Query psy14502
Match_columns 352
No_of_seqs 226 out of 1907
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 21:28:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14502.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14502hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK10786 ribD bifunctional dia 100.0 1.8E-82 3.8E-87 612.0 38.0 345 1-352 7-366 (367)
2 TIGR00326 eubact_ribD riboflav 100.0 3.2E-80 6.9E-85 594.2 38.5 339 1-348 1-343 (344)
3 PLN02807 diaminohydroxyphospho 100.0 1.5E-79 3.3E-84 590.3 38.2 333 1-351 36-379 (380)
4 PRK14719 bifunctional RNAse/5- 100.0 1.2E-57 2.6E-62 435.7 31.7 286 48-351 37-354 (360)
5 COG0117 RibD Pyrimidine deamin 100.0 6.5E-47 1.4E-51 308.3 14.5 135 1-138 10-145 (146)
6 COG1985 RibD Pyrimidine reduct 100.0 2.9E-45 6.4E-50 327.9 23.5 210 140-352 1-216 (218)
7 PRK05625 5-amino-6-(5-phosphor 100.0 5.6E-43 1.2E-47 316.0 26.2 208 142-352 2-215 (217)
8 TIGR01508 rib_reduct_arch 2,5- 100.0 1E-42 2.2E-47 312.3 26.3 205 143-351 1-209 (210)
9 TIGR00227 ribD_Cterm riboflavi 100.0 4E-42 8.7E-47 310.2 25.4 209 141-351 1-215 (216)
10 PRK14059 hypothetical protein; 100.0 1.2E-40 2.5E-45 305.7 25.0 207 138-352 26-249 (251)
11 PF01872 RibD_C: RibD C-termin 100.0 1.1E-36 2.3E-41 271.6 20.2 189 143-348 1-200 (200)
12 cd01284 Riboflavin_deaminase-r 100.0 5.4E-33 1.2E-37 224.6 14.8 113 1-115 1-115 (115)
13 PRK10860 tRNA-specific adenosi 100.0 8.6E-32 1.9E-36 232.3 13.4 132 1-139 17-158 (172)
14 COG0590 CumB Cytosine/adenosin 100.0 2.6E-29 5.5E-34 213.2 10.7 129 1-136 12-151 (152)
15 PHA02588 cd deoxycytidylate de 100.0 4.2E-28 9.1E-33 208.8 14.8 121 1-132 7-163 (168)
16 TIGR02571 ComEB ComE operon pr 99.9 3.6E-27 7.8E-32 199.4 14.3 109 1-120 10-137 (151)
17 cd01285 nucleoside_deaminase N 99.9 1.1E-24 2.4E-29 175.4 12.2 95 1-102 1-102 (109)
18 cd01286 deoxycytidylate_deamin 99.9 9.4E-25 2E-29 181.1 12.0 93 1-101 5-122 (131)
19 COG2131 ComEB Deoxycytidylate 99.9 3E-23 6.6E-28 174.2 11.6 112 1-120 13-150 (164)
20 cd00786 cytidine_deaminase-lik 99.9 5E-23 1.1E-27 161.9 10.6 89 1-96 1-95 (96)
21 PF00383 dCMP_cyt_deam_1: Cyti 99.9 1.6E-21 3.4E-26 155.1 8.9 89 1-96 8-102 (102)
22 KOG1018|consensus 99.8 7.6E-21 1.6E-25 162.7 9.9 136 1-142 15-166 (169)
23 cd00209 DHFR Dihydrofolate red 99.8 2.6E-18 5.6E-23 147.5 16.7 147 145-345 1-148 (158)
24 COG0262 FolA Dihydrofolate red 99.7 5.6E-17 1.2E-21 140.2 16.6 148 145-340 2-149 (167)
25 KOG3127|consensus 99.7 6.5E-17 1.4E-21 140.4 9.2 111 1-121 71-207 (230)
26 cd01283 cytidine_deaminase Cyt 99.5 1E-13 2.2E-18 112.1 11.5 93 1-100 1-103 (112)
27 PTZ00164 bifunctional dihydrof 99.3 1.2E-10 2.6E-15 116.5 17.3 156 142-344 7-176 (514)
28 PRK00478 scpA segregation and 99.2 4.1E-10 8.9E-15 112.7 15.7 151 145-351 2-152 (505)
29 PRK10769 folA dihydrofolate re 99.1 1.8E-09 3.9E-14 92.4 13.2 140 145-342 2-141 (159)
30 PF00186 DHFR_1: Dihydrofolate 99.0 2.4E-08 5.2E-13 85.7 15.5 144 145-343 2-145 (161)
31 KOG2771|consensus 99.0 7.4E-10 1.6E-14 102.8 5.4 119 1-128 171-338 (344)
32 PF14439 Bd3614-deam: Bd3614-l 98.8 2.3E-08 5.1E-13 78.6 7.2 77 20-102 10-119 (136)
33 TIGR01354 cyt_deam_tetra cytid 98.5 1.1E-06 2.3E-11 72.6 11.1 80 2-88 5-94 (127)
34 KOG1324|consensus 97.9 0.0003 6.4E-09 60.2 13.0 128 144-310 3-140 (190)
35 PRK06848 hypothetical protein; 97.6 0.0007 1.5E-08 56.6 10.0 81 2-90 12-110 (139)
36 PRK12411 cytidine deaminase; P 97.6 0.0014 3.1E-08 54.3 11.4 79 2-88 8-97 (132)
37 PRK05578 cytidine deaminase; V 97.0 0.0086 1.9E-07 49.6 10.4 80 2-88 8-97 (131)
38 TIGR01355 cyt_deam_dimer cytid 96.8 0.013 2.7E-07 54.7 10.6 78 3-88 28-112 (283)
39 PRK08298 cytidine deaminase; V 96.7 0.015 3.3E-07 48.4 9.2 79 3-90 10-102 (136)
40 COG0295 Cdd Cytidine deaminase 96.6 0.021 4.5E-07 47.2 9.3 78 4-88 12-99 (134)
41 PRK09027 cytidine deaminase; P 96.2 0.031 6.8E-07 52.5 9.4 75 6-88 58-140 (295)
42 PLN02402 cytidine deaminase 96.2 0.032 6.8E-07 52.4 9.3 69 12-88 40-115 (303)
43 PLN02182 cytidine deaminase 95.8 0.087 1.9E-06 50.1 10.3 71 12-89 60-144 (339)
44 KOG0833|consensus 95.7 0.1 2.2E-06 44.7 9.3 84 5-95 28-124 (173)
45 PF08210 APOBEC_N: APOBEC-like 95.4 0.068 1.5E-06 47.1 7.8 100 15-120 21-144 (188)
46 PF14437 MafB19-deam: MafB19-l 95.1 0.048 1E-06 45.6 5.4 51 41-97 80-135 (146)
47 PRK09027 cytidine deaminase; P 95.1 0.14 3.1E-06 48.0 9.1 84 2-92 194-289 (295)
48 TIGR01355 cyt_deam_dimer cytid 89.8 1.9 4.1E-05 40.4 8.5 53 2-55 179-236 (283)
49 PLN02402 cytidine deaminase 86.4 1.9 4E-05 40.7 6.2 53 2-55 197-254 (303)
50 PF14440 XOO_2897-deam: Xantho 85.0 0.69 1.5E-05 37.4 2.3 60 39-101 43-104 (118)
51 PF14431 YwqJ-deaminase: YwqJ- 82.4 1.6 3.5E-05 35.7 3.5 43 41-89 66-125 (125)
52 PF13344 Hydrolase_6: Haloacid 77.8 3 6.4E-05 32.7 3.5 66 231-300 30-100 (101)
53 PF08211 dCMP_cyt_deam_2: Cyti 72.5 21 0.00044 29.2 7.2 60 2-61 38-101 (124)
54 PF04263 TPK_catalytic: Thiami 71.4 13 0.00028 30.3 5.9 45 244-289 50-94 (123)
55 cd07995 TPK Thiamine pyrophosp 65.0 20 0.00043 31.8 6.3 47 243-289 54-100 (208)
56 COG0106 HisA Phosphoribosylfor 62.6 29 0.00064 31.7 6.9 117 76-194 85-226 (241)
57 PRK11761 cysM cysteine synthas 62.6 15 0.00032 34.6 5.3 49 213-261 65-117 (296)
58 PRK00881 purH bifunctional pho 61.7 99 0.0021 31.6 11.0 103 5-120 401-505 (513)
59 TIGR01378 thi_PPkinase thiamin 61.1 23 0.00049 31.4 5.9 45 244-288 51-95 (203)
60 PF14424 Toxin-deaminase: The 57.7 19 0.00042 29.7 4.5 42 41-88 73-119 (133)
61 PF14428 SCP1201-deam: SCP1.20 56.1 18 0.0004 30.0 4.1 41 41-86 68-109 (135)
62 PF02593 dTMP_synthase: Thymid 52.6 26 0.00055 31.6 4.7 90 59-159 49-146 (217)
63 COG2185 Sbm Methylmalonyl-CoA 49.4 26 0.00057 29.4 4.0 40 265-305 77-120 (143)
64 PRK10444 UMP phosphatase; Prov 47.5 65 0.0014 29.5 6.8 67 231-300 33-102 (248)
65 KOG3076|consensus 47.3 1.4E+02 0.0031 26.3 8.3 77 235-315 40-122 (206)
66 KOG1251|consensus 46.8 1.2E+02 0.0025 28.2 7.9 97 209-308 71-181 (323)
67 PF00532 Peripla_BP_1: Peripla 46.3 93 0.002 28.7 7.8 42 268-309 106-160 (279)
68 cd02072 Glm_B12_BD B12 binding 44.9 1.7E+02 0.0038 23.9 8.2 63 246-317 20-90 (128)
69 COG1433 Uncharacterized conser 43.4 39 0.00084 27.5 4.0 39 76-120 53-91 (121)
70 COG1105 FruK Fructose-1-phosph 42.3 70 0.0015 30.5 6.1 131 142-290 86-225 (310)
71 PRK08197 threonine synthase; V 41.2 70 0.0015 31.4 6.3 84 213-298 129-224 (394)
72 cd03174 DRE_TIM_metallolyase D 41.0 75 0.0016 28.8 6.2 69 242-311 21-98 (265)
73 PF02579 Nitro_FeMo-Co: Dinitr 39.2 98 0.0021 23.0 5.6 39 234-276 55-93 (94)
74 TIGR01138 cysM cysteine syntha 38.9 65 0.0014 30.2 5.5 98 213-311 61-171 (290)
75 PLN02714 thiamin pyrophosphoki 38.6 85 0.0018 28.4 6.0 46 243-288 67-118 (229)
76 PRK08246 threonine dehydratase 37.6 80 0.0017 29.9 5.9 94 213-311 70-176 (310)
77 cd08172 GlyDH-like1 Glycerol d 37.6 69 0.0015 30.8 5.6 65 252-316 49-113 (347)
78 COG1171 IlvA Threonine dehydra 34.3 1.2E+02 0.0027 29.3 6.5 98 212-316 75-186 (347)
79 TIGR01501 MthylAspMutase methy 34.1 1.4E+02 0.0029 24.8 6.0 64 241-305 40-115 (134)
80 COG1710 Uncharacterized protei 33.2 49 0.0011 26.7 3.0 55 60-120 27-82 (139)
81 PF14441 OTT_1508_deam: OTT_15 31.8 87 0.0019 25.9 4.6 43 39-88 65-107 (142)
82 PLN02331 phosphoribosylglycina 31.3 1.2E+02 0.0025 27.1 5.5 79 234-314 30-112 (207)
83 KOG0879|consensus 31.0 38 0.00082 28.0 2.1 31 54-97 114-144 (177)
84 PF05368 NmrA: NmrA-like famil 30.7 3.7E+02 0.008 23.5 9.1 68 231-305 22-99 (233)
85 PRK05579 bifunctional phosphop 30.4 1.6E+02 0.0034 29.1 6.8 165 90-288 7-196 (399)
86 PF13540 RCC1_2: Regulator of 30.3 87 0.0019 18.4 3.2 18 20-37 10-27 (30)
87 TIGR01457 HAD-SF-IIA-hyp2 HAD- 29.7 1.6E+02 0.0034 26.8 6.3 66 231-300 33-103 (249)
88 PRK07313 phosphopantothenoylcy 29.6 1.5E+02 0.0032 25.8 5.8 45 89-134 1-46 (182)
89 COG1212 KdsB CMP-2-keto-3-deox 29.4 84 0.0018 28.6 4.2 41 74-120 25-68 (247)
90 PRK08329 threonine synthase; V 29.3 1.1E+02 0.0023 29.5 5.4 66 231-298 127-201 (347)
91 COG1979 Uncharacterized oxidor 28.9 1.9E+02 0.0041 28.0 6.6 49 253-301 56-109 (384)
92 cd03412 CbiK_N Anaerobic cobal 28.8 1E+02 0.0023 24.9 4.5 21 266-286 56-76 (127)
93 TIGR00640 acid_CoA_mut_C methy 28.6 1.2E+02 0.0026 24.9 4.8 38 247-287 24-61 (132)
94 TIGR03151 enACPred_II putative 28.3 2.8E+02 0.006 26.3 7.9 51 231-287 87-137 (307)
95 cd01561 CBS_like CBS_like: Thi 28.3 89 0.0019 29.0 4.5 31 231-261 76-107 (291)
96 PRK07476 eutB threonine dehydr 27.8 1.3E+02 0.0028 28.6 5.5 94 214-311 70-175 (322)
97 cd00248 Mth938-like Mth938-lik 27.0 1.4E+02 0.003 23.6 4.7 52 79-130 42-94 (109)
98 PRK06450 threonine synthase; V 26.7 1.6E+02 0.0034 28.3 6.0 29 231-259 120-149 (338)
99 TIGR00355 purH phosphoribosyla 26.4 2E+02 0.0044 29.4 6.7 103 4-120 398-503 (511)
100 PRK02261 methylaspartate mutas 26.4 1.4E+02 0.0031 24.6 4.9 36 247-285 25-60 (137)
101 COG0424 Maf Nucleotide-binding 26.4 1.5E+02 0.0031 26.3 5.1 49 140-193 63-111 (193)
102 PF09587 PGA_cap: Bacterial ca 26.2 4.9E+02 0.011 23.5 9.9 108 77-188 64-189 (250)
103 PF04430 DUF498: Protein of un 25.4 1E+02 0.0022 24.3 3.7 52 79-130 42-95 (110)
104 TIGR02990 ectoine_eutA ectoine 25.4 65 0.0014 29.4 2.9 40 80-120 111-150 (239)
105 cd00562 NifX_NifB This CD repr 25.1 2.1E+02 0.0045 21.4 5.5 37 78-120 51-87 (102)
106 COG0560 SerB Phosphoserine pho 24.9 88 0.0019 27.9 3.6 35 266-300 80-114 (212)
107 PF11927 DUF3445: Protein of u 24.7 38 0.00083 31.1 1.2 71 123-194 154-241 (249)
108 cd08179 NADPH_BDH NADPH-depend 24.3 2E+02 0.0043 27.9 6.3 47 246-292 45-94 (375)
109 TIGR01127 ilvA_1Cterm threonin 24.2 1.1E+02 0.0023 29.8 4.4 94 214-316 51-159 (380)
110 cd08181 PPD-like 1,3-propanedi 24.0 2.7E+02 0.0059 26.8 7.1 48 246-293 47-97 (357)
111 PF04122 CW_binding_2: Putativ 23.8 3.1E+02 0.0067 20.4 6.6 39 252-294 49-87 (92)
112 PLN02565 cysteine synthase 23.6 2.3E+02 0.0049 27.0 6.4 49 213-261 69-121 (322)
113 cd06386 PBP1_NPR_C_like Ligand 23.4 4E+02 0.0088 25.7 8.3 66 247-313 162-232 (387)
114 PF08973 TM1506: Domain of unk 23.1 1.3E+02 0.0029 24.9 4.0 93 1-120 1-93 (134)
115 cd08551 Fe-ADH iron-containing 22.5 2.7E+02 0.0058 26.8 6.8 71 246-316 44-135 (370)
116 cd05126 Mth938 Mth938 domain. 22.1 1.9E+02 0.004 23.3 4.7 54 78-131 48-102 (117)
117 cd08185 Fe-ADH1 Iron-containin 21.9 2.7E+02 0.0059 27.0 6.7 47 246-292 47-96 (380)
118 cd06373 PBP1_NPR_like Ligand b 21.8 3.7E+02 0.0081 25.8 7.7 66 248-314 169-240 (396)
119 cd00851 MTH1175 This uncharact 21.7 2.3E+02 0.005 21.3 5.0 35 236-274 67-101 (103)
120 cd00851 MTH1175 This uncharact 21.5 1.6E+02 0.0034 22.2 4.1 37 79-121 54-90 (103)
121 PRK13337 putative lipid kinase 21.4 3.2E+02 0.007 25.5 6.9 67 247-316 26-94 (304)
122 PF13727 CoA_binding_3: CoA-bi 21.3 74 0.0016 26.4 2.3 46 75-120 128-173 (175)
123 COG3340 PepE Peptidase E [Amin 21.3 2.4E+02 0.0051 25.5 5.5 53 246-302 55-109 (224)
124 COG1433 Uncharacterized conser 21.3 2.7E+02 0.0059 22.6 5.4 37 246-287 58-94 (121)
125 cd08186 Fe-ADH8 Iron-containin 21.2 4.2E+02 0.0091 25.8 7.9 47 246-292 48-97 (383)
126 COG0647 NagD Predicted sugar p 21.1 2.8E+02 0.006 25.9 6.2 82 231-316 40-130 (269)
127 PF13614 AAA_31: AAA domain; P 20.8 97 0.0021 25.3 2.9 44 267-311 106-151 (157)
128 cd08174 G1PDH-like Glycerol-1- 20.5 4.8E+02 0.01 24.7 8.0 81 233-316 27-112 (331)
No 1
>PRK10786 ribD bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=100.00 E-value=1.8e-82 Score=612.05 Aligned_cols=345 Identities=42% Similarity=0.708 Sum_probs=315.8
Q ss_pred CHHHHHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcc
Q psy14502 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (352)
Q Consensus 1 m~~a~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~ 79 (352)
|++|+++|+++ +.++++|+||||||++|+||++|||...+.+|||++||+++ +..++|||||||+|||+|+|||||
T Consensus 7 m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~g~~HAE~~ai~~a---~~~~~g~tlyvTlEPC~~~g~t~m 83 (367)
T PRK10786 7 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKAKGATAYVTLEPCSHHGRTPP 83 (367)
T ss_pred HHHHHHHHHhcCcCCCCCCCEEEEEEeCCEEEEEEeCCCCCCCCHHHHHHHHH---hhhcCCCEEEEecCCccCCCCChH
Confidence 89999999999 78899999999999999999999999999999999999999 456799999999999999999999
Q ss_pred hHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhheeccccccccCcceEEEEeecCCCCcccc
Q psy14502 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (352)
Q Consensus 80 C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~~~~rP~V~~~~a~SlDG~ia~ 159 (352)
|+.+|+++||+||||+..||++.+.+++.+.|+++||+|+.+++++||.++++.||++.+.+||||++++|+|+||+||.
T Consensus 84 C~~aii~agI~rVv~~~~dp~~~~~g~~~~~l~~~gi~v~~~~~~~e~~~l~~~f~~~~~~~rP~V~~k~A~SlDGkia~ 163 (367)
T PRK10786 84 CCDALIAAGVARVVAAMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEALNKGFLKRMRTGFPYIQLKLGASLDGRTAM 163 (367)
T ss_pred HHHHHHHhCCCEEEEecCCCCcccCchHHHHHhcCCcEEEcCCcHHHHHHHHHHHHHHhhcccceEEEEEeecCCCCccC
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCC------------CCCCCeEEEEcCCCCCCCCCc
Q psy14502 160 YNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIK------------TSHQPYRIVIDSYLRIDPFFR 227 (352)
Q Consensus 160 ~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~------------~~~~p~~vvv~~~~~~~~~~~ 227 (352)
.+|++.||++++++.++|++|+.+||||+|++|++.|+|.|++|+.. ..++|++||+|+++++|++.+
T Consensus 164 ~~g~s~~is~~~~~~~~h~lRa~~DaIlVGa~Tv~~D~P~Lt~R~~~~~~~~~~~~~~~~~~~P~rvV~d~~g~l~~~~~ 243 (367)
T PRK10786 164 ASGESQWITSPQARRDVQRLRAQSHAILTSSATVLADDPALTVRWSELDAQTQALYPQENLRQPVRIVIDSQNRVTPEHR 243 (367)
T ss_pred CCCcccccCCHHHHHHHHHHHhHCCEEEECcChHhhcCCCccccccccccccccccccccCCCCcEEEEcCCCCCCchhh
Confidence 99999999999999999999999999999999999999999999642 135899999999999999999
Q ss_pred ccc-CCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEEE
Q psy14502 228 VLK-GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLL 306 (352)
Q Consensus 228 ~~~-~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~l 306 (352)
+|+ ..++|+++++... ..+ ..+++.+.+...++++|+.++++.|+++|+++||||||++|+++|+++|||||+++
T Consensus 244 ~f~~~~~~~i~~~~~~~---~~~-~~~~~~~~v~~~~~~vdl~~~L~~L~~~Gi~~l~veGG~~l~~~~l~~~lvDe~~~ 319 (367)
T PRK10786 244 IVQQPGETWLARTQEDS---REW-PETVRTLLLPEHNGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIV 319 (367)
T ss_pred hhcCCCCEEEEEcCchh---hhh-hcCceEEEEeCCCCCcCHHHHHHHHHhCCCCEEEEeeCHHHHHHHHHCCCccEEEE
Confidence 998 7789999865422 112 33666443433344799999999999999999999999999999999999999999
Q ss_pred EEeceeecCC-CCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 307 YISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 307 ~i~P~ilG~g-~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
+++|+++|++ .++|.+.++..+.+..+|++.+++.+|++++++|+|
T Consensus 320 ~~aP~~~G~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~D~~~~~~~ 366 (367)
T PRK10786 320 YIAPKLLGSDARGLCTLPGLEKLADAPQFKFSEIRHVGPDVCLHLVP 366 (367)
T ss_pred EEcceeccCCCcccccccCccChhhCcccEEeeEEEECCeEEEEEEe
Confidence 9999999986 677887778778888999999999999999999975
No 2
>TIGR00326 eubact_ribD riboflavin biosynthesis protein RibD. This model describes the ribD protein as found in Escherichia coli. The N-terminal domain includes the conserved zinc-binding site region captured in the model dCMP_cyt_deam and shared by proteins such as cytosine deaminase, mammalian apolipoprotein B mRNA editing protein, blasticidin-S deaminase, and Bacillus subtilis competence protein comEB. The C-terminal domain is homologous to the full length of yeast HTP reductase, a protein required for riboflavin biosynthesis. A number of archaeal proteins believed related to riboflavin biosynthesis contain only this C-terminal domain and are not found as full-length matches to this model.
Probab=100.00 E-value=3.2e-80 Score=594.21 Aligned_cols=339 Identities=44% Similarity=0.724 Sum_probs=313.4
Q ss_pred CHHHHHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcc
Q psy14502 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (352)
Q Consensus 1 m~~a~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~ 79 (352)
|++|+++|+++ +.+.++|+||||||+||+||++|||...+++|||++||++| +..++|||||||+|||+|+|||||
T Consensus 1 m~~a~~~a~~~~~~~~~~~~vGaviv~~~~ii~~g~n~~~~~~HAE~~ai~~a---~~~~~g~tlyvtlEPC~~~g~~~~ 77 (344)
T TIGR00326 1 MNRALDLAKKGQGTTHPNPLVGCVIVKNGEIVGEGAHQKAGEPHAEVHALRQA---GENAKGATAYVTLEPCSHQGRTPP 77 (344)
T ss_pred CHHHHHHHHhcCCCCCCCCCEEEEEEeCCEEEEEeeCCCCCCCCHHHHHHHHh---ccccCCcEEEEeCCCCCCCCCCcH
Confidence 99999999999 77889999999999999999999999999999999999999 556799999999999999999999
Q ss_pred hHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhheeccccccccCcceEEEEeecCCCCcccc
Q psy14502 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (352)
Q Consensus 80 C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~~~~rP~V~~~~a~SlDG~ia~ 159 (352)
|+++|+|+||+|||||..||++...+.+++.|+++||+|+.+++++||.++++.||++.+.+||||++++++||||||+.
T Consensus 78 C~~ai~~~gi~~vv~~~~d~~~~~~~~~~~~l~~~gi~v~~~~~~~e~~~l~~~f~~~~~~~rP~v~~~~a~SLDG~Ia~ 157 (344)
T TIGR00326 78 CAEAIIEAGIKKVVVSMQDPNPLVAGRGAERLKQAGIEVTFGILKEEAERLNKGFLKRMRTGLPYVQLKLAASLDGKIAT 157 (344)
T ss_pred HHHHHHHcCCCEEEEEeCCCCccccchHHHHHhcCCcEEEeCCCHHHHHHHHHHHHHhhhcCCCEEEEEEeeCCCCCccc
Confidence 99999999999999999999998888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCCCCcccc-CCceEEEE
Q psy14502 160 YNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLK-GGGSCIFT 238 (352)
Q Consensus 160 ~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~~~~~~~-~~~~~v~t 238 (352)
++|.+.|++++.++.++|++|+.+|++|+|++|++.|+|.+++||+....+|.++|+|+++++++..++|+ ..++||++
T Consensus 158 ~~g~~~wi~~~~~~~~~~~lra~~DailvG~~T~~~d~p~l~~r~~~~~~~P~~vV~d~~~~~~~~~~~~~~~~~~~V~s 237 (344)
T TIGR00326 158 ASGESKWITSEAARTDAQQLRAQSDAILVGGGTVKADNPALTARLDEATEQPLRVVLDTQLRIPEFAKLIPQIAPTWIFT 237 (344)
T ss_pred cCCCccccCCHHHHHHHHHHHHHCCEEEEChhhHhHhCCcccccCCCCCCCCeEEEEcCCCCCCCcchhhcCCCCEEEEE
Confidence 99999999999999999999999999999999999999999999876556899999999999999888887 78899999
Q ss_pred cCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEEEEEeceeecCC--
Q psy14502 239 ATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEA-- 316 (352)
Q Consensus 239 ~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~g-- 316 (352)
++. .+...++..+++++... ++|+.+++++|+++|+++|+||||++|+++|+++|||||++|+++|+++|+.
T Consensus 238 ~~~--~~~~~~~~~~v~v~~~~----~~dl~~~l~~L~~~g~~~ilveGG~~L~~~ll~~gLVDEl~l~i~P~ilG~~~~ 311 (344)
T TIGR00326 238 TAR--DKKKRLEAFEVNIFPLE----KVTIREVMTQLGKRGINSVLVEGGPNLLGSFLDEGLVDELIIYIAPKLLGGTHA 311 (344)
T ss_pred CCh--hhhhHHhhCCeEEecCC----CCCHHHHHHHHHhCCCCEEEEeeHHHHHHHHHHCCCCeEEEEEEccEEecCCCC
Confidence 753 23345667788776432 5799999999999999999999999999999999999999999999999973
Q ss_pred CCCCCCCCCCCcccccCceEeEEEEEcCcEEE
Q psy14502 317 YNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348 (352)
Q Consensus 317 ~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l 348 (352)
.++|++.++..+.+..+|++++++.+|+++++
T Consensus 312 ~~~~~~~~~~~~~~~~~l~l~~~~~~g~d~~~ 343 (344)
T TIGR00326 312 PGLCSEPGFQKMADALNFKFLEINQIGPDILL 343 (344)
T ss_pred ccccccccccChhhcccceeeeEEEECCEEEe
Confidence 67777777777788899999999999999865
No 3
>PLN02807 diaminohydroxyphosphoribosylaminopyrimidine deaminase
Probab=100.00 E-value=1.5e-79 Score=590.30 Aligned_cols=333 Identities=26% Similarity=0.434 Sum_probs=303.8
Q ss_pred CHHHHHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcc
Q psy14502 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (352)
Q Consensus 1 m~~a~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~ 79 (352)
|++|+++|+++ +.+++||+||||||++|+||++|||...+.+|||++||++| +..+.|||||||||||+|+|||||
T Consensus 36 M~~Al~lA~~~~~~~~~np~VGaViV~~g~Ii~~g~n~~~g~~HAEi~Ai~~a---~~~~~g~tlyvTLEPC~h~Gktp~ 112 (380)
T PLN02807 36 MRRCVELARKAIGCTSPNPMVGCVIVKDGRIVGEGFHPKAGQPHAEVFALRDA---GDLAENATAYVSLEPCNHYGRTPP 112 (380)
T ss_pred HHHHHHHHHhhcccCCCCCCEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHh---hhhcCCcEEEEEcCCCcCCCCChH
Confidence 89999999999 88899999999999999999999999999999999999999 556789999999999999999999
Q ss_pred hHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhheeccccccccCcceEEEEeecCCCCcccc
Q psy14502 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (352)
Q Consensus 80 C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~~~~rP~V~~~~a~SlDG~ia~ 159 (352)
|+++|+++||++||||..||++.+.+++.++|+++||+|+.+++++||.++++.||+++.++||||++|+|+||||+||.
T Consensus 113 C~~aii~agI~rVv~g~~dp~~~~~g~g~~~l~~~gi~V~~g~~~~e~~~l~~~f~~~~~~~rP~V~lK~A~SlDGkia~ 192 (380)
T PLN02807 113 CTEALIKAKVKRVVVGMVDPNPIVASKGIERLRDAGIEVTVGVEEELCRKLNEAFIHRMLTGKPFVTLRYSMSMNGCLLN 192 (380)
T ss_pred HHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCCEEEeCcCHHHHHHHHHHHHHHHhhccccEEEEEEEcCCCCeeC
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCCCCcccc---CCceEE
Q psy14502 160 YNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLK---GGGSCI 236 (352)
Q Consensus 160 ~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~~~~~~~---~~~~~v 236 (352)
.+|.+. +.++.++|++|+.+||||+| +|+..|||.|++|.++ .++|++||+|+++++|.+.++|+ ..|+||
T Consensus 193 ~~g~s~----~~s~~~vh~lRa~~DAIlVG-~Tv~~DnP~Lt~R~~~-~~~PiRVVld~~l~~p~~~~i~~~~~~~~~iv 266 (380)
T PLN02807 193 QIGEGA----DDAGGYYSQLLQEYDAVILS-SALADADPLPLSQEAG-AKQPLRIIIARSESSPLQIPSLREESAAKVLV 266 (380)
T ss_pred CCCCCh----hhhhHHHHHHHhhCCEEEEc-CEeeccCCCCccCCCC-CCCCEEEEEcCCCCCCCcceecccCCCCCEEE
Confidence 988876 45667899999999999999 9999999999999753 47999999999999999999996 458999
Q ss_pred EEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEee------cHHHHHHHHHcCCCcEEEEEEec
Q psy14502 237 FTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA------GYQLNTALILEGCVDELLLYISP 310 (352)
Q Consensus 237 ~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veG------G~~l~~~fl~~gLvDEi~l~i~P 310 (352)
+++.. ......++..|++++.. +.+|+.++++.|+++|+++||||| |++|+++|++++||||+++|++|
T Consensus 267 ~t~~~-~~~~~~l~~~gv~vv~~----~~~dl~~iL~~L~~~Gi~svLVEGG~~~~~G~~L~~sfl~~~LvDei~~yiAP 341 (380)
T PLN02807 267 LADKE-SSAEPVLRRKGVEVVVL----NQINLDSILDLCYQRGLCSVLLDLRGNVGGLESLLKDALEDKLLQKVVVEVLP 341 (380)
T ss_pred EECCc-hhhHHHHHhCCeEEEEC----CCCCHHHHHHHHHHCCCCEEEEecCCCCCCHHHHHHHHHHCCCccEEEEEEcC
Confidence 98664 22345788899997753 268999999999999999999999 89999999999999999999999
Q ss_pred eeecCC-CCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEE
Q psy14502 311 ILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351 (352)
Q Consensus 311 ~ilG~g-~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~ 351 (352)
+++|+. .+.+ +..+.+..+|++++++.+|++++++|+
T Consensus 342 ~ilG~~~~~~~----~~~~~~~~~l~~~~~~~~g~Dv~l~~~ 379 (380)
T PLN02807 342 FWSGSQGQSIA----SFGGSQSFKLKRLTSREVGGSVVLEGY 379 (380)
T ss_pred ceecCCCCccc----ccChhhCcccEeeeEEEECCeEEEEEE
Confidence 999984 3332 233567889999999999999999886
No 4
>PRK14719 bifunctional RNAse/5-amino-6-(5-phosphoribosylamino)uracil reductase; Provisional
Probab=100.00 E-value=1.2e-57 Score=435.66 Aligned_cols=286 Identities=29% Similarity=0.415 Sum_probs=255.7
Q ss_pred HHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCCCCcchH-----HHHhhhCCCeeeecc
Q psy14502 48 ALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKG-----VAQLISAGISVKQGL 122 (352)
Q Consensus 48 a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~-----~~~l~~~gi~v~~~~ 122 (352)
||++. | .+|.++|+|+|||+ -|+.+|+.+||+|||++. |||+ .|++ +++|+++||+| .++
T Consensus 37 ~l~~l---g--i~g~~i~~s~~p~~------~cad~ii~~gi~rVVi~~-D~d~--~G~~~~~~~~~~L~~aGi~V-~~~ 101 (360)
T PRK14719 37 SLKNL---K--INANFITVSNTPVF------QIADDLIAENISEVILLT-DFDR--AGRVYAKNIMEEFQSRGIKV-NNL 101 (360)
T ss_pred HHHHc---C--CCCcEEEEeCCchH------HHHHHHHHcCCCEEEEEE-CCCC--CCCccchHHHHHHHHCCCEE-Eee
Confidence 66666 3 35999999999998 599999999999999999 9887 4444 99999999999 569
Q ss_pred hhhhhhhheeccccc-------cc-----------cCcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccc
Q psy14502 123 MQKEAYEINIGFFSR-------MQ-----------RGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSC 184 (352)
Q Consensus 123 ~~~~~~~l~~~f~~~-------~~-----------~~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~D 184 (352)
+++||+++++.|+++ +. ++||||++|+|+||||+||..+|++. ||+++++.++|++|+.+|
T Consensus 102 l~~e~~~l~~~~~~~ie~~~~~~~~~~~~~~~~~~~~rP~V~lK~A~SLDGkIA~~~G~s~-IT~~~ar~~vh~lRa~~D 180 (360)
T PRK14719 102 IRKEIIKYSRGDLKDIESLYPYISRRININSDLSDIMLPYVISNVGMTLDGKLATIENDSR-ISGENDLKRVHEIRKDVD 180 (360)
T ss_pred hHHHHHHHhHHhhhcchhhhhhheeccccccccccCCCCeEEEEEEEcCcCcccCCCCCCC-cCCHHHHHHHHHHHHHCC
Confidence 999999999987776 77 68999999999999999999999987 999999999999999999
Q ss_pred eEEEccccccccCCCcccCCCC--CCCCCeEEEEcCCCCCCCCCcccc-CCceEEEEcCC-C---hhhHHHHHhCCcEEE
Q psy14502 185 AILTGIGTVLKDNPRLNVRSIK--TSHQPYRIVIDSYLRIDPFFRVLK-GGGSCIFTATD-L---PMKRKILEDLGHEVI 257 (352)
Q Consensus 185 ail~G~~T~~~d~p~l~~r~~~--~~~~p~~vvv~~~~~~~~~~~~~~-~~~~~v~t~~~-~---~~~~~~l~~~g~~v~ 257 (352)
|||+|++|+.+|||.|++|+.. .+++|++||+|+++++|+++++|+ +.++||+|+.. + ..+...+++.|++++
T Consensus 181 AILVG~~Tv~~DnP~LtvR~~~~~~~~~P~RVVlD~~l~lp~~~~lf~~~~~~ii~t~~~~~~~~~~~~~~l~~~gv~v~ 260 (360)
T PRK14719 181 AIMVGIGTVLKDDPRLTVHKINASPKDNPLRIVVDSNLKIPLNARVLNKDAKTVIATTTPISDEKEEKIRKLKEMGITVL 260 (360)
T ss_pred EEEECcchHhhcCCCCccccccccCCCCCEEEEEeCCCCCCcchhhhcCCCCEEEEEcccccccchHHHHHHHhcCcEEE
Confidence 9999999999999999999541 257999999999999999999998 67999998754 2 345677888999987
Q ss_pred EecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEEEEEeceeecCC--CCCCCCCCCCCcccccCce
Q psy14502 258 VLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEA--YNMFTLPPHYSLDKKIKLK 335 (352)
Q Consensus 258 ~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~g--~~lf~~~~~~~~~~~~~l~ 335 (352)
.+++ +.+|+.++++.|+++|+++||||||++|+++|+++|||||++++++|+++|++ .++|.+.++..+.+..+|+
T Consensus 261 ~~~~--~~~dl~~~l~~L~~~gi~svlVEGG~~l~~sfl~~~LvDel~l~iaP~ilGg~~~~~~~~~~g~~~~~~a~~L~ 338 (360)
T PRK14719 261 QAGV--QKVDLRKIMNEIYKMGINKILLEGGGTLNWGMFKENLINEVRVYIAPKVFGGANSPTYVDGEGFKNVEECTKLE 338 (360)
T ss_pred EcCC--CCCCHHHHHHHHHhCCCCEEEEEeCHHHHHHHHHCCCceEEEEEEccEEECCCCCcccccccCccccccccccE
Confidence 6642 36899999999999999999999999999999999999999999999999985 5667777777788889999
Q ss_pred EeEEEEEcCcEEEEEE
Q psy14502 336 FHEIQKIGPDIRILAR 351 (352)
Q Consensus 336 l~~~~~~g~~v~l~y~ 351 (352)
+.+++.+|++++++|+
T Consensus 339 l~~~~~lg~di~l~y~ 354 (360)
T PRK14719 339 LKNYYPLDDGIVLEYR 354 (360)
T ss_pred EeEEEEECCeEEEEEE
Confidence 9999999999999886
No 5
>COG0117 RibD Pyrimidine deaminase [Coenzyme metabolism]
Probab=100.00 E-value=6.5e-47 Score=308.33 Aligned_cols=135 Identities=51% Similarity=0.886 Sum_probs=132.7
Q ss_pred CHHHHHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcc
Q psy14502 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (352)
Q Consensus 1 m~~a~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~ 79 (352)
|++|+++|+++ +.+.|||+||||||++|+||++|||...|.+|||+.||+++ +...+|+|+|||||||+|||||||
T Consensus 10 M~~Al~lA~k~~g~T~pNP~VG~VIV~~~~Ivg~G~h~~aG~pHAEv~Al~~a---g~~a~Gat~yVTLEPCsH~GrTPP 86 (146)
T COG0117 10 MERALELAEKGQGTTSPNPSVGCVIVKDGEIVGEGYHEKAGGPHAEVCALRMA---GEAARGATAYVTLEPCSHYGRTPP 86 (146)
T ss_pred HHHHHHHHHhcCCcCCCCCceeEEEEECCEEEeeeecCCCCCCcHHHHHHHHc---CcccCCCEEEEEecCcccCCCCcc
Confidence 89999999998 99999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred hHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhheecccccc
Q psy14502 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRM 138 (352)
Q Consensus 80 C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~ 138 (352)
|+++|+.+||+|||++..|||+.++++|...|+++||+|..+++++|+++++++|++++
T Consensus 87 C~~ali~agi~rVvva~~DPnp~Vag~G~~~L~~aGi~V~~gil~~e~~~l~~~f~~~~ 145 (146)
T COG0117 87 CADALIKAGVARVVVAMLDPNPLVAGGGLARLRAAGIEVEVGILEEEAEKLNEGFLKRM 145 (146)
T ss_pred hHHHHHHhCCCEEEEEecCCCccccCchHHHHHHcCCeEEEehhHHHHHHHHHHHHccc
Confidence 99999999999999999999999999999999999999999999999999999999875
No 6
>COG1985 RibD Pyrimidine reductase, riboflavin biosynthesis [Coenzyme metabolism]
Probab=100.00 E-value=2.9e-45 Score=327.87 Aligned_cols=210 Identities=41% Similarity=0.620 Sum_probs=197.9
Q ss_pred cCcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCC--CCCCeEEEEc
Q psy14502 140 RGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKT--SHQPYRIVID 217 (352)
Q Consensus 140 ~~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~--~~~p~~vvv~ 217 (352)
.+||||++|+|+||||+++..+|++.|++++.++.++|++|+.+|||++|.+|+++|||.|++|+.+. .++|.+||+|
T Consensus 1 ~~rP~v~lk~a~SlDGkia~~~g~s~~it~~~ar~~vh~lRa~~daIlvG~~TV~~DnP~Ltvr~~~~~~~~~P~rVIlD 80 (218)
T COG1985 1 RGRPFVTLKLAMSLDGKIATASGSSKWITGEEARADVHELRAESDAILVGSGTVLADNPSLTVRLPEGGEERNPVRVILD 80 (218)
T ss_pred CCCCEEEEEEEEcccCccccCCCCceeEeCHHHHHHHHHHHHHcCEEEECccEEEeeCCccccccCCCCccCCCEEEEEC
Confidence 36899999999999999999999999999999999999999999999999999999999999998863 6899999999
Q ss_pred CCCCCCCCCcccc-C--CceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHH
Q psy14502 218 SYLRIDPFFRVLK-G--GGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294 (352)
Q Consensus 218 ~~~~~~~~~~~~~-~--~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~ 294 (352)
+++++|.+.++|+ . .|+|+++++. +++.+.+++.|++++.++ .+++|+..+++.|+++|+++||||||++|+++
T Consensus 81 ~~~rlp~~~~v~~~~~~~p~~v~~~~~-~~~~~~~~~~g~~~i~~~--~~~vdl~~~l~~L~~~~i~~vlvEGG~~L~~s 157 (218)
T COG1985 81 SRLRLPLDSRVFRTGEGAPTIVVTTEP-EEKLRELKEAGVEVILLP--DGRVDLAALLEELAERGINSVLVEGGATLNGS 157 (218)
T ss_pred CCCcCCchhhhhccCCCCcEEEEecCc-hhhhhHHHhCCCEEEEcC--CCccCHHHHHHHHHhCCCcEEEEccCHHHHHH
Confidence 9999999999998 3 3999998887 778889999999999998 34899999999999999999999999999999
Q ss_pred HHHcCCCcEEEEEEeceeecC-CCCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 295 LILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 295 fl~~gLvDEi~l~i~P~ilG~-g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
|+++|||||++++++|+++|+ +.+++.+.++..+.+..+|++.+++.+|++++++|++
T Consensus 158 ~l~~glVDel~l~iaP~i~G~~~~~~~~~~~~~~~~~~~~l~~~~~~~~g~d~~l~~~~ 216 (218)
T COG1985 158 FLEAGLVDELLLYIAPKILGGSARTLVGGLGFLSLADAPKLELLRVEQVGDDVLLEYRV 216 (218)
T ss_pred HHHcCCCcEEEEEEechhhcCCCCccccCccccchhhcccceEeeEEEECCeEEEEEEE
Confidence 999999999999999999999 6899999988888888999999999999999999974
No 7
>PRK05625 5-amino-6-(5-phosphoribosylamino)uracil reductase; Validated
Probab=100.00 E-value=5.6e-43 Score=315.96 Aligned_cols=208 Identities=30% Similarity=0.401 Sum_probs=188.2
Q ss_pred cceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCccc-CCC-CCCCCCeEEEEcCC
Q psy14502 142 IPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNV-RSI-KTSHQPYRIVIDSY 219 (352)
Q Consensus 142 rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~-r~~-~~~~~p~~vvv~~~ 219 (352)
||||++++|+||||+||..+|.+ |+++++++.++|++|+.+||||+|++|+++|+|.+++ |.. +...+|.+||+|++
T Consensus 2 rP~v~~k~a~SlDG~Ia~~~g~~-~it~~~~~~~~~~lR~~~DaiLvG~~T~~~d~p~l~~~R~~~~~~~~P~~vVld~~ 80 (217)
T PRK05625 2 RPYVIVNAAMSADGKLATKTRYS-RISGPEDFDRVHELRAEVDAVMVGIGTVLADDPSLTVHRYAAGKPENPIRVVVDSS 80 (217)
T ss_pred CCEEEEeeEecCCCceeCCCCCC-CcCCHHHHHHHHHHHHHCCEEEEccceEEccCCcceeeeccCCCCCCCEEEEECCC
Confidence 89999999999999999999999 9999999999999999999999999999999999999 765 33459999999999
Q ss_pred CCCCCCCcccc-CCceEEEEcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHH
Q psy14502 220 LRIDPFFRVLK-GGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297 (352)
Q Consensus 220 ~~~~~~~~~~~-~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~ 297 (352)
+++|++.++|+ ..++||+|++. +.++...+++.|++++.+++ +.+|+.++++.|+++|+++||||||++|+++|++
T Consensus 81 ~~l~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~~~~v~~~~~--~~~dl~~~l~~L~~~g~~~vlveGG~~l~~~fl~ 158 (217)
T PRK05625 81 ARTPPDARILDGPAKTIVAVSEAAPSEKVEELEKKGAEVIVAGG--ERVDLPDLLEDLYERGIKRLMVEGGGTLIWSMFK 158 (217)
T ss_pred CCCCCcccccCCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCC--CCcCHHHHHHHHHHCCCCEEEEecCHHHHHHHHH
Confidence 99999989998 67899998765 45677888999999887653 3689999999999999999999999999999999
Q ss_pred cCCCcEEEEEEeceeec--CCCCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 298 EGCVDELLLYISPILIG--EAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 298 ~gLvDEi~l~i~P~ilG--~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
+|||||++++++|+++| ++.++|++.++..+....+|++.+++.++++++++|++
T Consensus 159 ~~LvDel~l~i~P~ilG~~~g~~~~~~~~~~~~~~~~~l~l~~~~~~~~~~~l~y~~ 215 (217)
T PRK05625 159 EGLVDEVRVTVGPKIIGGKDAPTLADGEGFIEEEDPLKLELAKVCRCDEGVVLTYKV 215 (217)
T ss_pred CCCCcEEEEEEcCeeecCCCCCCccCCCCcCccccccccEEeEEEEECCEEEEEEEE
Confidence 99999999999999999 67999987655555667899999999999999999974
No 8
>TIGR01508 rib_reduct_arch 2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1'-reductase, archaeal. in riboflavin biosynthesis is reduced first, and then deaminated, in both Archaea and Fungi, opposite the order in Bacteria. The subsequent deaminase is not presently known and is not closely homologous to the deaminase domain (3.5.4.26) fused to the reductase domain (1.1.1.193) similar to this protein but found in most bacteria.
Probab=100.00 E-value=1e-42 Score=312.25 Aligned_cols=205 Identities=35% Similarity=0.470 Sum_probs=184.7
Q ss_pred ceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCC
Q psy14502 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI 222 (352)
Q Consensus 143 P~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~ 222 (352)
|||++|+|+|+||+||..+|++ ||++++++.++|++|+.+||||+|++|+.+|||.|++|.+...++|++||+|+++++
T Consensus 1 P~V~lk~A~SlDGkia~~~g~~-~it~~~~r~~~h~lRa~~DaIlvG~~Tv~~D~P~L~~r~~~~~~~P~rvVld~~~~~ 79 (210)
T TIGR01508 1 PYVIVNVAMSLDGKLATINRDS-RISCEEDLIRVHEIRAEVDAIMVGIGTVLADDPRLTVKKIKSDRNPVRVVVDSKLRV 79 (210)
T ss_pred CEEEEEEeecCcccccCCCCCc-CcCCHHHHHHHHHHHHHCCEEEECcCeEEecCCcccccCcccCCCCEEEEECCCCCC
Confidence 9999999999999999999995 699999999999999999999999999999999999997633579999999999999
Q ss_pred CCCCcccc-CCceEEEEcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCC
Q psy14502 223 DPFFRVLK-GGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300 (352)
Q Consensus 223 ~~~~~~~~-~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gL 300 (352)
|.+.++|+ ..++||+|++. +.++...+++.|++++.+++ +++|+.++++.|+++|+++|+||||++|+++|+++||
T Consensus 80 ~~~~~~~~~~~~~~v~t~~~~~~~~~~~l~~~gv~vi~~~~--~~~dl~~~l~~L~~~g~~~vlveGG~~l~~~fl~~~L 157 (210)
T TIGR01508 80 PLNARILNKDAKTIIATSEDEPEEKVEELEDKGVEVVKFGE--GRVDLKKLLDILYDKGVRRLMVEGGGTLIWSLFKENL 157 (210)
T ss_pred CCcchhhcCCCCEEEEEcCCCCHHHHHHHHHCCCEEEEeCC--CCcCHHHHHHHHHHCCCCEEEEeeCHHHHHHHHHCCC
Confidence 99999998 67899998765 45667788899999887753 3689999999999999999999999999999999999
Q ss_pred CcEEEEEEeceeecC--CCCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEE
Q psy14502 301 VDELLLYISPILIGE--AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351 (352)
Q Consensus 301 vDEi~l~i~P~ilG~--g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~ 351 (352)
|||++++++|+++|+ +.++|.+.++..+ ...+|++.+++.++++++++|+
T Consensus 158 vDel~l~i~P~ilG~~~~~~~~~~~~~~~~-~~~~l~l~~~~~~~~~~~~~~~ 209 (210)
T TIGR01508 158 VDEISVYIAPKIFGGRDAPTYVDGEGFKTE-DCPKLELKNFYRLGEGIVLEFK 209 (210)
T ss_pred CcEEEEEEcCEEEcCCCCcCccCCCCcCcc-cCccceEeeEEEECCcEEEEEE
Confidence 999999999999995 4777776555545 5679999999999999999886
No 9
>TIGR00227 ribD_Cterm riboflavin-specific deaminase C-terminal domain. Eubacterial riboflavin-specific deaminases have a zinc-binding domain recognized by the dCMP_cyt_deam model toward the N-terminus and this domain toward the C-terminus. Yeast HTP reductase, a riboflavin-biosynthetic enzyme, and several archaeal proteins believed related to riboflavin biosynthesis consist only of this domain and lack the dCMP_cyt_deam domain.
Probab=100.00 E-value=4e-42 Score=310.18 Aligned_cols=209 Identities=42% Similarity=0.599 Sum_probs=189.1
Q ss_pred CcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCC--CCCCeEEEEcC
Q psy14502 141 GIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKT--SHQPYRIVIDS 218 (352)
Q Consensus 141 ~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~--~~~p~~vvv~~ 218 (352)
+||||++++|+||||+||.++|.+.|+++++++.++|++|+.+||||+|++|++.|+|.+++||++. .++|.+||+|+
T Consensus 1 ~rP~v~~~~a~SlDG~ia~~~g~~~wi~~~~~~~~~~~lr~~~DailvG~~T~~~d~p~l~~r~~~~~~~~~P~~vv~~~ 80 (216)
T TIGR00227 1 GRPYVILKYAMSLDGKIATASGESSWITSEEARRDVHQLRAQSDAILVGSGTVLADDPRLTVRWVELDELRNPVRVVLDS 80 (216)
T ss_pred CCCEEEEEEEEcCCCCeeCCCCcccCcCCHHHHHHHHHHHhHcCEEEECcCeEeccCCcceeeccCcccCCCCeEEEECC
Confidence 5899999999999999999999999999999999999999999999999999999999999998743 47999999999
Q ss_pred CCCCCCCCcccc-CCceEEEEcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHH
Q psy14502 219 YLRIDPFFRVLK-GGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALI 296 (352)
Q Consensus 219 ~~~~~~~~~~~~-~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl 296 (352)
+++++...++|+ ..++||+|+.. ...+...+...|++++.+++. ++|+.++++.|+++|+++|+||||++|+++|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~~~~~~g~~~i~~~~~--~~dl~~~l~~L~~~g~~~llveGG~~L~~~fl 158 (216)
T TIGR00227 81 QLRVPPTARLLNDDAPTWVATTEPADEEKVKELEDFGVEVLVLETK--RVDLKKLMEILYEEGINSVMVEGGGTLNGSLL 158 (216)
T ss_pred CCCCCcccccccCCCCEEEEEcCCCCHHHHHHHHHCCcEEEECCCC--CcCHHHHHHHHHHcCCCEEEEeeCHHHHHHHH
Confidence 999999888888 66788888765 455566788889998877532 67999999999999999999999999999999
Q ss_pred HcCCCcEEEEEEeceeecC--CCCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEE
Q psy14502 297 LEGCVDELLLYISPILIGE--AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351 (352)
Q Consensus 297 ~~gLvDEi~l~i~P~ilG~--g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~ 351 (352)
++|||||++|+++|+++|+ +.++|.+.++..+....+|++++++.++++++++|+
T Consensus 159 ~~~LvDel~l~i~P~ilG~~~g~~~~~~~~~~~~~~~~~l~l~~~~~~g~~v~~~~~ 215 (216)
T TIGR00227 159 KEGLVDELIVYIAPKLLGGRDAPTLVDGEGFQKMADAPNLELKEIYQIGEDIVLTAK 215 (216)
T ss_pred HCCCCCEEEEEECchhhCCCCCcCccCCCCccCHhhcccceeeeEEEECCeEEEEEe
Confidence 9999999999999999995 688888776766777789999999999999999997
No 10
>PRK14059 hypothetical protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=305.74 Aligned_cols=207 Identities=24% Similarity=0.290 Sum_probs=179.6
Q ss_pred cccCcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCC----------CC
Q psy14502 138 MQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSI----------KT 207 (352)
Q Consensus 138 ~~~~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~----------~~ 207 (352)
+..+||||++|+|+||||+|+ .+|.+.||+++.++.++|++|+.+||||+|++|+++|||.| +|.. +.
T Consensus 26 ~~~~rP~V~lk~A~SlDGkia-~~g~s~~It~~~~r~~~h~lRa~~DAIlVG~~Tv~~DnP~L-~r~~~~~~~~R~~~g~ 103 (251)
T PRK14059 26 DGLDRPWLRANFVTSLDGAAT-VDGRSGGLGGPADRRVFGLLRALADVVVVGAGTVRAENYGG-VRLSAAARQQRQARGQ 103 (251)
T ss_pred ccCCCCeEEEEEEEcCccccc-CCCCCcCcCCHHHHHHHHHHHHHCCEEEEchhhhhhcCccc-cccCHHHHHHHHhcCC
Confidence 578899999999999999998 99999999999999999999999999999999999999999 4432 23
Q ss_pred CCCCeEEEEcCCCCCCCCCcccc--CCceEEEEcCC-ChhhHHHHHhC--CcEEEEecCCCCCCCHHHHHHHHHhCCCCE
Q psy14502 208 SHQPYRIVIDSYLRIDPFFRVLK--GGGSCIFTATD-LPMKRKILEDL--GHEVIVLPNNLGKVDLQAVIIELGKRKINE 282 (352)
Q Consensus 208 ~~~p~~vvv~~~~~~~~~~~~~~--~~~~~v~t~~~-~~~~~~~l~~~--g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~ 282 (352)
.++|++||+|+++++|++.++|+ ..++||+|++. +..+...+... |++++..++ +..|+.+++++|+++|+++
T Consensus 104 ~~~P~~vVld~~~~lp~~~~lf~~~~~~~iv~t~~~~~~~~~~~l~~~~~gv~vi~~~~--~~~dl~~~l~~L~~~g~~~ 181 (251)
T PRK14059 104 AEVPPIAVVSRSGDLDPDSRLFTETEVPPLVLTCAAAAADRRRRLAGLAEVADVVVAGP--DTVDLAAAVAALAARGLRR 181 (251)
T ss_pred CCCCcEEEecCCcCCCccchhhccCCCCeEEEEcCCCCHHHHHHHhhccCCcEEEECCC--CCCCHHHHHHHHHhCCCCE
Confidence 46899999999999999999997 56899998765 44555555443 788876643 3689999999999999999
Q ss_pred EEEeecHHHHHHHHHcCCCcEEEEEEeceeecCC-CCCCCCCCCCCcccccCceEeEEEEEcC-cEEEEEEC
Q psy14502 283 LHIEAGYQLNTALILEGCVDELLLYISPILIGEA-YNMFTLPPHYSLDKKIKLKFHEIQKIGP-DIRILARF 352 (352)
Q Consensus 283 i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~g-~~lf~~~~~~~~~~~~~l~l~~~~~~g~-~v~l~y~~ 352 (352)
|+||||+.++++|+++|||||++++++|+++|++ .++|.+++ ....+|+|.+++.+++ .++++|++
T Consensus 182 vlveGG~~l~~~fl~~~LvDel~l~i~P~ilG~g~~~~f~~~~----~~~~~l~L~~~~~~~~g~v~l~Y~~ 249 (251)
T PRK14059 182 ILCEGGPTLLGQLLAADLVDELCLTIAPVLAGGVARRIVTGPG----QAPTRMRLAHVLTDDDGYLFLRYVR 249 (251)
T ss_pred EEEechHHHHHHHHHcCCCeEEEEEEccEEECCCCcccCCCCC----CCCcCeEEEEEEEcCCCEEEEEEEe
Confidence 9999999999999999999999999999999999 88887642 3457999999999876 66788863
No 11
>PF01872 RibD_C: RibD C-terminal domain; InterPro: IPR002734 This domain is found in the C terminus of the bifunctional deaminase-reductase of Escherichia coli, Bacillus subtilis and other bacteria in combination with IPR002125 from INTERPRO that catalyses the second and third steps in the biosynthesis of riboflavin, i.e., the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate (deaminase) and the subsequent reduction of the ribosyl side chain (reductase) []. The domain is also present in some HTP reductases from archaea and fungi.; GO: 0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity, 0009231 riboflavin biosynthetic process, 0055114 oxidation-reduction process; PDB: 3KY8_B 3KGY_B 2GD9_B 3JTW_B 2XW7_B 2D5N_B 2B3Z_A 3EX8_B 2AZN_A 2P4G_A ....
Probab=100.00 E-value=1.1e-36 Score=271.58 Aligned_cols=189 Identities=31% Similarity=0.450 Sum_probs=167.2
Q ss_pred ceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCC--------CCCeEE
Q psy14502 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTS--------HQPYRI 214 (352)
Q Consensus 143 P~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~--------~~p~~v 214 (352)
|||++++++|+||||+.++++..|++++.+..+++++|+.+|++|+|++|++.++|.++.++.+.. ++|.++
T Consensus 1 P~v~~~~a~SlDG~ia~~~~~~~~~~~~~~~~~~~~l~~~~dail~G~~T~~~~~~~~~~~~~~~~~~~~~~~~~~p~~v 80 (200)
T PF01872_consen 1 PKVILKMAMSLDGKIAGPDGDSGWLSGDEDREFLHELRSEADAILVGRNTVRADNPSLTVRWPGDPPPRERGRAKQPPKV 80 (200)
T ss_dssp -EEEEEEEEETTSEESSTTSCGCTSSSHHHHHHHHHHHHHCSEEEEEHHHHHHHTHHTSSHSSTSSCHHCTTCHSSSEEE
T ss_pred CEEEEEEeeccCcCEECCCCCccCCCCHHHHHHHHHHHhhCCEEEeccchhhhcCccccccCccccchhhhhhccCCeEE
Confidence 899999999999999999999999999999999999999999999999999999998888877554 799999
Q ss_pred EEcCCCCCCCCCcccc-CCceEEEEcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHH
Q psy14502 215 VIDSYLRIDPFFRVLK-GGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLN 292 (352)
Q Consensus 215 vv~~~~~~~~~~~~~~-~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~ 292 (352)
|+|++++++++.++|+ ..+++|+|++. ..++...++ + ..|+.+++++|+++|+++|+++||++++
T Consensus 81 V~s~~~~~~~~~~~~~~~~~~~v~~s~~~~~~~~~~l~-----v--------~~dl~~~l~~L~~~g~~~i~v~GG~~l~ 147 (200)
T PF01872_consen 81 VVSRSLKLPPDARLFNDDKPVLVITSEKAPDEYLERLR-----V--------RVDLEEALRRLKERGGKDILVEGGGSLN 147 (200)
T ss_dssp EEESTCCTTTTCCCCSSSSSEEEEEESTSSHHHHHHHH-----E--------SEHHHHHHHHHHHTTTSEEEEEEHHHHH
T ss_pred EEecccccccccccccCCCceEEEeecccccccccceE-----E--------ecCHHHHHHHHHhcCCCEEEEechHHHH
Confidence 9999999999999888 56888888876 556666666 1 3699999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEEEeceeecC-CCCCCCCCCCCCcccccCceEeEEEEEcCcEEE
Q psy14502 293 TALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRI 348 (352)
Q Consensus 293 ~~fl~~gLvDEi~l~i~P~ilG~-g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l 348 (352)
++|+++|||||++|+|+|+++|+ +.++|++..+.. .+|++++++.+++++++
T Consensus 148 ~~~l~~gLvDEl~l~i~Pv~lG~~~~~lf~~~~~~~----~~l~l~~~~~~~~~vv~ 200 (200)
T PF01872_consen 148 GSFLRAGLVDELSLTIAPVLLGGGGPPLFDGGSPRS----LRLELVSVRTFGNGVVL 200 (200)
T ss_dssp HHHHHTT--SEEEEEEESEE-SSTSEESSTSSTSSS----EEEEEEEEEEETTEEEE
T ss_pred HHHHhCCCCCEEEEEEeeEEeCCCCCCCCCCCCCcc----cceEEEEEEEeCCcEEC
Confidence 99999999999999999999999 799998864322 68999999999999875
No 12
>cd01284 Riboflavin_deaminase-reductase Riboflavin-specific deaminase. Riboflavin biosynthesis protein RibD (Diaminohydroxyphosphoribosylaminopyrimidine deaminase) catalyzes the deamination of 2,5-diamino-6-ribosylamino-4(3H)-pyrimidinone 5'-phosphate, which is an intermediate step in the biosynthesis of riboflavin.The ribG gene of Bacillus subtilis and the ribD gene of E. coli are bifunctional and contain this deaminase domain and a reductase domain which catalyzes the subsequent reduction of the ribosyl side chain.
Probab=100.00 E-value=5.4e-33 Score=224.63 Aligned_cols=113 Identities=50% Similarity=0.888 Sum_probs=106.1
Q ss_pred CHHHHHHHhhc-CCCCCCCcEEEEEEe-CCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCc
Q psy14502 1 MTLALQQAKLS-INSSPNPRVGCVIVK-EKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTP 78 (352)
Q Consensus 1 m~~a~~~a~~~-~~~~~~p~vgaviv~-~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~ 78 (352)
|++|+++|+++ ..+.++++||||||+ ||+||++|+|...++.|||++||+++.++ .++|+|||+|+|||+++|+||
T Consensus 1 m~~al~~A~~~~~~~~~~~pvGaviv~~~g~iv~~g~n~~~~~~HAE~~ai~~a~~~--~l~g~tly~TlEPC~~~~~~~ 78 (115)
T cd01284 1 MRRALELAEKGRGLTSPNPPVGCVIVDDDGEIVGEGYHRKAGGPHAEVNALASAGEK--LARGATLYVTLEPCSHHGKTP 78 (115)
T ss_pred CHHHHHHHHhcccccCCCCCEEEEEEeCCCeEEEEecCCCCCcccHHHHHHHHHhhc--CCCCeEEEEeCCCCCCCCCch
Confidence 89999999998 667778889999998 59999999999999999999999999654 789999999999999999999
Q ss_pred chHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCC
Q psy14502 79 PCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAG 115 (352)
Q Consensus 79 ~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~g 115 (352)
||+.+|+|+||++|||+.+||++...++++++|+++|
T Consensus 79 mC~~ai~~~gi~~Vv~g~~~~~~~~~~~g~~~l~~~g 115 (115)
T cd01284 79 PCVDAIIEAGIKRVVVGVRDPNPLVAGKGAERLRAAG 115 (115)
T ss_pred HHHHHHHHHCcCEEEEEecCCCcccccHHHHHHHHCc
Confidence 9999999999999999999999888888999999876
No 13
>PRK10860 tRNA-specific adenosine deaminase; Provisional
Probab=99.97 E-value=8.6e-32 Score=232.33 Aligned_cols=132 Identities=29% Similarity=0.484 Sum_probs=116.6
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCCC----CCCcHHHHHHHHHHhcC--CCCCCeEEEEeCCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP----GGNHAEIDALLNAAAQG--YDVYNSTVYITLEPCSYF 74 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~--~~~~~~~ly~t~ePC~~~ 74 (352)
|++|+++|+++...+. ++||||||++|+||++|+|... ++.|||++||+++.++. ..+.|||||||+|||
T Consensus 17 m~~A~~~A~~a~~~g~-~pvGAVIV~~g~IIa~g~N~~~~~~d~~~HAEi~Ai~~a~~~~~~~~l~g~tlY~TlEPC--- 92 (172)
T PRK10860 17 MRHALTLAKRAWDERE-VPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVLQNYRLLDATLYVTLEPC--- 92 (172)
T ss_pred HHHHHHHHHHhhccCC-CCEEEEEEeCCEEEEEeeCCCCCCCCCccCHHHHHHHHHHHhcCCCCcCCcEEEeeCCCc---
Confidence 7899999999855554 4599999999999999999864 46899999999997653 367899999999999
Q ss_pred CCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCC----Ceeeecchhhhhhhheeccccccc
Q psy14502 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAG----ISVKQGLMQKEAYEINIGFFSRMQ 139 (352)
Q Consensus 75 g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~g----i~v~~~~~~~~~~~l~~~f~~~~~ 139 (352)
+||+++|+|+||++||||.+||+....+.+++.+++.+ ++|+.+++++||.+|++.||.+.+
T Consensus 93 ---~MC~~aii~agI~rVvyg~~d~~~g~~g~~~~~l~~~~~~~~i~v~~gv~~~e~~~ll~~ff~~~~ 158 (172)
T PRK10860 93 ---VMCAGAMVHSRIGRLVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGVLADECAALLSDFFRMRR 158 (172)
T ss_pred ---HHHHHHHHHhCCCEEEEeecCCCCCCCCcHHHHhhcccCCCCCEEEeCccHHHHHHHHHHHHHHHh
Confidence 59999999999999999999999887777889898766 789889999999999999998754
No 14
>COG0590 CumB Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis]
Probab=99.96 E-value=2.6e-29 Score=213.18 Aligned_cols=129 Identities=34% Similarity=0.516 Sum_probs=115.7
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCC----CCCCcHHHHHHHHHHhcC--CCCCCeEEEEeCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS----PGGNHAEIDALLNAAAQG--YDVYNSTVYITLEPCSY 73 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~----~~~~HaE~~a~~~~~~~~--~~~~~~~ly~t~ePC~~ 73 (352)
|+.|+.+|+++...+..| ||||||+ +|+|++.|+|.. +++.|||+.||+++.+.. ..++|||||||+|||
T Consensus 12 m~~al~~A~~a~~~ge~P-vGaviV~~~~~ii~~~~N~~~~~~dptaHAEi~air~a~~~~~~~~l~~~tlyvT~EPC-- 88 (152)
T COG0590 12 MREALKEAKKAGDEGEVP-VGAVIVDADGEIIARGHNRREEDNDPTAHAEILAIRAAAETLGNYRLKDCTLYVTLEPC-- 88 (152)
T ss_pred HHHHHHHHHHHHhcCCCC-EEEEEEcCCCCEEEEecCccccCCCccccHHHHHHHHHHHhhCCCCcCCcEEEEecCCH--
Confidence 789999999998555555 9999999 999999999986 478999999999998874 478999999999999
Q ss_pred CCCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhh----CCCeeeecchhhhhhhheecccc
Q psy14502 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS----AGISVKQGLMQKEAYEINIGFFS 136 (352)
Q Consensus 74 ~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~----~gi~v~~~~~~~~~~~l~~~f~~ 136 (352)
|||++||+||||++||||.++|+....+...+++.+ +.++|..+++++||..+++.||.
T Consensus 89 ----~MCagAi~~ari~rvvyga~~~~~ga~g~~~~i~~~~~~~~~~~v~~g~~~~e~~~~l~~f~~ 151 (152)
T COG0590 89 ----PMCAGAIIWARIDRVVYGASDPKTGAIGSLLDILKDPRLNHRVEVYGGILEEECSALLSEFFR 151 (152)
T ss_pred ----HHHHHHHHHhCCCeEEEecCCCCcCccCcccccccCCCCCcCeEEecchhhHHHHHHHHHHHh
Confidence 599999999999999999999998877778888887 45788889999999999999975
No 15
>PHA02588 cd deoxycytidylate deaminase; Provisional
Probab=99.96 E-value=4.2e-28 Score=208.77 Aligned_cols=121 Identities=35% Similarity=0.516 Sum_probs=102.6
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCCC------------------------------------CCCcH
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP------------------------------------GGNHA 44 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~~------------------------------------~~~Ha 44 (352)
|++|+++|+++. .+..+||||||++|+||++|||+.+ .+.||
T Consensus 7 M~~A~~~A~~s~--~~~~~VGAVIV~~~~Iis~GyNg~p~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HA 84 (168)
T PHA02588 7 LQIAYLVSQESK--CVSWKVGAVIEKNGRIISTGYNGTPAGGVNCCDHANEQGWLDDEGKLKKEHRPEHSAWSSKNEIHA 84 (168)
T ss_pred HHHHHHHHHhcC--CCCCCEEEEEEECCEEEEEEeCCCCcCCcccccccccccccccccccccccccccccccCCCCccH
Confidence 789999999973 3566799999999999999999853 36799
Q ss_pred HHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchh
Q psy14502 45 EIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQ 124 (352)
Q Consensus 45 E~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~ 124 (352)
|++||.++.+++..+.|+|||||+||| |||+.+|+|+||++|||+..++.. ..++.++|+++||+|+. +..
T Consensus 85 E~nAi~~a~~~~~~~~g~tLYvTlePC------~~Ca~aI~~~gI~rVvy~~~~~~~--~~~~~~~L~~~Gi~v~~-~~~ 155 (168)
T PHA02588 85 ELNAILFAARNGISIEGATMYVTASPC------PDCAKAIAQSGIKKLVYCEKYDRN--GPGWDDILRKSGIEVIQ-IPK 155 (168)
T ss_pred HHHHHHHHhhcCCCCCCcEEEEeCCCc------HHHHHHHHHhCCCEEEEeeccCCC--cHHHHHHHHHCCCEEEE-eCH
Confidence 999999998877789999999999999 699999999999999999864332 34589999999999986 566
Q ss_pred hhhhhhee
Q psy14502 125 KEAYEINI 132 (352)
Q Consensus 125 ~~~~~l~~ 132 (352)
+++.+++.
T Consensus 156 ~~~~~~~~ 163 (168)
T PHA02588 156 EELNKLNW 163 (168)
T ss_pred HHHHhhhh
Confidence 67666543
No 16
>TIGR02571 ComEB ComE operon protein 2. This protein is found in the ComE operon for "late competence" as characterized in B. subtilis. Proteins in this family contain homology to a cytidine/deoxycytidine deaminase domain family (pfam00383), and may carry out this activity.
Probab=99.95 E-value=3.6e-27 Score=199.36 Aligned_cols=109 Identities=35% Similarity=0.518 Sum_probs=96.6
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCCC-------------------CCCcHHHHHHHHHHhcCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP-------------------GGNHAEIDALLNAAAQGYDVYN 61 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~~-------------------~~~HaE~~a~~~~~~~~~~~~~ 61 (352)
|++|+++|+++ +.++++||||||+||+||++|||... .+.|||++||.++++.+..++|
T Consensus 10 M~~A~~~A~rs--~~~~~~VGAVIV~d~~IIs~GyN~~~~g~~~~~~~~~~~~~~~~~~~~HAE~nAI~~a~~~~~~l~g 87 (151)
T TIGR02571 10 MAQSHLLALRS--TCTRLSVGATIVRDKRIIAGGYNGSVAGGVHCIDEGCYVVDGHCVRTIHAEMNALLQCAKFGVSTEG 87 (151)
T ss_pred HHHHHHHHHhc--CCCCCCEEEEEEECCEEEEEEECCCCCCCCccccccccccccccCCccCHHHHHHHHHHhcCCCcCC
Confidence 78999999985 56777899999999999999999963 2479999999999887778899
Q ss_pred eEEEEeCCCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 62 ~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
+|||||+|||. ||+++|+|+||++|||+..+++. ..+.++|+++||+|+.
T Consensus 88 ~tlYvT~ePC~------~Ca~ai~~agI~~Vvy~~~~~~~---~~~~~~l~~~gi~v~~ 137 (151)
T TIGR02571 88 AEIYVTHFPCL------QCTKSIIQAGIKKIYYAQDYHNH---PYAIELFEQAGVELKK 137 (151)
T ss_pred cEEEEeCCCcH------HHHHHHHHhCCCEEEEccCCCCc---HHHHHHHHHCCCEEEE
Confidence 99999999994 99999999999999999766553 3478999999999986
No 17
>cd01285 nucleoside_deaminase Nucleoside deaminases include adenosine, guanine and cytosine deaminases. These enzymes are Zn dependent and catalyze the deamination of nucleosides. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. The functional enzyme is a homodimer. Cytosine deaminase catalyzes the deamination of cytosine to uracil and ammonia and is a member of the pyrimidine salvage pathway. Cytosine deaminase is found in bacteria and fungi but is not present in mammals; for this reason, the enzyme is currently of interest for antimicrobial drug design and gene therapy applications against tumors. Some members of this family are tRNA-specific adenosine deaminases that generate inosine at the first position of their anticodon (position 34) of specific tRNAs; this modification is thought to enlarge the codon recognition capacity during protei
Probab=99.92 E-value=1.1e-24 Score=175.41 Aligned_cols=95 Identities=36% Similarity=0.527 Sum_probs=84.2
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCC--CCCCeEEEEeCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGY--DVYNSTVYITLEPCSY 73 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~--~~~~~~ly~t~ePC~~ 73 (352)
|++|+++|+++...+ +++||||||+ +|+||++|+|... ++.|||++||+++.++.. .+.|++||+|+|||
T Consensus 1 m~~al~~a~~~~~~~-~~~vgaviv~~~~~ii~~g~n~~~~~~~~~~HAE~~ai~~~~~~~~~~~~~~~~ly~t~EPC-- 77 (109)
T cd01285 1 MRLAIELARKALAEG-EVPFGAVIVDDDGKVIARGHNRVEQDGDPTAHAEIVAIRNAARRLGSYLLSGCTLYTTLEPC-- 77 (109)
T ss_pred CHHHHHHHHHHHHcC-CCcEEEEEEeCCCEEEEEEeCCCCCCCCCcccHHHHHHHHHHHHhCCCccCCeEEEEeCCCh--
Confidence 899999999984444 5569999999 5999999999975 789999999999987643 58999999999999
Q ss_pred CCCCcchHHHHHHhCCcEEEEEeeCCCCC
Q psy14502 74 FGYTPPCTEALIKSGIKKVIIAINDPNPL 102 (352)
Q Consensus 74 ~g~t~~C~~~i~~~gi~~vv~~~~~~~~~ 102 (352)
+||+++|+|+||++|||+.++|+..
T Consensus 78 ----~mC~~ai~~~gi~~Vvy~~~~~~~g 102 (109)
T cd01285 78 ----PMCAGALLWARIKRVVYGASDPKLG 102 (109)
T ss_pred ----HHHHHHHHHHCCCEEEEEecCCccc
Confidence 5999999999999999999998743
No 18
>cd01286 deoxycytidylate_deaminase Deoxycytidylate deaminase domain. Deoxycytidylate deaminase catalyzes the deamination of dCMP to dUMP, providing the nucleotide substrate for thymidylate synthase. The enzyme binds Zn++, which is required for catalytic activity. The activity of the enzyme is allosterically regulated by the ratio of dCTP to dTTP not only in eukaryotic cells but also in T-even phage-infected Escherichia coli, with dCTP acting as an activator and dTTP as an inhibitor.
Probab=99.92 E-value=9.4e-25 Score=181.13 Aligned_cols=93 Identities=45% Similarity=0.680 Sum_probs=83.9
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCCC-------------------------CCCcHHHHHHHHHHhc
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP-------------------------GGNHAEIDALLNAAAQ 55 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~~-------------------------~~~HaE~~a~~~~~~~ 55 (352)
|++|+++|+++ ..++++||||||++|+||++|||... ++.|||++||.++.++
T Consensus 5 m~~A~~~A~~s--~~~~~~VGAViv~~~~iI~~G~N~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~HAE~~Ai~~a~~~ 82 (131)
T cd01286 5 MAIARLAALRS--TCPRRQVGAVIVKDKRIISTGYNGSPSGLPHCAEVGCERDDLPSGEDQKCCRTVHAEQNAILQAARH 82 (131)
T ss_pred HHHHHHHHHHc--CCCCCCEEEEEEECCEEEEEeeCCCCCCCCCcccccccccccccccccccCCCCCHHHHHHHHHhHc
Confidence 78999999985 45678899999999999999999864 6799999999999888
Q ss_pred CCCCCCeEEEEeCCCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCC
Q psy14502 56 GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNP 101 (352)
Q Consensus 56 ~~~~~~~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~ 101 (352)
+..++++|||||+||| +||+.+|+|+||++|||+.+++..
T Consensus 83 ~~~~~~~tLyvT~ePC------~~C~~ai~~~gI~~Vvy~~~~~~~ 122 (131)
T cd01286 83 GVSLEGATLYVTLFPC------IECAKLIIQAGIKKVVYAEPYDDD 122 (131)
T ss_pred CCCcCCeEEEEecCcH------HHHHHHHHHhCCCEEEEeeccCcc
Confidence 7788999999999999 599999999999999999877763
No 19
>COG2131 ComEB Deoxycytidylate deaminase [Nucleotide transport and metabolism]
Probab=99.90 E-value=3e-23 Score=174.17 Aligned_cols=112 Identities=39% Similarity=0.604 Sum_probs=98.3
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCCCC--------------------------CCcHHHHHHHHHHh
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPG--------------------------GNHAEIDALLNAAA 54 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~~~--------------------------~~HaE~~a~~~~~~ 54 (352)
|+.|.-.|.+ ++.++..||||||+|++||++|||+.+. +.|||+|||.++++
T Consensus 13 m~~A~l~a~R--stc~r~~VGAvIvkd~rIiatGYNG~p~g~~~c~~~g~~~~~~~~~~~~~~~~r~vHAE~NAil~aa~ 90 (164)
T COG2131 13 MAIAELVALR--STCPRRQVGAVIVKDGRIIATGYNGAPSGEDHCIDRGCLRDKVVFVTTCGHCCRTLHAEQNAILQAAR 90 (164)
T ss_pred HHHHHHHHHH--ccCcccceeEEEEeCCeEEEeecCCCCcccCCcCccCceecccccccchhHHHHHHHHHHHHHHHHHh
Confidence 4555555555 8899999999999999999999999641 36999999999999
Q ss_pred cCCCCCCeEEEEeCCCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 55 QGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 55 ~~~~~~~~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
.+..++|+|+|+|+.||. +|+..|+++||++|||+.++++......+.++|+++||++..
T Consensus 91 ~g~~~~~atlYvt~~PC~------~Cak~Ii~aGIk~Vvy~~~Y~~~~~~~~s~~l~~~agv~~~~ 150 (164)
T COG2131 91 HGVGLEGATLYVTHFPCS------NCAKLIIQAGIKEVVYAEPYPTETVAPYSQELLEEAGVKVRQ 150 (164)
T ss_pred cCCCCCCcEEEEEecccH------HHHHHHHHhCceEEEeecCCCcchhhHHHHHHHHhCCceEEe
Confidence 999999999999999996 999999999999999999888865334578999999999975
No 20
>cd00786 cytidine_deaminase-like Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate.
Probab=99.89 E-value=5e-23 Score=161.92 Aligned_cols=89 Identities=35% Similarity=0.565 Sum_probs=80.4
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeC--CeEEEEeECCCC----CCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKE--KRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYF 74 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~--~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~ 74 (352)
|+.|+++|+++..+.++++|||+||++ |+++++|+|... ++.|||++||.++.+.+. ++++|||+|+|||.
T Consensus 1 m~~a~~~a~~a~~~~~~~pVGaviv~~~~g~ii~~g~n~~~~~~~~~~HAE~~ai~~a~~~~~-~~~~tly~tlePC~-- 77 (96)
T cd00786 1 MTEALKAADLGYAKESNFQVGACLVNKKDGGKVGRGCNIENAAYSMCNHAERTALFNAGSEGD-TKGQMLYVALSPCG-- 77 (96)
T ss_pred CHHHHHHHHhccCCCCCCCEEEEEEEeCCCCeEeeeEeccCCCCCCeeCHHHHHHHHHHHcCC-CCceEEEEECCChH--
Confidence 899999999985566777799999985 999999999875 789999999999977654 79999999999995
Q ss_pred CCCcchHHHHHHhCCcEEEEEe
Q psy14502 75 GYTPPCTEALIKSGIKKVIIAI 96 (352)
Q Consensus 75 g~t~~C~~~i~~~gi~~vv~~~ 96 (352)
||+++|+|+||++|||+.
T Consensus 78 ----mC~~ai~~~gi~~Vv~~~ 95 (96)
T cd00786 78 ----ACAQLIIELGIKDVIVVL 95 (96)
T ss_pred ----HHHHHHHHhCCCCEEEee
Confidence 999999999999999985
No 21
>PF00383 dCMP_cyt_deam_1: Cytidine and deoxycytidylate deaminase zinc-binding region; InterPro: IPR002125 Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion. Such a region is also found in other proteins [, ]: Yeast cytosine deaminase (3.5.4.1 from EC) (gene FCY1) which transforms cytosine into uracil. Mammalian apolipoprotein B mRNA editing protein, responsible for the postranscriptional editing of a CAA codon into a UAA (stop) codon in the APOB mRNA. Riboflavin biosynthesis protein ribG, which converts 2,5-diamino-6-(ribosylamino)-4(3H)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1H,3H)-pyrimidinedione 5'-phosphate. Bacillus cereus blasticidin-S deaminase (3.5.4.23 from EC), which catalyzes the deamination of the cytosine moiety of the antibiotics blasticidin S, cytomycin and acetylblasticidin S. Bacillus subtilis protein comEB. This protein is required for the binding and uptake of transforming DNA. B. subtilis hypothetical protein yaaJ. Escherichia coli hypothetical protein yfhC. Yeast hypothetical protein YJL035c. ; GO: 0008270 zinc ion binding, 0016787 hydrolase activity; PDB: 3MPZ_C 3R2N_C 1WKQ_A 1TIY_B 2B3J_C 2O7P_B 2OBC_A 2G6V_B 2D30_B 2D5N_B ....
Probab=99.85 E-value=1.6e-21 Score=155.11 Aligned_cols=89 Identities=40% Similarity=0.666 Sum_probs=76.4
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcC-CCCCCeEEEEeCCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQG-YDVYNSTVYITLEPCSYF 74 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~-~~~~~~~ly~t~ePC~~~ 74 (352)
|++|+++|+++. ..++++||||||+ +|++|+.|+|... +..|||++||.++.+.+ ..+.|++||+|+|||
T Consensus 8 m~~a~~~a~~s~-~~~~~~vgaviv~~~~~~i~~g~n~~~~~~~~~~HAE~~Ai~~~~~~~~~~~~~~~lyvt~ePC--- 83 (102)
T PF00383_consen 8 MRIAIELAKRSR-PCGNFPVGAVIVDPDGKIIATGYNGEPPGKNPTIHAEMNAIRKAARNGGSSLKGCTLYVTLEPC--- 83 (102)
T ss_dssp HHHHHHHHHTHB-TTTSSSEEEEEEETTTEEEEEEESBHHSTTGGTB-HHHHHHHHHHHTTSSGETTEEEEEEE--B---
T ss_pred HHHHHHHHHhcc-ccCCCCEEEEEEeccCccEEEEeeeeeeeccccccchhhhhhhhhhhccccccCcccccCCCCH---
Confidence 688999999986 6677779999999 9999999999864 46799999999999884 356899999999999
Q ss_pred CCCcchHHHHHHhCCcEEEEEe
Q psy14502 75 GYTPPCTEALIKSGIKKVIIAI 96 (352)
Q Consensus 75 g~t~~C~~~i~~~gi~~vv~~~ 96 (352)
+||+++|+++||+||||+.
T Consensus 84 ---~~C~~ai~~~gi~~vvy~~ 102 (102)
T PF00383_consen 84 ---GMCAMAIVHAGIKRVVYGT 102 (102)
T ss_dssp ---HHHHHHHHHHTSSEEEEEE
T ss_pred ---HHHHHHHHHHCcCeEEEeC
Confidence 4999999999999999984
No 22
>KOG1018|consensus
Probab=99.84 E-value=7.6e-21 Score=162.74 Aligned_cols=136 Identities=30% Similarity=0.462 Sum_probs=106.6
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCC----CCCCcHHHHHHHH---HHhc-C-CCCCCeEEEEeCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS----PGGNHAEIDALLN---AAAQ-G-YDVYNSTVYITLEP 70 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~----~~~~HaE~~a~~~---~~~~-~-~~~~~~~ly~t~eP 70 (352)
|..|+++|+++...+.+++||||+|+ +|+|++.|+|.. +++.|||+.||++ +.++ + ..++++|||||+||
T Consensus 15 m~~a~eea~ka~d~~~~~pvg~vlV~~~g~v~a~g~n~~~~~~d~t~HaE~~~I~~~~~~~~~~~~~~ls~~tlyvt~eP 94 (169)
T KOG1018|consen 15 MVEAVEEAKKALDEGDEVPVGAVLVHMDGKVLASGGNMVNEKKDPTAHAEVIAIREEEVMCKSLRTIDLSETTLYVTCEP 94 (169)
T ss_pred HHHHHHHHHhhccCCCCCceEEEEEeCCCeEEecccceecccCCcchhhHHHHHhhHHHHhhhcCceeccCCEEEEEecc
Confidence 78899999999777745669999999 999999999984 5789999999999 4433 2 47899999999999
Q ss_pred CCCCCCCcchHHHHHHhCCcEEEEEeeCCCCCCcch---H-HHHhhhCCCeeee--cchhhhhhhheeccccccccCc
Q psy14502 71 CSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGK---G-VAQLISAGISVKQ--GLMQKEAYEINIGFFSRMQRGI 142 (352)
Q Consensus 71 C~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~---~-~~~l~~~gi~v~~--~~~~~~~~~l~~~f~~~~~~~r 142 (352)
| |||++||.|+||++||||...++....+. + ...|+..+.+++. ++...++..+.+.|..+...+.
T Consensus 95 c------~mC~gal~~~gv~~vv~G~~ne~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~~~~~~~~~~f~~~~n~~~ 166 (169)
T KOG1018|consen 95 C------PMCAGALAQSGVKRVVFGASNERFGGIGFVLRGNKDFLKRLGASVISRDGIEKKEAQKLLIAFYVRDNPKD 166 (169)
T ss_pred c------HHHHHHHHHcCCCEEEEecccccccccceeeeehhhhhccCCcceEeccchhhHHhhhHHHhhccccccCC
Confidence 9 59999999999999999998877653221 1 2334456666654 5566666677777766655443
No 23
>cd00209 DHFR Dihydrofolate reductase (DHFR). Reduces 7,8-dihydrofolate to 5,6,7,8-tetrahydrofolate with NADPH as a cofactor. This is an essential step in the biosynthesis of deoxythymidine phosphate since 5,6,7,8-tetrahydrofolate is required to regenerate 5,10-methylenetetrahydrofolate which is then utilized by thymidylate synthase. Inhibition of DHFR interrupts thymidilate synthesis and DNA replication, inhibitors of DHFR (such as Methotrexate) are used in cancer chemotherapy. 5,6,7,8-tetrahydrofolate also is involved in glycine, serine, and threonine metabolism and aminoacyl-tRNA biosynthesis.
Probab=99.80 E-value=2.6e-18 Score=147.46 Aligned_cols=147 Identities=15% Similarity=0.128 Sum_probs=108.8
Q ss_pred EEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCC
Q psy14502 145 VRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDP 224 (352)
Q Consensus 145 V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~ 224 (352)
+++.+|+|+||+|+.+++ ..|.. +++...+.++. ..|++||||+||+...+ ..| +....+|++++...+.
T Consensus 1 i~~~~a~sldG~i~~~~~-~~W~~-~~d~~~f~~~~-~~~~ivmGR~Tye~~~~---~~~----~~~~~~V~S~~~~~~~ 70 (158)
T cd00209 1 ISLIVAVDENGVIGKDNK-LPWHL-PEDLKHFKKTT-TGNPVIMGRKTFESIPR---RPL----PGRTNIVLSRQLDYQD 70 (158)
T ss_pred CEEEEEECCCCceeCCCC-cCcCC-HHHHHHHHHHH-CCCeEEEChhhHhhCCC---cCC----CCCCEEEEccCCCcCC
Confidence 468899999999999887 77854 34444444433 55999999999986543 011 1233666676654331
Q ss_pred CCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEE
Q psy14502 225 FFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDEL 304 (352)
Q Consensus 225 ~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi 304 (352)
.. ++.++ . |+.+++++|+ .+.++|+|.||++++.+|+++ +||+
T Consensus 71 ~~--------------------------~~~~~-------~-~~~~~v~~lk-~~~~~I~v~GG~~l~~~~l~~--iDe~ 113 (158)
T cd00209 71 AE--------------------------GVEVV-------H-SLEEALELAE-NTVEEIFVIGGAEIYKQALPY--ADRL 113 (158)
T ss_pred CC--------------------------CeEEE-------C-CHHHHHHHHh-cCCCeEEEECcHHHHHHHHhh--CCEE
Confidence 10 11111 3 7999999999 777899999999999999999 9999
Q ss_pred EEEEeceeecCCCCCCCCCCCCCcccccCceEeE-EEEEcCc
Q psy14502 305 LLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHE-IQKIGPD 345 (352)
Q Consensus 305 ~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~-~~~~g~~ 345 (352)
++++.|+++ +|.++|+.. . ..+|+|.+ ++.++++
T Consensus 114 ~l~v~pv~~-~G~~~f~~~-----~-~~~l~l~~~~~~~~~~ 148 (158)
T cd00209 114 YLTRIHAEF-EGDTFFPEI-----D-ESEWELVSEEEVFEED 148 (158)
T ss_pred EEEEECCcc-cCCEECCCC-----C-chhcEEEEEEeecccC
Confidence 999999999 888998752 2 57899999 8888773
No 24
>COG0262 FolA Dihydrofolate reductase [Coenzyme metabolism]
Probab=99.75 E-value=5.6e-17 Score=140.19 Aligned_cols=148 Identities=21% Similarity=0.219 Sum_probs=110.6
Q ss_pred EEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCC
Q psy14502 145 VRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDP 224 (352)
Q Consensus 145 V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~ 224 (352)
|++.+|+|+||+|+. +|+..|. .+++.+++.+.-.... |||||+|++.-. ..|.+ -+.+..+|++++.+...
T Consensus 2 i~~i~A~s~dG~Ig~-~~~lpW~-~~~~~~~Fk~~t~~~~-viMGRkT~esl~----~~~~p-l~~r~~iV~sr~~~~~~ 73 (167)
T COG0262 2 IILIVAVSLDGVIGR-DNSLPWH-LPEDLAHFKATTLGKP-VIMGRKTYESLP----GEWRP-LPGRKNIVLSRNPDLKT 73 (167)
T ss_pred EEEEEEEcCCCeeec-CCCCCCC-ChhHHHHHHHhhCCCC-EEEccchhhhcc----ccCCC-CCCCeEEEEecCccccc
Confidence 688999999999997 8888998 5566666666544444 999999987443 11222 23445566666532222
Q ss_pred CCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEE
Q psy14502 225 FFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDEL 304 (352)
Q Consensus 225 ~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi 304 (352)
+ |. +.+ ..++.+++..+++...++|+|.||+.++++|+.++|+||+
T Consensus 74 e---------------------------~~-~~v------~~s~~~al~~~~~~~~~~i~IiGG~~l~~~~l~~~l~Del 119 (167)
T COG0262 74 E---------------------------GG-VEV------VDSIEEALLLLLKEEGEDIFIIGGGELYRQFLPAGLADEL 119 (167)
T ss_pred C---------------------------CC-EEE------eCCHHHHHHHHhhcCCCeEEEEcCHHHHHHHhccccccEE
Confidence 1 11 111 1388999999998768999999999999999999999999
Q ss_pred EEEEeceeecCCCCCCCCCCCCCcccccCceEeEEE
Q psy14502 305 LLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQ 340 (352)
Q Consensus 305 ~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~ 340 (352)
++++.|+.+|.|.++|+.. ....|+++.++
T Consensus 120 ~lt~ip~~lg~Gd~~Fp~~------~~~~~~~~~~~ 149 (167)
T COG0262 120 ILTIIPVLLGEGDTLFPEG------DPADWELVSSE 149 (167)
T ss_pred EEEEeeeeccCCCccCCCC------CccceEEeeee
Confidence 9999999999999998752 45688888887
No 25
>KOG3127|consensus
Probab=99.69 E-value=6.5e-17 Score=140.44 Aligned_cols=111 Identities=34% Similarity=0.513 Sum_probs=89.9
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCCC------------------------CCcHHHHHHHHHHhc
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSPG------------------------GNHAEIDALLNAAAQ 55 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~~------------------------~~HaE~~a~~~~~~~ 55 (352)
|+.|.-.|.+ +++|+..|||+||+ ++.||+.|||..+. ..|||+|||.+..
T Consensus 71 M~iA~LsA~R--SkDpntqVGaCiv~~~n~iVg~GYNgfP~gc~~~vfp~~~~~~~~~~~~k~~yv~HAE~NAi~~~~-- 146 (230)
T KOG3127|consen 71 MAIAFLSAKR--SKDPNTQVGACIVDRENRIVGTGYNGFPRGCSDDVFPWCKAALSTNLDLKYCYVVHAEENAILNKG-- 146 (230)
T ss_pred HHHHHHHHHh--ccCcccceeeEEEcCCCEEEEeccCCCcCCCCCCCCcccccccccCCCcceEEEeehHHHHHHHhC--
Confidence 4555555555 88999999988887 99999999998531 3799999999983
Q ss_pred CCCCCCeEEEEeCCCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCCC-CcchHHHHhhhCCCeeeec
Q psy14502 56 GYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPL-VSGKGVAQLISAGISVKQG 121 (352)
Q Consensus 56 ~~~~~~~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~-~~~~~~~~l~~~gi~v~~~ 121 (352)
.....+|++|+|+-||+ .|+..|+++||++|+|+..+--+. ..-.+...|..+|+++..-
T Consensus 147 ~~~~~~~~lYvtl~PC~------~Ca~liiq~GIkeV~~~~~~~~~k~~~~~s~~~l~~agv~~~q~ 207 (230)
T KOG3127|consen 147 RERVGGCSLYVTLCPCN------ECAKLIIQAGIKEVYYSSSYYVDKYADRASKRMLDLAGVTLRQF 207 (230)
T ss_pred ccccCCceEEEeecchH------HHHHHHHHhhhhheeeccccccchHHHHHHHHHHHhcCcceEEe
Confidence 34667899999999998 999999999999999998764222 2345778888999988763
No 26
>cd01283 cytidine_deaminase Cytidine deaminase zinc-binding domain. These enzymes are Zn dependent. The zinc ion in the active site plays a central role in the proposed catalytic mechanism, activating a water molecule to form a hydroxide ion that performs a nucleophilic attack on the substrate. Cytidine deaminases catalyze the deamination of cytidine to uridine and are important in the pyrimadine salvage pathway in many cell types, from bacteria to humans. This family also includes the apoBec proteins, which are a mammal specific expansion of RNA editing enzymes, and the closely related phorbolins, and the AID (activation-induced) enzymes.
Probab=99.53 E-value=1e-13 Score=112.12 Aligned_cols=93 Identities=25% Similarity=0.364 Sum_probs=79.1
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCCCCCeEEEEe-----CCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYIT-----LEP 70 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~~~~~~ly~t-----~eP 70 (352)
++.|++.++++.....+-+|||+|+. +|+|+ +|+|... .+.|||+.||.++.+.+.....+++|+| +||
T Consensus 1 ~~~a~~~~~~a~~~~~~~~vga~i~~~~g~i~-~G~n~e~~~~~~~~hAE~~ai~~~~~~~~~~~~~~i~vs~~~~~~sP 79 (112)
T cd01283 1 IEAALAAAEFAYAPYSNFTVGAALLTKDGRIF-TGVNVENASYGLTLCAERTAIGKAVSEGLRRYLVTWAVSDEGGVWSP 79 (112)
T ss_pred CHHHHHHHHhCcCCCCCCeEEEEEEECCCCEE-EeEEeecCCCCCCcCHHHHHHHHHHHcCCCceEEEEEEECCCCccCC
Confidence 35788888888444444459999998 79998 8999765 6889999999999887776779999999 999
Q ss_pred CCCCCCCcchHHHHHHhCCcEEEEEeeCCC
Q psy14502 71 CSYFGYTPPCTEALIKSGIKKVIIAINDPN 100 (352)
Q Consensus 71 C~~~g~t~~C~~~i~~~gi~~vv~~~~~~~ 100 (352)
| +||+.+|.+.++++++|...+++
T Consensus 80 C------~~C~~~l~~~~~~~v~~~~~~~~ 103 (112)
T cd01283 80 C------GACRQVLAEFLPSRLYIIIDNPK 103 (112)
T ss_pred C------HHHHHHHHHhCCCCeEEEEEcCC
Confidence 9 59999999999999999987766
No 27
>PTZ00164 bifunctional dihydrofolate reductase-thymidylate synthase; Provisional
Probab=99.29 E-value=1.2e-10 Score=116.48 Aligned_cols=156 Identities=15% Similarity=0.086 Sum_probs=109.9
Q ss_pred cceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhc------------cceEEEccccccccCCCcccCCCCCCC
Q psy14502 142 IPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR------------SCAILTGIGTVLKDNPRLNVRSIKTSH 209 (352)
Q Consensus 142 rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~------------~Dail~G~~T~~~d~p~l~~r~~~~~~ 209 (352)
.+.+.+.+|++.+|-|. .+|...| .-++|.+++.++-.. .+++||||+|++... . ...+. +
T Consensus 7 ~~~i~lIvA~~~n~~IG-~~g~LPW-~lpeDlk~Fk~~T~~~~~~~~~~~~~~~~~VIMGRkTyESip-~---~~rPL-p 79 (514)
T PTZ00164 7 LKDFSIVVAVTLKRGIG-IGNSLPW-HIPEDMKFFSKITTYVREEKYEKSPKKQNAVIMGRKTWESIP-K---KFRPL-K 79 (514)
T ss_pred CCCEEEEEEECCCCCee-CCCCCCc-CCHHHHHHHHHHhccccccccccccCCCcEEEEcHHHHHhhh-h---hcccc-C
Confidence 45567889999999996 6778888 678888888887652 689999999998652 1 01111 1
Q ss_pred CCeEEEEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC-CCCEEEEeec
Q psy14502 210 QPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAG 288 (352)
Q Consensus 210 ~p~~vvv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~-g~~~i~veGG 288 (352)
....+|++++....... ..++ +. .++.++++.|++. +.++|+|.||
T Consensus 80 ~R~nIVLSr~~~~~~~~-----~~v~----------------------v~------~sl~eal~~lk~~~~~~dI~VIGG 126 (514)
T PTZ00164 80 NRINVVLSRTLTEEEAD-----PGVL----------------------VF------GSLEDALRLLAEDLSIEKIFIIGG 126 (514)
T ss_pred CCeEEEEcCCCCcccCC-----CCEE----------------------Ee------CCHHHHHHHHhccCCCCcEEEEch
Confidence 22346666654321000 0011 11 3899999999974 6789999999
Q ss_pred HHHHHHHHHcCCCcEEEEEEeceeecCCCCCCCCCCCCCcccccCceEeE-EEEEcC
Q psy14502 289 YQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHE-IQKIGP 344 (352)
Q Consensus 289 ~~l~~~fl~~gLvDEi~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~-~~~~g~ 344 (352)
++++++|++++|+||++|++. ..+|+|.++|+.. ....|++++ ++.+.+
T Consensus 127 ~~Iy~~~L~~~lvDel~LTvI-~~~geGD~~FP~~------~~~~~~l~~~s~~~~~ 176 (514)
T PTZ00164 127 ASVYREALSANLLDKIYLTRV-NSEYECDVFFPKI------PESFFIVAIVSQTFST 176 (514)
T ss_pred HHHHHHHhcCCCCCEEEEEEE-EeccccCccCCCC------CchhcEEEEEEEeccC
Confidence 999999999999999999999 6778888888643 122466666 555543
No 28
>PRK00478 scpA segregation and condensation protein A/unknown domain fusion protein; Provisional
Probab=99.19 E-value=4.1e-10 Score=112.72 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=104.5
Q ss_pred EEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCC
Q psy14502 145 VRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDP 224 (352)
Q Consensus 145 V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~ 224 (352)
+.+.+|++.+|-|. .+|...|- -+++..++.+.-. .+++||||+|++.....+ +....+|+|++.....
T Consensus 2 i~lI~A~~~n~~IG-~~~~LPW~-~peDl~~Fk~~T~-~~tVVMGRkTyEsi~~~L--------p~R~niVlSr~~~~~~ 70 (505)
T PRK00478 2 IKLIWCEDLNFGIA-KNNQIPWK-IDEELNHFHQTTT-NHTIVMGYNTFQAMNKIL--------ANQANIVISKKHQREL 70 (505)
T ss_pred EEEEEEECCCCccc-CCCCCCCC-CHHHHHHHHHHhC-CCeEEEehHHHHhhhhcC--------CCCeEEEECCCCcccc
Confidence 56789999999996 68888885 6777666666543 389999999998542111 2233566665542211
Q ss_pred CCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEE
Q psy14502 225 FFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDEL 304 (352)
Q Consensus 225 ~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi 304 (352)
.. + .++.+ + . |+.++++. ...++|||.||++++.+|++. +||+
T Consensus 71 ~~----~--------------------~~v~v--~-----~-sl~~~L~~---~~~~dI~IIGG~~Ly~~~l~~--vDel 113 (505)
T PRK00478 71 KN----N--------------------NELFV--F-----N-DLKKLLID---FSNVDLFIIGGKKTIEQFIKY--ADQL 113 (505)
T ss_pred CC----C--------------------CCeEE--E-----C-CHHHHHHh---CCCCCEEEEChHHHHHHHHHh--CCEE
Confidence 00 0 01111 1 1 67777553 333689999999999999985 9999
Q ss_pred EEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEE
Q psy14502 305 LLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILAR 351 (352)
Q Consensus 305 ~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~ 351 (352)
+|++.|+.+|++.+ |. .+ ..+|++++.+.+++-+.++|+
T Consensus 114 ~lT~Ip~~~g~d~~-f~------~~-~~~~~Lv~~~~~~~~v~~~Y~ 152 (505)
T PRK00478 114 IISKLNADYKCDLF-VN------LN-YDDFSLVQTKEYDQFVVEYWE 152 (505)
T ss_pred EEEEeccccCCCCC-CC------CC-hhhheeeeeEEcCcEEEEEEE
Confidence 99999999999865 32 12 368999999999987777775
No 29
>PRK10769 folA dihydrofolate reductase; Provisional
Probab=99.10 E-value=1.8e-09 Score=92.43 Aligned_cols=140 Identities=13% Similarity=0.049 Sum_probs=96.2
Q ss_pred EEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCC
Q psy14502 145 VRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDP 224 (352)
Q Consensus 145 V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~ 224 (352)
+.+..|++.||-|. .+|...| .-++|.+++.++-. -.++||||+|++... + +.++ ...+|++++...
T Consensus 2 i~~I~A~~~~~~IG-~~~~lPW-~~~~D~~~Fk~~T~-~~~vIMGRkTyes~~-----~--plp~-r~~iVlSr~~~~-- 68 (159)
T PRK10769 2 ISLIAALAVDRVIG-MENAMPW-NLPADLAWFKRNTL-NKPVIMGRHTWESIG-----R--PLPG-RKNIVISSQPGT-- 68 (159)
T ss_pred EEEEEEECCCCcEe-cCCCcCc-CCHHHHHHHHHHhC-CCeEEEeHHHHHhhh-----h--hcCC-CcEEEECCCCCC--
Confidence 56788999999997 5777888 56888888887654 478999999998541 1 1122 235666664311
Q ss_pred CCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEE
Q psy14502 225 FFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDEL 304 (352)
Q Consensus 225 ~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi 304 (352)
. .++.++ . ++.++++.+++ .++|+|.||++++.+|++. +||+
T Consensus 69 ~--------------------------~~v~~~-------~-~l~~~l~~~~~--~~~I~viGG~~iy~~~l~~--~Del 110 (159)
T PRK10769 69 D--------------------------DRVTWV-------K-SVDEALAAAGD--VPEIMVIGGGRVYEQFLPK--AQRL 110 (159)
T ss_pred C--------------------------CCEEEE-------C-CHHHHHHHhcC--CCCEEEECcHHHHHHHHHH--CCEE
Confidence 0 011111 2 78888886543 4679999999999999987 9999
Q ss_pred EEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEE
Q psy14502 305 LLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKI 342 (352)
Q Consensus 305 ~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~ 342 (352)
+|++.|+-+.+. ..|+.. +...|++++.+..
T Consensus 111 ~lT~i~~~~~gD-~~fP~~------~~~~~~~~~~~~~ 141 (159)
T PRK10769 111 YLTHIDAEVEGD-THFPDY------EPDEWESVFSEFH 141 (159)
T ss_pred EEEEECccccCC-EECCCC------ChHHCEEEEEEec
Confidence 999999998644 444321 2236777765544
No 30
>PF00186 DHFR_1: Dihydrofolate reductase; InterPro: IPR001796 Dihydrofolate reductase (DHFR) (1.5.1.3 from EC) catalyses the NADPH-dependent reduction of dihydrofolate to tetrahydrofolate, an essential step in de novo synthesis both of glycine and of purines and deoxythymidine phosphate (the precursors of DNA synthesis) [], and important also in the conversion of deoxyuridine monophosphate to deoxythymidine monophosphate. Although DHFR is found ubiquitously in prokaryotes and eukaryotes, and is found in all dividing cells, maintaining levels of fully reduced folate coenzymes, the catabolic steps are still not well understood []. Bacterial species possesses distinct DHFR enzymes (based on their pattern of binding diaminoheterocyclic molecules), but mammalian DHFRs are highly similar []. The active site is situated in the N-terminal half of the sequence, which includes a conserved Pro-Trp dipeptide; the tryptophan has been shown [] to be involved in the binding of substrate by the enzyme. Its central role in DNA precursor synthesis, coupled with its inhibition by antagonists such as trimethoprim and methotrexate, which are used as anti-bacterial or anti-cancer agents, has made DHFR a target of anticancer chemotherapy. However, resistance has developed against some drugs, as a result of changes in DHFR itself [].; GO: 0004146 dihydrofolate reductase activity, 0006545 glycine biosynthetic process, 0009165 nucleotide biosynthetic process, 0055114 oxidation-reduction process; PDB: 1ZDR_B 3SA2_B 3JWK_B 3E0B_A 3S9U_B 3FL9_H 3FL8_F 2QK8_A 3JW3_A 3SA1_B ....
Probab=98.98 E-value=2.4e-08 Score=85.71 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=104.3
Q ss_pred EEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCC
Q psy14502 145 VRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDP 224 (352)
Q Consensus 145 V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~ 224 (352)
+.+-+|++.+|-|. .+|...| .-++|.+++.++-.. .++||||+|++.-. .+ .-+....+|++++.....
T Consensus 2 i~lI~A~~~n~~IG-~~~~lPW-~~p~Dl~~Fk~~T~~-~~vIMGrkT~eslp----~~---pLp~R~niVlSr~~~~~~ 71 (161)
T PF00186_consen 2 ISLIVAVDKNGGIG-KDGKLPW-HLPEDLKFFKKLTTG-NPVIMGRKTFESLP----FR---PLPGRINIVLSRNPDYEP 71 (161)
T ss_dssp EEEEEEEETTSEEE-BTTBSSS-SSHHHHHHHHHHHTT-CEEEEEHHHHHHST----GS---SBTTSEEEEESSSTTSCT
T ss_pred EEEEEEECCCCccc-CCCcccc-ccHHHHHHHHHccCC-ccEEEeeCchhcCC----cc---CCCCCeEEEEEcCccccc
Confidence 56788999999996 6788889 678898888886654 69999999998553 11 114456788888776432
Q ss_pred CCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEE
Q psy14502 225 FFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDEL 304 (352)
Q Consensus 225 ~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi 304 (352)
+ |+. .+ -+++++++.++.. .+.|+|.||+++..+++. ++|++
T Consensus 72 ~---------------------------~~~--~~------~s~~~al~~~~~~-~~~i~ViGG~~iy~~~l~--~~d~l 113 (161)
T PF00186_consen 72 E---------------------------GVE--VV------SSLEEALELAKDK-DEEIFVIGGAEIYEQFLP--YADRL 113 (161)
T ss_dssp T---------------------------TSE--EE------SSHHHHHHHHTTS-ESEEEEEE-HHHHHHHHH--GESEE
T ss_pred C---------------------------Cce--ee------CCHHHHHHHhhcc-CCcEEEECCHHHHHHHHH--hCCeE
Confidence 1 111 11 2889999855555 799999999999999999 89999
Q ss_pred EEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEc
Q psy14502 305 LLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343 (352)
Q Consensus 305 ~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g 343 (352)
+|+..+.-. .+-..|+.. +...|++++.+...
T Consensus 114 ~lT~I~~~~-~~D~~fP~~------d~~~~~~~~~~~~~ 145 (161)
T PF00186_consen 114 YLTRIDGDF-EGDTFFPEI------DESEFKLVSEEEHP 145 (161)
T ss_dssp EEEEESSES-TTSEECSSC------CTTTEEEEEEEEEE
T ss_pred EEEEEcCcc-ccceECCCC------ChHHCEEEEEEecc
Confidence 999999766 443444321 23678888887765
No 31
>KOG2771|consensus
Probab=98.95 E-value=7.4e-10 Score=102.80 Aligned_cols=119 Identities=23% Similarity=0.276 Sum_probs=83.1
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe--CCeEEEEeECCCC---CCCcHHHHHHHHHHhc---C----------------
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK--EKRIISCGYTKSP---GGNHAEIDALLNAAAQ---G---------------- 56 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~--~~~i~~~g~~~~~---~~~HaE~~a~~~~~~~---~---------------- 56 (352)
|+.+++.|..+.. ++++|++|++ -..|++.|..... +..|+-|+++...+++ +
T Consensus 171 ~e~~I~~a~~~~~---~~~~~a~I~~p~~~~Via~~~~~~~~~~P~eh~~mv~v~~v~rrq~~~~~~~~~~~~~~f~~~~ 247 (344)
T KOG2771|consen 171 GELLIAMATDGHA---SRPVSAAIVDPVMDRVIAAGTGEVCAYNPIEHCVMVLVHFVARRQEEGTWDLHPIPLLIFNAVS 247 (344)
T ss_pred HHHHHHHHhhhcc---ccCccceecCCccceEEecCCCcccccCcHHHHHHHHHHHHHHHHhcccccccccccccccccc
Confidence 4667777777522 2559999998 4667777766654 3479999999887764 2
Q ss_pred ---------------------CCCCCeEEEEeCCCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHH----HHh
Q psy14502 57 ---------------------YDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGV----AQL 111 (352)
Q Consensus 57 ---------------------~~~~~~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~----~~l 111 (352)
..+.|+++|+|+|||. ||++|+++++|+||+|+...+..+..+... ..-
T Consensus 248 ~~~~~~~~~v~~~D~~~d~~pYLCtgydv~ll~EPC~------MCsMALvHsRikRvfy~~~~s~~G~L~s~~~i~~~k~ 321 (344)
T KOG2771|consen 248 SPFYKQTVAVQLLDVSADSFPYLCTGYDVYLLHEPCA------MCSMALVHSRIKRVFYCKPMSTAGGLGSLYRIHQRKS 321 (344)
T ss_pred chhhhhhchhccccccccccceeeecceEEEecChHH------HHHHHHHHHhhhheeeccCCCCCCCccceeEeeeccc
Confidence 2357899999999997 999999999999999998644433222111 122
Q ss_pred hhCCCeeeecchhhhhh
Q psy14502 112 ISAGISVKQGLMQKEAY 128 (352)
Q Consensus 112 ~~~gi~v~~~~~~~~~~ 128 (352)
.++.++|..+.+++++.
T Consensus 322 LNhry~vfr~~~e~d~~ 338 (344)
T KOG2771|consen 322 LNHRYEVFRGYLEEDPI 338 (344)
T ss_pred cCcceEEEEeecccccc
Confidence 24566777666665554
No 32
>PF14439 Bd3614-deam: Bd3614-like deaminase
Probab=98.77 E-value=2.3e-08 Score=78.61 Aligned_cols=77 Identities=18% Similarity=0.232 Sum_probs=62.4
Q ss_pred EEEEEEe-CCeEEEEeECCC--CCCCcHHHHHHHHHHhc-----------------------CCCCCCeEEEEeCCCCCC
Q psy14502 20 VGCVIVK-EKRIISCGYTKS--PGGNHAEIDALLNAAAQ-----------------------GYDVYNSTVYITLEPCSY 73 (352)
Q Consensus 20 vgaviv~-~~~i~~~g~~~~--~~~~HaE~~a~~~~~~~-----------------------~~~~~~~~ly~t~ePC~~ 73 (352)
|-|.+|+ +|+++..+.|.. +...|||+|.+.-.... +....|++||+|+.||.
T Consensus 10 VvA~lv~~~G~l~daa~NtNa~N~~LHAE~NLl~p~~~~~~~~~~~~~d~~~~~~g~g~~~~~~l~~ga~l~vTlqcCk- 88 (136)
T PF14439_consen 10 VVAALVSPDGELVDAAVNTNADNKMLHAEWNLLMPWLWREWVDSPTDDDEIGNRPGDGPEERRPLPPGARLLVTLQCCK- 88 (136)
T ss_pred eeEEEECCCCcEEEeeeccCCccceeehhhhhhhHHHHhhcccCCCcccccccCCCcchhhcCcCCCCcEEEEechhHH-
Confidence 6777777 999999998754 56899999998766442 12357999999999996
Q ss_pred CCCCcchHHHHHHhCC-------cEEEEEeeCCCCC
Q psy14502 74 FGYTPPCTEALIKSGI-------KKVIIAINDPNPL 102 (352)
Q Consensus 74 ~g~t~~C~~~i~~~gi-------~~vv~~~~~~~~~ 102 (352)
||+..+..+.. .+|||+..||-+.
T Consensus 89 -----MCAalv~a~~d~pg~~~~~~vvY~~ed~G~L 119 (136)
T PF14439_consen 89 -----MCAALVCAASDRPGRRVPIDVVYLNEDPGSL 119 (136)
T ss_pred -----HHHHHHHHHhhCcCCccceEEEEecCCCCcc
Confidence 99999999876 8899998877643
No 33
>TIGR01354 cyt_deam_tetra cytidine deaminase, homotetrameric. This small, homotetrameric zinc metalloprotein is found in humans and most bacteria. A related, homodimeric form with a much larger subunit is found in E. coli and in Arabidopsis. Both types may act on deoxycytidine as well as cytidine.
Probab=98.54 E-value=1.1e-06 Score=72.58 Aligned_cols=80 Identities=24% Similarity=0.322 Sum_probs=60.8
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCC-CCCeEEEE----eCCCC
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYD-VYNSTVYI----TLEPC 71 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~-~~~~~ly~----t~ePC 71 (352)
+.|.+.++++.....+.+|||+|+. +|+|+. |+|... .+.|||+.||.++.+.|.. .+...++. ++.||
T Consensus 5 ~~a~~a~~~ay~PyS~~~vgAa~~~~~G~i~~-G~n~e~~~~~~s~~AE~~Ai~~a~~~g~~~i~~i~vv~~~~~~~sPC 83 (127)
T TIGR01354 5 KAAQEARKNAYAPYSNFKVGAALLTKDGRIFT-GVNVENASYPLTICAERSAIGKAISAGYRKFVAIAVADSADDPVSPC 83 (127)
T ss_pred HHHHHHHHhcCCCcCCCeEEEEEEeCCCCEEE-EEeecccCCCCCcCHHHHHHHHHHHcCCCCeEEEEEEeCCCCCcCcc
Confidence 4567777777544333449999997 899888 998763 5789999999999888664 34444443 57899
Q ss_pred CCCCCCcchHHHHHHhC
Q psy14502 72 SYFGYTPPCTEALIKSG 88 (352)
Q Consensus 72 ~~~g~t~~C~~~i~~~g 88 (352)
++|...|.+.+
T Consensus 84 ------G~Crq~l~e~~ 94 (127)
T TIGR01354 84 ------GACRQVLAEFA 94 (127)
T ss_pred ------HHHHHHHHHhC
Confidence 69999999986
No 34
>KOG1324|consensus
Probab=97.92 E-value=0.0003 Score=60.20 Aligned_cols=128 Identities=11% Similarity=0.049 Sum_probs=85.3
Q ss_pred eEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHH------hccceEEEccccccccCCCcccCCCCCCCCCeEEEEc
Q psy14502 144 WVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWR------ARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVID 217 (352)
Q Consensus 144 ~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr------~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~ 217 (352)
.+-+..|+|-+.=|- .+|...|--- .+.+++..+- ..-.|+||||+|.+.-. ....+ -+..+-||++
T Consensus 3 ~~~~Vva~~~~mGIG-k~g~LPW~lp-semkyF~~vT~~tsd~~k~NaViMGRKtweSiP----~k~RP-L~gRiNiVLS 75 (190)
T KOG1324|consen 3 LLNLVVALSPNMGIG-KNGDLPWPLP-SEMKYFRRVTTSTSDPSKKNAVIMGRKTWESIP----EKFRP-LPGRINVVLS 75 (190)
T ss_pred eeEEEEEEccccCcc-cCCCCCCCCH-HHHHHHHHHhhccCCcccceeEEecccccccCC----cccCC-CCCceEEEEe
Confidence 345566777776663 6777777433 5556666553 33579999999976332 12112 2345679999
Q ss_pred CCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC----CCCEEEEeecHHHHH
Q psy14502 218 SYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR----KINELHIEAGYQLNT 293 (352)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~----g~~~i~veGG~~l~~ 293 (352)
|+...+... ... ++ .+ -.++.+|+.|.+. .+..|+|.||+.+.+
T Consensus 76 R~~~~~~~~----t~~-~~---------------------~~------~slesAl~lL~~pp~~~~ve~vfvIGG~~vy~ 123 (190)
T KOG1324|consen 76 RSLKEDFAP----TEN-VF---------------------LS------SSLESALDLLEEPPSSNSVEMVFVIGGSEVYS 123 (190)
T ss_pred cccCcCcCC----ccC-EE---------------------Ee------ccHHHHHHhhcCCccccceeEEEEEcCHHHHH
Confidence 887643211 000 11 11 2678888888875 458999999999999
Q ss_pred HHHHcCCCcEEEEEEec
Q psy14502 294 ALILEGCVDELLLYISP 310 (352)
Q Consensus 294 ~fl~~gLvDEi~l~i~P 310 (352)
+.+.+.+.|.++++-.-
T Consensus 124 ~al~~p~~~~i~~T~I~ 140 (190)
T KOG1324|consen 124 EALNSPRCDAIHITEIF 140 (190)
T ss_pred HHHcCcCcceEEEEEec
Confidence 99999999999999543
No 35
>PRK06848 hypothetical protein; Validated
Probab=97.58 E-value=0.0007 Score=56.62 Aligned_cols=81 Identities=20% Similarity=0.224 Sum_probs=56.6
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCCCCCeEEEEe---------
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYIT--------- 67 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~~~~~~ly~t--------- 67 (352)
+.|.+.++++..- .+..|||++.. +|+|. +|.|-.+ .+.|||..||-++...|...-.+.+-++
T Consensus 12 ~~A~~a~~~ay~p-s~f~VgAa~l~~~G~i~-~G~NvEnas~~~tiCAEr~Ai~~av~~g~~~i~~i~~v~~~~~~~~~~ 89 (139)
T PRK06848 12 KAAEKVIEKRYRN-DWHHVGAALRTKTGRIY-AAVHLEAYVGRITVCAEAIAIGKAISEGDHEIDTIVAVRHPKPHEDDR 89 (139)
T ss_pred HHHHHHHHhccCC-CCCcEEEEEEeCCCCEE-EEEEeecCCCCcccCHHHHHHHHHHHcCCCceEEEEEEecCccccccc
Confidence 4566666666544 45559999998 88877 7887653 4789999999999877654222222222
Q ss_pred ----CCCCCCCCCCcchHHHHHHhCCc
Q psy14502 68 ----LEPCSYFGYTPPCTEALIKSGIK 90 (352)
Q Consensus 68 ----~ePC~~~g~t~~C~~~i~~~gi~ 90 (352)
..|| ++|...|.+.+-.
T Consensus 90 ~~~~~~PC------G~CRQvl~E~~~~ 110 (139)
T PRK06848 90 EIWVVSPC------GACRELISDYGKN 110 (139)
T ss_pred CCCccCCC------hhhHHHHHHhCCC
Confidence 5699 5999999998533
No 36
>PRK12411 cytidine deaminase; Provisional
Probab=97.56 E-value=0.0014 Score=54.31 Aligned_cols=79 Identities=20% Similarity=0.366 Sum_probs=54.9
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCCCCCeEEEE-e-----CCC
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYI-T-----LEP 70 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~~~~~~ly~-t-----~eP 70 (352)
+.|.+.++++.....+..|||++.. +|+|+ +|.|-.. .+.|||..||-++...|...- .++++ + ..|
T Consensus 8 ~~a~~~~~~ay~pyS~~~VgAa~~t~~G~i~-~G~nvEn~s~~~s~CAE~~Ai~~av~~g~~~i-~~i~v~~~~~~~~sP 85 (132)
T PRK12411 8 QEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDKEF-VAIAIVADTKRPVPP 85 (132)
T ss_pred HHHHHHHHhcCCCccCCceEEEEEeCCCCEE-EEEEeecCCCCcCcCHHHHHHHHHHHCCCCce-EEEEEEeCCCCCcCC
Confidence 3456666666554334449999987 88887 7887554 378999999999987765322 22333 2 469
Q ss_pred CCCCCCCcchHHHHHHhC
Q psy14502 71 CSYFGYTPPCTEALIKSG 88 (352)
Q Consensus 71 C~~~g~t~~C~~~i~~~g 88 (352)
| ++|...|.+..
T Consensus 86 C------G~CRQ~l~Ef~ 97 (132)
T PRK12411 86 C------GACRQVMVELC 97 (132)
T ss_pred c------hhHHHHHHHhC
Confidence 9 59999999964
No 37
>PRK05578 cytidine deaminase; Validated
Probab=97.02 E-value=0.0086 Score=49.56 Aligned_cols=80 Identities=23% Similarity=0.336 Sum_probs=54.0
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCC-CCCeEEEE----eCCCC
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYD-VYNSTVYI----TLEPC 71 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~-~~~~~ly~----t~ePC 71 (352)
+.|.+.++++..-..+..|||++.. +|+|. +|.|-.. .+.|||..||-++...|.. .+...++. ...||
T Consensus 8 ~~a~~~~~~ay~PyS~f~Vgaa~~~~~G~i~-~G~nvEna~~~~~~CAE~~Ai~~av~~G~~~i~~i~vv~~~~~~~sPC 86 (131)
T PRK05578 8 EAAIEASEKAYAPYSKFPVGAALLTDDGRIY-TGCNIENASYGLTNCAERTAIFKAISEGGGRLVAIACVGETGEPLSPC 86 (131)
T ss_pred HHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEEeeCccccCCcCHHHHHHHHHHHcCCCceEEEEEEecCCCccCcc
Confidence 3455555555443334459999998 78766 5776543 4789999999999877653 22222221 25799
Q ss_pred CCCCCCcchHHHHHHhC
Q psy14502 72 SYFGYTPPCTEALIKSG 88 (352)
Q Consensus 72 ~~~g~t~~C~~~i~~~g 88 (352)
.+|...|.+..
T Consensus 87 ------G~CRQ~l~e~~ 97 (131)
T PRK05578 87 ------GRCRQVLAEFG 97 (131)
T ss_pred ------HHHHHHHHHhC
Confidence 59999999875
No 38
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=96.80 E-value=0.013 Score=54.69 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=56.7
Q ss_pred HHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCC--C----CCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC
Q psy14502 3 LALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS--P----GGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFG 75 (352)
Q Consensus 3 ~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~--~----~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g 75 (352)
.|.+.++++..--.+..|||++.. +|+|. +|.|-. . .+.|||..||.++...|.. +=..+.++..||
T Consensus 28 ~a~~a~~~AyaPYS~F~VGAall~~~G~iy-~GvNvE~~nas~~~tiCAEr~Ai~~Av~~Ge~-~i~~Iav~~~PC---- 101 (283)
T TIGR01355 28 LIPKAASYARAPISKFNVGAVGRGSSGRFY-LGVNVEFPGLPLHHSIHAEQFLISHLALNNER-GLNDLAVSYAPC---- 101 (283)
T ss_pred HHHHHHhcCcCCccCCeeeEEEEeCCCCEE-EEEEeccCCCCCCccccHHHHHHHHHHHcCCC-ceEEEEEEeCCc----
Confidence 344444455555556669999988 88876 577755 2 2689999999999877664 235567778899
Q ss_pred CCcchHHHHHHhC
Q psy14502 76 YTPPCTEALIKSG 88 (352)
Q Consensus 76 ~t~~C~~~i~~~g 88 (352)
.+|...|.+..
T Consensus 102 --G~CRQ~l~Ef~ 112 (283)
T TIGR01355 102 --GHCRQFLNEIR 112 (283)
T ss_pred --chhHHHHHHhc
Confidence 59999999873
No 39
>PRK08298 cytidine deaminase; Validated
Probab=96.67 E-value=0.015 Score=48.37 Aligned_cols=79 Identities=19% Similarity=0.143 Sum_probs=53.0
Q ss_pred HHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCCCCCeEEEE-e--------C
Q psy14502 3 LALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYI-T--------L 68 (352)
Q Consensus 3 ~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~~~~~~ly~-t--------~ 68 (352)
.|.+..+++.. |...|||.|.. ||+|+ +|.|-.+ .+..||.+||-++-..|...-...+.+ . .
T Consensus 10 ~A~~a~~~aY~--PYS~VgAAllt~dG~i~-tG~NvEnas~~~t~CAEr~Ai~~av~~G~~~~~~i~v~~~~~~~~~~~~ 86 (136)
T PRK08298 10 VAKQLIEQRYP--NGWGGAAAMRVEDGTIL-TSVAPEVINASTELCMETGAICEAHKLQKRVTHSICVARENEHSELKVL 86 (136)
T ss_pred HHHHHHHhccC--CCCceeEEEEeCCCCEE-EEEeecCCCCCcchhHHHHHHHHHHHCCCceEEEEEEEcCCCcCCCccc
Confidence 44444444443 22369999987 88887 7888543 478999999999977765322222222 1 4
Q ss_pred CCCCCCCCCcchHHHHHHhCCc
Q psy14502 69 EPCSYFGYTPPCTEALIKSGIK 90 (352)
Q Consensus 69 ePC~~~g~t~~C~~~i~~~gi~ 90 (352)
.|| .+|...|.+.+-.
T Consensus 87 sPC------G~CRQvl~Ef~~~ 102 (136)
T PRK08298 87 SPC------GVCQERLFYWGPD 102 (136)
T ss_pred CCC------hhHHHHHHHhCCC
Confidence 599 5999999998644
No 40
>COG0295 Cdd Cytidine deaminase [Nucleotide transport and metabolism]
Probab=96.59 E-value=0.021 Score=47.18 Aligned_cols=78 Identities=22% Similarity=0.263 Sum_probs=53.1
Q ss_pred HHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCCC-CCeEEEEe----CCCCCC
Q psy14502 4 ALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDV-YNSTVYIT----LEPCSY 73 (352)
Q Consensus 4 a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~~-~~~~ly~t----~ePC~~ 73 (352)
|.+.+..+...-.+..|||++.. +|+| -+|.|-.+ -+.|||..||-++-..|... +--.+|.. .-||
T Consensus 12 a~~a~~~ay~PYS~F~VGAa~~t~~G~i-~tG~NiEnasy~~t~CAErsAI~~ais~G~~~~~~v~v~~~~~~~~sPC-- 88 (134)
T COG0295 12 APEAAANAYAPYSKFKVGAALRTKDGRI-YTGANVENASYGLTVCAERSAIFKAISEGKRKFDAVVVVADTGKPVSPC-- 88 (134)
T ss_pred HHHHHHhccCcccCCcEEEEEEeCCCCE-EEEEeeecccccchhhHHHHHHHHHHHcCCCcEEEEEEEcCCCCCcCCc--
Confidence 33444444555555669999998 6655 47888664 36899999999998775432 22223332 5699
Q ss_pred CCCCcchHHHHHHhC
Q psy14502 74 FGYTPPCTEALIKSG 88 (352)
Q Consensus 74 ~g~t~~C~~~i~~~g 88 (352)
.+|..-|.+..
T Consensus 89 ----G~CRQ~i~Ef~ 99 (134)
T COG0295 89 ----GACRQVLAEFC 99 (134)
T ss_pred ----HHHHHHHHHhc
Confidence 59999999975
No 41
>PRK09027 cytidine deaminase; Provisional
Probab=96.22 E-value=0.031 Score=52.45 Aligned_cols=75 Identities=17% Similarity=0.221 Sum_probs=54.8
Q ss_pred HHHhhc-CCCCCCCcEEEEEEe-CCeEEEEeECCCC------CCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCC
Q psy14502 6 QQAKLS-INSSPNPRVGCVIVK-EKRIISCGYTKSP------GGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYT 77 (352)
Q Consensus 6 ~~a~~~-~~~~~~p~vgaviv~-~~~i~~~g~~~~~------~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t 77 (352)
..|++. ..--.+..|||++.. +|+|. .|.|-.. .+.|||..||.++...|.. +=..+.++..||
T Consensus 58 ~~a~~~AyaPyS~F~VGAa~~~~sG~iy-~GvNvE~~~~s~~~tiCAEr~Ai~~a~~~Ge~-~i~~I~v~~sPC------ 129 (295)
T PRK09027 58 PLAAACAVTPISHFNVGAIARGVSGNFY-FGANMEFAGAALQQTVHAEQSAISHAWLRGEK-AIADITVNYTPC------ 129 (295)
T ss_pred HHHHHhccCCCCCCcEEEEEEeCCCCEE-EEEeeccCCCCCCCCcCHHHHHHHHHHHCCCC-ceEEEEEEecCc------
Confidence 344443 444445669999988 88876 7888654 3689999999999877653 235566678899
Q ss_pred cchHHHHHHhC
Q psy14502 78 PPCTEALIKSG 88 (352)
Q Consensus 78 ~~C~~~i~~~g 88 (352)
++|..-|.+..
T Consensus 130 G~CRQ~l~E~~ 140 (295)
T PRK09027 130 GHCRQFMNELN 140 (295)
T ss_pred hhhHHHHHHhC
Confidence 59999999863
No 42
>PLN02402 cytidine deaminase
Probab=96.20 E-value=0.032 Score=52.40 Aligned_cols=69 Identities=20% Similarity=0.184 Sum_probs=51.2
Q ss_pred CCCCCCCcEEEEEEe-CCeEEEEeECCCC------CCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcchHHHH
Q psy14502 12 INSSPNPRVGCVIVK-EKRIISCGYTKSP------GGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEAL 84 (352)
Q Consensus 12 ~~~~~~p~vgaviv~-~~~i~~~g~~~~~------~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~C~~~i 84 (352)
..-..+..|||++.. +|+|. +|.|-.. .+.|||..||.++...|..- =..+.++..|| ++|...|
T Consensus 40 yaPYS~F~VGAa~l~~~G~i~-~GvNVEnasy~l~~tiCAEr~Ai~~av~~G~~~-i~~iaV~~sPC------G~CRQ~l 111 (303)
T PLN02402 40 RPPISKYHVGAVGLGSSGRIF-LGVNLEFPGLPLHHSVHAEQFLITNLTLNAEPH-LKYVAVSAAPC------GHCRQFF 111 (303)
T ss_pred CCCCCCCeeeEEEEeCCCCEE-EEEeeecCCCCCCCcccHHHHHHHHHHHcCCCc-eEEEEEEeCCC------cccHHHH
Confidence 444445569999988 78765 5777542 16899999999998776542 23467778999 5999999
Q ss_pred HHhC
Q psy14502 85 IKSG 88 (352)
Q Consensus 85 ~~~g 88 (352)
.+..
T Consensus 112 ~Ef~ 115 (303)
T PLN02402 112 QEIR 115 (303)
T ss_pred HHhc
Confidence 9873
No 43
>PLN02182 cytidine deaminase
Probab=95.79 E-value=0.087 Score=50.13 Aligned_cols=71 Identities=23% Similarity=0.218 Sum_probs=50.2
Q ss_pred CCCCCCCcEEEEEEe-CCeEEEEeECCCC------CCCcHHHHHHHHHHhcCCC-CCCeEEEEe------CCCCCCCCCC
Q psy14502 12 INSSPNPRVGCVIVK-EKRIISCGYTKSP------GGNHAEIDALLNAAAQGYD-VYNSTVYIT------LEPCSYFGYT 77 (352)
Q Consensus 12 ~~~~~~p~vgaviv~-~~~i~~~g~~~~~------~~~HaE~~a~~~~~~~~~~-~~~~~ly~t------~ePC~~~g~t 77 (352)
..--.+..|||++.. +|+|. +|.|-.. .+.|||..||.++..+|.. +..-.+.+. ..||
T Consensus 60 yaPyS~F~VGAa~l~~sG~iy-~GvNVEnas~pl~~tICAEr~AI~~A~~~Ge~~i~~iaVaV~~~~~~~~sPC------ 132 (339)
T PLN02182 60 RAPISKYKVGAVGRASSGRVY-LGVNVDFPGLPLHHSIHAEQFLVTNLALNSEKDLCELAVAISTDGKEFGTPC------ 132 (339)
T ss_pred cCCccCCeeeEEEEeCCCCEE-EEEEeecCCCccCCccCHHHHHHHHHHHCCCCceEEEEEEEecCCCCCcCCC------
Confidence 444445569999987 88765 6777653 2689999999999887764 222223332 6799
Q ss_pred cchHHHHHHhCC
Q psy14502 78 PPCTEALIKSGI 89 (352)
Q Consensus 78 ~~C~~~i~~~gi 89 (352)
++|..-|.+..-
T Consensus 133 G~CRQfm~Ef~~ 144 (339)
T PLN02182 133 GHCLQFLMEMSN 144 (339)
T ss_pred chhHHHHHHhCC
Confidence 599999999853
No 44
>KOG0833|consensus
Probab=95.66 E-value=0.1 Score=44.65 Aligned_cols=84 Identities=20% Similarity=0.199 Sum_probs=57.2
Q ss_pred HHHHhhc-CCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCCCCCeEEEEe------CCCCC
Q psy14502 5 LQQAKLS-INSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYIT------LEPCS 72 (352)
Q Consensus 5 ~~~a~~~-~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~~~~~~ly~t------~ePC~ 72 (352)
+..|++. ...-.+.+|||++.- +|+|. .|.|-.. .+.|||+.||.++..+|..---+-..++ ..||
T Consensus 28 ~~~A~~~AyaPyS~fkVGA~~r~ssGrif-~G~NVEn~~~~~sIcAEr~ai~~l~l~g~~k~~~~aV~~~~~~~f~tPC- 105 (173)
T KOG0833|consen 28 ARKAMKLAYAPYSKFKVGAAGRASSGRIF-LGVNVENASYHHSICAERFAIANLALNGERKFRAIAVVAYEDGDFTTPC- 105 (173)
T ss_pred HHHHHHhccCCccCCceEEEEEecCCcEE-EeeeecccCCCCcccHHHHHHHHHHHcCcccceEEEEEecCCCCcCCCc-
Confidence 3344443 443444559999997 77765 5777553 5789999999999988764323333333 5799
Q ss_pred CCCCCcchHHHHHHhCCc-EEEEE
Q psy14502 73 YFGYTPPCTEALIKSGIK-KVIIA 95 (352)
Q Consensus 73 ~~g~t~~C~~~i~~~gi~-~vv~~ 95 (352)
+-|..-|...+-. -|...
T Consensus 106 -----G~CRQfl~Ef~~~~~l~~~ 124 (173)
T KOG0833|consen 106 -----GVCRQFLREFGNASLLLEY 124 (173)
T ss_pred -----HHHHHHHHHHhhcceeeee
Confidence 5899999998877 44443
No 45
>PF08210 APOBEC_N: APOBEC-like N-terminal domain; InterPro: IPR013158 This domain is found at the N terminus of the Apolipoprotein B mRNA editing enzyme. Apobec-1 catalyzes C to U editing of apolipoprotein B (apoB) mRNA in the mammalian intestine. The N-terminal domain of APOBEC-1 like proteins is the catalytic domain, while the C-terminal domain is a pseudocatalyitc domain. More specifically, the catalytic domain is a zinc dependent deaminases domain and is essential for cytidine deamination. APOBEC-3 like members contain two copies of this domain. This family also includes the functionally homologous activation induced deaminase, which is essential for the development of antibody diversity in B lymphocytes. RNA editing by APOBEC-1 requires homodimerisation and this complex interacts with RNA binding proteins to from the editosome [] (and references therein).; GO: 0008270 zinc ion binding, 0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines; PDB: 3IQS_A 3IR2_A 3V4J_B 2KEM_A 2KBO_A 3V4K_A 3E1U_A 2JYW_A 2RPZ_A.
Probab=95.43 E-value=0.068 Score=47.08 Aligned_cols=100 Identities=25% Similarity=0.356 Sum_probs=62.5
Q ss_pred CCCCcEEEEEEe--CCeEEEEeECCCC--CCCcHHHHHHHHHHhcCC----CCCCeEEEEeCCCCCCCCCCcc----hHH
Q psy14502 15 SPNPRVGCVIVK--EKRIISCGYTKSP--GGNHAEIDALLNAAAQGY----DVYNSTVYITLEPCSYFGYTPP----CTE 82 (352)
Q Consensus 15 ~~~p~vgaviv~--~~~i~~~g~~~~~--~~~HaE~~a~~~~~~~~~----~~~~~~ly~t~ePC~~~g~t~~----C~~ 82 (352)
+.+..+=|.-|+ +|.-+-.|+-... ...|||+.-|........ ..---|.|+|..||. . |+.
T Consensus 21 ~r~~t~Lcy~v~~~~~~~~~~g~~~n~~~~~~HAE~~fl~~i~~~~~~~~~~~y~ITwy~SwSPC~------~~~~~Ca~ 94 (188)
T PF08210_consen 21 GRNKTYLCYEVEGRDGSWVQRGYFRNENCKGRHAELCFLDWIRSWLLFDPDQIYRITWYLSWSPCP------ESDHCCAE 94 (188)
T ss_dssp SSSS-EEEEEEEEECTTEEEECECCSTTSTSB-HHHHHHHHCCCGTB-TTTSEEEEEEEESSS--C------C----HHH
T ss_pred CCCeEEEEEEEEEecCCCceEEEEECCCCCCCCHHHHHHHHHHHhhccCCCceEEEEEEEecCCCc------chhhHHHH
Confidence 555667777786 5556666664443 689999999998843221 123579999999996 8 999
Q ss_pred HHHHh-------CCcEEEEEe-eCCCCC-C---cchHHHHhhhCCCeeee
Q psy14502 83 ALIKS-------GIKKVIIAI-NDPNPL-V---SGKGVAQLISAGISVKQ 120 (352)
Q Consensus 83 ~i~~~-------gi~~vv~~~-~~~~~~-~---~~~~~~~l~~~gi~v~~ 120 (352)
.|+.. +++=.+|.+ .+.-.. . ...|+..|.++|++|..
T Consensus 95 ~i~~FL~~~~~~~v~L~I~~arLY~~~~~~~~~~~eGLr~L~~aGv~v~i 144 (188)
T PF08210_consen 95 KIAEFLKKHLKPNVSLSIFAARLYYHWEPEPLWNQEGLRRLASAGVQVEI 144 (188)
T ss_dssp HHHHHHCCC--TTEEEEEEESS--STTSTT---HHHHHHHHHHCTEEEEE
T ss_pred HHHHHHHHhCCCCCeEEEEEEeeeeecCCcchhHHHHHHHHHHcCCEEEE
Confidence 99985 223233333 221111 1 34689999999999975
No 46
>PF14437 MafB19-deam: MafB19-like deaminase
Probab=95.09 E-value=0.048 Score=45.59 Aligned_cols=51 Identities=27% Similarity=0.389 Sum_probs=42.3
Q ss_pred CCcHHHHHHHHHHhcCCC-CCCeEEEEeCCCCCCCCCCcchHHHH----HHhCCcEEEEEee
Q psy14502 41 GNHAEIDALLNAAAQGYD-VYNSTVYITLEPCSYFGYTPPCTEAL----IKSGIKKVIIAIN 97 (352)
Q Consensus 41 ~~HaE~~a~~~~~~~~~~-~~~~~ly~t~ePC~~~g~t~~C~~~i----~~~gi~~vv~~~~ 97 (352)
..|||+.+|.+|..+|.. .+..+|||...+|. .|-+.| ..+|++++.+-..
T Consensus 80 ~~HAE~~aiqqA~d~G~~~g~~~tm~Vdr~vC~------~C~~~i~~~a~~lGl~~L~I~~~ 135 (146)
T PF14437_consen 80 KAHAEAGAIQQAYDAGKTVGRSMTMYVDRDVCG------YCGGDIPSMAEKLGLKSLTIHEP 135 (146)
T ss_pred HHHHHHHHHHHHHHhcCccCCeEEEEECcccch------HHHHHHHHHHHHcCCCeEEEEec
Confidence 369999999999988776 78999999988896 896544 4579999887654
No 47
>PRK09027 cytidine deaminase; Provisional
Probab=95.06 E-value=0.14 Score=48.03 Aligned_cols=84 Identities=18% Similarity=0.127 Sum_probs=61.8
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCC----CCCCcHHHHHHHHHHhcCCC---CCCeEEEEe----CC
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS----PGGNHAEIDALLNAAAQGYD---VYNSTVYIT----LE 69 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~----~~~~HaE~~a~~~~~~~~~~---~~~~~ly~t----~e 69 (352)
+.|++.|.++..-..+-.|||.|.. ||+|. .|.|-. +.+..||..||..+-..|.. .+...|+.. ..
T Consensus 194 ~~A~~aa~~SYaPYS~f~vGaAl~~~dG~i~-~G~nvENAAynpslcaer~Al~~~v~~G~~~~~i~~i~lv~~~~~~is 272 (295)
T PRK09027 194 QAALDAANRSHAPYSQSYSGVALETKDGRIY-TGRYAENAAFNPSLPPLQGALNLLNLSGEDFSDIQRAVLVEKADAKLS 272 (295)
T ss_pred HHHHHHHHhccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHcCCCccCEEEEEEEeCCCCCcC
Confidence 5688888888555566669999997 88887 677654 36899999999999877764 455555554 35
Q ss_pred CCCCCCCCcchHHHHHHhCCcEE
Q psy14502 70 PCSYFGYTPPCTEALIKSGIKKV 92 (352)
Q Consensus 70 PC~~~g~t~~C~~~i~~~gi~~v 92 (352)
|| .+|...|...+-..+
T Consensus 273 pc------g~cRq~L~ef~~~~~ 289 (295)
T PRK09027 273 QW------DATQATLKALGCHEL 289 (295)
T ss_pred ch------HHHHHHHHHhCCCCc
Confidence 88 499999888754443
No 48
>TIGR01355 cyt_deam_dimer cytidine deaminase, homodimeric. This homodimeric zinc metalloprotein is found in Arabidopis and some Proteobacteria. A related, homotetrameric form with a much smaller subunit is found most bacteria and in animals. Both types may act on deoxycytidine as well as cytidine.
Probab=89.84 E-value=1.9 Score=40.37 Aligned_cols=53 Identities=19% Similarity=0.204 Sum_probs=41.0
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhc
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQ 55 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~ 55 (352)
+.|.+.++++..-..+..|||.|+. +|+|. .|.|-.+ .+.+||..||..+-..
T Consensus 179 ~~A~~a~~~sYaPYS~f~vgaal~~~~g~i~-~G~nvENAay~~slcaer~Ai~~~v~~ 236 (283)
T TIGR01355 179 QQALKAANRSYAPYSKSPSGVALLDKEGKVY-RGWYIESAAFNPSLGPVQAALVDFMAN 236 (283)
T ss_pred HHHHHHHHhccCCCcCCceeEEEEeCCCCEE-EEEEeecCCCCCcccHHHHHHHHHHHh
Confidence 4577777777665666669999998 78776 6777653 5789999999999766
No 49
>PLN02402 cytidine deaminase
Probab=86.39 E-value=1.9 Score=40.73 Aligned_cols=53 Identities=21% Similarity=0.139 Sum_probs=41.0
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhc
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQ 55 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~ 55 (352)
+.|++.++++..-..+-.|||.|+. ||+|. .|+|-.+ .+.+||..||..+-..
T Consensus 197 ~~A~~a~~~sYaPYS~f~VGaal~~~dG~i~-~G~nvENAay~~slcAer~Ai~~~v~~ 254 (303)
T PLN02402 197 NEALEAANKSHAPYSNCPSGVALMDCEGKVY-RGSYMESAAYNPSMGPVQAALVAYVAG 254 (303)
T ss_pred HHHHHHHHcccCCccCCceeEEEEeCCCCEE-EEEEEEcCCCCCcccHHHHHHHHHHHc
Confidence 4677778887655566669999998 88876 6777653 6899999999999554
No 50
>PF14440 XOO_2897-deam: Xanthomonas XOO_2897-like deaminase
Probab=85.03 E-value=0.69 Score=37.42 Aligned_cols=60 Identities=25% Similarity=0.321 Sum_probs=45.2
Q ss_pred CCCCcHHHHHHHHHHhcCCCC-CCeEEEEeCCCCCCCCCCcchHHHHHHh-CCcEEEEEeeCCCC
Q psy14502 39 PGGNHAEIDALLNAAAQGYDV-YNSTVYITLEPCSYFGYTPPCTEALIKS-GIKKVIIAINDPNP 101 (352)
Q Consensus 39 ~~~~HaE~~a~~~~~~~~~~~-~~~~ly~t~ePC~~~g~t~~C~~~i~~~-gi~~vv~~~~~~~~ 101 (352)
.+..|+|..++..+.+.+... +=..||+=+|||.. .+.|+..|-.+ -=-+|.|...++..
T Consensus 43 ~~~~H~E~~il~~l~~~~v~p~~I~elYtEl~PC~~---~~~C~~~l~~~~p~a~vt~s~~yg~d 104 (118)
T PF14440_consen 43 GGKPHSERAILHQLRAHGVPPEQITELYTELEPCEL---GGYCARMLRNSLPGAEVTYSFDYGTD 104 (118)
T ss_pred CCCCChHHHHHHHHHHcCCcHHHHHHHHHhcccccc---cchHHHHHHhhCCCCeEEEeccCCCc
Confidence 568999999999997766553 34679999999974 34599999987 23457777766544
No 51
>PF14431 YwqJ-deaminase: YwqJ-like deaminase
Probab=82.39 E-value=1.6 Score=35.74 Aligned_cols=43 Identities=23% Similarity=0.361 Sum_probs=30.8
Q ss_pred CCcHHHHHHHHHHhc----CCCCCCeEEEEe-------------CCCCCCCCCCcchHHHHHHhCC
Q psy14502 41 GNHAEIDALLNAAAQ----GYDVYNSTVYIT-------------LEPCSYFGYTPPCTEALIKSGI 89 (352)
Q Consensus 41 ~~HaE~~a~~~~~~~----~~~~~~~~ly~t-------------~ePC~~~g~t~~C~~~i~~~gi 89 (352)
..|||+.|+.++-.+ ...++++.+|+. ..|| +.|+..+.+.||
T Consensus 66 G~cAEv~avn~~L~~~d~~~~~~~~a~~~~~~ir~~~~~~~G~~~~pC------~nC~~~l~~~~v 125 (125)
T PF14431_consen 66 GRCAEVIAVNDALWARDAARRSLEGAKITTRRIREPGDPEHGKYAPPC------RNCAALLKHFGV 125 (125)
T ss_pred CcccHHHHHHHHHHhhhccccccccccceeeeeecccCCCCCCCCCCC------chHHHHHhhcCC
Confidence 369999999999775 334445544442 3588 489999999886
No 52
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=77.80 E-value=3 Score=32.65 Aligned_cols=66 Identities=18% Similarity=0.057 Sum_probs=43.9
Q ss_pred CCceEEEEcCC---ChhhHHHHHhCCcEEEEecCCCCC-CCHHHHHHHHHh-CCCCEEEEeecHHHHHHHHHcCC
Q psy14502 231 GGGSCIFTATD---LPMKRKILEDLGHEVIVLPNNLGK-VDLQAVIIELGK-RKINELHIEAGYQLNTALILEGC 300 (352)
Q Consensus 231 ~~~~~v~t~~~---~~~~~~~l~~~g~~v~~~~~~~~~-~dl~~~l~~L~~-~g~~~i~veGG~~l~~~fl~~gL 300 (352)
..+++++|.+. ..++.+.|+..|+.+-. . +- .....+...|++ .+.+++++.|.+.+...|-++|+
T Consensus 30 g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~-~---~i~ts~~~~~~~l~~~~~~~~v~vlG~~~l~~~l~~~G~ 100 (101)
T PF13344_consen 30 GKPVVFLTNNSSRSREEYAKKLKKLGIPVDE-D---EIITSGMAAAEYLKEHKGGKKVYVLGSDGLREELREAGF 100 (101)
T ss_dssp TSEEEEEES-SSS-HHHHHHHHHHTTTT--G-G---GEEEHHHHHHHHHHHHTTSSEEEEES-HHHHHHHHHTTE
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHhcCcCCCc-C---EEEChHHHHHHHHHhcCCCCEEEEEcCHHHHHHHHHcCC
Confidence 35556666554 24678888888886321 1 01 145667778887 68999999999999999988774
No 53
>PF08211 dCMP_cyt_deam_2: Cytidine and deoxycytidylate deaminase zinc-binding region ; InterPro: IPR013171 This region contains the zinc-binding domain of cytidine and deoxycytidylate deaminase. Cytidine deaminase (3.5.4.5 from EC) (cytidine aminohydrolase) catalyzes the hydrolysis of cytidine into uridine and ammonia while deoxycytidylate deaminase (3.5.4.12 from EC) (dCMP deaminase) hydrolyzes dCMP into dUMP. Both enzymes are known to bind zinc and to require it for their catalytic activity [, ]. These two enzymes do not share any sequence similarity with the exception of a region that contains three conserved histidine and cysteine residues which are thought to be involved in the binding of the catalytic zinc ion.; GO: 0004126 cytidine deaminase activity, 0008270 zinc ion binding; PDB: 1CTU_A 1AF2_A 1ALN_A 1CTT_A 4EG2_C.
Probab=72.47 E-value=21 Score=29.23 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=35.2
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCC---CCCCcHHHHHHHHHHhcCCCCCC
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS---PGGNHAEIDALLNAAAQGYDVYN 61 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~---~~~~HaE~~a~~~~~~~~~~~~~ 61 (352)
+.|++.|+++..-...-.+|++|.. +|+|..-.|-.. +++..+.+.||..+...|.....
T Consensus 38 ~~A~~Aa~~syaPYS~~~sGvAL~~~~G~i~~G~y~EnAAfNPSl~PlQ~AL~~~~~~G~~~~~ 101 (124)
T PF08211_consen 38 QAALEAANRSYAPYSKCPSGVALLTSDGRIYTGRYAENAAFNPSLPPLQAALVQAVLAGKDFED 101 (124)
T ss_dssp HHHHHHHCT-B-TTT---EEEEEEETTS-EEEEE-B--TTSTT-B-HHHHHHHHHHHTT--GGG
T ss_pred HHHHHHHHhccCCccCCceeEEEEeCCCCEEEEEEEeecccCCChHHHHHHHHHHHHcCCChhh
Confidence 4688888888433334449999997 888875443222 47899999999999777665443
No 54
>PF04263 TPK_catalytic: Thiamin pyrophosphokinase, catalytic domain; InterPro: IPR007371 Thiamin pyrophosphokinase (TPK, 2.7.6.2 from EC) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamin) to form the coenzyme thiamin pyrophosphate (TPP). Thus, TPK is important for the formation of a coenzyme required for central metabolic functions. The structure of thiamin pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis [].; GO: 0004788 thiamine diphosphokinase activity, 0005524 ATP binding, 0009229 thiamine diphosphate biosynthetic process; PDB: 2F17_B 1IG3_B 3S4Y_B 2OMK_B 1IG0_A 3MEL_B 3CQ9_A 3LM8_B 3K94_B 3L8M_B ....
Probab=71.35 E-value=13 Score=30.32 Aligned_cols=45 Identities=16% Similarity=0.180 Sum_probs=35.5
Q ss_pred hhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecH
Q psy14502 244 MKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGY 289 (352)
Q Consensus 244 ~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~ 289 (352)
+..+.+++.|++++..+ +.+..|++.+++.+.+.+...|.+.|+-
T Consensus 50 ~~~~~~~~~~~~~~~~p-~kD~TD~e~Al~~~~~~~~~~i~v~Ga~ 94 (123)
T PF04263_consen 50 EVLEFYKSKGVEIIHFP-EKDYTDLEKALEYAIEQGPDEIIVLGAL 94 (123)
T ss_dssp HHHHHHHHCTTEEEEE--STTS-HHHHHHHHHHHTTTSEEEEES-S
T ss_pred HHHHHHHhhccceeccc-ccccCHHHHHHHHHHHCCCCEEEEEecC
Confidence 44566778899998888 5668899999999999999999999863
No 55
>cd07995 TPK Thiamine pyrophosphokinase. Thiamine pyrophosphokinase (TPK, EC:2.7.6.2, also spelled thiamin pyrophosphokinase) catalyzes the transfer of a pyrophosphate group from ATP to vitamin B1 (thiamine) to form the coenzyme thiamine pyrophosphate (TPP). TPP is required for central metabolic functions, and thiamine deficiency is associated with potentially fatal human diseases. The structure of thiamine pyrophosphokinase suggests that the enzyme may operate by a mechanism of pyrophosphoryl transfer similar to those described for pyrophosphokinases functioning in nucleotide biosynthesis.
Probab=64.97 E-value=20 Score=31.83 Aligned_cols=47 Identities=19% Similarity=0.241 Sum_probs=39.8
Q ss_pred hhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecH
Q psy14502 243 PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGY 289 (352)
Q Consensus 243 ~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~ 289 (352)
++.++.+++.+++++..+.+++..|.+.+++.+.+++...|++.|+-
T Consensus 54 ~~~~~~~~~~~~~~~~~p~~KD~TD~e~Al~~~~~~~~~~i~i~Ga~ 100 (208)
T cd07995 54 PEVLEYYKSKGVEIIHFPDEKDFTDFEKALKLALERGADEIVILGAT 100 (208)
T ss_pred HHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHHHcCCCEEEEEccC
Confidence 44556677788999999887778999999999999999999999853
No 56
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=62.62 E-value=29 Score=31.69 Aligned_cols=117 Identities=15% Similarity=0.015 Sum_probs=67.3
Q ss_pred CCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhh-----------eeccccccccCcce
Q psy14502 76 YTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEI-----------NIGFFSRMQRGIPW 144 (352)
Q Consensus 76 ~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l-----------~~~f~~~~~~~rP~ 144 (352)
|+-.|...++++|+.||++|..--.. ...-.+.+++.|-++..++-.+..+.. ...+..+....--.
T Consensus 85 Rs~~~v~~ll~~G~~rViiGt~av~~--p~~v~~~~~~~g~rivv~lD~r~g~vav~GW~e~s~~~~~~l~~~~~~~g~~ 162 (241)
T COG0106 85 RSLEDVEALLDAGVARVIIGTAAVKN--PDLVKELCEEYGDRIVVALDARDGKVAVSGWQEDSGVELEELAKRLEEVGLA 162 (241)
T ss_pred CCHHHHHHHHHCCCCEEEEecceecC--HHHHHHHHHHcCCcEEEEEEccCCccccccccccccCCHHHHHHHHHhcCCC
Confidence 88899999999999999999742110 112346666666555443221111111 11222222233344
Q ss_pred EEEEeecCCCCccccCCCCcc-----cc-------CCHhHHHHHHHHHh--ccceEEEcccccc
Q psy14502 145 VRMKIASSLDNKTSLYNNSSQ-----WI-------TSKESRNDSHIWRA--RSCAILTGIGTVL 194 (352)
Q Consensus 145 V~~~~a~SlDG~ia~~~g~~~-----~i-------~~~~~~~~~~~lr~--~~Dail~G~~T~~ 194 (352)
-++.-.+|.||...++|-+.. |. .|-.+..++..+.. ....+++|+.-|.
T Consensus 163 ~ii~TdI~~DGtl~G~n~~l~~~l~~~~~ipviaSGGv~s~~Di~~l~~~~G~~GvIvG~ALy~ 226 (241)
T COG0106 163 HILYTDISRDGTLSGPNVDLVKELAEAVDIPVIASGGVSSLDDIKALKELSGVEGVIVGRALYE 226 (241)
T ss_pred eEEEEecccccccCCCCHHHHHHHHHHhCcCEEEecCcCCHHHHHHHHhcCCCcEEEEehHHhc
Confidence 567788999999999876531 11 12223344444444 4788899987765
No 57
>PRK11761 cysM cysteine synthase B; Provisional
Probab=62.56 E-value=15 Score=34.64 Aligned_cols=49 Identities=12% Similarity=0.228 Sum_probs=29.7
Q ss_pred EEEEcCCCCCCCCCcccc---CCceEEEEcCC-ChhhHHHHHhCCcEEEEecC
Q psy14502 213 RIVIDSYLRIDPFFRVLK---GGGSCIFTATD-LPMKRKILEDLGHEVIVLPN 261 (352)
Q Consensus 213 ~vvv~~~~~~~~~~~~~~---~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~ 261 (352)
.||..++++.-....... +.+.+|+..+. ++.+...++..|.+++.++.
T Consensus 65 ~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~~~~ 117 (296)
T PRK11761 65 TLIEATSGNTGIALAMIAAIKGYRMKLIMPENMSQERRAAMRAYGAELILVPK 117 (296)
T ss_pred EEEEeCCChHHHHHHHHHHHcCCCEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 356666665432222221 56677776654 55677777888888887764
No 58
>PRK00881 purH bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional
Probab=61.74 E-value=99 Score=31.59 Aligned_cols=103 Identities=19% Similarity=0.153 Sum_probs=68.6
Q ss_pred HHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeC-CCCCCCCCCcchHH
Q psy14502 5 LQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITL-EPCSYFGYTPPCTE 82 (352)
Q Consensus 5 ~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~-ePC~~~g~t~~C~~ 82 (352)
+..|++. .....|. + |+++||.+|+.|.-+.. ..++--.|++++.+.+..+.|+++-.-. -|= +.|..
T Consensus 401 l~faw~v~K~vkSNa-I--Vvvkd~~~vgIgaGQ~s-Rvd~t~~Ai~rag~~~~~~~gav~aSDafFPf------~Dtie 470 (513)
T PRK00881 401 LLFAWKVVKHVKSNA-I--VYAKDGQTVGIGAGQMS-RVDSARIAIEKAGDAGLDLKGAVLASDAFFPF------RDGVE 470 (513)
T ss_pred HHHHHHHHHhcCCCc-E--EEEeCCeEEEECCCCcc-hHHHHHHHHHHHHHhccCcCCeEEEeeCCCCc------hhHHH
Confidence 3445544 3445555 4 88899999998874433 3466667888886656667888776433 244 57999
Q ss_pred HHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 83 ALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 83 ~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
....+||+.|+.-.-.-+ ....++.-.++||-++.
T Consensus 471 ~aa~~Gv~aIiqPgGSir---D~evI~aAne~gIamvf 505 (513)
T PRK00881 471 AAAKAGITAIIQPGGSIR---DEEVIAAADEHGIAMVF 505 (513)
T ss_pred HHHHcCCeEEEeCCCCCC---hHHHHHHHHHcCCEEEE
Confidence 999999998886432211 23467777788887653
No 59
>TIGR01378 thi_PPkinase thiamine pyrophosphokinase. This model has been revised. Originally, it described strictly eukaryotic thiamine pyrophosphokinase. However, it is now expanded to include also homologous enzymes, apparently functionally equivalent, from species that rely on thiamine pyrophosphokinase rather than thiamine-monophosphate kinase (TIGR01379) to produce the active TPP cofactor. This includes the thiamine pyrophosphokinase from Bacillus subtilis, previously designated YloS.
Probab=61.06 E-value=23 Score=31.44 Aligned_cols=45 Identities=20% Similarity=0.292 Sum_probs=37.0
Q ss_pred hhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeec
Q psy14502 244 MKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288 (352)
Q Consensus 244 ~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG 288 (352)
+.++.+++.+++++..+.+.+..|.+.+++.+.+++...|++.|+
T Consensus 51 ~~~~~~~~~~~~~~~~~~eKD~TD~e~Al~~~~~~~~~~i~i~Ga 95 (203)
T TIGR01378 51 EELDFYKKAGVKIIVFPPEKDTTDLELALKYALERGADEITILGA 95 (203)
T ss_pred HHHHHHHHcCCceEEcCCCCCCCHHHHHHHHHHHCCCCEEEEEcC
Confidence 344566778888888887777889999999999999999999973
No 60
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=57.71 E-value=19 Score=29.73 Aligned_cols=42 Identities=21% Similarity=0.380 Sum_probs=32.7
Q ss_pred CCcHHHHHHHHHHhcC---CCCC--CeEEEEeCCCCCCCCCCcchHHHHHHhC
Q psy14502 41 GNHAEIDALLNAAAQG---YDVY--NSTVYITLEPCSYFGYTPPCTEALIKSG 88 (352)
Q Consensus 41 ~~HaE~~a~~~~~~~~---~~~~--~~~ly~t~ePC~~~g~t~~C~~~i~~~g 88 (352)
...+|...|+..+++- .... --+||+.+.||. .|...|.+..
T Consensus 73 ~~DsE~KiL~~ia~~l~~~~~~~~G~i~l~te~~pC~------SC~~vi~qF~ 119 (133)
T PF14424_consen 73 NNDSEYKILEDIAKKLGDNPDPSGGTIDLFTELPPCE------SCSNVIEQFK 119 (133)
T ss_pred cccHHHHHHHHHHHHhccccccCCceEEEEecCCcCh------hHHHHHHHHH
Confidence 3689999999998862 2222 468999999995 9999888753
No 61
>PF14428 SCP1201-deam: SCP1.201-like deaminase
Probab=56.11 E-value=18 Score=29.98 Aligned_cols=41 Identities=24% Similarity=0.263 Sum_probs=30.4
Q ss_pred CCcHHHHHHHHHHhcCCCCCCeEEEEe-CCCCCCCCCCcchHHHHHH
Q psy14502 41 GNHAEIDALLNAAAQGYDVYNSTVYIT-LEPCSYFGYTPPCTEALIK 86 (352)
Q Consensus 41 ~~HaE~~a~~~~~~~~~~~~~~~ly~t-~ePC~~~g~t~~C~~~i~~ 86 (352)
..|.|.++...+.+ ...+..+||++ -.||.-. --|..++-.
T Consensus 68 ~~HVE~k~Aa~Mr~--~g~~~a~vvIN~n~pC~~~---~gC~~~l~~ 109 (135)
T PF14428_consen 68 ASHVEGKAAAWMRR--NGIKHATVVINPNGPCGGR---DGCDQLLPA 109 (135)
T ss_pred hhhhhHHHHHHHHH--cCCeEEEEEEeCCCCCCCc---cCHHHHHHH
Confidence 46999999888865 45578999999 9999621 128776554
No 62
>PF02593 dTMP_synthase: Thymidylate synthase; InterPro: IPR003745 This entry describes proteins of unknown function.
Probab=52.59 E-value=26 Score=31.60 Aligned_cols=90 Identities=22% Similarity=0.276 Sum_probs=59.8
Q ss_pred CCCeEEEEe--CCCCCCCCCCcch--HHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecc----hhhhhhhh
Q psy14502 59 VYNSTVYIT--LEPCSYFGYTPPC--TEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGL----MQKEAYEI 130 (352)
Q Consensus 59 ~~~~~ly~t--~ePC~~~g~t~~C--~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~----~~~~~~~l 130 (352)
+..+.|+++ +-|-. .. ...+..+|++-|+.+..+|.+.....-.+.+++.|+++..+- |++.....
T Consensus 49 i~~~Dl~I~y~lHPDl------~~~l~~~~~e~g~kavIvp~~~~~~g~~~~lk~~~e~~gi~~~~P~~~CsL~~~~~p~ 122 (217)
T PF02593_consen 49 IPEADLLIAYGLHPDL------TYELPEIAKEAGVKAVIVPSESPKPGLRRQLKKQLEEFGIEVEFPKPFCSLEENGNPQ 122 (217)
T ss_pred CCCCCEEEEeccCchh------HHHHHHHHHHcCCCEEEEecCCCccchHHHHHHHHHhcCceeecCccccccCCCCChh
Confidence 567777775 55664 21 122233899999999888874333344677888899998631 33333445
Q ss_pred eeccccccccCcceEEEEeecCCCCcccc
Q psy14502 131 NIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (352)
Q Consensus 131 ~~~f~~~~~~~rP~V~~~~a~SlDG~ia~ 159 (352)
...|..+ -++|.+-+.+- ||+|..
T Consensus 123 i~~F~~~--fGkP~~ei~v~---~~~I~~ 146 (217)
T PF02593_consen 123 IDEFAEY--FGKPKVEIEVE---NGKIKD 146 (217)
T ss_pred HHHHHHH--hCCceEEEEec---CCcEEE
Confidence 5667665 78999998876 899864
No 63
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=49.37 E-value=26 Score=29.35 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=27.5
Q ss_pred CCCHHHHHHHHHhCCCCEEEEeecHHHHHH----HHHcCCCcEEE
Q psy14502 265 KVDLQAVIIELGKRKINELHIEAGYQLNTA----LILEGCVDELL 305 (352)
Q Consensus 265 ~~dl~~~l~~L~~~g~~~i~veGG~~l~~~----fl~~gLvDEi~ 305 (352)
......+++.|+++|.++|++.+||.+.-+ |-+.| +|+++
T Consensus 77 ~~l~~~lve~lre~G~~~i~v~~GGvip~~d~~~l~~~G-~~~if 120 (143)
T COG2185 77 LTLVPGLVEALREAGVEDILVVVGGVIPPGDYQELKEMG-VDRIF 120 (143)
T ss_pred HHHHHHHHHHHHHhCCcceEEeecCccCchhHHHHHHhC-cceee
Confidence 346788888888889999886666666544 44444 46654
No 64
>PRK10444 UMP phosphatase; Provisional
Probab=47.53 E-value=65 Score=29.45 Aligned_cols=67 Identities=13% Similarity=-0.006 Sum_probs=42.7
Q ss_pred CCceEEEEcCCC---hhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCC
Q psy14502 231 GGGSCIFTATDL---PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300 (352)
Q Consensus 231 ~~~~~v~t~~~~---~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gL 300 (352)
+.+++++|.+.. ..+.+.+...|+.+- .+.--.....+.+.|++.+.+++++.|...+...|.+.|+
T Consensus 33 g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~---~~~i~ts~~~~~~~L~~~~~~~v~~~g~~~l~~~l~~~g~ 102 (248)
T PRK10444 33 GLPLVLLTNYPSQTGQDLANRFATAGVDVP---DSVFYTSAMATADFLRRQEGKKAYVIGEGALIHELYKAGF 102 (248)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHcCCCCC---HhhEecHHHHHHHHHHhCCCCEEEEEcCHHHHHHHHHCcC
Confidence 455555555542 346777887787421 0000113456667787776678999999999999988775
No 65
>KOG3076|consensus
Probab=47.32 E-value=1.4e+02 Score=26.27 Aligned_cols=77 Identities=18% Similarity=0.239 Sum_probs=46.9
Q ss_pred EEEEcCCChhhHHHHHhCCcEEEEecCC---CC-CCCHHHHHHHHHhCCCCEEEEeecHHH--HHHHHHcCCCcEEEEEE
Q psy14502 235 CIFTATDLPMKRKILEDLGHEVIVLPNN---LG-KVDLQAVIIELGKRKINELHIEAGYQL--NTALILEGCVDELLLYI 308 (352)
Q Consensus 235 ~v~t~~~~~~~~~~l~~~g~~v~~~~~~---~~-~~dl~~~l~~L~~~g~~~i~veGG~~l--~~~fl~~gLvDEi~l~i 308 (352)
+|++.......+..+++.|+.+.+++.. +. ..| .++-+.|.+.|. ++++.+|-.. -..|+++ +-.-.|.|
T Consensus 40 lviSnk~~~~GL~rA~~~gIPt~vip~k~~a~R~~~d-~eL~~~l~e~~~-d~v~lAG~M~iLs~~fl~~--~~~~iiNI 115 (206)
T KOG3076|consen 40 LVISNKKGVYGLERAADAGIPTLVIPHKRFASREKYD-NELAEVLLELGT-DLVCLAGYMRILSGEFLSQ--LPKRIINI 115 (206)
T ss_pred EEEeccccchhhhHHHHCCCCEEEeccccccccccCc-HHHHHHHHHhCC-CEEEehhhHHHcCHHHHhh--cccceEec
Confidence 3444444445566777777776655541 11 234 566666676654 6777777663 3667765 34448999
Q ss_pred eceeecC
Q psy14502 309 SPILIGE 315 (352)
Q Consensus 309 ~P~ilG~ 315 (352)
+|-+++.
T Consensus 116 HPaLlpa 122 (206)
T KOG3076|consen 116 HPALLPA 122 (206)
T ss_pred ccccccc
Confidence 9999875
No 66
>KOG1251|consensus
Probab=46.81 E-value=1.2e+02 Score=28.15 Aligned_cols=97 Identities=14% Similarity=0.130 Sum_probs=61.7
Q ss_pred CCCeEEEEcCCCCCCC----CCccccCCceEEEEc-CCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC-CCC-
Q psy14502 209 HQPYRIVIDSYLRIDP----FFRVLKGGGSCIFTA-TDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KIN- 281 (352)
Q Consensus 209 ~~p~~vvv~~~~~~~~----~~~~~~~~~~~v~t~-~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~-g~~- 281 (352)
+.+.-||..++++... .+++. +.|..|+.. +.+..+....+.-|..++++... ..|=+++-++|.++ |+-
T Consensus 71 k~~kgvithSSGNHaqAlalaAk~~-giPa~IVvP~~AP~~Kv~a~~~Yga~ii~~e~~--~~sRE~va~~ltee~g~~~ 147 (323)
T KOG1251|consen 71 KRAKGVITHSSGNHAQALALAAKIL-GIPATIVVPKDAPICKVAATRGYGANIIFCEPT--VESRESVAKDLTEETGYYL 147 (323)
T ss_pred hhcCceEeecCCcHHHHHHHHHHhc-CCCeEEEecCCChHHHHHHHHhcCceEEEecCc--cchHHHHHHHHHHhcCcEE
Confidence 4566678788876432 22332 455544444 44666777888889999998753 33556666666654 431
Q ss_pred ------EEEEeecHHHHHHHHHc-CCCcEEEEEE
Q psy14502 282 ------ELHIEAGYQLNTALILE-GCVDELLLYI 308 (352)
Q Consensus 282 ------~i~veGG~~l~~~fl~~-gLvDEi~l~i 308 (352)
--++-|=++.+-++|++ |.||-+++-+
T Consensus 148 i~Py~~p~vIaGqgTiA~ElleqVg~iDalfvpv 181 (323)
T KOG1251|consen 148 IHPYNHPSVIAGQGTIALELLEQVGEIDALFVPV 181 (323)
T ss_pred eCCCCCcceeeccchHHHHHHHhhCccceEEEee
Confidence 22456778999999976 7777776543
No 67
>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators. The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....
Probab=46.30 E-value=93 Score=28.72 Aligned_cols=42 Identities=19% Similarity=0.139 Sum_probs=29.9
Q ss_pred HHHHHHHHHhCCCCE-EEEeecHH-----------HHHHHHHcCC-CcEEEEEEe
Q psy14502 268 LQAVIIELGKRKINE-LHIEAGYQ-----------LNTALILEGC-VDELLLYIS 309 (352)
Q Consensus 268 l~~~l~~L~~~g~~~-i~veGG~~-----------l~~~fl~~gL-vDEi~l~i~ 309 (352)
..++.+.|.++|.++ |.+.+|+. .-.++-++|+ +++..+...
T Consensus 106 ~~~a~~~Li~~Gh~~~I~~i~~~~~~~~~~~R~~Gy~~Al~~~Gl~~~~~~i~~~ 160 (279)
T PF00532_consen 106 GYEATEYLIKKGHRRPIAFIGGPEDSSTSRERLQGYRDALKEAGLPIDEEWIFEG 160 (279)
T ss_dssp HHHHHHHHHHTTCCSTEEEEEESTTTHHHHHHHHHHHHHHHHTTSCEEEEEEEES
T ss_pred HHHHHHHHHhcccCCeEEEEecCcchHHHHHHHHHHHHHHHHcCCCCCccccccc
Confidence 457888899999999 88888863 2355666788 666555443
No 68
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=44.88 E-value=1.7e+02 Score=23.94 Aligned_cols=63 Identities=14% Similarity=0.153 Sum_probs=43.0
Q ss_pred HHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEee--c------HHHHHHHHHcCCCcEEEEEEeceeecCCC
Q psy14502 246 RKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA--G------YQLNTALILEGCVDELLLYISPILIGEAY 317 (352)
Q Consensus 246 ~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veG--G------~~l~~~fl~~gLvDEi~l~i~P~ilG~g~ 317 (352)
...|+..|++++.++. ...++++++...+.+..-|.+.+ | ..+...+-++|+=| .|+++|+..
T Consensus 20 ~~~L~~~GfeVidLG~---~v~~e~~v~aa~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl~~------v~vivGG~~ 90 (128)
T cd02072 20 DHAFTEAGFNVVNLGV---LSPQEEFIDAAIETDADAILVSSLYGHGEIDCKGLREKCDEAGLKD------ILLYVGGNL 90 (128)
T ss_pred HHHHHHCCCEEEECCC---CCCHHHHHHHHHHcCCCEEEEeccccCCHHHHHHHHHHHHHCCCCC------CeEEEECCC
Confidence 3577889999999986 47899999999887665555433 1 23445555556633 467778873
No 69
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=43.36 E-value=39 Score=27.50 Aligned_cols=39 Identities=28% Similarity=0.316 Sum_probs=29.7
Q ss_pred CCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 76 YTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 76 ~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
+..+-+..|+..|+.-|+.+.--| ++.+.|+++||+|..
T Consensus 53 ~G~~~a~~l~~~gvdvvi~~~iG~------~a~~~l~~~GIkv~~ 91 (121)
T COG1433 53 AGIRIAELLVDEGVDVVIASNIGP------NAYNALKAAGIKVYV 91 (121)
T ss_pred chHHHHHHHHHcCCCEEEECccCH------HHHHHHHHcCcEEEe
Confidence 334567888899999888765434 378999999999987
No 70
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=42.28 E-value=70 Score=30.47 Aligned_cols=131 Identities=16% Similarity=0.143 Sum_probs=67.9
Q ss_pred cceEEEEeecCCCCccccCCCCccccCCHhHHHHHHH---HHhccceEEEccccccccCCCcccC----CCC-CCCCCeE
Q psy14502 142 IPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHI---WRARSCAILTGIGTVLKDNPRLNVR----SIK-TSHQPYR 213 (352)
Q Consensus 142 rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~---lr~~~Dail~G~~T~~~d~p~l~~r----~~~-~~~~p~~ 213 (352)
.-.+-+++.-.-||....-++....++..+-..+... +....|.+++...-- |.++.+ +.. ...+-.+
T Consensus 86 ~TRinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP----~g~~~d~y~~li~~~~~~g~~ 161 (310)
T COG1105 86 DTRINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLP----PGVPPDAYAELIRILRQQGAK 161 (310)
T ss_pred CCeeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCC----CCCCHHHHHHHHHHHHhcCCe
Confidence 3445556666666666666665555655444444443 345678777766431 122211 111 1234578
Q ss_pred EEEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHh-CCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHH
Q psy14502 214 IVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILED-LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ 290 (352)
Q Consensus 214 vvv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~-~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~ 290 (352)
|++|.++..= ...+ +.+.|++=.+ .++++. .|.++-. ..|...+.++|.++|+.+|+|.=|+.
T Consensus 162 vilD~Sg~~L--~~~L-~~~P~lIKPN-----~~EL~~~~g~~~~~------~~d~i~~a~~l~~~g~~~ViVSlG~~ 225 (310)
T COG1105 162 VILDTSGEAL--LAAL-EAKPWLIKPN-----REELEALFGRELTT------LEDVIKAARELLAEGIENVIVSLGAD 225 (310)
T ss_pred EEEECChHHH--HHHH-ccCCcEEecC-----HHHHHHHhCCCCCC------hHHHHHHHHHHHHCCCCEEEEEecCc
Confidence 9999887510 0111 2223333222 223332 1221111 23777778888889999999977654
No 71
>PRK08197 threonine synthase; Validated
Probab=41.21 E-value=70 Score=31.37 Aligned_cols=84 Identities=14% Similarity=0.124 Sum_probs=41.6
Q ss_pred EEEEcCCCCCCCCCcccc---CCceEEEEcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHh-CC-------C
Q psy14502 213 RIVIDSYLRIDPFFRVLK---GGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGK-RK-------I 280 (352)
Q Consensus 213 ~vvv~~~~~~~~~~~~~~---~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~-~g-------~ 280 (352)
.||..++|+.-.....+. +.++.|+.... +..+...++..|.+++.++.+ ..|..+..+++.+ .| .
T Consensus 129 ~vv~aSsGN~g~alA~~aa~~G~~~~v~vp~~~~~~k~~~~~~~GA~Vi~v~~~--~~~~~~~a~~~~~~~g~~~~~~~~ 206 (394)
T PRK08197 129 HLAMPTNGNAGAAWAAYAARAGIRATIFMPADAPEITRLECALAGAELYLVDGL--ISDAGKIVAEAVAEYGWFDVSTLK 206 (394)
T ss_pred EEEEeCCcHHHHHHHHHHHHcCCcEEEEEcCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCcccccCCC
Confidence 355555664332222222 45566665543 445566677777777766531 1122223333322 23 2
Q ss_pred CEEEEeecHHHHHHHHHc
Q psy14502 281 NELHIEAGYQLNTALILE 298 (352)
Q Consensus 281 ~~i~veGG~~l~~~fl~~ 298 (352)
+...++|-.+++-+++++
T Consensus 207 np~~ieG~~t~a~Ei~eQ 224 (394)
T PRK08197 207 EPYRIEGKKTMGLELAEQ 224 (394)
T ss_pred CccchhcHHHHHHHHHHH
Confidence 445566666666666654
No 72
>cd03174 DRE_TIM_metallolyase DRE-TIM metallolyase superfamily. The DRE-TIM metallolyase superfamily includes 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. In addition, the catalytic site includes three invariant residues - an aspartate (D), an arginine (R), and a glutamate (E) - which is the basis for the domain name "DRE-TIM".
Probab=41.03 E-value=75 Score=28.81 Aligned_cols=69 Identities=16% Similarity=0.107 Sum_probs=49.7
Q ss_pred ChhhHHHHHhCCcEEEEecCCCCC------CCHHHHHHHHHhCC--CCE-EEEeecHHHHHHHHHcCCCcEEEEEEece
Q psy14502 242 LPMKRKILEDLGHEVIVLPNNLGK------VDLQAVIIELGKRK--INE-LHIEAGYQLNTALILEGCVDELLLYISPI 311 (352)
Q Consensus 242 ~~~~~~~l~~~g~~v~~~~~~~~~------~dl~~~l~~L~~~g--~~~-i~veGG~~l~~~fl~~gLvDEi~l~i~P~ 311 (352)
....+..+.+.|+.++.++..... -|..++++.+.+.+ .+- +++-.|...+..+.+.| +|.+.+.+...
T Consensus 21 ~~~i~~~L~~~GV~~IEvg~~~~~~~~p~~~~~~~~i~~l~~~~~~~~~~~l~~~~~~~i~~a~~~g-~~~i~i~~~~s 98 (265)
T cd03174 21 KLEIAEALDEAGVDSIEVGSGASPKAVPQMEDDWEVLRAIRKLVPNVKLQALVRNREKGIERALEAG-VDEVRIFDSAS 98 (265)
T ss_pred HHHHHHHHHHcCCCEEEeccCcCccccccCCCHHHHHHHHHhccCCcEEEEEccCchhhHHHHHhCC-cCEEEEEEecC
Confidence 334567788889999888753323 58889999999875 333 44556677888888887 79998887544
No 73
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=39.15 E-value=98 Score=22.96 Aligned_cols=39 Identities=10% Similarity=-0.003 Sum_probs=21.7
Q ss_pred eEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHH
Q psy14502 234 SCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELG 276 (352)
Q Consensus 234 ~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~ 276 (352)
..+++..-.......|.+.|++++... ..++.++++.+.
T Consensus 55 ~~li~~~iG~~~~~~L~~~gI~v~~~~----~~~i~~~l~~~~ 93 (94)
T PF02579_consen 55 DVLICGGIGEGAFRALKEAGIKVYQGA----GGDIEEALEAYL 93 (94)
T ss_dssp SEEEESCSCHHHHHHHHHTTSEEEEST----SSBHHHHHHHHH
T ss_pred CEEEEeCCCHHHHHHHHHCCCEEEEcC----CCCHHHHHHHHh
Confidence 344444445555566666666666653 346666666553
No 74
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=38.90 E-value=65 Score=30.16 Aligned_cols=98 Identities=11% Similarity=0.174 Sum_probs=50.7
Q ss_pred EEEEcCCCCCCCCCcccc---CCceEEEEcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC-C------CC
Q psy14502 213 RIVIDSYLRIDPFFRVLK---GGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-K------IN 281 (352)
Q Consensus 213 ~vvv~~~~~~~~~~~~~~---~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~-g------~~ 281 (352)
.||..++++.-....... +.+.+|+..+. +..+...++..|.+++.++.+.+..+..+..++|.+. + +.
T Consensus 61 ~vv~aSsGN~g~alA~~a~~~G~~~~i~~p~~~~~~k~~~~~~~GA~v~~v~~~~~~~~~~~~a~~l~~~~~~~~~~~~~ 140 (290)
T TIGR01138 61 VLIEATSGNTGIALAMIAALKGYRMKLLMPDNMSQERKAAMRAYGAELILVTKEEGMEGARDLALELANRGEGKLLDQFN 140 (290)
T ss_pred EEEEECCChHHHHHHHHHHHcCCeEEEEECCCCCHHHHHHHHHcCCEEEEeCCCCChHHHHHHHHHHHHhCCCCCCCccC
Confidence 355566665432222222 56677777665 5667777888888888776421112233455555543 2 11
Q ss_pred E-EEEeec-HHHHHHHHHcCCCcEEEEEEece
Q psy14502 282 E-LHIEAG-YQLNTALILEGCVDELLLYISPI 311 (352)
Q Consensus 282 ~-i~veGG-~~l~~~fl~~gLvDEi~l~i~P~ 311 (352)
+ .-.+|+ .++.-+++++-- .++...+.|+
T Consensus 141 ~~~~~~~~~~t~~~Ei~~q~~-~~~d~iv~~v 171 (290)
T TIGR01138 141 NPDNPYAHYTSTGPEIWQQTG-GRITHFVSSM 171 (290)
T ss_pred CcccHHHHhHhHHHHHHHHcC-CCCCEEEECC
Confidence 1 223454 566677766511 1233446666
No 75
>PLN02714 thiamin pyrophosphokinase
Probab=38.59 E-value=85 Score=28.39 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=35.7
Q ss_pred hhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC------CCCEEEEeec
Q psy14502 243 PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR------KINELHIEAG 288 (352)
Q Consensus 243 ~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~------g~~~i~veGG 288 (352)
++-+..++.+|++++..+.+++..|...+++.+.++ |...|++.|+
T Consensus 67 ~e~~~~~~~~~~~i~~~~~eKD~TD~e~Al~~~~~~~~~~~~~~~~I~v~Ga 118 (229)
T PLN02714 67 PEVLDFYSNLGTKIVDESHDQDTTDLHKCIAYIRDSTPDLDKSNLCILVLGA 118 (229)
T ss_pred HHHHHHHHHCCCEEEECCCCcccCHHHHHHHHHHHhccccccCCceEEEEcc
Confidence 444567778899988888777788999999988743 4578999884
No 76
>PRK08246 threonine dehydratase; Provisional
Probab=37.65 E-value=80 Score=29.87 Aligned_cols=94 Identities=17% Similarity=0.139 Sum_probs=54.6
Q ss_pred EEEEcCCCCCCCCCcccc---CCceEEEEcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHH-hCCC-------
Q psy14502 213 RIVIDSYLRIDPFFRVLK---GGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELG-KRKI------- 280 (352)
Q Consensus 213 ~vvv~~~~~~~~~~~~~~---~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~-~~g~------- 280 (352)
.||..++|+.-....... +.+..|+..+. ++.+...++..|.+++.++.+ ..+..+..+++. +.|.
T Consensus 70 ~vv~aSsGN~g~a~A~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~g~~~~~~~~ 147 (310)
T PRK08246 70 GVVAASGGNAGLAVAYAAAALGVPATVFVPETAPPAKVARLRALGAEVVVVGAE--YADALEAAQAFAAETGALLCHAYD 147 (310)
T ss_pred eEEEeCCCHHHHHHHHHHHHcCCCEEEEECCCCcHHHHHHHHHCCCEEEEeCCC--HHHHHHHHHHHHHhcCCEeCCCCC
Confidence 356666665332222221 56777777654 556778888999998888641 112222333333 3342
Q ss_pred CEEEEeecHHHHHHHHHc-CCCcEEEEEEece
Q psy14502 281 NELHIEAGYQLNTALILE-GCVDELLLYISPI 311 (352)
Q Consensus 281 ~~i~veGG~~l~~~fl~~-gLvDEi~l~i~P~ 311 (352)
+...++|..++..+++++ +-+|- .+.|+
T Consensus 148 n~~~i~g~~t~~~Ei~eq~~~~D~---iv~~v 176 (310)
T PRK08246 148 QPEVLAGAGTLGLEIEEQAPGVDT---VLVAV 176 (310)
T ss_pred ChhhhcchHHHHHHHHHhcCCCCE---EEEec
Confidence 344678888888888876 34564 44566
No 77
>cd08172 GlyDH-like1 Glycerol dehydrogenases-like. Glycerol dehydrogenases-like. The proteins in this family have not been characterized, but they show sequence homology with glycerol dehydrogenase. Glycerol dehydrogenases (GlyDH) is a key enzyme in the glycerol dissimilation pathway. In anaerobic conditions, many microorganisms utilize glycerol as a source of carbon through coupled oxidative and reductive pathways. One of the pathways involves the oxidation of glycerol to dihydroxyacetone with the reduction of NAD+ to NADH catalyzed by glycerol dehydrogenases. Dihydroxyacetone is then phosphorylated by dihydroxyacetone kinase and enters the glycolytic pathway for further degradation. The activity of GlyDH is zinc-dependent. The zinc ion plays a role in stabilizing an alkoxide intermediate at the active site.
Probab=37.60 E-value=69 Score=30.77 Aligned_cols=65 Identities=6% Similarity=-0.047 Sum_probs=40.1
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEEEEEeceeecCC
Q psy14502 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEA 316 (352)
Q Consensus 252 ~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~g 316 (352)
.++.+..++.....-++.++++.+++.++..|+-.|||+....-=-......+-+...|...|.|
T Consensus 49 ~~~~~~~~~~~p~~~~v~~~~~~~~~~~~D~iIavGGGs~~D~aK~ia~~~~~p~i~VPTT~gtg 113 (347)
T cd08172 49 GEAFVLRYDGECSEENIERLAAQAKENGADVIIGIGGGKVLDTAKAVADRLGVPVITVPTLAATC 113 (347)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHHHhCCCEEEecCccccC
Confidence 56666555432112346677777778888888889999865322111111245677889888876
No 78
>COG1171 IlvA Threonine dehydratase [Amino acid transport and metabolism]
Probab=34.26 E-value=1.2e+02 Score=29.31 Aligned_cols=98 Identities=18% Similarity=0.151 Sum_probs=61.8
Q ss_pred eEEEEcCCCCCCCC----CccccCCceEEEEcC-CChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC-CC-----
Q psy14502 212 YRIVIDSYLRIDPF----FRVLKGGGSCIFTAT-DLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KI----- 280 (352)
Q Consensus 212 ~~vvv~~~~~~~~~----~~~~~~~~~~v~t~~-~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~-g~----- 280 (352)
.-||..+.|+.... .+.+ +.|..|+... .+..+.+..+..|.+++..+++ ..|-...-++|.++ |.
T Consensus 75 ~gViaaSaGNHaQGvA~aa~~l-Gi~a~IvMP~~tp~~Kv~a~r~~GaeVil~g~~--~dda~~~a~~~a~~~G~~~i~p 151 (347)
T COG1171 75 AGVIAASAGNHAQGVAYAAKRL-GIKATIVMPETTPKIKVDATRGYGAEVILHGDN--FDDAYAAAEELAEEEGLTFVPP 151 (347)
T ss_pred CceEEecCCcHHHHHHHHHHHh-CCCEEEEecCCCcHHHHHHHHhcCCEEEEECCC--HHHHHHHHHHHHHHcCCEEeCC
Confidence 34777777764332 2222 5565555554 4677888999999999988753 23444444555554 54
Q ss_pred --CEEEEeecHHHHHHHHHcCCCcEE-EEEEeceeecCC
Q psy14502 281 --NELHIEAGYQLNTALILEGCVDEL-LLYISPILIGEA 316 (352)
Q Consensus 281 --~~i~veGG~~l~~~fl~~gLvDEi-~l~i~P~ilG~g 316 (352)
..-++.|=|++.-+++++ +.+. ...+.|+ |+|
T Consensus 152 fD~p~viAGQGTi~lEileq--~~~~~d~v~vpv--GGG 186 (347)
T COG1171 152 FDDPDVIAGQGTIALEILEQ--LPDLPDAVFVPV--GGG 186 (347)
T ss_pred CCCcceeecccHHHHHHHHh--ccccCCEEEEec--Ccc
Confidence 345667878999999976 3333 5556676 655
No 79
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=34.13 E-value=1.4e+02 Score=24.76 Aligned_cols=64 Identities=9% Similarity=0.108 Sum_probs=0.0
Q ss_pred CChhhHHHHHhCCcEEEEecCCCCCCC--HHHHHHHHHhCCCCEEEEeecHH----------HHHHHHHcCCCcEEE
Q psy14502 241 DLPMKRKILEDLGHEVIVLPNNLGKVD--LQAVIIELGKRKINELHIEAGYQ----------LNTALILEGCVDELL 305 (352)
Q Consensus 241 ~~~~~~~~l~~~g~~v~~~~~~~~~~d--l~~~l~~L~~~g~~~i~veGG~~----------l~~~fl~~gLvDEi~ 305 (352)
...+..+..++.+..++-+..-.+.-. .++.++.|+++|.+++.+..||. ....|.+.| +|.++
T Consensus 40 ~~e~~v~aa~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl~~~~vivGG~~vi~~~d~~~~~~~l~~~G-v~~vF 115 (134)
T TIGR01501 40 PQEEFIKAAIETKADAILVSSLYGHGEIDCKGLRQKCDEAGLEGILLYVGGNLVVGKQDFPDVEKRFKEMG-FDRVF 115 (134)
T ss_pred CHHHHHHHHHHcCCCEEEEecccccCHHHHHHHHHHHHHCCCCCCEEEecCCcCcChhhhHHHHHHHHHcC-CCEEE
No 80
>COG1710 Uncharacterized protein conserved in archaea [Function unknown]
Probab=33.20 E-value=49 Score=26.73 Aligned_cols=55 Identities=33% Similarity=0.306 Sum_probs=38.7
Q ss_pred CCeEEEEeCCCCCCCCCCcchHHHHHH-hCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 60 YNSTVYITLEPCSYFGYTPPCTEALIK-SGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 60 ~~~~ly~t~ePC~~~g~t~~C~~~i~~-~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
.-|.+|.+++|-- .-..+|.. +---++++....-.+.++.+-++.|++.||+|+.
T Consensus 27 ~~~eiyinlr~tr------~v~vallens~~vK~Ig~P~s~y~k~skkvlkaleq~gI~vIP 82 (139)
T COG1710 27 DVTEIYINLRPTR------EVIVALLENSPNVKVIGCPPSLYPKVSKKVLKALEQMGIKVIP 82 (139)
T ss_pred ccceEEEeecccH------HHHHHHHhcCCCcceecCCchhhhHHHHHHHHHHHhCCceEee
Confidence 3579999999995 77888887 4434455554444444555567788889999985
No 81
>PF14441 OTT_1508_deam: OTT_1508-like deaminase
Probab=31.79 E-value=87 Score=25.90 Aligned_cols=43 Identities=19% Similarity=0.212 Sum_probs=32.1
Q ss_pred CCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcchHHHHHHhC
Q psy14502 39 PGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSG 88 (352)
Q Consensus 39 ~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~C~~~i~~~g 88 (352)
.+..|||+..+....+. .....-.+=+|--||- +|...|...+
T Consensus 65 ~~~vHaE~~ll~~~~~~-~~~~~~yIG~SK~~C~------lC~~~~~~~~ 107 (142)
T PF14441_consen 65 KPSVHAEMQLLDHLERH-FDPPPRYIGCSKPSCF------LCYLYFQAHG 107 (142)
T ss_pred CCCeehHHHHHHHHHHh-cCCCCCEEEEeCchHH------hHHHHHHHhC
Confidence 46789999999998765 2234445556778894 8999888887
No 82
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=31.25 E-value=1.2e+02 Score=27.09 Aligned_cols=79 Identities=14% Similarity=0.165 Sum_probs=44.7
Q ss_pred eEEEEcCCChhhHHHHHhCCcEEEEecCCC---CCCCHHHHHHHHHhCCCCEEEEeecHH-HHHHHHHcCCCcEEEEEEe
Q psy14502 234 SCIFTATDLPMKRKILEDLGHEVIVLPNNL---GKVDLQAVIIELGKRKINELHIEAGYQ-LNTALILEGCVDELLLYIS 309 (352)
Q Consensus 234 ~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~---~~~dl~~~l~~L~~~g~~~i~veGG~~-l~~~fl~~gLvDEi~l~i~ 309 (352)
+.|++.+.....++..++.|++++..+..+ ....-+++++.|++.+..-+++.|=.. +-..|++. .-.=.+.++
T Consensus 30 ~~visn~~~~~~~~~A~~~gIp~~~~~~~~~~~~~~~~~~~~~~l~~~~~Dliv~agy~~il~~~~l~~--~~~~~iNiH 107 (207)
T PLN02331 30 VVVVTNKPGCGGAEYARENGIPVLVYPKTKGEPDGLSPDELVDALRGAGVDFVLLAGYLKLIPVELVRA--YPRSILNIH 107 (207)
T ss_pred EEEEEeCCCChHHHHHHHhCCCEEEeccccCCCcccchHHHHHHHHhcCCCEEEEeCcchhCCHHHHhh--CCCCEEEEe
Confidence 455565555544566778899888765421 123356778888888775555544122 22334432 111257788
Q ss_pred ceeec
Q psy14502 310 PILIG 314 (352)
Q Consensus 310 P~ilG 314 (352)
|-+|-
T Consensus 108 pSLLP 112 (207)
T PLN02331 108 PALLP 112 (207)
T ss_pred Ccccc
Confidence 87764
No 83
>KOG0879|consensus
Probab=31.03 E-value=38 Score=28.02 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=25.3
Q ss_pred hcCCCCCCeEEEEeCCCCCCCCCCcchHHHHHHhCCcEEEEEee
Q psy14502 54 AQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAIN 97 (352)
Q Consensus 54 ~~~~~~~~~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~ 97 (352)
..|.+..||..|.|+-+|. |.-=|.||||.-
T Consensus 114 NsG~~tNGCQFFITcakcd-------------fLD~KHVVFGrv 144 (177)
T KOG0879|consen 114 NSGKDTNGCQFFITCAKCD-------------FLDGKHVVFGRV 144 (177)
T ss_pred ccCCCCCCceEEEEecccc-------------cccCceEEEeee
Confidence 3377889999999999996 556688999863
No 84
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=30.69 E-value=3.7e+02 Score=23.55 Aligned_cols=68 Identities=18% Similarity=0.191 Sum_probs=44.9
Q ss_pred CCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeec----------HHHHHHHHHcCC
Q psy14502 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG----------YQLNTALILEGC 300 (352)
Q Consensus 231 ~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG----------~~l~~~fl~~gL 300 (352)
..++.+++.+.+......++..|++++..+- .|.+.+.+.|+ |+..+++.-+ -.++.+..++|
T Consensus 22 ~~~V~~l~R~~~~~~~~~l~~~g~~vv~~d~----~~~~~l~~al~--g~d~v~~~~~~~~~~~~~~~~~li~Aa~~ag- 94 (233)
T PF05368_consen 22 GFSVRALVRDPSSDRAQQLQALGAEVVEADY----DDPESLVAALK--GVDAVFSVTPPSHPSELEQQKNLIDAAKAAG- 94 (233)
T ss_dssp TGCEEEEESSSHHHHHHHHHHTTTEEEES-T----T-HHHHHHHHT--TCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-
T ss_pred CCCcEEEEeccchhhhhhhhcccceEeeccc----CCHHHHHHHHc--CCceEEeecCcchhhhhhhhhhHHHhhhccc-
Confidence 4456666666655566788889999886642 36677666666 6677777666 24777888889
Q ss_pred CcEEE
Q psy14502 301 VDELL 305 (352)
Q Consensus 301 vDEi~ 305 (352)
|..+.
T Consensus 95 Vk~~v 99 (233)
T PF05368_consen 95 VKHFV 99 (233)
T ss_dssp -SEEE
T ss_pred cceEE
Confidence 77663
No 85
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=30.38 E-value=1.6e+02 Score=29.13 Aligned_cols=165 Identities=13% Similarity=0.057 Sum_probs=79.5
Q ss_pred cEEEEEeeCCCCCCc-chHHHHhhhCCCeeeecchhhhhhhheeccccccccCcceEEEEeecCCCCccccCCCCccccC
Q psy14502 90 KKVIIAINDPNPLVS-GKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQWIT 168 (352)
Q Consensus 90 ~~vv~~~~~~~~~~~-~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~~~~rP~V~~~~a~SlDG~ia~~~g~~~~i~ 168 (352)
++|++|.+---.... -.-++.|++.|.+|.. ++.+.+.++..+.--....+.|-+. | ...... +
T Consensus 7 k~IllgvTGsiaa~k~~~lv~~L~~~g~~V~v-v~T~~A~~fi~~~~l~~l~~~~V~~-------~-~~~~~~------~ 71 (399)
T PRK05579 7 KRIVLGVSGGIAAYKALELVRRLRKAGADVRV-VMTEAAKKFVTPLTFQALSGNPVST-------D-LWDPAA------E 71 (399)
T ss_pred CeEEEEEeCHHHHHHHHHHHHHHHhCCCEEEE-EECHhHHHHHhHHHHHHhhCCceEc-------c-cccccc------C
Confidence 578877753211110 1235677888998876 6777777665544222222333211 1 000000 0
Q ss_pred CHhHHHHHHHHHhccceEEEccccccc---------cCCCcccCCCCCCCCCeEEEEcCCCCCCCCCccccCCceEEEEc
Q psy14502 169 SKESRNDSHIWRARSCAILTGIGTVLK---------DNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTA 239 (352)
Q Consensus 169 ~~~~~~~~~~lr~~~Dail~G~~T~~~---------d~p~l~~r~~~~~~~p~~vvv~~~~~~~~~~~~~~~~~~~v~t~ 239 (352)
+ ...+. ++..++|++++=--|... |++..+.-. ....|+.++..-+.....+ +
T Consensus 72 ~--~~~hi-~l~~~aD~~vVaPaTaNtlaKiA~GiaDnllt~~~l--a~~~pvvi~Pamn~~m~~~-p------------ 133 (399)
T PRK05579 72 A--AMGHI-ELAKWADLVLIAPATADLIAKLAHGIADDLLTTTLL--ATTAPVLVAPAMNTQMWEN-P------------ 133 (399)
T ss_pred C--Ccchh-hcccccCEEEEeeCCHHHHHHHHcccCCcHHHHHHH--hcCCCEEEEeCCChhHcCC-H------------
Confidence 0 01112 345589999997666432 222111100 0133443333222111110 0
Q ss_pred CCChhhHHHHHhCCcEEEEe-------cCC--CCCCCHHHHHHHHHh------CCCCEEEEeec
Q psy14502 240 TDLPMKRKILEDLGHEVIVL-------PNN--LGKVDLQAVIIELGK------RKINELHIEAG 288 (352)
Q Consensus 240 ~~~~~~~~~l~~~g~~v~~~-------~~~--~~~~dl~~~l~~L~~------~g~~~i~veGG 288 (352)
.....+..|++.|+.++.- ++. +...++.+++..+.+ ...+.++|-||
T Consensus 134 -~~~~Nl~~L~~~G~~ii~P~~g~la~~~~g~gr~~~~~~I~~~~~~~~~~~~l~gk~vlITgG 196 (399)
T PRK05579 134 -ATQRNLATLRSRGVEIIGPASGRLACGDVGPGRMAEPEEIVAAAERALSPKDLAGKRVLITAG 196 (399)
T ss_pred -HHHHHHHHHHHCCCEEECCCCccccCCCcCCCCCCCHHHHHHHHHHHhhhcccCCCEEEEeCC
Confidence 1234567888888887633 221 124578777766642 35689999998
No 86
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=30.27 E-value=87 Score=18.39 Aligned_cols=18 Identities=11% Similarity=0.372 Sum_probs=12.8
Q ss_pred EEEEEEeCCeEEEEeECC
Q psy14502 20 VGCVIVKEKRIISCGYTK 37 (352)
Q Consensus 20 vgaviv~~~~i~~~g~~~ 37 (352)
..++|.++|++.+.|.|.
T Consensus 10 ht~al~~~g~v~~wG~n~ 27 (30)
T PF13540_consen 10 HTCALTSDGEVYCWGDNN 27 (30)
T ss_dssp EEEEEE-TTEEEEEE--T
T ss_pred EEEEEEcCCCEEEEcCCc
Confidence 567777899999999885
No 87
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=29.71 E-value=1.6e+02 Score=26.77 Aligned_cols=66 Identities=9% Similarity=-0.063 Sum_probs=39.0
Q ss_pred CCceEEEEcCC---ChhhHHHHHhCCcEEEEecCCCCCC-CHHHHHHHHHhC-CCCEEEEeecHHHHHHHHHcCC
Q psy14502 231 GGGSCIFTATD---LPMKRKILEDLGHEVIVLPNNLGKV-DLQAVIIELGKR-KINELHIEAGYQLNTALILEGC 300 (352)
Q Consensus 231 ~~~~~v~t~~~---~~~~~~~l~~~g~~v~~~~~~~~~~-dl~~~l~~L~~~-g~~~i~veGG~~l~~~fl~~gL 300 (352)
+.+++++|.+. .......++..|+++- .+ .-+ .-..+.+.|+++ ..+++++.|...+...|-+.|+
T Consensus 33 g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~---~~-~iit~~~~~~~~l~~~~~~~~v~~lg~~~l~~~l~~~g~ 103 (249)
T TIGR01457 33 DIPYLFVTNNSTRTPESVAEMLASFDIPAT---LE-TVFTASMATADYMNDLKLEKTVYVIGEEGLKEAIKEAGY 103 (249)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHcCCCCC---hh-hEeeHHHHHHHHHHhcCCCCEEEEEcChhHHHHHHHcCC
Confidence 34455555432 2344566777776531 00 011 234455667665 4578999999999888887775
No 88
>PRK07313 phosphopantothenoylcysteine decarboxylase; Validated
Probab=29.65 E-value=1.5e+02 Score=25.81 Aligned_cols=45 Identities=22% Similarity=0.298 Sum_probs=27.8
Q ss_pred CcEEEEEeeCCCCCCc-chHHHHhhhCCCeeeecchhhhhhhheecc
Q psy14502 89 IKKVIIAINDPNPLVS-GKGVAQLISAGISVKQGLMQKEAYEINIGF 134 (352)
Q Consensus 89 i~~vv~~~~~~~~~~~-~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f 134 (352)
+++|++|.+---.... ..-++.|++.|.+|.. ++.+.++++....
T Consensus 1 ~k~Ill~vtGsiaa~~~~~li~~L~~~g~~V~v-v~T~~A~~fi~~~ 46 (182)
T PRK07313 1 MKNILLAVSGSIAAYKAADLTSQLTKRGYQVTV-LMTKAATKFITPL 46 (182)
T ss_pred CCEEEEEEeChHHHHHHHHHHHHHHHCCCEEEE-EEChhHHHHcCHH
Confidence 4678888753211111 1235778888999876 7777777766543
No 89
>COG1212 KdsB CMP-2-keto-3-deoxyoctulosonic acid synthetase [Cell envelope biogenesis, outer membrane]
Probab=29.44 E-value=84 Score=28.59 Aligned_cols=41 Identities=24% Similarity=0.330 Sum_probs=32.0
Q ss_pred CCCCcc---hHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 74 FGYTPP---CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 74 ~g~t~~---C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
.|.-|| ++....+||+.+||++..|++ -.+..++.|.+++.
T Consensus 25 I~GkpmI~rV~e~a~~s~~~rvvVATDde~------I~~av~~~G~~avm 68 (247)
T COG1212 25 IGGKPMIVRVAERALKSGADRVVVATDDER------IAEAVQAFGGEAVM 68 (247)
T ss_pred hCCchHHHHHHHHHHHcCCCeEEEEcCCHH------HHHHHHHhCCEEEe
Confidence 344456 788888999999999986664 46778888999875
No 90
>PRK08329 threonine synthase; Validated
Probab=29.32 E-value=1.1e+02 Score=29.50 Aligned_cols=66 Identities=17% Similarity=0.325 Sum_probs=32.5
Q ss_pred CCceEEEEcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC-C-------CCEEEEeecHHHHHHHHHc
Q psy14502 231 GGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-K-------INELHIEAGYQLNTALILE 298 (352)
Q Consensus 231 ~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~-g-------~~~i~veGG~~l~~~fl~~ 298 (352)
+.+..||..+. +..++..++..|.+++.++.+ ..+..+..+++.++ + .+...++|-.+++-+++++
T Consensus 127 G~~~~v~vp~~~~~~k~~~~~~~GA~v~~v~~~--~~~~~~~a~~l~~~~~~~~~~~~~np~~~eG~~t~~~Ei~eq 201 (347)
T PRK08329 127 GIKVHVFVSYNASKEKISLLSRLGAELHFVEGD--RMEVHEEAVKFSKRNNIPYVSHWLNPYFLEGTKTIAYEIYEQ 201 (347)
T ss_pred CCcEEEEECCCChHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCCeeccCCCCchhhccchhHHHHHHHH
Confidence 45555555543 344566666677776666421 11222233333322 2 2345566655666666544
No 91
>COG1979 Uncharacterized oxidoreductases, Fe-dependent alcohol dehydrogenase family [Energy production and conversion]
Probab=28.86 E-value=1.9e+02 Score=27.98 Aligned_cols=49 Identities=20% Similarity=0.163 Sum_probs=37.4
Q ss_pred CcEEEEecC--CCCCC-CHHHHHHHHHhCCCCEEEEeecHHHH--HHHHHcCCC
Q psy14502 253 GHEVIVLPN--NLGKV-DLQAVIIELGKRKINELHIEAGYQLN--TALILEGCV 301 (352)
Q Consensus 253 g~~v~~~~~--~~~~~-dl~~~l~~L~~~g~~~i~veGG~~l~--~~fl~~gLv 301 (352)
|++++.++. .+.+. .+..+++.++++++.-|+-.|||++. +-|+.++..
T Consensus 56 g~~~~E~~GVEPNP~~~Tv~kaV~i~kee~idflLAVGGGSViD~tK~IAa~a~ 109 (384)
T COG1979 56 GIEVIEFGGVEPNPRLETLMKAVEICKEENIDFLLAVGGGSVIDGTKFIAAAAK 109 (384)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHHcCceEEEEecCcchhhhHHHHHhhcc
Confidence 888888863 22333 47889999999999999999999987 456666543
No 92
>cd03412 CbiK_N Anaerobic cobalamin biosynthetic cobalt chelatase (CbiK), N-terminal domain. CbiK is part of the cobalt-early path for cobalamin biosynthesis. It catalyzes the insertion of cobalt into the oxidized form of precorrin-2, factor II (sirohydrochlorin), the second step of the anaerobic branch of vitamin B12 biosynthesis. CbiK belongs to the class II family of chelatases and is a homomeric enzyme that does not require ATP for its enzymatic activity.
Probab=28.82 E-value=1e+02 Score=24.92 Aligned_cols=21 Identities=10% Similarity=0.166 Sum_probs=18.4
Q ss_pred CCHHHHHHHHHhCCCCEEEEe
Q psy14502 266 VDLQAVIIELGKRKINELHIE 286 (352)
Q Consensus 266 ~dl~~~l~~L~~~g~~~i~ve 286 (352)
.++.++++.|.++|+++|+|.
T Consensus 56 p~~~eaL~~l~~~G~~~V~V~ 76 (127)
T cd03412 56 DTPEEALAKLAADGYTEVIVQ 76 (127)
T ss_pred CCHHHHHHHHHHCCCCEEEEE
Confidence 489999999999999998774
No 93
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=28.59 E-value=1.2e+02 Score=24.85 Aligned_cols=38 Identities=16% Similarity=0.181 Sum_probs=26.8
Q ss_pred HHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEee
Q psy14502 247 KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287 (352)
Q Consensus 247 ~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veG 287 (352)
..|+..|++|+.++. ..+.+++++...+.+..-|.+.+
T Consensus 24 ~~l~~~GfeVi~lg~---~~s~e~~v~aa~e~~adii~iSs 61 (132)
T TIGR00640 24 TAYADLGFDVDVGPL---FQTPEEIARQAVEADVHVVGVSS 61 (132)
T ss_pred HHHHhCCcEEEECCC---CCCHHHHHHHHHHcCCCEEEEcC
Confidence 567778888888764 36778888888877665555543
No 94
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=28.28 E-value=2.8e+02 Score=26.26 Aligned_cols=51 Identities=14% Similarity=0.024 Sum_probs=31.7
Q ss_pred CCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEee
Q psy14502 231 GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287 (352)
Q Consensus 231 ~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veG 287 (352)
+.+++.++...+.+..+.++..|+.++..- .+++++ ..+.+.|..-|.++|
T Consensus 87 ~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v-----~s~~~a-~~a~~~GaD~Ivv~g 137 (307)
T TIGR03151 87 KVPVVTTGAGNPGKYIPRLKENGVKVIPVV-----ASVALA-KRMEKAGADAVIAEG 137 (307)
T ss_pred CCCEEEEcCCCcHHHHHHHHHcCCEEEEEc-----CCHHHH-HHHHHcCCCEEEEEC
Confidence 444454443334456788888898876532 244443 566667888888865
No 95
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=28.27 E-value=89 Score=29.05 Aligned_cols=31 Identities=39% Similarity=0.481 Sum_probs=19.0
Q ss_pred CCceEEEEcCC-ChhhHHHHHhCCcEEEEecC
Q psy14502 231 GGGSCIFTATD-LPMKRKILEDLGHEVIVLPN 261 (352)
Q Consensus 231 ~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~ 261 (352)
+.+..||.... +..+...++..|.+++.++.
T Consensus 76 G~~~~i~vp~~~~~~k~~~~~~~Ga~v~~~~~ 107 (291)
T cd01561 76 GYRFIIVMPETMSEEKRKLLRALGAEVILTPE 107 (291)
T ss_pred CCeEEEEECCCCCHHHHHHHHHcCCEEEEeCC
Confidence 45555655543 45566667777777776654
No 96
>PRK07476 eutB threonine dehydratase; Provisional
Probab=27.85 E-value=1.3e+02 Score=28.60 Aligned_cols=94 Identities=16% Similarity=0.130 Sum_probs=46.9
Q ss_pred EEEcCCCCCCCCCcccc---CCceEEEEcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHh-CCC-------C
Q psy14502 214 IVIDSYLRIDPFFRVLK---GGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGK-RKI-------N 281 (352)
Q Consensus 214 vvv~~~~~~~~~~~~~~---~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~-~g~-------~ 281 (352)
||..++++.-....... +.+++||..+. ++.+...++..|.+++.++.. ..+..+..+++.+ .|. +
T Consensus 70 vv~aSsGN~g~alA~~a~~~G~~~~i~vp~~~~~~k~~~~~~~GA~V~~~~~~--~~~~~~~a~~~~~~~g~~~~~~~~n 147 (322)
T PRK07476 70 VVTASTGNHGRALAYAARALGIRATICMSRLVPANKVDAIRALGAEVRIVGRS--QDDAQAEVERLVREEGLTMVPPFDD 147 (322)
T ss_pred EEEECCChHHHHHHHHHHHhCCCEEEEeCCCCCHHHHHHHHHcCCEEEEECCC--HHHHHHHHHHHHHhcCCEEeCCCCC
Confidence 45555555332222222 56667766654 556677778888888777631 1122223333332 232 2
Q ss_pred EEEEeecHHHHHHHHHcCCCcEEEEEEece
Q psy14502 282 ELHIEAGYQLNTALILEGCVDELLLYISPI 311 (352)
Q Consensus 282 ~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ 311 (352)
...++|=+++..+++++- .++--.+.|+
T Consensus 148 ~~~~~g~~t~~~Ei~~Q~--~~~d~iv~~v 175 (322)
T PRK07476 148 PRIIAGQGTIGLEILEAL--PDVATVLVPL 175 (322)
T ss_pred cceeechhHHHHHHHHhC--cCCCEEEEEc
Confidence 334445456666666651 2232345565
No 97
>cd00248 Mth938-like Mth938-like domain. The members of this family include: Mth938, 2P1, Xcr35, Rpa2829, and several uncharacterized sequences. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. 2P1 is a partially characterized nuclear protein which is homologous to E3-3 from rat and known to be alternately spliced. Xcr35 and Rpa2829 are hypothetical proteins of unknown function from the Xanthomonas campestris and Rhodopseudomonas palustris genomes, respectively, for which the crystal structures have been determined.
Probab=26.97 E-value=1.4e+02 Score=23.60 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=34.5
Q ss_pred chHHHHHHhC-CcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhh
Q psy14502 79 PCTEALIKSG-IKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEI 130 (352)
Q Consensus 79 ~C~~~i~~~g-i~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l 130 (352)
.-...+.... +.-|++|.-.......-.-.+.|+++||.|+..--.+.|+.+
T Consensus 42 ~~l~~~~~~~~peiliiGTG~~~~~~~~~~~~~l~~~gI~vE~m~T~aAcrTy 94 (109)
T cd00248 42 EALLPLLAEDRPDILLIGTGAEIAFLPRALRAALRAAGIGVEVMSTGAACRTY 94 (109)
T ss_pred HHHHHHHhhCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCeEEEeCcHHHHHHH
Confidence 4445555555 777888876555444455678999999999874445566543
No 98
>PRK06450 threonine synthase; Validated
Probab=26.66 E-value=1.6e+02 Score=28.34 Aligned_cols=29 Identities=31% Similarity=0.305 Sum_probs=13.0
Q ss_pred CCceEEEEcCC-ChhhHHHHHhCCcEEEEe
Q psy14502 231 GGGSCIFTATD-LPMKRKILEDLGHEVIVL 259 (352)
Q Consensus 231 ~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~ 259 (352)
+.+.+||..+. +..++..++..|.+++.+
T Consensus 120 G~~~~i~vP~~~~~~k~~~i~~~GA~vi~v 149 (338)
T PRK06450 120 GIEVKIFVPETASGGKLKQIESYGAEVVRV 149 (338)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcCCEEEEE
Confidence 34444444332 334444455555555444
No 99
>TIGR00355 purH phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase. Involved in purine ribonucleotide biosynthesis. The IMP cyclohydrolase activity is in the N-terminal region.
Probab=26.41 E-value=2e+02 Score=29.35 Aligned_cols=103 Identities=17% Similarity=0.107 Sum_probs=71.2
Q ss_pred HHHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEe-CCCCCCCCCCcchH
Q psy14502 4 ALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT-LEPCSYFGYTPPCT 81 (352)
Q Consensus 4 a~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t-~ePC~~~g~t~~C~ 81 (352)
.+..|++. ..... -+-|+++||+.|+.|.-+.. ..++-..|+.++.+.+..++|+.|=.- ..|= +.|.
T Consensus 398 dL~FAwkv~k~vKS---NAIv~akd~~tvGiGaGQ~s-RV~s~riA~~kA~~~~~~~~G~vlASDAFFPF------~D~v 467 (511)
T TIGR00355 398 DLLFAWKVAKHVKS---NAIVYAKNNMTVGVGAGQMS-RVGSAKIAGIKADDEGLEAKGSSLASDAFFPF------RDGV 467 (511)
T ss_pred HHHHHHHHHhhccC---ceEEEEeCCeEEEecCCCcc-HHHHHHHHHHHHHhhCCCccCcEEEeccccCC------CccH
Confidence 35556665 33333 34566779999999875543 456667789999766778889888664 4577 4899
Q ss_pred HHHHHhCCcEEEEEeeCCCCCC-cchHHHHhhhCCCeeee
Q psy14502 82 EALIKSGIKKVIIAINDPNPLV-SGKGVAQLISAGISVKQ 120 (352)
Q Consensus 82 ~~i~~~gi~~vv~~~~~~~~~~-~~~~~~~l~~~gi~v~~ 120 (352)
.....+||+.||- |-... ....++.-.++||..+.
T Consensus 468 e~aa~aGi~aIiQ----PGGSiRD~evI~aa~e~giaMvf 503 (511)
T TIGR00355 468 EEAAAAGITCIIQ----PGGSMRDEDSIWAADEHGIVMVF 503 (511)
T ss_pred HHHHHcCCEEEEc----CCCCCCcHHHHHHHHHhCCEEEE
Confidence 9999999998885 22222 23467788888987653
No 100
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=26.40 E-value=1.4e+02 Score=24.58 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=23.8
Q ss_pred HHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEE
Q psy14502 247 KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHI 285 (352)
Q Consensus 247 ~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~v 285 (352)
..++..|++++.++. .+.++++++...+.+..-|.+
T Consensus 25 ~~lr~~G~eVi~LG~---~vp~e~i~~~a~~~~~d~V~l 60 (137)
T PRK02261 25 RALTEAGFEVINLGV---MTSQEEFIDAAIETDADAILV 60 (137)
T ss_pred HHHHHCCCEEEECCC---CCCHHHHHHHHHHcCCCEEEE
Confidence 456677777777765 366777777777666555544
No 101
>COG0424 Maf Nucleotide-binding protein implicated in inhibition of septum formation [Cell division and chromosome partitioning]
Probab=26.39 E-value=1.5e+02 Score=26.28 Aligned_cols=49 Identities=14% Similarity=0.154 Sum_probs=33.9
Q ss_pred cCcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccc
Q psy14502 140 RGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTV 193 (352)
Q Consensus 140 ~~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~ 193 (352)
.+-+-|..-..+++||+|-++.. +-.++.+++..++.+.--++.|---+
T Consensus 63 ~~~~VigaDtvv~ldgrilgKP~-----~~~eA~~~L~~lSG~~h~v~T~v~li 111 (193)
T COG0424 63 PDALVIGADTVVVLDGRILGKPK-----DEEEAREMLRKLSGRTHQVYTGVALI 111 (193)
T ss_pred CCCEEEecCeEEEECCEEecCCC-----CHHHHHHHHHHhcCCeEEEEEEEEEE
Confidence 45677888999999999965432 34567777788877766665555433
No 102
>PF09587 PGA_cap: Bacterial capsule synthesis protein PGA_cap; InterPro: IPR019079 CapA is a putative poly-gamma-glutamate capsule biosynthesis protein found in bacteria. Poly-gamma-glutamate is a natural polymer that may be involved in virulence and may help bacteria survive in high salt concentrations. It is a surface-associated protein [].
Probab=26.22 E-value=4.9e+02 Score=23.46 Aligned_cols=108 Identities=18% Similarity=0.107 Sum_probs=57.4
Q ss_pred CcchHHHHHHhCCcEEEEEeeCCCCCC-c--chHHHHhhhCCCeeee-cchhhhhhhheeccccccccCcceEEEEeecC
Q psy14502 77 TPPCTEALIKSGIKKVIIAINDPNPLV-S--GKGVAQLISAGISVKQ-GLMQKEAYEINIGFFSRMQRGIPWVRMKIASS 152 (352)
Q Consensus 77 t~~C~~~i~~~gi~~vv~~~~~~~~~~-~--~~~~~~l~~~gi~v~~-~~~~~~~~~l~~~f~~~~~~~rP~V~~~~a~S 152 (352)
.|.-..++.++|+.-|-.+..+-.+.- . ..-++.|+++||.... +.-.+++.+ +......+...-++.+...
T Consensus 64 ~~~~~~~L~~~G~d~vslANNH~~D~G~~gl~~Tl~~L~~~gi~~~Gag~~~~~a~~----p~i~~~~g~kia~l~~t~~ 139 (250)
T PF09587_consen 64 PPEILDALKDAGFDVVSLANNHIFDYGEEGLLDTLEALDKAGIPYVGAGRNLEEARR----PAIIEVNGVKIAFLGYTDG 139 (250)
T ss_pred CHHHHHHHHHcCCCEEEecCCCCccccHHHHHHHHHHHHHCCCcEeECcCChHHhcC----eEEEEECCEEEEEEEEEcC
Confidence 345679999999997777643332210 0 1236788899999877 222233321 1222234444444444444
Q ss_pred CCCccccCCCC-ccccC-------------CHhHHHHHHHHHhccceEEE
Q psy14502 153 LDNKTSLYNNS-SQWIT-------------SKESRNDSHIWRARSCAILT 188 (352)
Q Consensus 153 lDG~ia~~~g~-~~~i~-------------~~~~~~~~~~lr~~~Dail~ 188 (352)
..+.-...... ..|.. -+.-.+...++|..+|.+|+
T Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~~r~~~D~vIv 189 (250)
T PF09587_consen 140 ENGYSSANGNRPYGFSYRPDKAGLNPNRPGIERIKEDIREARKKADVVIV 189 (250)
T ss_pred CCCCccccccccccccccccccccccccchHHHHHHHHHHHhcCCCEEEE
Confidence 44443322211 11110 03445667778877888887
No 103
>PF04430 DUF498: Protein of unknown function (DUF498/DUF598); InterPro: IPR007523 NADH:ubiquinone oxidoreductase (complex I) (1.6.5.3 from EC) is a respiratory-chain enzyme that catalyses the transfer of two electrons from NADH to ubiquinone in a reaction that is associated with proton translocation across the membrane (NADH + ubiquinone = NAD+ + ubiquinol) []. Complex I is a major source of reactive oxygen species (ROS) that are predominantly formed by electron transfer from FMNH(2). Complex I is found in bacteria, cyanobacteria (as a NADH-plastoquinone oxidoreductase), archaea [], mitochondira, and in the hydrogenosome, a mitochondria-derived organelle. In general, the bacterial complex consists of 14 different subunits, while the mitochondrial complex contains homologues to these subunits in addition to approximately 31 additional proteins []. Mitochondrial complex I, which is located in the inner mitochondrial membrane, is the largest multimeric respiratory enzyme in the mitochondria, consisting of more than 40 subunits, one FMN co-factor and eight FeS clusters []. The assembly of mitochondrial complex I is an intricate process that requires the cooperation of the nuclear and mitochondrial genomes [, ]. Mitochondrial complex I can cycle between active and deactive forms that can be distinguished by the reactivity towards divalent cations and thiol-reactive agents. All redox prosthetic groups reside in the peripheral arm of the L-shaped structure. The NADH oxidation domain harbouring the FMN cofactor is connected via a chain of iron-sulphur clusters to the ubiquinone reduction site that is located in a large pocket formed by the PSST and 49kDa subunits of complex I []. This is entry represents an essential factor for the assembly of mitochondrial NADH:ubiquinone oxidoreductase complex (complex I) []. The crystal structure of this protein revealed a 3-layer beta+alpha/beta/alpha topology [].; PDB: 2K2E_A 2Q4Q_B 2AB1_A 2FVT_A 2CYJ_A 1IHN_B 2GM2_A 3CPK_A 2FI9_A.
Probab=25.40 E-value=1e+02 Score=24.25 Aligned_cols=52 Identities=15% Similarity=0.058 Sum_probs=33.4
Q ss_pred chHHHHHHh--CCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhh
Q psy14502 79 PCTEALIKS--GIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEI 130 (352)
Q Consensus 79 ~C~~~i~~~--gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l 130 (352)
.-...+... ++.-+++|.-.........-.+.|+++||.|+..--.+.|+.+
T Consensus 42 ~~l~~l~~~~p~pe~liiGtG~~~~~~~~~~~~~l~~~GI~ve~m~T~~Ac~ty 95 (110)
T PF04430_consen 42 EDLEELLELEPKPEVLIIGTGKRQLFLPPELREYLRKKGIGVEVMDTPAACRTY 95 (110)
T ss_dssp HHHHHHHCTCCS-SEEEEEETTS-SECTHHHHHHHHTTT-EEEEE-HHHHHHHH
T ss_pred HHHHHHHhccCCCcEEEEccCCccccCCHHHHHHHHHcCCeEEEECHHHHHHHH
Confidence 445556666 7788999986654444556789999999999874445566543
No 104
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=25.38 E-value=65 Score=29.39 Aligned_cols=40 Identities=10% Similarity=0.171 Sum_probs=31.0
Q ss_pred hHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 80 C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
...++...|++||-+..+++... ...-.++|.++||+|..
T Consensus 111 ~~~AL~alg~~RIalvTPY~~~v-~~~~~~~l~~~G~eV~~ 150 (239)
T TIGR02990 111 AVDGLAALGVRRISLLTPYTPET-SRPMAQYFAVRGFEIVN 150 (239)
T ss_pred HHHHHHHcCCCEEEEECCCcHHH-HHHHHHHHHhCCcEEee
Confidence 45666677999999998877642 34567899999999975
No 105
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=25.13 E-value=2.1e+02 Score=21.43 Aligned_cols=37 Identities=22% Similarity=0.203 Sum_probs=27.7
Q ss_pred cchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 78 PPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 78 ~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
..-...+...++.-|+.+.-.+ +....|+++||+|..
T Consensus 51 ~~~~~~l~~~~v~~vi~~~iG~------~a~~~l~~~gI~v~~ 87 (102)
T cd00562 51 KLAARLLALEGCDAVLVGGIGG------PAAAKLEAAGIKPIK 87 (102)
T ss_pred hHHHHHHHHCCCcEEEEcccCc------cHHHHHHHcCCEEEE
Confidence 3566778888999888875433 367889999999876
No 106
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=24.94 E-value=88 Score=27.88 Aligned_cols=35 Identities=14% Similarity=0.177 Sum_probs=28.8
Q ss_pred CCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCC
Q psy14502 266 VDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300 (352)
Q Consensus 266 ~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gL 300 (352)
....+.++.|++.|.+-++|.||++....-+.+.|
T Consensus 80 ~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~l 114 (212)
T COG0560 80 PGAEELVAALKAAGAKVVIISGGFTFLVEPIAERL 114 (212)
T ss_pred ccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHh
Confidence 37899999999999999999999996655555433
No 107
>PF11927 DUF3445: Protein of unknown function (DUF3445); InterPro: IPR021848 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 264 to 418 amino acids in length. This protein has a conserved RLP sequence motif. This protein has two completely conserved R residues that may be functionally important.
Probab=24.66 E-value=38 Score=31.14 Aligned_cols=71 Identities=23% Similarity=0.252 Sum_probs=47.9
Q ss_pred hhhhhhhheeccccccccCcceEEEEeecCCCCccccCCCCcc-cc-------CCHhH---------HHHHHHHHhccce
Q psy14502 123 MQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSLYNNSSQ-WI-------TSKES---------RNDSHIWRARSCA 185 (352)
Q Consensus 123 ~~~~~~~l~~~f~~~~~~~rP~V~~~~a~SlDG~ia~~~g~~~-~i-------~~~~~---------~~~~~~lr~~~Da 185 (352)
+++....-...||.+++.++|+.+.++.++.|...-.+.+... |- +.+.+ ++-+..| -.+.|
T Consensus 154 y~~~l~~sm~rff~rl~~~~pv~R~NW~i~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ErQtL~RL-P~S~a 232 (249)
T PF11927_consen 154 YKEKLAKSMNRFFDRLQPGKPVWRFNWSIQTDPELFQPPGNHPEWGPEKAATRDEDNDGEDLFLRVERQTLRRL-PKSGA 232 (249)
T ss_pred hhHHHHHHHHHHHHhCCCCCCeEEEEeEEeccccccCCCCcccccccccccccCcccCccceEEEEeeeeeeec-CCCCe
Confidence 5566677788999999999999999999999987766553221 11 01100 1222333 45788
Q ss_pred EEEcccccc
Q psy14502 186 ILTGIGTVL 194 (352)
Q Consensus 186 il~G~~T~~ 194 (352)
||++-+||.
T Consensus 233 ivFtIrty~ 241 (249)
T PF11927_consen 233 IVFTIRTYL 241 (249)
T ss_pred EEEEEEeee
Confidence 888888865
No 108
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=24.27 E-value=2e+02 Score=27.93 Aligned_cols=47 Identities=15% Similarity=0.013 Sum_probs=32.9
Q ss_pred HHHHHhCCcEEEEecC--CCCCC-CHHHHHHHHHhCCCCEEEEeecHHHH
Q psy14502 246 RKILEDLGHEVIVLPN--NLGKV-DLQAVIIELGKRKINELHIEAGYQLN 292 (352)
Q Consensus 246 ~~~l~~~g~~v~~~~~--~~~~~-dl~~~l~~L~~~g~~~i~veGG~~l~ 292 (352)
.+.|++.|+++..+.. .+... .+.++++.+++.++.-|+-.|||+..
T Consensus 45 ~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSvi 94 (375)
T cd08179 45 EAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAMREFEPDWIIALGGGSPI 94 (375)
T ss_pred HHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCccHH
Confidence 4556777888776643 11222 37777888888899899999999854
No 109
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form. A form of threonine dehydratase with two copies of the C-terminal domain Pfam:PF00585 is described by TIGR01124. This model describes a phylogenetically distinct form with a single copy of pfam00585. This form branches with the catabolic threonine dehydratase of E. coli; many members are designated as catabolic for this reason. However, the catabolic form lacks any pfam00585 domain. Many members of this model are found in species with other Ile biosynthetic enzymes.
Probab=24.19 E-value=1.1e+02 Score=29.79 Aligned_cols=94 Identities=18% Similarity=0.200 Sum_probs=51.3
Q ss_pred EEEcCCCCCCCCCcccc---CCceEEEEcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHH---HHHhC-C------
Q psy14502 214 IVIDSYLRIDPFFRVLK---GGGSCIFTATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVII---ELGKR-K------ 279 (352)
Q Consensus 214 vvv~~~~~~~~~~~~~~---~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~---~L~~~-g------ 279 (352)
||..++|+......... +.+..|+.... +..+...++..|.+++..+. +..++.+ ++.+. |
T Consensus 51 vv~aSsGN~g~alA~~a~~~G~~~~iv~p~~~~~~k~~~~~~~GA~V~~~~~-----~~~~a~~~a~~~~~~~~~~~~~~ 125 (380)
T TIGR01127 51 VVAASAGNHAQGVAYAAKKFGIKAVIVMPESAPPSKVKATKSYGAEVILHGD-----DYDEAYAFATSLAEEEGRVFVHP 125 (380)
T ss_pred EEEECCCHHHHHHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHCCCEEEEECC-----CHHHHHHHHHHHHHhcCCEecCC
Confidence 56666665432222222 56666666654 55677888888988887753 3333333 33332 2
Q ss_pred C-CEEEEeecHHHHHHHHHcCCCcEEEEEEeceeecCC
Q psy14502 280 I-NELHIEAGYQLNTALILEGCVDELLLYISPILIGEA 316 (352)
Q Consensus 280 ~-~~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~g 316 (352)
+ +...++|-+++..+++++- .++...+.|+ |+|
T Consensus 126 ~~~~~~~~g~~t~~~Ei~~q~--~~~D~vv~~v--G~G 159 (380)
T TIGR01127 126 FDDEFVMAGQGTIGLEIMEDI--PDVDTVIVPV--GGG 159 (380)
T ss_pred CCChhhhhhhHHHHHHHHHhC--CCCCEEEEEe--ChH
Confidence 1 2234456567777777651 2233456676 544
No 110
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=24.03 E-value=2.7e+02 Score=26.80 Aligned_cols=48 Identities=17% Similarity=0.048 Sum_probs=33.3
Q ss_pred HHHHHhCCcEEEEecC--CCCC-CCHHHHHHHHHhCCCCEEEEeecHHHHH
Q psy14502 246 RKILEDLGHEVIVLPN--NLGK-VDLQAVIIELGKRKINELHIEAGYQLNT 293 (352)
Q Consensus 246 ~~~l~~~g~~v~~~~~--~~~~-~dl~~~l~~L~~~g~~~i~veGG~~l~~ 293 (352)
...|+..|+++..+.. .+.. -++.++.+.+++.+..-|+-.|||+...
T Consensus 47 ~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGSviD 97 (357)
T cd08181 47 TKALEELGIEYEIFDEVEENPSLETIMEAVEIAKKFNADFVIGIGGGSPLD 97 (357)
T ss_pred HHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHHHhcCCCEEEEeCCchHHH
Confidence 3556778888776542 1112 2467777788888999999999998653
No 111
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=23.83 E-value=3.1e+02 Score=20.40 Aligned_cols=39 Identities=15% Similarity=0.145 Sum_probs=28.3
Q ss_pred CCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHH
Q psy14502 252 LGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294 (352)
Q Consensus 252 ~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~ 294 (352)
.+..++.++ + .++ .+....|++.+.+++++.||.....+
T Consensus 49 ~~~PIll~~-~--~l~-~~~~~~l~~~~~~~v~iiGg~~~is~ 87 (92)
T PF04122_consen 49 NNAPILLVN-N--SLP-SSVKAFLKSLNIKKVYIIGGEGAISD 87 (92)
T ss_pred cCCeEEEEC-C--CCC-HHHHHHHHHcCCCEEEEECCCCccCH
Confidence 456666665 2 455 78888888889999999998665443
No 112
>PLN02565 cysteine synthase
Probab=23.60 E-value=2.3e+02 Score=27.00 Aligned_cols=49 Identities=14% Similarity=0.080 Sum_probs=27.8
Q ss_pred EEEEcCCCCCCCCCcccc---CCceEEEEcCC-ChhhHHHHHhCCcEEEEecC
Q psy14502 213 RIVIDSYLRIDPFFRVLK---GGGSCIFTATD-LPMKRKILEDLGHEVIVLPN 261 (352)
Q Consensus 213 ~vvv~~~~~~~~~~~~~~---~~~~~v~t~~~-~~~~~~~l~~~g~~v~~~~~ 261 (352)
.||..++|+.-....... +.+..||..+. ++.++..++..|.+++.++.
T Consensus 69 ~vv~aSsGN~g~alA~~a~~~G~~~~ivvp~~~~~~k~~~i~~~GA~V~~~~~ 121 (322)
T PLN02565 69 VLIEPTSGNTGIGLAFMAAAKGYKLIITMPASMSLERRIILLAFGAELVLTDP 121 (322)
T ss_pred EEEEECCChHHHHHHHHHHHcCCeEEEEeCCCCcHHHHHHHHHcCCEEEEeCC
Confidence 355556665432222221 55666666554 55667777777777776653
No 113
>cd06386 PBP1_NPR_C_like Ligand-binding domain of type C natriuretic peptide receptor. Ligand-binding domain of type C natriuretic peptide receptor (NPR-C). NPR-C is found in atrial, mesentery, placenta, lung, kidney, venous tissue, aortic smooth muscle, and aortic endothelial cells. The affinity of NPR-C for natriuretic peptides is ANPCNPBNP. The extracellular domain of NPR-C is about 30% identical to NPR-A and NPR-B. However, unlike the cyclase-linked receptors, it contains only 37 intracellular amino acids and no guanylyl cyclase activity. Major function of NPR-C is to clear natriuretic peptides from the circulation or extracellular surroundings through constitutive receptor-mediated internalization and degradation.
Probab=23.38 E-value=4e+02 Score=25.65 Aligned_cols=66 Identities=15% Similarity=0.299 Sum_probs=43.6
Q ss_pred HHHHhCCcEEEEecC-CCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHH----cCCCcEEEEEEeceee
Q psy14502 247 KILEDLGHEVIVLPN-NLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL----EGCVDELLLYISPILI 313 (352)
Q Consensus 247 ~~l~~~g~~v~~~~~-~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~----~gLvDEi~l~i~P~il 313 (352)
..++..|+++..... +.+..|..+.++++++.+ +-|++.+....+..|++ .|+-.+=+++|.|-+.
T Consensus 162 ~~~~~~gi~v~~~~~~~~~~~d~~~~l~~ik~~~-rvii~~~~~~~~~~ll~~A~~~gm~~~~yv~i~~d~~ 232 (387)
T cd06386 162 HVFQEEGYHMSIYPFDETKDLDLDEIIRAIQASE-RVVIMCAGADTIRSIMLAAHRRGLTSGDYIFFNIELF 232 (387)
T ss_pred HHHHhcCceEEEEecCCCCcccHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHHHHcCCCCCCEEEEEEecc
Confidence 455667776654322 122458999999999988 77777767776666655 7887655566666443
No 114
>PF08973 TM1506: Domain of unknown function (DUF1893); InterPro: IPR015067 This family consist of hypothetical bacterial proteins. ; PDB: 1VK9_A.
Probab=23.08 E-value=1.3e+02 Score=24.86 Aligned_cols=93 Identities=20% Similarity=0.214 Sum_probs=51.0
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcch
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPC 80 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~C 80 (352)
|+.++++-... ...|||.++++|-..--.. ...=...+.+- ...++|+.++-..= ||. -
T Consensus 1 m~~~~~~L~e~-------~~S~Vv~~~~~i~t~~~rG----v~pL~~ll~~~---~~~l~ga~vaDKvv-----GKA--A 59 (134)
T PF08973_consen 1 MEEAIKLLHEE-------NYSCVVLKDGEIRTSDGRG----VKPLYDLLNEE---PEFLKGAVVADKVV-----GKA--A 59 (134)
T ss_dssp --HHHHHHHHT-------T-SEEEESSSEEEEE--ST----THHHHHHHHH----S---TT-EEEEEEE------HH--H
T ss_pred CHHHHHHHHhC-------CceEEEEeCCEEEEeCCCC----hHHHHHHHHhC---hhhhhcccHHHHHH-----hHH--H
Confidence 56666665552 1568999999854332222 23323334433 55689999987652 322 5
Q ss_pred HHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 81 TEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 81 ~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
+.+++..||++|+-..- +..+.++|+++||+|..
T Consensus 60 A~lmv~ggv~~vyA~vi------S~~Al~~L~~~gI~v~y 93 (134)
T PF08973_consen 60 AALMVLGGVKEVYADVI------SEPALDLLEEAGIKVSY 93 (134)
T ss_dssp HHHHHHH--SEEEEEEE------EHHHHHHHHHTT--EEE
T ss_pred HHHHHHhcHHHHHHHHH------hHHHHHHHHHcCCceeH
Confidence 77788889999987653 34589999999999875
No 115
>cd08551 Fe-ADH iron-containing alcohol dehydrogenases (Fe-ADH)-like. Large metal-containing alcohol dehydrogenases (ADH), known as iron-containing alcohol dehydrogenases. They contain a dehydroquinate synthase-like protein structural fold and mostly contain iron. They are distinct from other alcohol dehydrogenases which contains different protein domains. There are several distinct families of alcohol dehydrogenases: Zinc-containing long-chain alcohol dehydrogenases; insect-type, or short-chain alcohol dehydrogenases; iron-containing alcohol dehydrogenases, and others. The iron-containing family has a Rossmann fold-like topology that resembles the fold of the zinc-dependent alcohol dehydrogenases, but lacks sequence homology, and differs in strand arrangement. ADH catalyzes the reversible oxidation of alcohol to acetaldehyde with the simultaneous reduction of NAD(P)+ to NAD(P)H.
Probab=22.53 E-value=2.7e+02 Score=26.85 Aligned_cols=71 Identities=17% Similarity=0.174 Sum_probs=43.9
Q ss_pred HHHHHhCCcEEEEecCC--C-CCCCHHHHHHHHHhCCCCEEEEeecHHHHH------HHHHcC--CCc----------EE
Q psy14502 246 RKILEDLGHEVIVLPNN--L-GKVDLQAVIIELGKRKINELHIEAGYQLNT------ALILEG--CVD----------EL 304 (352)
Q Consensus 246 ~~~l~~~g~~v~~~~~~--~-~~~dl~~~l~~L~~~g~~~i~veGG~~l~~------~fl~~g--LvD----------Ei 304 (352)
...+++.|+++..+..- + ..-++.++++.+++.+..-|+-.|||+... .++... ..| .+
T Consensus 44 ~~~L~~~~~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IiaiGGGs~~D~AK~va~~~~~~~~~~~~~~~~~~~~~~~ 123 (370)
T cd08551 44 IDSLKEAGIEVVIFDGVEPNPTLSNVDAAVAAYREEGCDGVIAVGGGSVLDTAKAIALLATNPGDIWDYEGGKPVIKPAL 123 (370)
T ss_pred HHHHHHcCCeEEEECCCCCCCCHHHHHHHHHHHHhcCCCEEEEeCCchHHHHHHHHHHHHhCCCcHHHHhCcccccCCCC
Confidence 35666778877765421 1 123477788888888888888899988542 222110 011 34
Q ss_pred EEEEeceeecCC
Q psy14502 305 LLYISPILIGEA 316 (352)
Q Consensus 305 ~l~i~P~ilG~g 316 (352)
-+...|...|.|
T Consensus 124 p~i~VPTt~gtg 135 (370)
T cd08551 124 PLIAIPTTAGTG 135 (370)
T ss_pred CEEEecCCCcch
Confidence 577778888877
No 116
>cd05126 Mth938 Mth938 domain. Mth938 is a hypothetical protein encoded by the Methanobacterium thermoautotrophicum (Mth) genome. This protein crystallizes as a dimer, although it is monomeric in solution, with one disulfide bond in each monomer. The function of the protein has not been determined.
Probab=22.15 E-value=1.9e+02 Score=23.28 Aligned_cols=54 Identities=20% Similarity=0.304 Sum_probs=37.7
Q ss_pred cchHHHHHHhCCcEEEEEeeCCCC-CCcchHHHHhhhCCCeeeecchhhhhhhhe
Q psy14502 78 PPCTEALIKSGIKKVIIAINDPNP-LVSGKGVAQLISAGISVKQGLMQKEAYEIN 131 (352)
Q Consensus 78 ~~C~~~i~~~gi~~vv~~~~~~~~-~~~~~~~~~l~~~gi~v~~~~~~~~~~~l~ 131 (352)
+.-...++..++.-|++|.-.... .....-.+.|+++||+|+..--...|+.+|
T Consensus 48 ~~~l~~ll~~~peivliGTG~~~~~~~~~~~~~~l~~~Gi~ve~m~T~aAcrTYN 102 (117)
T cd05126 48 PEELEELLEEGVEVIVIGTGQSGALKVPPETVEKLEKRGVEVLVLPTEEAVKRYN 102 (117)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCccccCCHHHHHHHHhcCCEEEEcChHHHHHHHH
Confidence 567788888888888888755533 234455689999999998744456665433
No 117
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=21.94 E-value=2.7e+02 Score=27.01 Aligned_cols=47 Identities=13% Similarity=0.012 Sum_probs=31.6
Q ss_pred HHHHHhCCcEEEEecC--CCCC-CCHHHHHHHHHhCCCCEEEEeecHHHH
Q psy14502 246 RKILEDLGHEVIVLPN--NLGK-VDLQAVIIELGKRKINELHIEAGYQLN 292 (352)
Q Consensus 246 ~~~l~~~g~~v~~~~~--~~~~-~dl~~~l~~L~~~g~~~i~veGG~~l~ 292 (352)
.+.|++.|+++..+.. .+.. -++.++++.+++.+..-|+-.|||+..
T Consensus 47 ~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~~~~~~D~IiavGGGS~i 96 (380)
T cd08185 47 IELLKQAGVEVVVFDKVEPNPTTTTVMEGAALAREEGCDFVVGLGGGSSM 96 (380)
T ss_pred HHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHH
Confidence 3566778888766542 1112 246677778888888888878998854
No 118
>cd06373 PBP1_NPR_like Ligand binding domain of natriuretic peptide receptor (NPR) family. Ligand binding domain of natriuretic peptide receptor (NPR) family which consists of three different subtypes: type A natriuretic peptide receptor (NPR-A, or GC-A), type B natriuretic peptide receptors (NPR-B, or GC-B), and type C natriuretic peptide receptor (NPR-C). There are three types of natriuretic peptide (NP) ligands specific to the receptors: atrial NP (ANP), brain or B-type NP (BNP), and C-type NP (CNP). The NP family is thought to have arisen through gene duplication during evolution and plays an essential role in cardiovascular and body fluid homeostasis. ANP and BNP bind mainly to NPR-A, while CNP binds specifically to NPR-B. Both NPR-A and NPR-B have guanylyl cyclase catalytic activity and produces intracellular secondary messenger cGMP in response to peptide-ligand binding. Consequently, the NPR-A activation results in vasodilation and inhibition of vascular smooth muscle cell proli
Probab=21.79 E-value=3.7e+02 Score=25.79 Aligned_cols=66 Identities=14% Similarity=0.183 Sum_probs=36.9
Q ss_pred HHHhCCcEEEEecCCCC--CCCHHHHHHHHHhCCCCEEEEeecHHHHHHHH----HcCCCcEEEEEEeceeec
Q psy14502 248 ILEDLGHEVIVLPNNLG--KVDLQAVIIELGKRKINELHIEAGYQLNTALI----LEGCVDELLLYISPILIG 314 (352)
Q Consensus 248 ~l~~~g~~v~~~~~~~~--~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl----~~gLvDEi~l~i~P~ilG 314 (352)
.+++.|+++....-..+ ..|....++++++.+ .-|++.+-+.....|+ +.|+-..-+++|.|-+++
T Consensus 169 ~~~~~g~~v~~~~~~~~~~~~d~~~~l~~ik~~~-~vii~~~~~~~~~~~~~qa~~~g~~~~~yv~i~~~~~~ 240 (396)
T cd06373 169 VLKEENITVSDFPFDEDKELDDYKELLRDISKKG-RVVIMCASPDTVREIMLAAHRLGLTSGEYVFFNIDLFG 240 (396)
T ss_pred HHhhcCceeeEEeecCCccccCHHHHHHHHHhcC-cEEEEecCHHHHHHHHHHHHHcCCCCCcEEEEEEccch
Confidence 44455655432221111 368999999999876 5555555555455454 458864444444444443
No 119
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=21.65 E-value=2.3e+02 Score=21.30 Aligned_cols=35 Identities=14% Similarity=0.076 Sum_probs=16.9
Q ss_pred EEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHH
Q psy14502 236 IFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIE 274 (352)
Q Consensus 236 v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~ 274 (352)
|++..-.+.....|++.|++++.... .+++++++.
T Consensus 67 vi~~~iG~~~~~~l~~~gI~v~~~~~----~~i~~vl~~ 101 (103)
T cd00851 67 VIVGGIGPRALNKLRNAGIKVYKGAE----GTVEEAIEA 101 (103)
T ss_pred EEeCCCCcCHHHHHHHCCCEEEEcCC----CCHHHHHHh
Confidence 33333333444555566666554431 355555543
No 120
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=21.46 E-value=1.6e+02 Score=22.22 Aligned_cols=37 Identities=30% Similarity=0.430 Sum_probs=26.9
Q ss_pred chHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeec
Q psy14502 79 PCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQG 121 (352)
Q Consensus 79 ~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~ 121 (352)
.-...|...++.-|+.+.-. ....+.|+++||+++..
T Consensus 54 ~~~~~l~~~~v~~vi~~~iG------~~~~~~l~~~gI~v~~~ 90 (103)
T cd00851 54 KAAEFLADEGVDVVIVGGIG------PRALNKLRNAGIKVYKG 90 (103)
T ss_pred HHHHHHHHcCCCEEEeCCCC------cCHHHHHHHCCCEEEEc
Confidence 45566777899988876432 34678899999999863
No 121
>PRK13337 putative lipid kinase; Reviewed
Probab=21.35 E-value=3.2e+02 Score=25.51 Aligned_cols=67 Identities=19% Similarity=0.159 Sum_probs=42.8
Q ss_pred HHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHc--CCCcEEEEEEeceeecCC
Q psy14502 247 KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE--GCVDELLLYISPILIGEA 316 (352)
Q Consensus 247 ~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~--gLvDEi~l~i~P~ilG~g 316 (352)
..+++.|+++...... ...|..++.+++.+.+...|++.||=.+..+.++. +.-+..-|-+.|. |.+
T Consensus 26 ~~l~~~~~~~~~~~t~-~~~~a~~~a~~~~~~~~d~vvv~GGDGTl~~vv~gl~~~~~~~~lgiiP~--GT~ 94 (304)
T PRK13337 26 QKLEQAGYETSAHATT-GPGDATLAAERAVERKFDLVIAAGGDGTLNEVVNGIAEKENRPKLGIIPV--GTT 94 (304)
T ss_pred HHHHHcCCEEEEEEec-CCCCHHHHHHHHHhcCCCEEEEEcCCCHHHHHHHHHhhCCCCCcEEEECC--cCH
Confidence 4567788775433221 25688888888887788888888886666666641 2223455666675 544
No 122
>PF13727 CoA_binding_3: CoA-binding domain; PDB: 3NKL_B.
Probab=21.35 E-value=74 Score=26.40 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=27.4
Q ss_pred CCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 75 g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
|....+...+.+.+|.+|+++.+..+...-.+-++.+++.|++|..
T Consensus 128 g~~~~l~~~~~~~~id~v~ial~~~~~~~i~~ii~~~~~~~v~v~~ 173 (175)
T PF13727_consen 128 GDLDDLPELVREHDIDEVIIALPWSEEEQIKRIIEELENHGVRVRV 173 (175)
T ss_dssp --GGGHHHHHHHHT--EEEE--TTS-HHHHHHHHHHHHTTT-EEEE
T ss_pred cCHHHHHHHHHhCCCCEEEEEcCccCHHHHHHHHHHHHhCCCEEEE
Confidence 5556789999999999999997544322223456778889998864
No 123
>COG3340 PepE Peptidase E [Amino acid transport and metabolism]
Probab=21.34 E-value=2.4e+02 Score=25.50 Aligned_cols=53 Identities=34% Similarity=0.321 Sum_probs=34.8
Q ss_pred HHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHH--HHHHHHHcCCCc
Q psy14502 246 RKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ--LNTALILEGCVD 302 (352)
Q Consensus 246 ~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~--l~~~fl~~gLvD 302 (352)
.+.+++.|.++..+... +.+++++-+.|.+..+ |+|-||-+ |...+-+.||.|
T Consensus 55 ~~~l~~lg~~v~~L~l~--~~~~~~Ie~~l~~~d~--IyVgGGNTF~LL~~lke~gld~ 109 (224)
T COG3340 55 RNALAKLGLEVSELHLS--KPPLAAIENKLMKADI--IYVGGGNTFNLLQELKETGLDD 109 (224)
T ss_pred HHHHHHcCCeeeeeecc--CCCHHHHHHhhhhccE--EEECCchHHHHHHHHHHhCcHH
Confidence 46677889988877643 5678888888887643 66644433 335555667755
No 124
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=21.30 E-value=2.7e+02 Score=22.59 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=24.6
Q ss_pred HHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEee
Q psy14502 246 RKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287 (352)
Q Consensus 246 ~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veG 287 (352)
+..+...|++++.+.. .-..++..|++.|++-...++
T Consensus 58 a~~l~~~gvdvvi~~~-----iG~~a~~~l~~~GIkv~~~~~ 94 (121)
T COG1433 58 AELLVDEGVDVVIASN-----IGPNAYNALKAAGIKVYVAPG 94 (121)
T ss_pred HHHHHHcCCCEEEECc-----cCHHHHHHHHHcCcEEEecCC
Confidence 4566777777777753 335677777777776665555
No 125
>cd08186 Fe-ADH8 Iron-containing alcohol dehydrogenase. Type III Iron-containing alcohol dehydrogenases (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. The ADH of hyperthermophilic archaeon Thermococcus hydrothermalis oxidizes a series of primary aliphatic and aromatic alcohols preferentially from C2 to C8 but is also active towards methanol and glycerol and stereospecific for monoterpenes. It was suggested that the type III ADHs in microorganisms are involved in acetaldehyde detoxication rather than in alcohol turnover.
Probab=21.16 E-value=4.2e+02 Score=25.75 Aligned_cols=47 Identities=9% Similarity=-0.052 Sum_probs=31.7
Q ss_pred HHHHHhCCcEEEEecCC--CCC-CCHHHHHHHHHhCCCCEEEEeecHHHH
Q psy14502 246 RKILEDLGHEVIVLPNN--LGK-VDLQAVIIELGKRKINELHIEAGYQLN 292 (352)
Q Consensus 246 ~~~l~~~g~~v~~~~~~--~~~-~dl~~~l~~L~~~g~~~i~veGG~~l~ 292 (352)
.+.++..|+++..+..- +.. -++.++++.+++.+..-|+-.|||+..
T Consensus 48 ~~~L~~~gi~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIaiGGGS~i 97 (383)
T cd08186 48 EPALDEHGIEYVLYNKVTPNPTVDQVDEAAKLGREFGAQAVIAIGGGSPI 97 (383)
T ss_pred HHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCccHH
Confidence 35567778877666431 112 246677777888888888888998854
No 126
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=21.12 E-value=2.8e+02 Score=25.87 Aligned_cols=82 Identities=15% Similarity=0.017 Sum_probs=46.7
Q ss_pred CCceEEEEcCC--Ch-hhHHHHHh-CCcEEEEecCCCCC-CCHHHHHHHHHhC-CCCEEEEeecHHHHHHHHHcCCCcEE
Q psy14502 231 GGGSCIFTATD--LP-MKRKILED-LGHEVIVLPNNLGK-VDLQAVIIELGKR-KINELHIEAGYQLNTALILEGCVDEL 304 (352)
Q Consensus 231 ~~~~~v~t~~~--~~-~~~~~l~~-~g~~v~~~~~~~~~-~dl~~~l~~L~~~-g~~~i~veGG~~l~~~fl~~gLvDEi 304 (352)
+.|++++|.+. .+ .+..+|.. .++++-.- .- .+-....+.|+++ +.+++++.|...+..++-.+|+.---
T Consensus 40 g~~~iflTNn~~~s~~~~~~~L~~~~~~~~~~~----~i~TS~~at~~~l~~~~~~~kv~viG~~~l~~~l~~~G~~~~~ 115 (269)
T COG0647 40 GKPVIFLTNNSTRSREVVAARLSSLGGVDVTPD----DIVTSGDATADYLAKQKPGKKVYVIGEEGLKEELEGAGFELVD 115 (269)
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHhhcCCCCCHH----HeecHHHHHHHHHHhhCCCCEEEEECCcchHHHHHhCCcEEec
Confidence 45566666554 22 25566766 34421100 00 1334555566664 66899999999999999888863211
Q ss_pred E---EEEeceeecCC
Q psy14502 305 L---LYISPILIGEA 316 (352)
Q Consensus 305 ~---l~i~P~ilG~g 316 (352)
. ..+..+++|..
T Consensus 116 ~~~~~~~d~Vv~g~d 130 (269)
T COG0647 116 EEEPARVDAVVVGLD 130 (269)
T ss_pred cCCCCcccEEEEecC
Confidence 0 11345777766
No 127
>PF13614 AAA_31: AAA domain; PDB: 2VED_B 2PH1_A 3EA0_B 3FKQ_A 3KB1_B 1ION_A 3LA6_H 3BFV_B 3CIO_D.
Probab=20.83 E-value=97 Score=25.34 Aligned_cols=44 Identities=16% Similarity=0.264 Sum_probs=37.0
Q ss_pred CHHHHHHHHHhCCCCEEEEeecHHHHHHHH--HcCCCcEEEEEEece
Q psy14502 267 DLQAVIIELGKRKINELHIEAGYQLNTALI--LEGCVDELLLYISPI 311 (352)
Q Consensus 267 dl~~~l~~L~~~g~~~i~veGG~~l~~~fl--~~gLvDEi~l~i~P~ 311 (352)
++..+++.|++ .+.-|++..|+.+...+. -..+.|++++.+.|-
T Consensus 106 ~~~~li~~l~~-~yd~IivD~~~~~~~~~~~~~l~~~D~ii~v~~~~ 151 (157)
T PF13614_consen 106 DVEELIDALKE-HYDYIIVDLPSSLSNPDTQAVLELADKIILVVRPD 151 (157)
T ss_dssp HHHHHHHHHHH-HSSEEEEEEESTTTHTHHHHHHTTHSEEEEEEETT
T ss_pred HHHHHHHHHHH-cCCEEEEECcCCccHHHHHHHHHHCCEEEEEECCC
Confidence 67888888888 778899999998887766 578899999998774
No 128
>cd08174 G1PDH-like Glycerol-1-phosphate dehydrogenase-like. Glycerol-1-phosphate dehydrogenase-like. The proteins of this family have not been characterized. The protein sequences have high similarity with that of glycerol-1-phosphate dehydrogenase (G1PDH). G1PDH plays a role in the synthesis of phosphoglycerolipids in Gram-positive bacterial species. It catalyzes the reversibly reduction of dihydroxyacetone phosphate (DHAP) to glycerol-1-phosphate (G1P) in a NADH-dependent manner. Its activity requires Ni++ ion. This family is bacteria specific.
Probab=20.49 E-value=4.8e+02 Score=24.70 Aligned_cols=81 Identities=7% Similarity=0.046 Sum_probs=46.5
Q ss_pred ceEEEEcCCC-hhhHHHHHhCCc-EEEEecCCCCCCCHHHHHHHHHhCC-CCEEEEeecHHHHHH--HHHcCCCcEEEEE
Q psy14502 233 GSCIFTATDL-PMKRKILEDLGH-EVIVLPNNLGKVDLQAVIIELGKRK-INELHIEAGYQLNTA--LILEGCVDELLLY 307 (352)
Q Consensus 233 ~~~v~t~~~~-~~~~~~l~~~g~-~v~~~~~~~~~~dl~~~l~~L~~~g-~~~i~veGG~~l~~~--fl~~gLvDEi~l~ 307 (352)
+++|+|.... ....+.++..++ .+..+.. ...-++.++.+.+.+.+ ..-|+-.|||++... |+.. ..-+-+.
T Consensus 27 r~livtd~~~~~~~~~~L~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~d~iIaiGGGsv~D~aK~vA~--~~~~p~i 103 (331)
T cd08174 27 RVAVVSGPGVGEQVAESLKTSFSAEVEAVEE-VSNSDAEEIGARARSIPNVDAVVGIGGGKVIDVAKYAAF--LRGIPLS 103 (331)
T ss_pred ceEEEECCcHHHHHHHHHHhccCceEEEecC-CCccCHHHHHHHHHhccCCCEEEEeCCcHHHHHHHHHHh--hcCCCEE
Confidence 3445554332 233455666665 4444331 12356778888887764 666777899887633 3322 1235677
Q ss_pred EeceeecCC
Q psy14502 308 ISPILIGEA 316 (352)
Q Consensus 308 i~P~ilG~g 316 (352)
..|...|.+
T Consensus 104 ~vPTt~~tg 112 (331)
T cd08174 104 VPTTNLNDD 112 (331)
T ss_pred EecCccccC
Confidence 889888875
Done!