNVGCVLVKDGKIVGEGAHLKAGEPHAEVHALRQA---GKEA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+G+KKVI A+ DPNP V+G+G+A L AGI
Sbjct: 68 QGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLNEAGIETA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N F +RM+ G P+V++K+A+SLD KT+L N SQWITSKE+R D +
Sbjct: 128 SGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEARQDVQRY 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AI + TV+ DN LNVR SI+ S+ QP R ++D + +
Sbjct: 188 RAQSGAIFSTAKTVIDDNASLNVRWSDLPPSIQESYQQAAIRQPMRFILDRQHALTSDLK 247
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNL------GKVDLQAVIIELGKR-KI 280
+ + G + I H ++ N++ +++L+ V+ ++ + +
Sbjct: 248 LFQASGEVV----------TISSQNTHPIVTSENHIQCCVDDDQLNLKEVVNKISRDFNV 297
Query: 281 NELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEI 339
N + +EAG L ++I E VDEL++Y++P L+G + ++ L ++ + I L +I
Sbjct: 298 NHIWVEAGATLAASMIKENLVDELIIYLAPKLMGADGRSIINLIGLETMSETIDLDIKDI 357
Query: 340 QKIGPDIRILA 350
+ +G DIRI A
Sbjct: 358 RMVGKDIRITA 368
>gi|342903772|ref|ZP_08725578.1| Riboflavin biosynthesis protein RibD [Haemophilus haemolyticus
M21621]
gi|341954599|gb|EGT81075.1| Riboflavin biosynthesis protein RibD [Haemophilus haemolyticus
M21621]
Length = 372
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 138/354 (38%), Positives = 210/354 (59%), Gaps = 21/354 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GKNAKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ TV+ D+P LNVR ++KT + QP R+++DS RI P ++ S
Sbjct: 197 STSATVIADDPSLNVRWDEFPENLKTEYKEEDLRQPVRVILDSQHRIQPTHKLFL-THSP 255
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ A++ D ++I+ NL L+ ++ ELGKR+IN L +EAG L +L
Sbjct: 256 VWLASNELRDLTGFPDFCEQIILPKENL----LKELMRELGKRQINTLWVEAGANLAGSL 311
Query: 296 ILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
I VDEL++YI+P L+G A + LP L + +E+++IG DI++
Sbjct: 312 IDTKLVDELIIYIAPKLLGNNARGLCQLPNLTQLADAPLWQLNELEQIGDDIKL 365
>gi|262370188|ref|ZP_06063515.1| pyrimidine deaminase [Acinetobacter johnsonii SH046]
gi|262315227|gb|EEY96267.1| pyrimidine deaminase [Acinetobacter johnsonii SH046]
Length = 367
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 126/342 (36%), Positives = 205/342 (59%), Gaps = 18/342 (5%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++ PNP VGCVIVK+ ++ GY G HAE+ A+ A G +T Y+TLEPC+
Sbjct: 29 STKPNPNVGCVIVKDGLLLGTGYHPQAGQLHAEVFAMREA---GEQTQGATAYVTLEPCA 85
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC + L+++G+ +V+IA DPNPLV+GKGV L AGI V G+ Q EA+++N
Sbjct: 86 HYGRTPPCAKGLVEAGVARVVIACPDPNPLVAGKGVQILKEAGIEVDVGICQTEAHQLNA 145
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF M G+P+VR+K+ASSLD +T++ + S+WIT +R D +RA S ++TGI T
Sbjct: 146 GFLKAMATGMPYVRLKVASSLDGRTAMASGESKWITGPAARLDVQHFRAISGVVITGIET 205
Query: 193 VLKDNPRLNVRSIK------TSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKR 246
VL D+P+LNVR ++ T QP R+V+D R+ ++L+ + + R
Sbjct: 206 VLADDPQLNVRQLQSVADLTTVVQPKRLVLDRQGRLPLTAQILQQPDTVMVMGP----YR 261
Query: 247 KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLL 306
+ L D+G VL + +D Q + + +I ++ +EAG L+TA + E VDE++
Sbjct: 262 QALADVG----VLQFAVQPLD-QLLKQLVQSHQIYDVMVEAGATLSTAFLQEKLVDEMIS 316
Query: 307 YISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
Y++P L+G++ + ++++ K ++ ++G D+R+
Sbjct: 317 YVAPTLLGQSARAMFNAEFSQMAEQLRFKLMDVTQLGDDVRL 358
>gi|54307992|ref|YP_129012.1| pyrimidine deaminase/pyrimidine reductase [Photobacterium profundum
SS9]
gi|46912418|emb|CAG19210.1| Putative pyrimidine deaminase/pyrimidine reductase [Photobacterium
profundum SS9]
Length = 371
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 138/366 (37%), Positives = 222/366 (60%), Gaps = 20/366 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK ++PNP VGC+I + I+ G+ G HAE+ AL A G
Sbjct: 10 MLRAIELAKRGRFTTAPNPNVGCIIAQGATIVGEGFHYQAGQPHAEVFAL---RAAGEQA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC +ALI + + +V+ A+ DPNP V G+G+ L AGI V+
Sbjct: 67 KGATAYVTLEPCSHFGRTPPCAQALINANVSRVVCAMVDPNPKVGGRGIEMLKIAGIEVQ 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ +A +N GF RM+ G+P+V++K+A+SLD +T+L N S+WIT E+R D +
Sbjct: 127 TGLLAADAQALNFGFIKRMKTGLPYVQLKLAASLDGRTALSNGESKWITGPEARADVQRF 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RAR+ AIL+ TV+ D+P LNVR +K + QP R++IDS R+ P F+
Sbjct: 187 RARAGAILSTSSTVIADDPSLNVRWSELGEPVKAEYPETALRQPTRVIIDSKNRVTPDFK 246
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIV-LPNNLGKVDLQAVIIELGKRKINELHIE 286
+ G + + M ++ D +V++ ++ +++L ++++EL K+ IN + +E
Sbjct: 247 LFSLEGETLLARAE--MGQETWPDSVTQVLIPKQDDSEQLNLTSLMLELAKQDINHIWVE 304
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG +L L+ G VDEL+LY +P L+G ++ ++ L S+ + + L+ +++ IGPD
Sbjct: 305 AGAELAGGLLAAGLVDELILYQAPKLMGCDSRSLINLKGLTSMSQVLNLEITDVRMIGPD 364
Query: 346 IRILAR 351
+RI+AR
Sbjct: 365 LRIIAR 370
>gi|440737909|ref|ZP_20917460.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens
BRIP34879]
gi|440381648|gb|ELQ18174.1| riboflavin biosynthesis protein RibD [Pseudomonas fluorescens
BRIP34879]
Length = 375
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 137/369 (37%), Positives = 209/369 (56%), Gaps = 33/369 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + + PNPRVGCVIV++ +I+ G+ + G HAE +AL A G
Sbjct: 13 MARALELARKGLYTTHPNPRVGCVIVRDGQIVGEGWHERTGEPHAEPNALR---AAGSKA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+ G TPPC +AL+ +G+ +V+ + DPNP V+G+G+ +L AGI V+
Sbjct: 70 RGATVYVTLEPCSHHGRTPPCADALVTAGVARVVAGMQDPNPEVAGRGMQRLAQAGIEVR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM+ G+P+VR+K+A SLD +T++ + SQWIT +R
Sbjct: 130 SGVLETEARALNPGFLKRMEHGLPFVRVKLAMSLDGRTAMASGESQWITGPAARAAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA++ +LTG TVL D RL VR ++ S P R++ID LR+ PF
Sbjct: 190 RAQASVVLTGADTVLADGARLTVRAAELGLDPETTALAMSRPPLRVLIDGRLRVPLNAPF 249
Query: 226 FRVLKGGG----SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN 281
F K G +C+ P G E +V+P G+VDL+A ++ L R +N
Sbjct: 250 F---KAGPALVITCVTAQNQFPR--------GPECLVVPGVEGQVDLRAALVALAARGVN 298
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQK 341
E+ +EAG L A +G VDE +++++ +G A P L +LK +++
Sbjct: 299 EVLVEAGPSLAGAFAQQGLVDEYVIFVAGKFLGSAARPLLDWPLEKLADAPQLKITDLRA 358
Query: 342 IGPDIRILA 350
+G D R+ A
Sbjct: 359 VGDDWRVTA 367
>gi|319760369|ref|YP_004124307.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer
str. BVAF]
gi|318039083|gb|ADV33633.1| riboflavin biosynthesis protein RibD [Candidatus Blochmannia vafer
str. BVAF]
Length = 383
Score = 240 bits (613), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 147/367 (40%), Positives = 212/367 (57%), Gaps = 21/367 (5%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
++ A Q A K + PNP VGCVIVK+ +I GY G NHAEI+AL + G
Sbjct: 13 LSRAFQLARKGRFTTMPNPNVGCVIVKDNHVIGEGYHMRAGENHAEINAL---SVAGNFA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPCT ALIKSGIK+V++++ DP+P ++G+G+ L +GI V
Sbjct: 70 KGATAYVTLEPCSHYGRTPPCTTALIKSGIKRVVVSMLDPHPDLTGRGIQLLKQSGILVS 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+M EA IN GF R++ G+PW+++K+ASSLD + ++ + S+WITS +SR D +
Sbjct: 130 HSIMLSEAESINKGFIKRIRTGMPWIKLKLASSLDGRVAMSSGESKWITSVQSRQDVQCF 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQ-------------PYRIVIDSYLRIDPFF 226
RA S IL+ TVL DNPRLNVR S + P R++IDS RI P
Sbjct: 190 RAESDVILSTASTVLMDNPRLNVRWSCFSKEMKNIYINGNQIRHPLRVIIDSTNRILPTH 249
Query: 227 RVLKGGGSCIFT--ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELG-KRKINEL 283
R ++ G I D K +E L IV + L +++L+ ++ L KIN +
Sbjct: 250 RFIQNEGGVILVRIKKDNLNWPKSVEQLLVSPIVNKSGLNQINLKKLMQYLACYLKINSV 309
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIK-LKFHEIQKI 342
+E+G L+ AL+ G VDE++LY + +G L P+ + IK K +I I
Sbjct: 310 WVESGPTLSGALLDIGLVDEVILYQAIKFLGSNAKPLCLLPNLNKLSDIKTFKLIDITSI 369
Query: 343 GPDIRIL 349
GPDIR++
Sbjct: 370 GPDIRLI 376
>gi|406675859|ref|ZP_11083045.1| riboflavin biosynthesis protein RibD [Aeromonas veronii AMC35]
gi|404626082|gb|EKB22892.1| riboflavin biosynthesis protein RibD [Aeromonas veronii AMC35]
Length = 369
Score = 240 bits (612), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 143/369 (38%), Positives = 211/369 (57%), Gaps = 29/369 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A+ ++PNP VG V+VK+ ++ G+ + G HAE+ AL A G +
Sbjct: 10 MSRALELARRGRYTTAPNPCVGAVLVKDGVVVGEGWHQKAGEPHAEVYAL---RAAGDNA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V G+G+ L AGI
Sbjct: 67 RGATAYVTLEPCSHHGRTPPCAEALINAGVARVVAAMVDPNPQVGGRGLRMLSEAGIKTD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA +N GFF RM+ P V +K+ +SLD +T++ + SQWITS ++R D
Sbjct: 127 FGLLASEAEALNPGFFKRMRTAFPRVTVKLGASLDGRTAMASGESQWITSPDARRDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RAR A+L+ TVL D L VR S+K S+ QP R++IDS R+ P
Sbjct: 187 RARHDAVLSSAETVLADGASLTVRWDELPPSVKASYPKETLRQPLRVIIDSQNRLTPDLP 246
Query: 228 VLKGGGSCIF----TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINEL 283
+ + + + + P + LE LP GK+DL ++ + L K+ +N +
Sbjct: 247 LFQSESPVLLARHKASGEWPAWVQQLE--------LPLLDGKLDLVSLFMLLAKQNVNSV 298
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKI 342
IEAG +L AL+ +G VDEL+LY +P L+G E +F LP L + KL +++ +
Sbjct: 299 LIEAGPRLCGALLEKGLVDELVLYQAPKLMGDEGRGLFHLPGLTRLFQAPKLAIKDVRMV 358
Query: 343 GPDIRILAR 351
GPDIRI A+
Sbjct: 359 GPDIRITAK 367
>gi|323491728|ref|ZP_08096906.1| riboflavin-specific deaminase [Vibrio brasiliensis LMG 20546]
gi|323314090|gb|EGA67176.1| riboflavin-specific deaminase [Vibrio brasiliensis LMG 20546]
Length = 368
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 140/365 (38%), Positives = 216/365 (59%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A++ AK I ++PNP VGCVI ++ I+ G+ G HAE+ AL A G
Sbjct: 12 MSRAIELAKGGIYTTAPNPNVGCVITRDGEIVGEGFHYRAGEPHAEVHALRMA---GEKS 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+ + KVI A+ DPNP V+G+G+ L AGI V+
Sbjct: 69 VGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPQVAGRGIQMLRDAGIEVE 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A +N F RM+ +P+V++K+A+SLD +T+L N SQWITS ++R D +
Sbjct: 129 VGLLEQDAINLNPAFIKRMKTAMPFVQLKMAASLDGQTALANGQSQWITSSKARQDVQKY 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TV+ DN LNVR S+++ + QP R+++D + P +
Sbjct: 189 RAQSGAILSTSKTVIDDNASLNVRWDDLPQSVQSHYPEQQLRQPVRVILDRQGLLTPELK 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELG-KRKINELHIE 286
+ G R I+ + G +V + N +VDL+A +L K IN L +E
Sbjct: 249 LFNTEGG-----------RLIVAEQG-DVELQLNTEHQVDLRATFADLANKHNINHLWVE 296
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L ++LI VDEL+LY++P ++G + + S+ + I+L +I+++G D
Sbjct: 297 AGATLASSLIKADLVDELVLYLAPKIMGSDGRGLLGALGLESMAEVIELDIKDIRQVGSD 356
Query: 346 IRILA 350
IRI+A
Sbjct: 357 IRIVA 361
>gi|253681051|ref|ZP_04861854.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str.
1873]
gi|253562900|gb|EES92346.1| riboflavin biosynthesis protein RibD [Clostridium botulinum D str.
1873]
Length = 372
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 136/320 (42%), Positives = 201/320 (62%), Gaps = 9/320 (2%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ +KL I + PNP VG +IVK+ +II GY K G NHAEI+AL NA DV
Sbjct: 6 MKRAIELSKLGIGYTYPNPLVGAIIVKDNKIIGEGYHKRFGENHAEINALKNAKE---DV 62
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPCS++G TPPC A+IKSGIKKVII ++DPNPLV+G+G L GI V
Sbjct: 63 SGATMYVTLEPCSHYGKTPPCVNAIIKSGIKKVIIGMSDPNPLVAGRGTRILKDNGIEVV 122
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+G++++E ++N F + +P+ +K A +LD K + + S+WI+++ SR H
Sbjct: 123 EGILKEEVKKVNEIFIKYITTKLPFCILKTAMTLDGKIATRDGDSKWISNEVSRQYVHEI 182
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSI-KTSHQPYRIVIDSYLRIDPFFRV--LKGGGSCI 236
R + I+ GIGT++KDNP L R I K RI++DS RI +V L+ I
Sbjct: 183 RHKVAGIMVGIGTIIKDNPSLTTRIINKKGRDSTRIIVDSKGRIPIEAKVLNLESQAKTI 242
Query: 237 FTATDLPMKRKI--LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
T+L + KI + D G EVI+ P +VDL+ ++ ELGKR I+ + +E G +LN +
Sbjct: 243 IVTTELANREKIEVIRDKGAEVIITPLCDNRVDLKYLMEELGKRNIDSILLEGGAELNYS 302
Query: 295 LILEGCVDELLLYISPILIG 314
++ +G VD+++ +ISP +IG
Sbjct: 303 VLNKGIVDKVISFISPKIIG 322
>gi|145634121|ref|ZP_01789832.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
PittAA]
gi|145268565|gb|EDK08558.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae
PittAA]
Length = 372
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 133/349 (38%), Positives = 209/349 (59%), Gaps = 21/349 (6%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+TLEPCS
Sbjct: 25 TTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENAKGTTAYVTLEPCS 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A +IN
Sbjct: 82 HYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLSDQAEKINK 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L+ T
Sbjct: 142 GFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSDVQKMRAKSSALLSTSAT 201
Query: 193 VLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT 240
++ D+P LNVR ++KT + QP R+++DS RI P ++ S ++ +
Sbjct: 202 IIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFL-TYSPVWLVS 260
Query: 241 DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300
+ P D ++I+ NL L+ ++ ELG+R+IN L +EAG L +LI
Sbjct: 261 NEPRDLTGFPDFCEQIILPKENL----LKELMQELGRRQINTLWVEAGANLAGSLIDAKL 316
Query: 301 VDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
VDEL++Y++P L+G+ A + LP L + +E+++IG DI++
Sbjct: 317 VDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>gi|153216165|ref|ZP_01950304.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 1587]
gi|124114423|gb|EAY33243.1| riboflavin biosynthesis protein RibD [Vibrio cholerae 1587]
Length = 367
Score = 240 bits (612), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 134/353 (37%), Positives = 212/353 (60%), Gaps = 29/353 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI + ++I+ G+ G HAE+ A+ A+ +T Y+TLEPC
Sbjct: 24 FTTSPNPNVGCVITRGEQIVGEGFHFRAGEPHAEVHAMRQASEL---TRGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC E LIK+G+ KVI A+ DPNP V+GKGV L AGI V+ GL++ +A +N
Sbjct: 81 SHYGRTPPCAEGLIKAGVAKVICAMQDPNPQVAGKGVQMLRDAGIEVEVGLLEADARALN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G+P+V++K+A+SLD +T+L N SQWITS +R D +RA++ AIL+
Sbjct: 141 RGFLKRMETGMPFVQLKMAASLDGQTALANGKSQWITSPAARKDVQRFRAQASAILSTSQ 200
Query: 192 TVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL DN L VR S++ + QP R+++D ++ P + +
Sbjct: 201 TVLADNASLAVRWHDLPQSVQAQYAEADLRQPLRVILDRQHQLHPELALYQ--------- 251
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
T P+ R E+ E+ + N K+DL+ ++ +L ++ +N++ +EAG QL +LI +
Sbjct: 252 TPSPVLRVASENA--ELCISAEN-EKLDLRELLAQLAQQHNVNQVWVEAGGQLAKSLIEQ 308
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDE++LY++P L+G + +F + + I+LK + + +G D+RI+A
Sbjct: 309 KLVDEIILYLAPKLMGSDGRGLFGALGLTEMAEAIELKIEDCRMVGADLRIIA 361
>gi|340781324|ref|YP_004747931.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Acidithiobacillus caldus SM-1]
gi|340555477|gb|AEK57231.1| Diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Acidithiobacillus caldus SM-1]
Length = 369
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 140/355 (39%), Positives = 202/355 (56%), Gaps = 10/355 (2%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL A+ + S+ PNPRVG V+V++ +I+ G G HAE+ AL A G
Sbjct: 1 MAEALTLARRGLYSTHPNPRVGAVVVRDGQIVGRGAHLRAGDAHAEVFALAQA---GERA 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPC + G TPPCT+A++ +G+ V+IAI DPNP V G G+A L G+ V+
Sbjct: 58 RGATLYVTLEPCCHHGRTPPCTDAILTAGVASVVIAIADPNPRVRGGGIALLQQQGLQVE 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G + +EA +NIGF RM+ G PW+R+K A SLD +L + SQW+T +R D
Sbjct: 118 LGCLAEEATALNIGFVRRMRSGRPWIRLKQAQSLDGCVALASGESQWLTGSAARADVQRE 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS-CIF 237
RA + AI+ G+GTVL DNPRL R P++I++DS+LR + G IF
Sbjct: 178 RAAASAIVVGVGTVLADNPRLAPRVDFPLCRFPHKIILDSHLRTPADAALFDTPGEIWIF 237
Query: 238 TATDLPMKRKI-LEDLGHEVIVLPNNLGKV--DLQAVIIELGKRKINELHIEAGYQLNTA 294
D +R+I L G + LP V DL A+ L +R+ NE+ +EAG +L T+
Sbjct: 238 HGQDADPERRIRLIQRGAHLQGLPMGPKGVGLDLAALWTALAQRECNEVLVEAGPELATS 297
Query: 295 LILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L+ G VDE LLY++P ++GE A L P+ LD + + I D+++
Sbjct: 298 LLRGGWVDEWLLYLAPKILGEGAQPAARLGPYAQLDAVPSWRLWRAETIAGDVKL 352
>gi|332982092|ref|YP_004463533.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Mahella
australiensis 50-1 BON]
gi|332699770|gb|AEE96711.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Mahella australiensis 50-1 BON]
Length = 363
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 141/320 (44%), Positives = 192/320 (60%), Gaps = 10/320 (3%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A++ ++ PNP VG VIVK RII GY K G HAEI+AL A G
Sbjct: 7 MQRALELARMGWGTTNPNPMVGAVIVKGGRIIGEGYHKKAGEPHAEINALREA---GEGA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
STVY+TLEPCS+FG TPPC +AL+K+G+K+V+IA+ DPNP V+G+G+ L AGI V
Sbjct: 64 RGSTVYVTLEPCSHFGRTPPCADALVKAGVKEVVIAMEDPNPRVAGRGINALRQAGIKVI 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+M++EA +N F + +P+V K A +LD K + N S+WIT++ SR H W
Sbjct: 124 TGIMEQEARRLNEVFIKYITSDMPFVIWKCAMTLDGKIATANGDSKWITNELSRQYVHWW 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR--SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIF 237
R R A+LTGIGTVL D+P L VR I QP RI+ DS + VL +
Sbjct: 184 RYRVSAVLTGIGTVLADDPMLTVRLPHINIEKQPVRIIADSLAKTPLDSNVLNIEQAPTI 243
Query: 238 TATDL---PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
AT P K + + G +VI+ + KVDL ++ EL KR+I+ + IE G L +
Sbjct: 244 MATSWSADPSKIETFKSKGADVIIT-DGKDKVDLVQLMRELHKREIDSVLIEGGPTLAAS 302
Query: 295 LILEGCVDELLLYISPILIG 314
I EG VD+ +++I+P LIG
Sbjct: 303 AIEEGLVDKAMVFIAPKLIG 322
>gi|320157206|ref|YP_004189585.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Vibrio vulnificus MO6-24/O]
gi|319932518|gb|ADV87382.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Vibrio vulnificus MO6-24/O]
Length = 368
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 134/354 (37%), Positives = 202/354 (57%), Gaps = 33/354 (9%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNP VGCV++++ I+ G+ G HAE+ A+ A G +T Y+TLEPCS
Sbjct: 25 TTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRMA---GDKAKGATAYVTLEPCS 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC E LIK+G+ +V+ A+ DPNP V+G+G A L AGI V GL+Q EA +N
Sbjct: 82 HYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREAGIEVSVGLLQTEAEALNP 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
F RM+ G+P+V++K+A+SLD +T+L N SQWITS ++R D +RA+S AIL+ T
Sbjct: 142 AFIKRMKTGMPFVQLKMAASLDGQTALANGKSQWITSPQARRDVQRFRAQSGAILSTSKT 201
Query: 193 VLKDNPRLNVR------SIKTS------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT 240
VL DN LNVR S++ + QP R+V+D + P ++ + G +
Sbjct: 202 VLADNASLNVRWSELPSSVQLALPQEQLRQPTRVVLDRQAELSPELKLYQTEGERLIVGP 261
Query: 241 --DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGK-RKINELHIEAGYQLNTALIL 297
DLP + G++DL + +L + + IN L IEAG L LI
Sbjct: 262 KGDLPAPL--------------DEHGQIDLPQLFAQLSQTQSINHLWIEAGATLAAKLIK 307
Query: 298 EGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDEL++Y++P L+G + + ++ I L +++ +GPDIRI+A
Sbjct: 308 HQLVDELIVYLAPKLMGSDGRGLIGALGLQAMSHVIDLDIKDVRMVGPDIRIIA 361
>gi|423685431|ref|ZP_17660239.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Vibrio fischeri SR5]
gi|371495343|gb|EHN70939.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Vibrio fischeri SR5]
Length = 372
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 139/371 (37%), Positives = 215/371 (57%), Gaps = 34/371 (9%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+ AK I ++PNP VGCV+VK +I+ G G HAE+ AL A G +
Sbjct: 11 MQKAILLAKQGIYTTAPNPNVGCVLVKNGKIVGEGAHLKAGEPHAEVHALRQA---GKEA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+G+KKVI A+ DPNP V+G+G+A L AGI
Sbjct: 68 QGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLNEAGIETA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N F +RM+ G P+V++K+A+SLD KT+L N SQWITSKE+R D +
Sbjct: 128 SGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEARQDVQRY 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TV+ D+ LNVR SI+ S+ QP R ++D + +
Sbjct: 188 RAQSGAILSTAKTVIDDDASLNVRWSDLPSSIQESYHQAAIRQPMRFILDRQHALTSDLK 247
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNL------GKVDLQAVIIELGKR-KI 280
+ + G + I H ++ N++ ++DL+ V+ ++ + +
Sbjct: 248 LFQASGEVV----------TISSQNTHPIVTSENHMQCCVDDDQLDLKEVVNKISRDFNV 297
Query: 281 NELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEI 339
N + +EAG L ++I + VDEL++Y++P L+G + ++ L ++ + I L +I
Sbjct: 298 NHIWVEAGATLAASMINDNLVDELIIYLAPKLMGADGRSIINLIGLETMSEAIDLDIKDI 357
Query: 340 QKIGPDIRILA 350
+ +G DIRI A
Sbjct: 358 RMVGKDIRITA 368
>gi|384265923|ref|YP_005421630.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387898936|ref|YP_006329232.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
amyloliquefaciens Y2]
gi|380499276|emb|CCG50314.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Bacillus amyloliquefaciens subsp. plantarum YAU
B9601-Y2]
gi|387173046|gb|AFJ62507.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Bacillus
amyloliquefaciens Y2]
Length = 371
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 135/343 (39%), Positives = 202/343 (58%), Gaps = 10/343 (2%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ NP VG V+VK +I+ G G HAE+ A+ A G + +Y+TLEPCS
Sbjct: 19 QTQSNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAIHMA---GRHAKGADLYVTLEPCS 75
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC E +IKSGIK+V IA+ DPNPLV+GKG+ L +AGI VK GL++++A E+N
Sbjct: 76 HYGKTPPCAELIIKSGIKRVFIAVKDPNPLVAGKGIGMLEAAGIEVKTGLLRQQAEELNK 135
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
F M+ G+P+V +K A+SLD KT+ S+WITS+ +R D+ +R +IL G GT
Sbjct: 136 MFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQQYRKSHQSILVGAGT 195
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG--SCIFTATDLPMKRKI-L 249
V DNP L R QP R+++D+ L I VL G + IFTA D +++K L
Sbjct: 196 VKADNPSLTCRLPDAVKQPVRVILDTKLTIPETANVLTDGAAPTWIFTAKDADVQKKDRL 255
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
LG + V+P + ++ + V+ L + I +++E G ++ + + EGC EL Y +
Sbjct: 256 TALG--IKVIPLDTDRIHVPEVLSILAENGIMSVYVEGGASVHGSFVKEGCFQELHFYFA 313
Query: 310 PILIGE--AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
P LIG A ++ + S+ L+F +I +IGPDI++ A
Sbjct: 314 PKLIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTA 356
>gi|359782233|ref|ZP_09285455.1| riboflavin biosynthesis protein RibD [Pseudomonas psychrotolerans
L19]
gi|359370026|gb|EHK70595.1| riboflavin biosynthesis protein RibD [Pseudomonas psychrotolerans
L19]
Length = 374
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 134/366 (36%), Positives = 209/366 (57%), Gaps = 24/366 (6%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
MT AL A L +++PNPRVGCVIV++ +++ G+ + GG HAE+ AL A G
Sbjct: 13 MTRALALAALGRYSTAPNPRVGCVIVRDGQVVGEGWHRQAGGPHAEVHALRQA---GEAA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNPLV+G+G+A+L +AGI+ +
Sbjct: 70 RGATAYVTLEPCSHHGRTPPCADALVAAGVAEVVAAMTDPNPLVAGRGLARLAAAGIATR 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM G P+VR+K+A SLD +T++ N SQWIT +R
Sbjct: 130 AGVLEAEARALNAGFIQRMLTGRPFVRVKLALSLDGRTAMANGESQWITGPAARQSVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA + ++TG TVL D RL VR + T P R+++D R+ PF
Sbjct: 190 RAEAGVVITGADTVLADGARLTVRPSELGLSGAELELATLRTPQRLLVDGRGRVPLDVPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + + + GH+ + LP G+VDL A++ LG ++N++ +
Sbjct: 250 F---QAGAARV---AGMANEAPAYAAAGHDYLALPGAQGQVDLAALLTHLGSEQVNDVLV 303
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G VDE L+++P +G + P L + +L+ +G D
Sbjct: 304 EAGPRLAGAFAQAGLVDEYHLFLAPKFLGSSARPLLDWPLEHLAQAPQLEILSATPVGAD 363
Query: 346 IRILAR 351
+ ++AR
Sbjct: 364 LHLIAR 369
>gi|269469107|gb|EEZ80655.1| pyrimidine deaminase [uncultured SUP05 cluster bacterium]
Length = 350
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 138/316 (43%), Positives = 189/316 (59%), Gaps = 20/316 (6%)
Query: 17 NPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGY 76
NP VGCVIVK+ +II+ GY ++ G H EI+AL Q + +T Y+TLEPCS+ G
Sbjct: 30 NPMVGCVIVKDDQIIAKGYHQTFGEAHGEINALKQIDHQ---AHGATFYVTLEPCSHQGK 86
Query: 77 TPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFS 136
TPPC +A+I SG KKVIIA+ DPNPLVSGKG+A L ++GI V GLM+ +A E+N GF
Sbjct: 87 TPPCAQAIIDSGAKKVIIALLDPNPLVSGKGMAMLENSGIEVITGLMENKALELNRGFVK 146
Query: 137 RMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKD 196
RMQ G+P+V KIA SLD KTS+ + S+WIT + +R D RA AI+TG GT++ D
Sbjct: 147 RMQTGLPFVTCKIAMSLDGKTSMTSGESKWITGEPARQDVQKLRANHQAIITGSGTIITD 206
Query: 197 NPRLNVRSIKTSHQPYRIVIDSYLRI-DPFFRVLKGGGSCIFTATDLPMKRKILEDLGHE 255
NP + VR + P R+VIDS +I D + + T+ ++LE
Sbjct: 207 NPSMTVRLNNINSSPLRVVIDSKNQIQDTALNIFSNDAPTLILNTN---NVQVLES---- 259
Query: 256 VIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIG- 314
GK+DL + LG + IN +EAG L A++ +DE ++Y +PIL+G
Sbjct: 260 --------GKLDLNDALKHLGDQGINNALLEAGPGLIGAMLEAKLIDEFIIYTAPILMGS 311
Query: 315 EAYNMFTLPPHYSLDK 330
EA +M TL + DK
Sbjct: 312 EANSMATLVLNKMSDK 327
>gi|229843994|ref|ZP_04464135.1| hypothetical protein CGSHi6P18H1_06131 [Haemophilus influenzae
6P18H1]
gi|229812988|gb|EEP48676.1| hypothetical protein CGSHi6P18H1_06131 [Haemophilus influenzae
6P18H1]
Length = 372
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 135/354 (38%), Positives = 210/354 (59%), Gaps = 21/354 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + + Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENAKGAIAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCSHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGSDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ T++ D+P LNVR ++KT + QP R+++DS RI P ++ S
Sbjct: 197 STSATIIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFL-THSP 255
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ ++ P D ++I+ NL L+ ++ ELG+R+IN L +EAG L +L
Sbjct: 256 VWLVSNEPRDLTGFPDFCEQIILPKENL----LKELMQELGRRQINTLWVEAGANLAGSL 311
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
I VDEL++YI+P L+G+ A + LP L + +E+++IG DI++
Sbjct: 312 IDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>gi|209694491|ref|YP_002262419.1| pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis
protein RibD) [Aliivibrio salmonicida LFI1238]
gi|208008442|emb|CAQ78607.1| pyrimidine deaminase/pyrimidine reductase (riboflavin biosynthesis
protein RibD) [Aliivibrio salmonicida LFI1238]
Length = 373
Score = 240 bits (612), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 143/365 (39%), Positives = 216/365 (59%), Gaps = 21/365 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q AK I ++PNP VGCV+VK I+ G G HAE+ AL A+ +
Sbjct: 11 MQRAIQLAKRGIYTTAPNPNVGCVLVKNGLIVGEGAHLKAGEPHAEVHALRQASE---NA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+G+ KVI A+ DPNP V+G+G+A L +AGI
Sbjct: 68 KGATAYVTLEPCSHYGRTPPCAEGLIKAGVVKVICAMVDPNPQVAGRGLAMLEAAGIETA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ E+ +N F +RM+ G P+V++K+A+SLD KT+L N SQWITSKE+R D +
Sbjct: 128 SGLLETESRALNPSFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEARQDVQRY 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA++ IL+ TV++DN LNVR SI+ S+ QP R+++D ++
Sbjct: 188 RAQAGVILSTAKTVIEDNASLNVRWSDLPNSIQESYLEAEVRQPLRVILDRQHQLTSELA 247
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIE 286
+ G+ + T + P + H L NN ++ L VI ++ + +N L +E
Sbjct: 248 LFNTTGN-VVTVSHQP-SHPLSHPESHLYCDLDNN-KQLVLSDVIQKIAQEHNVNHLWVE 304
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L ++I EG VDEL++Y++P L+G + ++ L ++ + I L +I+ +G D
Sbjct: 305 AGATLAASMICEGLVDELIIYLAPKLMGADGRSIVNLIGLEAMSEAINLDISDIRMVGKD 364
Query: 346 IRILA 350
IRI A
Sbjct: 365 IRITA 369
>gi|420649784|ref|ZP_15137280.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-32]
gi|391521773|gb|EIR74217.1| riboflavin biosynthesis protein RibD [Yersinia pestis PY-32]
Length = 311
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/309 (40%), Positives = 189/309 (61%), Gaps = 22/309 (7%)
Query: 56 GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAG 115
G +T Y+TLEPCS++G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L AG
Sbjct: 3 GEKARGATAYVTLEPCSHYGRTPPCADALVAAGVIRVVAAMQDPNPEVAGRGLYKLKQAG 62
Query: 116 ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRND 175
I+V GLM EA +N+GF RM+ G P+V++K+A+SLD +T++ + SQWITS ++R D
Sbjct: 63 IAVDHGLMLAEAEAVNLGFLKRMRTGFPYVQLKMAASLDGRTAMASGESQWITSPQARQD 122
Query: 176 SHIWRARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRID 223
+RA S AIL+ TVL D+P L VR + QP +I++DS+ R+
Sbjct: 123 VQRFRAESSAILSTSATVLADDPSLTVRWQDLDAETQVLYPHDSVRQPVKIILDSHNRVT 182
Query: 224 PFFRVLKGGGSCIFT---ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKI 280
P +V++ G C A D P I E ++LP VDL ++++LGKR I
Sbjct: 183 PRHKVIQQDGPCWLARVDADDQPWPGNI------EQLLLPRYGNGVDLVVLMMQLGKRNI 236
Query: 281 NELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEI 339
N + +EAG QL AL+ G VDEL+LYI+P L+G +A + L +L + + F ++
Sbjct: 237 NSVWVEAGPQLAGALLQAGVVDELILYIAPKLLGSDARGLCELAGLTNLSQAPEFAFSDV 296
Query: 340 QKIGPDIRI 348
+ +GPD+R+
Sbjct: 297 RLVGPDLRL 305
>gi|433653763|ref|YP_007297471.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
thermosaccharolyticum M0795]
gi|433291952|gb|AGB17774.1| riboflavin biosynthesis protein RibD [Thermoanaerobacterium
thermosaccharolyticum M0795]
Length = 356
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/319 (43%), Positives = 198/319 (62%), Gaps = 10/319 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ AKL + +++PNP VG VIVK RII GY + GG HAEI+AL + DV
Sbjct: 1 MKRALQLAKLGLGHTNPNPLVGAVIVKNGRIIGEGYHEYYGGPHAEINALKSVKE---DV 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ +Y+TLEPC ++G TPPC +A++KSGIK V IA+ DPN LVSGKG+ L AG++V
Sbjct: 58 IGAQLYVTLEPCCHYGKTPPCVDAIVKSGIKDVYIAMEDPNKLVSGKGIKHLKEAGLNVY 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++EA +IN F + P+V +K A ++D K + S+WIT+++SR HI
Sbjct: 118 TGLLKEEAEKINEIFIKYITTKKPYVILKSAMTIDGKIATTTGDSKWITNEKSREHVHIM 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFR--VLKGGGSCIF 237
R AI+ G+ TV+KDNP L R I P R+++DS RI P V+ I
Sbjct: 178 RGCVMAIMVGVNTVIKDNPYLTAR-IDGFKNPLRVIVDSRGRI-PLNSNVVIDKSAKTIV 235
Query: 238 TATDLPMKRKI--LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
TD+ +K+ L DLG +V+VL G+VDL+ ++ LG+R I+ + IE G LN +
Sbjct: 236 ATTDMMHYKKVKALSDLGVDVVVLDKLNGEVDLKKLMDMLGERGIDSVIIEGGGTLNYSA 295
Query: 296 ILEGCVDELLLYISPILIG 314
+ EG VD+++ YI+P +IG
Sbjct: 296 LKEGIVDKVMFYIAPKIIG 314
>gi|27904888|ref|NP_778014.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
gi|46396884|sp|Q89AB0.1|RIBD_BUCBP RecName: Full=Riboflavin biosynthesis protein RibD; Includes:
RecName:
Full=Diaminohydroxyphosphoribosylaminopyrimidine
deaminase; Short=DRAP deaminase; AltName:
Full=Riboflavin-specific deaminase; Includes: RecName:
Full=5-amino-6-(5-phosphoribosylamino)uracil reductase;
AltName: Full=HTP reductase
gi|27904286|gb|AAO27119.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Buchnera
aphidicola str. Bp (Baizongia pistaciae)]
Length = 372
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 213/370 (57%), Gaps = 32/370 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK S+ +SPNP VGC+IV I+ G+ K G HAEI AL G
Sbjct: 7 MKKAIKLAKKGSLTTSPNPNVGCIIVNNNIIVGSGWHKKTGMKHAEIYAL---KTSGEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T YITLEPCS+FG TPPC AL K GI +V+IA DPNP VSG GV L GI V
Sbjct: 64 KGATAYITLEPCSHFGKTPPCCVALTKYGISRVVIATLDPNPKVSGNGVKWLKKHGILVT 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G + KE+ +IN GFF RM GIPW+++K+ASS+D +T+L N S+WITS ++R+D
Sbjct: 124 IGTLSKESIKINKGFFQRMTTGIPWIKLKLASSIDGRTALNNGKSKWITSDKARHDVQHV 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS----------IKTS----HQPYRIVIDSYLRIDPF 225
R +S AI++ T+L DNP L VR+ +K S QP R++IDS RI P
Sbjct: 184 REKSDAIISSSETILFDNPLLTVRNTNNNDNNQKLLKHSKTFLKQPIRVIIDSKNRITPS 243
Query: 226 FRVLKGGGSCIFTATDLPMKRKILED----LGH-EVIVLPNNLGKVDLQAVIIELGKRKI 280
+ +K G +I D H + I+L N K+DL ++ L K +I
Sbjct: 244 HKCIKQPGLLFLI--------RIHSDNNIWPSHIKQIILNNKSKKIDLIDLVKMLAKYQI 295
Query: 281 NELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEI 339
N + IEAG L+++ + ++EL++YI+P ++G A +F L + +L + KF +I
Sbjct: 296 NNILIEAGPSLSSSFLKLNIINELIIYIAPKILGNYAKPLFFLENYSNLSDVPQFKFEKI 355
Query: 340 QKIGPDIRIL 349
+IG D++++
Sbjct: 356 TQIGKDLKLI 365
>gi|384181933|ref|YP_005567695.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|324328017|gb|ADY23277.1| riboflavin biosynthesis protein RibD [Bacillus thuringiensis
serovar finitimus YBT-020]
Length = 370
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 138/356 (38%), Positives = 204/356 (57%), Gaps = 9/356 (2%)
Query: 1 MTLALQQAK-LSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +ALQ A+ S +SPNP VG V+VK+ I+ G G HAE+ AL A G
Sbjct: 7 MRIALQLAEGTSGQTSPNPMVGAVVVKDGNIVGMGAHLRAGEEHAEVHALHMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPCS+FG TPPC E+LIK +K+V+IA D NPLVSG G +L AGI V
Sbjct: 64 KGATVYVTLEPCSHFGKTPPCCESLIKKEVKRVVIATLDCNPLVSGNGKRRLEEAGIEVT 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N FF M+ P+V +K A SLD KT+ S+WIT +E+R D H +
Sbjct: 124 TGVLEAEAVLLNRYFFHYMKTKRPFVTIKTAMSLDGKTATVTGESKWITGEEARADVHQY 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGG--GSCIF 237
R AIL G+ TV+ DNP L R P R+++D++LR P V+ G + IF
Sbjct: 184 RHTHDAILVGVNTVIADNPHLTTRIPNGGKHPIRVILDTHLRTPPSSHVITDGLAPTWIF 243
Query: 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297
D+ K KI +++ ++++Q ++ LG+++I L +E G ++ + +
Sbjct: 244 VGKDVN-KEKIASYESENIVIFQMKTKQIEIQDILDLLGEKQILSLFVEGGQTVHASFLQ 302
Query: 298 EGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+E++ YISP LIG +A +F +L + LK E+++IG DI+I+A
Sbjct: 303 TNNFNEIVTYISPKLIGGKDAPTLFGGNGFSTLQDALSLKIQEMKQIGDDIKIVAH 358
>gi|339492799|ref|YP_004713092.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
gi|338800171|gb|AEJ04003.1| riboflavin biosynthesis protein RibD [Pseudomonas stutzeri ATCC
17588 = LMG 11199]
Length = 366
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 140/366 (38%), Positives = 207/366 (56%), Gaps = 25/366 (6%)
Query: 1 MTLALQQAKLSINSS-PNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A+ + S+ PNPRVGCVIV + ++ G+ G HAE+ AL A G
Sbjct: 8 MARALQLARKGLYSTHPNPRVGCVIVADGELVGEGWHVRAGEPHAEVHALRQA---GERA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EAL+K+G+ +V+ A+ DPNP V+G G+ +L SAGI V
Sbjct: 65 RGATAYVTLEPCSHYGRTPPCAEALVKAGVGRVVAAMQDPNPQVAGNGLERLRSAGIEVA 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA E+N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R +
Sbjct: 125 SGVLEGEARELNAGFTKRMESGLPYVRAKLAMSLDGRTAMASGESQWITGPAARAEVQRL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRI---DPF 225
RARS +LTG TVL D RL VR ++ P R+++D LR+ PF
Sbjct: 185 RARSSVVLTGADTVLMDVARLTVRGAELGLDAETIALALQRPPLRVLVDGRLRVPLDAPF 244
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F+ + + +R GHE +VL +VDL A++ EL R NE+ +
Sbjct: 245 FQAGPALVVTVVAGCEETYRRA-----GHEALVLGQE--RVDLAALLRELAARGANEVLV 297
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG +L A G +DE L+++ +G + P + + +LK +I+ +G D
Sbjct: 298 EAGPRLVGAFASLGLIDEYQLFMAAKFLGSSARPLLELPLERMSEARELKIVDIRAVGDD 357
Query: 346 IRILAR 351
+I+AR
Sbjct: 358 WKIVAR 363
>gi|389720974|ref|ZP_10187730.1| pyrimidine deaminase [Acinetobacter sp. HA]
gi|388609255|gb|EIM38447.1| pyrimidine deaminase [Acinetobacter sp. HA]
Length = 362
Score = 239 bits (611), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 132/343 (38%), Positives = 209/343 (60%), Gaps = 20/343 (5%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++ PNP VGCVIVK+ ++ G+ G HAE+ A+ A Q + +T Y+TLEPC+
Sbjct: 24 STKPNPNVGCVIVKDGVVVGEGFHPKAGQPHAEVFAMRQAGEQAH---GATAYVTLEPCA 80
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC + L+++G+ KV++A DPNPLV+GKGV L AGI+V+ G+ + EA+ +N
Sbjct: 81 HYGRTPPCAKGLVEAGVAKVVVACPDPNPLVAGKGVQILKDAGINVEVGICEDEAHPLNY 140
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF M G+P+VR+KIA SLD +T++ + S+WIT E+R D WRA S ++TGI T
Sbjct: 141 GFLKAMATGMPYVRVKIALSLDGRTAMASGESKWITGIEARQDVQHWRAISGGVITGIET 200
Query: 193 VLKDNPRLNVRSIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKR 246
VL D+ +LNVRS+K QP RI++D R+ ++L+ + + R
Sbjct: 201 VLADDCQLNVRSLKGVDDISRIVQPKRIILDRQGRLPLTAKILEQPETVMVMGP----YR 256
Query: 247 KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLL 306
+ L DLG VI L K LQ ++ + +I ++ +EAG L++A + E VDEL+
Sbjct: 257 QELADLG--VIQLEIQPLKELLQYLV---QQHQIYDVLVEAGATLSSAFLQEKLVDELIS 311
Query: 307 YISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
Y++P L+G+ A +MF + ++++ K ++ ++G D+R
Sbjct: 312 YVAPTLLGQTARSMFN-AEFSQMAEQLRFKLQDVTRLGDDVRF 353
>gi|343497592|ref|ZP_08735655.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
nigripulchritudo ATCC 27043]
gi|342817784|gb|EGU52660.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
nigripulchritudo ATCC 27043]
Length = 365
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 128/354 (36%), Positives = 208/354 (58%), Gaps = 30/354 (8%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VGCVI K+ +I+ G G HAE+ AL A G + +T Y+TLEPC
Sbjct: 23 FTTSPNPNVGCVIAKDGKIVGEGLHFKAGEPHAEVHAL---RAAGENAKGATAYVTLEPC 79
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S++G TPPC+EALIK+G+ +V+ A+ DPNP+V+G+GV L AG+ V+ G+++ +A +N
Sbjct: 80 SHYGRTPPCSEALIKAGVARVVCAMQDPNPVVAGRGVKMLRDAGVEVEVGVLESDARALN 139
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF RM+ G P+V++K+A+SLD +T+L N S+WITS ++R D +RA+SCAI++
Sbjct: 140 KGFLKRMETGKPFVQLKLAASLDGQTALSNGESKWITSPQARQDVQAYRAQSCAIVSTSK 199
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TV+ DN LNVR + QP R+++D ++ + + G+
Sbjct: 200 TVIDDNASLNVRWSELPESTQVIYPESELRQPARVILDRQQKLHQNLSLFQTPGNIEVVD 259
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTALILE 298
P + N+ G+VD+ V +L ++ I + +EAG L +LI +
Sbjct: 260 PKSPYFQL-------------NSAGQVDIPYVFDKLAEKLGIQHIWVEAGATLAASLIEQ 306
Query: 299 GCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+DEL++Y++P L+G + + + S+ + I L+ ++++ +GPDIRI A+
Sbjct: 307 DLMDELIVYLAPKLMGSDGRGLVHILGLTSMQQAIDLEINDVRMVGPDIRITAK 360
>gi|378697150|ref|YP_005179108.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Haemophilus influenzae 10810]
gi|301169668|emb|CBW29269.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Haemophilus influenzae 10810]
Length = 372
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/354 (38%), Positives = 210/354 (59%), Gaps = 21/354 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENAKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPC+++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ TV+ D+P LNVR ++KT + QP R+++DS RI P ++ S
Sbjct: 197 STSTTVIADDPSLNVRWDEFPENLKTGYKKEWLRQPVRVILDSQHRIQPTHKLFL-THSP 255
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ + P D ++I+ NL L+ ++ ELGKR+IN L +EAG L +L
Sbjct: 256 VWLVSSEPRDLTGFPDFCEKIILPKENL----LKELMRELGKRQINTLWVEAGANLAGSL 311
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
I VDEL++Y++P L+G+ A + LP L + +E+++IG DI++
Sbjct: 312 IDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>gi|343500592|ref|ZP_08738482.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
tubiashii ATCC 19109]
gi|418477325|ref|ZP_13046458.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
gi|342819954|gb|EGU54785.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase [Vibrio
tubiashii ATCC 19109]
gi|384575065|gb|EIF05519.1| diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Vibrio tubiashii NCIMB 1337 = ATCC 19106]
Length = 368
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/365 (37%), Positives = 217/365 (59%), Gaps = 30/365 (8%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ A+ AK I ++PNP VGCVIV +I+ G+ G HAE+ A+ A G
Sbjct: 12 MSRAIDLAKGGIYTTAPNPNVGCVIVNNDQIVGEGFHFRAGEPHAEVHAMRMA---GEKT 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+ + KVI A+ DPNP+V+G+G+ L AGI V+
Sbjct: 69 IGATAYVTLEPCSHYGRTPPCAEGLIKAKVAKVICAMQDPNPVVAGRGIKMLRDAGIKVE 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A +N F +M+ G+P+V++K+A+SLD +T+L N SQWITS ++R D +
Sbjct: 129 VGLLEQDALALNPAFIKKMKTGMPFVQLKMAASLDGQTALKNGQSQWITSPQARQDVQKF 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TV++DN LNVR S+++ + QP R+++D + P +
Sbjct: 189 RAQSGAILSTSKTVIEDNASLNVRWDDLSPSLQSHYDQANLRQPVRVILDRQQALTPDLK 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIE 286
+ K G I A K ++ +L ++DL A L ++ IN L +E
Sbjct: 249 LFKVDGEIITVAP----KGELTPELDAN--------QQLDLSATFKALSQQHNINHLWVE 296
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L ++LI + VDEL++Y++P ++G + +F S++ + L +++++G D
Sbjct: 297 AGATLASSLIKQNLVDELVIYLAPKIMGSDGRGLFGALGLESMEHVLDLNIQDVRQVGKD 356
Query: 346 IRILA 350
IRI+A
Sbjct: 357 IRIIA 361
>gi|295696432|ref|YP_003589670.1| riboflavin biosynthesis protein RibD [Kyrpidia tusciae DSM 2912]
gi|295412034|gb|ADG06526.1| riboflavin biosynthesis protein RibD [Kyrpidia tusciae DSM 2912]
Length = 371
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 131/359 (36%), Positives = 204/359 (56%), Gaps = 12/359 (3%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M ALQ A +SPNP VG VIVK+ ++ G GG HAE+ AL A G
Sbjct: 7 MRWALQLAASARGQTSPNPMVGAVIVKDGELVGQGAHLKAGGPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+TVY+TLEPC + G TPPC+ ALI+ G+ +V++A+ DPNPLV+G G+ +L AG+ V+
Sbjct: 64 RGATVYVTLEPCDHHGRTPPCSRALIEHGVARVVVAMVDPNPLVAGGGIRRLRQAGVKVE 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++K+A +N GF RM RG PWV KIA +LD + + S+WIT +++R H
Sbjct: 124 VGLLEKDARALNRGFIQRMTRGRPWVIAKIAMTLDAQIATRTGESRWITGEKAREKVHEL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTS--HQPYRIVIDSYLRIDPFFRVLK--GGGSC 235
R+R A++TG+GTV+ D+PRL R QP R+V+DS LRI ++L +
Sbjct: 184 RSRVDAVVTGVGTVIADDPRLTARPPGGGLPRQPLRVVLDSRLRIPADAQILSTVSAPTV 243
Query: 236 IFTATDLPMKRKILEDLGHEV---IVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLN 292
+ L ++ E V ++ P++ G +DL+ V LG+ +N +EAG +L
Sbjct: 244 VCAGRGLAPAERVAELAARGVDVWLIDPDSQGGLDLRQVFGRLGEAGVNTALVEAGGRLQ 303
Query: 293 TALILEGCVDELLLYISP-ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
++ G VDE++ +++P +L+G L + +L+ ++ +G D+++ A
Sbjct: 304 GSVFRSGLVDEVVFFLAPKLLMGSGIPALAGEGVERLAQSAQLEITGVETVGEDLKVTA 362
>gi|197248845|ref|YP_002145398.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Agona str. SL483]
gi|440761941|ref|ZP_20941007.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Agona str. SH11G1113]
gi|440768688|ref|ZP_20947653.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|440772520|ref|ZP_20951424.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|197212548|gb|ACH49945.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|436416407|gb|ELP14313.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Agona str. SH08SF124]
gi|436418469|gb|ELP16353.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Agona str. SH10GFN094]
gi|436424233|gb|ELP22016.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Agona str. SH11G1113]
Length = 367
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 213/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV I+ GY + G HAE+ AL A A+
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGDPHAEVHALRMAGAK---A 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ +S+D +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEALNKGFLKRMRTGFPYLQLKLGTSVDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR S + S+ QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G T + D I +P + G +DL ++++LG+++IN + +EA
Sbjct: 244 IVQQPGETWIARTQ--EDSRAWPD-AVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A + LP L + F EI+ +GPD+
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPDV 360
>gi|319897565|ref|YP_004135762.1| riboflavin biosynthesis protein ribd [Haemophilus influenzae F3031]
gi|317433071|emb|CBY81445.1| riboflavin biosynthesis protein RibD [Haemophilus influenzae F3031]
Length = 372
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 136/354 (38%), Positives = 210/354 (59%), Gaps = 21/354 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENAKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPC+++G T PC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCAHYGRTSPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WITS ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITSPDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ TV+ D+P LNVR ++KT + QP R+++DS RI P ++ S
Sbjct: 197 STSTTVIADDPSLNVRWDEFPENLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFL-THSP 255
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ + P D ++I+ NL L+ ++ ELGKR+IN L +EAG L +L
Sbjct: 256 VWLVSSEPRDLTGFPDFCEQIILPKENL----LKELMRELGKRQINTLWVEAGANLAGSL 311
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
I VDEL++Y++P L+G+ A + LP L + +E+++IG DI++
Sbjct: 312 IDAKLVDELIIYVAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>gi|149187995|ref|ZP_01866290.1| pyrimidine reductase [Vibrio shilonii AK1]
gi|148837983|gb|EDL54925.1| pyrimidine reductase [Vibrio shilonii AK1]
Length = 369
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 139/365 (38%), Positives = 211/365 (57%), Gaps = 29/365 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ AK ++PNP VGCVI ++ GY K G HAE+ AL AA +
Sbjct: 12 MSRALELAKRGRFTTAPNPNVGCVITLNNEVVGEGYHKKAGEPHAEVHALRMAAER---A 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+G+ KVI A++DPNP V+G+G L AGI V
Sbjct: 69 KGATAYVTLEPCSHYGRTPPCAEGLIKAGVSKVICAMSDPNPQVAGRGFNMLREAGIEVS 128
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++++A +N GF +M+ G+P+V++K+A+SLD +T+L N SQWIT E+R D +
Sbjct: 129 VGLLEQDARALNPGFLKKMETGMPFVQLKMAASLDGQTALANGISQWITGPEARRDVQAY 188
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKT-SH-----------QPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TV++DN LNVR + SH QP R+++D + +
Sbjct: 189 RAQSGAILSTSQTVVEDNASLNVRWDELPSHVTDVIKPDELRQPTRVILDRQNALSRELK 248
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGK-RKINELHIE 286
+ + G I A G ++ V N+ ++DL + L K ++IN + IE
Sbjct: 249 LFQSEGDIIRVA-----------QAGGDLNVTMNSANQLDLAETLQGLAKDQQINHVWIE 297
Query: 287 AGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
AG L ++I + VDEL++Y++P L+G + + + I+L +I+ +G D
Sbjct: 298 AGATLAGSMIQQQLVDELIVYLAPKLMGADGRGLIGALGLTEMQDVIELDIKDIRMVGSD 357
Query: 346 IRILA 350
IRI+A
Sbjct: 358 IRIVA 362
>gi|418848933|ref|ZP_13403668.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
gi|392822280|gb|EJA78092.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Newport str. CVM 37978]
Length = 367
Score = 239 bits (610), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 213/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP+VGCVIV I+ GY G HAE+ AL A A+
Sbjct: 7 MARALKLAQRGRFTTHPNPKVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK---A 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ +S+D +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR S + S+ QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G T + D I +P + G +DL ++++LG+++IN + +EA
Sbjct: 244 IVQQPGETWIARTQ--EDSRAWPD-AVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A + LP L + F EI+ +GPD+
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPDV 360
>gi|308174118|ref|YP_003920823.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens DSM 7]
gi|384158664|ref|YP_005540737.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens TA208]
gi|384164894|ref|YP_005546273.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens LL3]
gi|384167725|ref|YP_005549103.1| riboflavin biosynthesis protein ribD [Bacillus amyloliquefaciens
XH7]
gi|307606982|emb|CBI43353.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens DSM 7]
gi|328552752|gb|AEB23244.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens TA208]
gi|328912449|gb|AEB64045.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase;
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Bacillus amyloliquefaciens LL3]
gi|341827004|gb|AEK88255.1| riboflavin biosynthesis protein ribD [Bacillus amyloliquefaciens
XH7]
Length = 371
Score = 239 bits (610), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 133/343 (38%), Positives = 201/343 (58%), Gaps = 10/343 (2%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
+ PNP VG V+VK +I+ G G HAE+ A+ A G + +Y+TLEPCS
Sbjct: 19 QTQPNPLVGAVVVKNGQIVGMGAHLQYGEAHAEVHAINMA---GSHAKGADLYVTLEPCS 75
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC E ++KSGIK+V IA+ DPNPLV+GKG+ L +AGI VK GL++++A E+N
Sbjct: 76 HYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEAAGIEVKTGLLRQQAEELNK 135
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
F M+ G+P+V +K A+SLD KT+ S+WITS+ +R D+ +R +IL G GT
Sbjct: 136 MFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQQYRKSHQSILVGAGT 195
Query: 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG--SCIFTATDLPMKRKI-L 249
V DNP L R QP R+++D+ L + VL G + IFTA +++K L
Sbjct: 196 VKADNPSLTCRLPDAVKQPVRVILDTKLTVPETANVLTDGAAPTWIFTAAGSDVRKKDRL 255
Query: 250 EDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYIS 309
LG +V L + ++ + V+ L + I +++E G ++ + + GC DEL Y +
Sbjct: 256 TALGIKVFTLETD--RIHIPEVLSILAENGIMSVYVEGGASVHGSFVKAGCFDELHFYFA 313
Query: 310 PILIGE--AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
P LIG A ++ + S+ L+F +I +IGPDI++ A
Sbjct: 314 PTLIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTA 356
>gi|417842563|ref|ZP_12488645.1| Riboflavin biosynthesis protein RibD [Haemophilus haemolyticus
M21127]
gi|341951401|gb|EGT77973.1| Riboflavin biosynthesis protein RibD [Haemophilus haemolyticus
M21127]
Length = 372
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 140/360 (38%), Positives = 207/360 (57%), Gaps = 33/360 (9%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GDNAKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPCS++G TPPC LI +GI KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCSHYGRTPPCALGLIDAGIVKVIAAMQDPNPQVAGKGLKMLSDAGIESAVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ TV+ D+P LNVR ++KT + QP R+++DS RI P ++
Sbjct: 197 STSATVVADDPSLNVRWNEFPENLKTEYKKEDLRQPVRVILDSQHRIQPTHKLFLTHSPV 256
Query: 236 IFTA------TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGY 289
+ TD P D ++I+ NL L+ ++ ELGKR+IN L +EAG
Sbjct: 257 WLVSSEARDLTDFP-------DFCEQIILPKENL----LKELMRELGKRQINTLWVEAGA 305
Query: 290 QLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
L +LI VDEL++YI+P L+G A + LP L + +E+++IG DI++
Sbjct: 306 NLAGSLIDTKLVDELIIYIAPKLLGNNARGLCQLPNLTQLADAPLWQLNELEQIGDDIKL 365
>gi|423205478|ref|ZP_17192034.1| riboflavin biosynthesis protein RibD [Aeromonas veronii AMC34]
gi|404624019|gb|EKB20864.1| riboflavin biosynthesis protein RibD [Aeromonas veronii AMC34]
Length = 369
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 141/369 (38%), Positives = 211/369 (57%), Gaps = 29/369 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M+ AL+ A+ ++PNP VG V+VK+ ++ G+ + G HAE+ AL A G +
Sbjct: 10 MSRALELARRGRYTTAPNPCVGAVLVKDGVVVGEGWHQKAGEPHAEVYAL---RAAGDNA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC EALI +G+ +V+ A+ DPNP V G+G+ L AGI
Sbjct: 67 RGATAYVTLEPCSHHGRTPPCAEALINAGVARVVAAMVDPNPQVGGRGLRMLSEAGIKTD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA +N GFF RM+ P V +K+ +SLD +T++ + SQWITS ++R D
Sbjct: 127 FGLLASEAEALNPGFFKRMRTAFPRVTVKLGASLDGRTAMASGESQWITSPDARRDVQRL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RAR A+L+ TVL D L VR S+K S+ QP R+++DS R+ P
Sbjct: 187 RARHDAVLSSAETVLADGASLTVRWDELPPSVKASYPKETLRQPLRVIVDSQNRLTPDLP 246
Query: 228 VLKGGGSCIF----TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINEL 283
+ + + + + P + LE LP GK+DL ++ + L K+ +N +
Sbjct: 247 LFQSESPVLLARHKASGEWPEWVQQLE--------LPLLDGKLDLVSLFMLLAKQNVNSV 298
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKI 342
+EAG +L AL+ +G VDEL+LY +P L+G E +F LP L + KL +++ +
Sbjct: 299 LVEAGPRLCGALLEKGLVDELVLYQAPKLMGDEGRGLFHLPGLTRLFQAPKLAIKDVRMV 358
Query: 343 GPDIRILAR 351
GPDIRI A+
Sbjct: 359 GPDIRITAK 367
>gi|330445267|ref|ZP_08308919.1| riboflavin biosynthesis protein RibD [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489458|dbj|GAA03416.1| riboflavin biosynthesis protein RibD [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 374
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/369 (38%), Positives = 212/369 (57%), Gaps = 28/369 (7%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+Q AK ++PNP VGCVI + + I+ G+ G HAE+ AL A G
Sbjct: 10 MLRAIQLAKRGRFTTAPNPNVGCVIARGEEIVGEGFHYRAGEPHAEVFALKQA---GTLA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC EALIKSGI KVI A+ DPNP+V+G+GV L AGI V+
Sbjct: 67 KGATAYVTLEPCSHYGRTPPCAEALIKSGISKVICAMVDPNPMVAGRGVEMLQKAGIDVQ 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+++EA +N+GF M + +P+V +K+ASSLD KT+L N S+WIT +R D
Sbjct: 127 VGLLEEEAQALNLGFIKSMTKKMPFVELKLASSLDGKTALANGESKWITGPCARADVQRH 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RAR+ AIL+ TV+ D+P LNVR + + QP R++IDS R+ P ++
Sbjct: 187 RARAGAILSTSATVIADDPSLNVRWSELGEQVQAQYAQEDVRQPIRVIIDSQNRLTPAYQ 246
Query: 228 VLKGGGSCIFTAT-----DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINE 282
+ G I T D P E + V+ N ++DL ++ +L + IN
Sbjct: 247 LFHLPGKTILARTEEGDEDWP------ESVSQWVVPTRQNSQQIDLTELMRQLAEAGINH 300
Query: 283 LHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQK 341
+ +EAG L L+ VD L+LY +P L+G ++ ++ LP ++D+ I L +++
Sbjct: 301 IWVEAGAGLAGGLLDAQLVDSLILYQAPKLMGADSRSLMNLPTLTAMDQVIDLNITDVRM 360
Query: 342 IGPDIRILA 350
+ D++I A
Sbjct: 361 VDCDLKITA 369
>gi|170719753|ref|YP_001747441.1| riboflavin biosynthesis protein RibD [Pseudomonas putida W619]
gi|169757756|gb|ACA71072.1| riboflavin biosynthesis protein RibD [Pseudomonas putida W619]
Length = 376
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/365 (36%), Positives = 205/365 (56%), Gaps = 24/365 (6%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ I + PNPRVGCVIV++ ++ G+ G HAE+ AL A G
Sbjct: 13 MARALELARKGIYTTHPNPRVGCVIVRDGEVVGEGWHVRAGEPHAEVHALRQA---GERA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+ Y+TLEPCS+ G TPPC EAL+++G+ +V+ A+ DPNP V+G+G+ +L AGI V
Sbjct: 70 RGACAYVTLEPCSHHGRTPPCAEALVQAGVARVVAAMQDPNPQVAGQGLRRLAEAGIEVA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ +A +N GF RM+ G+P+VR K+A SLD +T++ + SQWIT +R+
Sbjct: 130 SGVLEAQARALNPGFLKRMEHGLPFVRAKLAMSLDGRTAMASGESQWITGPAARSAVQRL 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRID---PF 225
RA + +LT +VL DN R+ VR ++ S P R++ID LR+ PF
Sbjct: 190 RASASVVLTSAASVLADNARMTVRGAELGLDPDATALALSRTPLRVLIDGRLRLPLDAPF 249
Query: 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285
F + G + + TA + GHE++ LP + G+VDL A++ L R +N++ +
Sbjct: 250 F---QAGPALVVTAMGDDTR---YGQAGHELLSLPGSNGQVDLLALMQALAARGVNDILL 303
Query: 286 EAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
EAG L A G +DE L+++ +G P + + +LK E++ +G D
Sbjct: 304 EAGAGLVGAFAQLGLIDEYQLFVAGTFLGSQARPLLDWPLSKMSEAPRLKITEMRAVGDD 363
Query: 346 IRILA 350
R+ A
Sbjct: 364 WRVTA 368
>gi|437499076|ref|ZP_20773885.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
gi|435223999|gb|ELO05983.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 642046 4-7]
Length = 367
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 214/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV I+ GY + G HAE+ AL A A+
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGAK---A 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ +S+D +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR S + S+ QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPALR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G T R + + I +P + G +DL ++++LG+++IN + +EA
Sbjct: 244 IVQQPGETWIARTQ-EDSRAWPDSV--RTISVPAHNGHLDLVVLMMQLGRQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A + LP L + F EI+ +GPD+
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPDV 360
>gi|388547633|ref|ZP_10150895.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. M47T1]
gi|388274233|gb|EIK93833.1| riboflavin biosynthesis protein RibD [Pseudomonas sp. M47T1]
Length = 379
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 130/364 (35%), Positives = 206/364 (56%), Gaps = 21/364 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ A+ + + PNPRVGCVIV++ +++ G+ G HAE+ AL A G
Sbjct: 15 MARAIELARRGLYTTHPNPRVGCVIVRDGQVVGEGWHVRAGEGHAEVHALRQA---GELA 71
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +AL+ +G+ +V+ A+ DPNP V+G+G+ +L GI V
Sbjct: 72 RGATAYVTLEPCSHHGRTPPCADALVNAGLARVVAAMQDPNPEVAGRGLKRLADVGIEVL 131
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+++ EA +N GF RM++G+P+VR+K+A SLD +T++ + S+WIT +R+
Sbjct: 132 SGVLEGEARGLNPGFLKRMEQGVPFVRVKLAMSLDGRTAMASGESKWITGPAARSAVQRL 191
Query: 180 RARSCAILTGIGTVLKDNPRLNVR-----------SIKTSHQPYRIVIDSYLRIDPFFRV 228
RARS A+LT +VL D+ R+ VR ++ T P R++ID LR+
Sbjct: 192 RARSSAVLTSADSVLADDARMTVRAEELGLDPATTALATERPPLRVLIDGRLRVPLTAAF 251
Query: 229 LKGGGSCIFTAT--DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIE 286
+ G S + T T D R+ GHE++V+ G VDL ++ L R +E+ +E
Sbjct: 252 FQAGPSLVVTCTQGDADAYRQ----QGHELLVMNAVDGHVDLGHLLTLLAARGSSEILVE 307
Query: 287 AGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
AG L A G VDE L+++ +G + P + + +LK E++ +G D
Sbjct: 308 AGPTLAGAFARLGLVDEYQLFVAGQFLGSSARPLLDWPLARMSEAPRLKIIEMRAVGDDW 367
Query: 347 RILA 350
R++A
Sbjct: 368 RVIA 371
>gi|204927242|ref|ZP_03218444.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|452121321|ref|YP_007471569.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
gi|204323907|gb|EDZ09102.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|451910325|gb|AGF82131.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Javiana str. CFSAN001992]
Length = 367
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 213/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV I+ GY + G HAE+ AL A A+
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGAK---A 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ +S+D +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR S + S+ QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWTELDASTQASYPQENLRQPVRIVIDSQNRVTPAHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G T + D I +P + G +DL ++++LG+++IN + +EA
Sbjct: 244 IVQQPGETWIARTQ--EDSRAWPD-AVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A + LP L + F EI+ +GPD+
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLERLADAPQFTFSEIRHVGPDV 360
>gi|323144123|ref|ZP_08078762.1| riboflavin biosynthesis protein RibD [Succinatimonas hippei YIT
12066]
gi|322416100|gb|EFY06795.1| riboflavin biosynthesis protein RibD [Succinatimonas hippei YIT
12066]
Length = 366
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 148/368 (40%), Positives = 207/368 (56%), Gaps = 23/368 (6%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ +SPNP VGCVIV+ II GY G HAEI A+ +A G V
Sbjct: 1 MKRALKLAARGKFTTSPNPAVGCVIVRNGMIIGEGYHHKAGEPHAEIMAMRSA---GSSV 57
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC +AL+K+G+K+V+IA DPNP V+G+GV L AGI V
Sbjct: 58 AGATCYVTLEPCSHYGRTPPCAKALVKAGVKRVVIACGDPNPQVAGRGVKILKDAGIEVD 117
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL + +A ++N FF + + IP+V +KI SLD K +L + S+WITS++SR
Sbjct: 118 VGLYENKALKLNRAFFKSIVKNIPYVTVKIGMSLDAKIALSDGRSKWITSEKSRQTVQKM 177
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA S AI+TG GTV+ DNP LNVR I QP R+V+DS RI+P
Sbjct: 178 RAASDAIITGSGTVIADNPLLNVRYDELSAKVFEKYDINKEKQPLRVVLDSRQRINPDDY 237
Query: 228 VLKGGGSCIFTATDLPMK---RKILEDLGHEVIVLPNNL-GKVDLQAVIIELGKRKINEL 283
V+ G + L K +I E L E+ P + G++ + AV+ EL KR+ ++
Sbjct: 238 VMFSQGKVLLVRPSLDSKNISEQINEHL--EIFYAPCDFAGRICISAVLSELSKRQCRKV 295
Query: 284 HIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKI 342
+EAG L + + E DEL L+++P ++G A F SLD K I++
Sbjct: 296 LVEAGPTLVASFLQERLADELALFVAPKVLGVNAKTAFACDEVSSLDCLKPYKILTIKRS 355
Query: 343 GPDIRILA 350
G D + A
Sbjct: 356 GKDFFVRA 363
>gi|334340276|ref|YP_004545256.1| riboflavin biosynthesis protein RibD [Desulfotomaculum ruminis DSM
2154]
gi|334091630|gb|AEG59970.1| riboflavin biosynthesis protein RibD [Desulfotomaculum ruminis DSM
2154]
Length = 377
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/320 (41%), Positives = 194/320 (60%), Gaps = 9/320 (2%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ A+ +SPNP VG VIVKE ++I G+ GG HAE+ AL+ A Q D
Sbjct: 10 MQMALELAARARGRTSPNPLVGAVIVKEGQVIGKGFHAKAGGAHAEVVALMEAGEQARD- 68
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPC ++G T PCTEA+IK+GIK+V+ A+ DPNPLV+GKG+ L AG+ VK
Sbjct: 69 --ATLYVTLEPCCHYGRTGPCTEAVIKAGIKRVVAAMTDPNPLVAGKGLEVLKKAGVEVK 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G++++EA +N F + P+V +K A+SLD K + SQWIT K +R H
Sbjct: 127 AGVLEQEAMHLNEAFIKYITTKRPFVILKSATSLDGKIATAGGESQWITGKAAREQGHWL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIK-TSHQPYRIVIDSYLRIDPFFRVL---KGGGSC 235
R R AIL G+ T+L D+P L R + P RIV+DS R +VL +
Sbjct: 187 RDRVDAILVGVNTILADDPSLTTRLPEGRGKDPVRIVVDSLARTPTAAKVLLQESAAHTM 246
Query: 236 IFTATDLPMKRKI-LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
I T P++R+ L G EV+V+P +VDL ++ LG+++I ++ IE G +LN +
Sbjct: 247 IATTEAAPVERRASLMAAGAEVLVVPGPGPRVDLVKLMELLGEKQITQILIEGGGKLNGS 306
Query: 295 LILEGCVDELLLYISPILIG 314
+ G VD+++ +I+P +IG
Sbjct: 307 ALAAGIVDKVVWFIAPKIIG 326
>gi|59711307|ref|YP_204083.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino) uracil
reductase [Vibrio fischeri ES114]
gi|59479408|gb|AAW85195.1| fused diaminohydroxyphosphoribosylaminopyrimidine deaminase and
5-amino-6-(5-phosphoribosylamino) uracil reductase
[Vibrio fischeri ES114]
Length = 372
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 143/371 (38%), Positives = 217/371 (58%), Gaps = 34/371 (9%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+ AK I ++PNP VGCV+VK +II G G HAE+ AL A G +
Sbjct: 11 MQKAILLAKQGIYTTAPNPNVGCVLVKNGKIIGEGAHLKAGEPHAEVHALRQA---GKEA 67
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC E LIK+G+KKVI A+ DPNP V+G+G+A L AGI
Sbjct: 68 QGATAYVTLEPCSHYGRTPPCAEGLIKAGVKKVICAMVDPNPQVAGRGLAMLDEAGIETA 127
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL++ +A +N F +RM+ G P+V++K+A+SLD KT+L N SQWITSKE+R D +
Sbjct: 128 SGLLEADARALNPHFLTRMETGKPFVQLKMAASLDGKTALKNGVSQWITSKEARQDVQRY 187
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AIL+ TV+ D+ LNVR SI+ S+ QP R ++D + +
Sbjct: 188 RAQSGAILSTAKTVIDDDASLNVRWSDLPPSIQESYQQASIRQPMRFILDRQHSLTSDLK 247
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNL------GKVDLQAVIIELGKR-KI 280
+F A+D + I H + N++ G++DL+ V+ ++ + +
Sbjct: 248 --------LFQASDEVV--TISSQNTHPIGTSENHMQCRVDDGQLDLKEVVNKISRDFNV 297
Query: 281 NELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEI 339
N + +EAG L ++I + VDEL++Y++P L+G + ++ L ++ + I L +I
Sbjct: 298 NHIWVEAGATLAASMINDNLVDELIIYLAPKLMGADGRSIINLIGLETMSEAIDLDIKDI 357
Query: 340 QKIGPDIRILA 350
+ +G DIRI A
Sbjct: 358 RMVGKDIRITA 368
>gi|113461193|ref|YP_719262.1| diaminohydroxyphosphoribosylaminopyrimidine deaminase /
5-amino-6-(5-phosphoribosylamino)uracil reductase
[Haemophilus somnus 129PT]
gi|112823236|gb|ABI25325.1| 5-amino-6-(5-phosphoribosylamino)uracil reductase [Haemophilus
somnus 129PT]
Length = 376
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 138/362 (38%), Positives = 209/362 (57%), Gaps = 19/362 (5%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M +AL+ AK I ++PNP VGCV+VK I+ G+ G HAE+ AL +A G
Sbjct: 13 MQIALELAKKGIFTTTPNPAVGCVLVKNGEIVGRGFHFKAGQPHAEVMALRDA---GDRA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+FG TPPC + LI++GI+ VI+A+ DPNP V+GKG+A L +AGI
Sbjct: 70 KGATAYVTLEPCSHFGRTPPCAQGLIEAGIRNVIVAMKDPNPQVAGKGLAMLQAAGIESA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+Q++A +N GF +RM+ P+V +K+A SLD +T++ N S+WI+ +++R D
Sbjct: 130 VGLLQEKAELLNKGFLTRMRTQKPFVILKMAISLDGRTAMANGESKWISGEQARQDVQQE 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA+ AIL+ TVL D+P LN+R ++ QP RI++D + P +
Sbjct: 190 RAKVSAILSTAKTVLADDPLLNLRWEQFPSELQQNYKVEEVRQPVRIILDRLHLVTPRHK 249
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+ + S ++ D D + + P+N L+ ++IEL KR+IN L +EA
Sbjct: 250 LFQ-CQSPVWLVGDKERDMSAFPDYCQYIKLFPSNEHSY-LENLLIELAKRQINSLWLEA 307
Query: 288 GYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYS-LDKKIKLKFHEIQKIGPDI 346
G L A I E V+EL++Y++P L+G F PH L K + + +IG DI
Sbjct: 308 GETLAGAFIEENLVNELIIYMAPKLLGNEARGFCHLPHLKRLADAPKWQLLSLAQIGEDI 367
Query: 347 RI 348
++
Sbjct: 368 KL 369
>gi|384083202|ref|ZP_09994377.1| (S)-2-hydroxy-fatty-acid dehydrogenase [gamma proteobacterium
HIMB30]
Length = 374
Score = 239 bits (609), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 135/347 (38%), Positives = 208/347 (59%), Gaps = 16/347 (4%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++ NPRVG +++ I S G+ ++PG HAEI+A+ A + ST +TLEPCS
Sbjct: 25 STGENPRVGACFIRDGVIFSEGFHRAPGQPHAEIEAI--GATDTQRLKGSTCVVTLEPCS 82
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
+ G T PCT+ALI+ G+ +V++A+ DPNPLV+G+G+ +L AGI V GL +EA +N
Sbjct: 83 HHGKTGPCTDALIEVGVSRVVVAMVDPNPLVAGEGIRRLQEAGIDVVVGLYAREAERLNP 142
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
GF SRM R P++ +K A+S+D K ++ + SQWIT ++RND RAR AI+TGI T
Sbjct: 143 GFVSRMTRSRPYIWVKSAASVDGKIAMADGESQWITGSDARNDVQHLRARCQAIVTGIDT 202
Query: 193 VLKDNPRLNVR----------SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDL 242
VL DNPRL VR IK + QP R+++D++ R+ + + G ++ T
Sbjct: 203 VLMDNPRLTVRHQSAGIRLPEDIKVT-QPLRVILDTHGRLPETGALFEADGPILWI-TGS 260
Query: 243 PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVD 302
+L E V P ++DLQ V+ EL R+INE+ +EAG +L I E VD
Sbjct: 261 HFDHPLLHSGRVEQWVAPLKNHRIDLQVVVSELADRRINEVLVEAGPRLVGQCITEELVD 320
Query: 303 ELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+ +LY++P L+G+ A +++ + P D ++ EI+++G D+R+
Sbjct: 321 QGVLYLAPKLLGQAARSLYDIAPAQLADAP-EIFIEEIREVGKDLRL 366
>gi|416510505|ref|ZP_11737103.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|416520570|ref|ZP_11740282.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|416557252|ref|ZP_11759381.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
gi|363549174|gb|EHL33531.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB31]
gi|363554559|gb|EHL38794.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. ATCC BAA710]
gi|363578766|gb|EHL62568.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 42N]
Length = 367
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 213/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV I+ GY + G HAE+ AL A A+
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGAK---A 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ +S+D +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR S + S+ QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G T + D I +P + G +DL ++++LG+++IN + +EA
Sbjct: 244 IVQQPGETWIARTQ--EDSRTWPD-SVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A + LP L + F EI+ +GPD+
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPDV 360
>gi|213163224|ref|ZP_03348934.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Typhi str. E00-7866]
Length = 367
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 146/366 (39%), Positives = 214/366 (58%), Gaps = 32/366 (8%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV I+ GY G HAE+ AL A A+
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHHRAGEPHAEVHALRMAGAK---A 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ +S+D +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR S + S+ QP RIVIDS R+ P +R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAYR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGH------EVIVLPNNLGKVDLQAVIIELGKRKIN 281
+++ G T ED H I +P + G +DL ++++LG+++IN
Sbjct: 244 IVQQPGETWIARTQ--------ED-SHAWPDSVRTISVPAHNGHLDLVVLMMQLGRQQIN 294
Query: 282 ELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQ 340
+ +EAG L AL+ G VDEL++Y++P L+G +A + LP L + F EI+
Sbjct: 295 SIWVEAGPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIR 354
Query: 341 KIGPDI 346
+GPD+
Sbjct: 355 HVGPDV 360
>gi|198244553|ref|YP_002214370.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Dublin str. CT_02021853]
gi|205351727|ref|YP_002225528.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 287/91]
gi|207855897|ref|YP_002242548.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. P125109]
gi|375117851|ref|ZP_09763018.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|375122512|ref|ZP_09767676.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|378956197|ref|YP_005213684.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|421451220|ref|ZP_15900586.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|436676498|ref|ZP_20517681.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|436800945|ref|ZP_20524627.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|437329120|ref|ZP_20741210.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|437338549|ref|ZP_20743754.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|438144592|ref|ZP_20875586.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|445132377|ref|ZP_21382164.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|445144165|ref|ZP_21386914.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|445150259|ref|ZP_21389630.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|445244207|ref|ZP_21408034.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
gi|445329427|ref|ZP_21413485.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|197939069|gb|ACH76402.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205271508|emb|CAR36326.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|206707700|emb|CAR31984.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|326622118|gb|EGE28463.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|326626762|gb|EGE33105.1| Riboflavin biosynthesis protein ribD [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|357206808|gb|AET54854.1| riboflavin biosynthesis protein RibD [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|396063975|gb|EJI72363.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 58-6482]
gi|434939106|gb|ELL45980.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Pullorum str. ATCC 9120]
gi|434958564|gb|ELL52107.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS44]
gi|435008698|gb|ELL99511.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. SE30663]
gi|435190651|gb|ELN75233.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 17927]
gi|435195940|gb|ELN80296.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. CHS4]
gi|444847305|gb|ELX72455.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Dublin str. SL1438]
gi|444849065|gb|ELX74182.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Gallinarum str. 9184]
gi|444857008|gb|ELX82024.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Dublin str. HWS51]
gi|444879187|gb|ELY03295.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 18569]
gi|444890594|gb|ELY13913.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Enteritidis str. 436]
Length = 367
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 214/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV I+ GY + G HAE+ AL A A+
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGAK---A 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ +S+D +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR S + S+ QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G T R + + I +P + G +DL ++++LG+++IN + +EA
Sbjct: 244 IVQQPGETWIARTQED-SRAWPDSV--RTISVPAHNGHLDLVVLMMQLGRQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A + LP L + F EI+ +GPD+
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPDV 360
>gi|416526621|ref|ZP_11742526.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|416536169|ref|ZP_11748236.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|416552393|ref|ZP_11757109.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|416567959|ref|ZP_11764463.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
gi|363557673|gb|EHL41878.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. LQC 10]
gi|363564619|gb|EHL48666.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 29N]
gi|363565275|gb|EHL49311.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. SARB30]
gi|363578323|gb|EHL62137.1| bifunctional diaminohydroxyphosphoribosylaminopyrimidine
deaminase/5-amino-6-(5-phosphoribosylamino)uracil
reductase [Salmonella enterica subsp. enterica serovar
Montevideo str. 4441 H]
Length = 367
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 144/360 (40%), Positives = 213/360 (59%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIV I+ GY + G HAE+ AL A A+
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVNNGDIVGEGYHQRAGEPHAEVHALRMAGAK---A 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ A+ DPNP V+G+G+ +L AGI+V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIAVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA +N GF RM+ G P++++K+ +S+D +T++ + SQWITS ++R D
Sbjct: 124 HGLMMSEAEALNKGFLKRMRTGFPYLQLKLGASVDGRTAMASGESQWITSPQARRDVQRL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR S + S+ QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWAELDASTQASYPQENLRQPVRIVIDSQNRVTPAHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G T + D I +P + G +DL ++++LG+++IN + +EA
Sbjct: 244 IVQQPGETWIARTQ--EDSRTWPD-SVRTISVPAHNGHLDLVVLMMQLGRQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++Y++P L+G +A + LP L + F EI+ +GPD+
Sbjct: 301 GPGLAGALLQAGLVDELIVYVAPKLLGTQARGLCELPGLEKLADAPQFTFSEIRHVGPDV 360
>gi|37679045|ref|NP_933654.1| pyrimidine reductase [Vibrio vulnificus YJ016]
gi|37197787|dbj|BAC93625.1| pyrimidine reductase [Vibrio vulnificus YJ016]
Length = 368
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 132/354 (37%), Positives = 203/354 (57%), Gaps = 33/354 (9%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCS 72
++PNP VGCV++++ I+ G+ G HAE+ A+ AA + +T Y+TLEPCS
Sbjct: 25 TTAPNPNVGCVLLRDGEIVGEGFHFRAGEPHAEVHAMRMAADK---AKGATAYVTLEPCS 81
Query: 73 YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINI 132
++G TPPC E LIK+G+ +V+ A+ DPNP V+G+G A L AGI V GL+Q EA +N
Sbjct: 82 HYGRTPPCAEGLIKAGVSRVVCAMEDPNPQVAGRGFAMLREAGIEVSVGLLQAEAEALNP 141
Query: 133 GFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGT 192
F RM+ G+P+V++K+A+SLD +T+L N SQWITS ++R D +RA+S AIL+ T
Sbjct: 142 AFIKRMKTGMPFVQLKMAASLDGQTALANGKSQWITSPQARRDVQRFRAQSGAILSTSKT 201
Query: 193 VLKDNPRLNVR------SIKTS------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT 240
VL DN LNVR S++ + QP R+V+D + P ++ + G +
Sbjct: 202 VLADNASLNVRWSELPSSVQRALPQEQLRQPTRVVLDRQAELSPELKLYQTEGERLIVGP 261
Query: 241 --DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGK-RKINELHIEAGYQLNTALIL 297
DLP + G+++L + +L + + IN L +EAG L LI
Sbjct: 262 KGDLPAPL--------------DEHGQINLPQLFTQLSQTQSINHLWVEAGATLAAGLIK 307
Query: 298 EGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VDEL++Y++P L+G + + ++ I L +++ +GPDIRI+A
Sbjct: 308 HQLVDELIVYLAPKLMGSDGRGLMGALGLQAMSHVIDLDIKDVRMVGPDIRIIA 361
>gi|435853632|ref|YP_007314951.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1'-reductase [Halobacteroides halobius DSM 5150]
gi|433670043|gb|AGB40858.1| 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine
1'-reductase [Halobacteroides halobius DSM 5150]
Length = 363
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 147/357 (41%), Positives = 211/357 (59%), Gaps = 12/357 (3%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ AK + +SPNP VG +IVKE II GY GG HAE++AL +A + V
Sbjct: 7 MKQALRLAKQAQGRTSPNPLVGAIIVKEGEIIGQGYHHYAGGAHAEVNALEDAKEE---V 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST+Y+TLEPC+++G TPPCTE +I++GIK+V+IA+ DPNP V+G+GV +L AG+ V
Sbjct: 64 VGSTMYVTLEPCTHYGKTPPCTETIIEAGIKRVVIAMKDPNPKVAGQGVERLRRAGVEVD 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GL+ EA E+N F + P+V +K A +LD K + S+WIT +SR H
Sbjct: 124 VGLLAVEAKELNEIFIKYITTKRPFVILKNAVTLDGKIATKTGDSKWITGTKSREFVHKL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLK--GGGSCIF 237
R + AIL GIGTVL DNPRL R + P RI++DS LRI +V+K I
Sbjct: 184 RDQVDAILVGIGTVLSDNPRLTTRLSQGGQDPIRIILDSKLRISSEAKVIKQESKAKTIV 243
Query: 238 TATDLPM--KRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
TD K++ LE G +V+ + N VDL+ ++ ELGK++I L +E G Q+N +
Sbjct: 244 ATTDQASLEKKEELEKNGVKVVKVGNKA--VDLELLLEELGKQEITSLLVEGGSQVNASF 301
Query: 296 ILEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
VD+L +I+P +IG EA ++ T + +KL I+++G DI ++
Sbjct: 302 WEANLVDKLYYFIAPKIIGGSEAISVVTGAGVEKVKDGVKLDIKTIKEVGDDILMIG 358
>gi|311030745|ref|ZP_07708835.1| riboflavin biosynthesis protein RibD [Bacillus sp. m3-13]
Length = 367
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 140/358 (39%), Positives = 213/358 (59%), Gaps = 13/358 (3%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+ AK + +SPNP VG V+VK I+ G G HAE++A+ A G D
Sbjct: 7 MKFAIDLAKRATGQTSPNPVVGSVVVKNGEIVGFGAHLRAGEAHAEVNAIQMA---GVDK 63
Query: 60 YN-STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
N STVY+TLEPCS+FG TPPC++ LI+S + +V+IA DPNPLV+G+G+ +L AGI V
Sbjct: 64 ANGSTVYVTLEPCSHFGKTPPCSDLLIQSQVSRVVIASTDPNPLVAGRGIEKLRKAGIEV 123
Query: 119 KQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI 178
+ G+ ++EA +N FF ++ G P+V +K A+SLD KT+ + N S+WIT +SR D H
Sbjct: 124 ELGVCEEEALALNQVFFHHIKTGKPFVTLKTAASLDGKTATHRNESKWITGPDSRLDVHQ 183
Query: 179 WRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFT 238
+R + AIL G+GTVL D+P L+ R P RI++DS+LR +VL G + +
Sbjct: 184 YRHQHDAILVGVGTVLADDPSLDTRLPNGGKNPIRIILDSHLRTPLDSKVLTDGKAPTWI 243
Query: 239 AT----DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
T DL + G V LP + KV++ ++ LG+ +I L +E G +N +
Sbjct: 244 VTGSKPDLEKMAFLEGQEGVRVFTLP--MEKVEVNELLSLLGEEEITSLFVEGGATVNGS 301
Query: 295 LILEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
+ E + +L+ YI+P LIG A + ++D+ ++ + E+ KIGPD++I++
Sbjct: 302 FLKEKAIQQLITYIAPKLIGGKAAPTLVGGEGFATMDEVMEFEIKEVTKIGPDLKIVS 359
>gi|419802262|ref|ZP_14327458.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae
HK262]
gi|419845044|ref|ZP_14368331.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae
HK2019]
gi|385191024|gb|EIF38451.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae
HK262]
gi|386416970|gb|EIJ31462.1| riboflavin biosynthesis protein RibD [Haemophilus parainfluenzae
HK2019]
Length = 376
Score = 238 bits (607), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 134/362 (37%), Positives = 207/362 (57%), Gaps = 22/362 (6%)
Query: 1 MTLALQ-QAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL+ AK ++PNP VGCV+VK I+ G+ G HAE AL +A G
Sbjct: 13 MQLALELAAKGQYTTTPNPSVGCVLVKNGEIVGKGFHLKAGQPHAERMALADA---GEKA 69
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS++G TPPC LI++G+ +VI A+ DPNP V+GKG+ L AGI
Sbjct: 70 KGATAYVTLEPCSHYGRTPPCALGLIEAGVSRVIAAMADPNPQVAGKGLKMLADAGIPSA 129
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
L+ ++A +N GF RM+ G P+V++K+A SLD +T++ + S+WIT +R D
Sbjct: 130 VNLLNEQAEALNKGFLKRMRTGKPYVQLKLAMSLDGRTAMASGESKWITGDAARADVQKM 189
Query: 180 RARSCAILTGIGTVLKDNPRLNVR------------SIKTSHQPYRIVIDSYLRIDPFFR 227
RA++ A+L+ TVL D+P LNVR + +T QP R+++DS R+ P +
Sbjct: 190 RAKASALLSTSATVLADDPSLNVRWNQFPDDLKAEYAEETVRQPIRVILDSKNRVQPRHQ 249
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+ S ++ +P + D E I+LP N G ++ ELGKR++N + +EA
Sbjct: 250 LFH-THSPVWLVGSIPRDMSVFPDFC-EQILLPENYG---FDMLMTELGKRQVNSIWVEA 304
Query: 288 GYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L +LI + +DEL++Y++P L+G+ A + LP L + E ++I D+
Sbjct: 305 GANLAGSLIEQHAIDELIIYVAPKLLGDKARGLCQLPHLEKLADAPLWQLQECERIEDDL 364
Query: 347 RI 348
++
Sbjct: 365 KL 366
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.320 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,449,527,163
Number of Sequences: 23463169
Number of extensions: 222284712
Number of successful extensions: 548880
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4061
Number of HSP's successfully gapped in prelim test: 4704
Number of HSP's that attempted gapping in prelim test: 531822
Number of HSP's gapped (non-prelim): 9362
length of query: 352
length of database: 8,064,228,071
effective HSP length: 143
effective length of query: 209
effective length of database: 9,003,962,200
effective search space: 1881828099800
effective search space used: 1881828099800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 77 (34.3 bits)