Query psy14502
Match_columns 352
No_of_seqs 226 out of 1907
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 21:28:39 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14502.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14502hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2b3z_A Riboflavin biosynthesis 100.0 5.6E-85 1.9E-89 631.4 36.6 347 1-352 18-370 (373)
2 2g6v_A Riboflavin biosynthesis 100.0 8.5E-85 2.9E-89 635.1 32.0 345 1-352 34-393 (402)
3 2hxv_A Diaminohydroxyphosphori 100.0 4.1E-82 1.4E-86 608.8 35.7 336 1-352 18-356 (360)
4 2azn_A HTP reductase, putative 100.0 2.6E-44 9E-49 323.8 27.2 209 140-352 1-217 (219)
5 2p4g_A Hypothetical protein; p 100.0 4.3E-40 1.5E-44 305.1 20.7 208 139-352 30-260 (270)
6 2nx8_A TRNA-specific adenosine 100.0 8.9E-34 3E-38 245.7 7.7 137 1-144 20-166 (179)
7 3dh1_A TRNA-specific adenosine 100.0 1E-33 3.5E-38 247.0 7.9 138 1-145 30-185 (189)
8 2b3j_A TRNA adenosine deaminas 100.0 6.2E-33 2.1E-37 236.7 9.8 135 1-142 11-155 (159)
9 2g84_A Cytidine and deoxycytid 100.0 7.3E-33 2.5E-37 243.9 8.8 131 1-138 32-183 (197)
10 1z3a_A TRNA-specific adenosine 100.0 2.1E-32 7.1E-37 235.1 9.9 135 1-142 13-157 (168)
11 2gd9_A Hypothetical protein YY 100.0 3.1E-32 1.1E-36 239.4 9.1 181 139-352 5-187 (189)
12 2a8n_A Cytidine and deoxycytid 100.0 1E-31 3.4E-36 225.8 9.9 127 1-134 8-144 (144)
13 1wwr_A TRNA adenosine deaminas 100.0 7.3E-32 2.5E-36 231.9 7.4 132 1-140 27-168 (171)
14 1wkq_A Guanine deaminase; doma 100.0 1.6E-31 5.6E-36 228.2 6.8 132 1-139 15-160 (164)
15 3jtw_A Dihydrofolate reductase 100.0 1.5E-30 5.1E-35 226.6 12.3 170 143-352 4-177 (178)
16 1p6o_A Cytosine deaminase; hyd 100.0 6.3E-31 2.1E-35 224.5 8.1 127 1-138 18-151 (161)
17 2xw7_A Dihydrofolate reductase 100.0 4.3E-30 1.5E-34 223.7 13.2 167 141-352 2-173 (178)
18 3ky8_A Putative riboflavin bio 100.0 1.1E-29 3.9E-34 224.3 13.9 173 138-352 15-194 (197)
19 1vq2_A DCMP deaminase, deoxycy 100.0 6.9E-29 2.3E-33 218.5 12.9 120 1-131 7-183 (193)
20 2w4l_A DCMP deaminse, deoxycyt 100.0 3.5E-29 1.2E-33 216.7 9.5 127 1-139 17-168 (178)
21 1cz3_A Dihydrofolate reductase 100.0 1.4E-27 4.9E-32 205.8 16.6 160 144-352 2-163 (168)
22 2hvw_A Deoxycytidylate deamina 100.0 1.8E-28 6E-33 212.9 10.2 114 1-125 46-178 (184)
23 3g8q_A Predicted RNA-binding p 99.9 2E-24 6.7E-29 188.5 10.3 89 13-120 17-105 (278)
24 3kgy_A Bifunctional deaminase- 99.9 6.2E-22 2.1E-26 177.7 14.9 175 141-352 19-230 (231)
25 2nyt_A Probable C->U-editing e 99.8 2.7E-21 9.1E-26 168.1 9.5 124 14-148 29-172 (190)
26 1vdr_A DHFR, dihydrofolate red 99.8 5.5E-20 1.9E-24 157.3 16.4 154 145-352 3-157 (162)
27 1zdr_A Dihydrofolate reductase 99.8 7.9E-19 2.7E-23 150.4 16.2 151 145-351 2-159 (164)
28 1kmv_A DHFR, dihydrofolate red 99.8 1.6E-18 5.6E-23 151.4 13.9 149 144-339 3-161 (186)
29 3ix9_A Dihydrofolate reductase 99.8 7.3E-18 2.5E-22 147.1 16.3 155 143-351 23-184 (190)
30 1aoe_A DHFR, dihydrofolate red 99.8 1.1E-18 3.8E-23 153.2 8.7 151 141-339 2-161 (192)
31 3cse_A Dihydrofolate reductase 99.7 6.8E-18 2.3E-22 151.6 11.1 139 141-318 2-151 (227)
32 2w3w_A Dihydrofolate reductase 99.7 1.6E-17 5.6E-22 142.5 13.0 135 141-322 2-138 (167)
33 2w9h_A DHFR, dihydrofolate red 99.7 2.2E-17 7.4E-22 140.7 11.9 147 145-351 3-156 (159)
34 3s9u_A Dihydrofolate reductase 99.7 5.2E-16 1.8E-20 132.6 14.5 143 144-343 5-147 (165)
35 3dfr_A Dihydrofolate reductase 99.7 5.2E-16 1.8E-20 132.4 13.8 142 146-341 2-143 (162)
36 3nzb_X Dihydrofolate reductase 99.7 7.2E-16 2.5E-20 136.5 12.5 139 141-321 3-157 (206)
37 3tq8_A Dihydrofolate reductase 99.6 2.7E-15 9.1E-20 129.4 14.9 143 144-343 2-144 (178)
38 1df7_A DHFR, dihydrofolate red 99.6 7.2E-16 2.5E-20 131.2 10.9 127 145-322 2-130 (159)
39 3ia4_A Dihydrofolate reductase 99.6 4.8E-15 1.6E-19 126.2 14.8 143 144-343 2-144 (162)
40 1j3k_A Bifunctional dihydrofol 99.6 9.1E-15 3.1E-19 134.2 14.6 159 147-351 30-227 (280)
41 3dau_A Dihydrofolate reductase 99.6 1.2E-14 4.3E-19 123.2 12.4 140 145-342 2-141 (159)
42 3nrr_A Dihydrofolate reductase 99.6 2.8E-14 9.5E-19 140.9 14.3 149 141-339 11-172 (515)
43 3hj3_A Chain A, crystal struct 99.5 3.4E-14 1.2E-18 140.4 11.4 150 141-339 3-159 (521)
44 2bl9_A Dihydrofolate reductase 99.5 1.7E-13 5.7E-18 123.3 14.6 146 149-340 31-220 (238)
45 3rg9_A Bifunctional dihydrofol 99.4 3.8E-13 1.3E-17 121.2 9.4 153 140-320 24-197 (240)
46 1juv_A DHFR, dihydrofolate red 99.3 8.9E-13 3E-17 115.5 6.4 149 145-321 2-161 (193)
47 1uwz_A Cytidine deaminase; CDD 99.2 2.4E-11 8.3E-16 100.2 9.1 80 1-88 7-97 (136)
48 2fr5_A Cytidine deaminase; tet 99.1 3.1E-10 1.1E-14 94.4 9.5 81 1-88 19-110 (146)
49 2z3g_A Blasticidin-S deaminase 99.1 4.6E-10 1.6E-14 91.8 10.0 82 1-90 11-101 (130)
50 3irm_A Bifunctional dihydrofol 99.0 1.2E-09 4.1E-14 108.0 12.2 155 139-320 17-191 (521)
51 3qg2_A Bifunctional dihydrofol 99.0 4.1E-09 1.4E-13 105.2 12.9 150 144-339 27-210 (608)
52 3b8f_A Putative blasticidin S 98.5 3E-07 1E-11 76.1 7.9 81 1-90 8-102 (142)
53 1r5t_A Cytidine deaminase; zin 98.5 7.5E-07 2.6E-11 73.7 9.7 80 2-88 16-107 (142)
54 3r2n_A Cytidine deaminase; str 98.4 9.3E-07 3.2E-11 72.5 8.5 86 2-95 15-111 (138)
55 2d30_A Cytidine deaminase; pur 98.4 1.5E-06 5.2E-11 71.6 9.4 87 2-95 17-115 (141)
56 3mpz_A Cytidine deaminase; ssg 97.9 3.1E-05 1.1E-09 64.1 7.6 86 2-94 30-125 (150)
57 1ctt_A Cytidine deaminase; hyd 97.7 8.8E-05 3E-09 68.4 8.6 77 4-88 56-140 (294)
58 1ctt_A Cytidine deaminase; hyd 97.7 0.00011 3.9E-09 67.7 8.4 82 1-89 192-285 (294)
59 3dmo_A Cytidine deaminase; str 97.3 0.0014 4.8E-08 53.4 9.3 79 3-88 17-107 (138)
60 3oj6_A Blasticidin-S deaminase 97.1 0.0043 1.5E-07 51.7 10.8 64 18-88 51-123 (158)
61 4eg2_A Cytidine deaminase; UMP 95.8 0.025 8.5E-07 51.9 8.1 74 8-89 63-144 (298)
62 3v4k_A DNA DC->DU-editing enzy 95.2 0.024 8.2E-07 48.9 5.4 71 41-120 78-160 (203)
63 4eg2_A Cytidine deaminase; UMP 94.4 0.14 4.7E-06 47.0 8.5 80 2-88 197-288 (298)
64 3vow_A Probable DNA DC->DU-edi 92.5 0.51 1.7E-05 40.2 8.4 100 15-120 29-147 (190)
65 3lm8_A Thiamine pyrophosphokin 50.6 13 0.00044 32.3 3.9 47 242-288 56-102 (222)
66 3ihk_A Thiamin pyrophosphokina 49.3 29 0.00098 29.9 5.9 47 242-288 50-97 (218)
67 3k94_A Thiamin pyrophosphokina 48.7 12 0.00042 32.5 3.4 47 242-288 55-101 (223)
68 3mel_A Thiamin pyrophosphokina 44.0 36 0.0012 29.4 5.7 46 243-288 55-101 (222)
69 3s4y_A Thiamin pyrophosphokina 35.7 91 0.0031 27.3 7.1 45 243-288 81-131 (247)
70 2ab1_A Hypothetical protein; H 35.5 65 0.0022 25.0 5.4 51 79-129 52-103 (122)
71 3c2q_A Uncharacterized conserv 34.5 63 0.0022 29.6 5.8 36 268-304 119-167 (345)
72 3l8m_A Probable thiamine pyrop 33.8 26 0.0009 30.0 3.1 45 243-288 54-98 (212)
73 2gm2_A Conserved hypothetical 30.1 60 0.0021 25.5 4.4 50 79-128 55-104 (132)
74 4g65_A TRK system potassium up 29.2 94 0.0032 29.8 6.5 33 266-298 219-253 (461)
75 3ghf_A Septum site-determining 26.3 1E+02 0.0036 23.6 5.2 36 265-300 60-97 (120)
76 4ehi_A Bifunctional purine bio 25.6 2.1E+02 0.0073 27.9 8.1 103 4-119 421-525 (534)
77 2fi9_A Outer membrane protein; 24.7 1.2E+02 0.0041 23.6 5.3 52 78-129 56-109 (128)
78 2fvt_A Conserved hypothetical 24.0 1.3E+02 0.0043 23.8 5.3 50 79-128 56-107 (135)
79 1vlj_A NADH-dependent butanol 23.9 1.5E+02 0.0051 27.7 6.8 85 232-316 44-156 (407)
80 1vk9_A Conserved hypothetical 23.9 96 0.0033 25.1 4.5 49 59-120 61-109 (151)
81 3snk_A Response regulator CHEY 23.8 1.9E+02 0.0066 21.1 6.4 65 209-278 58-130 (135)
82 2yxb_A Coenzyme B12-dependent 23.5 2.8E+02 0.0096 22.1 7.8 38 247-287 40-77 (161)
83 3zzm_A Bifunctional purine bio 23.1 2.5E+02 0.0085 27.4 8.1 101 4-120 413-515 (523)
84 3ezx_A MMCP 1, monomethylamine 23.0 1.7E+02 0.0059 24.7 6.5 62 247-316 114-185 (215)
85 3bfj_A 1,3-propanediol oxidore 23.0 2.8E+02 0.0097 25.4 8.5 70 247-316 57-147 (387)
86 1ccw_A Protein (glutamate muta 22.7 1.5E+02 0.0052 22.9 5.6 61 247-316 25-93 (137)
87 1eo1_A Hypothetical protein MT 22.3 2.2E+02 0.0075 21.4 6.4 41 233-277 66-106 (124)
88 3gv0_A Transcriptional regulat 22.0 2.4E+02 0.0082 24.0 7.5 22 268-289 115-136 (288)
89 3jte_A Response regulator rece 21.7 2.1E+02 0.0073 21.1 6.3 41 231-276 77-118 (143)
90 4e7p_A Response regulator; DNA 21.3 2.1E+02 0.0071 21.5 6.2 42 231-277 94-136 (150)
91 3bul_A Methionine synthase; tr 21.0 3E+02 0.01 27.2 8.5 60 247-316 120-187 (579)
92 3k4h_A Putative transcriptiona 20.3 1.9E+02 0.0066 24.6 6.4 22 268-289 119-140 (292)
No 1
>2b3z_A Riboflavin biosynthesis protein RIBD; alpha/beta/alpha, deaminase domain and reductase domain, hydrolase, oxidoreductase; 2.41A {Bacillus subtilis} SCOP: c.71.1.2 c.97.1.2 PDB: 2d5n_A* 3ex8_A*
Probab=100.00 E-value=5.6e-85 Score=631.42 Aligned_cols=347 Identities=36% Similarity=0.631 Sum_probs=325.6
Q ss_pred CHHHHHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcc
Q psy14502 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (352)
Q Consensus 1 m~~a~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~ 79 (352)
|++|+++|+++ +.+.|||+||||||+||+||++|||...+++|||++||+++ +..++|||||||+|||+|||||||
T Consensus 18 m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a---~~~~~g~tlyvTlePC~~~G~t~~ 94 (373)
T 2b3z_A 18 MKLALDLAKQGEGQTESNPLVGAVVVKDGQIVGMGAHLKYGEAHAEVHAIHMA---GAHAEGADIYVTLEPCSHYGKTPP 94 (373)
T ss_dssp HHHHHHHHGGGTTSSTTSCCCEEEEESSSSEEEEEECCSTTSCCHHHHHHHHH---GGGGTTCEEEESSCCCCCCSSSCC
T ss_pred HHHHHHHHHhhCcccCCCCcEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHh---hHhcCCeEEEEeCCCccCcCCChH
Confidence 89999999999 77899999999999999999999999999999999999999 457899999999999999999999
Q ss_pred hHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhheeccccccccCcceEEEEeecCCCCcccc
Q psy14502 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (352)
Q Consensus 80 C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~~~~rP~V~~~~a~SlDG~ia~ 159 (352)
|+++|+|+||+||||+..||++.+.+.|++.|+++||+|+.+++++||.++++.||++++.+||||++++|+||||+|+.
T Consensus 95 C~~ai~~agi~rVv~~~~d~~~~~~g~~~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~lk~A~SLDG~Ia~ 174 (373)
T 2b3z_A 95 CAELIINSGIKRVFVAMRDPNPLVAGRGISMMKEAGIEVREGILADQAERLNEKFLHFMRTGLPYVTLKAAASLDGKIAT 174 (373)
T ss_dssp HHHHHHHHTCCEEEESSCCSCTTTTTHHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEEEEEEETTSBSSC
T ss_pred HHHHHHHhCCCEEEEEecccchhhhhHHHHHHHhCCeEEEeCCcccccccccceeeeeccccchhheeeeeecCCCceec
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCCCCcccc--CCceEEE
Q psy14502 160 YNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLK--GGGSCIF 237 (352)
Q Consensus 160 ~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~~~~~~~--~~~~~v~ 237 (352)
++|++.|+++++++.++|++|+.+|+||+|++|++.|+|.|++||+...++|.+||+|+++++|++.++|+ ..|+||+
T Consensus 175 ~~G~~~Wit~~~~~~~~~~lr~~~daILvGr~T~~~d~P~Lt~R~~~g~~~P~rvVld~~~~lp~~a~~~~~~~~~~iV~ 254 (373)
T 2b3z_A 175 STGDSKWITSEAARQDAQQYRKTHQSILVGVGTVKADNPSLTCRLPNVTKQPVRVILDTVLSIPEDAKVICDQIAPTWIF 254 (373)
T ss_dssp TTSCCTTSSCHHHHHHHTTHHHHSSEEEEEHHHHHHHCCCCCCCSTTCCSCCEEEEECTTCCCCTTCHHHHSCSSCEEEE
T ss_pred cCCCccccCCHHHHHHHHHHHHHCCEEEEChhhhhhcCCcccccCcCCCCCCeEEEEcCCCCCCCcchhhcCCCCCEEEE
Confidence 99999999999999999999999999999999999999999999864348999999999999999888887 6889999
Q ss_pred EcCC-ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEEEEEeceeecC-
Q psy14502 238 TATD-LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGE- 315 (352)
Q Consensus 238 t~~~-~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~- 315 (352)
|++. +.++...+++.|++++.+.+ ++.|+.++++.|+++|+++|+||||++|+++||++|||||++++++|+++|+
T Consensus 255 t~~~~~~~~~~~l~~~gv~vi~~~~--~~~dl~~~l~~L~~~g~~~vlveGG~~l~~s~L~agLVDEl~l~iaP~llG~~ 332 (373)
T 2b3z_A 255 TTARADEEKKKRLSAFGVNIFTLET--ERIQIPDVLKILAEEGIMSVYVEGGSAVHGSFVKEGCFQEIIFYFAPKLIGGT 332 (373)
T ss_dssp ECTTSCHHHHHHHHTTTCEEEECSS--SSCCHHHHHHHHHHTTCCEEEEEECHHHHHHHHHHTCCSEEEEEEESBCCCCS
T ss_pred EcCCCCHHHHHHHHhCCcEEEEeCC--CCCCHHHHHHHHHHCCCCEEEEEEhHHHHHHHHhCCCceEEEEEEcceEecCC
Confidence 9876 55566778889999988742 3689999999999999999999999999999999999999999999999998
Q ss_pred -CCCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 316 -AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 316 -g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
|+++|++.++..+.+..+|++++++.++++++++|++
T Consensus 333 ~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~dv~l~y~~ 370 (373)
T 2b3z_A 333 HAPSLISGEGFQSMKDVPLLQFTDITQIGRDIKLTAKP 370 (373)
T ss_dssp SSCBSSCSSCCSSTTSSCBEEEEEEEEETTEEEEEEEE
T ss_pred CCcCcccccccccccccccceEeEEEEECCcEEEEEEE
Confidence 7999987777777788999999999999999999974
No 2
>2g6v_A Riboflavin biosynthesis protein RIBD; RIBD APO structure, structural genomics, structural proteomi europe, spine, hydrolase, oxidoreductase; 2.60A {Escherichia coli} PDB: 2obc_A* 2o7p_A*
Probab=100.00 E-value=8.5e-85 Score=635.11 Aligned_cols=345 Identities=42% Similarity=0.713 Sum_probs=304.6
Q ss_pred CHHHHHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcc
Q psy14502 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (352)
Q Consensus 1 m~~a~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~ 79 (352)
|++|+++|+++ +.+.|||+||||||+||+||++|||...+++|||++||+++ +..++|||||||+|||+|||||||
T Consensus 34 m~~A~~~A~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~g~~HAE~~Ai~~a---~~~~~g~tlyvt~ePC~h~G~tp~ 110 (402)
T 2g6v_A 34 MARALKLAQRGRFTTHPNPNVGCVIVKDGEIVGEGYHQRAGEPHAEVHALRMA---GEKAKGATAYVTLEPCSHHGRTPP 110 (402)
T ss_dssp HHHHHHHHHTTTTTCTTSCCCEEEEEETTEEEEEEECCCTTSCCHHHHHHHHH---GGGGGSSCEEESSCCC-------C
T ss_pred HHHHHHHHHhhCccCCCCCCEEEEEEECCEEEEEEeCCCCCccHHHHHHHHHh---hHhcCCeEEEEeCCCcCCCCCchH
Confidence 89999999999 77899999999999999999999999999999999999999 556899999999999999999999
Q ss_pred hHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhheeccccccccCcceEEEEeecCCCCcccc
Q psy14502 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (352)
Q Consensus 80 C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~~~~rP~V~~~~a~SlDG~ia~ 159 (352)
|+++|+|+||+||||+..||++.+.|+|++.|+++||+|+.+++++||.++++.||+++..+||||++++|+||||+||.
T Consensus 111 C~~ai~~agi~rVv~~~~~~~~~~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~~k~A~SLDG~IA~ 190 (402)
T 2g6v_A 111 CCDALIAAGVARVVASMQDPNPQVAGRGLYRLQQAGIDVSHGLMMSEAEQLNKGFLKRMRTGFPYIQLKLGASLDGRTAM 190 (402)
T ss_dssp CHHHHHHTTCSCEEESSCCCSCSSSTTHHHHHHHTTCCEEECTTTTHHHHHTHHHHHHHHSSSCEEEEEEEECTTCBBCC
T ss_pred HHHHHHHhCCCEEEEEecCCCccccchHHHHHHhCCcEEEeCCcchhhHHHhhhhhhccccccchheeeeeecCCCCCcc
Confidence 99999999999999999999999989999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCC------------CCCCCeEEEEcCCCCCCCCCc
Q psy14502 160 YNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIK------------TSHQPYRIVIDSYLRIDPFFR 227 (352)
Q Consensus 160 ~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~------------~~~~p~~vvv~~~~~~~~~~~ 227 (352)
++|++.|+++++++.++|++|+.+||||+|++|++.|+|.|++|+++ ..++|.+||+|+++++|+.++
T Consensus 191 ~~G~s~Wit~~~~r~~~~~lra~~DAILvG~~T~~~d~P~Lt~r~~~~~~~~~~~~~~~~~~~P~rvVld~~~~lp~~a~ 270 (402)
T 2g6v_A 191 ASGESQWITSPQARRDVQLLRAQSHAILTSSATVLADDPALTVRWSELDEQTQALYPQQNLRQPIRIVIDSQNRVTPVHR 270 (402)
T ss_dssp ---CCSCSSCHHHHHHHHHHHHHCSEEEEEHHHHHHHCCCCCCCGGGCCGGGTSSCCGGGCCCCEEEEECTTCCCCTTSG
T ss_pred CCCCcCCcCCHHHHHHHHHHHHhCCEEEECHHHHhhcCcccccccccccccccccccccccCCCeEEEECCCCCCChhhH
Confidence 99999999999999999999999999999999999999999998653 257899999999999999999
Q ss_pred ccc-CCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEEE
Q psy14502 228 VLK-GGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLL 306 (352)
Q Consensus 228 ~~~-~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~l 306 (352)
+|+ ..|+||+|++.... .+ ..|++++.++..++++|+.++++.|+++|+++|+||||++|+++||++|||||++|
T Consensus 271 ~~~~~~~~iV~t~~~~~~---~l-~~gv~vi~~~~~~g~vdl~~~l~~L~~~g~~~vlVEGG~~L~~sfL~agLVDEl~l 346 (402)
T 2g6v_A 271 IVQQPGETWFARTQEDSR---EW-PETVRTLLIPEHKGHLDLVVLMMQLGKQQINSIWVEAGPTLAGALLQAGLVDELIV 346 (402)
T ss_dssp GGSSSSCEEEEESSCCCS---CC-CTTEEEEECCEETTEECHHHHHHHHHHTTCCEEEECCCHHHHHHHHHHTCCCEEEE
T ss_pred hhcCCCCEEEEECCcchh---hh-cCCCEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEEEhHHHHHHHHHCCCccEEEE
Confidence 998 78999999865221 23 56899987763223579999999999999999999999999999999999999999
Q ss_pred EEeceeecC-CCCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 307 YISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 307 ~i~P~ilG~-g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
+++|+++|+ |.|+|++.++..+.+..+|++++++.+++++++.||+
T Consensus 347 ~iaP~llG~~G~~lf~~~~~~~l~~~~~L~l~~~~~~g~dv~~~~y~ 393 (402)
T 2g6v_A 347 YIAPKLLGSDARGLCTLPGLEKLADAPQFKFKEIRHVGPDVCLHLVG 393 (402)
T ss_dssp EECSCCCSSSSCBSCCCCC-------CCCEEEEEEEETTEEEEEEEC
T ss_pred EEccEEeCCCCcCCCCCccccccccccccEEeEEEEECCcEEEEEEE
Confidence 999999998 7999987767667788899999999999999888763
No 3
>2hxv_A Diaminohydroxyphosphoribosylaminopyrimidine deami amino-6-(5-phosphoribosylamino)uracil...; oxidoreductase, structural genomics; HET: NDP; 1.80A {Thermotoga maritima} SCOP: c.71.1.2 c.97.1.2
Probab=100.00 E-value=4.1e-82 Score=608.78 Aligned_cols=336 Identities=32% Similarity=0.511 Sum_probs=310.4
Q ss_pred CHHHHHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcc
Q psy14502 1 MTLALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (352)
Q Consensus 1 m~~a~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~ 79 (352)
|++|+++|+++ +.++|||+||||||+||+||++|||...+++|||++||+++++.+..++|||||||+|||+|||||||
T Consensus 18 m~~al~lA~~~~~~~~~~~~vGaviv~~g~ii~~g~n~~~~~~HAE~~Ai~~a~~~~~~~~g~tlYvTlEPC~h~g~t~~ 97 (360)
T 2hxv_A 18 MKRAIELAKKGLGRVNPNPPVGAVVVKDGRIIAEGFHPYFGGPHAERMAIESARKKGEDLRGATLIVTLEPCDHHGKTPP 97 (360)
T ss_dssp HHHHHHHHHTTTTTSTTSCCCEEEEEETTEEEEEEECCSTTSCCHHHHHHHHHHHTTCCCTTCEEEEEECCCCSCSSSCC
T ss_pred HHHHHHHHHHhccccCCCCCEEEEEEECCEEEEEEeCCCCCCcCHHHHHHHHHHhcCCCcCCcEEEEecCcccccCCCHH
Confidence 89999999999 78899999999999999999999999999999999999999877788999999999999999999999
Q ss_pred hHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhheeccccccccCcceEEEEeecCCCCcccc
Q psy14502 80 CTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQRGIPWVRMKIASSLDNKTSL 159 (352)
Q Consensus 80 C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~~~~rP~V~~~~a~SlDG~ia~ 159 (352)
|+++|+|+||+||||+..||++ +.+.|++.|+++||+|+.|++++||.++++.||++++.+||||++++|+|||||||.
T Consensus 98 C~~ai~~agi~rVv~~~~d~~~-~~g~g~~~l~~~gi~v~~g~l~~e~~~l~~~f~~~~~~~rP~V~lk~A~SLDG~IA~ 176 (360)
T 2hxv_A 98 CTDLIIESGIKTVVIGTRDPNP-VSGNGVEKFRNHGIEVIEGVLEEEVKKLCEFFITYVTKKRPFVALKYASTLDGKIAD 176 (360)
T ss_dssp HHHHHHHHTCCEEEEEECCCCG-GGCCHHHHHHTTTCEEEECTTHHHHHHHTHHHHHHHHHSSCEEEEEEEEETTSEEEC
T ss_pred HHHHHHHhCCCEEEEEecCchh-hhhhHHHHHHhCCcEEEECCccccchhccceeeeccccchhhheeehhhccCCcccC
Confidence 9999999999999999999999 888899999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCCC-CccccC-CceEEE
Q psy14502 160 YNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPF-FRVLKG-GGSCIF 237 (352)
Q Consensus 160 ~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~~-~~~~~~-~~~~v~ 237 (352)
++|++.|++ ++++.++|++|+.+||||+|++|++.|+|.|++|+++ +++|.+||+|+++++|++ +++|+. .+++|+
T Consensus 177 ~~G~s~Wit-~~~~~~~~~lr~~~DAILvG~~T~~~d~P~Lt~r~~~-g~~P~rvVld~~~~~p~~~~~~~~~~~~~iv~ 254 (360)
T 2hxv_A 177 HRGDSKWIT-DKLRFKVHEMRNIYSAVLVGAGTVLKDNPQLTCRLKE-GRNPVRVILDRKGVLSGKVFRVFEENARVIVF 254 (360)
T ss_dssp TTSCCTTSC-STTHHHHHHHHHHSSEEEEEHHHHHHHCCCCCCCSTT-SCCCEEEEECTTCTTTTCCCGGGSSSSCEEEE
T ss_pred CCCCcccCC-HHHHHHHHHHHHHCCEEEECccchhhhCCcccccCCC-CCCCeEEEECCCCCCChhHhHHhcCCCcEEEE
Confidence 999999999 8999999999999999999999999999999999754 589999999999999998 899983 458888
Q ss_pred EcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEEEEEeceeecCCC
Q psy14502 238 TATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEAY 317 (352)
Q Consensus 238 t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~g~ 317 (352)
+++..+++. .|+++ .++ .+|+.++++.|+++|+++|+||||++|+++||++| ||++|+++|+++|+|.
T Consensus 255 t~~~~~~~~-----~~v~v-~~~----~~dl~~~l~~L~~~g~~~vlVeGG~~L~~sfL~ag--DEl~l~iaP~llG~G~ 322 (360)
T 2hxv_A 255 TESEEAEYP-----PHVEK-ALS----DCSVESILRNLYERDIDSVLVEGGSKVFSEFLDHA--DVVFGFYSTKIFGKGL 322 (360)
T ss_dssp ESCSSCCCC-----TTSEE-EEC----CCCHHHHHHHHHHTTCCEEEECCCHHHHHHHGGGC--SEEEEEEESCCCSSSE
T ss_pred ECCCchhhc-----cCcEE-EcC----CCCHHHHHHHHHhCCCCEEEEEecHHHHHHHHHCC--CEEEEEEcceEEcCCC
Confidence 875422111 48888 664 27999999999999999999999999999999999 9999999999999888
Q ss_pred CCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 318 NMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 318 ~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
++|+++ +..+.+..+|++++++.++++++++|++
T Consensus 323 ~lf~~~-~~~~~~~~~L~l~~~~~~g~dv~l~y~~ 356 (360)
T 2hxv_A 323 DVFSGY-LSDVSVPPKFKVVNVEFSDSEFLVEMRP 356 (360)
T ss_dssp ETTTTC-CCCTTSCCCEEEEEEEEETTEEEEEEEE
T ss_pred cccccc-cccccccccceEeEEEEECCcEEEEEEe
Confidence 999765 5556678899999999999999999974
No 4
>2azn_A HTP reductase, putative 5-amino-6-(5-phosphoribosylamino)uracil; oxidoreductase; HET: MA5 NAP EPE; 2.70A {Methanocaldococcus jannaschii} SCOP: c.71.1.2
Probab=100.00 E-value=2.6e-44 Score=323.78 Aligned_cols=209 Identities=34% Similarity=0.480 Sum_probs=190.7
Q ss_pred cCcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCccc-CCCCCCCCCeEEEEcC
Q psy14502 140 RGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNV-RSIKTSHQPYRIVIDS 218 (352)
Q Consensus 140 ~~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~-r~~~~~~~p~~vvv~~ 218 (352)
.+||||++++|+|||||||.++|.+ |+++++++.++|++|+.+||||+|++|++.|+|.|++ |+++ ..+|.+||+|+
T Consensus 1 ~~rP~V~~~~a~SLDG~ia~~~g~~-wit~~~~~~~~~~lr~~~dailvG~~T~~~d~p~L~~~r~~~-~~~P~~vV~d~ 78 (219)
T 2azn_A 1 EKKPYIISNVGMTLDGKLATINNDS-RISCEEDLIRVHKIRANVDGIMVGIGTVLKDDPRLTVHKIKS-DRNPVRIVVDS 78 (219)
T ss_dssp CCCCEEEEEEEEETTCBSSCTTCCC-CCCCHHHHHHHHHHHHTSSEEEEEHHHHHHHCCCCSCCSSCC-SSCCEEEEECT
T ss_pred CCCCEEEEEEEEcCCCCEecCCCCC-CCCCHHHHHHHHHHHHHCCEEEEChhehhhcCCcCccccccC-CCCCEEEEECC
Confidence 3799999999999999999999999 9999999999999999999999999999999999999 8654 57899999999
Q ss_pred CCCCCCCCcccc-CCceEEEEcCC-ChhhHHHHH---hCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHH
Q psy14502 219 YLRIDPFFRVLK-GGGSCIFTATD-LPMKRKILE---DLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNT 293 (352)
Q Consensus 219 ~~~~~~~~~~~~-~~~~~v~t~~~-~~~~~~~l~---~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~ 293 (352)
++++|+++++|+ ..|++|+|++. +.++...++ +.|++++.+++ +++|+.++++.|+++|+++|+||||++|++
T Consensus 79 ~~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~l~~~~~~~~~v~~~~~--~~~dl~~~l~~L~~~g~~~ilveGG~~l~~ 156 (219)
T 2azn_A 79 KLRVPLNARVLNKDAKTIIATTEDTNEEKEKKIKILEDMGVEVVKCGR--GKVDLKKLMDILYDKGIKSILLEGGGTLNW 156 (219)
T ss_dssp TCCCCTTCGGGSTTSCEEEEECSCCCHHHHHHHHHHHHTTCEEEECCS--SSCCHHHHHHHHHHTTCCEEEEEECHHHHH
T ss_pred CCCCCccchhhcCCCCEEEEEcCCCCHHHHHHhhhhhcCCeEEEEcCC--CCcCHHHHHHHHHHcCCCEEEEeeCHHHHH
Confidence 999999999998 78999999876 455556677 78999998763 368999999999999999999999999999
Q ss_pred HHHHcCCCcEEEEEEeceeecC--CCCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 294 ALILEGCVDELLLYISPILIGE--AYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 294 ~fl~~gLvDEi~l~i~P~ilG~--g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
+|+++|||||++++++|+++|+ ++++|++.++..+.+..+|++++++.++++++++|++
T Consensus 157 s~l~~gLvDel~l~iaP~llG~~~~~~lf~~~~~~~~~~~~~l~l~~~~~~~~~v~l~y~~ 217 (219)
T 2azn_A 157 GMFKEGLVDEVSVYIAPKIFGGKEAPTYVDGEGFKTVDECVKLELKNFYRLGEGIVLEFKV 217 (219)
T ss_dssp HHHHTTCCCEEEEEEESCCCCCTTSCBSSCSSCCSSGGGSCCEEEEEEEEETTEEEEEEEE
T ss_pred HHHHCCCCcEEEEEEcCeeecCCCCcCcccCcCccchhhccccEEEEEEEECCeEEEEEEE
Confidence 9999999999999999999997 5899988777777788999999999999999999974
No 5
>2p4g_A Hypothetical protein; pyrimidine reductase-like protein, structural genomics, JOIN for structural genomics, JCSG; 2.30A {Corynebacterium diphtheriae}
Probab=100.00 E-value=4.3e-40 Score=305.13 Aligned_cols=208 Identities=21% Similarity=0.156 Sum_probs=181.8
Q ss_pred ccCcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCccc---CCC------CCCC
Q psy14502 139 QRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNV---RSI------KTSH 209 (352)
Q Consensus 139 ~~~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~---r~~------~~~~ 209 (352)
..+||||++++|+||||| |.++|.+.|+++++++.++|++|+.+||||+|++|++.|+|.+++ ||. +..+
T Consensus 30 ~~~rP~V~lk~a~SLDG~-a~~~g~s~wit~~~~~~~~~~lr~~~DaIlvG~~T~~~d~p~l~~~~~r~~~~r~~~g~~~ 108 (270)
T 2p4g_A 30 TINEPECRAIAITSINGS-ATLSGVSGPMGDQTDADLLIQLRGWADAIVVGAETARKENYGPVVLPHGIKNQRQKLGRCG 108 (270)
T ss_dssp HHHCCEEEEEEEEETTSB-SCBTTBSGGGCCHHHHHHHHHHHHHCSEEEEEHHHHHHTTCCSCCCCHHHHHHHHHTTCCS
T ss_pred CCCCCEEEEEEEECCCCC-cCCCCCccCcCCHHHHHHHHHHHHHCCEEEEChHHhhhhCCccccccccccccccccCCCC
Confidence 368999999999999999 999999999999999999999999999999999999999999887 432 3345
Q ss_pred CCeEEEEcCCCCCCCCCcccc-CCce----EEEEcCCC------hhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC
Q psy14502 210 QPYRIVIDSYLRIDPFFRVLK-GGGS----CIFTATDL------PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR 278 (352)
Q Consensus 210 ~p~~vvv~~~~~~~~~~~~~~-~~~~----~v~t~~~~------~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~ 278 (352)
+|.++|+|+++++|+++++|+ ..++ ||+|++.. .++...+++.|++++.++. +++|+.++++.|+++
T Consensus 109 ~p~~vV~d~~~~~p~~~~~~~~~~~~~~~~~V~t~~~~~~~~~~~~~~~~l~~~gv~vi~~~~--~~~dl~~~l~~L~~~ 186 (270)
T 2p4g_A 109 LPKLTLLSKSLYFDFSSELFSPDLPSELSPLVITQQPANNSEQWDQRLQKLIDVGVEVIVAPT--STNPLKIAFDALHAR 186 (270)
T ss_dssp SCEEEEECSSCCCCTTSGGGCTTSCGGGSCEEEEECCSSCCHHHHHHHHHHHHHTCCEEEECS--SSCHHHHHHHHHHTT
T ss_pred CCcEEEECCCCCCCccchhhcCCCCCcceEEEEEcCccccccchHHHHHHHHhCCCEEEEcCC--CCCCHHHHHHHHHHC
Confidence 899999999999999999998 3455 88887642 4566778888999998874 267999999999999
Q ss_pred CCCEEEEeecHHHHHHHHHcCCCcEEEEEEeceeecC-CCCCCCCCCCCCcccccCceEeEEEEE--cCcEEEEEEC
Q psy14502 279 KINELHIEAGYQLNTALILEGCVDELLLYISPILIGE-AYNMFTLPPHYSLDKKIKLKFHEIQKI--GPDIRILARF 352 (352)
Q Consensus 279 g~~~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~-g~~lf~~~~~~~~~~~~~l~l~~~~~~--g~~v~l~y~~ 352 (352)
|+++|+||||++|+++||++|||||++|+++|+++|+ |.++|.+. .+....+|+|++++.+ ++.++++|++
T Consensus 187 g~~~vlvEGG~~l~~sfL~agLVDEl~l~iaP~llG~~g~~~f~~~---~~~~~~~l~l~~~~~~~~~g~v~l~Y~~ 260 (270)
T 2p4g_A 187 RLKKISIEGGPSVYRQALSLGIVDRLHLTIAPNIICPVESPLFGKI---SDDSFTTRLVLEMLSSSPNGLIFSRYKV 260 (270)
T ss_dssp TCCEEEEEECHHHHHHHHHHTCCCEEEEEEESCCCSSCSSBTTCSC---TTSCCCCCEEEEEEEECTTCCEEEEEEE
T ss_pred CCCEEEEecCHHHHHHHHHCCCCeEEEEEEcCEEEcCCCcCcccCc---CcCcCcceEEEEEEEeccCCEEEEEEEE
Confidence 9999999999999999999999999999999999998 68998651 1356789999999887 5788999973
No 6
>2nx8_A TRNA-specific adenosine deaminase; TAD, hydrolase; 2.00A {Streptococcus pyogenes serotype M6}
Probab=100.00 E-value=8.9e-34 Score=245.73 Aligned_cols=137 Identities=26% Similarity=0.391 Sum_probs=123.2
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCCC----CCCcHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP----GGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~--~~~~~~~~ly~t~ePC~~~ 74 (352)
|++|+++|+++... ++++||||||+||+||++|+|... ++.|||++||+++.++ ...+.|+|||||+|||
T Consensus 20 M~~Al~~A~~a~~~-g~~pVGAVIV~~g~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~~~~~l~g~tlYvTlEPC--- 95 (179)
T 2nx8_A 20 MQEALKESEKSLQK-AEIPIGCVIVKDGEIIGRGHNAREESNQAIMHAEMMAINEANAHEGNWRLLDTTLFVTIEPC--- 95 (179)
T ss_dssp HHHHHHHHHHHHHT-TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEEECCB---
T ss_pred HHHHHHHHHhcccc-CCCCEEEEEEECCEEEEEEECCCCCcCCCccCHHHHHHHHHHHHcCCCcccceEEEECCCCc---
Confidence 78999999998433 467799999999999999999864 5899999999999875 3468999999999999
Q ss_pred CCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhh----CCCeeeecchhhhhhhheeccccccccCcce
Q psy14502 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS----AGISVKQGLMQKEAYEINIGFFSRMQRGIPW 144 (352)
Q Consensus 75 g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~----~gi~v~~~~~~~~~~~l~~~f~~~~~~~rP~ 144 (352)
|||+++|+|+||+||||+..||+....|.+.+.|++ ++++|..+++++||.++++.||.+++.+||.
T Consensus 96 ---~mCa~ai~~agI~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~V~~gvl~~e~~~l~~~f~~~~r~~~~~ 166 (179)
T 2nx8_A 96 ---VMCSGAIGLARIPHVIYGASNQKFGGVDSLYQILTDERLNHRVQVERGLLAADCANIMQTFFRQGRERKKI 166 (179)
T ss_dssp ---HHHHHHHHHTTCCEEEEEECCTTTBTTTTSCCGGGCTTTTCCCEEEECTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHhCCCeEEEEEeCCCCcccccHHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhcCcc
Confidence 699999999999999999999999888878888885 4899999999999999999999998888775
No 7
>3dh1_A TRNA-specific adenosine deaminase 2; zinc-binding protein, TRA tRNA processing, hydrolase, structural genomics, structural consortium, SGC; 2.80A {Homo sapiens}
Probab=100.00 E-value=1e-33 Score=247.01 Aligned_cols=138 Identities=25% Similarity=0.355 Sum_probs=111.1
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECC----CCCCCcHHHHHHHHHHhc----C----CCCCCeEEEEeC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTK----SPGGNHAEIDALLNAAAQ----G----YDVYNSTVYITL 68 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~----~~~~~HaE~~a~~~~~~~----~----~~~~~~~ly~t~ 68 (352)
|++|+++|+++... ++++||||||+||+||++|+|. ..++.|||++||+++.+. + ..+.|||||||+
T Consensus 30 M~~Al~lA~~a~~~-~~~pVGAVIV~~g~IIa~G~N~~~~~~~~t~HAEi~AI~~a~~~~~~~~~~~~~~l~g~tLYvTl 108 (189)
T 3dh1_A 30 MEEAMHMAKEALEN-TEVPVGCLMVYNNEVVGKGRNEVNQTKNATRHAEMVAIDQVLDWCRQSGKSPSEVFEHTVLYVTV 108 (189)
T ss_dssp HHHHHHHHHHHHHT-TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHHHHCCCHHHHHTTEEEEEEE
T ss_pred HHHHHHHHHHhhhC-CCCCEEEEEEECCEEEEEEeCCCCccCCCcCcHHHHHHHHHHHHHhhcCcccccccCCeEEEEeC
Confidence 89999999998322 3567999999999999999997 689999999999998753 2 247899999999
Q ss_pred CCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCCCCcchH----HHHhhhCC--CeeeecchhhhhhhheeccccccccCc
Q psy14502 69 EPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKG----VAQLISAG--ISVKQGLMQKEAYEINIGFFSRMQRGI 142 (352)
Q Consensus 69 ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~----~~~l~~~g--i~v~~~~~~~~~~~l~~~f~~~~~~~r 142 (352)
|||. ||++||+|+||+|||||..+|.....+.. .+.|+..| |+|+.|++++||.+|++.||.+.+.++
T Consensus 109 EPC~------mCa~Aii~agI~rVVyg~~~p~~gg~g~~~~~~~~~l~~~gh~ieV~~Gvl~~e~~~Ll~~Ff~~~~~~~ 182 (189)
T 3dh1_A 109 EPCI------MCAAALRLMKIPLVVYGCQNERFGGCGSVLNIASADLPNTGRPFQCIPGYRAEEAVEMLKTFYKQENPNA 182 (189)
T ss_dssp CCBH------HHHHHHHHHTCCEEEEEECCTTTBTBTTSCBCTTCCCTTSSCCCEEECCTTHHHHHHHHHHHTCC-----
T ss_pred CChH------HHHHHHHHhCCCEEEEEecCCCcccccccccchhhHHHHcCCCeEEEeCccHHHHHHHHHHHHHHhcCCC
Confidence 9995 99999999999999999998875433321 24566667 999999999999999999999999999
Q ss_pred ceE
Q psy14502 143 PWV 145 (352)
Q Consensus 143 P~V 145 (352)
|.-
T Consensus 183 P~~ 185 (189)
T 3dh1_A 183 PKS 185 (189)
T ss_dssp ---
T ss_pred CCC
Confidence 853
No 8
>2b3j_A TRNA adenosine deaminase; mixed alpha-beta, protein-RNA complex, RNA stem-loop, hydrol complex; HET: P5P; 2.00A {Staphylococcus aureus subsp} SCOP: c.97.1.2
Probab=99.98 E-value=6.2e-33 Score=236.67 Aligned_cols=135 Identities=27% Similarity=0.422 Sum_probs=121.2
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCC----CCCCcHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS----PGGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~----~~~~HaE~~a~~~~~~~--~~~~~~~~ly~t~ePC~~~ 74 (352)
|++|+++|+++... ++++||||||+||+||++|+|.. .++.|||++||.++.+. ...+.|+|||+|+|||
T Consensus 11 m~~A~~~A~~a~~~-~~~pVGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~l~~~tlyvT~EPC--- 86 (159)
T 2b3j_A 11 MTLAIEEAKKAAQL-GEVPIGAIITKDDEVIARAHNLRETLQQPTAHAEHIAIERAAKVLGSWRLEGCTLYVTLEPC--- 86 (159)
T ss_dssp HHHHHHHHHHHHHT-TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTEEEEEEECCC---
T ss_pred HHHHHHHHHHhhcC-CCCCEEEEEEECCEEEEEEECCCCCCCCCccCHHHHHHHHHHHHcCCCCcceeEEEECCCCc---
Confidence 78999999998333 57779999999999999999987 68999999999999875 4578999999999999
Q ss_pred CCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhh----CCCeeeecchhhhhhhheeccccccccCc
Q psy14502 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS----AGISVKQGLMQKEAYEINIGFFSRMQRGI 142 (352)
Q Consensus 75 g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~----~gi~v~~~~~~~~~~~l~~~f~~~~~~~r 142 (352)
|||+++|+|+||++|||+.+||+....+.+++.|++ ++++|..+++++||.+|++.||.+++.++
T Consensus 87 ---~mC~~ai~~agi~rVv~~~~~~~~~~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~~ 155 (159)
T 2b3j_A 87 ---VMCAGTIVMSRIPRVVYGADDPKGGCSGSLMNLLQQSNFNHRAIVDKGVLKEACSTLLTTFFKNLRANK 155 (159)
T ss_dssp ---HHHHHHHHHTTCSEEEEEECCTTTCTBTTSCBTTSCTTSSCCCEEECCTTHHHHHHHHHHHHHHHHHC-
T ss_pred ---HHHHHHHHHhCCCeEEEEeeCCCcccccHHHHHHhccccCCCCEEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 699999999999999999999999887878888887 79999999999999999999999876543
No 9
>2g84_A Cytidine and deoxycytidylate deaminase zinc-bindi; zinc-binding region, structural genomics, PSI, protein structure initiative; 1.40A {Nitrosomonas europaea} SCOP: c.97.1.2
Probab=99.97 E-value=7.3e-33 Score=243.87 Aligned_cols=131 Identities=24% Similarity=0.357 Sum_probs=115.2
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe-C-CeEEEEeECC----CCCCCcHHHHHHHHHHhcC--CC-----CCCeEEEEe
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK-E-KRIISCGYTK----SPGGNHAEIDALLNAAAQG--YD-----VYNSTVYIT 67 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~-~-~~i~~~g~~~----~~~~~HaE~~a~~~~~~~~--~~-----~~~~~ly~t 67 (352)
|++|+++|+++...+++| ||||||+ + |+||++|+|. .+++.|||++||++++++. .. ++|+|||||
T Consensus 32 M~~Al~~A~~a~~~~~~P-vGAVIV~~~~g~Iia~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~L~~~~~~g~tlYvT 110 (197)
T 2g84_A 32 MGYVLELVRANIAADGGP-FAAAVFERDSGLLIAAGTNRVVPGRCSAAHAEILALSLAQAKLDTHDLSADGLPACELVTS 110 (197)
T ss_dssp HHHHHHHHHHHHHTTCCS-CEEEEEETTTCBEEEEEECCTTTTTCTTCCHHHHHHHHHHHHHTCSCTTCTTSCCEEEEEE
T ss_pred HHHHHHHHHhhhhcCCCC-EEEEEEEcCCCEEEEEEECCCCccCCCccCHHHHHHHHHHHHcCCccccccCcCCEEEEEe
Confidence 899999999986555788 8999998 8 9999999995 4689999999999998752 22 467999999
Q ss_pred CCCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCCCCcc--------hHHHHhhhCCCeeeecchhhhhhhheecccccc
Q psy14502 68 LEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSG--------KGVAQLISAGISVKQGLMQKEAYEINIGFFSRM 138 (352)
Q Consensus 68 ~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~--------~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~ 138 (352)
+|||. ||++||+|+||+|||||..||+....| .+++.|+++||+|+.+++++||.++++.||.+.
T Consensus 111 lEPC~------mCa~Aii~agI~rVv~g~~d~~~~~~G~~~~~~~~~~~~~l~~~~i~V~~gvl~~e~~~ll~~f~~~~ 183 (197)
T 2g84_A 111 AEPCV------MCFGAVIWSGVRSLVCAARSDDVEAIGFDEGPRPENWMGGLEARGITVTTGLLRDAACALLREYNACN 183 (197)
T ss_dssp ECCCH------HHHHHHHHHCCSEEEEEECHHHHHHTTCCCCCCCTTHHHHHHHTTCEEECCTTHHHHHHHHHHHHHHC
T ss_pred CCCCH------HHHHHHHHhCcCEEEEEecCCCccccCcccccchhHHHHHHhcCCCEEEecCCHHHHHHHHHHHHHcC
Confidence 99995 999999999999999999998765444 577889999999999999999999999999753
No 10
>1z3a_A TRNA-specific adenosine deaminase; tRNA adenosine deaminase, dimer, zinc, metalloenzyme, structural genomics, PSI, protein structure initiative; 2.03A {Escherichia coli} SCOP: c.97.1.2 PDB: 3ocq_A
Probab=99.97 E-value=2.1e-32 Score=235.09 Aligned_cols=135 Identities=30% Similarity=0.491 Sum_probs=120.2
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCC----CCCCcHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS----PGGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~----~~~~HaE~~a~~~~~~~--~~~~~~~~ly~t~ePC~~~ 74 (352)
|++|+++|+++... ++++||||||+||+||++|+|.. +++.|||++||+++.+. ...+.|+|||||+|||
T Consensus 13 M~~A~~~A~~a~~~-~~~pVGAviV~~g~Ii~~G~N~~~~~~d~t~HAE~~Ai~~a~~~~~~~~l~~~tlYvTlEPC--- 88 (168)
T 1z3a_A 13 MRHALTLAKRAWDE-REVPVGAVLVHNNRVIGEGWNRPIGRHDPTAHAEIMALRQGGLVMQNYRLIDATLYVTLEPC--- 88 (168)
T ss_dssp HHHHHHHHHHHHHT-TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSCCTTCEEEEEECCC---
T ss_pred HHHHHHHHHHhhhc-CCCcEEEEEEECCEEEEEEEcccccCCCcchhHHHHHHHHHHHHcCCCcccccEEEEcCCCc---
Confidence 78999999998433 35569999999999999999985 46799999999999876 3468999999999999
Q ss_pred CCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhC----CCeeeecchhhhhhhheeccccccccCc
Q psy14502 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISA----GISVKQGLMQKEAYEINIGFFSRMQRGI 142 (352)
Q Consensus 75 g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~----gi~v~~~~~~~~~~~l~~~f~~~~~~~r 142 (352)
|||+++|+|+||+||||+.+||+....|.+++.|++. +++|..+++++||.++++.||.+++.++
T Consensus 89 ---~mC~~ai~~agi~rVv~g~~d~~~g~~g~~~~~l~~~~~~~~~~v~~gvl~~e~~~l~~~f~~~~r~~~ 157 (168)
T 1z3a_A 89 ---VMCAGAMIHSRIGRVVFGARDAKTGAAGSLMDVLHHPGMNHRVEITEGILADECAALLSDFFRMRRQEI 157 (168)
T ss_dssp ---HHHHHHHHHHTCSEEEEEECCTTTCTBTTSCBCTTCTTCSSCCEEECCTTHHHHHHHHHHHHHHHHTTC
T ss_pred ---HHHHHHHHHHCcCEEEEEecCCCccccchhHHHhhccccCCCcEEEcCCCHHHHHHHHHHHHHHHHhcc
Confidence 6999999999999999999999998888788888865 7999999999999999999999887654
No 11
>2gd9_A Hypothetical protein YYAP; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, oxidoreductase; 2.30A {Bacillus subtilis}
Probab=99.97 E-value=3.1e-32 Score=239.42 Aligned_cols=181 Identities=18% Similarity=0.246 Sum_probs=142.8
Q ss_pred ccCcceEEEEeecCCCCccccCCCCcccc-CCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEc
Q psy14502 139 QRGIPWVRMKIASSLDNKTSLYNNSSQWI-TSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVID 217 (352)
Q Consensus 139 ~~~rP~V~~~~a~SlDG~ia~~~g~~~~i-~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~ 217 (352)
..++|||++++|+|+||+|+.++|.+.|+ +++.+ ++|++|+.+|+||||++|++.+.+. |++ .+| |
T Consensus 5 ~~~~p~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~--~~~~~~~~~dail~Gr~T~~~~~~~----~p~--~~P-----d 71 (189)
T 2gd9_A 5 NLKQRRIILDLAVTLDGFIEGKNGEVDWCIMDPDM--GFTDFLNQIDTILYGRKSFDLWGQY----IPK--NED-----P 71 (189)
T ss_dssp CCCCCCEEEEEEECTTSEEECTTSCCTTCCCCTTS--CHHHHHHTEEEEEEEHHHHHHHTTC------------------
T ss_pred CCCCceEEEEEEEccccceECCCCCcCcccCChHH--HHHHHHhcCCEEEEChHHHhhhhhc----CCC--CCC-----c
Confidence 45689999999999999999999999999 66665 5999999999999999999998643 332 345 4
Q ss_pred CCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHH
Q psy14502 218 SYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALIL 297 (352)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~ 297 (352)
++ +++..++|+..+++|+|++... ... +++++ ..|+.++++.|+++++++|+||||++++++|++
T Consensus 72 ~~--~~~~~~~~~~~~~iV~t~~~~~-----~~~-~~~~~-------~~~l~~~l~~L~~~~~~~i~v~GG~~l~~~~l~ 136 (189)
T 2gd9_A 72 DT--EKELWKLVHSKKKYVFSRTQNE-----IDN-QAIFI-------NDNILEEVNKLKKNPGKDIWLYGGASLITTFIN 136 (189)
T ss_dssp -----CCHHHHHHHSEEEEECCEEET-----TTT-EEECC-------HHHHHHHHHHHHHSCCSEEEEEECHHHHHHHHH
T ss_pred cc--cchhHHHhCCCCEEEEeCCCCC-----CCC-CeEEE-------cCCHHHHHHHHHhCCCCeEEEEChHHHHHHHHH
Confidence 33 5666666665678888865321 111 44433 248999999999999999999999999999999
Q ss_pred cCCCcEEEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEcCcEE-EEEEC
Q psy14502 298 EGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIR-ILARF 352 (352)
Q Consensus 298 ~gLvDEi~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~-l~y~~ 352 (352)
+|||||++++++|+++|+|.++|+. +.+..+|++++++.++++++ ++|++
T Consensus 137 ~glvDel~l~~~P~~lG~g~~~f~~-----~~~~~~l~l~~~~~~~~~~~~l~y~~ 187 (189)
T 2gd9_A 137 LGLVDEFRLSIHPVVLGEGKPLFID-----VKQRINLKMVNTRTFSSGVVQIVYHW 187 (189)
T ss_dssp TTCCCEEEEEECSEECSSSEESSCS-----CCSCEECEEEEEEECTTSCEEEEEEC
T ss_pred CCCceEEEEEEeCEEeCCCCccCCC-----CCCCcceEEEEEEEcCCCEEEEEEEe
Confidence 9999999999999999989888854 23567899999999988776 89974
No 12
>2a8n_A Cytidine and deoxycytidylate deaminase; RNA editing, RNA binding protein; 1.60A {Agrobacterium tumefaciens} SCOP: c.97.1.2
Probab=99.97 E-value=1e-31 Score=225.76 Aligned_cols=127 Identities=28% Similarity=0.388 Sum_probs=102.8
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCCC----CCCcHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP----GGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~--~~~~~~~~ly~t~ePC~~~ 74 (352)
|++|+++|+++... ++++||||||+||+||++|+|... .+.|||++||.++.+. ...++|+|||+|+|||
T Consensus 8 m~~A~~~A~~a~~~-~~~~VGAviv~~g~Ii~~G~N~~~~~~~~~~HAE~~Ai~~a~~~~~~~~~~~~tly~T~ePC--- 83 (144)
T 2a8n_A 8 MELALVEARSAGER-DEVPIGAVLVLDGRVIARSGNRTRELNDVTAHAEIAVIRMACEALGQERLPGADLYVTLEPC--- 83 (144)
T ss_dssp HHHHHHHHHHHHHT-TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTCEEEEEECCB---
T ss_pred HHHHHHHHHHhhcC-CCCCEEEEEEECCEEEEEEECCCCCCCCCcCCHHHHHHHHHHHHcCCCccCCeEEEECCCCh---
Confidence 78999999998333 467799999999999999999864 5999999999999875 4578999999999999
Q ss_pred CCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhh----CCCeeeecchhhhhhhheecc
Q psy14502 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS----AGISVKQGLMQKEAYEINIGF 134 (352)
Q Consensus 75 g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~----~gi~v~~~~~~~~~~~l~~~f 134 (352)
+||+++|+|+||+||||+.+||+....+.+.+.|++ ++++|+.+++++||.++++.|
T Consensus 84 ---~mC~~ai~~~~i~rvv~~~~~~~~~~~g~~~~~~~~~~~~~~~~v~~gvl~~e~~~l~~~f 144 (144)
T 2a8n_A 84 ---TMCAAAISFARIRRLYYGAQDPKGGAVESGVRFFSQPTCHHAPDVYSGLAESESAEILRQF 144 (144)
T ss_dssp ---HHHHHHHHHTTCSEEEEEECCTTTBCSSSTTCGGGSTTCCCCCEEEEC-------------
T ss_pred ---HHHHHHHHHHCCCEEEEeecCCCccccchHHHHHhccccCCCcEEEeCCCHHHHHHHHhcC
Confidence 699999999999999999999999887878888887 899999999999999999877
No 13
>1wwr_A TRNA adenosine deaminase TADA; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.80A {Aquifex aeolicus} SCOP: c.97.1.2
Probab=99.97 E-value=7.3e-32 Score=231.85 Aligned_cols=132 Identities=30% Similarity=0.347 Sum_probs=118.3
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCCC----CCCcHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP----GGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~--~~~~~~~~ly~t~ePC~~~ 74 (352)
|++|+++|+++... ++++||||||+||+||++|+|... ++.|||++||.++.+. ...+.|+|||+|+|||
T Consensus 27 M~~A~~~A~~a~~~-~~~pVGAvIV~dg~Ii~~G~N~~~~~~d~t~HAE~~AI~~a~~~~g~~~l~~~tlYvT~EPC--- 102 (171)
T 1wwr_A 27 LKVALREAKRAFEK-GEVPVGAIIVKEGEIISKAHNSVEELKDPTAHAEMLAIKEACRRLNTKYLEGCELYVTLEPC--- 102 (171)
T ss_dssp HHHHHHHHHHHHHT-TSCCCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTCSCCTTEEEEESSCCB---
T ss_pred HHHHHHHHHhcccC-CCCCEEEEEEECCEEEEEEECCCCccCCcccCHHHHHHHHHHHHcCCCccCceEEEECCCCh---
Confidence 78999999998333 577799999999999999999864 5999999999999875 3578999999999999
Q ss_pred CCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhh----CCCeeeecchhhhhhhheecccccccc
Q psy14502 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLIS----AGISVKQGLMQKEAYEINIGFFSRMQR 140 (352)
Q Consensus 75 g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~----~gi~v~~~~~~~~~~~l~~~f~~~~~~ 140 (352)
|||+++|+|+||++|||+..||+....+.+++.|++ ++++|.. ++++||.++++.||.+++.
T Consensus 103 ---~mC~~ai~~agi~rVv~~~~d~~~g~~g~~~~~l~~~~~~~~i~V~~-vl~~e~~~ll~~f~~~~r~ 168 (171)
T 1wwr_A 103 ---IMCSYALVLSRIEKVIFSALDKKHGGVVSVFNILDEPTLNHRVKWEY-YPLEEASELLSEFFKKLRN 168 (171)
T ss_dssp ---HHHHHHHHHTTCSEEEESSCCTTTBTTTTSCCGGGCTTCSSCCEEEE-CCCHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHCCCEEEEEecCCCccccchHHHHHhccccCCCcEEEE-ecHHHHHHHHHHHHHHHHH
Confidence 699999999999999999999998887777888885 8999998 9999999999999987653
No 14
>1wkq_A Guanine deaminase; domain SWAP, the cytidine deaminase superfamily, substrate specificity, structural plasticity, hydrolase; 1.17A {Bacillus subtilis} SCOP: c.97.1.2 PDB: 1tiy_A
Probab=99.97 E-value=1.6e-31 Score=228.18 Aligned_cols=132 Identities=23% Similarity=0.274 Sum_probs=111.9
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCC----CCCCcHHHHHHHHHHhc--CCCCCCeEEEEeCCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKS----PGGNHAEIDALLNAAAQ--GYDVYNSTVYITLEPCSYF 74 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~----~~~~HaE~~a~~~~~~~--~~~~~~~~ly~t~ePC~~~ 74 (352)
|++|+++|+++...+++++||||||++|+||++|+|.. +++.|||++||+++.+. ...+.|+|||||+|||
T Consensus 15 M~~Al~~A~~a~~~g~~~pVGAVIV~~g~Ii~~G~N~~~~~~d~~~HAE~~AI~~a~~~~~~~~l~g~tlYvT~EPC--- 91 (164)
T 1wkq_A 15 LKRAVTLACEGVNAGIGGPFGAVIVKDGAIIAEGQNNVTTSNDPTAHAEVTAIRKACKVLGAYQLDDCILYTSCEPC--- 91 (164)
T ss_dssp HHHHHHHHHHHHHTTSSSSCEEEEEETTEEEEEEECCHHHHTCTTCCHHHHHHHHHHHHHTSSSCTTEEEEEEECCC---
T ss_pred HHHHHHHHHHHHhcCCCCCEEEEEEECCEEEEEEecCCcCCCCcccCHHHHHHHHHHHHcCCCCcCceEEEEeCCCh---
Confidence 89999999999545657779999999999999999985 45999999999999875 4578999999999999
Q ss_pred CCCcchHHHHHHhCCcEEEEEeeCCCCCCcc----hHHHH----hhhCCCeeeecchhhhhhhheeccccccc
Q psy14502 75 GYTPPCTEALIKSGIKKVIIAINDPNPLVSG----KGVAQ----LISAGISVKQGLMQKEAYEINIGFFSRMQ 139 (352)
Q Consensus 75 g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~----~~~~~----l~~~gi~v~~~~~~~~~~~l~~~f~~~~~ 139 (352)
|||+++|+|+||+||||+.++|+....| ...+. +.+++++| .+++++||.++++.||....
T Consensus 92 ---~mCa~ai~~agI~rVv~g~~~~~~~~~gf~~~~~~~~~~~~~~~~~~~v-~gv~~~e~~~ll~~f~~~~~ 160 (164)
T 1wkq_A 92 ---PMCLGAIYWARPKAVFYAAEHTDAAEAGFDDSFIYKEIDKPAEERTIPF-YQVTLTEHLSPFQAWRNFAN 160 (164)
T ss_dssp ---HHHHHHHHHHCCSEEEEEECHHHHHHTTCSHHHHHHHHTSCGGGSSSCE-EECCCTTTTHHHHHHHHCTT
T ss_pred ---HHHHHHHHHHCCCEEEEEEcCCCccccCcchHHHHHHhcchhhcCCeEE-EecCHHHHHHHHHHHHhccC
Confidence 6999999999999999999998765444 33444 34678888 56999999999999986543
No 15
>3jtw_A Dihydrofolate reductase; YP_805003.1, structural GE joint center for structural genomics, JCSG, protein structu initiative; 1.90A {Pediococcus pentosaceus atcc 25745}
Probab=99.97 E-value=1.5e-30 Score=226.59 Aligned_cols=170 Identities=16% Similarity=0.224 Sum_probs=138.8
Q ss_pred ceEEEEeecCCCCccccCCCCccccCCH----hHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcC
Q psy14502 143 PWVRMKIASSLDNKTSLYNNSSQWITSK----ESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDS 218 (352)
Q Consensus 143 P~V~~~~a~SlDG~ia~~~g~~~~i~~~----~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~ 218 (352)
..|++++|+|+||+|+.++|++.|+++. +++.++|++|+..|+||||++|++.++|.+....++. +++..+|+++
T Consensus 4 ~kv~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~~~ailmGr~T~~~~~p~~~~~~~p~-~~~~~iV~s~ 82 (178)
T 3jtw_A 4 RKVILFIAMSIDNYIADDQGAVDWLEKNVHGTESDDSYEKMYSKIDTVIMGRTTYEQVTQKLSPEKYVY-ADRQTYIVTS 82 (178)
T ss_dssp CCEEEEEEEETTCEEECTTSCCHHHHTTCCCCCCCCHHHHHHHHEEEEEEEHHHHHHHHHHTCSSSCTT-TTSEEEEECS
T ss_pred eEEEEEEEEecceEEECCCCCcCcccccCCccchhhHHHHHHhcCCEEEEChHHHhhhhhccCCCCCCC-CCCCEEEEeC
Confidence 4599999999999999999999999876 5678999999999999999999999987543221121 3344555555
Q ss_pred CCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHc
Q psy14502 219 YLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILE 298 (352)
Q Consensus 219 ~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~ 298 (352)
+...+. .+++++ ..|+.++++.|+++++++|+|+||++++++|+++
T Consensus 83 ~~~~~~---------------------------~~~~~~-------~~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~ 128 (178)
T 3jtw_A 83 HLGEDT---------------------------DKIKYW-------KQSPVELVKRIQKEKGKDVWIVGGAKIIDPLVQA 128 (178)
T ss_dssp SCCCCC---------------------------SSEEEE-------CSCHHHHHHHHHTSSCCEEEEEECHHHHHHHHHT
T ss_pred CCCCCC---------------------------CCEEEE-------cCCHHHHHHHHHhCCCCEEEEEChHHHHHHHHHC
Confidence 443211 233333 2489999999999999999999999999999999
Q ss_pred CCCcEEEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 299 GCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 299 gLvDEi~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
+|+||++++++|+++|+|.++|+. +....+|++++++.++++++++|++
T Consensus 129 ~lvDel~l~~~p~~~G~g~~~f~~-----~~~~~~l~l~~~~~~~~~v~l~Y~r 177 (178)
T 3jtw_A 129 NLIDTYILTTVPIFLGSGIRLFDR-----LEEQVPVRLIDVYQKNELVYSIYQR 177 (178)
T ss_dssp TCCSEEEEEEESCCCCSSEESSSC-----CCSCCCEEEEEEEEETTEEEEEEEE
T ss_pred CCceEEEEEEecEEEcCCCcccCC-----CCcCcceEEeEEEEECCEEEEEEEe
Confidence 999999999999999999999864 3456799999999999999999974
No 16
>1p6o_A Cytosine deaminase; hydrolase, dimer, inhibitor bound; 1.14A {Saccharomyces cerevisiae} SCOP: c.97.1.2 PDB: 1ox7_A 1rb7_A 1ysd_A 1ysb_A 2o3k_A 1uaq_A
Probab=99.97 E-value=6.3e-31 Score=224.48 Aligned_cols=127 Identities=25% Similarity=0.371 Sum_probs=111.3
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEE--eCCeEEEEeECCC----CCCCcHHHHHHHHHHhcC-CCCCCeEEEEeCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIV--KEKRIISCGYTKS----PGGNHAEIDALLNAAAQG-YDVYNSTVYITLEPCSY 73 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv--~~~~i~~~g~~~~----~~~~HaE~~a~~~~~~~~-~~~~~~~ly~t~ePC~~ 73 (352)
|++|+++|+++...+ +++|||||| ++|+||++|+|.. .++.|||++||.++.+.+ ..++|+|||||+|||
T Consensus 18 M~~A~~~A~~a~~~~-~~pVGAviVd~~~g~Ii~~G~N~~~~~~~~t~HAE~~Ai~~a~~~~~~~~~~~tlYvT~EPC-- 94 (161)
T 1p6o_A 18 MDIAYEEAALGYKEG-GVPIGGCLINNKDGSVLGRGHNMRFQKGSATLHGEISTLENCGRLEGKVYKDTTLYTTLSPC-- 94 (161)
T ss_dssp HHHHHHHHHHHHHTT-SCCCEEEEEETTTCCEEEEEECCHHHHTCSSCCHHHHHHHHHCSCCHHHHTTEEEEEEECCC--
T ss_pred HHHHHHHHHhhhccC-CCCEEEEEEEecCCEEEEEEECCCCCCCCcccCHHHHHHHHHHHhCCccccccccccCCCCC--
Confidence 789999999984333 666999999 5999999999985 468999999999996542 257899999999999
Q ss_pred CCCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhhheecccccc
Q psy14502 74 FGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRM 138 (352)
Q Consensus 74 ~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~ 138 (352)
+||+++|+|+||+||||+..+|+. +.+.+.|+++||+|+. ++++||.++++.||++.
T Consensus 95 ----~mC~~ai~~agi~rVv~g~~~~~~---g~~~~~l~~~gi~v~~-~~~~e~~~l~~~f~~~~ 151 (161)
T 1p6o_A 95 ----DMCTGAIIMYGIPRCVVGENVNFK---SKGEKYLQTRGHEVVV-VDDERCKKIMKQFIDER 151 (161)
T ss_dssp ----HHHHHHHHHHTCCEEEEEESSSCC---CTHHHHHHHTTCEEEE-CCCHHHHHHHHHHHHHC
T ss_pred ----HHHHHHHHHhCCCEEEEEecCCCC---ccHHHHHHhcCCEEEE-ecHHHHHHHHHHHHHhC
Confidence 599999999999999999998874 4578999999999998 99999999999998764
No 17
>2xw7_A Dihydrofolate reductase; oxidoreductase, NADPH; HET: PG4 NDP; 2.00A {Mycobacterium smegmatis}
Probab=99.97 E-value=4.3e-30 Score=223.68 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=132.3
Q ss_pred CcceEEEEeecCCCCccccCCCCccccCCHhH----HHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEE
Q psy14502 141 GIPWVRMKIASSLDNKTSLYNNSSQWITSKES----RNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVI 216 (352)
Q Consensus 141 ~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~----~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv 216 (352)
++|+|++++|+|+||+|++++|++.|++++.+ ..+++++|+.+|+||||++|++.+++. ..| +. ..| .+|+
T Consensus 2 ~mp~v~~~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~~dailmGr~T~~~~~~~--~~~-P~-~~~-~iV~ 76 (178)
T 2xw7_A 2 HMVKTVYYTASSLDGYIVDENQSLDWLTSRDITPDGPFGYEQFIETIGVLVMGASTYEWVVEH--GDW-SY-DQP-AWVL 76 (178)
T ss_dssp CSCCEEEEEEEETTSBSSCTTSCCHHHHTSCCCTTSTTCHHHHHHTEEEEEEEHHHHHHHHHS--SCC-CC-SSC-EEEE
T ss_pred CCcEEEEEEEEcccCceECCCCCcccccCCCCcccchhhHHHHHHhCCEEEECHHHHhhhhcC--CCC-CC-CCC-EEEE
Confidence 58999999999999999999999999977533 458899999999999999999988632 112 11 233 4444
Q ss_pred cCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC-CCCEEEEeecHHHHHHH
Q psy14502 217 DSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNTAL 295 (352)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~-g~~~i~veGG~~l~~~f 295 (352)
+++. ++. ....+++++ ..|+.++++.|+++ ++++|+|+||++++++|
T Consensus 77 s~~~-~~~------------------------~~~~~~~~~-------~~dl~~~l~~L~~~~~~~~v~v~GG~~l~~~~ 124 (178)
T 2xw7_A 77 THRP-EIA------------------------AESHPMQVF-------SGDVAELHPELVAAAGGKDVWVVGGGDVAAQF 124 (178)
T ss_dssp CSCG-GGC------------------------BTTBCCEEE-------CSCHHHHHHHHHHHTTTSEEEEEECHHHHHHH
T ss_pred eCCC-CCc------------------------CCCCCEEEE-------CCCHHHHHHHHHhccCCCcEEEEccHHHHHHH
Confidence 5431 110 011244433 24999999999987 56999999999999999
Q ss_pred HHcCCCcEEEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 296 ILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 296 l~~gLvDEi~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
|++|||||++++++|+++|+|.++|+.. . +|++++++.++++++++|++
T Consensus 125 l~~gLvDel~l~~~P~~lG~g~~~f~~~-----~---~l~l~~~~~~~~~v~l~y~~ 173 (178)
T 2xw7_A 125 VAADLIDEIIVSYAPCTLGVGSRVLPMR-----S---EWVLDDCARNGDFVCARWKR 173 (178)
T ss_dssp HHTTCCCEEEEEEESEECSSSSBSSCSC-----E---ECEEEEEEEETTEEEEEEEC
T ss_pred HHCCCCeEEEEEEeceEecCCCcCCCCC-----C---ceEEEeEEEeCCeEEEEEEE
Confidence 9999999999999999999998898543 1 89999999998899999974
No 18
>3ky8_A Putative riboflavin biosynthesis protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE UNL; 2.12A {Shewanella loihica}
Probab=99.96 E-value=1.1e-29 Score=224.28 Aligned_cols=173 Identities=18% Similarity=0.204 Sum_probs=135.6
Q ss_pred cccCcceEEEEeecCCCCccccCCCCccccCCHhH----HHHHHHHHhccceEEEccccccccCCCcccC--CCCCCCCC
Q psy14502 138 MQRGIPWVRMKIASSLDNKTSLYNNSSQWITSKES----RNDSHIWRARSCAILTGIGTVLKDNPRLNVR--SIKTSHQP 211 (352)
Q Consensus 138 ~~~~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~----~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r--~~~~~~~p 211 (352)
..++||+|++++|+|+||+||+++|++.|+++..+ ...++++++..|+||||++||+ +.++++ |+ . ++|
T Consensus 15 ~~~~~p~v~l~~A~SlDG~Ia~~~g~~~W~~~~~~~~~~~~~~~~~~~~~~ailmGr~T~e---~~~~~~~~~P-~-~~~ 89 (197)
T 3ky8_A 15 LYFQGMANIVFIATSLDGYIADKRGKLDWLHSVPNPNNVDTGFVALMERVDGLVMGRNTLD---MVLSFDCDWP-Y-SKP 89 (197)
T ss_dssp TTTTTCEEEEEEEEETTSEEECTTSCCGGGGGSCCTTCCCCSHHHHHHHCSEEEEEHHHHH---HHCCTTCCCC-C-SSC
T ss_pred HhcCCCeEEEEEEECCCCceECCCCCcCcCcCCCccchHHHHHHHHHHhCCEEEEcHHHhH---hHhhcCCCCC-C-CCc
Confidence 45789999999999999999999999999986532 3568999999999999999997 333332 32 1 234
Q ss_pred eEEEEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHH
Q psy14502 212 YRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQL 291 (352)
Q Consensus 212 ~~vvv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l 291 (352)
. +|++++...++.. + ..+++++ ..|+.++++.|+++++++|+|+||+++
T Consensus 90 ~-iVls~~~~~~~~~--~---------------------~~~~~~v-------~~~l~~~l~~L~~~~~~~i~v~GG~~l 138 (197)
T 3ky8_A 90 V-FVLSNTMTEVPQG--Y---------------------EDKVFLV-------KGKLVDIIADLNAKGFNELYIDGGVTI 138 (197)
T ss_dssp E-EEECSSCCSCCTT--C---------------------TTTEEEE-------CSCHHHHHHHHHHTTCCEEEEESHHHH
T ss_pred E-EEEeCCCCCCccc--c---------------------CCCEEEE-------eCCHHHHHHHHHhCCCCeEEEEehHHH
Confidence 3 6666665432110 0 0123322 249999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEcCcE-EEEEEC
Q psy14502 292 NTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDI-RILARF 352 (352)
Q Consensus 292 ~~~fl~~gLvDEi~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v-~l~y~~ 352 (352)
++|+++|||||++|+++|+++|+|.++|+. +....+|++++++.+++++ +++|++
T Consensus 139 -~~~l~~glvDel~l~~~P~~lG~G~~~f~~-----~~~~~~l~l~~~~~~~~g~v~l~Y~~ 194 (197)
T 3ky8_A 139 -QNFLKEDLIDEMVITRFPILLGGGVPLFGE-----LESSLSFNVIKSEVVLDSLTQTTYHR 194 (197)
T ss_dssp -HHHHHTTCCCEEEEEEESEECSSSEESCCC-----CSSCEEEEEEEEEEETTTEEEEEEEE
T ss_pred -HHHHhCCCCCEEEEEEeeEEECCCCcccCC-----CCcCcceEEEEEEEeCCCEEEEEEEE
Confidence 999999999999999999999999999864 2456799999999998875 677863
No 19
>1vq2_A DCMP deaminase, deoxycytidylate deaminase; hydrolase; HET: DDN; 2.20A {Enterobacteria phage T4} SCOP: c.97.1.2
Probab=99.96 E-value=6.9e-29 Score=218.48 Aligned_cols=120 Identities=38% Similarity=0.551 Sum_probs=105.4
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCCC-C---------------------------------------
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP-G--------------------------------------- 40 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~~-~--------------------------------------- 40 (352)
|++|+++|+++ +.++++||||||++|+||++|||..+ +
T Consensus 7 M~~A~~~A~rs--~~~~~~VGAVIV~dg~Iia~G~N~~~~g~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (193)
T 1vq2_A 7 LQIAYLVSQES--KCCSWKVGAVIEKNGRIISTGYNGSPAGGVNCCDYAAEQGWLLNKPKHAIIQGHKPECVSFGSTDRF 84 (193)
T ss_dssp HHHHHHHHTTC--CCSSBCCEEEEEETTEEEEEEECBCCTTSCCHHHHHHHHTCEEEC--------------------CE
T ss_pred HHHHHHHHHhc--CCCCCCEEEEEEECCEEEEEEeCCCCCCCCCcchhhccccccccccccccccccccccccccccccc
Confidence 78999999996 45788899999999999999999876 2
Q ss_pred -----------------CCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCCCC
Q psy14502 41 -----------------GNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLV 103 (352)
Q Consensus 41 -----------------~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~ 103 (352)
+.|||++||.++++.+..+.|+|||||+||| +||+++|+|+||+||||+.++|..
T Consensus 85 ~l~~~~~~~~~~~~~~~~~HAE~~AI~~a~~~g~~~~g~tLYvT~ePC------~~Ca~aIi~aGI~rVvy~~~~~~~-- 156 (193)
T 1vq2_A 85 VLAKEHRSAHSEWSSKNEIHAELNAILFAAENGSSIEGATMYVTLSPC------PDCAKAIAQSGIKKLVYCETYDKN-- 156 (193)
T ss_dssp EECGGGHHHHHHHHHHHCBCHHHHHHHHHHHHTCCCTTCEEEEEECCC------HHHHHHHHHHTCCEEEEEECCTTC--
T ss_pred ccchhhccccccccCCCCCCHHHHHHHHHHhcCCCcCCeEEEEeCCCc------HHHHHHHHHhCCCEEEEecCCCCc--
Confidence 5799999999999888889999999999999 599999999999999999666653
Q ss_pred cchHHHHhhhCCCeeeecchhhhhhhhe
Q psy14502 104 SGKGVAQLISAGISVKQGLMQKEAYEIN 131 (352)
Q Consensus 104 ~~~~~~~l~~~gi~v~~~~~~~~~~~l~ 131 (352)
.+.++++|+++||+|+. +..+++.+++
T Consensus 157 ~~~~~~~l~~aGI~v~~-~~~~~~~~~~ 183 (193)
T 1vq2_A 157 KPGWDDILRNAGIEVFN-VPKKNLNKLN 183 (193)
T ss_dssp CTTTTHHHHHTTCEEEE-CCGGGCCSSC
T ss_pred chHHHHHHHHCCCEEEE-eCHHHHHHhc
Confidence 34456999999999998 7788888765
No 20
>2w4l_A DCMP deaminse, deoxycytidylate deaminase; pyrimidine metabolism, nucleotide biosynthesis, zinc, hexamer, hydrolase, metal-binding, phosphoprotein; 2.10A {Homo sapiens}
Probab=99.96 E-value=3.5e-29 Score=216.71 Aligned_cols=127 Identities=31% Similarity=0.505 Sum_probs=104.5
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC--------------C---------CCcHHHHHHHHHHhcC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP--------------G---------GNHAEIDALLNAAAQG 56 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~--------------~---------~~HaE~~a~~~~~~~~ 56 (352)
|++|+++|+++ ..++++||||||+ ||+||++|||..+ + +.|||++||.+++ +
T Consensus 17 M~~A~~~A~~s--~~p~~~VGAvIV~~dg~Iia~G~N~~~~~~~d~~~~~~~~~g~p~~~~~~~t~HAE~~AI~~a~--g 92 (178)
T 2w4l_A 17 MAVAFLSAQRS--KDPNSQVGACIVNSENKIVGIGYNGMPNGCSDDVLPWRRTAENKLDTKYPYVCHAELNAIMNKN--L 92 (178)
T ss_dssp HHHHHHHHTTC--CCSSCCCEEEEECTTSCEEEEEESBCCTTCCTTTSCCCSCCSSGGGSSTTTCBCHHHHHHHC-----
T ss_pred HHHHHHHHHhc--CCCCCCEEEEEEecCCEEEEEEECCCCcCccccccccccccCCccccccCCcCCHHHHHHHHhc--C
Confidence 78999999995 3568889999995 9999999999864 2 4899999999974 6
Q ss_pred CCCCCeEEEEeCCCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCCC-CcchHHHHhhhCCCeeeecchhhhhhhheeccc
Q psy14502 57 YDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPL-VSGKGVAQLISAGISVKQGLMQKEAYEINIGFF 135 (352)
Q Consensus 57 ~~~~~~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~-~~~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~ 135 (352)
..++|+|||||+|||. ||+++|+|+||+||||+..++... -...|+++|+++||+|+. ++++|.+++..|.
T Consensus 93 ~~~~g~tlYvTlePC~------~Ca~aIi~agI~rVVy~~~~~~d~~~~~~~~~~L~~aGI~V~~--~~~~~~~l~~~f~ 164 (178)
T 2w4l_A 93 TDVKGCSMYVALFPCN------ECAKLIIQAGIKEVIFMSDKYHDSDEATAARLLFNMAGVTFRK--FIPKCSKIVIDFD 164 (178)
T ss_dssp -CCTTCEEEEEECCCH------HHHHHHHHTTCCEEEEEECTTTTSHHHHHHHHHHHHHTCEEEE--CCCSCSEEEEEGG
T ss_pred CCccccEEEEeCCcHH------HHHHHHHHHCCCEEEEEeccCCCCcchHHHHHHHHHCCCEEEE--ccHHHHHHHHHHH
Confidence 7889999999999995 999999999999999998733221 112368999999999987 8999999999997
Q ss_pred cccc
Q psy14502 136 SRMQ 139 (352)
Q Consensus 136 ~~~~ 139 (352)
.+..
T Consensus 165 ~~~~ 168 (178)
T 2w4l_A 165 SINS 168 (178)
T ss_dssp GC--
T ss_pred hhcc
Confidence 7644
No 21
>1cz3_A Dihydrofolate reductase; dimer, hyperthermophIle, oxidoreductase; 2.10A {Thermotoga maritima} SCOP: c.71.1.1 PDB: 1d1g_A*
Probab=99.95 E-value=1.4e-27 Score=205.80 Aligned_cols=160 Identities=16% Similarity=0.206 Sum_probs=129.8
Q ss_pred eEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCC
Q psy14502 144 WVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRID 223 (352)
Q Consensus 144 ~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~ 223 (352)
.|++++|+|+||+|+.++| .|+ +++++.+++++|+.+|+||||++|++. ++ + +.+++|. +|+|++.+.
T Consensus 2 kv~l~~A~slDG~Ia~~~~--~W~-~~~~~~~~~~~~~~~dailmGr~T~~~----l~--~-p~~~~~~-~V~s~~~~~- 69 (168)
T 1cz3_A 2 KVIFVLAMDVSGKIASSVE--SWS-SFEDRKNFRKITTEIGNVVMGRITFEE----IG--R-PLPERLN-VVLTRRPKT- 69 (168)
T ss_dssp EEEEEEEECTTCEEECSCT--TCS-CHHHHHHHHHHHHHHTEEEEEHHHHHH----HC--S-CCTTSEE-EEECSSCCC-
T ss_pred eEEEEEEEcCCCeEECCCC--CCC-ChHHHHHHHHHHHhCCEEEEChHHhhc----CC--C-CCCCCeE-EEECCCCCc-
Confidence 5899999999999999888 899 899999999999999999999999985 22 2 3334555 445665430
Q ss_pred CCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcE
Q psy14502 224 PFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDE 303 (352)
Q Consensus 224 ~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDE 303 (352)
.. ..+++++ ..|+.++++.|+++++++|+|+||++++++|+++||+||
T Consensus 70 ~~-------------------------~~~~~~~-------~~~l~~~l~~l~~~~~~~i~v~GG~~l~~~~l~~~lvDe 117 (168)
T 1cz3_A 70 SN-------------------------NPSLVFF-------NGSPADVVKFLEGKGYERVAVIGGKTVFTEFLREKLVDE 117 (168)
T ss_dssp CS-------------------------CTTEEEE-------CSCHHHHHHHHHHTTCSEEEEEECHHHHHHHHHTTCCSE
T ss_pred cC-------------------------CCCEEEE-------eCCHHHHHHHHHhCCCCEEEEECCHHHHHHHHhCCCCCE
Confidence 00 0122222 248999999999999999999999999999999999999
Q ss_pred EEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEcC--cEEEEEEC
Q psy14502 304 LLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP--DIRILARF 352 (352)
Q Consensus 304 i~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~--~v~l~y~~ 352 (352)
++++++|+++|+|.++|+. ++...+|++++++.+++ .++++|++
T Consensus 118 l~l~~~p~~lG~g~~~f~~-----~~~~~~l~l~~~~~~~~~~~~~l~Y~~ 163 (168)
T 1cz3_A 118 LFVTVEPYVFGKGIPFFDE-----FEGYFPLKLLEMRRLNERGTLFLKYSV 163 (168)
T ss_dssp EEEEECSEEESSCEESSCC-----CSCEEEEEEEEEEECSSSCCEEEEEEE
T ss_pred EEEEEeceecCCCCcCCCC-----CCcccccEEeeeEEeCCCCEEEEEEEE
Confidence 9999999999998888853 34567899999999976 67888863
No 22
>2hvw_A Deoxycytidylate deaminase; 3-layer (alpha-beta)-sandwich, protein-liand complex, hydrolase; HET: DCP DDN; 1.67A {Streptococcus mutans} PDB: 2hvv_A*
Probab=99.95 E-value=1.8e-28 Score=212.91 Aligned_cols=114 Identities=30% Similarity=0.445 Sum_probs=101.6
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEeCCeEEEEeECCCC-------------------CCCcHHHHHHHHHHhcCCCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVKEKRIISCGYTKSP-------------------GGNHAEIDALLNAAAQGYDVYN 61 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~~~~i~~~g~~~~~-------------------~~~HaE~~a~~~~~~~~~~~~~ 61 (352)
|++|+++|+++ +.++++||||||+||+||++|+|... .+.|||++||.++.+.+..++|
T Consensus 46 M~~A~~~A~~s--~~~~~~VGAVIV~dg~Iia~G~N~~~~~~~~c~d~g~~~~~~~~~~t~HAE~~AI~~A~~~g~~l~g 123 (184)
T 2hvw_A 46 MANAELISKRS--TCNRAYVGAVLVKNNRIIATGYNGGVADTDNCDDVGHEMEDGHCIRTVHAEMNALIQCAKEGISANN 123 (184)
T ss_dssp HHHHHHHGGGC--CCTTCCCEEEEEETTEEEEEEECEESTTSCCHHHHCCCEETTEECSEECHHHHHHHHHHHHTCCCTT
T ss_pred HHHHHHHHHhc--CCCCCCEEEEEEECCEEEEEEECCCcccccccccccccccccccCCccCHHHHHHHHHHHcCCCcee
Confidence 78999999996 35788899999999999999999853 2689999999999988888999
Q ss_pred eEEEEeCCCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhh
Q psy14502 62 STVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQK 125 (352)
Q Consensus 62 ~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~ 125 (352)
+|||||+|||. ||+++|+|+||+||||+..+|+.. .++++|+++||+|+...+++
T Consensus 124 ~tlYvTlEPC~------mCa~aIi~agI~rVVy~~~~~~~~---~~~~~L~~aGIeV~~~~~~~ 178 (184)
T 2hvw_A 124 TEIYVTHFPCI------NCTKALLQAGVKKITYNTAYRIHP---FAIELMTQKEVEYVQHDVPR 178 (184)
T ss_dssp EEEEEEECCCH------HHHHHHHHHTEEEEEEEECCSCCH---HHHHHHHHHTCEEEECCCCC
T ss_pred EEEEECCCCHH------HHHHHHHHHCCCeEEEEecCCCCH---HHHHHHHHCCCEEEEecchh
Confidence 99999999995 999999999999999999988753 35899999999999866654
No 23
>3g8q_A Predicted RNA-binding protein, contains thump domain; cytidine deaminase, ferredoxin-like domain; 2.40A {Methanopyrus kandleri}
Probab=99.91 E-value=2e-24 Score=188.48 Aligned_cols=89 Identities=25% Similarity=0.416 Sum_probs=80.5
Q ss_pred CCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcchHHHHHHhCCcEE
Q psy14502 13 NSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKV 92 (352)
Q Consensus 13 ~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~v 92 (352)
.+.|||+||||||++|+||++|.+ ++.|||++||+ +..++|||||+|+|||+ ||+++|+|+||+||
T Consensus 17 ~t~PNPpVGAVIVkDGeIIA~Ge~---gTaHAEInAIr-----g~~L~GaTLYVTLEPC~------MCAgAII~AGIkRV 82 (278)
T 3g8q_A 17 NEIPKRTVTAALLEGGEIVAVEEA---DDEHAERKLVR-----RHDVEGKVVFVTARPCL------YCARELAEAGVAGV 82 (278)
T ss_dssp HHSCCSSCEEEEEETTEEEEEEEC---SSSCHHHHHHH-----HSCCTTCEEEESSCCCH------HHHHHHHTTTCCEE
T ss_pred ccCCCCCEEEEEEECCEEEEecCC---CCCCHHHHHhC-----CCCCCCcEEEEeCCchH------HHHHHHHHhCCCEE
Confidence 567999999999999999999943 99999999997 46789999999999995 99999999999999
Q ss_pred EEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 93 IIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 93 v~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
||+..+ .+.|.++|+++||+|+.
T Consensus 83 VYGa~~-----~G~G~e~LreAGIEV~~ 105 (278)
T 3g8q_A 83 VYLGRG-----RGLGPYYLARSGVEVVE 105 (278)
T ss_dssp EEEECS-----SCCHHHHHHTTTCEEEE
T ss_pred EEEecC-----CChhHHHHHHCCCEEEE
Confidence 999864 25588999999999986
No 24
>3kgy_A Bifunctional deaminase-reductase domain protein; putative dihydrofolate reductase, structural genomics; HET: MSE NDP; 1.50A {Chloroflexus aurantiacus j-10-fl}
Probab=99.88 E-value=6.2e-22 Score=177.67 Aligned_cols=175 Identities=14% Similarity=0.099 Sum_probs=118.6
Q ss_pred CcceEEEEeecCCCCccccCCCC--cc-------c----------cCC----------------HhHHHHHHHHHhccce
Q psy14502 141 GIPWVRMKIASSLDNKTSLYNNS--SQ-------W----------ITS----------------KESRNDSHIWRARSCA 185 (352)
Q Consensus 141 ~rP~V~~~~a~SlDG~ia~~~g~--~~-------~----------i~~----------------~~~~~~~~~lr~~~Da 185 (352)
+...|++.+++|||||++++..+ .. | +.. ..+..++.++.+..|+
T Consensus 19 ~m~kl~~~~~vSLDG~~ag~~~~~~~g~~~~~~~w~~~g~~l~~w~~~~~~~~~~~~~~~~~~~g~d~~~~~~~~~~i~~ 98 (231)
T 3kgy_A 19 GMSKVFVNISLSLDGFMAPEGMDMAHFSDPTYKNWGAKWGALMAWALSQQYLREKLKLGTGGETGPVNDMVRHTFERTGA 98 (231)
T ss_dssp GSCCEEEEEEEETTSEEECTTCSGGGTTCTTGGGHHHHHHHHHHHHHTBHHHHHHTTCCSCCBCSHHHHHHHHHHHTEEE
T ss_pred ccceEEEEEEEcccccccCCCCcCCCCcccccccccCCcHHHhhhhcccccccccccccccccccccHHHHHHHHhcCCE
Confidence 45679999999999999985222 11 2 111 1123455567788999
Q ss_pred EEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCC
Q psy14502 186 ILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGK 265 (352)
Q Consensus 186 il~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~ 265 (352)
+||||+||+.....++..+ + .....+|++++.+.++.. . .++.+..+ .
T Consensus 99 vIMGRkTye~~~~~wp~~~-p--~~r~~iVlS~~~~~~~~~----~--------------------~~~~v~~v-----~ 146 (231)
T 3kgy_A 99 HIMGKRMFEGGERGWPEEA-P--FHTPVYVLTHERRNPWVR----P--------------------GGTTFYFV-----N 146 (231)
T ss_dssp EEEEHHHHHHHHHHSCSSC-S--CCSEEEEECSSCCCCEEE----T--------------------TTEEEEEE-----C
T ss_pred EEEChhhhhhhhhhcCCcC-c--CCCcEEEEcCCCCCcccc----C--------------------CCcEEEEE-----c
Confidence 9999999986532221111 1 133455666655322110 0 11222222 2
Q ss_pred CCHHHHHHHHHh-CCCCEEEEeecHHHHHHHHHcCCCcEEEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEcC
Q psy14502 266 VDLQAVIIELGK-RKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGP 344 (352)
Q Consensus 266 ~dl~~~l~~L~~-~g~~~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~ 344 (352)
.|+.++++.|++ .+.++|+|+||++++++||++|||||++|+++|+++|+|.++|++.. ....+|++. ++.+.+
T Consensus 147 ~~l~eal~~l~~~~~~~~I~V~GG~~l~~~~L~~gLvDel~lti~Pv~lG~G~~lF~~~~----~~~~~l~l~-~~~~~~ 221 (231)
T 3kgy_A 147 DGPEQALALAREAAGERDIRISGGANVIQQYLNLGLVDELEIALIPVIFGGGRRLFENLH----EPLPQFRID-RVLASP 221 (231)
T ss_dssp SCHHHHHHHHHHHHTTSEEEEEECHHHHHHHHHTTCCSEEEEEEESCCCSSSEESSCSCC----SSCCCEEEE-EEEECS
T ss_pred CCHHHHHHHHHhhcCCCcEEEeCCHHHHHHHHhCCCCCEEEEEEeceeccCCCccCCCCC----CccceeEEE-EEEcCC
Confidence 489999999997 69999999999999999999999999999999999999999997542 124578876 456766
Q ss_pred -cEEEEEEC
Q psy14502 345 -DIRILARF 352 (352)
Q Consensus 345 -~v~l~y~~ 352 (352)
-++++|++
T Consensus 222 Gvv~l~Y~r 230 (231)
T 3kgy_A 222 TATHLRYVR 230 (231)
T ss_dssp SCEEEEEEE
T ss_pred CEEEEEEEe
Confidence 56788874
No 25
>2nyt_A Probable C->U-editing enzyme apobec-2; cytidine deaminase, zinc-ION binding, hydrolase; 2.50A {Homo sapiens} PDB: 2rpz_A
Probab=99.84 E-value=2.7e-21 Score=168.14 Aligned_cols=124 Identities=19% Similarity=0.315 Sum_probs=99.9
Q ss_pred CCCCCcEEEEEEe--C---CeEEEEeECCC-CCCCcHHHHHHHHHHhc-CCCCC-CeEEEEeCCCCCCCCCCcchHHHHH
Q psy14502 14 SSPNPRVGCVIVK--E---KRIISCGYTKS-PGGNHAEIDALLNAAAQ-GYDVY-NSTVYITLEPCSYFGYTPPCTEALI 85 (352)
Q Consensus 14 ~~~~p~vgaviv~--~---~~i~~~g~~~~-~~~~HaE~~a~~~~~~~-~~~~~-~~~ly~t~ePC~~~g~t~~C~~~i~ 85 (352)
.+.+..+.|..|+ + +.|+++|+|.. .++.|||++||+++++. +..+. |+|||||+|||+ ||+++|+
T Consensus 29 ~~r~~tyLcy~v~~~~~~~~~ii~~G~~~~~~~~~HAE~~Ai~~a~~~l~~~~~~g~TlYvTlePC~------~Ca~aIi 102 (190)
T 2nyt_A 29 SGRNKTFLCYVVEAQGKGGQVQASRGYLEDEHAAAHAEEAFFNTILPAFDPALRYNVTWYVSSSPCA------ACADRII 102 (190)
T ss_pred CCCCceEEEEEEEecCCCCCCeEEEEECCCCCCCcCHHHHHHHHHHHhcCccccCCeEEEEEcChHH------HHHHHHH
Confidence 4567779999997 3 56999999998 69999999999999752 23444 999999999995 9999999
Q ss_pred Hh-----CCcEEEEEeeCCC---CCCcchHHHHhhhCCCeeeecchhhhhhhheeccccccc-cCc---ceEEEE
Q psy14502 86 KS-----GIKKVIIAINDPN---PLVSGKGVAQLISAGISVKQGLMQKEAYEINIGFFSRMQ-RGI---PWVRMK 148 (352)
Q Consensus 86 ~~-----gi~~vv~~~~~~~---~~~~~~~~~~l~~~gi~v~~~~~~~~~~~l~~~f~~~~~-~~r---P~V~~~ 148 (352)
++ ||++|||+..|+. +.+ ..|.+.|+++||+|.. +..+ +++..|++++. .++ ||+..+
T Consensus 103 ~al~~~~gI~rVV~~~~d~~~~~p~~-~~g~~~L~~aGI~V~~--~~~~--e~~~~w~~fv~~~~~~~~pf~~W~ 172 (190)
T 2nyt_A 103 KTLSKTKNLRLLILVGRLFMWEEPEI-QAALKKLKEAGCKLRI--MKPQ--DFEYVWQNFVEQEEGESKAFQPWE 172 (190)
T ss_pred HhhhhcCCccEEEEEeecCCcCChHH-HHHHHHHHHCCCEEEE--ecHH--HHHHHHHHHHHccCCcCCccHhHH
Confidence 99 9999999998874 232 3789999999999985 4333 56677777776 667 887654
No 26
>1vdr_A DHFR, dihydrofolate reductase; oxidoreductase, halophilic enzyme; 2.55A {Haloferax volcanii} SCOP: c.71.1.1 PDB: 2ith_A 2jyb_A
Probab=99.84 E-value=5.5e-20 Score=157.29 Aligned_cols=154 Identities=9% Similarity=-0.008 Sum_probs=119.6
Q ss_pred EEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCC-CC
Q psy14502 145 VRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLR-ID 223 (352)
Q Consensus 145 V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~-~~ 223 (352)
|++.+|+|+||+|+ ++|+..|+.-+++..++.. ....|++||||+|++... | +. +....+|++++.. ..
T Consensus 3 i~~~~A~s~dG~Ig-~~g~l~W~~~~~d~~~f~~-~t~~~~vimGRkTyes~~------~-pl-~~r~~iV~S~~~~~~~ 72 (162)
T 1vdr_A 3 LVSVAALAENRVIG-RDGELPWPSIPADKKQYRS-RIADDPVVLGRTTFESMR------D-DL-PGSAQIVMSRSERSFS 72 (162)
T ss_dssp EEEEEEEEETSEEE-BTTBCSSCCCHHHHHHHHH-HTSSSCEEEEHHHHHHTT------T-SC-CSSSEEEECSSCCCCC
T ss_pred EEEEEEEcCCCcEE-CCCCccccCChHHHHHHHH-hhCCCEEEEcchHHhhCC------c-cC-CcCeEEEEcCCCcccC
Confidence 78999999999999 8899999445566666655 457899999999998652 2 22 3445677777654 22
Q ss_pred CCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcE
Q psy14502 224 PFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDE 303 (352)
Q Consensus 224 ~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDE 303 (352)
++ ++.++ . |+.++++.|++++.++|+|.||++++++||+ |+||
T Consensus 73 ~~---------------------------~~~~~-------~-~~~~~l~~l~~~~~~~i~viGG~~l~~~~l~--lvDe 115 (162)
T 1vdr_A 73 VD---------------------------TAHRA-------A-SVEEAVDIAASLDAETAYVIGGAAIYALFQP--HLDR 115 (162)
T ss_dssp SS---------------------------SCCEE-------S-SHHHHHHHHHHTTCSCEEEEECHHHHHHHGG--GCSE
T ss_pred CC---------------------------CEEEE-------C-CHHHHHHHHHhCCCCcEEEECCHHHHHHHHH--hCCE
Confidence 11 11111 2 8999999999988899999999999999997 8999
Q ss_pred EEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEcCcEEEEEEC
Q psy14502 304 LLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPDIRILARF 352 (352)
Q Consensus 304 i~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~v~l~y~~ 352 (352)
++|++.|+++ +|.++|+.. + ..+|++++++.+++-++++|++
T Consensus 116 l~lt~ip~~~-~G~~~Fp~~-----~-~~~~~l~~~~~~~~~~~~~Y~~ 157 (162)
T 1vdr_A 116 MVLSRVPGEY-EGDTYYPEW-----D-AAEWELDAETDHEGFTLQEWVR 157 (162)
T ss_dssp EEEEEEEEEC-CCSEECCCC-----C-TTTEEEEEEEECSSCEEEEEEE
T ss_pred EEEEEEcccc-ccCEECCCC-----C-chHCEEEEEecCCCEEEEEEEE
Confidence 9999999999 677888643 2 4689999999988778888863
No 27
>1zdr_A Dihydrofolate reductase; DHFR, NADP, oxidoreductase; 2.00A {Geobacillus stearothermophilus}
Probab=99.80 E-value=7.9e-19 Score=150.38 Aligned_cols=151 Identities=15% Similarity=0.099 Sum_probs=115.0
Q ss_pred EEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCC
Q psy14502 145 VRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDP 224 (352)
Q Consensus 145 V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~ 224 (352)
|++.+|+|+||+|+ ++|+..|.. +++..++.+ ....|++||||+|++... | +. +....+|++++....+
T Consensus 2 i~~~~A~s~dG~Ig-~~g~l~W~~-~~d~~~f~~-~t~~~~vimGRkTyes~~------~-pl-~~r~~iV~S~~~~~~~ 70 (164)
T 1zdr_A 2 ISHIVAMDENRVIG-KDNRLPWHL-PADLAYFKR-VTMGHAIVMGRKTFEAIG------R-PL-PGRDNVVVTGNRSFRP 70 (164)
T ss_dssp EEEEEEEETTCEEE-BTTBCSSCC-HHHHHHHHH-HHTTSEEEEEHHHHHHHC------S-CC-TTSEEEEECSCTTCCC
T ss_pred EEEEEEEcCCCeEe-CCCCcccCC-HHHHHHHHH-HhcCCEEEECCcHHhcCC------C-CC-CCCeEEEEcCCCCcCC
Confidence 68899999999996 889999964 556666655 557899999999998541 2 22 3456677777654221
Q ss_pred CCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEE
Q psy14502 225 FFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDEL 304 (352)
Q Consensus 225 ~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi 304 (352)
. ++.++ . |+.++++.|++ +.++|+|.||++++++||+ |+||+
T Consensus 71 ~---------------------------~~~~~-------~-~~~~~l~~l~~-~~~~i~viGG~~l~~~~l~--lvDel 112 (164)
T 1zdr_A 71 E---------------------------GCLVL-------H-SLEEVKQWIAS-RADEVFIIGGAELFRATMP--IVDRL 112 (164)
T ss_dssp T---------------------------TCEEE-------C-SHHHHHHHHHT-CCSCEEEEECHHHHHHHGG--GCCEE
T ss_pred C---------------------------CeEEE-------C-CHHHHHHHHhc-CCCeEEEECcHHHHHHHHH--hCCEE
Confidence 1 12211 2 89999999987 4789999999999999997 99999
Q ss_pred EEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEc----C---cEEEEEE
Q psy14502 305 LLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIG----P---DIRILAR 351 (352)
Q Consensus 305 ~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g----~---~v~l~y~ 351 (352)
+|++.|+++ +|.++|+.. + ..+|++++.+.++ + -++++|+
T Consensus 113 ~lt~ip~~~-~G~~~Fp~~-----~-~~~~~l~~~~~~~~~~~~~~~~~~~~Y~ 159 (164)
T 1zdr_A 113 YVTKIFASF-PGDTFYPPI-----S-DDEWEIVSYTPGGKDEKNPYEHAFIIYE 159 (164)
T ss_dssp EEEEESSCC-CCSEECCCC-----C-TTTEEEEEEEECCCSSSSCSCEEEEEEE
T ss_pred EEEEecccc-CCcEECCCC-----C-hhHcEEEEEEecccccCCCceEEEEEEE
Confidence 999999999 677888643 2 4689999999887 3 4567775
No 28
>1kmv_A DHFR, dihydrofolate reductase; oxidoreductase, antiparasitic drugs, lipophilic antifolates; HET: LII NDP; 1.05A {Homo sapiens} SCOP: c.71.1.1 PDB: 1dhf_A* 1hfr_A* 1drf_A* 1kms_A* 1ohj_A* 1ohk_A* 1pd8_A* 1pd9_A* 1pdb_A 1s3u_A* 1s3v_A* 1s3w_A* 1u72_A* 1yho_A* 2c2s_A* 2c2t_A* 2dhf_A* 3ghw_A* 3ntz_A* 3nu0_A* ...
Probab=99.78 E-value=1.6e-18 Score=151.44 Aligned_cols=149 Identities=13% Similarity=0.060 Sum_probs=113.1
Q ss_pred eEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccc------eEEEccccccccCCCcccCCCCCCCCCeEEEEc
Q psy14502 144 WVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSC------AILTGIGTVLKDNPRLNVRSIKTSHQPYRIVID 217 (352)
Q Consensus 144 ~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~D------ail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~ 217 (352)
.|++.+|+|+||+| +.+|+..|+.-+++..++.++....| ++||||+|++...+ +.++. +....+|++
T Consensus 3 ~i~~i~A~s~dG~I-g~~g~lpW~~~~~d~~~f~~~t~~~~~~~~~d~viMGRkTyes~~~----~~~pl-~~r~~iVlS 76 (186)
T 1kmv_A 3 SLNCIVAVSQNMGI-GKNGDLPWPPLRNEFRYFQRMTTTSSVEGKQNLVIMGKKTWFSIPE----KNRPL-KGRINLVLS 76 (186)
T ss_dssp CEEEEEEECTTCEE-EBTTBCSSCCCHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCG----GGCSC-TTSEEEEEC
T ss_pred eEEEEEEECCCCCE-eCCCccCCccCcHHHHHHHHHHcCCCCcCCccEEEEechHHhhcCc----ccCCC-CCCeEEEEC
Confidence 47899999999999 78999999555677788888888886 99999999986421 11122 344667777
Q ss_pred CCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC----CCCEEEEeecHHHHH
Q psy14502 218 SYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR----KINELHIEAGYQLNT 293 (352)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~----g~~~i~veGG~~l~~ 293 (352)
++....+. ++.++ ..|+.++++.|++. +.++|+|.||+++++
T Consensus 77 r~~~~~~~---------------------------~~~~v-------~~~~~~al~~lk~~~~~~~~~~i~ViGG~~l~~ 122 (186)
T 1kmv_A 77 RELKEPPQ---------------------------GAHFL-------SRSLDDALKLTEQPELANKVDMVWIVGGSSVYK 122 (186)
T ss_dssp SSCSSCCT---------------------------TCSEE-------ESSHHHHHHHHTSTTTTTTEEEEEECCCHHHHH
T ss_pred CCCccCCC---------------------------CCEEE-------ECCHHHHHHHHhhcccccCCCeEEEEcCHHHHH
Confidence 76542111 11111 13899999999874 478999999999999
Q ss_pred HHHHcCCCcEEEEEEeceeecCCCCCCCCCCCCCcccccCceEeEE
Q psy14502 294 ALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEI 339 (352)
Q Consensus 294 ~fl~~gLvDEi~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~ 339 (352)
+||+++|+||++|++.|+++|+++ +|+.. ...+|++++.
T Consensus 123 ~~l~~~lvDel~lt~ip~~~g~d~-~Fp~~------~~~~~~l~~~ 161 (186)
T 1kmv_A 123 EAMNHPGHLKLFVTRIMQDFESDT-FFPEI------DLEKYKLLPE 161 (186)
T ss_dssp HHHTSCSCEEEEEEEESSCCCCSE-ECCCC------CTTTCEECSC
T ss_pred HHhcCCCCCEEEEEEeCcccCCCe-ECCCC------ChhHcEEEEe
Confidence 999999999999999999999887 88643 1357777765
No 29
>3ix9_A Dihydrofolate reductase; central beta sheet surrounded by 4 alpha helices, oxidoreductase; HET: NDP MTX; 1.95A {Streptococcus pneumoniae}
Probab=99.77 E-value=7.3e-18 Score=147.12 Aligned_cols=155 Identities=15% Similarity=0.041 Sum_probs=115.6
Q ss_pred ceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCC
Q psy14502 143 PWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRI 222 (352)
Q Consensus 143 P~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~ 222 (352)
..|++.+|+|+||+|. ++|+..|.. +++..++.++.. .|++||||+|++... . + +. +....+|++++...
T Consensus 23 r~i~~i~A~s~dG~IG-~~g~lpW~~-~~D~~~fk~~t~-~~~vIMGRkTyesi~-~----~-pl-p~r~~iVlSr~~~~ 92 (190)
T 3ix9_A 23 KKIVAIWAQDEEGVIG-KDNRLPWYL-PAELQHFKETTL-NHAILMGRVTFDGMG-R----R-LL-PKRETLILTRNPEE 92 (190)
T ss_dssp CCEEEEEEECTTCEEE-BTTBCSCCC-HHHHHHHHHHHT-TSEEEEEHHHHHHTT-T----C-CC-TTCEEEEECCSCCS
T ss_pred eeEEEEEEECCCCcEe-CCCCcCCCC-hHHHHHHHHHhc-CCeEEEcCcchhhcC-c----c-CC-CCCEEEEEcCCCCC
Confidence 3589999999999995 899999974 456666666543 499999999998542 1 1 12 22345666766542
Q ss_pred CCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCc
Q psy14502 223 DPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVD 302 (352)
Q Consensus 223 ~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvD 302 (352)
.+ .|+.++ .|+.++++.|+++ .++|+|.||++++++|+. |+|
T Consensus 93 ~~---------------------------~~~~v~--------~~~~eal~~lk~~-~~~i~ViGG~~ly~~~l~--liD 134 (190)
T 3ix9_A 93 KI---------------------------DGVATF--------HDVQSVLDWYSAQ-EKNLYIVGGKQIFQAFEP--YLD 134 (190)
T ss_dssp CC---------------------------SSSEEE--------SSHHHHHHHHHTS-CSCEEEEECHHHHHHHGG--GCS
T ss_pred CC---------------------------CCEEEE--------CCHHHHHHHHHhC-CCCEEEECCHHHHHHHHh--hCC
Confidence 21 122211 2899999999987 689999999999999995 999
Q ss_pred EEEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEcCc-------EEEEEE
Q psy14502 303 ELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIGPD-------IRILAR 351 (352)
Q Consensus 303 Ei~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g~~-------v~l~y~ 351 (352)
|++|++.|+. |+|.++|+.. + +..+|++++.+.+..+ .+++|+
T Consensus 135 el~lt~ip~~-g~Gd~lFp~~-~----~~~~~~lv~~~~~~~~~~~~~~~~f~~y~ 184 (190)
T 3ix9_A 135 EVIVTHIHAR-VEGDTYFPAE-F----DLSLFETVSSKFYTKDEKNPYDFTIQYRK 184 (190)
T ss_dssp EEEEEEESSC-CCCSEECCCC-C----CGGGEEEEEEEEECCBTTBCSCEEEEEEE
T ss_pred EEEEEEeCcc-cccCCcCCCC-C----CccccEEEEEEeccCCCcCCceEEEEEEE
Confidence 9999999999 9999998652 1 2468999999999764 456665
No 30
>1aoe_A DHFR, dihydrofolate reductase; oxidoreductase, antifungal target; HET: NDP GW3; 1.60A {Candida albicans} SCOP: c.71.1.1 PDB: 1ai9_A* 1ia1_A* 1ia2_A* 1ia3_A* 1ia4_A* 1m78_A* 1m79_A* 1m7a_A* 3qlr_A* 3qls_A* 3qlw_A*
Probab=99.76 E-value=1.1e-18 Score=153.24 Aligned_cols=151 Identities=13% Similarity=0.041 Sum_probs=111.0
Q ss_pred CcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHh------ccceEEEccccccccCCCcccCCCCCCCCCeEE
Q psy14502 141 GIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRA------RSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRI 214 (352)
Q Consensus 141 ~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~------~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~v 214 (352)
+||.|++.+|+||||++++++|+..|. -+++..++.++.. ..|++||||+|++...+. |.+. +....+
T Consensus 2 ~~~~i~~i~A~sldg~iig~~g~lpW~-~~~d~~~f~~~t~~~~~~~~~~~viMGRkTyes~~~~----~~pl-~~r~~i 75 (192)
T 1aoe_A 2 LKPNVAIIVAALKPALGIGYKGKMPWR-LRKEIRYFKDVTTRTTKPNTRNAVIMGRKTWESIPQK----FRPL-PDRLNI 75 (192)
T ss_dssp CSCCEEEEEEEETTTTEEEBTTBCSCC-CHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGG----GCSC-TTSEEE
T ss_pred CCCEEEEEEEEcCCCCeECCCCCCCCC-ChhHHHHHHHHhcCCCcccCCCEEEECchHhhccccc----ccCC-CCCeEE
Confidence 579999999999999999999999997 4566677777654 469999999999876322 2222 345667
Q ss_pred EEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHH
Q psy14502 215 VIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294 (352)
Q Consensus 215 vv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~ 294 (352)
|++++..... . ..++ +.. .|+.++++. ++ +.++|+|.||++++++
T Consensus 76 VlS~~~~~~~-----~--------------------~~~~--~v~------~~~~~al~~-~~-~~~~i~ViGG~~l~~~ 120 (192)
T 1aoe_A 76 ILSRSYENEI-----I--------------------DDNI--IHA------SSIESSLNL-VS-DVERVFIIGGAEIYNE 120 (192)
T ss_dssp EECTTCCCEE-----E--------------------ETTE--EEE------SSHHHHHHT-CC-SEEEEEECCCHHHHHH
T ss_pred EEcCCCcccc-----C--------------------CCCE--EEE------CCHHHHHHh-hc-CCCeEEEEcCHHHHHH
Confidence 7777643110 0 0011 111 388999987 44 7889999999999999
Q ss_pred HHHcCCCcEEEEEEeceeecCC---CCCCCCCCCCCcccccCceEeEE
Q psy14502 295 LILEGCVDELLLYISPILIGEA---YNMFTLPPHYSLDKKIKLKFHEI 339 (352)
Q Consensus 295 fl~~gLvDEi~l~i~P~ilG~g---~~lf~~~~~~~~~~~~~l~l~~~ 339 (352)
||+++|+||++|++.|+++|+| .++|+. ....|++++.
T Consensus 121 ~l~~~lvDel~lt~ip~~lG~G~~gd~~fp~-------~~~~~~~~~~ 161 (192)
T 1aoe_A 121 LINNSLVSHLLITEIEHPSPESIEMDTFLKF-------PLESWTKQPK 161 (192)
T ss_dssp HTTSTTEEEEEEEEEECSCGGGSCCCEECCC-------CGGGEEECCH
T ss_pred HhcCCCCCEEEEEEEEcccCCCCccceECCC-------ChHHcEEEee
Confidence 9999999999999999999987 456641 1246776643
No 31
>3cse_A Dihydrofolate reductase; protein-ligand complex, oxidoreductase; HET: NAP N22; 1.60A {Candida glabrata} PDB: 3eej_A* 3eek_A* 3eel_A* 3eem_A* 3qlx_A* 3qly_A* 3qlz_A*
Probab=99.74 E-value=6.8e-18 Score=151.60 Aligned_cols=139 Identities=12% Similarity=0.023 Sum_probs=104.1
Q ss_pred CcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhc------cceEEEccccccccCCCcccCCCCCCCCCeEE
Q psy14502 141 GIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR------SCAILTGIGTVLKDNPRLNVRSIKTSHQPYRI 214 (352)
Q Consensus 141 ~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~------~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~v 214 (352)
.+|.|++.+|+||||++++++|+..|. -+++..++.++... .|++||||+|++...+. |.+. +....|
T Consensus 2 ~~~~i~livA~Sldg~iiG~~g~lpW~-l~~D~~~F~~~t~~~~~~~~~~avIMGRkTyesi~~~----wrPl-p~r~~i 75 (227)
T 3cse_A 2 SKVPVVGIVAALLPEMGIGFQGNLPWR-LAKEMKYFREVTTLTNDNSKQNVVIMGRKTWESIPQK----FRPL-PKRINV 75 (227)
T ss_dssp -CCCEEEEEEEETTTTEEEBTTBCSCC-CHHHHHHHHHHHHCCSSTTCEEEEEEEHHHHHHSCGG----GCSC-TTSEEE
T ss_pred CCcEEEEEEEEcCCCCEECCCCCcCCC-ChHHHHHHHHHHccCCcccccCEEEECchhhhccccc----ccCC-CcCeEE
Confidence 468999999999999999999999997 45666777776644 69999999999865322 2222 344667
Q ss_pred EEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC-----CCCEEEEeecH
Q psy14502 215 VIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-----KINELHIEAGY 289 (352)
Q Consensus 215 vv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~-----g~~~i~veGG~ 289 (352)
|++++...+... . ..+ +++. .|+.++++.|++. +.++|+|.||+
T Consensus 76 VlSr~~~~~~~~---~--------------------~~~--~~v~------~sl~~al~~lk~~~~~~~~~~~I~ViGG~ 124 (227)
T 3cse_A 76 VVSRSFDGELRK---V--------------------EDG--IYHS------NSLRNCLTALQSSLANENKIERIYIIGGG 124 (227)
T ss_dssp EECTTSSSSCEE---E--------------------ETT--EEEE------SCHHHHHHHHTCHHHHTTCEEEEEECCCH
T ss_pred EEeCCCcccccc---C--------------------CCC--EEEe------CCHHHHHHHHHhhhcccCCCCeEEEEcCH
Confidence 777765322100 0 001 1111 3899999999874 77999999999
Q ss_pred HHHHHHHHcCCCcEEEEEEeceeecCCCC
Q psy14502 290 QLNTALILEGCVDELLLYISPILIGEAYN 318 (352)
Q Consensus 290 ~l~~~fl~~gLvDEi~l~i~P~ilG~g~~ 318 (352)
+++++|| +|+||++|++.|+++|+|.+
T Consensus 125 ~ly~~~L--~lvDel~lT~ip~~lG~G~~ 151 (227)
T 3cse_A 125 EIYRQSM--DLADHWLITKIMPLPETTIP 151 (227)
T ss_dssp HHHHHHT--TTCSEEEEEEEEECTTSCCC
T ss_pred HHHHHHH--HhCCEEEEEEEEccccCCCc
Confidence 9999999 99999999999999998743
No 32
>2w3w_A Dihydrofolate reductase; nonclassical antifolates, one-carbon metabolism, lipophilic antifolates, NADP, oxidoreductase; HET: VG9 NDP; 1.60A {Mycobacterium avium} PDB: 2w3v_A*
Probab=99.74 E-value=1.6e-17 Score=142.50 Aligned_cols=135 Identities=11% Similarity=-0.007 Sum_probs=101.3
Q ss_pred CcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCC
Q psy14502 141 GIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYL 220 (352)
Q Consensus 141 ~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~ 220 (352)
.+|.+++.+|+|+||+| +.+|+..|.. +++..++.++.. .+++||||+|++... .++++. +....+|++++.
T Consensus 2 ~~~~i~~i~A~s~dG~I-g~~g~lpW~~-~~d~~~f~~~t~-~~~viMGRkTyes~~----~~~~pl-~~r~~iV~S~~~ 73 (167)
T 2w3w_A 2 TRAEVGLVWAQSTSGVI-GRGGDIPWSV-PEDLTRFKEVTM-GHTVIMGRRTWESLP----AKVRPL-PGRRNVVVSRRP 73 (167)
T ss_dssp -CCCCEEEEEEETTSEE-EBTTBCSCCC-HHHHHHHHHHHT-TSEEEEEHHHHHHSC----GGGSSC-TTSEEEEECSCT
T ss_pred CceEEEEEEEECCCCcC-cCCCCcCccc-hHHHHHHHHHhc-CCeEEEcchHhhhcC----ccccCC-CCCeEEEEeCCC
Confidence 46789999999999999 6789889974 456666666554 599999999998542 111222 344667777765
Q ss_pred CCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCC
Q psy14502 221 RIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGC 300 (352)
Q Consensus 221 ~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gL 300 (352)
...+. ++.++ . |+.+++ +|+ ++.++|+|.||++++++||+ |
T Consensus 74 ~~~~~---------------------------~~~~~-------~-~~~~~l-~l~-~~~~~i~ViGG~~l~~~~l~--l 114 (167)
T 2w3w_A 74 DFVAE---------------------------GARVA-------G-SLEAAL-AYA-GSDPAPWVIGGAQIYLLALP--H 114 (167)
T ss_dssp TCCCT---------------------------TSEEE-------S-SHHHHH-HHT-TTCSSCEEEECHHHHHHHGG--G
T ss_pred CCCCC---------------------------CEEEE-------C-CHHHHH-Hhh-cCCCeEEEEchHHHHHHHHH--H
Confidence 32211 12111 1 788888 676 57789999999999999998 9
Q ss_pred CcEEEEEEeceeec--CCCCCCCC
Q psy14502 301 VDELLLYISPILIG--EAYNMFTL 322 (352)
Q Consensus 301 vDEi~l~i~P~ilG--~g~~lf~~ 322 (352)
+||++|++.|+++| +|.++|+.
T Consensus 115 vDel~lt~ip~~~G~~~Gd~~Fp~ 138 (167)
T 2w3w_A 115 ATRCEVTEIEIDLRRDDDDALAPA 138 (167)
T ss_dssp CSEEEEEEEECCCCCCTTSEECCC
T ss_pred CCEEEEEEEEeecCCCCccEeCCC
Confidence 99999999999999 99999865
No 33
>2w9h_A DHFR, dihydrofolate reductase; oxidoreductase, one-carbon metabolism; HET: TOP; 1.48A {Staphylococcus aureus} PDB: 2w9g_A* 3sqy_X* 3srq_X* 3srr_X* 3srs_X* 3sru_X* 3srw_X* 3frd_X* 3fre_X* 3frf_X* 3fyv_X* 3fyw_X* 3sr5_X* 3frb_X* 3fra_X* 3fy8_X* 3fy9_X* 3fq0_A* 3f0b_X* 3f0s_X* ...
Probab=99.73 E-value=2.2e-17 Score=140.68 Aligned_cols=147 Identities=11% Similarity=0.075 Sum_probs=106.6
Q ss_pred EEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCC
Q psy14502 145 VRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDP 224 (352)
Q Consensus 145 V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~ 224 (352)
+++.+|+|+||+| +.+|+..|.. +++..++.++.. .|++||||+|++... | +. +....+|++++.....
T Consensus 3 i~~~~A~s~dG~I-g~~g~lpW~~-~~d~~~f~~~t~-~~~viMGRkTyes~~------~-pl-~~r~~iV~S~~~~~~~ 71 (159)
T 2w9h_A 3 LSILVAHDLQRVI-GFENQLPWHL-PNDLKHVKKLST-GHTLVMGRKTFESIG------K-PL-PNRRNVVLTSDTSFNV 71 (159)
T ss_dssp EEEEEEECTTCEE-EBTTBCSSCC-HHHHHHHHHHHT-TSEEEEEHHHHHHHC------S-CC-TTSEEEEECSCTTCCC
T ss_pred EEEEEEECCCCeE-cCCCccCccc-hHHHHHHHHHhc-CCEEEECCChhhccc------c-cC-CCCEEEEEcCCCCcCC
Confidence 7899999999999 7899999975 456666655544 899999999998541 2 22 2345677777653211
Q ss_pred CCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEE
Q psy14502 225 FFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDEL 304 (352)
Q Consensus 225 ~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi 304 (352)
. .+.++ . ++.++++. .++|+|.||++++++|++ |+||+
T Consensus 72 ~-------~~~~~---------------------------~-~~~~~l~~-----~~~i~viGG~~l~~~~l~--lvDel 109 (159)
T 2w9h_A 72 E-------GVDVI---------------------------H-SIEDIYQL-----PGHVFIFGGQTLFEEMID--KVDDM 109 (159)
T ss_dssp T-------TCEEE---------------------------C-SGGGGGGS-----CSCEEEEECHHHHHHHTT--TCSEE
T ss_pred C-------CeEEE---------------------------C-CHHHHHhc-----CCcEEEEChHHHHHHHHH--hCCEE
Confidence 0 01111 1 45555543 578999999999999996 99999
Q ss_pred EEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEc----C---cEEEEEE
Q psy14502 305 LLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIG----P---DIRILAR 351 (352)
Q Consensus 305 ~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g----~---~v~l~y~ 351 (352)
+|++.|+++ +|.++|+.. + ..+|++++.+.++ + -++++|+
T Consensus 110 ~lt~ip~~~-~Gd~~Fp~~-----~-~~~~~l~~~~~~~~~~~~~~~~~~~~Y~ 156 (159)
T 2w9h_A 110 YITVIEGKF-RGDTFFPPY-----T-FEDWEVASSVEGKLDEKNTIPHTFLHLI 156 (159)
T ss_dssp EEEEECSCC-CCSEECCCC-----C-TTTEEEEEEEECCCBTTBCSCEEEEEEE
T ss_pred EEEEecccc-cCCeeCCCC-----C-hhHcEEEEEEeccccccCCccEEEEEEE
Confidence 999999999 777888643 2 3589999999886 3 4566775
No 34
>3s9u_A Dihydrofolate reductase; oxidoreductase; HET: NAP 5DR; 1.90A {Bacillus anthracis} PDB: 3sa1_A* 3sa2_A* 3sai_A* 3e0b_A* 3jvx_A* 3jwm_A* 3jwk_A* 3jw5_A* 3jwf_A* 3jwc_A* 3jw3_A* 3dat_A* 2qk8_A* 3fl8_A* 3fl9_A* 2kgk_A*
Probab=99.68 E-value=5.2e-16 Score=132.61 Aligned_cols=143 Identities=15% Similarity=0.076 Sum_probs=106.4
Q ss_pred eEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCC
Q psy14502 144 WVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRID 223 (352)
Q Consensus 144 ~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~ 223 (352)
.+.+.+|+|+||+|+ .+|+..|. -+++..++.++.. .+++||||+|++.-. + +.+. ...+|++++...+
T Consensus 5 ~i~li~A~s~dg~Ig-~~g~lpW~-~~~D~~~F~~~t~-~~~vIMGRkTyesi~------~-plp~-r~~iVlSr~~~~~ 73 (165)
T 3s9u_A 5 RVSFMVAMDENRVIG-KDNNLPWR-LPSELQYVKKTTM-GHPLIMGRKNYEAIG------R-PLPG-RRNIIVTRNEGYH 73 (165)
T ss_dssp EEEEEEEEETTCEEE-BTTBCSCC-CHHHHHHHHHHHT-TSCEEEEHHHHHHHC------S-CCTT-SCEEEECSCTTCC
T ss_pred EEEEEEEECCCCcEE-CCCCcCCC-CHhHHHHHHHhhc-CCEEEEcchHHhhhh------h-ccCC-CeEEEECCCCccC
Confidence 588999999999997 58999996 4566666665543 499999999998542 1 2222 2346666665322
Q ss_pred CCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcE
Q psy14502 224 PFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDE 303 (352)
Q Consensus 224 ~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDE 303 (352)
+ .|+.++ .|+.++++.|++. ++|+|.||++++++|+ +|+||
T Consensus 74 ~---------------------------~~v~v~--------~~~~~al~~l~~~--~~i~viGG~~iy~~~l--~l~De 114 (165)
T 3s9u_A 74 V---------------------------EGCEVA--------HSVEEVFELCKNE--EEIFIFGGAQIYDLFL--PYVDK 114 (165)
T ss_dssp C---------------------------TTCEEE--------SSHHHHHHHTTTC--SEEEECCCHHHHHHHG--GGCCE
T ss_pred C---------------------------CCEEEE--------CCHHHHHHHhhcC--CCEEEECCHHHHHHHH--hhCCE
Confidence 1 122221 1889999998875 6999999999999999 69999
Q ss_pred EEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEc
Q psy14502 304 LLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343 (352)
Q Consensus 304 i~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g 343 (352)
++|++.|+.+ +|.++|+.. +..+|++++.+...
T Consensus 115 l~lT~ip~~~-~Gd~~Fp~~------~~~~~~l~~~~~~~ 147 (165)
T 3s9u_A 115 LYITKIHHAF-EGDTFFPEM------DMTNWKEVFVEKGL 147 (165)
T ss_dssp EEEEEESSCC-CCSEECCCC------CCTTEEEEEEEECC
T ss_pred EEEEEccccc-cCCCcCCCC------ChHHCEEEEEEecc
Confidence 9999999999 788898643 22489999988764
No 35
>3dfr_A Dihydrofolate reductase; oxido-reductase; HET: NDP MTX; 1.70A {Lactobacillus casei} SCOP: c.71.1.1 PDB: 1ao8_A* 1bzf_A* 1dis_A* 1diu_A* 1lud_A* 2hm9_A* 2hqp_A* 2l28_A 2lf1_A*
Probab=99.68 E-value=5.2e-16 Score=132.35 Aligned_cols=142 Identities=16% Similarity=0.058 Sum_probs=105.3
Q ss_pred EEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCCC
Q psy14502 146 RMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPF 225 (352)
Q Consensus 146 ~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~~ 225 (352)
.+.+|+|+||+|. .+|+..|.- +++..++.++.. .|++||||+|++.... + +. +....+|++++...++
T Consensus 2 ~li~A~s~dg~IG-~~g~lpW~~-~~D~~~F~~~t~-~~~viMGRkTyes~~~----~--pl-p~r~~iVlS~~~~~~~- 70 (162)
T 3dfr_A 2 AFLWAQNRNGLIG-KDGHLPWHL-PDDLHYFRAQTV-GKIMVVGRRTYESFPK----R--PL-PERTNVVLTHQEDYQA- 70 (162)
T ss_dssp EEEEEECTTCEEE-BTTBCSSCC-HHHHHHHHHTTT-TSEEEEEHHHHHHSSS----S--SC-TTSEEEEECSCTTCCC-
T ss_pred EEEEEECCCCeEe-CCCCCCCCc-HHHHHHHHHHhc-CCeEEEecchhhhccc----c--cC-CCCcEEEEcCCCCCCC-
Confidence 4678999999995 699999964 455555555433 5999999999985520 1 11 2345567777654321
Q ss_pred CccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEE
Q psy14502 226 FRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELL 305 (352)
Q Consensus 226 ~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~ 305 (352)
.++.++ .|+.++++.|++++.++|+|.||++++++|+. |+||++
T Consensus 71 --------------------------~~~~~~--------~~~~~~l~~lk~~~~~~i~viGG~~l~~~~l~--l~Del~ 114 (162)
T 3dfr_A 71 --------------------------QGAVVV--------HDVAAVFAYAKQHLDQELVIAGGAQIFTAFKD--DVDTLL 114 (162)
T ss_dssp --------------------------TTSEEE--------SSHHHHHHHHHHCCSSCEEECCCHHHHHHTGG--GCCEEE
T ss_pred --------------------------CCEEEE--------CCHHHHHHHHhcCCCCCEEEECCHHHHHHHHh--hCCEEE
Confidence 122222 18999999999998899999999999999994 999999
Q ss_pred EEEeceeecCCCCCCCCCCCCCcccccCceEeEEEE
Q psy14502 306 LYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQK 341 (352)
Q Consensus 306 l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~ 341 (352)
|++.|..+ +|.++|+.. + ..+|++++.+.
T Consensus 115 lT~i~~~~-~Gd~~Fp~~-----~-~~~~~l~~~~~ 143 (162)
T 3dfr_A 115 VTRLAGSF-EGDTKMIPL-----N-WDDFTKVSSRT 143 (162)
T ss_dssp EEEESSCC-CCSEECCCC-----C-GGGEEEEEEEE
T ss_pred EEEecccc-cccCcCCCC-----C-hhHcEEEEEEc
Confidence 99989888 788998653 2 35899998876
No 36
>3nzb_X Dihydrofolate reductase; pneumocystius carinii DHFR inhibitor complexes, oxidoreducta oxidoreductase-oxidoreductase inhibitor complex; HET: D2N NAP; 1.45A {Pneumocystis carinii} SCOP: c.71.1.1 PDB: 1daj_A* 1cd2_A* 1e26_A* 1klk_A* 1ly3_A* 1ly4_A* 1s3y_A* 2cd2_A* 2fzh_A* 1dyr_A* 3cd2_A* 3nz6_X* 3nz9_X* 3nza_X* 2fzi_A* 3nzc_X* 3td8_A* 4cd2_A* 1vj3_A*
Probab=99.65 E-value=7.2e-16 Score=136.51 Aligned_cols=139 Identities=17% Similarity=0.063 Sum_probs=104.9
Q ss_pred CcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhc---------cceEEEccccccccCCCcccCCCCCCCCC
Q psy14502 141 GIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR---------SCAILTGIGTVLKDNPRLNVRSIKTSHQP 211 (352)
Q Consensus 141 ~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~---------~Dail~G~~T~~~d~p~l~~r~~~~~~~p 211 (352)
..|.+++.+|+|+||+|+. +|+..|. -+++..++.++... .+++||||+|++..... ..+. +..
T Consensus 3 ~~~~i~livA~s~dg~IG~-~g~lpW~-l~~D~~~F~~~t~~~~~~~~~~~~~~vIMGRkTyesi~~~----~~Pl-~~r 75 (206)
T 3nzb_X 3 QQKSLTLIVALTTSYGIGR-SNSLPWK-LKKEISYFKRVTSFVPTFDSFESMNVVLMGRKTWESIPLQ----FRPL-KGR 75 (206)
T ss_dssp CCSCEEEEEEEETTCEEEB-TTBCSSC-CHHHHHHHHHHHHCCCTTGGGTEEEEEEEEHHHHHHSCGG----GCSC-TTS
T ss_pred CCCEEEEEEEECCCCcEeC-CCCcCCC-ChhHHHHHHHHHccCccccccccCCEEEECchHHHhhhhc----ccCC-CCC
Confidence 4578999999999999975 8999996 35677777777765 49999999999865321 1122 233
Q ss_pred eEEEEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC-------CCCEEE
Q psy14502 212 YRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-------KINELH 284 (352)
Q Consensus 212 ~~vvv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~-------g~~~i~ 284 (352)
..+|++++....+.. .+++ + .|+.++++.|++. +.++|+
T Consensus 76 ~niVlSr~~~~~~~~------~~~v----------------------~------~sl~eal~~l~~~~~~~~~~~~~~i~ 121 (206)
T 3nzb_X 76 INVVITRNESLDLGN------GIHS----------------------A------KSLDHALELLYRTYGSESSVQINRIF 121 (206)
T ss_dssp EEEEECSSCCCCCCS------SCEE----------------------E------SSHHHHHHHHHHHSCSSSSSEEEEEE
T ss_pred eEEEEccCCCCCCCC------CEEE----------------------E------CCHHHHHHHHhccccccccCCCCcEE
Confidence 467777765432110 0111 1 2899999999985 468999
Q ss_pred EeecHHHHHHHHHcCCCcEEEEEEeceeecCCCCCCC
Q psy14502 285 IEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFT 321 (352)
Q Consensus 285 veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~g~~lf~ 321 (352)
|.||++++++||+++|+||++|++.|..+ .|.++|+
T Consensus 122 ViGG~~iy~~~L~~~l~Del~lT~i~~~~-~gd~~FP 157 (206)
T 3nzb_X 122 VIGGAQLYKAAMDHPKLDRIMATIIYKDI-HCDVFFP 157 (206)
T ss_dssp ECCCHHHHHHHHHSTTEEEEEEEEECSCC-CCSEECS
T ss_pred EECcHHHHHHHhhCCCCCEEEEEEccccc-CCCccCC
Confidence 99999999999999999999999999988 6667775
No 37
>3tq8_A Dihydrofolate reductase; oxidoreductase-oxidoreductase inhib complex; HET: NDP TOP; 1.90A {Coxiella burnetii} SCOP: c.71.1.0 PDB: 3tq9_A* 3tqa_A* 3tqb_A*
Probab=99.65 E-value=2.7e-15 Score=129.41 Aligned_cols=143 Identities=17% Similarity=0.100 Sum_probs=106.0
Q ss_pred eEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCC
Q psy14502 144 WVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRID 223 (352)
Q Consensus 144 ~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~ 223 (352)
.+.+.+|+|+||+|+ .+|+..|.- +++..++.++.. .+++||||+|++.-. + +. +....+|++++...+
T Consensus 2 ~i~li~A~s~dg~IG-~~g~lpW~l-p~Dl~~Fk~~T~-g~~vIMGRkTyesi~------~-pl-p~R~niVlSr~~~~~ 70 (178)
T 3tq8_A 2 IITLIAAMDKNRLIG-RNNELPWHL-PADLAHFKSITL-GKPIVMGRRTFDSIG------K-PL-PHRRNIVITQQKNLI 70 (178)
T ss_dssp EEEEEEEEETTCEEE-BTTBCSSCC-HHHHHHHHHHHT-TSEEEEEHHHHHHHC------S-CC-TTSEEEEECSCTTCC
T ss_pred EEEEEEEECCCCcEE-CCCCcCCcC-HHHHHHHHHhhc-CCEEEEechHHhhhh------h-cc-CCCeEEEEcCCCCcC
Confidence 378899999999996 689999964 556666666544 399999999998542 1 11 223456667665432
Q ss_pred CCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcE
Q psy14502 224 PFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDE 303 (352)
Q Consensus 224 ~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDE 303 (352)
. .|+.++ .|+.++++.|++ .++|+|.||++++++||+ ++||
T Consensus 71 ~---------------------------~~v~v~--------~sl~eal~~l~~--~~~i~viGG~~iy~~~l~--l~De 111 (178)
T 3tq8_A 71 I---------------------------EGCDIF--------YSLDDALSALTK--EPEVIIIGGARIFKEALP--KADK 111 (178)
T ss_dssp C---------------------------TTSEEE--------SSHHHHHHHTTT--CSEEEEEECHHHHHHHGG--GCSE
T ss_pred C---------------------------CCeEEE--------CCHHHHHHHhhC--CCCEEEECCHHHHHHHHH--hCCE
Confidence 1 122221 188999998886 579999999999999998 9999
Q ss_pred EEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEc
Q psy14502 304 LLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343 (352)
Q Consensus 304 i~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g 343 (352)
++|++.|+.+ +|.++|+.. +...|++++.+...
T Consensus 112 l~lT~i~~~~-~Gd~~Fp~~------~~~~w~l~~~~~~~ 144 (178)
T 3tq8_A 112 MILTIINHSF-EGDVYFPEW------NDKEWKITSQIKHE 144 (178)
T ss_dssp EEEEEESSCC-CCSEECCCC------CTTSEEEEEEEEEC
T ss_pred EEEEEccccc-cccCcCCCC------ChHHCEEEEEEecc
Confidence 9999999999 577888643 22589999988774
No 38
>1df7_A DHFR, dihydrofolate reductase; structure-based inhibitor design, folateanalogs, rossmann fold; HET: NDP MTX; 1.70A {Mycobacterium tuberculosis} SCOP: c.71.1.1 PDB: 1dg5_A* 1dg7_A* 1dg8_A* 2cig_A*
Probab=99.64 E-value=7.2e-16 Score=131.15 Aligned_cols=127 Identities=13% Similarity=0.059 Sum_probs=92.8
Q ss_pred EEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCC
Q psy14502 145 VRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDP 224 (352)
Q Consensus 145 V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~ 224 (352)
|++.+|+|+||+|+ .+|+..|.. +++..++.++.. .+++||||+|++... .+.++. +....+|++++....+
T Consensus 2 i~~i~A~s~dG~Ig-~~g~lpW~~-~~d~~~f~~~t~-~~~viMGRkTyes~~----~~~~pl-~~r~~iVlS~~~~~~~ 73 (159)
T 1df7_A 2 VGLIWAQATSGVIG-RGGDIPWRL-PEDQAHFREITM-GHTIVMGRRTWDSLP----AKVRPL-PGRRNVVLSRQADFMA 73 (159)
T ss_dssp EEEEEEEETTSEEE-BTTBCSSCC-HHHHHHHHHHHT-TSEEEEEHHHHHHSC----GGGSSC-TTSEEEEECSSTTCCC
T ss_pred EEEEEEECCCCcEe-CCCCcCCCC-hHHHHHHHHHHC-CCEEEEeChHHhhcc----cccCCC-CcCEEEEEeCCCCcCC
Confidence 68899999999996 488889975 456666666444 479999999998542 111122 2345677777643211
Q ss_pred CCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEE
Q psy14502 225 FFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDEL 304 (352)
Q Consensus 225 ~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi 304 (352)
. ++.++ . |+.++++ .++|+|.||++++++||+ |+||+
T Consensus 74 ~---------------------------~~~~~-------~-~~~~~l~------~~~i~viGG~~l~~~~l~--lvDel 110 (159)
T 1df7_A 74 S---------------------------GAEVV-------G-SLEEALT------SPETWVIGGGQVYALALP--YATRC 110 (159)
T ss_dssp T---------------------------TSEEE-------S-SHHHHTT------SSSEEECCCHHHHHHHGG--GCSEE
T ss_pred C---------------------------CEEEE-------C-CHHHHhc------CCcEEEECcHHHHHHHHH--HCCEE
Confidence 1 12111 2 6777776 578999999999999998 99999
Q ss_pred EEEEeceeec--CCCCCCCC
Q psy14502 305 LLYISPILIG--EAYNMFTL 322 (352)
Q Consensus 305 ~l~i~P~ilG--~g~~lf~~ 322 (352)
+|++.|+++| +|.++|+.
T Consensus 111 ~lt~ip~~~G~~~Gd~~Fp~ 130 (159)
T 1df7_A 111 EVTEVDIGLPREAGDALAPV 130 (159)
T ss_dssp EEEEECCCCCCCTTCEECCC
T ss_pred EEEEEeeecCCCCccEeCCC
Confidence 9999999999 89999864
No 39
>3ia4_A Dihydrofolate reductase; NADPH, methotrexate, oxidoreductase; HET: NDP MTX; 1.70A {Moritella profunda} SCOP: c.71.1.0 PDB: 3ia5_A 2zza_A*
Probab=99.63 E-value=4.8e-15 Score=126.22 Aligned_cols=143 Identities=17% Similarity=0.150 Sum_probs=104.3
Q ss_pred eEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCC
Q psy14502 144 WVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRID 223 (352)
Q Consensus 144 ~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~ 223 (352)
.+.+.+|+|+||+| +.+|+..|.- +++..++.++.. .+++||||+|++.-. + +. +....+|++++....
T Consensus 2 ~i~li~A~s~dg~I-G~~g~lpW~~-~~D~~~Fk~~t~-g~~vIMGRkTyesi~------~-pl-p~r~~iVlSr~~~~~ 70 (162)
T 3ia4_A 2 IVSMIAALANNRVI-GLDNKMPWHL-PAELQLFKRATL-GKPIVMGRNTFESIG------R-PL-PGRLNIVLSRQTDYQ 70 (162)
T ss_dssp EEEEEEEECGGGEE-EBTTBCSSCC-HHHHHHHHHHHT-TSCEEEEHHHHHHHC------S-CC-TTSCEEEECCCTTCC
T ss_pred EEEEEEEECCCCcE-ECCCCcCCCC-HhHHHHHHHHhc-CcEEEEEchHHhhhh------h-hc-CCCeEEEEcCCCCCC
Confidence 37889999999999 5799999964 556666655433 389999999998542 1 12 222346666665322
Q ss_pred CCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcE
Q psy14502 224 PFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDE 303 (352)
Q Consensus 224 ~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDE 303 (352)
+ .|+.+ + .++.++++.|++ .++|+|.||++++++||. |+||
T Consensus 71 ~---------------------------~~~~v--~------~s~~~al~~l~~--~~~i~viGG~~iy~~~l~--l~De 111 (162)
T 3ia4_A 71 P---------------------------EGVTV--V------ATLEDAVVAAGD--VEELMIIGGATIYNQCLA--AADR 111 (162)
T ss_dssp C---------------------------TTSEE--E------SSHHHHHHHHTT--CSEEEECCCHHHHHHHGG--GCSE
T ss_pred C---------------------------CCeEE--E------CCHHHHHHHhhC--CCCEEEECCHHHHHHHHH--hCCE
Confidence 1 12221 1 288999998876 579999999999999997 9999
Q ss_pred EEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEEc
Q psy14502 304 LLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKIG 343 (352)
Q Consensus 304 i~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~g 343 (352)
++|++.|+.+ +|.++|+.. +...|++++.+...
T Consensus 112 l~lT~i~~~~-~gd~~Fp~~------~~~~w~~~~~~~~~ 144 (162)
T 3ia4_A 112 LYLTHIELTT-EGDTWFPDY------EQYNWQEIEHESYA 144 (162)
T ss_dssp EEEEEECCCC-CCSEECCCG------GGSCEEEEEEEEEC
T ss_pred EEEEEccccc-cccccCCCC------ChHHCEEEEEEecc
Confidence 9999999999 677888542 23579998877663
No 40
>1j3k_A Bifunctional dihydrofolate reductase-thymidylate synthase; oxidoreductase, transferase; HET: WRA NDP UMP; 2.10A {Plasmodium falciparum} SCOP: c.71.1.1 PDB: 3dg8_A* 1j3j_A* 1j3i_A* 3dga_A*
Probab=99.60 E-value=9.1e-15 Score=134.25 Aligned_cols=159 Identities=9% Similarity=0.057 Sum_probs=112.7
Q ss_pred EEeecCCCCccccCCCCccccCCHhHHHHHHHHHhc----------------------------------cceEEEcccc
Q psy14502 147 MKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR----------------------------------SCAILTGIGT 192 (352)
Q Consensus 147 ~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~----------------------------------~Dail~G~~T 192 (352)
+.+|+|.||-|- .+|...|-.-++|.+++.+.-.. .++|||||+|
T Consensus 30 ~i~a~~~n~~IG-~~g~LPW~~lp~Dmk~Fk~~T~~~~~~~dg~ldWL~~~~~~~~~~~d~gy~~f~~~ig~~VIMGRkT 108 (280)
T 1j3k_A 30 EVFNNYTFRGLG-NKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVMGRTN 108 (280)
T ss_dssp CCCCGGGEEEEE-BTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCCEEEEEHHH
T ss_pred EEEEecCCceec-cCCcCCCcCCHHHHHHHHHHhcCCCccccCcccccccccccccccccccchhhccccCCEEEEcchH
Confidence 446799999995 68888893336677777665542 5999999999
Q ss_pred ccccCCCcccCCCCCCCCCeEEEEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHH
Q psy14502 193 VLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVI 272 (352)
Q Consensus 193 ~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l 272 (352)
++.... ++++. +....+|++++...... ..++.++ . ++.+++
T Consensus 109 yEsip~----~~~PL-p~R~nIVlSr~~~~~~~-------------------------~~~v~vv-------~-sl~eal 150 (280)
T 1j3k_A 109 WESIPK----KFKPL-SNRINVILSRTLKKEDF-------------------------DEDVYII-------N-KVEDLI 150 (280)
T ss_dssp HHHSCG----GGCSC-TTSEEEEECSSCCGGGC-------------------------CSSCEEE-------S-SHHHHH
T ss_pred hhhhcc----cccCc-CCCeEEEEeCCCccccC-------------------------CCCEEEE-------C-CHHHHH
Confidence 986521 12222 34456777776431100 0122221 2 899999
Q ss_pred HHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEE-Ec-Cc---EE
Q psy14502 273 IELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQK-IG-PD---IR 347 (352)
Q Consensus 273 ~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~-~g-~~---v~ 347 (352)
+.|++.+.++|+|.||++++++||++||+||++|++.|+.+| |.++|+.. +..+|++++.+. +. ++ .+
T Consensus 151 ~~lk~~~~~~I~ViGGa~ly~~~L~~glvDel~LT~Ip~~lg-GD~~FP~~------d~~~~~lv~~~~~~~~~g~~~~f 223 (280)
T 1j3k_A 151 VLLGKLNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTYE-CDVFFPEI------NENEYQIISVSDVYTSNNTTLDF 223 (280)
T ss_dssp HHHHHSCCSCEEECCCHHHHHHHHHTTCCSEEEEEEEEEEEC-CSEECCCC------CTTTEEEEEECCCEEETTEEEEE
T ss_pred HHHHhCCCCcEEEECCHHHHHHHhcCccCCEEEEEEeccccC-CceeCCCC------ChhhcEEEEEEeeccCCCceEEE
Confidence 999998889999999999999999999999999999999999 66788643 246788888765 43 44 34
Q ss_pred EEEE
Q psy14502 348 ILAR 351 (352)
Q Consensus 348 l~y~ 351 (352)
++|+
T Consensus 224 ~~Y~ 227 (280)
T 1j3k_A 224 IIYK 227 (280)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5664
No 41
>3dau_A Dihydrofolate reductase; oxidoreductase, pseudo-rossmann fold, adenine nucleotide BIN domain, antibiotic resistance, methotrexate resistance; HET: MTX NAP; 1.50A {Escherichia coli} SCOP: c.71.1.1 PDB: 1ddr_A* 1dds_A* 3k74_A 1ra9_A* 1dre_A* 1drh_A* 1dyi_A* 1dyh_A* 1jol_A* 1jom_A* 1ra1_A* 1dyj_A* 1ra3_A* 1ra8_A* 1ra2_A* 1rb2_A* 1rb3_A* 1rc4_A* 1rd7_A* 1re7_A* ...
Probab=99.58 E-value=1.2e-14 Score=123.17 Aligned_cols=140 Identities=11% Similarity=0.001 Sum_probs=102.0
Q ss_pred EEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCC
Q psy14502 145 VRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDP 224 (352)
Q Consensus 145 V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~ 224 (352)
+.+.+|+|+||+|+ .+|+..|.- +++..++.++-.. +++||||+|++.-. + +. +....+|++++. .+.
T Consensus 2 i~li~A~s~~g~IG-~~g~lpW~l-~~D~~~Fk~~t~~-~~vIMGRkT~esi~------~-pl-p~r~~iVlSr~~-~~~ 69 (159)
T 3dau_A 2 ISLIAALAVDRVIG-MENAMPWNL-PADLAWFKRNTLN-KPVIMGRHTWESIG------R-PL-PGRKNIILSSQP-GTD 69 (159)
T ss_dssp EEEEEEECGGGEEE-BTTBCSSCC-HHHHHHHHHHHTT-SCEEEEHHHHHHHC------S-CC-TTSCEEEECSSC-CSC
T ss_pred EEEEEEECCCCeEE-CCCCcCcCC-hhHHHHHHHHhcC-CeEEEechHHhhcc------c-cc-CCCEEEEECCCC-CCC
Confidence 67889999999996 699999964 5666666665433 79999999998541 1 22 223345666654 211
Q ss_pred CCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEE
Q psy14502 225 FFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDEL 304 (352)
Q Consensus 225 ~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi 304 (352)
.|+.+ + .++.++++.++ +.++|+|.||++++++||. ++||+
T Consensus 70 ---------------------------~~~~v--~------~s~~~al~~~~--~~~~i~iiGG~~iy~~~l~--~~D~l 110 (159)
T 3dau_A 70 ---------------------------DRVTW--V------KSVDEAIAACG--DVPEIMVIGGGRVYEQFLP--KAQKL 110 (159)
T ss_dssp ---------------------------TTSEE--E------SSHHHHHHTTC--SCSCEEECCCHHHHHHHGG--GCSEE
T ss_pred ---------------------------CCeEE--E------CCHHHHHHHhc--CCCCEEEECCHHHHHHHHh--hCCEE
Confidence 12221 1 27888888765 5689999999999999997 89999
Q ss_pred EEEEeceeecCCCCCCCCCCCCCcccccCceEeEEEEE
Q psy14502 305 LLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQKI 342 (352)
Q Consensus 305 ~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~~~ 342 (352)
+|++.|+.+| |.++|+.. +...|++++.+..
T Consensus 111 ~lT~i~~~~~-Gd~~Fp~~------~~~~~~~~~~~~~ 141 (159)
T 3dau_A 111 YLTHIDAEVE-GDTHFPDY------EPDDWESVFSEFH 141 (159)
T ss_dssp EEEEECCCCC-CSEECCCC------CGGGEEEEEEEEE
T ss_pred EEEEcccccC-ccccCCCC------ChHHCEEEEEEec
Confidence 9999999998 77888643 2357888887766
No 42
>3nrr_A Dihydrofolate reductase-thymidylate synthase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, niaid, DHFR; HET: NAP D16 UMP; 1.80A {Babesia bovis} PDB: 3kjr_A* 3i3r_A* 3k2h_A*
Probab=99.56 E-value=2.8e-14 Score=140.87 Aligned_cols=149 Identities=15% Similarity=0.130 Sum_probs=111.3
Q ss_pred CcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhc------------cceEEEccccccccCCCcccCCCCCC
Q psy14502 141 GIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR------------SCAILTGIGTVLKDNPRLNVRSIKTS 208 (352)
Q Consensus 141 ~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~------------~Dail~G~~T~~~d~p~l~~r~~~~~ 208 (352)
..+.+++.+|+|+||+| +.+|+..|..-+++..++.++... .|+|||||+|++.... ...+.
T Consensus 11 ~MrkI~livA~SldG~I-G~dg~LpW~~lp~Dlk~Fk~~T~g~p~~~~~~~~~~i~aVIMGRKTyESip~----~~rPL- 84 (515)
T 3nrr_A 11 GCGDLTIFVAVALNKVI-GHKNQIPWPHITHDFRFLRNGTTYIPPEVLSKNPDIQNVVIFGRKTYESIPK----ASLPL- 84 (515)
T ss_dssp TCCCEEEEEEECTTSEE-EBTTBCSSCCCHHHHHHHHHHHHCCCHHHHHHSTTCCEEEEEEHHHHHTSCG----GGCSC-
T ss_pred CCceEEEEEEECCCCcC-CCCCCCCCcCCchHHHHHHHHHcCCCccccccccccCCEEEEcchHHHhhhh----ccCCC-
Confidence 35679999999999999 899999998667777777777654 5999999999985421 11121
Q ss_pred CCCeEEEEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC-CCCEEEEee
Q psy14502 209 HQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEA 287 (352)
Q Consensus 209 ~~p~~vvv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~-g~~~i~veG 287 (352)
+....+|++++...++ .++| + .|+.++++.|++. +.++|+|.|
T Consensus 85 p~R~nIVlSrt~~~~~--------~v~V----------------------~------~sl~eal~~Lk~~~~~~~I~VIG 128 (515)
T 3nrr_A 85 KNRINVILSRTVKEVP--------GCLV----------------------Y------EDLSTAIRDLRANVPHNKIFILG 128 (515)
T ss_dssp TTEEEEEECSSCCCCT--------TEEE----------------------E------SSHHHHHHHHHHHSCCSCEEECC
T ss_pred CCCeEEEECCCCCCCC--------CEEE----------------------E------CCHHHHHHHHhhccCCCCEEEEC
Confidence 2234567776653111 0111 1 3899999999986 789999999
Q ss_pred cHHHHHHHHHcCCCcEEEEEEeceeecCCCCCCCCCCCCCcccccCceEeEE
Q psy14502 288 GYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEI 339 (352)
Q Consensus 288 G~~l~~~fl~~gLvDEi~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~ 339 (352)
|++++++||+++|+||++|++.|..+ +|.++|+.. ...|++++.
T Consensus 129 Gg~Iy~~~L~~~liDel~LT~I~~~~-~GDtfFP~~-------~~~w~~v~~ 172 (515)
T 3nrr_A 129 GSFLYKEVLDNGLCDKIYLTRLNKEY-PGDTYFPDI-------PDTFEITAI 172 (515)
T ss_dssp CHHHHHHHHHTTCEEEEEEEEESSCC-CCSEECCCC-------CTTEEEEEE
T ss_pred CHHHHHHHhhCCCCCEEEEEEecCcc-CCCccCCCc-------hhhCEEEEE
Confidence 99999999999999999999999988 566777532 246777664
No 43
>3hj3_A Chain A, crystal structure of DHFR; TS, enzyme, crossover, non-active site, oxidoreductase; HET: UMP CB3 MTX NDP; 2.70A {Cryptosporidium hominis} PDB: 1qzf_A* 1sej_A* 3dl5_A* 3dl6_A* 2oip_A*
Probab=99.52 E-value=3.4e-14 Score=140.37 Aligned_cols=150 Identities=17% Similarity=0.068 Sum_probs=108.8
Q ss_pred CcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhc------cceEEEccccccccCCCcccCCCCCCCCCeEE
Q psy14502 141 GIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR------SCAILTGIGTVLKDNPRLNVRSIKTSHQPYRI 214 (352)
Q Consensus 141 ~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~------~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~v 214 (352)
..|.+++.+|+|+||+|. .+|+..|.- +++..++.++... .|++||||+|++.. +. | +. +....+
T Consensus 3 ~MrkI~lIvA~SldG~IG-~dg~LpW~l-peDl~~Fk~~T~g~~~~~k~daVIMGRKTyEsi-g~----~-PL-p~R~nI 73 (521)
T 3hj3_A 3 EKNVSIVVAASVLSSGIG-INGQLPWSI-SEDLKFFSKITNNKCDSNKKNALIMGRKTWDSI-GR----R-PL-KNRIIV 73 (521)
T ss_dssp CCCEEEEEEEETTTCEEE-BTTBCSCCC-HHHHHHHHHHHHCCSSTTSEEEEEEEHHHHGGG-TT----C-CC-TTSEEE
T ss_pred CCceEEEEEEECCCCcEE-CCCCCCCCC-HHHHHHHHHHHcCCCccccCCEEEEcccHHhhc-Cc----c-cC-CCCeEE
Confidence 357899999999999995 688899964 5677777666544 38999999999865 11 1 22 233457
Q ss_pred EEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC-CCCEEEEeecHHHHH
Q psy14502 215 VIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAGYQLNT 293 (352)
Q Consensus 215 vv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~-g~~~i~veGG~~l~~ 293 (352)
|++++....... .-++| . .|+.++++.|++. |.++|+|.||+++++
T Consensus 74 VlSrt~~~~~~~-----~~~~V-~---------------------------~sl~eal~~lk~~~g~~~I~VIGGa~ly~ 120 (521)
T 3hj3_A 74 VISSSLPQDEAD-----PNVVV-F---------------------------RNLEDSIENLMNDDSIENIFVCGGESIYR 120 (521)
T ss_dssp EECSSSCCCCSC-----SSEEE-E---------------------------SSTTTTTTSSSSCTTEEEEEEEECHHHHH
T ss_pred EEcCCCcccCCC-----CCEEE-E---------------------------CCHHHHHHHHhhccCCCCEEEEeCHHHHH
Confidence 778776532110 01111 1 2677888888876 568999999999999
Q ss_pred HHHHcCCCcEEEEEEeceeecCCCCCCCCCCCCCcccccCceEeEE
Q psy14502 294 ALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEI 339 (352)
Q Consensus 294 ~fl~~gLvDEi~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~ 339 (352)
+||+++|+||++|++.|++.++|.++|+.. +. . |++++.
T Consensus 121 ~~L~~~liDel~LT~Ipv~~~~GDtfFP~~-----d~-~-w~lv~~ 159 (521)
T 3hj3_A 121 DALKDNFVDRIYLTRVALEDIEFDTYFPEI-----PE-T-FLPVYM 159 (521)
T ss_dssp HHHHTTCCSEEEEEEECCCSSCCSEECCCC-----CT-T-EEEEEE
T ss_pred HHhcCCCCCEEEEEEEeccCcCcCccCCCC-----CC-C-cEEEEe
Confidence 999999999999999999656787888643 22 2 777664
No 44
>2bl9_A Dihydrofolate reductase-thymidylate synthase; plamodium vivax, pyrimethamine, malaria, drug resistance, oxidoreductase; HET: NDP CP6; 1.9A {Plasmodium vivax} PDB: 2blb_A* 2blc_A* 2bla_A*
Probab=99.52 E-value=1.7e-13 Score=123.32 Aligned_cols=146 Identities=8% Similarity=0.031 Sum_probs=106.6
Q ss_pred eecCCCCccccCCCCccccCCHhHHHHHHHHHhc--------------------------------------------cc
Q psy14502 149 IASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR--------------------------------------------SC 184 (352)
Q Consensus 149 ~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~--------------------------------------------~D 184 (352)
+|+|.+|-| +.+|...|-.-++|.+++.++-.. .+
T Consensus 31 ~~~~~~~~I-G~~g~LPW~~l~~Dm~~Fk~~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~f~~~~g~ 109 (238)
T 2bl9_A 31 FSPRTFRGL-GNKGTLPWKCNSVDMKYFSSVTTYVDESKYEKLKWKRERYLRMEASQGGGDNTSGGDNTHGGDNADKLQN 109 (238)
T ss_dssp TCSCSSCEE-EBTTBCSSSCCHHHHHHHHHHHHCCCGGGHHHHHHHHHHHHHHHC---------------------CCCE
T ss_pred EEecCCCee-cCCCcCCCcCCHHHHHHHHHHhcccccccccccCCCcceecccccccCCcccccccccccccccccccCC
Confidence 468889988 578888995557788888776652 48
Q ss_pred eEEEccccccccCCCcccCCCCCCCCCeEEEEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCC
Q psy14502 185 AILTGIGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLG 264 (352)
Q Consensus 185 ail~G~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~ 264 (352)
+|||||+|++.... .+++. +....+|++++...... ..++.++
T Consensus 110 ~VIMGRkTyEsi~~----~~~PL-p~R~nIVlSr~~~~~~~-------------------------~~~v~v~------- 152 (238)
T 2bl9_A 110 VVVMGRSSWESIPK----QYKPL-PNRINVVLSKTLTKEDV-------------------------KEKVFII------- 152 (238)
T ss_dssp EEEEEHHHHHTSCG----GGCSC-TTEEEEEECSSCCTTTC-------------------------CSSCEEE-------
T ss_pred EEEEchhHhhhhcc----cccCc-CCCEEEEEeCCCccccC-------------------------CCCEEEE-------
Confidence 99999999985421 12222 23456777776432100 0122211
Q ss_pred CCCHHHHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEEEEEeceeecCCCCCCCCCCCCCcccccCceEeEEE
Q psy14502 265 KVDLQAVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEIQ 340 (352)
Q Consensus 265 ~~dl~~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~~ 340 (352)
. ++.++++.|++.+.++|+|.||++++++||+++|+||++|++.|+.+| |.++|+.. +..+|++++.+
T Consensus 153 ~-sl~eal~~lk~~~~~~I~ViGGa~Iy~~~L~~glvDel~lT~ip~~~g-GD~~FP~~------d~~~~~lv~~~ 220 (238)
T 2bl9_A 153 D-SIDDLLLLLKKLKYYKCFIIGGAQVYRECLSRNLIKQIYFTRINGAYP-CDVFFPEF------DESEFRVTSVS 220 (238)
T ss_dssp S-CHHHHHHHHHTCCCSCEEEEECHHHHHHHHHTTCCSEEEEEEEEEEEC-CSEECCCC------CGGGEEEEEEC
T ss_pred C-CHHHHHHHHHhCCCCCEEEECcHHHHHHHhcccCCCEEEEEEeccccC-CceeCCCC------CchhcEEEEEE
Confidence 2 899999999988889999999999999999999999999999999999 66788643 23578887764
No 45
>3rg9_A Bifunctional dihydrofolate reductase-thymidylate; oxidoreductase, oxidoreductase-oxidoreductase inhibitor complex; HET: NDP WRA; 2.00A {Trypanosoma brucei rhodesiense} PDB: 3qfx_A*
Probab=99.42 E-value=3.8e-13 Score=121.17 Aligned_cols=153 Identities=12% Similarity=0.043 Sum_probs=103.6
Q ss_pred cCcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhcc------------ceEEEccccccccCCCcccCCCCC
Q psy14502 140 RGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRARS------------CAILTGIGTVLKDNPRLNVRSIKT 207 (352)
Q Consensus 140 ~~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~~------------Dail~G~~T~~~d~p~l~~r~~~~ 207 (352)
...+.+++.+|+|.||.| +.+|...|. -++|..++.++-... ++|||||+|++.-... +.+
T Consensus 24 ~~mr~i~lIvA~s~ng~I-G~~g~LPW~-lp~Dm~~Fk~~T~g~p~~~~~~~~~~~naVIMGRKT~ESip~~----~rP- 96 (240)
T 3rg9_A 24 PPLRPFSVVVASDEKGGI-GDGGTIPWE-IPEDMQYFRRVTTNLRGKNVKPSPSKRNAVVMGRKTWDSLPPK----FRP- 96 (240)
T ss_dssp CCCCCEEEEEEEETTCEE-ESSSSCSCC-CHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHHSCGG----GSS-
T ss_pred CCCCeEEEEEEECCCCcE-ECCCCcCCC-CHHHHHHHHHHHcCCcccccccccccCcEEEEehhHHhhhhhh----ccC-
Confidence 345679999999999999 589999996 567777887776664 8999999999854221 112
Q ss_pred CCCCeEEEEcCCCCCC-CCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCC----CCE
Q psy14502 208 SHQPYRIVIDSYLRID-PFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRK----INE 282 (352)
Q Consensus 208 ~~~p~~vvv~~~~~~~-~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g----~~~ 282 (352)
-+....||++++.... +...+ ............+ ++++ -++.++++.|++.+ .++
T Consensus 97 Lp~R~nIVlSr~~~~~~~~~~~------------~~~~~~~~~~~~~--v~v~------~sl~eal~~l~~~~~~~~~~~ 156 (240)
T 3rg9_A 97 LSNRLNVVLSRSATKEQLLAGI------------PDPIKRAEAANDV--VAVN------GGLEDALRMLVSKEHTSSIET 156 (240)
T ss_dssp CTTSEEEEECSSCCHHHHHTTC------------SSHHHHHHHGGGE--EEES------SCHHHHHHHTTSHHHHHHEEE
T ss_pred CCCCeEEEEccCcccccccccc------------cccccccccCCCC--EEEE------CCHHHHHHHHhccccccCCCe
Confidence 1344567777765321 00000 0000000001122 2222 38999999998653 789
Q ss_pred EEEeecHHHHHHHHHcC---CCcEEEEEEec-eeecCCCCCC
Q psy14502 283 LHIEAGYQLNTALILEG---CVDELLLYISP-ILIGEAYNMF 320 (352)
Q Consensus 283 i~veGG~~l~~~fl~~g---LvDEi~l~i~P-~ilG~g~~lf 320 (352)
|+|.||+++..+||+++ ++|+++|+..| ..+ .+..+|
T Consensus 157 I~VIGGa~IY~~~L~~~~~~l~D~l~lT~I~p~~~-egDtfF 197 (240)
T 3rg9_A 157 VFCIGGGTIYKQALCAPCVNVLQAIHRTVVRPASN-SCSVFF 197 (240)
T ss_dssp EEECCCHHHHHHHTSTTGGGGEEEEEEEEEESCCS-SCCEEC
T ss_pred EEEECCHHHHHHHHhcCccccCCEEEEEEEcCCCc-Ccceec
Confidence 99999999999999999 99999999777 777 555666
No 46
>1juv_A DHFR, dihydrofolate reductase; complexed with NADPH, oxidoreductase; HET: NDP; 1.70A {Enterobacteria phage T4} SCOP: c.71.1.1
Probab=99.34 E-value=8.9e-13 Score=115.46 Aligned_cols=149 Identities=11% Similarity=0.038 Sum_probs=94.1
Q ss_pred EEEEeecCC--------CCccccCCCCccc-cCCHhHHHHHHHHHhccceEEEccccccccCCCcccCCCCCCCCCeEEE
Q psy14502 145 VRMKIASSL--------DNKTSLYNNSSQW-ITSKESRNDSHIWRARSCAILTGIGTVLKDNPRLNVRSIKTSHQPYRIV 215 (352)
Q Consensus 145 V~~~~a~Sl--------DG~ia~~~g~~~~-i~~~~~~~~~~~lr~~~Dail~G~~T~~~d~p~l~~r~~~~~~~p~~vv 215 (352)
+++.+|+|+ ||+|. .+|+..| .- +++..++.++.. .+++||||+|++.... +. +....+|
T Consensus 2 i~li~A~s~~~~~~~~~dg~IG-~~g~lpW~~l-~~D~~~F~~~t~-~~~vIMGRkTyesi~~-------pl-p~R~~iV 70 (193)
T 1juv_A 2 IKLVFRYSPTKTVDGFNELAFG-LGDGLPWGRV-KKDLQNFKARTE-GTIMIMGAKTFQSLPT-------LL-PGRSHIV 70 (193)
T ss_dssp EEEEEEEEEEECTTSCEEEEEE-BTTBCTTCCC-HHHHHHHHHHHT-TSEEEEEHHHHHTCSS-------CC-TTSCEEE
T ss_pred EEEEEEEcCccccCCCcCCeEC-CCCCCCCcCC-hHHHHHHHHHhc-CCEEEEchhHhhhccc-------cc-CCCcEEE
Confidence 678999999 99996 7899999 42 456566655544 4999999999986421 11 2334667
Q ss_pred EcCCCC-CCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHHHHHH
Q psy14502 216 IDSYLR-IDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQLNTA 294 (352)
Q Consensus 216 v~~~~~-~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~l~~~ 294 (352)
++++.+ .+... ....+.++.+ .+..-.+...+. ++ . .++.++++.|++ +.++|+|.||++++++
T Consensus 71 lSr~~~~~~~~~---~~~~~~~~~~---~~~a~~~~~~~~-~v-~------~sl~eal~~lk~-~~~~I~ViGG~~ly~~ 135 (193)
T 1juv_A 71 VCDLARDYPVTK---DGDLAHFYIT---WEQYITYISGGE-IQ-V------SSPNAPFETMLD-QNSKVSVIGGPALLYA 135 (193)
T ss_dssp ECCTTSCCCCCT---TCCCCSEEEC---HHHHHHHHTTCC-EE-E------ECTTSSCEEEEC-TTSCEEEEECHHHHHH
T ss_pred EcCCCccccccc---ccccceeecc---cccccccccccc-ee-c------CCHHHHHHHHHc-CCCcEEEECcHHHHHH
Confidence 777642 22100 0000001000 000000111111 11 1 255666666665 6689999999999999
Q ss_pred HHHcCCCcEEEEEEec-eeecCCCCCCC
Q psy14502 295 LILEGCVDELLLYISP-ILIGEAYNMFT 321 (352)
Q Consensus 295 fl~~gLvDEi~l~i~P-~ilG~g~~lf~ 321 (352)
|| +|+||++|++.| +..|+|.++|+
T Consensus 136 ~L--~lvDel~lT~ip~~~~~~gd~~F~ 161 (193)
T 1juv_A 136 AL--PYADEVVVSRIVKRHRVNSTVQLD 161 (193)
T ss_dssp HG--GGCSEEEEEEEEESSCCCCSEEEC
T ss_pred HH--HhCCEEEEEEeccccccCCCeecC
Confidence 99 699999999999 78899988885
No 47
>1uwz_A Cytidine deaminase; CDD, tetramer, zinc binding, pyrimidine metabolism, salvage, hydrolase; HET: THU; 1.99A {Bacillus subtilis} SCOP: c.97.1.1 PDB: 1ux0_A* 1jtk_A* 1ux1_A*
Probab=99.24 E-value=2.4e-11 Score=100.15 Aligned_cols=80 Identities=23% Similarity=0.353 Sum_probs=67.8
Q ss_pred CHHHHHHHhhcCCC-CCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCC-CCCCeEEEEe----CC
Q psy14502 1 MTLALQQAKLSINS-SPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGY-DVYNSTVYIT----LE 69 (352)
Q Consensus 1 m~~a~~~a~~~~~~-~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~-~~~~~~ly~t----~e 69 (352)
|+.|++.|+++... +..| |||+|+. ||+|+ +|+|... .+.|||+.||.++.+.|. .+..+++|++ ++
T Consensus 7 ~~~A~~aa~~ayapYs~~~-VGAal~~~dG~i~-~G~Nvena~~~~t~cAE~~Ai~~A~~~G~~~~~~~~l~~~~~~~~~ 84 (136)
T 1uwz_A 7 ITEALKARDMAYAPYSKFQ-VGAALLTKDGKVY-RGCNIENAAYSMCNCAEATALFKAVSEGDTEFQMLAVAADTPGPVS 84 (136)
T ss_dssp HHHHHHHHTTCBCTTTCCC-EEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHHTCCCEEEEEEEESCSSSCC
T ss_pred HHHHHHHHHhccCccCCCC-EEEEEEeCCCeEE-EEeCcccCCCCCccCHHHHHHHHHHHCCCCCeEEEEEEeCCCCccC
Confidence 56788888887555 4445 9999997 99999 7999764 479999999999988765 5789999996 99
Q ss_pred CCCCCCCCcchHHHHHHhC
Q psy14502 70 PCSYFGYTPPCTEALIKSG 88 (352)
Q Consensus 70 PC~~~g~t~~C~~~i~~~g 88 (352)
|| +||..+|.+.+
T Consensus 85 PC------g~Crq~l~e~~ 97 (136)
T 1uwz_A 85 PC------GACRQVISELC 97 (136)
T ss_dssp CC------HHHHHHHHHHS
T ss_pred HH------HHHHHHHHHcC
Confidence 99 59999999997
No 48
>2fr5_A Cytidine deaminase; tetrahydrouridine, protein-inhibitor COM alternate conformation of Arg68, hydrolase; HET: TYU; 1.48A {Mus musculus} SCOP: c.97.1.1 PDB: 1zab_A* 2fr6_A* 1mq0_A*
Probab=99.10 E-value=3.1e-10 Score=94.38 Aligned_cols=81 Identities=22% Similarity=0.371 Sum_probs=67.1
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCC-CCCCeEEEEe-----CC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGY-DVYNSTVYIT-----LE 69 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~-~~~~~~ly~t-----~e 69 (352)
|+.|++.++++.....+.+|||+|+. ||+|+ +|+|-.. .+.|||++||.++.+.|. .++..++|++ ++
T Consensus 19 ~~~A~~a~~~ayapys~f~VGAal~~~dG~i~-~G~NvEnas~~~t~cAE~~Ai~~A~~~G~~~l~~i~v~~~~~~~~~~ 97 (146)
T 2fr5_A 19 LLSSREAKKSAYCPYSRFPVGAALLTGDGRIF-SGCNIENACYPLGVCAERTAIQKAISEGYKDFRAIAISSDLQEEFIS 97 (146)
T ss_dssp HHHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCSSSCCC
T ss_pred HHHHHHHHHhcCCCcCCCCEEEEEEeCCCcEE-EEEeccccCCCCCcCHHHHHHHHHHhCCCCceEEEEEEeCCCCcccC
Confidence 46677777777554345559999996 99999 6999764 478999999999998865 5789999998 99
Q ss_pred CCCCCCCCcchHHHHHHhC
Q psy14502 70 PCSYFGYTPPCTEALIKSG 88 (352)
Q Consensus 70 PC~~~g~t~~C~~~i~~~g 88 (352)
|| +||...|.+.+
T Consensus 98 PC------G~Crq~l~E~~ 110 (146)
T 2fr5_A 98 PC------GACRQVMREFG 110 (146)
T ss_dssp CC------HHHHHHHHHTC
T ss_pred CC------HHHHHHHHHhC
Confidence 99 69999999997
No 49
>2z3g_A Blasticidin-S deaminase; hydrolase, cytidine deaminase family, zinc, tetramer; HET: TRE; 1.50A {Aspergillus terreus} SCOP: c.97.1.1 PDB: 1wn6_A* 1wn5_A* 2z3h_A* 2z3j_A 2z3i_A*
Probab=99.09 E-value=4.6e-10 Score=91.76 Aligned_cols=82 Identities=23% Similarity=0.246 Sum_probs=68.0
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCC--CCCCcHHHHHHHHHHhcCC-CCCCeEEEE-----eCCCC
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKS--PGGNHAEIDALLNAAAQGY-DVYNSTVYI-----TLEPC 71 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~--~~~~HaE~~a~~~~~~~~~-~~~~~~ly~-----t~ePC 71 (352)
|+.|++.++++...+..| |||+|+. ||+|+ +|.|-. ..+.|||+.||.++.+.|. .++..++|+ +++||
T Consensus 11 ~~~A~~a~~~ay~~s~f~-VGAal~~~dG~i~-~G~NvE~~~~t~cAE~~Ai~~A~~~G~~~~~~i~vv~~~~~~~~~PC 88 (130)
T 2z3g_A 11 IERATATINSIPISEDYS-VASAALSSDGRIF-TGVNVYHFTGGPCAELVVLGTAAAAAAGNLTCIVAIGNENRGILSPC 88 (130)
T ss_dssp HHHHHHHHHHSCCCSSSC-EEEEEEETTSCEE-EEECCCCTTTCCCHHHHHHHHHHHTTCCCEEEEEEEETTTTEEECCC
T ss_pred HHHHHHHHHhhCCCCCCC-EEEEEEecCCeEE-EEeccccCCcccCHHHHHHHHHHHcCCCceEEEEEEECCCCCccCcC
Confidence 577889998885444444 9999996 99998 599977 3589999999999998864 678899998 79999
Q ss_pred CCCCCCcchHHHHHHhCCc
Q psy14502 72 SYFGYTPPCTEALIKSGIK 90 (352)
Q Consensus 72 ~~~g~t~~C~~~i~~~gi~ 90 (352)
+||...|.+.+-.
T Consensus 89 ------G~Crq~l~e~~~~ 101 (130)
T 2z3g_A 89 ------GRCRQVLLDLHPG 101 (130)
T ss_dssp ------HHHHHHHHHHCTT
T ss_pred ------HHHHHHHHHhCCC
Confidence 5999999998733
No 50
>3irm_A Bifunctional dihydrofolate reductase-thymidylate; DHFR-TS antifolate complex, methyltransfe multifunctional enzyme, NADP; HET: 1CY; 2.10A {Trypanosoma cruzi} PDB: 3inv_A* 3irn_A* 3iro_A* 2h2q_A* 3cl9_A* 3clb_A* 3hbb_A* 3kjs_A*
Probab=99.03 E-value=1.2e-09 Score=108.01 Aligned_cols=155 Identities=15% Similarity=0.067 Sum_probs=102.8
Q ss_pred ccCcceEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhc------c------ceEEEccccccccCCCcccCCCC
Q psy14502 139 QRGIPWVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR------S------CAILTGIGTVLKDNPRLNVRSIK 206 (352)
Q Consensus 139 ~~~rP~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~------~------Dail~G~~T~~~d~p~l~~r~~~ 206 (352)
....|.+.+.+|+|.||.|. .+|...|- -++|..++.++-.. . ++|||||+|++.-.. +..+
T Consensus 17 ~~~~~~islIvA~~~ng~IG-~~g~LPW~-Lp~Dmk~Fk~~T~g~~~~~~~~~~~~~naVIMGRKT~ESIP~----k~rP 90 (521)
T 3irm_A 17 RLALRAFSLVVAVDEHGGIG-DGRSIPWN-VPEDMKFFRDLTTKLRGKNVKPSPAKRNAVVMGRKTWDSIPP----KFRP 90 (521)
T ss_dssp SCSSCCEEEEEEEETTSEEE-SSSCCCCC-CHHHHHHHHHHHHCCSSSSCCCBTTBEEEEEEEHHHHHTSCG----GGCS
T ss_pred ccCCceEEEEEEECCCCcee-cCCCcCCC-ChhHHHHHHHHhcCCCcccccCcccccceEEEecchhhCccc----ccCC
Confidence 44568899999999999996 78889994 56788888877655 2 799999999984321 1111
Q ss_pred CCCCCeEEEEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC----CCCE
Q psy14502 207 TSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR----KINE 282 (352)
Q Consensus 207 ~~~~p~~vvv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~----g~~~ 282 (352)
. +....||++++..... ...+. ............+ ++++ -++.++++.|++. +.++
T Consensus 91 L-P~R~NIVLSR~~~~~~---~~~~~--------p~~~~~~~~~~~~--v~V~------~SleeAL~~l~~~~~~~~~~~ 150 (521)
T 3irm_A 91 L-PGRLNVVLSSTLTTQH---LLDGL--------PDEEKRNLHADSI--VAVN------GGLEQALRLLASPNYTPSIET 150 (521)
T ss_dssp C-TTEEEEEECSSCCHHH---HHHTS--------SSHHHHHHHGGGE--EEES------SCHHHHHHHHTSTTTTTTEEE
T ss_pred C-CCCeEEEEeccccccc---ccccc--------cccccccccCCCC--eEEE------CCHHHHHHHHhccccccCCCe
Confidence 1 2344577777653210 00000 0000000001122 2233 3899999999876 4789
Q ss_pred EEEeecHHHHHHHHHcC---CCcEEEEEEec-eeecCCCCCC
Q psy14502 283 LHIEAGYQLNTALILEG---CVDELLLYISP-ILIGEAYNMF 320 (352)
Q Consensus 283 i~veGG~~l~~~fl~~g---LvDEi~l~i~P-~ilG~g~~lf 320 (352)
|+|.||+++..+||+++ ++|+++|+..| ... .+-.+|
T Consensus 151 VfVIGGa~IY~~~L~~~~~~l~D~l~lT~I~p~~~-egDtfF 191 (521)
T 3irm_A 151 VYCIGGGSVYAEALRPPCVHLLQAIYRTTIRASES-SCSVFF 191 (521)
T ss_dssp EEECCCHHHHHHHTSTTGGGGEEEEEEEEECCSSC-CCSEEC
T ss_pred EEEEcCHHHHHHHHhCCccccCCEEEEEEecCCCc-ccceec
Confidence 99999999999999999 99999999888 654 344555
No 51
>3qg2_A Bifunctional dihydrofolate reductase-thymidylate; pyrimethamine, antifolate resistance, oxidoreductase, transferase; HET: CP6 NDP UMP; 2.30A {Plasmodium falciparum} PDB: 3jsu_A* 4dp3_A* 4dph_A* 3qgt_A* 3um8_A* 4dpd_A* 3um5_A* 3um6_A*
Probab=98.96 E-value=4.1e-09 Score=105.22 Aligned_cols=150 Identities=9% Similarity=0.048 Sum_probs=104.6
Q ss_pred eEEEEeecCCCCccccCCCCccccCCHhHHHHHHHHHhc----------------------------------cceEEEc
Q psy14502 144 WVRMKIASSLDNKTSLYNNSSQWITSKESRNDSHIWRAR----------------------------------SCAILTG 189 (352)
Q Consensus 144 ~V~~~~a~SlDG~ia~~~g~~~~i~~~~~~~~~~~lr~~----------------------------------~Dail~G 189 (352)
.+.+..|++-+|-|- .+|...|-.-++|..++.++-.. .++||||
T Consensus 27 ~i~lIvA~~~n~gIG-~~g~LPW~~Lp~Dlk~Fk~~T~~~~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~VIMG 105 (608)
T 3qg2_A 27 KKNEVFNNYTFRGLG-NKGVLPWKCISLDMKYFRAVTTYVNESKYEKLKYKRCKYLNKETVDNVNDMPNSKKLQNVVVMG 105 (608)
T ss_dssp CCCCCCCGGGEEEEE-BTTBCSSSCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTCCC----------CCCCEEEEEE
T ss_pred eEEEEEEeCCCCccc-cCCcCCCCCCHHHHHHHHHHhcCCCccccccccccccchhhcccccCccccccccCcCCEEEEc
Confidence 366778888898885 67888884456777777666541 1799999
Q ss_pred cccccccCCCcccCCCCCCCCCeEEEEcCCCCCCCCCccccCCceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHH
Q psy14502 190 IGTVLKDNPRLNVRSIKTSHQPYRIVIDSYLRIDPFFRVLKGGGSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQ 269 (352)
Q Consensus 190 ~~T~~~d~p~l~~r~~~~~~~p~~vvv~~~~~~~~~~~~~~~~~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~ 269 (352)
|+|++.-.. ...+. +...-||++++...... ..++.+ + -++.
T Consensus 106 RKTfESIp~----~frPL-PgR~NIVLSR~~~~~~~-------------------------~~gv~V--~------~sle 147 (608)
T 3qg2_A 106 RTNWESIPK----KFKPL-SNRINVILSRTLKKEDF-------------------------DEDVYI--I------NKVE 147 (608)
T ss_dssp HHHHHHSCG----GGCSC-TTEEEEEECSSCCGGGC-------------------------CSSCEE--E------SSHH
T ss_pred hHHHHhhcc----ccCCC-CCCeEEEECCCCccccC-------------------------CCCEEE--E------CCHH
Confidence 999984421 11121 23345777776431110 012221 1 2899
Q ss_pred HHHHHHHhCCCCEEEEeecHHHHHHHHHcCCCcEEEEEEeceeecCCCCCCCCCCCCCcccccCceEeEE
Q psy14502 270 AVIIELGKRKINELHIEAGYQLNTALILEGCVDELLLYISPILIGEAYNMFTLPPHYSLDKKIKLKFHEI 339 (352)
Q Consensus 270 ~~l~~L~~~g~~~i~veGG~~l~~~fl~~gLvDEi~l~i~P~ilG~g~~lf~~~~~~~~~~~~~l~l~~~ 339 (352)
++++.|++.+.++|+|.||+++..+||.++++|+++|+..|..+ .|.++|+.. +...|++++.
T Consensus 148 eal~~lk~~~~~~IfVIGGa~IY~~~L~~~laDeL~LT~I~~~~-eGDtfFP~i------d~~~w~~~~~ 210 (608)
T 3qg2_A 148 DLIVLLGKLNYYKCFILGGSVVYQEFLEKKLIKKIYFTRINSTY-ECDVFFPEI------NENEYQIISV 210 (608)
T ss_dssp HHHHHHHHSCCSCEEECCCHHHHHHHHHTTCCSEEEEEEEEEEE-CCSEECCCC------CTTTEEEEEE
T ss_pred HHHHHHhcCCCCeEEEECCHHHHHHHcccCCCCEEEEEEeCCcc-CCCccCCCC------ChHHcEEEEE
Confidence 99999999888999999999999999999999999999999998 566777532 2245777664
No 52
>3b8f_A Putative blasticidin S deaminase; cytidine deaminase, structural genomics, MCSG, protein structure initiative; 1.90A {Bacillus anthracis}
Probab=98.49 E-value=3e-07 Score=76.08 Aligned_cols=81 Identities=19% Similarity=0.133 Sum_probs=62.8
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCCC-CCeEEEE--------
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDV-YNSTVYI-------- 66 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~~-~~~~ly~-------- 66 (352)
|+.|++.++++..... .|||+|+. ||+|+ +|+|-.+ .+.|||+.||.++.+.|... ....++.
T Consensus 8 ~~~A~~a~~~ayaPyS--~VGAAl~~~dG~i~-~G~NvEnas~~~~lcAEr~Ai~~a~~~G~~~~~~~~v~~~~~~~~~~ 84 (142)
T 3b8f_A 8 YDVVKQLIEQRYPNDW--GGAAAIRVEDGTIY-TSVAPDVINASTELCMETGAILEAHKFQKKVTHSICLARENEHSELK 84 (142)
T ss_dssp HHHHHHHHHHHCSSSC--EEEEEEEETTSCEE-EECCCCCSSGGGCCCTTHHHHHHHHHHTCCEEEEEEEEESSTTSCCE
T ss_pred HHHHHHHHHhcCCCCC--CEEEEEEeCCCcEE-EEECcccccCCcccCHHHHHHHHHHHCCCCcEEEEEEEecCCCCCCC
Confidence 4677888887754444 59999996 99988 7999765 47999999999998877643 4556665
Q ss_pred eCCCCCCCCCCcchHHHHHHhCCc
Q psy14502 67 TLEPCSYFGYTPPCTEALIKSGIK 90 (352)
Q Consensus 67 t~ePC~~~g~t~~C~~~i~~~gi~ 90 (352)
++-|| .+|...|.+.+-.
T Consensus 85 ~~sPC------G~CRq~l~e~~~~ 102 (142)
T 3b8f_A 85 VLSPC------GVCQERLFYWGPE 102 (142)
T ss_dssp ECCCC------HHHHHHHGGGCTT
T ss_pred CCCcH------HHHHHHHHHhCCC
Confidence 45599 5999999999744
No 53
>1r5t_A Cytidine deaminase; zinc dependent deaminase, RNA editing, apobec-1 related protein, hydrolase; 2.00A {Saccharomyces cerevisiae} SCOP: c.97.1.1
Probab=98.46 E-value=7.5e-07 Score=73.68 Aligned_cols=80 Identities=23% Similarity=0.284 Sum_probs=63.2
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCC--CCCeEEEEe----C-C
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYD--VYNSTVYIT----L-E 69 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~--~~~~~ly~t----~-e 69 (352)
+.|++.++++.....+..|||+|+. ||+|+ +|.|-.+ .+.|||..||.++...|.. ++...+|.. . .
T Consensus 16 ~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-~G~NvEnasy~~t~cAEr~Ai~~a~~~G~~~~i~~i~vv~~~~~~~~~ 94 (142)
T 1r5t_A 16 RAALKACELSYSPYSHFRVGCSILTNNDVIF-TGANVENASYSNCICAERSAMIQVLMAGHRSGWKCMVICGDSEDQCVS 94 (142)
T ss_dssp HHHHHHGGGCBCTTTCCCEEEEEECTTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCSCCCEEEEEESCSSSCCC
T ss_pred HHHHHHHHhcCCCcCCCCEEEEEEeCCCCEE-EEEeecccCCCCCcCHHHHHHHHHHHcCCCCceEEEEEEeCCCCcccC
Confidence 4566666666443335459999997 89888 5998764 4799999999999988764 778888884 5 8
Q ss_pred CCCCCCCCcchHHHHHHhC
Q psy14502 70 PCSYFGYTPPCTEALIKSG 88 (352)
Q Consensus 70 PC~~~g~t~~C~~~i~~~g 88 (352)
|| .+|...|.+.+
T Consensus 95 PC------G~CRq~l~e~~ 107 (142)
T 1r5t_A 95 PC------GVCRQFINEFV 107 (142)
T ss_dssp CC------HHHHHHHHTTS
T ss_pred HH------HHHHHHHHHhC
Confidence 99 59999999986
No 54
>3r2n_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, tuberculosis; 2.30A {Mycobacterium leprae} SCOP: c.97.1.0
Probab=98.40 E-value=9.3e-07 Score=72.53 Aligned_cols=86 Identities=24% Similarity=0.242 Sum_probs=62.6
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCCCCCeEEEEe------CCC
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYDVYNSTVYIT------LEP 70 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~~~~~~ly~t------~eP 70 (352)
+.|.+.++++..-..+..|||+|+. ||+|+ +|.|-.+ .+.|||..||.++...|.. +=..++++ +.|
T Consensus 15 ~~A~~a~~~ayaPyS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Av~~G~~-~i~aiav~~~~~~~~~P 92 (138)
T 3r2n_A 15 KAAVAARANSYAPYSNFPVGVAGFVNDGRLI-TGVNVENASYGLALCAECSMISALYATGGG-RLVAVYCVDGNGDSLMP 92 (138)
T ss_dssp HHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCC-CEEEEEEECTTSCBCCC
T ss_pred HHHHHHHHhccCCCCCCcEEEEEEeCCCcEE-EEEcccccCCCCCcCHHHHHHHHHHHcCCC-ceEEEEEEcCCCCcCCC
Confidence 4566665655443335559999998 99987 9999765 3789999999999988653 22346666 799
Q ss_pred CCCCCCCcchHHHHHHhCCcEEEEE
Q psy14502 71 CSYFGYTPPCTEALIKSGIKKVIIA 95 (352)
Q Consensus 71 C~~~g~t~~C~~~i~~~gi~~vv~~ 95 (352)
| ++|...|.+.+-..|++.
T Consensus 93 C------G~CRQ~l~E~~~~~i~v~ 111 (138)
T 3r2n_A 93 C------GRCRQLLYEHGGPELKIM 111 (138)
T ss_dssp C------HHHHHHHHHHHCTTCEEE
T ss_pred C------HHHHHHHHHhCCCCEEEE
Confidence 9 699999999863335554
No 55
>2d30_A Cytidine deaminase; purines, pyrimidines, nucleosides, nucleotides, salvage of nucleosides and nucleotides, structural genomics; 2.40A {Bacillus anthracis} SCOP: c.97.1.1
Probab=98.38 E-value=1.5e-06 Score=71.60 Aligned_cols=87 Identities=20% Similarity=0.331 Sum_probs=62.6
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCC-CCCeEEEEe----CCCC
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYD-VYNSTVYIT----LEPC 71 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~-~~~~~ly~t----~ePC 71 (352)
+.|.+.++++.....+..|||+++. ||+|+ +|.|-.+ .+.|||..||.++...|.. ++.-.++.. +.||
T Consensus 17 ~~A~~a~~~AyaPYS~f~VGAAll~~dG~i~-~G~NvEnasy~~t~CAEr~Ai~~Avs~G~~~~~aiav~~~~~~~~~PC 95 (141)
T 2d30_A 17 QEAIEARKQAYVPYSKFQVGAALLTQDGKVY-RGCNVENASYGLCNCAERTALFKAVSEGDKEFVAIAIVADTKRPVPPC 95 (141)
T ss_dssp HHHHHHHTTCBCTTTCCCEEEEEEETTCCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEEESCSSCCCCC
T ss_pred HHHHHHHHhcCCCcCCCcEEEEEEeCCCCEE-EeeccccCCCCcccCHHHHHHHHHHHCCCCceEEEEEEeCCCCccCcC
Confidence 4566666666544335559999997 89877 8999764 4789999999999987653 344444444 6899
Q ss_pred CCCCCCcchHHHHHHhCCc--EEEEE
Q psy14502 72 SYFGYTPPCTEALIKSGIK--KVIIA 95 (352)
Q Consensus 72 ~~~g~t~~C~~~i~~~gi~--~vv~~ 95 (352)
++|...|.+.+-. +|++.
T Consensus 96 ------G~CRQ~l~E~~~~~~~V~~~ 115 (141)
T 2d30_A 96 ------GACRQVMVELCKQDTKVYLS 115 (141)
T ss_dssp ------HHHHHHHHHHSCTTCEEEEE
T ss_pred ------HHHHHHHHHhcCCCeEEEEE
Confidence 5999999998632 44443
No 56
>3mpz_A Cytidine deaminase; ssgcid, structu genomics, seattle structural genomics center for infectious hydrolase; 1.70A {Mycobacterium smegmatis} PDB: 3ijf_X 4f3w_A
Probab=97.89 E-value=3.1e-05 Score=64.11 Aligned_cols=86 Identities=19% Similarity=0.280 Sum_probs=60.7
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCC-CCCCeEEEE----eCCCC
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGY-DVYNSTVYI----TLEPC 71 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~-~~~~~~ly~----t~ePC 71 (352)
+.|.+.++++..-..+..|||+|.. ||+|+ +|.|-.+ .+.|||..||.++...|. .++...++. .+.||
T Consensus 30 ~~A~~a~~~AYaPYS~F~VGAAll~~dG~i~-tG~NvEnasy~~t~CAEr~Ai~~Avs~G~~~i~aiavv~~~~~~~~PC 108 (150)
T 3mpz_A 30 SKAIEVSRHAYAPYSGFPVGAAALVDDGRTV-TGCNVENVSYGLGLCAECAVVCALHSGGGGRLVALSCVGPDGGVLMPC 108 (150)
T ss_dssp HHHHHHHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCCEEEEEEECTTSCBCCCC
T ss_pred HHHHHHHHhccCCCCCCCEEEEEEeCCCCEE-EEEecccccCCccccHHHHHHHHHHHcCCCceEEEEEEcCCCCccCCC
Confidence 4556655555443345559999987 99988 8999765 378999999999988875 334433332 26799
Q ss_pred CCCCCCcchHHHHHHhCCcEEEE
Q psy14502 72 SYFGYTPPCTEALIKSGIKKVII 94 (352)
Q Consensus 72 ~~~g~t~~C~~~i~~~gi~~vv~ 94 (352)
.+|...|.+.+-..+++
T Consensus 109 ------G~CRQ~L~Ef~~~~v~v 125 (150)
T 3mpz_A 109 ------GRCRQVLLEHGGPELLI 125 (150)
T ss_dssp ------HHHHHHHHHHHCTTCEE
T ss_pred ------HHHHHHHHHhCCCCEEE
Confidence 59999999985333443
No 57
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=97.72 E-value=8.8e-05 Score=68.36 Aligned_cols=77 Identities=19% Similarity=0.181 Sum_probs=59.1
Q ss_pred HHHHHhhc-CCCCCCCcEEEEEEe-CCeEEEEeECCCCC------CCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCC
Q psy14502 4 ALQQAKLS-INSSPNPRVGCVIVK-EKRIISCGYTKSPG------GNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFG 75 (352)
Q Consensus 4 a~~~a~~~-~~~~~~p~vgaviv~-~~~i~~~g~~~~~~------~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g 75 (352)
+...|++. .....+..|||+++. ||+|+ +|.|-.+. +.|||..||.++...|.. +=..++++..||
T Consensus 56 ~a~~a~~~AyaPyS~f~VGAall~~dG~i~-~G~NvEnas~~~~~t~CAEr~Ai~~A~~~G~~-~~~~iav~~~PC---- 129 (294)
T 1ctt_A 56 LLPLAAACARTPLSNFNVGAIARGVSGTWY-FGANMEFIGATMQQTVHAEQSAISHAWLSGEK-ALAAITVNYTPC---- 129 (294)
T ss_dssp HHHHHHHTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCC-CEEEEEESSCCC----
T ss_pred HHHHHHHhccCccCCCcEEEEEEeCCCCEE-EEEcCCccCccCCCccCHHHHHHHHHHHcCCC-cEEEEEEEcCCC----
Confidence 34445543 554335669999997 89888 89997642 689999999999887653 456777889999
Q ss_pred CCcchHHHHHHhC
Q psy14502 76 YTPPCTEALIKSG 88 (352)
Q Consensus 76 ~t~~C~~~i~~~g 88 (352)
++|...|.+.+
T Consensus 130 --G~CRQ~l~E~~ 140 (294)
T 1ctt_A 130 --GHCRQFMNELN 140 (294)
T ss_dssp --HHHHHHHTTBT
T ss_pred --HHHHHHHHHhC
Confidence 59999999986
No 58
>1ctt_A Cytidine deaminase; hydrolase; HET: DHZ; 2.20A {Escherichia coli} SCOP: c.97.1.1 c.97.1.1 PDB: 1aln_A* 1af2_A* 1ctu_A*
Probab=97.66 E-value=0.00011 Score=67.65 Aligned_cols=82 Identities=17% Similarity=0.150 Sum_probs=65.0
Q ss_pred CHHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCC---CCCCeEEEEeCC---
Q psy14502 1 MTLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGY---DVYNSTVYITLE--- 69 (352)
Q Consensus 1 m~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~---~~~~~~ly~t~e--- 69 (352)
|+.|++.++++.....+..|||+|+. ||+|+ +|.|-.+ .+.|||..||.++...|. ..+...+|.+.+
T Consensus 192 ~~~A~~a~~~ayaPYS~f~VGAAl~~~dG~i~-tG~NvEnasy~~tlCAEr~Ai~~av~~G~~~~~i~~i~vv~~~~~~~ 270 (294)
T 1ctt_A 192 SQAAIAAANRSHMPYSKSPSGVALECKDGRIF-SGSYAENAAFNPTLPPLQGALILLNLKGYDYPDIQRAVLAEKADAPL 270 (294)
T ss_dssp HHHHHHHHHTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECTTCSS
T ss_pred HHHHHHHHHhcCCCcCCCceEEEEEeCCCCEE-EEEeeecCCCCCccCHHHHHHHHHHHcCCCcCCEEEEEEEecCCCCc
Confidence 35788888887554435559999997 88555 6888654 578999999999998864 577899999887
Q ss_pred -CCCCCCCCcchHHHHHHhCC
Q psy14502 70 -PCSYFGYTPPCTEALIKSGI 89 (352)
Q Consensus 70 -PC~~~g~t~~C~~~i~~~gi 89 (352)
|| ++|...|.+.+-
T Consensus 271 sPC------G~CRq~L~ef~~ 285 (294)
T 1ctt_A 271 IQW------DATSATLKALGC 285 (294)
T ss_dssp CCH------HHHHHHHHHHTC
T ss_pred Ccc------HHHHHHHHHHCC
Confidence 99 599999999864
No 59
>3dmo_A Cytidine deaminase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, hydrolase; 1.60A {Burkholderia pseudomallei}
Probab=97.27 E-value=0.0014 Score=53.41 Aligned_cols=79 Identities=27% Similarity=0.397 Sum_probs=55.3
Q ss_pred HHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCC---CCCeEEEEe----CCC
Q psy14502 3 LALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYD---VYNSTVYIT----LEP 70 (352)
Q Consensus 3 ~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~---~~~~~ly~t----~eP 70 (352)
.|.+...++.....+..|||++.. ||+|. +|.|-.+ .+.|||..||-++...|.. ++.-.+... .-|
T Consensus 17 ~A~~a~~~AyaPYS~F~VGAAll~~dG~iy-tG~NVEnasy~~t~CAEr~Ai~~Avs~G~~~~~i~aiavv~~~~~~~~P 95 (138)
T 3dmo_A 17 AAKAAREKAYAPYSNFKVGAALVTNDGKVF-HGCNVENASYGLCNCAERTALFSALAAGYRPGEFAAIAVVGETHGPIAP 95 (138)
T ss_dssp HHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCSSGGGCBCHHHHHHHHHHHTTCCTTCEEEEEEEESCSSSCCC
T ss_pred HHHHHHHhccCCcCCCCEEEEEEeCCCCEE-EEEeecccccccccCHHHHHHHHHHHcCCCcccEEEEEEEcCCCCccCC
Confidence 445544455554455569999998 88875 6888765 3689999999999888654 332222221 569
Q ss_pred CCCCCCCcchHHHHHHhC
Q psy14502 71 CSYFGYTPPCTEALIKSG 88 (352)
Q Consensus 71 C~~~g~t~~C~~~i~~~g 88 (352)
| ..|...|.+.+
T Consensus 96 C------G~CRQ~l~Ef~ 107 (138)
T 3dmo_A 96 C------GACRQVMIELG 107 (138)
T ss_dssp C------HHHHHHHHHHH
T ss_pred C------HHHHHHHHHhC
Confidence 9 59999999974
No 60
>3oj6_A Blasticidin-S deaminase; ssgcid, seattle structural genomics for infectious disease, hydrolase; 1.70A {Coccidioides immitis}
Probab=97.11 E-value=0.0043 Score=51.73 Aligned_cols=64 Identities=30% Similarity=0.411 Sum_probs=48.2
Q ss_pred CcEEEEEEe-CCeEEEEeECCCC--CCCcHHHHHHHHHHhcCCCCCCeEEEEe------CCCCCCCCCCcchHHHHHHhC
Q psy14502 18 PRVGCVIVK-EKRIISCGYTKSP--GGNHAEIDALLNAAAQGYDVYNSTVYIT------LEPCSYFGYTPPCTEALIKSG 88 (352)
Q Consensus 18 p~vgaviv~-~~~i~~~g~~~~~--~~~HaE~~a~~~~~~~~~~~~~~~ly~t------~ePC~~~g~t~~C~~~i~~~g 88 (352)
..|||++.. ||+|+ +|.|-.. .+.|||..||.++...|..--...+-++ .-|| ..|...|.+.+
T Consensus 51 f~VGAAll~~dG~i~-tG~NVEn~~~~lCAEr~Ai~~Avs~G~~~~~ai~vv~~~~~~~~~PC------G~CRQvL~Ef~ 123 (158)
T 3oj6_A 51 YSVASAAISDDGRVF-SGVNVYHFNGGPCAELVVLGVAAAAGATKLTHIVAIANEGRGILSPC------GRCRQVLADLH 123 (158)
T ss_dssp SCEEEEEEETTSCEE-EEECCCCTTTCCCHHHHHHHHHHHTTCCCEEEEEEEETTTTEEECCC------HHHHHHHHHHS
T ss_pred CcEEEEEEeCCCCEE-EEEccccCCccccHHHHHHHHHHHhCCCceEEEEEEeCCCCCcCCCC------HHHHHHHHHhC
Confidence 359999988 99988 8888653 5789999999999888763222333332 3599 59999999975
No 61
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=95.82 E-value=0.025 Score=51.90 Aligned_cols=74 Identities=20% Similarity=0.219 Sum_probs=55.5
Q ss_pred Hhhc-CCCCCCCcEEEEEEe-CCeEEEEeECCCC------CCCcHHHHHHHHHHhcCCCCCCeEEEEeCCCCCCCCCCcc
Q psy14502 8 AKLS-INSSPNPRVGCVIVK-EKRIISCGYTKSP------GGNHAEIDALLNAAAQGYDVYNSTVYITLEPCSYFGYTPP 79 (352)
Q Consensus 8 a~~~-~~~~~~p~vgaviv~-~~~i~~~g~~~~~------~~~HaE~~a~~~~~~~~~~~~~~~ly~t~ePC~~~g~t~~ 79 (352)
|++. .....+..|||++.. ||+|+ +|.|-.+ .+.|||..||-++...|.. +=..+.+...|| ..
T Consensus 63 A~~~AyaPyS~F~VGAAll~~dG~i~-~G~NvEna~as~~~t~CAEr~Ai~~Av~~G~~-~i~~iav~~~PC------G~ 134 (298)
T 4eg2_A 63 AAAYSYAPISEFYVGAIVRGISGRLY-LGANMEFTGAQLGQTVHAEQCAISHAWMKGEK-GVADITINFSPC------GH 134 (298)
T ss_dssp HHTTCBCTTTCCCCEEEEEETTSCEE-EEECBCCTTSCGGGCBCHHHHHHHHHHHTTCS-CEEEEEESSCCC------HH
T ss_pred HHhhCcCCcCCCcEEEEEEECCCcEE-EEEcccccccccCccccHHHHHHHHHHhCCCC-ceEEEEeecCCC------HH
Confidence 4433 555555569999988 88865 6888763 2689999999999887653 234567778999 69
Q ss_pred hHHHHHHhCC
Q psy14502 80 CTEALIKSGI 89 (352)
Q Consensus 80 C~~~i~~~gi 89 (352)
|..-|.+.+-
T Consensus 135 CRQ~l~Ef~~ 144 (298)
T 4eg2_A 135 CRQFMNELTT 144 (298)
T ss_dssp HHHHHTTBTT
T ss_pred HHHHHHHhcC
Confidence 9999999863
No 62
>3v4k_A DNA DC->DU-editing enzyme apobec-3G; antiviral defense, HOST-virus interaction, hydrola metal-binding, nucleus; HET: DNA; 1.38A {Homo sapiens} PDB: 3v4j_A* 3ir2_A* 2kem_A* 2jyw_A* 2kbo_A* 3e1u_A* 3iqs_A*
Probab=95.22 E-value=0.024 Score=48.90 Aligned_cols=71 Identities=23% Similarity=0.325 Sum_probs=50.1
Q ss_pred CCcHHHHHHHHHHhcC---CCCCCeEEEEeCCCCCCCCCCcchHHHHHHhC-----CcEEEEEee----CCCCCCcchHH
Q psy14502 41 GNHAEIDALLNAAAQG---YDVYNSTVYITLEPCSYFGYTPPCTEALIKSG-----IKKVIIAIN----DPNPLVSGKGV 108 (352)
Q Consensus 41 ~~HaE~~a~~~~~~~~---~~~~~~~ly~t~ePC~~~g~t~~C~~~i~~~g-----i~~vv~~~~----~~~~~~~~~~~ 108 (352)
..|||+.-|.+..... ...-.-|.|+|..|| +.|+..|+..- |+=.||++. +|. ...|.
T Consensus 78 ~~HAEl~FL~~~~~~~Ld~~~~Y~vTwy~SWSPC------~~CA~~v~~FL~~~~~v~L~If~aRLY~~~~~---~~~gL 148 (203)
T 3v4k_A 78 GRHAELCFLDVIPFWKLDLDQDYRVTCFTSWSPC------FSCAQEMAKFISKNKHVSLCIKTARIYDDQGR---CQEGL 148 (203)
T ss_pred CCcHHHHHHHHhhhccCCCCCeEEEEEEEeCCCh------HHHHHHHHHHHhhCCCeEEEEEEEeecccCch---HHHHH
Confidence 4799999999886431 122467889999999 58999999853 333333321 232 34689
Q ss_pred HHhhhCCCeeee
Q psy14502 109 AQLISAGISVKQ 120 (352)
Q Consensus 109 ~~l~~~gi~v~~ 120 (352)
..|.++|++|..
T Consensus 149 r~L~~aG~~v~i 160 (203)
T 3v4k_A 149 RTLAEAGAKISI 160 (203)
T ss_pred HHHHHCCCeEEe
Confidence 999999999875
No 63
>4eg2_A Cytidine deaminase; UMP synthesis, Zn binding, hydrolase; HET: URI; 2.20A {Vibrio cholerae}
Probab=94.38 E-value=0.14 Score=46.95 Aligned_cols=80 Identities=14% Similarity=0.042 Sum_probs=56.5
Q ss_pred HHHHHHHhhcCCCCCCCcEEEEEEe-CCeEEEEeECCCC----CCCcHHHHHHHHHHhcCCC---CCCeEEEEe----CC
Q psy14502 2 TLALQQAKLSINSSPNPRVGCVIVK-EKRIISCGYTKSP----GGNHAEIDALLNAAAQGYD---VYNSTVYIT----LE 69 (352)
Q Consensus 2 ~~a~~~a~~~~~~~~~p~vgaviv~-~~~i~~~g~~~~~----~~~HaE~~a~~~~~~~~~~---~~~~~ly~t----~e 69 (352)
+.|++.++++..-..+..|||.|.. ||+|. +|.|-.+ .+.+||..||-++...|.. .+...++-. +-
T Consensus 197 ~~A~~a~~~ayaPYS~~~vGAAl~t~dG~iy-tG~nvEnAay~~slcAEr~Al~~av~~G~~~~~i~aiv~v~~~~~~~s 275 (298)
T 4eg2_A 197 QQALRAMNISHSPYTQNFSGVALKMRSGAIY-LGAYAENAAFNPSLPPLQVALAQAMMMGESFEDIEAAALVESATGKIS 275 (298)
T ss_dssp HHHHHHHTTCBCTTTCCCEEEEEEETTSCEE-EEECBCCTTSTTCBCHHHHHHHHHHHTTCCGGGEEEEEEEECTTCSSC
T ss_pred HHHHHHHHhccCCccCCCeEEEEEeCCCCEE-EEEeeeccccCCCCCHHHHHHHHHHHCCCCccCeEEEEEEeCCCCCcC
Confidence 4677777776544445559999998 88876 5766543 5889999999999887764 344444443 24
Q ss_pred CCCCCCCCcchHHHHHHhC
Q psy14502 70 PCSYFGYTPPCTEALIKSG 88 (352)
Q Consensus 70 PC~~~g~t~~C~~~i~~~g 88 (352)
|| .+|...|...+
T Consensus 276 PC------G~CRqvL~e~~ 288 (298)
T 4eg2_A 276 HL------ADTQATLEVIN 288 (298)
T ss_dssp CH------HHHHHHHHHHC
T ss_pred Cc------HHHHHHHHHhC
Confidence 77 48888888875
No 64
>3vow_A Probable DNA DC->DU-editing enzyme apobec-3C; antiviral deffense, HOST-virus interaction, metal- HIV-1 VIF, BET, single domain, sivagm, hydrolase; 2.15A {Homo sapiens} PDB: 3vm8_A
Probab=92.51 E-value=0.51 Score=40.19 Aligned_cols=100 Identities=21% Similarity=0.292 Sum_probs=63.2
Q ss_pred CCCCcEEEEEEe---CCeEE--EEeE--C--CCCCCCcHHHHHHHHHHhcCCCC---CCeEEEEeCCCCCCCCCCcchHH
Q psy14502 15 SPNPRVGCVIVK---EKRII--SCGY--T--KSPGGNHAEIDALLNAAAQGYDV---YNSTVYITLEPCSYFGYTPPCTE 82 (352)
Q Consensus 15 ~~~p~vgaviv~---~~~i~--~~g~--~--~~~~~~HaE~~a~~~~~~~~~~~---~~~~ly~t~ePC~~~g~t~~C~~ 82 (352)
+.|...=|-.|+ ++.-+ ..|+ | ......|||+.=|.......-+. -.-|-|+|..|| +.|+.
T Consensus 29 gRn~T~LCYeVk~~~~~s~~~~~~g~~~nq~~~~~~~HAE~~Fl~~~~~~~L~~~~~y~VTwy~SwSPC------~~CA~ 102 (190)
T 3vow_A 29 DRNETWLCFTVEGIKRRSVVSWKTGVFRNQVDSETHCHAERCFLSWFCDDILSPNTKYQVTWYTSWSPC------PDCAG 102 (190)
T ss_dssp TCCEEEEEEEEEEEETTEEEEEEEEEEEEETTSCGGGSHHHHHHHHHSSTTSCTTSEEEEEEEEEECCC------HHHHH
T ss_pred CCCceEEEEEEEccCCCCCCccccCeecCcCCCcccccHHHHHHHHHhhcCCCCCceEEEEEEEeCCch------HHHHH
Confidence 444445566664 23222 2343 2 22356799999999984321122 247899999999 59999
Q ss_pred HHHHh-----CCcEEEEEeeCCCCC--CcchHHHHhhhCCCeeee
Q psy14502 83 ALIKS-----GIKKVIIAINDPNPL--VSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 83 ~i~~~-----gi~~vv~~~~~~~~~--~~~~~~~~l~~~gi~v~~ 120 (352)
.|+.. +|+=.||++.--... -.-.|...|.++|+.|..
T Consensus 103 ~va~FL~~~~~v~L~If~aRLY~~~~~~~q~gLr~L~~~G~~v~i 147 (190)
T 3vow_A 103 EVAEFLARHSNVNLTIFTARLYYFQYPCYQEGLRSLSQEGVAVEI 147 (190)
T ss_dssp HHHHHHHHCTTEEEEEEEEECTTTTSHHHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHhCCCeEEEEEEEecccccCchHHHHHHHHHHCCCcEEE
Confidence 99874 566555555432211 123588999999999875
No 65
>3lm8_A Thiamine pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: VIB; 2.60A {Bacillus subtilis}
Probab=50.62 E-value=13 Score=32.25 Aligned_cols=47 Identities=13% Similarity=0.083 Sum_probs=39.4
Q ss_pred ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeec
Q psy14502 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288 (352)
Q Consensus 242 ~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG 288 (352)
+++.++.+++.|++++..+.+++..|.+.+++.+.++|...|++.|+
T Consensus 56 ~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga 102 (222)
T 3lm8_A 56 TEQERRRIEKAAPALHVYQAEKDQTDLDLALDWALEKQPDIIQIFGI 102 (222)
T ss_dssp CHHHHHHHHHHCTTCEEECCCSSSCHHHHHHHHHHHHCCSEEEEESC
T ss_pred CHHHHHHHHhcCCeEEEeCCCCCCCHHHHHHHHHHHcCCCEEEEEcC
Confidence 34556677788888888887667889999999999999999999987
No 66
>3ihk_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG, SMR83; HET: TPP; 3.00A {Streptococcus mutans}
Probab=49.29 E-value=29 Score=29.92 Aligned_cols=47 Identities=9% Similarity=0.080 Sum_probs=39.1
Q ss_pred ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC-CCCEEEEeec
Q psy14502 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR-KINELHIEAG 288 (352)
Q Consensus 242 ~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~-g~~~i~veGG 288 (352)
+++.++.+++.+++++..+.+++..|.+.+++.+.++ |...|++.|+
T Consensus 50 ~~~~~~~~~~~~~~i~~~~~eKD~TD~e~Al~~a~~~~~~~~I~i~Ga 97 (218)
T 3ihk_A 50 SAEEFKQIKAKAKKLVMAPAEKNDTDTELALKTIFDCFGRVEIIVFGA 97 (218)
T ss_dssp CHHHHHHHHTTCSSEEECCSSCSSCHHHHHHHHHHHHTSSCEEEEESC
T ss_pred CHHHHHHHHhcCCeEEECCCCCCCCHHHHHHHHHHHhCCCCEEEEECC
Confidence 4455677788899888888777789999999999887 7899999986
No 67
>3k94_A Thiamin pyrophosphokinase; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG; 2.10A {Geobacillus thermodenitrificans}
Probab=48.73 E-value=12 Score=32.45 Aligned_cols=47 Identities=11% Similarity=0.030 Sum_probs=39.4
Q ss_pred ChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeec
Q psy14502 242 LPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288 (352)
Q Consensus 242 ~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG 288 (352)
+++.++.+++.|++++.++.+++..|.+.+++.+.++|...|++.|+
T Consensus 55 ~~~~~~~~~~~~~~i~~~p~eKD~TD~e~Al~~a~~~g~~~I~i~Ga 101 (223)
T 3k94_A 55 PAEDVVKLQQAFPDLDVWPAEKDKTDMEIALDWAVEQTARCIRLFGA 101 (223)
T ss_dssp CHHHHHHHHHHCTTCCEECCBTTBCHHHHHHHHHHTTCCSEEEEESC
T ss_pred CHHHHHHHHhcCCeEEECCCcCCCCHHHHHHHHHHHcCCCEEEEEcC
Confidence 44556677788888888876667889999999999999999999997
No 68
>3mel_A Thiamin pyrophosphokinase family protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium; HET: TPP; 2.79A {Enterococcus faecalis}
Probab=43.99 E-value=36 Score=29.41 Aligned_cols=46 Identities=17% Similarity=0.185 Sum_probs=37.6
Q ss_pred hhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCC-EEEEeec
Q psy14502 243 PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKIN-ELHIEAG 288 (352)
Q Consensus 243 ~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~-~i~veGG 288 (352)
++.++.+++.|+.++..+.+++..|.+.+++.+.++|.. .|++.|+
T Consensus 55 ~~~~~~~~~~~~~~~~~~~eKD~TD~e~Al~~~~~~~~~~~I~i~Ga 101 (222)
T 3mel_A 55 REEYHFVQETTETLIQAPAEKDDTDTQLALQEALQRFPQAEMTIIGA 101 (222)
T ss_dssp TTHHHHHHHHCSSEEECCSSCSSCHHHHHHHHHHHHCTTSEEEEECC
T ss_pred HHHHHHHHhcCCcEEECCccCCCCHHHHHHHHHHHhCCCceEEEEcc
Confidence 344567778888888877777788999999999988886 8999986
No 69
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=35.69 E-value=91 Score=27.25 Aligned_cols=45 Identities=24% Similarity=0.396 Sum_probs=34.6
Q ss_pred hhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhC------CCCEEEEeec
Q psy14502 243 PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKR------KINELHIEAG 288 (352)
Q Consensus 243 ~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~------g~~~i~veGG 288 (352)
++.++.+++.+++++..+ +++..|++.+++.+.++ +...|++.|+
T Consensus 81 ~~~~~~~~~~~~~i~~~p-eKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa 131 (247)
T 3s4y_A 81 PEVREYYATKGCELISTP-DQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGG 131 (247)
T ss_dssp HHHHHHHHHTTCEEEECC-CTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECC
T ss_pred HHHHHHHHhcCCEEEECC-CCCcCHHHHHHHHHHHhhhhccCCCCEEEEEec
Confidence 344566777888888744 56688999999988754 7899999886
No 70
>2ab1_A Hypothetical protein; HS.95870, DUF498, structural genomics, protein structure INI PSI, center for eukaryotic structural genomics, CESG; 2.59A {Homo sapiens} SCOP: c.103.1.1 PDB: 2q4q_A
Probab=35.47 E-value=65 Score=24.96 Aligned_cols=51 Identities=20% Similarity=0.301 Sum_probs=35.9
Q ss_pred chHHHHHHhCCcEEEEEeeCCCCC-CcchHHHHhhhCCCeeeecchhhhhhh
Q psy14502 79 PCTEALIKSGIKKVIIAINDPNPL-VSGKGVAQLISAGISVKQGLMQKEAYE 129 (352)
Q Consensus 79 ~C~~~i~~~gi~~vv~~~~~~~~~-~~~~~~~~l~~~gi~v~~~~~~~~~~~ 129 (352)
.=...++..++.-+++|.-..... ....-.+.|+++||.|+..--.+.|+.
T Consensus 52 ~~l~~ll~~~~evliiGtG~~~~~~~~~~~~~~l~~~gI~ve~m~T~~A~rt 103 (122)
T 2ab1_A 52 ADVKEVVEKGVQTLVIGRGMSEALKVPSSTVEYLKKHGIDVRVLQTEQAVKE 103 (122)
T ss_dssp HHHHHHHTTCCSEEEEEECSSCCSCCCHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred HHHHHHhhCCCCEEEECCCCCCccCCCHHHHHHHHHcCCEEEEeCHHHHHHH
Confidence 344555666788899998766654 556678999999999987444455553
No 71
>3c2q_A Uncharacterized conserved protein; putative LOR/SDH, structural genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis S2}
Probab=34.47 E-value=63 Score=29.63 Aligned_cols=36 Identities=11% Similarity=0.208 Sum_probs=23.7
Q ss_pred HHHHHHHHHh-----CCCCEEEEeecHHHH--------HHHHHcCCCcEE
Q psy14502 268 LQAVIIELGK-----RKINELHIEAGYQLN--------TALILEGCVDEL 304 (352)
Q Consensus 268 l~~~l~~L~~-----~g~~~i~veGG~~l~--------~~fl~~gLvDEi 304 (352)
+.+.|++.++ +|+ .|++.+||.++ ..|+++|.||-+
T Consensus 119 la~~l~~~r~~~~~~~gG-~Iv~V~GPAvvhtga~~ala~LIr~GYV~~L 167 (345)
T 3c2q_A 119 IAKEMHEIREEYKKTGTG-GIAIVGGPAIIHTGGGPALAKMVELGYIQAI 167 (345)
T ss_dssp HHHHHHHHHHHHHHHSSC-CEEEEECTHHHHTTCHHHHHHHHHTTCCSEE
T ss_pred HHHHHHHHHhhccccCCC-eEEEEecCeEecCCcHHHHHHHHHcCccceE
Confidence 5666666666 354 45555777764 578888888865
No 72
>3l8m_A Probable thiamine pyrophosphokinase; thiamin diphosphate biosynthetic process, ATP binding, structural genomics, PSI-2; 2.40A {Staphylococcus saprophyticus}
Probab=33.75 E-value=26 Score=30.00 Aligned_cols=45 Identities=16% Similarity=0.148 Sum_probs=34.2
Q ss_pred hhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeec
Q psy14502 243 PMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAG 288 (352)
Q Consensus 243 ~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG 288 (352)
++.++.+++.+ +++..+.+++..|.+.+++.+.++|...|++.|+
T Consensus 54 ~~~~~~~~~~~-~i~~~p~eKD~TD~e~Al~~a~~~~~~~I~i~Ga 98 (212)
T 3l8m_A 54 DSERNFIQQQI-EINPYNSEKDDTDLALGIDQAVKRGYRNIDVYGA 98 (212)
T ss_dssp HHHHHHHHHHT-BCCCCC---CBCHHHHHHHHHHHTTCCEEEEESC
T ss_pred HHHHHHHhcCC-cEEEECCcCCCCHHHHHHHHHHHCCCCEEEEEcC
Confidence 44455666777 7777776666889999999999999999999987
No 73
>2gm2_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Xanthomonas campestris PV}
Probab=30.10 E-value=60 Score=25.53 Aligned_cols=50 Identities=12% Similarity=0.163 Sum_probs=36.4
Q ss_pred chHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhh
Q psy14502 79 PCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAY 128 (352)
Q Consensus 79 ~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~ 128 (352)
.-...++..++.-+++|.-.......-.-.+.|+++||.|+..--.+.|+
T Consensus 55 e~l~~ll~~~pevliiGTG~~~~~l~p~~~~~l~~~GI~vE~m~T~aAcr 104 (132)
T 2gm2_A 55 AHMDAVLALNPAVILLGTGERQQFPSTDVLAACLTRGIGLEAMTNAAAAR 104 (132)
T ss_dssp TTSHHHHHHCCSEEEEECTTSCCCCCHHHHHHHHHHTCEEEEECHHHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCCCCcCCHHHHHHHHHcCCEEEEeCHHHHHH
Confidence 45567777789999999876665455566799999999998743344554
No 74
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=29.19 E-value=94 Score=29.77 Aligned_cols=33 Identities=18% Similarity=0.334 Sum_probs=24.7
Q ss_pred CCHHHHHHHHHh--CCCCEEEEeecHHHHHHHHHc
Q psy14502 266 VDLQAVIIELGK--RKINELHIEAGYQLNTALILE 298 (352)
Q Consensus 266 ~dl~~~l~~L~~--~g~~~i~veGG~~l~~~fl~~ 298 (352)
-++.++++.+.. ...+++++.|||.+...+.+.
T Consensus 219 ~~i~~~~~~~g~~~~~~~~v~I~GgG~ig~~lA~~ 253 (461)
T 4g65_A 219 NHIRSVMSELQRLEKPYRRIMIVGGGNIGASLAKR 253 (461)
T ss_dssp TTHHHHHHHTTGGGSCCCEEEEECCSHHHHHHHHH
T ss_pred chHHHHHHhhccccccccEEEEEcchHHHHHHHHH
Confidence 367777777764 478999999999987666653
No 75
>3ghf_A Septum site-determining protein MINC; structural genomics, cell division, cell cycle, septation, PSI-2, protein structure initiative; HET: CIT; 2.20A {Salmonella typhimurium LT2}
Probab=26.34 E-value=1e+02 Score=23.61 Aligned_cols=36 Identities=8% Similarity=0.043 Sum_probs=30.7
Q ss_pred CCCHHHHHHHHHhCCCCEEEEeecH-H-HHHHHHHcCC
Q psy14502 265 KVDLQAVIIELGKRKINELHIEAGY-Q-LNTALILEGC 300 (352)
Q Consensus 265 ~~dl~~~l~~L~~~g~~~i~veGG~-~-l~~~fl~~gL 300 (352)
..|+.++++.|++.|..-|=|.|+. . +.....+.||
T Consensus 60 ~~dl~~L~~~l~~~gl~~vGV~g~~~~~~~~~a~~~GL 97 (120)
T 3ghf_A 60 PVNWPELHKIVTSTGLRIIGVSGCKDASLKVEIDRMGL 97 (120)
T ss_dssp SCCHHHHHHHHHTTTCEEEEEESCCCHHHHHHHHHHTC
T ss_pred hHHHHHHHHHHHHcCCEEEEEeCCCcHHHHHHHHHCCC
Confidence 5799999999999999999999875 4 6677777888
No 76
>4ehi_A Bifunctional purine biosynthesis protein PURH; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE BTB; 2.28A {Campylobacter jejuni subsp}
Probab=25.60 E-value=2.1e+02 Score=27.93 Aligned_cols=103 Identities=17% Similarity=0.163 Sum_probs=70.5
Q ss_pred HHHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEeC-CCCCCCCCCcchH
Q psy14502 4 ALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYITL-EPCSYFGYTPPCT 81 (352)
Q Consensus 4 a~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t~-ePC~~~g~t~~C~ 81 (352)
.+..|++. ..+..|. -|+++||+.|+.|.-+.. ..|+-..|+.++...+..++|+.|=.-- .|= +.|.
T Consensus 421 DL~FAw~v~K~vKSNA---Iv~akdg~tvGiGaGQ~s-RV~s~r~A~~kA~~~g~~~~G~vlASDAFFPF------~D~v 490 (534)
T 4ehi_A 421 DLEIAMKIAAFTKSNN---VVYVKNGAMVAIGMGMTS-RIDAAKAAIAKAKEMGLDLQGCVLASEAFFPF------RDSI 490 (534)
T ss_dssp HHHHHHHHHHHSCSSC---EEEEETTEEEEEECSSSC-HHHHHHHHHHHHHHTTCCCTTCEEECSSCCCS------THHH
T ss_pred HHHHHHHHHHhcCCce---EEEEeCCeEEEECCCCcc-hHHHHHHHHHHHHhhccCCCCeEEEeccccCC------CccH
Confidence 35556665 3444443 467789999999875543 4688888999997666677888886644 477 4899
Q ss_pred HHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeee
Q psy14502 82 EALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVK 119 (352)
Q Consensus 82 ~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~ 119 (352)
.....+||+.|+----.-+ ....++.-.++||..+
T Consensus 491 e~Aa~aGV~aIiQPGGSiR---D~evI~aane~giaMv 525 (534)
T 4ehi_A 491 DEASKVGVKAIVEPGGSIR---DDEVVKAADEYGMALY 525 (534)
T ss_dssp HHHHHTTCCEEEECCCCTT---HHHHHHHHHHHTCEEE
T ss_pred HHHHHcCCEEEECCCCCCc---cHHHHHHHHHcCCeEE
Confidence 9999999998875211111 2345777778888754
No 77
>2fi9_A Outer membrane protein; bartonella hense protein structure initiative, midwest center for structural genomics, MCSG; 1.80A {Bartonella henselae} SCOP: c.103.1.1
Probab=24.71 E-value=1.2e+02 Score=23.57 Aligned_cols=52 Identities=10% Similarity=-0.029 Sum_probs=36.5
Q ss_pred cchHHHHHHhC--CcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhhh
Q psy14502 78 PPCTEALIKSG--IKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAYE 129 (352)
Q Consensus 78 ~~C~~~i~~~g--i~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~ 129 (352)
+.-...+.... +.-+++|.-.......-.-.+.|+++||.|+.---...|+.
T Consensus 56 ~~~l~~l~~~~p~pevliiGtG~~~~~l~p~~~~~l~~~GI~vE~m~T~aAcrt 109 (128)
T 2fi9_A 56 QEDISRVLEESDQIEVLLIGTGVELLRLPEELRVLLWEKRISSDTMSTGAAVRT 109 (128)
T ss_dssp TGGGHHHHHTGGGCSEEEEECTTSCCCCCHHHHHHHHHTTCEEEEECHHHHHHH
T ss_pred HHHHHHHHhcCCCCCEEEECCCCCCCCCCHHHHHHHHHcCCEEEEeCHHHHHHH
Confidence 34556666666 88899998766554555667999999999987444455553
No 78
>2fvt_A Conserved hypothetical protein; MTH938-like fold, structural genomics, PSI, protein structure initiative; NMR {Rhodopseudomonas palustris} SCOP: c.103.1.1
Probab=23.99 E-value=1.3e+02 Score=23.75 Aligned_cols=50 Identities=6% Similarity=0.011 Sum_probs=35.1
Q ss_pred chHHHHHHhC--CcEEEEEeeCCCCCCcchHHHHhhhCCCeeeecchhhhhh
Q psy14502 79 PCTEALIKSG--IKKVIIAINDPNPLVSGKGVAQLISAGISVKQGLMQKEAY 128 (352)
Q Consensus 79 ~C~~~i~~~g--i~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~ 128 (352)
.-...+.... +.-+++|.-.......-.-.+.|+++||.|+.---.+.|+
T Consensus 56 e~l~~l~~~~p~pevliiGTG~~~~~l~p~l~~~l~~~GI~vE~M~T~aAcr 107 (135)
T 2fvt_A 56 YSLQRVFDNANAIDTLIVGTGADVWIAPRQLREALRGVNVVLDTMQTGPAIR 107 (135)
T ss_dssp TTTHHHHHTTTSCSEEEEECTTSCCCCCHHHHHHHHTTTCEEEEECHHHHHH
T ss_pred HHHHHHHhcCCCCCEEEEcCCCCCCcCCHHHHHHHHHcCCEEEEeCHHHHHH
Confidence 4455666666 8889999866655555566799999999998743344454
No 79
>1vlj_A NADH-dependent butanol dehydrogenase; TM0820, structural G JCSG, protein structure initiative, PSI, joint center for S genomics; HET: NAP; 1.78A {Thermotoga maritima} SCOP: e.22.1.2
Probab=23.92 E-value=1.5e+02 Score=27.74 Aligned_cols=85 Identities=9% Similarity=0.029 Sum_probs=51.6
Q ss_pred CceEEEEcCCC-------hhhHHHHHhCCcEEEEecCC--CCC-CCHHHHHHHHHhCCCCEEEEeecHHHHHH--HHHcC
Q psy14502 232 GGSCIFTATDL-------PMKRKILEDLGHEVIVLPNN--LGK-VDLQAVIIELGKRKINELHIEAGYQLNTA--LILEG 299 (352)
Q Consensus 232 ~~~~v~t~~~~-------~~~~~~l~~~g~~v~~~~~~--~~~-~dl~~~l~~L~~~g~~~i~veGG~~l~~~--fl~~g 299 (352)
.+++|+|.... ......|++.|+++..++.- +.. -.+.++++.+++.++.-|+-.|||+.... ++...
T Consensus 44 ~r~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~f~~v~~~p~~~~v~~~~~~~~~~~~D~IIavGGGsviD~AK~iA~~ 123 (407)
T 1vlj_A 44 RKVLFLYGGGSIKKNGVYDQVVDSLKKHGIEWVEVSGVKPNPVLSKVHEAVEVAKKEKVEAVLGVGGGSVVDSAKAVAAG 123 (407)
T ss_dssp CEEEEEECSSHHHHSSHHHHHHHHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCSEEEEEESHHHHHHHHHHHHH
T ss_pred CeEEEEECchHHhhccHHHHHHHHHHHcCCeEEEecCccCCCCHHHHHHHHHHHHhcCCCEEEEeCChhHHHHHHHHHHH
Confidence 46777776331 11235567789988777541 111 24667777788889988888999986522 22221
Q ss_pred ------CC----------cEEEEEEeceeecCC
Q psy14502 300 ------CV----------DELLLYISPILIGEA 316 (352)
Q Consensus 300 ------Lv----------DEi~l~i~P~ilG~g 316 (352)
+. .-+-+...|...|.|
T Consensus 124 ~~~~~~~~d~~~~~~~~~~~~p~i~IPTTagtg 156 (407)
T 1vlj_A 124 ALYEGDIWDAFIGKYQIEKALPIFDVLTISATG 156 (407)
T ss_dssp TTCSSCGGGGGGTSCCCCCCCCEEEEECSCSSC
T ss_pred HhCCCCHHHHhcccccCCCCCCEEEEeCCCCcc
Confidence 11 234567778888866
No 80
>1vk9_A Conserved hypothetical protein TM1506; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: UNL; 2.70A {Thermotoga maritima} SCOP: c.97.1.3
Probab=23.87 E-value=96 Score=25.08 Aligned_cols=49 Identities=16% Similarity=0.115 Sum_probs=37.5
Q ss_pred CCCeEEEEeCCCCCCCCCCcchHHHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 59 VYNSTVYITLEPCSYFGYTPPCTEALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 59 ~~~~~ly~t~ePC~~~g~t~~C~~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
++|+.++-.. -||. -+.+++..||++|+-..- +..+.++|+++||+|..
T Consensus 61 L~ga~vADKV-----VGKA--AA~Lmv~ggV~~VyA~VI------Se~Al~lL~~~GI~v~Y 109 (151)
T 1vk9_A 61 LEGSLVIDKM-----VGKA--AASFLLKMKPDHIHAKVI------SKPALKLMNEYGQSFSY 109 (151)
T ss_dssp CTTCEEEEEE-----ECHH--HHHHHHHHCCSEEEEEEE------EHHHHHHHHHTTCCEEE
T ss_pred ccCCEehHHH-----HhHH--HHHHHHhcChheehhHHh------hHHHHHHHHHcCCceee
Confidence 8888887654 2332 577888899999987663 34589999999999875
No 81
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=23.79 E-value=1.9e+02 Score=21.15 Aligned_cols=65 Identities=6% Similarity=-0.112 Sum_probs=39.6
Q ss_pred CCCeEEEEcCCCCCCCCCcccc-------CCceEEEEcCCChhhHHHHHhCCcE-EEEecCCCCCCCHHHHHHHHHhC
Q psy14502 209 HQPYRIVIDSYLRIDPFFRVLK-------GGGSCIFTATDLPMKRKILEDLGHE-VIVLPNNLGKVDLQAVIIELGKR 278 (352)
Q Consensus 209 ~~p~~vvv~~~~~~~~~~~~~~-------~~~~~v~t~~~~~~~~~~l~~~g~~-v~~~~~~~~~~dl~~~l~~L~~~ 278 (352)
.+|-.|++|-...-.....+.. ..|++++|...+..........|+. |+.= ..+..++...+++.
T Consensus 58 ~~~dlvi~D~~l~~~~g~~~~~~l~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~K-----P~~~~~L~~~i~~~ 130 (135)
T 3snk_A 58 TRPGIVILDLGGGDLLGKPGIVEARALWATVPLIAVSDELTSEQTRVLVRMNASDWLHK-----PLDGKELLNAVTFH 130 (135)
T ss_dssp CCCSEEEEEEETTGGGGSTTHHHHHGGGTTCCEEEEESCCCHHHHHHHHHTTCSEEEES-----SCCHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCCCchHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHcCcHhhccC-----CCCHHHHHHHHHHH
Confidence 4566777776543222223332 4677888877766666666677764 4443 36888888877753
No 82
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=23.46 E-value=2.8e+02 Score=22.07 Aligned_cols=38 Identities=16% Similarity=0.266 Sum_probs=28.4
Q ss_pred HHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEee
Q psy14502 247 KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA 287 (352)
Q Consensus 247 ~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veG 287 (352)
..++..|++++.++. ..+++++++...+.+..-|.+..
T Consensus 40 ~~l~~~G~eVi~lG~---~~p~e~lv~aa~~~~~diV~lS~ 77 (161)
T 2yxb_A 40 RALRDAGFEVVYTGL---RQTPEQVAMAAVQEDVDVIGVSI 77 (161)
T ss_dssp HHHHHTTCEEECCCS---BCCHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHCCCEEEECCC---CCCHHHHHHHHHhcCCCEEEEEe
Confidence 566778888888864 46788888888887776666654
No 83
>3zzm_A Bifunctional purine biosynthesis protein PURH; transferase, hydrolase; HET: JLN; 2.20A {Mycobacterium tuberculosis} PDB: 4a1o_A*
Probab=23.11 E-value=2.5e+02 Score=27.41 Aligned_cols=101 Identities=18% Similarity=0.147 Sum_probs=70.4
Q ss_pred HHHHHhhc-CCCCCCCcEEEEEEeCCeEEEEeECCCCCCCcHHHHHHHHHHhcCCCCCCeEEEEe-CCCCCCCCCCcchH
Q psy14502 4 ALQQAKLS-INSSPNPRVGCVIVKEKRIISCGYTKSPGGNHAEIDALLNAAAQGYDVYNSTVYIT-LEPCSYFGYTPPCT 81 (352)
Q Consensus 4 a~~~a~~~-~~~~~~p~vgaviv~~~~i~~~g~~~~~~~~HaE~~a~~~~~~~~~~~~~~~ly~t-~ePC~~~g~t~~C~ 81 (352)
.+..|++. ..+..|. -|+++||+.|+.|.-+.. ..|+-..|+.++ +..++|+.|=.- ..|= +.|.
T Consensus 413 dL~fAw~v~K~vkSNA---Iv~akdg~tvGiGaGQ~s-RV~s~r~A~~kA---g~~~~G~vlaSDAFFPF------~D~v 479 (523)
T 3zzm_A 413 DLVFAWRACRAVKSNA---IVIAADGATVGVGMGQVN-RVDAARLAVERG---GERVRGAVAASDAFFPF------PDGL 479 (523)
T ss_dssp HHHHHHHHGGGSCSSC---EEEEETTEEEEEECSCSS-HHHHHHHHHHHH---GGGCTTCEEEESSCCSS------HHHH
T ss_pred HHHHHHHHHHhccCce---EEEEECCeEEEECCCCcc-hHHHHHHHHHHh---ccccCCeEEEeccCcCC------CccH
Confidence 45667776 4444454 467789999999875543 458888899999 667788888764 3577 5899
Q ss_pred HHHHHhCCcEEEEEeeCCCCCCcchHHHHhhhCCCeeee
Q psy14502 82 EALIKSGIKKVIIAINDPNPLVSGKGVAQLISAGISVKQ 120 (352)
Q Consensus 82 ~~i~~~gi~~vv~~~~~~~~~~~~~~~~~l~~~gi~v~~ 120 (352)
.....+||+.|+----.-+ ....++.-.++||..+.
T Consensus 480 e~aa~aGv~aIiQPGGSiR---D~evI~aane~giaMvf 515 (523)
T 3zzm_A 480 ETLAAAGVTAVVHPGGSVR---DEEVTEAAAKAGVTLYL 515 (523)
T ss_dssp HHHHHTTCCEEEECCCCTT---HHHHHHHHHHHTCEEEE
T ss_pred HHHHHcCCEEEECCCCCCC---cHHHHHHHHHcCCeEEE
Confidence 9999999998875211111 23457777788887643
No 84
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=23.03 E-value=1.7e+02 Score=24.68 Aligned_cols=62 Identities=23% Similarity=0.187 Sum_probs=43.3
Q ss_pred HHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEeecHH----------HHHHHHHcCCCcEEEEEEeceeecCC
Q psy14502 247 KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEAGYQ----------LNTALILEGCVDELLLYISPILIGEA 316 (352)
Q Consensus 247 ~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veGG~~----------l~~~fl~~gLvDEi~l~i~P~ilG~g 316 (352)
..++..|++++.++. .+.++++++...+.+..-|.+.|+.. +...|-++++-|. .|+++||.
T Consensus 114 ~~l~~~G~~Vi~LG~---~vp~e~iv~~~~~~~~d~v~l~~S~l~~~~~~~~~~~i~~l~~~~~~~~-----v~v~vGG~ 185 (215)
T 3ezx_A 114 TMLGANGFQIVDLGV---DVLNENVVEEAAKHKGEKVLLVGSALMTTSMLGQKDLMDRLNEEKLRDS-----VKCMFGGA 185 (215)
T ss_dssp HHHHHTSCEEEECCS---SCCHHHHHHHHHHTTTSCEEEEEECSSHHHHTHHHHHHHHHHHTTCGGG-----SEEEEESS
T ss_pred HHHHHCCCeEEEcCC---CCCHHHHHHHHHHcCCCEEEEEchhcccCcHHHHHHHHHHHHHcCCCCC-----CEEEEECC
Confidence 567889999999986 48899999999998887777722222 3344445555443 37777876
No 85
>3bfj_A 1,3-propanediol oxidoreductase; opportunistic pathogens, decamer, structural genomics,struct proteomics in europe, spine; 2.70A {Klebsiella pneumoniae}
Probab=23.00 E-value=2.8e+02 Score=25.45 Aligned_cols=70 Identities=13% Similarity=0.066 Sum_probs=43.5
Q ss_pred HHHHhCCcEEEEecCC--CCC-CCHHHHHHHHHhCCCCEEEEeecHHHHHH--HHHc------CCCc----------EEE
Q psy14502 247 KILEDLGHEVIVLPNN--LGK-VDLQAVIIELGKRKINELHIEAGYQLNTA--LILE------GCVD----------ELL 305 (352)
Q Consensus 247 ~~l~~~g~~v~~~~~~--~~~-~dl~~~l~~L~~~g~~~i~veGG~~l~~~--fl~~------gLvD----------Ei~ 305 (352)
..|++.|+++..++.- +.. -.+.++++.+++.++.-|+-.|||+.... ++.. .+.| -+-
T Consensus 57 ~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~~~~~~d~IIavGGGsv~D~aK~iA~~~~~~~~~~d~~~~~~~~~~~~p 136 (387)
T 3bfj_A 57 HYLREAGIEVAIFDGVEPNPKDTNVRDGLAVFRREQCDIIVTVGGGSPHDCGKGIGIAATHEGDLYQYAGIETLTNPLPP 136 (387)
T ss_dssp HHHHHTTCEEEEECCCCSSCBHHHHHHHHHHHHHTTCCEEEEEESHHHHHHHHHHHHHHHSSSCSGGGCBSSCCCSCCCC
T ss_pred HHHHHcCCeEEEECCccCCCCHHHHHHHHHHHHhcCCCEEEEeCCcchhhHHHHHHHHHhCCCCHHHHhcccccCCCCCC
Confidence 4566788888766531 111 24667777788889988888899986522 2221 1112 245
Q ss_pred EEEeceeecCC
Q psy14502 306 LYISPILIGEA 316 (352)
Q Consensus 306 l~i~P~ilG~g 316 (352)
+...|...|.|
T Consensus 137 ~i~IPTT~gtg 147 (387)
T 3bfj_A 137 IVAVNTTAGTA 147 (387)
T ss_dssp EEEEECSTTCC
T ss_pred EEEEeCCCCcc
Confidence 66778888766
No 86
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=22.71 E-value=1.5e+02 Score=22.95 Aligned_cols=61 Identities=13% Similarity=0.142 Sum_probs=40.8
Q ss_pred HHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEee--c------HHHHHHHHHcCCCcEEEEEEeceeecCC
Q psy14502 247 KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA--G------YQLNTALILEGCVDELLLYISPILIGEA 316 (352)
Q Consensus 247 ~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veG--G------~~l~~~fl~~gLvDEi~l~i~P~ilG~g 316 (352)
..++..|++++.++. ...++++++...+.+..-|.+.+ + ..+...|-++++=| .|+++|+.
T Consensus 25 ~~l~~~G~~Vi~lG~---~~p~e~~v~~a~~~~~d~v~lS~~~~~~~~~~~~~i~~l~~~g~~~------i~v~vGG~ 93 (137)
T 1ccw_A 25 HAFTNAGFNVVNIGV---LSPQELFIKAAIETKADAILVSSLYGQGEIDCKGLRQKCDEAGLEG------ILLYVGGN 93 (137)
T ss_dssp HHHHHTTCEEEEEEE---EECHHHHHHHHHHHTCSEEEEEECSSTHHHHHTTHHHHHHHTTCTT------CEEEEEES
T ss_pred HHHHHCCCEEEECCC---CCCHHHHHHHHHhcCCCEEEEEecCcCcHHHHHHHHHHHHhcCCCC------CEEEEECC
Confidence 567889999998875 47889999999888777676655 2 22344444555433 35566654
No 87
>1eo1_A Hypothetical protein MTH1175; mixed A/B protein, mixed beta sheet, strand order 321456; NMR {Methanothermobacterthermautotrophicus} SCOP: c.55.5.1
Probab=22.34 E-value=2.2e+02 Score=21.39 Aligned_cols=41 Identities=10% Similarity=0.187 Sum_probs=24.2
Q ss_pred ceEEEEcCCChhhHHHHHhCCcEEEEecCCCCCCCHHHHHHHHHh
Q psy14502 233 GSCIFTATDLPMKRKILEDLGHEVIVLPNNLGKVDLQAVIIELGK 277 (352)
Q Consensus 233 ~~~v~t~~~~~~~~~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~ 277 (352)
-.+|++..-.......|.+.|++++... ..+++++++.+.+
T Consensus 66 v~~vi~~~iG~~a~~~L~~~GI~v~~~~----~~~i~eal~~~~~ 106 (124)
T 1eo1_A 66 VKAVIASSPGPNAFEVLNELGIKIYRAT----GTSVEENLKLFTE 106 (124)
T ss_dssp CCEEEECCSSHHHHHHHHHHTCEEEECC----SCCHHHHHHHHHT
T ss_pred CCEEEECCcCHHHHHHHHHCCCEEEEcC----CCCHHHHHHHHHh
Confidence 3445555545555566677777766643 2467777776654
No 88
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=22.05 E-value=2.4e+02 Score=24.03 Aligned_cols=22 Identities=5% Similarity=-0.038 Sum_probs=17.8
Q ss_pred HHHHHHHHHhCCCCEEEEeecH
Q psy14502 268 LQAVIIELGKRKINELHIEAGY 289 (352)
Q Consensus 268 l~~~l~~L~~~g~~~i~veGG~ 289 (352)
...+.+.|.++|.++|.+.+|.
T Consensus 115 g~~a~~~L~~~G~~~I~~i~~~ 136 (288)
T 3gv0_A 115 AYEAVERLAQCGRKRIAVIVPP 136 (288)
T ss_dssp HHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHHHHCCCCeEEEEcCC
Confidence 5667778888899999888775
No 89
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=21.71 E-value=2.1e+02 Score=21.06 Aligned_cols=41 Identities=17% Similarity=0.062 Sum_probs=23.7
Q ss_pred CCceEEEEcCCChhhHHHHHhCCcE-EEEecCCCCCCCHHHHHHHHH
Q psy14502 231 GGGSCIFTATDLPMKRKILEDLGHE-VIVLPNNLGKVDLQAVIIELG 276 (352)
Q Consensus 231 ~~~~~v~t~~~~~~~~~~l~~~g~~-v~~~~~~~~~~dl~~~l~~L~ 276 (352)
..|++++|...+..........|+. |+.-+ .+..++...+.
T Consensus 77 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp-----~~~~~l~~~l~ 118 (143)
T 3jte_A 77 HMAVIILTGHGDLDNAILAMKEGAFEYLRKP-----VTAQDLSIAIN 118 (143)
T ss_dssp TCEEEEEECTTCHHHHHHHHHTTCSEEEESS-----CCHHHHHHHHH
T ss_pred CCeEEEEECCCCHHHHHHHHHhCcceeEeCC-----CCHHHHHHHHH
Confidence 3566777766665555556667764 54433 45555555554
No 90
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=21.33 E-value=2.1e+02 Score=21.49 Aligned_cols=42 Identities=7% Similarity=0.010 Sum_probs=27.3
Q ss_pred CCceEEEEcCCChhhHHHHHhCCcE-EEEecCCCCCCCHHHHHHHHHh
Q psy14502 231 GGGSCIFTATDLPMKRKILEDLGHE-VIVLPNNLGKVDLQAVIIELGK 277 (352)
Q Consensus 231 ~~~~~v~t~~~~~~~~~~l~~~g~~-v~~~~~~~~~~dl~~~l~~L~~ 277 (352)
..|++++|..............|+. |+.- ..+..+++..+.+
T Consensus 94 ~~~ii~ls~~~~~~~~~~~~~~g~~~~l~K-----p~~~~~l~~~i~~ 136 (150)
T 4e7p_A 94 ETKVVVVTTFKRAGYFERAVKAGVDAYVLK-----ERSIADLMQTLHT 136 (150)
T ss_dssp SCEEEEEESCCCHHHHHHHHHTTCSEEEET-----TSCHHHHHHHHHH
T ss_pred CCeEEEEeCCCCHHHHHHHHHCCCcEEEec-----CCCHHHHHHHHHH
Confidence 4567777777666666666677775 4443 3577777777765
No 91
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=20.96 E-value=3e+02 Score=27.24 Aligned_cols=60 Identities=17% Similarity=0.224 Sum_probs=43.9
Q ss_pred HHHHhCCcEEEEecCCCCCCCHHHHHHHHHhCCCCEEEEee--cHH------HHHHHHHcCCCcEEEEEEeceeecCC
Q psy14502 247 KILEDLGHEVIVLPNNLGKVDLQAVIIELGKRKINELHIEA--GYQ------LNTALILEGCVDELLLYISPILIGEA 316 (352)
Q Consensus 247 ~~l~~~g~~v~~~~~~~~~~dl~~~l~~L~~~g~~~i~veG--G~~------l~~~fl~~gLvDEi~l~i~P~ilG~g 316 (352)
..|+..|++++.++. .+.+.++++...+.+..-|.+.+ +++ ++..|-++|+ | .|+++||.
T Consensus 120 ~~L~~~G~eVi~LG~---~vP~e~iv~aa~~~~~diVgLS~l~t~~~~~m~~~i~~Lr~~g~-~------i~ViVGGa 187 (579)
T 3bul_A 120 VVLQCNNYEIVDLGV---MVPAEKILRTAKEVNADLIGLSGLITPSLDEMVNVAKEMERQGF-T------IPLLIGGA 187 (579)
T ss_dssp HHHHTTTCEEEECCS---SBCHHHHHHHHHHHTCSEEEEECCSTHHHHHHHHHHHHHHHTTC-C------SCEEEEST
T ss_pred HHHHHCCCEEEECCC---CCCHHHHHHHHHHcCCCEEEEEecCCCCHHHHHHHHHHHHHcCC-C------CeEEEEcc
Confidence 467789999999976 48899999999988877777765 222 3445555665 3 68888886
No 92
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=20.30 E-value=1.9e+02 Score=24.57 Aligned_cols=22 Identities=14% Similarity=-0.035 Sum_probs=16.2
Q ss_pred HHHHHHHHHhCCCCEEEEeecH
Q psy14502 268 LQAVIIELGKRKINELHIEAGY 289 (352)
Q Consensus 268 l~~~l~~L~~~g~~~i~veGG~ 289 (352)
...+.+.|.++|.++|.+.+|.
T Consensus 119 g~~a~~~L~~~G~~~i~~i~~~ 140 (292)
T 3k4h_A 119 AREVAEYLISLGHKQIAFIGGG 140 (292)
T ss_dssp HHHHHHHHHHTTCCCEEEEESC
T ss_pred HHHHHHHHHHCCCceEEEEeCc
Confidence 4566677777888888887765
Done!