BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14502
(352 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2O7P|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
pdb|2O7P|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With The Oxidised Nadp+ Cofactor In The Active
Site Of The Reductase Domain
Length = 380
Score = 257 bits (656), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 19/348 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ GY + G HAE+ AL A G +T Y+TLEPC
Sbjct: 24 FTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXA---GEKAKGATAYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ + DPNP V+G+G+ +L AGI V GL EA ++N
Sbjct: 81 SHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGIDVSHGLXXSEAEQLN 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF R + G P++++K+ +SLD +T+ + SQWITS ++R D + RA+S AILT
Sbjct: 141 KGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQLLRAQSHAILTSSA 200
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P L VR + QP RIVIDS R+ P R+++ G F
Sbjct: 201 TVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFAR 260
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
T R+ E + +++P + G +DL + +LGK++IN + +EAG L AL+ G
Sbjct: 261 TQ-EDSREWPETV--RTLLIPEHKGHLDLVVLXXQLGKQQINSIWVEAGPTLAGALLQAG 317
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 318 LVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 365
>pdb|2G6V|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2G6V|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli
pdb|2OBC|A Chain A, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
pdb|2OBC|B Chain B, The Crystal Structure Of Ribd From Escherichia Coli In
Complex With A Substrate Analogue, Ribose 5-Phosphate
(Beta Form), Bound To The Active Site Of The Reductase
Domain
Length = 402
Score = 256 bits (655), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 142/348 (40%), Positives = 206/348 (59%), Gaps = 19/348 (5%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+ PNP VGCVIVK+ I+ GY + G HAE+ AL A G +T Y+TLEPC
Sbjct: 46 FTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRXA---GEKAKGATAYVTLEPC 102
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
S+ G TPPC +ALI +G+ +V+ + DPNP V+G+G+ +L AGI V GL EA ++N
Sbjct: 103 SHHGRTPPCCDALIAAGVARVVASXQDPNPQVAGRGLYRLQQAGIDVSHGLXXSEAEQLN 162
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
GF R + G P++++K+ +SLD +T+ + SQWITS ++R D + RA+S AILT
Sbjct: 163 KGFLKRXRTGFPYIQLKLGASLDGRTAXASGESQWITSPQARRDVQLLRAQSHAILTSSA 222
Query: 192 TVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
TVL D+P L VR + QP RIVIDS R+ P R+++ G F
Sbjct: 223 TVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHRIVQQPGETWFAR 282
Query: 240 TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEG 299
T R+ E + +++P + G +DL + +LGK++IN + +EAG L AL+ G
Sbjct: 283 TQ-EDSREWPETV--RTLLIPEHKGHLDLVVLXXQLGKQQINSIWVEAGPTLAGALLQAG 339
Query: 300 CVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 340 LVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 387
>pdb|2B3Z|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2B3Z|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|A Chain A, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|B Chain B, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|C Chain C, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|2D5N|D Chain D, Crystal Structure Of A Bifunctional Deaminase And
Reductase Involved In Riboflavin Biosynthesis
pdb|3EX8|A Chain A, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|B Chain B, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|C Chain C, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|3EX8|D Chain D, Complex Structure Of Bacillus Subtilis Ribg Reduction
Mechanism In Riboflavin Biosynthesis
pdb|4G3M|A Chain A, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|B Chain B, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|C Chain C, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
pdb|4G3M|D Chain D, Complex Structure Of Bacillus Subtilis Ribg: The
Deamination Process In Riboflavin Biosynthesis
Length = 373
Score = 224 bits (570), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 129/359 (35%), Positives = 205/359 (57%), Gaps = 15/359 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDA--LLNAAAQGY 57
M LAL AK + NP VG V+VK+ +I+ G G HAE+ A + A A+G
Sbjct: 18 MKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGA 77
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
D+Y +TLEPCS++G TPPC E +I SGIK+V +A+ DPNPLV+G+G++ + AGI
Sbjct: 78 DIY-----VTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIE 132
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V++G++ +A +N F M+ G+P+V +K A+SLD K + S+WITS+ +R D+
Sbjct: 133 VREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 192
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVL--KGGGSC 235
+R +IL G+GTV DNP L R + QP R+++D+ L I +V+ + +
Sbjct: 193 QYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDTVLSIPEDAKVICDQIAPTW 252
Query: 236 IF-TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
IF TA K+K L G + L ++ + V+ L + I +++E G ++ +
Sbjct: 253 IFTTARADEEKKKRLSAFGVNIFTLETE--RIQIPDVLKILAEEGIMSVYVEGGSAVHGS 310
Query: 295 LILEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+ EGC E++ Y +P LIG A ++ + S+ L+F +I +IG DI++ A+
Sbjct: 311 FVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAK 369
>pdb|2HXV|A Chain A, Crystal Structure Of A
Diaminohydroxyphosphoribosylaminopyrimidine Deaminase
5-Amino-6-(5-Phosphoribosylamino)uracil Reductase
(Tm1828) From Thermotoga Maritima At 1.80 A Resolution
Length = 360
Score = 177 bits (450), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 117/334 (35%), Positives = 183/334 (54%), Gaps = 23/334 (6%)
Query: 4 ALQQAKLSINS-SPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNS 62
A++ AK + +PNP VG V+VK+ RII+ G+ GG HAE A+ +A +G D+ +
Sbjct: 21 AIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERXAIESARKKGEDLRGA 80
Query: 63 TVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGL 122
T+ +TLEPC + G TPPCT+ +I+SGIK V+I DPNP VSG GV + + GI V +G+
Sbjct: 81 TLIVTLEPCDHHGKTPPCTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEVIEGV 139
Query: 123 MQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR 182
+++E ++ F + + + P+V +K AS+LD K + + S+WIT K R H R
Sbjct: 140 LEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIADHRGDSKWITDK-LRFKVHEXRNI 198
Query: 183 SCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRID-PFFRVLKGGGSCI-FTAT 240
A+L G GTVLKDNP+L R +K P R+++D + FRV + I FT +
Sbjct: 199 YSAVLVGAGTVLKDNPQLTCR-LKEGRNPVRVILDRKGVLSGKVFRVFEENARVIVFTES 257
Query: 241 DL----PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINEL--HIEAGYQLNTA 294
+ P K L D E I+ NL + D+ +V++E G + +E H + + +
Sbjct: 258 EEAEYPPHVEKALSDCSVESIL--RNLYERDIDSVLVEGGSKVFSEFLDHADVVFGFYST 315
Query: 295 LILEGCVDELLLYISPILIGEAYNMFTLPPHYSL 328
I +D Y+S + ++PP + +
Sbjct: 316 KIFGKGLDVFSGYLSDV---------SVPPKFKV 340
>pdb|2AZN|A Chain A, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|B Chain B, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|C Chain C, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|D Chain D, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|E Chain E, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
pdb|2AZN|F Chain F, X-Ray Structure Of
2,5-Diamino-6-Ribosylamino-4(3h)-Pyrimidinone 5-
Phosphate Reductase
Length = 219
Score = 104 bits (259), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 106/211 (50%), Gaps = 10/211 (4%)
Query: 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNV 202
P++ + +LD K + NN S+ I+ +E H RA I GIGTVLKD+PRL V
Sbjct: 4 PYIISNVGXTLDGKLATINNDSR-ISCEEDLIRVHKIRANVDGIXVGIGTVLKDDPRLTV 62
Query: 203 RSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT-----DLPMKRKILEDLGHEVI 257
IK+ P RIV+DS LR+ RVL I T + K KILED G EV+
Sbjct: 63 HKIKSDRNPVRIVVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDXGVEVV 122
Query: 258 VLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIG--E 315
GKVDL+ + L + I + +E G LN EG VDE+ +YI+P + G E
Sbjct: 123 KCGR--GKVDLKKLXDILYDKGIKSILLEGGGTLNWGXFKEGLVDEVSVYIAPKIFGGKE 180
Query: 316 AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
A ++D+ +KL+ ++G I
Sbjct: 181 APTYVDGEGFKTVDECVKLELKNFYRLGEGI 211
>pdb|1Z3A|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
pdb|1Z3A|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Escherichia Coli
Length = 168
Score = 58.2 bits (139), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAA--A 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 13 MRHALTLAKRAWDEREVP-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 71
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A+I S I +V+ D +G + L
Sbjct: 72 QNYRLIDATLYVTLEPCVM------CAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHP 125
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLD 154
G + + +G++ E + FF RM+R + K SS D
Sbjct: 126 GMNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 168
>pdb|3OCQ|A Chain A, Crystal Structure Of Trna-Specific Adenosine Deaminase
From Salmonella Enterica
Length = 183
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAA-- 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 23 MRHALTLAKRAWDEREVP-VGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVL 81
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A++ S I +V+ D +G + L
Sbjct: 82 QNYRLLDTTLYVTLEPCVM------CAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHP 135
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQR 140
G + + +G+++ E + FF RM+R
Sbjct: 136 GMNHRVEIIEGVLRDECATLLSDFF-RMRR 164
>pdb|1VQ2|A Chain A, Crystal Structure Of T4-Bacteriophage Deoxycytidylate
Deaminase, Mutant R115e
Length = 193
Score = 48.1 bits (113), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 23 VIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTE 82
V+ KE R ++ S HAE++A+L AA G + +T+Y+TL PC P C +
Sbjct: 85 VLAKEHRSAHSEWS-SKNEIHAELNAILFAAENGSSIEGATMYVTLSPC------PDCAK 137
Query: 83 ALIKSGIKKVI 93
A+ +SGIKK++
Sbjct: 138 AIAQSGIKKLV 148
>pdb|2HVV|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVV|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|A Chain A, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|B Chain B, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
pdb|2HVW|C Chain C, Crystal Structure Of Dcmp Deaminase From Streptococcus
Mutans
Length = 184
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 25/92 (27%)
Query: 20 VGCVIVKEKRIISCGYTKSPGGN-------------------HAEIDALLNAAAQGYDVY 60
VG V+VK RII+ GY HAE++AL+ A +G
Sbjct: 63 VGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISAN 122
Query: 61 NSTVYITLEPCSYFGYTPPCTEALIKSGIKKV 92
N+ +Y+T PC CT+AL+++G+KK+
Sbjct: 123 NTEIYVTHFPC------INCTKALLQAGVKKI 148
>pdb|2NX8|A Chain A, The Crystal Structure Of The Trna-Specific Adenosine
Deaminase From Streptococcus Pyogenes
Length = 179
Score = 44.7 bits (104), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL--LNAAA 54
M AL++++ S+ + P +GCVIVK+ II G+ N HAE+ A+ NA
Sbjct: 20 MQEALKESEKSLQKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 78
Query: 55 QGYDVYNSTVYITLEPC 71
+ + ++T+++T+EPC
Sbjct: 79 GNWRLLDTTLFVTIEPC 95
>pdb|1WWR|A Chain A, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|B Chain B, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|C Chain C, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
pdb|1WWR|D Chain D, Crystal Structure Of Trna Adenosine Deaminase Tada From
Aquifex Aeolicus
Length = 171
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYT-----KSPGGNHAEIDALLNAAAQ 55
+ +AL++AK + P VG +IVKE IIS + K P HAE+ A+ A +
Sbjct: 27 LKVALREAKRAFEKGEVP-VGAIIVKEGEIISKAHNSVEELKDPTA-HAEMLAIKEACRR 84
Query: 56 GYDVY--NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIND 98
Y +Y+TLEPC C+ AL+ S I+KVI + D
Sbjct: 85 LNTKYLEGCELYVTLEPCIM------CSYALVLSRIEKVIFSALD 123
>pdb|2B3J|A Chain A, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|B Chain B, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|C Chain C, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
pdb|2B3J|D Chain D, Crystal Structure Of Staphylococcus Aureus Trna Adenosine
Deaminase, Tada, In Complex With Rna
Length = 159
Score = 43.1 bits (100), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGY----TKSPGGNHAEIDALLNAAA-- 54
MTLA+++AK + P +G +I K+ +I+ + T HAE A+ AA
Sbjct: 11 MTLAIEEAKKAAQLGEVP-IGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVL 69
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
+ + T+Y+TLEPC C ++ S I +V+ +DP SG + L +
Sbjct: 70 GSWRLEGCTLYVTLEPCVM------CAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQS 123
Query: 115 GIS----VKQGLMQKEAYEINIGFFSRMQ 139
+ V +G++++ + FF ++
Sbjct: 124 NFNHRAIVDKGVLKEACSTLLTTFFKNLR 152
>pdb|2W4L|A Chain A, Human Dcmp Deaminase
pdb|2W4L|B Chain B, Human Dcmp Deaminase
pdb|2W4L|C Chain C, Human Dcmp Deaminase
pdb|2W4L|D Chain D, Human Dcmp Deaminase
pdb|2W4L|E Chain E, Human Dcmp Deaminase
pdb|2W4L|F Chain F, Human Dcmp Deaminase
Length = 178
Score = 42.4 bits (98), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 53/118 (44%), Gaps = 34/118 (28%)
Query: 1 MTLALQQAKLSINSSPNPRVG-CVIVKEKRIISCGYTKSPGG------------------ 41
M +A A+ S PN +VG C++ E +I+ GY P G
Sbjct: 17 MAVAFLSAQRS--KDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDT 74
Query: 42 -----NHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVII 94
HAE++A++N DV ++Y+ L PC+ C + +I++GIK+VI
Sbjct: 75 KYPYVCHAELNAIMNKNLT--DVKGCSMYVALFPCN------ECAKLIIQAGIKEVIF 124
>pdb|2A8N|A Chain A, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
pdb|2A8N|B Chain B, Biochemical And Structural Studies Of A-To-I Editing By
Trna:a34 Deaminases At The Wobble Position Of Transfer
Rna
Length = 144
Score = 33.1 bits (74), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 38/141 (26%), Positives = 64/141 (45%), Gaps = 19/141 (13%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL-LNAAAQ 55
M LAL +A+ + P +G V+V + R+I+ ++ N HAEI + + A
Sbjct: 8 MELALVEARSAGERDEVP-IGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEAL 66
Query: 56 GYD-VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
G + + + +Y+TLEPC+ C A+ + I+++ DP GV + S
Sbjct: 67 GQERLPGADLYVTLEPCTM------CAAAISFARIRRLYYGAQDPKGGAVESGV-RFFSQ 119
Query: 115 -----GISVKQGLMQKEAYEI 130
V GL + E+ EI
Sbjct: 120 PTCHHAPDVYSGLAESESAEI 140
>pdb|2GD9|A Chain A, Crystal Structure Of A Putative Dihydrofolate Reductase
(Bsu40760, Yyap) From Bacillus Subtilis At 2.30 A
Resolution
pdb|2GD9|B Chain B, Crystal Structure Of A Putative Dihydrofolate Reductase
(Bsu40760, Yyap) From Bacillus Subtilis At 2.30 A
Resolution
Length = 189
Score = 31.6 bits (70), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 9/72 (12%)
Query: 258 VLPNNLGKVDLQAVII------ELGKRKIN---ELHIEAGYQLNTALILEGCVDELLLYI 308
V ++D QA+ I E+ K K N ++ + G L T I G VDE L I
Sbjct: 88 VFSRTQNEIDNQAIFINDNILEEVNKLKKNPGKDIWLYGGASLITTFINLGLVDEFRLSI 147
Query: 309 SPILIGEAYNMF 320
P+++GE +F
Sbjct: 148 HPVVLGEGKPLF 159
>pdb|2P4G|A Chain A, Crystal Structure Of A Pyrimidine Reductase-Like Protein
(Dip1392) From Corynebacterium Diphtheriae Nctc At 2.30
A Resolution
Length = 270
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 249 LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYI 308
L D+G EVIV P + L+ L R++ ++ IE G + + G VD L L I
Sbjct: 159 LIDVGVEVIVAPTSTNP--LKIAFDALHARRLKKISIEGGPSVYRQALSLGIVDRLHLTI 216
Query: 309 SPILI 313
+P +I
Sbjct: 217 APNII 221
>pdb|1XTZ|A Chain A, Crystal Structure Of The S. Cerevisiae
D-Ribose-5-Phosphate Isomerase: Comparison With The
Archeal And Bacterial Enzymes
Length = 264
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 28/62 (45%)
Query: 214 IVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVII 273
I D +D +++KGGG+C+F + K + P +LGK Q V I
Sbjct: 104 IAFDGADEVDENLQLIKGGGACLFQEKLVSTSAKTFIVVADSRKKSPKHLGKNWRQGVPI 163
Query: 274 EL 275
E+
Sbjct: 164 EI 165
>pdb|2FQH|A Chain A, Nmr Structure Of Hypothetical Protein Ta0938 From
Termoplasma Acidophilum
Length = 109
Score = 29.3 bits (64), Expect = 3.8, Method: Composition-based stats.
Identities = 11/33 (33%), Positives = 19/33 (57%)
Query: 276 GKRKINELHIEAGYQLNTALILEGCVDELLLYI 308
+ ++ELHI+ YQL ++L+ D L Y+
Sbjct: 62 ARHNVDELHIDGNYQLGRNVLLKNGEDRLRFYV 94
>pdb|4E0B|A Chain A, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|B Chain B, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|C Chain C, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
pdb|4E0B|D Chain D, 2.17 Angstrom Resolution Crystal Structure Of Malate
Dehydrogenase From Vibrio Vulnificus Cmcp6
Length = 313
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
Query: 95 AINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWV 145
A DP P + G V LISAG++ K G + + + +N G + I V
Sbjct: 62 AGEDPTPALEGADVV-LISAGVARKPGXDRADLFNVNAGIVKSLAERIAVV 111
>pdb|1O9H|A Chain A, Rrna Methyltransferase Avira From Streptomyces
Viridochromogenes At 2.4a
Length = 250
Score = 28.9 bits (63), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 69 EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPL-VSGKGVAQLISAGISVKQGLMQKEA 127
+PC GY L + +++VI + DP PL ++ K +A L AG++ ++ L ++E
Sbjct: 57 DPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARE-LERREQ 115
Query: 128 YE 129
E
Sbjct: 116 SE 117
>pdb|1O9G|A Chain A, Rrna Methyltransferase Avira From Streptomyces
Viridochromogenes At 1.5a
Length = 250
Score = 28.5 bits (62), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 66 ITL-EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPL-VSGKGVAQLISAGISVKQGLM 123
+TL +PC GY L + +++VI + DP PL ++ K +A L AG++ ++ L
Sbjct: 53 VTLWDPCCGSGYLLTVLGLLHRRSLRQVIASDVDPAPLELAAKNLALLSPAGLTARE-LE 111
Query: 124 QKEAYE 129
++E E
Sbjct: 112 RREQSE 117
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,240,261
Number of Sequences: 62578
Number of extensions: 416048
Number of successful extensions: 1043
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1011
Number of HSP's gapped (non-prelim): 27
length of query: 352
length of database: 14,973,337
effective HSP length: 100
effective length of query: 252
effective length of database: 8,715,537
effective search space: 2196315324
effective search space used: 2196315324
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)