BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14502
(352 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P25539|RIBD_ECOLI Riboflavin biosynthesis protein RibD OS=Escherichia coli (strain
K12) GN=ribD PE=1 SV=1
Length = 367
Score = 275 bits (702), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 148/360 (41%), Positives = 218/360 (60%), Gaps = 20/360 (5%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M AL+ A+ + PNP VGCVIVK+ I+ GY + G HAE+ AL A G
Sbjct: 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPCS+ G TPPC +ALI +G+ +V+ ++ DPNP V+G+G+ +L AGI V
Sbjct: 64 KGATAYVTLEPCSHHGRTPPCCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVS 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
GLM EA ++N GF RM+ G P++++K+ +SLD +T++ + SQWITS ++R D +
Sbjct: 124 HGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAMASGESQWITSPQARRDVQLL 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSH------------QPYRIVIDSYLRIDPFFR 227
RA+S AILT TVL D+P L VR + QP RIVIDS R+ P R
Sbjct: 184 RAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 243
Query: 228 VLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287
+++ G F T R+ E + +++P + G +DL ++++LGK++IN + +EA
Sbjct: 244 IVQQPGETWFARTQ-EDSREWPETV--RTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEA 300
Query: 288 GYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G L AL+ G VDEL++YI+P L+G +A + TLP L + KF EI+ +GPD+
Sbjct: 301 GPTLAGALLQAGLVDELIVYIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDV 360
>sp|O66534|RIBD_AQUAE Riboflavin biosynthesis protein RibD OS=Aquifex aeolicus (strain
VF5) GN=ribD PE=3 SV=1
Length = 356
Score = 244 bits (622), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 135/351 (38%), Positives = 217/351 (61%), Gaps = 10/351 (2%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M LAL AK + PNP VG V+VKE +I+ GY + G HAE+ AL A G
Sbjct: 10 MKLALSLAKKRKGYTHPNPTVGAVVVKEGKIVGLGYHEKAGKPHAEVMALGQA---GEKA 66
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+TLEPC++FG TPPCT+A+I+SGIK+V++A DPNPL+SGKGV +L +AGI V
Sbjct: 67 KGATLYVTLEPCTHFGRTPPCTDAIIRSGIKRVVVATLDPNPLMSGKGVEKLRNAGIEVD 126
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ ++EA E+N FF+ + + P++ +K A +LD K + SS+WITSKESR +HI
Sbjct: 127 VGVCEEEARELNEDFFTYITQERPYITLKWAQTLDGKLATLTGSSKWITSKESRKVAHIL 186
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGS-CIFT 238
R + A+L G+ TV+KD+P L VR + T QP RI++D L + +VL + I
Sbjct: 187 RREATAVLVGVNTVIKDDPHLTVRFVPTEKQPVRIILDPELEVPLSAKVLNTEEAPTIVI 246
Query: 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298
K + L++ G +V++L +L+ ++ +L + +I L +E G + T+ + E
Sbjct: 247 TKKENEKAEKLKEKGVQVLILKG----FNLKNILKKLKELEIMHLMVEGGPRTLTSFLKE 302
Query: 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRIL 349
G D ++++I+P ++GE ++ L S+++ +K++ +++ +G D+ I
Sbjct: 303 GFFDRIVVFIAPKIMGEGLSIGDLGIR-SIEESLKVRKKKVENLGEDLVIF 352
>sp|P44326|RIBD_HAEIN Riboflavin biosynthesis protein RibD OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=ribD PE=3
SV=1
Length = 372
Score = 241 bits (615), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 137/354 (38%), Positives = 210/354 (59%), Gaps = 21/354 (5%)
Query: 8 AKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT 67
AK ++PNP VGCV+VK I+ G+ G HAE AL A G + +T Y+T
Sbjct: 20 AKGQYTTTPNPSVGCVLVKNGEIVGEGFHFKAGQPHAERVALAQA---GENAKGATAYVT 76
Query: 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEA 127
LEPC+++G TPPC LI++G+ KVI A+ DPNP V+GKG+ L AGI L+ +A
Sbjct: 77 LEPCAHYGRTPPCALGLIEAGVVKVIAAMQDPNPQVAGKGLKMLSDAGIESTVNLLNDQA 136
Query: 128 YEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAIL 187
+IN GF RM++G+P+V++K+A SLD +T++ + S+WIT ++R+D RA+S A+L
Sbjct: 137 EKINKGFLKRMRQGMPFVQLKLAMSLDGRTAMASGESKWITGPDARSDVQKMRAKSSALL 196
Query: 188 TGIGTVLKDNPRLNVR------SIKTSH------QPYRIVIDSYLRIDPFFRVLKGGGSC 235
+ TV+ D+P LNVR ++KT + QP R+++DS RI P ++ S
Sbjct: 197 STSTTVIADDPSLNVRWDEFPENLKTEYKKEWLRQPVRVILDSQHRIQPTHKLFL-THSP 255
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTAL 295
++ + P D ++I NL L+ ++ ELGKR+IN L +EAG L+ +L
Sbjct: 256 VWLVSSEPRDLTGFPDFCEQIIFPKENL----LKELMRELGKRQINTLWVEAGANLSGSL 311
Query: 296 ILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
I VDEL++YI+P L+G+ A + LP L + +E+++IG DI++
Sbjct: 312 IDAKLVDELIIYIAPKLLGDNARGLCQLPNLTKLADAPLWQLNELEQIGDDIKL 365
>sp|P70814|RIBD_BACAM Riboflavin biosynthesis protein RibD OS=Bacillus amyloliquefaciens
GN=ribD PE=3 SV=1
Length = 371
Score = 241 bits (614), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 135/345 (39%), Positives = 204/345 (59%), Gaps = 14/345 (4%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDA--LLNAAAQGYDVYNSTVYITLEP 70
+ PNP VG V+VK+++I+ G G HAE+ A + + A+G D+Y +TLEP
Sbjct: 19 QTQPNPLVGAVVVKKRQIVGMGAHLQYGEAHAEVHAINMAGSLAKGADLY-----VTLEP 73
Query: 71 CSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEI 130
CS++G TPPC E ++KSGIK+V IA+ DPNPLV+GKG+ L AGI VK GL++++A E+
Sbjct: 74 CSHYGKTPPCAELIMKSGIKRVFIAVEDPNPLVAGKGITMLEEAGIEVKTGLLRQQAEEL 133
Query: 131 NIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGI 190
N F M+ G+P+V +K A+SLD KT+ S+WITS+ +R D+ +R IL G
Sbjct: 134 NKMFLHFMRTGLPYVTLKAAASLDGKTATETGDSKWITSEAARLDAQQYRKSHQRILVGA 193
Query: 191 GTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGG--SCIFTATDLPMKRKI 248
GTV DNP L R QP R+++D+ L + VL G + IFTA +++K
Sbjct: 194 GTVKADNPSLTCRLPDAVKQPVRVILDTKLTVPETANVLTDGAAPTWIFTAAGSDVRKKD 253
Query: 249 -LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLY 307
L LG +V L + ++ + V+ L + I +++E G ++ + + GC DEL Y
Sbjct: 254 RLTALGIKVFTLETD--RIHIPEVLSILAENGIMSVYVEGGASVHGSFVKAGCFDELHFY 311
Query: 308 ISPILIGE--AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILA 350
+PILIG A ++ + S+ L+F +I +IGPDI++ A
Sbjct: 312 FAPILIGGTLAPSLISGEGFQSMKDVPHLQFTQITQIGPDIKLTA 356
>sp|Q89AB0|RIBD_BUCBP Riboflavin biosynthesis protein RibD OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=ribD PE=3 SV=1
Length = 372
Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 149/370 (40%), Positives = 213/370 (57%), Gaps = 32/370 (8%)
Query: 1 MTLALQQAKL-SINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ AK S+ +SPNP VGC+IV I+ G+ K G HAEI AL G
Sbjct: 7 MKKAIKLAKKGSLTTSPNPNVGCIIVNNNIIVGSGWHKKTGMKHAEIYAL---KTSGEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T YITLEPCS+FG TPPC AL K GI +V+IA DPNP VSG GV L GI V
Sbjct: 64 KGATAYITLEPCSHFGKTPPCCVALTKYGISRVVIATLDPNPKVSGNGVKWLKKHGILVT 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G + KE+ +IN GFF RM GIPW+++K+ASS+D +T+L N S+WITS ++R+D
Sbjct: 124 IGTLSKESIKINKGFFQRMTTGIPWIKLKLASSIDGRTALNNGKSKWITSDKARHDVQHV 183
Query: 180 RARSCAILTGIGTVLKDNPRLNVRS----------IKTS----HQPYRIVIDSYLRIDPF 225
R +S AI++ T+L DNP L VR+ +K S QP R++IDS RI P
Sbjct: 184 REKSDAIISSSETILFDNPLLTVRNTNNNDNNQKLLKHSKTFLKQPIRVIIDSKNRITPS 243
Query: 226 FRVLKGGGSCIFTATDLPMKRKILED----LGH-EVIVLPNNLGKVDLQAVIIELGKRKI 280
+ +K G +I D H + I+L N K+DL ++ L K +I
Sbjct: 244 HKCIKQPGLLFLI--------RIHSDNNIWPSHIKQIILNNKSKKIDLIDLVKMLAKYQI 295
Query: 281 NELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEI 339
N + IEAG L+++ + ++EL++YI+P ++G A +F L + +L + KF +I
Sbjct: 296 NNILIEAGPSLSSSFLKLNIINELIIYIAPKILGNYAKPLFFLENYSNLSDVPQFKFEKI 355
Query: 340 QKIGPDIRIL 349
+IG D++++
Sbjct: 356 TQIGKDLKLI 365
>sp|P17618|RIBD_BACSU Riboflavin biosynthesis protein RibD OS=Bacillus subtilis (strain
168) GN=ribD PE=1 SV=1
Length = 361
Score = 224 bits (570), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 129/359 (35%), Positives = 205/359 (57%), Gaps = 15/359 (4%)
Query: 1 MTLALQQAKLSI-NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDA--LLNAAAQGY 57
M LAL AK + NP VG V+VK+ +I+ G G HAE+ A + A A+G
Sbjct: 6 MKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMAGAHAEGA 65
Query: 58 DVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGIS 117
D+Y +TLEPCS++G TPPC E +I SGIK+V +A+ DPNPLV+G+G++ + AGI
Sbjct: 66 DIY-----VTLEPCSHYGKTPPCAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIE 120
Query: 118 VKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
V++G++ +A +N F M+ G+P+V +K A+SLD K + S+WITS+ +R D+
Sbjct: 121 VREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIATSTGDSKWITSEAARQDAQ 180
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVL--KGGGSC 235
+R +IL G+GTV DNP L R + QP R+++D+ L I +V+ + +
Sbjct: 181 QYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDTVLSIPEDAKVICDQIAPTW 240
Query: 236 IF-TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
IF TA K+K L G + L ++ + V+ L + I +++E G ++ +
Sbjct: 241 IFTTARADEEKKKRLSAFGVNIFTLETE--RIQIPDVLKILAEEGIMSVYVEGGSAVHGS 298
Query: 295 LILEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351
+ EGC E++ Y +P LIG A ++ + S+ L+F +I +IG DI++ A+
Sbjct: 299 FVKEGCFQEIIFYFAPKLIGGTHAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAK 357
>sp|P50853|RIBD_ACTPL Riboflavin biosynthesis protein RibD OS=Actinobacillus
pleuropneumoniae GN=ribD PE=3 SV=2
Length = 376
Score = 222 bits (565), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 136/352 (38%), Positives = 200/352 (56%), Gaps = 10/352 (2%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A+ AK + ++PNP VGCVIVK I++ GY + GG HAE +A+L+ D+
Sbjct: 19 MRRAIALAKQGLGWTNPNPLVGCVIVKNGEIVAEGYHEKIGGWHAERNAVLHCKE---DL 75
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T Y+TLEPC + G TPPC++ LI+ GIKKV I +DPNPLV+G+G QL AG+ V
Sbjct: 76 SGATAYVTLEPCCHHGRTPPCSDLLIERGIKKVFIGSSDPNPLVAGRGANQLRQAGVEVV 135
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
+GL+++E +N FF +Q P+V MK A + D K + + S+WIT + +R
Sbjct: 136 EGLLKEECDALNPIFFHYIQTKRPYVLMKYAMTADGKIATGSGESKWITGESARARVQQT 195
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRID---PFFRVLKGGGSCI 236
R + AI+ G+ TVL DNP LN R + + QP RIV DS LR + K + I
Sbjct: 196 RHQYSAIMVGVDTVLADNPMLNSR-MPNAKQPVRIVCDSQLRTPLDCQLVQTAKEYRTVI 254
Query: 237 FTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T +D K + LG +V+V +VDLQ ++ +LG+ +I+ L +E G LN + +
Sbjct: 255 ATVSDDLQKIEQFRPLGVDVLVCKARNKRVDLQDLLQKLGEMQIDSLLLEGGSSLNFSAL 314
Query: 297 LEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
G V+ + YI+P L+G +A +D+ +KLK + IG DI
Sbjct: 315 ESGIVNRVHCYIAPKLVGGKQAKTPIGGEGIQQIDQAVKLKLKSTELIGEDI 366
>sp|Q9Z735|RIBD_CHLPN Riboflavin biosynthesis protein RibD OS=Chlamydia pneumoniae
GN=ribD PE=3 SV=1
Length = 376
Score = 200 bits (508), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/312 (37%), Positives = 174/312 (55%), Gaps = 8/312 (2%)
Query: 9 KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITL 68
K I + PNP VGCV+V+E RII G+ GG HAE A+ NA+ + S VY++L
Sbjct: 21 KGRITAPPNPWVGCVVVQENRIIGEGFHAYAGGPHAEELAIQNAS---MPISGSDVYVSL 77
Query: 69 EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAY 128
EPCS+FG PPC LIK + +V +A+ DP+P V+G+G+A L AGI V G+ + EA
Sbjct: 78 EPCSHFGSCPPCANLLIKHKVSRVFVALVDPDPKVAGQGIAMLRQAGIQVYVGIGESEAQ 137
Query: 129 EINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILT 188
+ + PW +K A+S+D + + SQWIT E+R+D RA S AIL
Sbjct: 138 ASLQPYLYQRTHNFPWTILKSAASVDGQVADSQGKSQWITCPEARHDVGKLRAESQAILV 197
Query: 189 GIGTVLKDNPRLNVRSIKT---SHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMK 245
G TVL D+P L R + QP R+V+DS + P +V ++ T+ +
Sbjct: 198 GSRTVLSDDPWLTARQPQGMLYPKQPLRVVLDSRGSVPPTSKVFDKTSPTLYVTTERCPE 257
Query: 246 R--KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDE 303
K+L+ L V++ + VDL V L ++KI ++ +E G L+T+L+ E V+
Sbjct: 258 NYIKVLDSLDVPVLLTESTPSGVDLHKVYEYLAQKKILQVLVEGGTTLHTSLLKERFVNS 317
Query: 304 LLLYISPILIGE 315
L+LY P+++G+
Sbjct: 318 LVLYSGPMILGD 329
>sp|O84735|RIBD_CHLTR Riboflavin biosynthesis protein RibD OS=Chlamydia trachomatis
(strain D/UW-3/Cx) GN=ribD PE=3 SV=1
Length = 375
Score = 191 bits (486), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 176/313 (56%), Gaps = 11/313 (3%)
Query: 9 KLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITL 68
K I + PNP VGCVIVK +I G+ + G HAE+ A+ + Q + + V++TL
Sbjct: 21 KGRIFAPPNPWVGCVIVKNGCVIGEGWHQGIGSPHAEVCAVQD---QKCSLEGAEVFVTL 77
Query: 69 EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAY 128
EPC +FG TPPC + LIKS + V + + DP+P V KGVA+L +AGI V G+ +EA
Sbjct: 78 EPCCHFGRTPPCVDLLIKSKVAAVYVGLLDPDPRVCKKGVARLQAAGIPVYVGVGSQEAK 137
Query: 129 EINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILT 188
+ + +RG+PWV MK A+SLD +T+ SSQWI+ + +R D RA S AI+
Sbjct: 138 TSLQPYLYQRERGLPWVVMKTAASLDGQTADRGGSSQWISGELARADVGKLRAESQAIIV 197
Query: 189 GIGTVLKDNPRLNVRSIKT---SHQPYRIVIDSYLRIDPFFRVLK-GGGSCIFTATDLPM 244
G TV DNPRL+ R QP R+V+DS + RV GS +F T
Sbjct: 198 GARTVCLDNPRLSARFPHGDLYERQPLRVVVDSRGTVPLESRVFDLSSGSTLFATTQQCP 257
Query: 245 KRKI--LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVD 302
K I L+DLG E V ++ +VDL+ ++ L +R ++ +E G QL++A + V+
Sbjct: 258 KEYIQKLKDLGVE--VWESSSHQVDLKGLLRYLAERGCLQVLVEGGAQLHSAFWQQKLVN 315
Query: 303 ELLLYISPILIGE 315
++Y P +G+
Sbjct: 316 AGVIYWGPKFLGD 328
>sp|Q9PLJ6|RIBD_CHLMU Riboflavin biosynthesis protein RibD OS=Chlamydia muridarum (strain
MoPn / Nigg) GN=ribD PE=3 SV=2
Length = 371
Score = 188 bits (477), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 123/342 (35%), Positives = 183/342 (53%), Gaps = 11/342 (3%)
Query: 12 INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
I + PNP VGCVIVK II G+ K G HAE+ A + Q + + VY+TLEPC
Sbjct: 24 IFAPPNPWVGCVIVKNGCIIGRGWHKGIGSPHAEVCAFQD---QTSSLVGADVYVTLEPC 80
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
+FG TPPC + LIKS + V IA+ DP+P V +GVA+L AGISV G+ +EA
Sbjct: 81 CHFGRTPPCVDLLIKSKVSSVYIALLDPDPRVCKRGVARLKEAGISVYVGIGHEEAKASL 140
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
+ + + G+PWV MK A+SLD +TS SQWI+ +++R D RA S A++ G
Sbjct: 141 QPYLHQRETGLPWVVMKTAASLDGQTSDRRGISQWISGEQARLDVGRLRAESQAVIVGSR 200
Query: 192 TVLKDNPRLNVRSIKT---SHQPYRIVIDSYLRIDPFFRVLK-GGGSCIFTATDLPMKRK 247
TV DNPRL+ R QP R+V+DS + RV G+ + T+ K
Sbjct: 201 TVCLDNPRLSARMPSGDLYERQPLRVVVDSRGSVPLDARVWNPDSGNVLLATTEQCSKEH 260
Query: 248 I--LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELL 305
I LED G E V ++ +VDL+ ++ L ++ ++ +E G +L++A E V+ +
Sbjct: 261 IQKLEDRGVE--VWKSSPQQVDLKRLLQYLAEKGCLQVLVEGGARLHSAFWREHLVNAGV 318
Query: 306 LYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR 347
+Y P +G+ + LD +K + +G ++
Sbjct: 319 IYWGPKFLGDQGSPMLRDLQLCLDNAEHVKITKTFLVGDSVK 360
>sp|P71677|RIBD_MYCTU Riboflavin biosynthesis protein RibD OS=Mycobacterium tuberculosis
GN=ribD PE=3 SV=1
Length = 339
Score = 172 bits (437), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 113/352 (32%), Positives = 180/352 (51%), Gaps = 38/352 (10%)
Query: 1 MTLALQQA-KLSINSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYD 58
M LA++ + ++ + P P VG VIV RI+ G T+ GG+HAE+ AL A G
Sbjct: 13 MGLAIEHSYQVKGTTYPKPPVGAVIVDPNGRIVGAGGTEPAGGDHAEVVALRRA---GGL 69
Query: 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISV 118
+ V +T+EPC+++G TPPC ALI++ + V+ A+ DPN ++G G +L +AG+ V
Sbjct: 70 AAGAIVVVTMEPCNHYGKTPPCVNALIEARVGTVVYAVADPNG-IAGGGAGRLSAAGLQV 128
Query: 119 KQGLMQKEAYEINIGFFSRMQR-GIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSH 177
+ G++ ++ + + QR G+P V K A+S+D +++ + SSQWI+S+ +R D H
Sbjct: 129 RSGVLAEQVAAGPLREWLHKQRTGLPHVTWKYATSIDGRSAAADGSSQWISSEAARLDLH 188
Query: 178 IWRARSCAILTGIGTVLKDNPRLNVRSIKTS---HQPYRIVIDSYLRIDPFFRVLKGGGS 234
RA + AIL G GTVL D+P L R S QP R+V+ I P RVL
Sbjct: 189 RRRAIADAILVGTGTVLADDPALTARLADGSLAPQQPLRVVVGKR-DIPPEARVLNDEAR 247
Query: 235 CIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294
+ T PM ++L L VL +E G L A
Sbjct: 248 TMMIRTHEPM--EVLRALSDRTDVL-------------------------LEGGPTLAGA 280
Query: 295 LILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
+ G ++ +L Y++PIL+G ++ ++ +F ++K+GPD+
Sbjct: 281 FLRAGAINRILAYVAPILLGGPVTAVDDVGVSNITNALRWQFDSVEKVGPDL 332
>sp|Q55158|RIBD_SYNY3 Riboflavin biosynthesis protein RibD OS=Synechocystis sp. (strain
PCC 6803 / Kazusa) GN=ribD PE=3 SV=1
Length = 368
Score = 162 bits (410), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 115/351 (32%), Positives = 178/351 (50%), Gaps = 14/351 (3%)
Query: 1 MTLALQQAKLSIN-SSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M L AK +I ++PNP VG VIV+ I+ G+ G H EI AL A G
Sbjct: 8 MRRCLTLAKTAIGKTAPNPLVGSVIVQGDEIVGQGFHPQAGQPHGEIFALWEA---GDRA 64
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
+T+Y+ LEPC++ G TPPCTEA+I++GI KV++ + DPNPLV+GKG+++L AGI VK
Sbjct: 65 KGATLYVNLEPCNHQGRTPPCTEAIIQAGIAKVVVGMVDPNPLVAGKGISRLRQAGIEVK 124
Query: 120 QGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIW 179
G+ ++ +N F R++ P+ K A +LD K + S W+TS +R+ H
Sbjct: 125 VGVEEEACQRLNEAFCFRIKHQRPFGIFKYAMTLDGKIATAQAHSSWVTSSSARHWVHQL 184
Query: 180 RARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239
R++ A++ G TV +DNP L + + P R+V+ L + ++ +
Sbjct: 185 RSQCQAVIIGGNTVRRDNPLLTNHGVGEVN-PLRVVLSRSLDLPIEAQLWDQDVAKTLVI 243
Query: 240 TDLPMKRKI---LEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296
T+ R LE L E +VL ++ AV+ EL +R ++ E G L I
Sbjct: 244 TEKTCDRNTLSHLEKLEVETLVLE----QLTPLAVMEELYQRNCLQVLWECGGILAAEAI 299
Query: 297 LEGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD 345
G V ++ +++P +IG A + + + L Q IGPD
Sbjct: 300 AMGTVQKVHAFLAPKIIGGVAAPTPVGELGFQQMTQALNLTDLHCQAIGPD 350
>sp|O24750|RIBD_CORAM Riboflavin biosynthesis protein RibD OS=Corynebacterium
ammoniagenes GN=ribD PE=3 SV=1
Length = 337
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 105/318 (33%), Positives = 154/318 (48%), Gaps = 40/318 (12%)
Query: 13 NSSPNPRVGCVIVKEK-RIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPC 71
+SPNP VG VI+ I+ G T+ GG HAE+ AL +AA + +T +TLEPC
Sbjct: 32 TTSPNPPVGAVIISTSGEIVGTGATQPVGGVHAEVQALADAAGK---TEGATAVVTLEPC 88
Query: 72 SYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEIN 131
+ G T PCT+ALI++GIK V+ +DPNP +G G L+ AGI+V Q + +
Sbjct: 89 RHTGRTGPCTQALIEAGIKDVLFLHSDPNP-SAGGGEQVLVDAGINVVQLPSPEGVPDAL 147
Query: 132 IGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIG 191
I + +Q P V +K A ++D T+ + +SQWIT + +R+ H R AI+ G G
Sbjct: 148 IPWLKSVQLRRPHVTLKFAQTIDGFTAAADGTSQWITGEMARDYVHADREHRDAIIIGTG 207
Query: 192 TVLKDNPRLNVR---SIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKI 248
T L DNP L R + HQP R+VI R+
Sbjct: 208 TALIDNPSLTARYPDGTQREHQPRRVVI----------------------------GRRN 239
Query: 249 LEDLGHEVIVLPNNLG---KVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELL 305
+ D G L N LG + + EL ++ +E G L + +G VD L
Sbjct: 240 IADAGDAASNL-NRLGFEQYATIDEALAELYATGARDVLVEGGAGLASGFANQGLVDWLQ 298
Query: 306 LYISPILIGEAYNMFTLP 323
+Y +P+L+GE ++ P
Sbjct: 299 VYQAPLLLGEGISVLAHP 316
>sp|Q8K9A4|RIBD1_BUCAP Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=ribD1 PE=3 SV=1
Length = 147
Score = 153 bits (386), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 82/144 (56%), Positives = 101/144 (70%), Gaps = 4/144 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
MT A++ +KL +SPNP VGCVIV+ K+I+ G+ K G NHAEI+AL A G
Sbjct: 7 MTRAIKLSKLGEFTTSPNPNVGCVIVQNKKIVGEGWHKKYGENHAEINALNMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
ST YITLEPC++FG TPPC +A+I+SGIK VII+ DPNP VSGKGV L GISVK
Sbjct: 64 KGSTAYITLEPCNHFGKTPPCCDAIIQSGIKNVIISSLDPNPKVSGKGVLYLRKKGISVK 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIP 143
GLM KE+ + N GFF RM+ G+P
Sbjct: 124 IGLMSKESQKYNKGFFKRMRTGLP 147
>sp|P57533|RIBD1_BUCAI Diaminohydroxyphosphoribosylamino-pyrimidine deaminase OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=ribD1 PE=3 SV=2
Length = 147
Score = 140 bits (353), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 72/144 (50%), Positives = 94/144 (65%), Gaps = 4/144 (2%)
Query: 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDV 59
M A++ +KL ++PNP VGCVIVK I+ G+ + G NHAEI+AL+ A G
Sbjct: 7 MKRAIELSKLGEFTTAPNPNVGCVIVKNNIIVGEGWHEQAGKNHAEINALIMA---GEKA 63
Query: 60 YNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119
T Y+TLEPC++FG TPPC ALIKSGI +V+I+ DPNP +SG G+ L GI VK
Sbjct: 64 QGGTAYVTLEPCNHFGKTPPCCNALIKSGINRVVISNIDPNPKISGNGILYLKKHGICVK 123
Query: 120 QGLMQKEAYEINIGFFSRMQRGIP 143
GL+ KE+ + N GFF RM+ G P
Sbjct: 124 TGLLSKESKQYNKGFFKRMKTGFP 147
>sp|Q8K9A3|RIBD2_BUCAP 5-amino-6-(5-phosphoribosylamino)uracil reductase OS=Buchnera
aphidicola subsp. Schizaphis graminum (strain Sg)
GN=ribD2 PE=3 SV=1
Length = 217
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 74/210 (35%), Positives = 114/210 (54%), Gaps = 16/210 (7%)
Query: 152 SLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTS--- 208
S+D + ++ N S+WITSKESR D +RA+S AILT T+L D+P LNVR K
Sbjct: 2 SIDGRIAMKNGESRWITSKESREDVQKFRAKSSAILTSSATILNDDPLLNVRYKKFDKNT 61
Query: 209 ---------HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVL 259
QP RI+IDS R+ ++++ + L + ++I + ++I+
Sbjct: 62 LSTFPKKIFQQPIRIIIDSKNRVKKSHKIIQTKEKILLMR--LKLDKEIWPENTKQIIIK 119
Query: 260 PNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYN 318
P +DL V+ LG +IN L IEAG L+ + +DE+++YI+P ++G EA
Sbjct: 120 PYK-ENIDLLCVLKFLGNLEINNLWIEAGSTLSGCFLKLELIDEIIIYIAPKILGHEAKP 178
Query: 319 MFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348
+F L +K F +I++IGPDIRI
Sbjct: 179 LFIFNNQLKLFDCLKFDFKDIRQIGPDIRI 208
>sp|Q58085|RIB7_METJA 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Methanocaldococcus jannaschii (strain ATCC
43067 / DSM 2661 / JAL-1 / JCM 10045 / NBRC 100440)
GN=arfC PE=1 SV=1
Length = 224
Score = 108 bits (271), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 76/211 (36%), Positives = 110/211 (52%), Gaps = 10/211 (4%)
Query: 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNV 202
P++ + +LD K + NN S+ I+ +E H RA I+ GIGTVLKD+PRL V
Sbjct: 9 PYIISNVGMTLDGKLATINNDSR-ISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPRLTV 67
Query: 203 RSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTAT-----DLPMKRKILEDLGHEVI 257
IK+ P RIV+DS LR+ RVL I T + K KILED+G EV+
Sbjct: 68 HKIKSDRNPVRIVVDSKLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVV 127
Query: 258 VLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIG--E 315
GKVDL+ ++ L + I + +E G LN + EG VDE+ +YI+P + G E
Sbjct: 128 --KCGRGKVDLKKLMDILYDKGIKSILLEGGGTLNWGMFKEGLVDEVSVYIAPKIFGGKE 185
Query: 316 AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI 346
A ++D+ +KL+ ++G I
Sbjct: 186 APTYVDGEGFKTVDECVKLELKNFYRLGEGI 216
>sp|O28272|RIB7_ARCFU 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Archaeoglobus fulgidus (strain ATCC 49558 /
VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=AF_2007
PE=3 SV=1
Length = 219
Score = 89.4 bits (220), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 68/220 (30%), Positives = 110/220 (50%), Gaps = 15/220 (6%)
Query: 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNV 202
P+V + +A+SLD K S + I+ +E RA S AI+ GIGTVL D+PRL V
Sbjct: 3 PYVFVNVAASLDGKISDESRKQLRISCEEDLRIVDRLRAESDAIMVGIGTVLADDPRLTV 62
Query: 203 RSIKTSHQ---------PYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILE-DL 252
+S + + P R+V+DS R+ R+L + + + + K+ E
Sbjct: 63 KSAELREKRQKDGKEPNPLRVVVDSRCRVPLTARILNDEARTLVAVSRIAPEEKVREVKK 122
Query: 253 GHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPIL 312
EV V +V+L A++ L ++ + L +E G L ++LI + VDE+ +Y PI
Sbjct: 123 VAEVAVFGEE--RVELSALLEFLHRKGVRRLMVEGGGTLISSLISQNLVDEIRIYYGPIF 180
Query: 313 IGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
IG + T+ S KK ++ +I++IG + ARF
Sbjct: 181 IG-GRDSPTVCDGESFLKKCRI--EKIERIGEGFAVTARF 217
>sp|P57534|RIBD2_BUCAI 5-amino-6-(5-phosphoribosylamino)uracil reductase OS=Buchnera
aphidicola subsp. Acyrthosiphon pisum (strain APS)
GN=ribD2 PE=3 SV=1
Length = 207
Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 69/204 (33%), Positives = 111/204 (54%), Gaps = 16/204 (7%)
Query: 159 LYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVR---------SI---K 206
+ N S+WITSK++R D +RA+S IL+ T+L DNP LNVR SI K
Sbjct: 1 MRNGDSKWITSKQARQDVQKFRAKSSVILSSSSTILSDNPLLNVRYKELDKKTLSIFPNK 60
Query: 207 TSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKV 266
P R++IDS R+ P ++K G L RKI ++I +N K+
Sbjct: 61 IFQHPIRVIIDSKNRVQPSHNIIKTKGKIWLIR--LKSDRKIWPKNTTQIIEKDHN-KKI 117
Query: 267 DLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIG-EAYNMFTLPPH 325
++ +++ LG+ +IN + IEAG L+ L+ +DEL++Y++P ++G EA + +
Sbjct: 118 NIFSLLKFLGQSEINNVWIEAGSTLSGFLLNSYLIDELIIYMAPKILGHEAKPLCMIYEK 177
Query: 326 YSLDKKIKLKFHEIQKIGPDIRIL 349
+ ++ KF I +IGPDIR++
Sbjct: 178 LKISNSLQFKFKNICQIGPDIRLI 201
>sp|O26337|RIB7_METTH 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Methanothermobacter thermautotrophicus
(strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330
/ Delta H) GN=MTH_235 PE=3 SV=1
Length = 216
Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 101/209 (48%), Gaps = 8/209 (3%)
Query: 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNV 202
P+V + A +LD K + SS+ I+ +E H R AI+ GI TVL D+PRL V
Sbjct: 3 PYVILNAAMTLDGKIATATGSSE-ISGEEDLRRVHELRRECDAIMVGINTVLADDPRLTV 61
Query: 203 RSIKTS--HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLP 260
+ + P R+V+DS R P FRVL + ++ ++ E L V+
Sbjct: 62 HRVDAAPGDNPVRVVVDSMARTPPHFRVLNDEAPTVIGVSESAPPERVAE-LRKRAEVVV 120
Query: 261 NNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMF 320
+VDL ++ L I L +E G LN +++ G VDE+ + I+P+++G +
Sbjct: 121 AGTRRVDLHLLLERLHGMGIERLMLEGGSTLNYSMLTGGLVDEVRVCIAPMIVG-GRDAR 179
Query: 321 TLPPHYSLDK---KIKLKFHEIQKIGPDI 346
TL +D+ I+L+ +G D+
Sbjct: 180 TLVDGEGIDEMADAIRLELKRSYTLGEDL 208
>sp|O66747|RIB7_AQUAE 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Aquifex aeolicus (strain VF5) GN=ribD2 PE=1
SV=1
Length = 224
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 90/184 (48%), Gaps = 12/184 (6%)
Query: 138 MQRGIPWVRMKIASSLDNKTSLYNNSSQ----WITSKESRNDSHIWRARSCAILTGIGTV 193
M+R P+V + S+D K +LY +S + +E+ H RA+ I+ G TV
Sbjct: 1 MER--PYVIIVSEVSVDGKLTLYRGASSKELMSLMDEEAYKYLHEIRAKVDGIMVGCETV 58
Query: 194 LKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVL--KGGGSCIFTATDLPMKR-KILE 250
DNP L VR K P RI+ S + VL K + I T P +R + ++
Sbjct: 59 RTDNPSLTVRYAK-GKNPVRIIPCSTANVPLDANVLNTKEAPTIIATTERAPKERLEKIK 117
Query: 251 DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISP 310
+LG EVIV+ + L VD ++ EL +R I L +E G +N + VDE+ L P
Sbjct: 118 ELGAEVIVVGDEL--VDFDKLLPELYRRGIKSLMVEGGASINWEFVRRRVVDEIRLIHLP 175
Query: 311 ILIG 314
+++G
Sbjct: 176 VIVG 179
>sp|P68397|TADA_SHIFL tRNA-specific adenosine deaminase OS=Shigella flexneri GN=tadA PE=3
SV=2
Length = 167
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAA--A 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHALTLAKRAWDEREVP-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A+I S I +V+ D +G + L
Sbjct: 71 QNYRLIDATLYVTLEPCVM------CAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLD 154
G + + +G++ E + FF RM+R + K SS D
Sbjct: 125 GMNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 167
>sp|P68398|TADA_ECOLI tRNA-specific adenosine deaminase OS=Escherichia coli (strain K12)
GN=tadA PE=1 SV=2
Length = 167
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 50/164 (30%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAA--A 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHALTLAKRAWDEREVP-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A+I S I +V+ D +G + L
Sbjct: 71 QNYRLIDATLYVTLEPCVM------CAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLD 154
G + + +G++ E + FF RM+R + K SS D
Sbjct: 125 GMNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 167
>sp|Q7CQ08|TADA_SALTY tRNA-specific adenosine deaminase OS=Salmonella typhimurium (strain
LT2 / SGSC1412 / ATCC 700720) GN=tadA PE=3 SV=2
Length = 172
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAA-- 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHALTLAKRAWDEREVP-VGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVL 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A++ S I +V+ D +G + L
Sbjct: 71 QNYRLLDTTLYVTLEPCVM------CAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQR 140
G + + +G+++ E + FF RM+R
Sbjct: 125 GMNHRVEIIEGVLRDECATLLSDFF-RMRR 153
>sp|Q8XGY4|TADA_SALTI tRNA-specific adenosine deaminase OS=Salmonella typhi GN=tadA PE=3
SV=2
Length = 172
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 71/150 (47%), Gaps = 18/150 (12%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAA-- 54
M AL AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHALTLAKRAWDEREVP-VGAVLVHNHRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVL 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A++ S I +V+ D +G + L
Sbjct: 71 QNYRLLDTTLYVTLEPCVM------CAGAMVHSRIGRVVFGARDAKTGAAGSLIDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQR 140
G + + +G+++ E + FF RM+R
Sbjct: 125 GMNHRVEIIEGVLRDECATLLSDFF-RMRR 153
>sp|Q8FF24|TADA_ECOL6 tRNA-specific adenosine deaminase OS=Escherichia coli O6:H1 (strain
CFT073 / ATCC 700928 / UPEC) GN=tadA PE=3 SV=2
Length = 167
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAA--A 54
M A+ AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHAMTLAKRAWDEREVP-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A+I S I +V+ D +G + L
Sbjct: 71 QNYRLIDATLYVTLEPCVM------CAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLD 154
G + + +G++ E + FF RM+R + K SS D
Sbjct: 125 GMNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 167
>sp|Q8XA44|TADA_ECO57 tRNA-specific adenosine deaminase OS=Escherichia coli O157:H7
GN=tadA PE=3 SV=2
Length = 167
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/164 (29%), Positives = 75/164 (45%), Gaps = 18/164 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAA--A 54
M A+ AK + + P VG V+V R+I G+ + G + HAEI AL
Sbjct: 12 MRHAMTLAKRAWDEREVP-VGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVM 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
Q Y + ++T+Y+TLEPC C A+I S I +V+ D +G + L
Sbjct: 71 QNYRLIDATLYVTLEPCVM------CAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHP 124
Query: 115 G----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLD 154
G + + +G++ E + FF RM+R + K SS D
Sbjct: 125 GMNHRVEITEGILADECAALLSDFF-RMRRQEIKAQKKAQSSTD 167
>sp|P57343|Y255_BUCAI Uncharacterized protein BU255 OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=BU255 PE=3 SV=1
Length = 161
Score = 57.0 bits (136), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 74/151 (49%), Gaps = 17/151 (11%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAAQ- 55
M +AL+ A + P +G ++V ++RII G+ S N HAEI AL A +
Sbjct: 10 MKIALKYAYYAKEKGEIP-IGAILVFKERIIGIGWNSSISKNDPTAHAEIIALRGAGKKI 68
Query: 56 -GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIN----DPNPLVSGKGVAQ 110
Y + N+T+Y+TL+PC C A+I+S IK+++ N D +
Sbjct: 69 KNYRLLNTTLYVTLQPCIM------CCGAIIQSRIKRLVFGANCNSSDHRFSLKNLFCDP 122
Query: 111 LISAGISVKQGLMQKEAYEINIGFFSRMQRG 141
+ +K+ +MQ+E +I I FF + ++
Sbjct: 123 QKDYKLDIKKNVMQRECSDILINFFQKKRKN 153
>sp|P87241|RIB2_SCHPO Diaminohydroxyphosphoribosylamino-pyrimidine deaminase
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=rib2 PE=3 SV=1
Length = 405
Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS-PGGNHAEIDALLNAAAQGYDV 59
M AL +AK + VG VIV+ +I+S GY++ PG HAE A + + +
Sbjct: 262 MLKALNEAKKCEPTDSAFCVGAVIVQNGKIVSTGYSRERPGNTHAE-----ECAIEKFML 316
Query: 60 YNST-------VYITLEPCS-YFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQL 111
N T +Y T+EPCS CT+ ++K V++ +P+ V +GV L
Sbjct: 317 KNPTDSLEGAIMYSTMEPCSKRLSKKVSCTDLIVKQKFSTVVLGSLEPDIFVKCEGVDLL 376
Query: 112 ISAGISVKQGL 122
AGI V + L
Sbjct: 377 KKAGIVVIEKL 387
>sp|P30648|DCTD_CAEEL Probable deoxycytidylate deaminase OS=Caenorhabditis elegans
GN=ZK643.2 PE=3 SV=1
Length = 197
Score = 52.8 bits (125), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 66/140 (47%), Gaps = 31/140 (22%)
Query: 15 SPNPRVGCVIV-KEKRIISCGYTKSPGG---------------------NHAEIDALLNA 52
PN +VGCVIV K+ I+S GY P G HAE++A++N
Sbjct: 67 DPNTQVGCVIVDKDNCIVSVGYNGFPIGVDDDVFRWDKEDPEDNKHLYVVHAEMNAIINK 126
Query: 53 AAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLI 112
+++ TVY+TL PC+ C + LI+S +KKV + + + L L
Sbjct: 127 RCTT--LHDCTVYVTLFPCN------KCAQMLIQSRVKKVYF-LENRDELAFRASKKMLD 177
Query: 113 SAGISVKQGLMQKEAYEINI 132
A + +Q +M +EAY I +
Sbjct: 178 HARLPYEQIVMPQEAYVIEL 197
>sp|Q8K9R4|Y246_BUCAP Uncharacterized protein BUsg_246 OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=BUsg_246 PE=3 SV=1
Length = 151
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 71/145 (48%), Gaps = 18/145 (12%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDALLNAAA-- 54
M +AL+ A + + P +G ++V +++II G+ N HAEI AL A
Sbjct: 10 MKIALKYAYYAEENGEVP-IGAILVFQEKIIGTGWNSVISQNDSTAHAEIIALREAGRNI 68
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIN----DPNPLVSGKGVAQ 110
+ Y + N+T+Y+TL+PC C A+I S IK+++ + NP + K
Sbjct: 69 KNYRLVNTTLYVTLQPCMM------CCGAIINSRIKRLVFGASYKDLKKNPFLK-KIFIN 121
Query: 111 LISAGISVKQGLMQKEAYEINIGFF 135
L + +K+ +M+ E +I FF
Sbjct: 122 LEKNKLKIKKHIMRNECAKILSNFF 146
>sp|P44931|TADA_HAEIN tRNA-specific adenosine deaminase OS=Haemophilus influenzae (strain
ATCC 51907 / DSM 11121 / KW20 / Rd) GN=tadA PE=3 SV=1
Length = 173
Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/86 (39%), Positives = 48/86 (55%), Gaps = 13/86 (15%)
Query: 20 VGCVIVKEKR-IISCGYT----KSPGGNHAEIDALLNAAA--QGYDVYNSTVYITLEPCS 72
VG V+V + R II G+ +S HAEI AL N A Q Y + NST+Y+TLEPC+
Sbjct: 33 VGAVLVDDARNIIGEGWNLSIVQSDPTAHAEIIALRNGAKNIQNYRLLNSTLYVTLEPCT 92
Query: 73 YFGYTPPCTEALIKSGIKKVIIAIND 98
C A++ S IK+++ +D
Sbjct: 93 M------CAGAILHSRIKRLVFGASD 112
>sp|Q6BII9|RIB7_DEBHA 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Debaryomyces hansenii (strain ATCC 36239 /
CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=RIB7 PE=3
SV=1
Length = 247
Score = 48.5 bits (114), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 87/197 (44%), Gaps = 31/197 (15%)
Query: 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNV 202
P+V + A SLD++ + I+ E++ +H R++ I+ GIGTVL D+P+LN
Sbjct: 26 PFVTLTYAQSLDSRIAAKPGEQTKISHLETKTMTHYIRSKHDGIMVGIGTVLADDPKLNC 85
Query: 203 RSIKTS---HQPYRIVID---------SYLR--------IDPFFRVLKGGGSCIFTATDL 242
R P I++D S LR + PF + + T T
Sbjct: 86 RFEAEDGNISTPRPIILDPTGKWAYHKSQLRSVCDNNKGLAPFILIDE-------TVTPR 138
Query: 243 PMKRKILEDLGHEVIVLP--NNLGKVDLQAVII-ELGKRKINELHIEAGYQ-LNTALILE 298
++L+ + LP N KV +I+ +L + I + +E G +N L+
Sbjct: 139 NEDVEVLDKQDGAFVRLPLLRNADKVGNWNIILKKLFQLGIKSIMVEGGASIINDLLVYS 198
Query: 299 GCVDELLLYISPILIGE 315
+D L++ I P+ +G+
Sbjct: 199 KIIDSLIITIGPVFLGK 215
>sp|P00814|DCTD_BPT2 Deoxycytidylate deaminase OS=Enterobacteria phage T2 GN=CD PE=1
SV=1
Length = 188
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 23 VIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTE 82
V+ KE R ++ S HAE++A+L AA G + +T+Y+TL PC P C +
Sbjct: 85 VLAKEHRSAHSEWS-SKNEIHAELNAILFAARNGSSIEGATMYVTLSPC------PDCAK 137
Query: 83 ALIKSGIKKVI 93
A+ +SGIKK++
Sbjct: 138 AIAQSGIKKLV 148
>sp|P16006|DCTD_BPT4 Deoxycytidylate deaminase OS=Enterobacteria phage T4 GN=CD PE=1
SV=1
Length = 193
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 42/71 (59%), Gaps = 7/71 (9%)
Query: 23 VIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTE 82
V+ KE R ++ S HAE++A+L AA G + +T+Y+TL PC P C +
Sbjct: 85 VLAKEHRSAHSEWS-SKNEIHAELNAILFAARNGSSIEGATMYVTLSPC------PDCAK 137
Query: 83 ALIKSGIKKVI 93
A+ +SGIKK++
Sbjct: 138 AIAQSGIKKLV 148
>sp|P95872|RIB7_SULSO 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Sulfolobus solfataricus (strain ATCC 35092
/ DSM 1617 / JCM 11322 / P2) GN=SSO2097 PE=3 SV=1
Length = 213
Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 74/174 (42%), Gaps = 5/174 (2%)
Query: 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNV 202
P+V + S+D + + S+ ++ + H R+ A++ G TV DNP L V
Sbjct: 5 PYVIIFSTVSIDGRLATKTGYSE-LSCPYDKQRQHEIRSEVDAVMVGANTVRVDNPSLTV 63
Query: 203 RSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNN 262
+ K P R+V+ +DP +++ S + ++ + K+ E + VIV
Sbjct: 64 KYGKNRRNPIRVVVTRSFNLDPSYKIFTTPPSTVIYTSNYESE-KVEEFIRKGVIVRKFL 122
Query: 263 LGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEA 316
L+ + R+ L +E G L I + DE+ + ISP + G
Sbjct: 123 HLDDLLEDLYDNFNVRR---LMVEGGGHLIWWFIKDNLYDEIRITISPRIFGNG 173
>sp|Q9P4B8|RIB7_KLUMA 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Kluyveromyces marxianus GN=RIB7 PE=3 SV=1
Length = 249
Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/189 (23%), Positives = 87/189 (46%), Gaps = 21/189 (11%)
Query: 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNV 202
P+V + A SLD++ + + +I+ +E++ +H R + AI+ G GTV+ D+P LN
Sbjct: 30 PYVILTYAQSLDSRIAKIKGTRTFISHEETKTMTHYLRYKFDAIMLGCGTVMIDDPGLNC 89
Query: 203 RSIKTSHQPYR--------IVID---SYLRIDPFFRVLKGGG---SCIFTATDLPMKRKI 248
+ +P I++D + D + L G + I +LP +
Sbjct: 90 KWWPEDEKPEHLAGISPRPIILDPNCKWKFADSKMKKLYEAGDGKAPIIVVKELPSE--- 146
Query: 249 LEDLGHEVIVLPNNL-GKVDLQAVIIEL-GKRKINELHIE-AGYQLNTALILEGCVDELL 305
+ G + +V+ N GK+D ++++L K + + +E G +N L VD L+
Sbjct: 147 -PEEGVDYLVMRTNFTGKMDWSDMLVQLKSKFNVKSVMVEGGGIVINDLLQRPNLVDALI 205
Query: 306 LYISPILIG 314
+ + +G
Sbjct: 206 ITLGATFLG 214
>sp|P0DA21|TADA_STRPQ tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain SSI-1) GN=tadA PE=3 SV=1
Length = 171
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 24/169 (14%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL--LNAAA 54
M AL++A+ S+ + P +GCVIVK+ II G+ N HAE+ A+ NA
Sbjct: 12 MQEALKEAEKSLQKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
+ + ++T+++T+EPC C+ A+ + I VI ++ + Q+++
Sbjct: 71 GNWRLLDTTLFVTIEPCVM------CSGAIGLARIPHVIYGASN-QKFGGADSLYQILTD 123
Query: 115 G-----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTS 158
+ V++GL+ + I FF + + R KIA L + S
Sbjct: 124 ERLNHRVQVERGLLAADCANIMQTFFRQGRE-----RKKIAKHLIKEQS 167
>sp|Q5XE14|TADA_STRP6 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M6 (strain ATCC BAA-946 / MGAS10394) GN=tadA
PE=1 SV=2
Length = 171
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 24/169 (14%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL--LNAAA 54
M AL++A+ S+ + P +GCVIVK+ II G+ N HAE+ A+ NA
Sbjct: 12 MQEALKEAEKSLQKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
+ + ++T+++T+EPC C+ A+ + I VI ++ + Q+++
Sbjct: 71 GNWRLLDTTLFVTIEPCVM------CSGAIGLARIPHVIYGASN-QKFGGADSLYQILTD 123
Query: 115 G-----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTS 158
+ V++GL+ + I FF + + R KIA L + S
Sbjct: 124 ERLNHRVQVERGLLAADCANIMQTFFRQGRE-----RKKIAKHLIKEQS 167
>sp|P0DA20|TADA_STRP3 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M3 (strain ATCC BAA-595 / MGAS315) GN=tadA PE=3
SV=1
Length = 171
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 80/169 (47%), Gaps = 24/169 (14%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL--LNAAA 54
M AL++A+ S+ + P +GCVIVK+ II G+ N HAE+ A+ NA
Sbjct: 12 MQEALKEAEKSLQKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA 114
+ + ++T+++T+EPC C+ A+ + I VI ++ + Q+++
Sbjct: 71 GNWRLLDTTLFVTIEPCVM------CSGAIGLARIPHVIYGASN-QKFGGADSLYQILTD 123
Query: 115 G-----ISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTS 158
+ V++GL+ + I FF + + R KIA L + S
Sbjct: 124 ERLNHRVQVERGLLAADCANIMQTFFRQGRE-----RKKIAKHLIKEQS 167
>sp|P68999|TADA_STRP1 tRNA-specific adenosine deaminase OS=Streptococcus pyogenes
serotype M1 GN=tadA PE=3 SV=1
Length = 171
Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL--LNAAA 54
M AL++A+ S+ + P +GCVIVK+ II G+ N HAE+ A+ NA
Sbjct: 12 MQEALKEAEKSLQKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 55 QGYDVYNSTVYITLEPC 71
+ + ++T+++T+EPC
Sbjct: 71 GNWRLLDTTLFVTIEPC 87
>sp|Q8P2R7|Y196_STRP8 Uncharacterized deaminase spyM18_0196 OS=Streptococcus pyogenes
serotype M18 (strain MGAS8232) GN=spyM18_0196 PE=3 SV=1
Length = 159
Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 45/77 (58%), Gaps = 7/77 (9%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGN----HAEIDAL--LNAAA 54
M AL++A+ S+ + P +GCVIVK+ II G+ N HAE+ A+ NA
Sbjct: 12 MQEALKEAEKSLQKAEIP-IGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHE 70
Query: 55 QGYDVYNSTVYITLEPC 71
+ + ++T+++T+EPC
Sbjct: 71 GNWRLLDTTLFVTIEPC 87
>sp|P78594|FCA1_CANAX Cytosine deaminase OS=Candida albicans GN=FCA1 PE=3 SV=1
Length = 150
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 48/102 (47%), Gaps = 11/102 (10%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYT----KSPGGNHAEIDALLNAAAQG 56
+ +AL QAK S + P C+I + ++ G+ K H E+ AL NA
Sbjct: 9 LQVALDQAKKSYSEGGIPIGSCIISSDDTVLGQGHNERIQKHSAILHGEMSALENAGRLP 68
Query: 57 YDVY-NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIN 97
Y + T+Y TL PCS CT A++ G K+V++ N
Sbjct: 69 GKTYKDCTIYTTLSPCSM------CTGAILLYGFKRVVMGEN 104
>sp|Q12362|RIB2_YEAST Bifunctional protein RIB2 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RIB2 PE=1 SV=1
Length = 591
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 63/130 (48%), Gaps = 10/130 (7%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS-PGGNHAEIDALLNAAAQGYDV 59
M +A+++A + VG V+V ++++ GY++ PG HAE AL+ + +
Sbjct: 439 MEMAVKEAGKCGPTKTAFSVGAVLVHGTQVLATGYSRELPGNTHAEQCALIKYSQLHPNC 498
Query: 60 -----YNSTVYITLEPCSY--FGYTPPCTEALIKSG-IKKVIIAINDPNPLV-SGKGVAQ 110
+ +Y T+EPCS+ G P C L G I V + + +P+ V + + +
Sbjct: 499 PTIVPMGTVLYTTMEPCSFRLSGNEPCCDRILATQGAIGTVFVGVMEPDTFVKNNTSLNK 558
Query: 111 LISAGISVKQ 120
L S G++ Q
Sbjct: 559 LESHGVNYIQ 568
>sp|P32393|COMEB_BACSU ComE operon protein 2 OS=Bacillus subtilis (strain 168) GN=comEB
PE=3 SV=1
Length = 189
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/127 (26%), Positives = 58/127 (45%), Gaps = 28/127 (22%)
Query: 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGN-------------------HAEIDALLNAA 53
++ P VG IV++KR+I+ GY S G HAE++A+L +
Sbjct: 21 STCPRLSVGATIVRDKRMIAGGYNGSIAGGVHCADEGCLMIDDHCARTIHAEMNAILQCS 80
Query: 54 AQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS 113
G + +Y+T PC C +++I++GIK V A + + + Q
Sbjct: 81 KFGVPTDGAEIYVTHYPC------IQCCKSIIQAGIKTVYYAEDYKTHPYAQELFEQ--- 131
Query: 114 AGISVKQ 120
AG++V+Q
Sbjct: 132 AGVTVEQ 138
>sp|P32321|DCTD_HUMAN Deoxycytidylate deaminase OS=Homo sapiens GN=DCTD PE=1 SV=2
Length = 178
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 34/118 (28%)
Query: 1 MTLALQQAKLSINSSPNPRVG-CVIVKEKRIISCGYTKSPGG------------------ 41
M +A A+ S PN +VG C++ E +I+ GY P G
Sbjct: 20 MAVAFLSAQRS--KDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDT 77
Query: 42 -----NHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVII 94
HAE++A++N + DV ++Y+ L PC+ C + +I++GIK+VI
Sbjct: 78 KYPYVCHAELNAIMNKNST--DVKGCSMYVALFPCN------ECAKLIIQAGIKEVIF 127
>sp|P33312|RIB7_YEAST 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RIB7 PE=1 SV=1
Length = 244
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 53/222 (23%), Positives = 95/222 (42%), Gaps = 20/222 (9%)
Query: 142 IPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLN 201
+P+V + A SLD + S I+ E++ +H R IL G GTVL DNP LN
Sbjct: 29 VPFVTLTYAQSLDARVSRGPGVRTTISHPETKTMTHYLRHHHDGILVGSGTVLADNPGLN 88
Query: 202 VR--SIKTSHQPYRIVIDS--YLRID----PFFRVLKGGGSCIFTATDLPMKRKILEDLG 253
+ ++ P I+ID+ R D + + G I T P+ ++ + +
Sbjct: 89 CKWGPDPAANSPRPIIIDTKQKWRFDGSKMQELFIKRQGKPPIVVVTSEPIIKE--QHVD 146
Query: 254 HEVIVLPNNLGKVDLQAVIIELGKRKIN--ELHIEAGYQ-LNTALILEGCVDELLLYISP 310
+ + + + VD + + E+ K + N + +E G +N L+ V+ L++ I
Sbjct: 147 YAICPINDTTKLVDWKK-LFEILKEEFNIRSVMVEGGANVINQLLLRSDIVNSLIITIGS 205
Query: 311 ILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352
+G + + P + + LK K D+ + AR
Sbjct: 206 TFLGSSGTEVSPP------QTVNLKDMSWWKGITDVVLCARL 241
>sp|O67050|TADA_AQUAE tRNA-specific adenosine deaminase OS=Aquifex aeolicus (strain VF5)
GN=tadA PE=1 SV=1
Length = 151
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 53/105 (50%), Gaps = 15/105 (14%)
Query: 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYT-----KSPGGNHAEIDALLNAAAQ 55
+ +AL++AK + P VG +IVKE IIS + K P HAE+ A+ A +
Sbjct: 7 LKVALREAKRAFEKGEVP-VGAIIVKEGEIISKAHNSVEELKDPTA-HAEMLAIKEACRR 64
Query: 56 GYDVY--NSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIND 98
Y +Y+TLEPC C+ AL+ S I+KVI + D
Sbjct: 65 LNTKYLEGCELYVTLEPCIM------CSYALVLSRIEKVIFSALD 103
>sp|Q5RC69|DCTD_PONAB Deoxycytidylate deaminase OS=Pongo abelii GN=DCTD PE=2 SV=1
Length = 178
Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 54/118 (45%), Gaps = 34/118 (28%)
Query: 1 MTLALQQAKLSINSSPNPRVG-CVIVKEKRIISCGYTKSPGG------------------ 41
M +A A+ S PN +VG C++ E +I+ GY P G
Sbjct: 20 MAVAFLSAQRS--KDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDQLPWRRTAKNKLDT 77
Query: 42 -----NHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVII 94
HAE++A++N + DV ++Y+ L PC+ C + +I++GIK+VI
Sbjct: 78 KYPYVCHAELNAIMNKNST--DVKGCSMYVALFPCN------ECAKLIIQAGIKEVIF 127
>sp|Q6CJ61|RIB7_KLULA 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate
reductase OS=Kluyveromyces lactis (strain ATCC 8585 /
CBS 2359 / DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37)
GN=RIB7 PE=3 SV=1
Length = 252
Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/201 (22%), Positives = 85/201 (42%), Gaps = 22/201 (10%)
Query: 131 NIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGI 190
N G ++ P+V + A SLD + + + I+ +E+ +H R + I+ G
Sbjct: 21 NAGVLGEQEK--PYVILTYAQSLDARIAKIKGTRTIISHQETNTMTHYLRYKFDGIMLGC 78
Query: 191 GTVLKDNPRLNVRSIK---------TSHQPYRIVIDSYLRIDPFFRVLK------GGGSC 235
GTVL D+P LN + H P I++D + +K G +
Sbjct: 79 GTVLVDDPGLNCKWWPDDEPKPEHFAEHSPRPIILDPNGKWKFEGSKMKTLFDSGDGKAP 138
Query: 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIE-AGYQLNT 293
I LP +++E+ +++ N GKVD + I+L + + + +E G +N
Sbjct: 139 IVVVKKLP---EVVEENVDYLVMQTNFTGKVDWHDLFIQLKSQFGLKSIMVEGGGIVIND 195
Query: 294 ALILEGCVDELLLYISPILIG 314
L +D L++ + +G
Sbjct: 196 LLQRPHLIDALVITVGATFLG 216
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.138 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 129,997,227
Number of Sequences: 539616
Number of extensions: 5390029
Number of successful extensions: 12609
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 65
Number of HSP's that attempted gapping in prelim test: 12500
Number of HSP's gapped (non-prelim): 101
length of query: 352
length of database: 191,569,459
effective HSP length: 118
effective length of query: 234
effective length of database: 127,894,771
effective search space: 29927376414
effective search space used: 29927376414
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 62 (28.5 bits)