BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14503
(230 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|134095496|ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
gi|133739399|emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans]
Length = 234
Score = 272 bits (695), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 127/229 (55%), Positives = 169/229 (73%), Gaps = 2/229 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G RIIEIGCVE+ +R++TGNN H+YINP RDSE+ ALA+HGLTT
Sbjct: 2 RQIVLDTETTGLNPRSGDRIIEIGCVELIDRRLTGNNFHHYINPERDSEEGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EIVD F +Y+S +E++IHNA FDVGFLD EL + F ++ I DTL
Sbjct: 62 EFLSDKPKFAEIVDEFRDYISGAEVVIHNAPFDVGFLDAELKRVEMPLFKDHVGGILDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
A+++H GKRNSLDALCDRY +S HRTLHG LLDAELLAEVYLAMTRGQ++L +
Sbjct: 122 QQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMDLGG 181
Query: 181 KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ +S+ I ++ +I ++ A + EL +H +++ +DK G+C+W+
Sbjct: 182 QDADSDGIALEVVAIADILLQPATAEELAEHELLMQSLDKEVKGQCLWR 230
>gi|167562346|ref|ZP_02355262.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
EO147]
gi|167574356|ref|ZP_02367230.1| DNA polymerase III subunit epsilon [Burkholderia oklahomensis
C6786]
Length = 240
Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 126/234 (53%), Positives = 163/234 (69%), Gaps = 7/234 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH+Y+NPGRDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARAGDRVIEIGCVELLNRRLTGNNLHFYVNPGRDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EIVD ++V ++E+IIHNA FD+GFLD E SLLG FT + + DTL
Sbjct: 62 EFLSDKPKFAEIVDELRDFVRDAELIIHNAPFDLGFLDAEFSLLGLPTFTDHCAGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L +
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVID-ML 180
Query: 183 NNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + P ++P+ A +EL H L +DK G C+W+K
Sbjct: 181 DEGGDAHRNGDAPRMAFSGLDLPVLAATDDELAAHEAQLDALDKSVKGACVWRK 234
>gi|399019667|ref|ZP_10721813.1| DNA polymerase III, epsilon subunit [Herbaspirillum sp. CF444]
gi|398097558|gb|EJL87862.1| DNA polymerase III, epsilon subunit [Herbaspirillum sp. CF444]
Length = 241
Score = 269 bits (688), Expect = 6e-70, Method: Compositional matrix adjust.
Identities = 129/230 (56%), Positives = 163/230 (70%), Gaps = 3/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NRQ+TGNNLH+YINP RDS++ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNPRTGDRVIEIGCVEMLNRQLTGNNLHFYINPERDSDEGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI D F +YV +EIIIHNA FDVGFLD E LLG + F +++ I D+L
Sbjct: 62 EFLSDKPKFAEIADEFRDYVRGAEIIIHNAPFDVGFLDAEFKLLGLAPFKEHVDHIVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA++ H G+RNSLDALCDRY IS HRTLHGGLLDA LLAEVYLAMTRGQ++L
Sbjct: 122 QMAKEQHPGRRNSLDALCDRYGISNAHRTLHGGLLDAALLAEVYLAMTRGQNSLTMDLAD 181
Query: 183 NNSNNIETKI---KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
N + + ++ + A+ EL H +L+ +DK G C+W+
Sbjct: 182 GGDNEDGSPVLELAPLADVIVVAASEEELGLHETVLNTLDKEVKGTCVWR 231
>gi|83720697|ref|YP_443303.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
E264]
gi|257139540|ref|ZP_05587802.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
E264]
gi|83654522|gb|ABC38585.1| DNA polymerase III, epsilon subunit [Burkholderia thailandensis
E264]
Length = 241
Score = 265 bits (678), Expect = 7e-69, Method: Compositional matrix adjust.
Identities = 123/234 (52%), Positives = 164/234 (70%), Gaps = 7/234 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G RIIE+GCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K KF++IVD ++V ++E+IIHNA FD+GFLD E +LLG F+ + + DTL
Sbjct: 62 EFLRDKPKFADIVDQLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L +
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVID-ML 180
Query: 183 NNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + K P ++P+ A EL H L +DK G C+W+K
Sbjct: 181 DEAGDAHRKGDEPQMAFSGLDLPVLAATDEELADHEAQLDALDKSVKGACVWRK 234
>gi|167836205|ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
MSMB43]
gi|424903985|ref|ZP_18327495.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
MSMB43]
gi|390929963|gb|EIP87365.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
MSMB43]
Length = 241
Score = 265 bits (677), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 124/233 (53%), Positives = 165/233 (70%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G RIIE+GCVE+ NR++TG+NLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGSNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EIVD ++V ++E+IIHNA FD+GFLD E +LLG +FT + + DTL
Sbjct: 62 EFLSDKPKFAEIVDQLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---- 178
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLD 181
Query: 179 KPKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + N+ E ++ ++P+ A EL H L +DK G C+W+K
Sbjct: 182 EAGDAHRNSNEPRMAFSGLDLPVLAATGEELAAHEAQLDALDKSVKGSCVWRK 234
>gi|167582322|ref|ZP_02375196.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis
TXDOH]
gi|167620419|ref|ZP_02389050.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis Bt4]
Length = 241
Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 123/234 (52%), Positives = 164/234 (70%), Gaps = 7/234 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G RIIE+GCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K KF++IVD ++V ++E+IIHNA FD+GFLD E +LLG F+ + + DTL
Sbjct: 62 EFLRDKPKFADIVDQLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPAFSDHCAGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L +
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVID-ML 180
Query: 183 NNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + K P ++P+ A EL H L +DK G C+W+K
Sbjct: 181 DEAGDAHRKGDEPRMAFSGLDLPVLAATDEELADHEAQLDALDKSVKGACVWRK 234
>gi|398832629|ref|ZP_10590786.1| DNA polymerase III, epsilon subunit [Herbaspirillum sp. YR522]
gi|398222966|gb|EJN09322.1| DNA polymerase III, epsilon subunit [Herbaspirillum sp. YR522]
Length = 246
Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 125/230 (54%), Positives = 165/230 (71%), Gaps = 3/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ G+RI+EIGCVE+ NRQ++G NLH+YINP RDSE+ ALA+HGLTT
Sbjct: 2 RQIVLDTETTGLSPRAGNRILEIGCVELLNRQLSGRNLHFYINPERDSEEGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F +I FL+YV ++IIIHNA FDVGFLD EL+LLG F++++ + D+L
Sbjct: 62 EFLSDKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPKFSEHVDSVIDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---K 179
MA++ H G+RNSLDALCDRY IS HRTLHGGLLDA LL+EVYLAMTRGQ+ L
Sbjct: 122 QMAKEQHPGRRNSLDALCDRYGISNAHRTLHGGLLDAALLSEVYLAMTRGQNTLTMDLGS 181
Query: 180 PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ +N + + +I + A+ EL H +L+++DK G C+W+
Sbjct: 182 SEDQAANALALEATPLADIIVIAASDEELALHEGVLNQLDKEVRGACVWR 231
>gi|415940406|ref|ZP_11555640.1| DNA polymerase III epsilon subunit [Herbaspirillum frisingense
GSF30]
gi|407759177|gb|EKF68908.1| DNA polymerase III epsilon subunit [Herbaspirillum frisingense
GSF30]
Length = 244
Score = 264 bits (675), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 122/230 (53%), Positives = 169/230 (73%), Gaps = 3/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ +G+RI+EIGCVE+ NRQ++G NLH+YINP RDSE+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F +I FL+YV ++IIIHNA FDVGFLD EL+LLG F ++I + D+L
Sbjct: 62 EFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKEHIADVVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA+++H G+RNSLDALCDRY IS HR LHG LLDAELLAEVYL+MTRGQ++L
Sbjct: 122 QMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLGT 181
Query: 183 N---NSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ + + ++ + + + A+ +EL H +L+++DK + G C+W+
Sbjct: 182 EEEVSAGDGKLELAPLSEVIVLAASEDELALHEDVLNQLDKEARGSCVWR 231
>gi|76810101|ref|YP_333003.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1710b]
gi|121601053|ref|YP_992607.1| DNA polymerase III subunit epsilon [Burkholderia mallei SAVP1]
gi|124385495|ref|YP_001026592.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10229]
gi|126441990|ref|YP_001058508.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 668]
gi|126455280|ref|YP_001065768.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1106a]
gi|134282747|ref|ZP_01769450.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
gi|217423557|ref|ZP_03455058.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
gi|226196200|ref|ZP_03791785.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237811761|ref|YP_002896212.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
MSHR346]
gi|238563612|ref|ZP_00438559.2| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
4]
gi|242318034|ref|ZP_04817050.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1106b]
gi|251767848|ref|ZP_02268597.2| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
gi|254177751|ref|ZP_04884406.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
10399]
gi|254180217|ref|ZP_04886816.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1655]
gi|254197669|ref|ZP_04904091.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
gi|254199436|ref|ZP_04905802.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
gi|254258454|ref|ZP_04949508.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1710a]
gi|254298053|ref|ZP_04965506.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
406e]
gi|254358851|ref|ZP_04975124.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
2002721280]
gi|76579554|gb|ABA49029.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1710b]
gi|121229863|gb|ABM52381.1| DNA polymerase III, epsilon subunit [Burkholderia mallei SAVP1]
gi|124293515|gb|ABN02784.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
10229]
gi|126221483|gb|ABN84989.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 668]
gi|126228922|gb|ABN92462.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1106a]
gi|134245833|gb|EBA45924.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 305]
gi|147749032|gb|EDK56106.1| DNA polymerase III, epsilon subunit [Burkholderia mallei FMH]
gi|148027978|gb|EDK85999.1| DNA polymerase III, epsilon subunit [Burkholderia mallei
2002721280]
gi|157807726|gb|EDO84896.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
406e]
gi|160698790|gb|EDP88760.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
10399]
gi|169654410|gb|EDS87103.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei S13]
gi|184210757|gb|EDU07800.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1655]
gi|217393415|gb|EEC33436.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei 576]
gi|225931786|gb|EEH27788.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
Pakistan 9]
gi|237504517|gb|ACQ96835.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
MSHR346]
gi|238520320|gb|EEP83781.1| DNA polymerase III, epsilon subunit [Burkholderia mallei GB8 horse
4]
gi|242141273|gb|EES27675.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1106b]
gi|243061566|gb|EES43752.1| DNA polymerase III, epsilon subunit [Burkholderia mallei PRL-20]
gi|254217143|gb|EET06527.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
1710a]
Length = 253
Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/234 (52%), Positives = 163/234 (69%), Gaps = 7/234 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G RIIEIGCVE+ NR++TG NLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 15 RQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPERDSDPGALAVHGLTT 74
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EIVD ++V ++E+IIHNA FD+GFLD E +LLG +FT + + DTL
Sbjct: 75 EFLSDKPKFAEIVDPLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGVIDTL 134
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L +
Sbjct: 135 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVID-ML 193
Query: 183 NNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + P ++P+ A EL H L +DK + G C+W+K
Sbjct: 194 DEAGDAHRNGDAPRMAFSGLDLPVLAATDAELAAHEAQLDALDKSAKGVCVWRK 247
>gi|53718980|ref|YP_107966.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
K96243]
gi|53725133|ref|YP_102525.1| DNA polymerase III subunit epsilon [Burkholderia mallei ATCC 23344]
gi|126449393|ref|YP_001080124.1| DNA polymerase III subunit epsilon [Burkholderia mallei NCTC 10247]
gi|167719045|ref|ZP_02402281.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei DM98]
gi|167738046|ref|ZP_02410820.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 14]
gi|167815230|ref|ZP_02446910.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 91]
gi|167823638|ref|ZP_02455109.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 9]
gi|167845182|ref|ZP_02470690.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
B7210]
gi|167893733|ref|ZP_02481135.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 7894]
gi|167902185|ref|ZP_02489390.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei NCTC
13177]
gi|167910426|ref|ZP_02497517.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 112]
gi|167918451|ref|ZP_02505542.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
BCC215]
gi|254188362|ref|ZP_04894873.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|386862256|ref|YP_006275205.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1026b]
gi|403518197|ref|YP_006652330.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
BPC006]
gi|418387758|ref|ZP_12967594.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 354a]
gi|418538822|ref|ZP_13104424.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1026a]
gi|418541386|ref|ZP_13106870.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1258a]
gi|418547630|ref|ZP_13112774.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1258b]
gi|418553789|ref|ZP_13118597.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 354e]
gi|52209394|emb|CAH35339.1| DNA polymerase III, epsilon chain [Burkholderia pseudomallei
K96243]
gi|52428556|gb|AAU49149.1| DNA polymerase III, epsilon subunit [Burkholderia mallei ATCC
23344]
gi|126242263|gb|ABO05356.1| DNA polymerase III, epsilon subunit [Burkholderia mallei NCTC
10247]
gi|157936041|gb|EDO91711.1| DNA polymerase III, epsilon subunit [Burkholderia pseudomallei
Pasteur 52237]
gi|385347107|gb|EIF53777.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1026a]
gi|385358228|gb|EIF64248.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1258a]
gi|385360443|gb|EIF66375.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1258b]
gi|385371189|gb|EIF76392.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 354e]
gi|385376063|gb|EIF80781.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei 354a]
gi|385659384|gb|AFI66807.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
1026b]
gi|403073840|gb|AFR15420.1| DNA polymerase III subunit epsilon [Burkholderia pseudomallei
BPC006]
Length = 240
Score = 264 bits (674), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 124/234 (52%), Positives = 163/234 (69%), Gaps = 7/234 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G RIIEIGCVE+ NR++TG NLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGKNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EIVD ++V ++E+IIHNA FD+GFLD E +LLG +FT + + DTL
Sbjct: 62 EFLSDKPKFAEIVDPLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L +
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVID-ML 180
Query: 183 NNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + P ++P+ A EL H L +DK + G C+W+K
Sbjct: 181 DEAGDAHRNGDAPRMAFSGLDLPVLAATDAELAAHEAQLDALDKSAKGVCVWRK 234
>gi|409407218|ref|ZP_11255669.1| DNA polymerase III subunit epsilon [Herbaspirillum sp. GW103]
gi|386432969|gb|EIJ45795.1| DNA polymerase III subunit epsilon [Herbaspirillum sp. GW103]
Length = 244
Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 123/230 (53%), Positives = 167/230 (72%), Gaps = 3/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ +G+RI+EIGCVE+ NRQ++G NLH+YINP RDSE+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F +I FL+YV ++IIIHNA FDVGFLD EL+LLG F +++ + D+L
Sbjct: 62 EFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKEHVADVVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA+++H G+RNSLDALCDRY IS HR LHG LLDAELLAEVYL+MTRGQ++L
Sbjct: 122 QMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLGA 181
Query: 183 NNS-NNIETKIKIPN--NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ E K+++ + + A+ EL H +L+++DK + G C+W+
Sbjct: 182 EEEVSEGEGKLELAPLAEVIVVTASEEELGLHEDVLNQLDKEARGSCVWR 231
>gi|300312711|ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspirillum seropedicae
SmR1]
gi|300075496|gb|ADJ64895.1| DNA polymerase III, epsilon subunit, protein [Herbaspirillum
seropedicae SmR1]
Length = 244
Score = 262 bits (670), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 123/230 (53%), Positives = 166/230 (72%), Gaps = 3/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ +G+RI+EIGCVE+ NRQ++G NLH+YINP RDSE+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F +I FL+YV ++IIIHNA FDVGFLD EL+LLG F ++ + D+L
Sbjct: 62 EFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA+++H G+RNSLDALCDRY IS HR LHG LLDAELLAEVYL+MTRGQ++L
Sbjct: 122 QMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLGA 181
Query: 183 NNS-NNIETKIKIPN--NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ E K+++ + + A+ EL H +L+++DK + G C+W+
Sbjct: 182 EEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231
>gi|254252714|ref|ZP_04946032.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
gi|124895323|gb|EAY69203.1| DNA polymerase III, epsilon subunit [Burkholderia dolosa AUO158]
Length = 244
Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 121/232 (52%), Positives = 162/232 (69%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G RIIEIGCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+ D +V +E+IIHNA FD+GFLD E +LLG F+++ + DTL
Sbjct: 62 EFLSDKPKFAEVADQIREFVRGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + N + ++P+ A+ EL H+ L ++DK G C+W+
Sbjct: 182 DAATVGGAANGQRVSLAALDLPVLAASDEELAAHHAQLDELDKSVKGTCVWR 233
>gi|120611120|ref|YP_970798.1| DNA polymerase III subunit epsilon [Acidovorax citrulli AAC00-1]
gi|120589584|gb|ABM33024.1| DNA polymerase III, epsilon subunit [Acidovorax citrulli AAC00-1]
Length = 243
Score = 261 bits (668), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 125/235 (53%), Positives = 164/235 (69%), Gaps = 8/235 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ G RIIE+GCVE+ NR++TGNNLH Y NP RDS + AL +HG+
Sbjct: 1 MTRQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPERDSHEDALKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FLK+K KF+E+VD L Y+ +EIIIHNAAFDVGFL+ EL L G FT Y+ +TD
Sbjct: 61 SNEFLKDKPKFAEVVDEILEYLQGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MA++++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIAD 180
Query: 181 KINNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ET +++ +P+ LA+ EL H+ +L++IDK S G+ IWK
Sbjct: 181 DAQEGD--ETAVRLAPVDLSAFTLPVLLASEQELAAHDEVLAQIDKASGGKTIWK 233
>gi|312795584|ref|YP_004028506.1| DNA polymerase III subunit epsilon [Burkholderia rhizoxinica HKI
454]
gi|312167359|emb|CBW74362.1| DNA polymerase III, epsilon chain (EC 2.7.7.7) [Burkholderia
rhizoxinica HKI 454]
Length = 247
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 122/232 (52%), Positives = 166/232 (71%), Gaps = 4/232 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGLN G RIIEIGCVEI NRQ+TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RLLVLDTETTGLNAKGGDRIIEIGCVEIVNRQLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K KF+EI D ++V +++IIIHNA FD+GFL+ E ++LG F + + DTL
Sbjct: 62 EFLRDKPKFAEIADALRDFVKDADIIIHNAPFDIGFLNAEFAMLGLPPFCDHCGEVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
+ A+ + GKRNSLDALC+R+ IS HRTLHG LLDAELLA+VYLAMTRGQ +L +
Sbjct: 122 VQAKAMFPGKRNSLDALCERFGISNAHRTLHGALLDAELLADVYLAMTRGQESLVIDMLA 181
Query: 181 KINNSNNIE-TKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
S ++ T++ + +P+ A+ +EL H +L ++DK G C+W++
Sbjct: 182 DTPGSGSVATTRVSLAQFELPVISASDDELAAHAGVLDELDKARKGPCVWRE 233
>gi|326317571|ref|YP_004235243.1| DNA polymerase III subunit epsilon [Acidovorax avenae subsp. avenae
ATCC 19860]
gi|323374407|gb|ADX46676.1| DNA polymerase III, epsilon subunit [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 243
Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 162/233 (69%), Gaps = 4/233 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ G RIIE+GCVE+ NR++TGNNLH Y NP RDS + AL +HG+
Sbjct: 1 MTRQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPERDSHEDALKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FLK+K KF+E+VD L Y+ +EIIIHNAAFDVGFL+ EL L G FT Y+ +TD
Sbjct: 61 SNEFLKDKPKFAEVVDEILEYLQGAEIIIHNAAFDVGFLNKELELTGRPAFTSYVESVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MA++++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLVMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIAD 180
Query: 181 KINNSNNIETKIKIPN----NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ++ + +P+ LA+ EL H+ +L++IDK S G+ IWK
Sbjct: 181 DAQEGDESAVRLAPVDLSAFTLPVLLASEQELAAHDEVLAQIDKASGGKTIWK 233
>gi|206559631|ref|YP_002230392.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia J2315]
gi|421868919|ref|ZP_16300563.1| DNA polymerase III epsilon subunit [Burkholderia cenocepacia H111]
gi|444364452|ref|ZP_21164777.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia BC7]
gi|444369437|ref|ZP_21169189.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
K56-2Valvano]
gi|198035669|emb|CAR51556.1| DNA polymerase III, epsilon chain [Burkholderia cenocepacia J2315]
gi|358071055|emb|CCE51441.1| DNA polymerase III epsilon subunit [Burkholderia cenocepacia H111]
gi|443593085|gb|ELT61847.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia BC7]
gi|443599083|gb|ELT67391.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
K56-2Valvano]
Length = 244
Score = 259 bits (662), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 164/233 (70%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+ L++V ++E+IIHNA FD+GFLD E + LG FT++ + DTL
Sbjct: 62 EFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N + ++P+ +A+ +EL H L ++DK G C+W++
Sbjct: 182 DASADGGAANGKRVSLAALDLPVVVASDDELAAHQAQLDELDKSVKGTCVWRQ 234
>gi|340786658|ref|YP_004752123.1| DNA polymerase III subunit epsilon [Collimonas fungivorans Ter331]
gi|340551925|gb|AEK61300.1| DNA polymerase III epsilon subunit [Collimonas fungivorans Ter331]
Length = 247
Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 123/232 (53%), Positives = 161/232 (69%), Gaps = 4/232 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TGNN H YINP RDSE+ ALA+HGLTT
Sbjct: 4 RQIVLDTETTGLNPRTGDRVIEIGCVELLNRRLTGNNFHRYINPERDSEEGALAVHGLTT 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K KF+EI D Y +++IIHNA FD+GFLD E LLG F+ + + DTL
Sbjct: 64 AFLSDKPKFAEIFDELREYTRGAQVIIHNAPFDLGFLDAEYKLLGKGTFSGDVAGVIDTL 123
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A++++ GKRNSLDALCDRY IS HRTLHG LLD+ELLAEVYLAMTRGQ++ +
Sbjct: 124 VQAKEMYPGKRNSLDALCDRYGISNAHRTLHGALLDSELLAEVYLAMTRGQNSFSIDLGA 183
Query: 183 NNSNNIETKIKIP----NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + I ++ AN+ EL +H ++L+ +DK + G CIW++
Sbjct: 184 GHGDADGGGAALELLPLAGIVVRTANAEELAEHELVLNGLDKDAKGACIWRQ 235
>gi|161525206|ref|YP_001580218.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
17616]
gi|189350055|ref|YP_001945683.1| DNA polymerase III subunit epsilon [Burkholderia multivorans ATCC
17616]
gi|160342635|gb|ABX15721.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans ATCC
17616]
gi|189334077|dbj|BAG43147.1| DNA polymerase III epsilon subunit [Burkholderia multivorans ATCC
17616]
Length = 244
Score = 258 bits (660), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/233 (52%), Positives = 162/233 (69%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G RIIEIGCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARSGDRIIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI L++V +E+IIHNA FD+GFLD E +LLG F+++ + DTL
Sbjct: 62 EFLSDKPKFAEIAHQILDFVKGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N + ++P+ A + EL +H L +DK G C+W++
Sbjct: 182 DDAGGAGAANGQRVSLAALDLPVLAATAEELAEHQAQLDDLDKSVKGACVWRQ 234
>gi|221201955|ref|ZP_03574991.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
CGD2M]
gi|221204915|ref|ZP_03577932.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
gi|221213892|ref|ZP_03586865.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
gi|421470819|ref|ZP_15919169.1| DNA polymerase III, epsilon subunit, partial [Burkholderia
multivorans ATCC BAA-247]
gi|421480882|ref|ZP_15928475.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CF2]
gi|221166069|gb|EED98542.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD1]
gi|221175772|gb|EEE08202.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CGD2]
gi|221178038|gb|EEE10449.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans
CGD2M]
gi|400220323|gb|EJO50869.1| DNA polymerase III, epsilon subunit [Burkholderia multivorans CF2]
gi|400226888|gb|EJO56925.1| DNA polymerase III, epsilon subunit, partial [Burkholderia
multivorans ATCC BAA-247]
Length = 244
Score = 258 bits (659), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 122/233 (52%), Positives = 162/233 (69%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G RIIEIGCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARTGDRIIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI L++V +E+IIHNA FD+GFLD E +LLG F+++ + DTL
Sbjct: 62 EFLSDKPKFAEIAHQILDFVKGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N + ++P+ A + EL +H L +DK G C+W++
Sbjct: 182 DDAGGAGAANGQRVSLAALDLPVLAATAEELAEHQAQLDDLDKSVKGACVWRQ 234
>gi|186475632|ref|YP_001857102.1| DNA polymerase III subunit epsilon [Burkholderia phymatum STM815]
gi|184192091|gb|ACC70056.1| DNA polymerase III, epsilon subunit [Burkholderia phymatum STM815]
Length = 249
Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 161/231 (69%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G RIIEIGCVE+ NR++TGNNLH+YINP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARTGDRIIEIGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI D +++ ++E+IIHNA FD+GFLD E +LLG F++Y + DTL
Sbjct: 62 EFLSDKPKFAEIADTLRDFIQDAELIIHNAPFDIGFLDAEFALLGLPPFSQYCGEVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---- 178
+ A+ + GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 VRAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLG 181
Query: 179 KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ +++ + + + + A +EL +H +L +DK G +W+
Sbjct: 182 ETAADDAGGAKRVMLDTLELIVLAATDDELAEHEALLDGLDKSLKGTSVWR 232
>gi|413958472|ref|ZP_11397711.1| DNA polymerase III subunit epsilon [Burkholderia sp. SJ98]
gi|413941052|gb|EKS73012.1| DNA polymerase III subunit epsilon [Burkholderia sp. SJ98]
Length = 245
Score = 256 bits (655), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 121/231 (52%), Positives = 163/231 (70%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RIIEIGCVE+ NR++TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQLILDTETTGLNARTGDRIIEIGCVELVNRRLTGNNLHLYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI ++++ +E+IIHNA FDVGFLDME +LLG + + D+L
Sbjct: 62 EFLSDKPKFAEIAAQLRDFIAGAELIIHNAPFDVGFLDMEFALLGLPKIAETCAGVIDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L +
Sbjct: 122 AQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLG 181
Query: 181 KINNSNNIET-KIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
S ++ T +I + ++P+ A+++EL H +LS +DK G +W+
Sbjct: 182 DQPASGSVSTSRIAFDDLDLPVIAASADELAAHEALLSDLDKAMKGTSVWR 232
>gi|387901919|ref|YP_006332258.1| DNA polymerase III subunit epsilon [Burkholderia sp. KJ006]
gi|387576811|gb|AFJ85527.1| DNA polymerase III epsilon subunit [Burkholderia sp. KJ006]
Length = 244
Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust.
Identities = 120/232 (51%), Positives = 160/232 (68%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+ D ++V +E+IIHNA FD+GFLD E + LG F ++ + DTL
Sbjct: 62 EFLSDKPKFAEVADQIRDFVKGAELIIHNAPFDLGFLDAEFARLGLPPFIEHCDGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---- 178
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 AEAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 179 KPKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
P + +I + + ++P+ A+ +EL H L ++DK G C+W+
Sbjct: 182 DPGADGGTANGQRISLASLDLPVVAASDDELAAHQAQLDELDKSVKGTCVWR 233
>gi|351728503|ref|ZP_08946194.1| DNA polymerase III, epsilon subunit [Acidovorax radicis N35]
Length = 237
Score = 256 bits (653), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 123/235 (52%), Positives = 163/235 (69%), Gaps = 9/235 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ G RIIE+GCVE+ NR++TGNNLH Y NPGRDS + AL +HG+
Sbjct: 1 MTRQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPGRDSHEDALKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FLK+K KF+E+VD+ L Y+ +EIIIHNAAFDVGFL+ EL L+G F Y+ +TD
Sbjct: 61 SNEFLKDKPKFAEVVDDILQYLQGAEIIIHNAAFDVGFLNKELELVGRPAFRTYVESVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA++++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLAMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIAD 180
Query: 181 KINNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+S + +K+ N+P+ A+ E H +L++IDK S G+ IW+
Sbjct: 181 DAQDSGD---GLKVAAIDLRALNLPVLRASEQEQTAHAELLAQIDKASGGKTIWR 232
>gi|416918043|ref|ZP_11932398.1| DNA polymerase III subunit epsilon, partial [Burkholderia sp.
TJI49]
gi|325527245|gb|EGD04625.1| DNA polymerase III subunit epsilon [Burkholderia sp. TJI49]
Length = 243
Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 163/233 (69%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+VD ++V +E+IIHNA FD+GFLD E + LG FT++ + DTL
Sbjct: 62 EFLSDKPKFAEVVDQIRDFVKGAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK--- 179
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 180 -PKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + + ++P+ A+ +EL H L ++DK G C+W++
Sbjct: 182 DEAADGGAGGGQRVSLASLDLPVLAASDDELAAHQTQLDELDKSVKGTCVWRQ 234
>gi|365091921|ref|ZP_09329172.1| DNA polymerase III, epsilon subunit [Acidovorax sp. NO-1]
gi|363415658|gb|EHL22784.1| DNA polymerase III, epsilon subunit [Acidovorax sp. NO-1]
Length = 237
Score = 256 bits (653), Expect = 7e-66, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 167/235 (71%), Gaps = 9/235 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ G RIIE+GCVE+ NR++TGNNLH Y NPGR+S + AL +HG+
Sbjct: 1 MSRQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPGRESHEDALKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FLK+K +F+E+V++ L Y+ +EIIIHNAAFDVGFL+ EL L+G F Y+ +TD
Sbjct: 61 SNEFLKDKPRFAEVVEDILQYLQGAEIIIHNAAFDVGFLNKELELVGRPAFRTYVESVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA++++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+++TRGQ L
Sbjct: 121 TLAMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYISLTRGQDALLM-- 178
Query: 181 KINNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+++ N +K+ ++PI A+ E +QH +L++IDK S G+ IW+
Sbjct: 179 -VDDENVTSDGLKVATIDLRLLSLPILRASEQEQLQHADVLAQIDKASGGKTIWR 232
>gi|390575951|ref|ZP_10256031.1| DNA polymerase III subunit epsilon [Burkholderia terrae BS001]
gi|420256101|ref|ZP_14758962.1| DNA polymerase III, epsilon subunit [Burkholderia sp. BT03]
gi|389932092|gb|EIM94140.1| DNA polymerase III subunit epsilon [Burkholderia terrae BS001]
gi|398043815|gb|EJL36686.1| DNA polymerase III, epsilon subunit [Burkholderia sp. BT03]
Length = 249
Score = 255 bits (652), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 121/231 (52%), Positives = 161/231 (69%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G RIIEIGCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNAKSGDRIIEIGCVELVNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K KF+EI D ++V+++E+IIHNA FD+GFL+ E SLLG FT++ + DTL
Sbjct: 62 EFLRDKPKFAEIADALRDFVTDAELIIHNAPFDIGFLNAEFSLLGLPPFTEHCGEVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---NFK 179
+ A+ + GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 VRAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMIG 181
Query: 180 PKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++K+ + + A +EL +H +L +DK G +W+
Sbjct: 182 EAAAGHAGGAKRVKLDTLELVVLTATDDELAEHEALLDGLDKSVKGTSVWR 232
>gi|377821317|ref|YP_004977688.1| DNA polymerase III subunit epsilon [Burkholderia sp. YI23]
gi|357936152|gb|AET89711.1| DNA polymerase III, epsilon subunit [Burkholderia sp. YI23]
Length = 245
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 164/231 (70%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RIIEIGCVE+ NR++TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQLILDTETTGLNARTGDRIIEIGCVELVNRRLTGNNLHLYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI ++++++E+IIHNA FDVGFLDME + LG + + D+L
Sbjct: 62 EFLSDKPKFAEIAAQLRDFIADAELIIHNAPFDVGFLDMEFAQLGLPKVAQTCAGVIDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L +
Sbjct: 122 AQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLG 181
Query: 181 KINNSNNIET-KIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
S +I T +I + + ++P+ +A++ EL H +L+ +DK G +W+
Sbjct: 182 DQPASGSISTSRIALDDLDLPVIVASAEELAAHEAVLTDLDKALKGTSVWR 232
>gi|359798083|ref|ZP_09300658.1| DNA polymerase III subunit epsilon [Achromobacter arsenitoxydans
SY8]
gi|359363917|gb|EHK65639.1| DNA polymerase III subunit epsilon [Achromobacter arsenitoxydans
SY8]
Length = 241
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 119/231 (51%), Positives = 157/231 (67%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTGL+ GHRI+EIGCVE+ NR TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIIFDTETTGLDPAQGHRIVEIGCVELVNRMSTGNNLHIYLNPDRDSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +FS++ D F+ ++ +E+I HNAAFDV F + EL+ G Y +TD+L
Sbjct: 62 EFLSDKPRFSDVADEFVKFIQGAELIAHNAAFDVKFFNAELAKTGRGPINDYCETVTDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L AR + GKRNSLDALCDR+ IS HRTLHG LLD++LLAEV+LAMTRGQ L +
Sbjct: 122 LHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDD 181
Query: 181 KINNSNNIETKIKI-PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N N K + +P+ A+++EL +H L+ +DK NG C+W+K
Sbjct: 182 SANAGGNGVVLAKFDASGLPVLQASADELAEHETYLAALDKAVNGECVWRK 232
>gi|167587486|ref|ZP_02379874.1| DNA polymerase III subunit epsilon [Burkholderia ubonensis Bu]
Length = 242
Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARAGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+VD ++V +E+IIHNA FD+GFLD E + L FT++ + DTL
Sbjct: 62 EFLSDKPKFAEVVDQIRDFVKGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCAGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N + ++P+ A+ +EL H L +DK G C+W++
Sbjct: 182 DDAADGGAANGQRVSLASLDLPVLAASDDELAAHQAQLDGLDKSVKGTCVWRR 234
>gi|402566934|ref|YP_006616279.1| DNA polymerase III subunit epsilon [Burkholderia cepacia GG4]
gi|402248131|gb|AFQ48585.1| DNA polymerase III, epsilon subunit [Burkholderia cepacia GG4]
Length = 244
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+ D ++V ++E+IIHNA FD+GFLD E + L FT++ + DTL
Sbjct: 62 EFLSDKPKFAEVADQIRDFVKDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N + ++P+ A+ +EL H L ++DK G C+W+K
Sbjct: 182 DALADGGAANGQRVALASLDLPVVAASDDELAAHQTQLDELDKSVKGTCVWRK 234
>gi|170697939|ref|ZP_02889022.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
IOP40-10]
gi|170137105|gb|EDT05350.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria
IOP40-10]
Length = 244
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 120/232 (51%), Positives = 162/232 (69%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K KF+E+VD ++V +E+IIHNA FD+GFLD E + L FT++ + DTL
Sbjct: 62 EFLRDKPKFAEVVDQIRDFVKGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---- 178
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 179 KPKINNSNNIETKIKIPNNI-PIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ S ++ + + + P+ A+ +EL H L ++DK G C+W+
Sbjct: 182 DAGADGSAANGQRVSLASLVLPVLAASDDELAAHQTQLDELDKSVKGTCVWR 233
>gi|422322530|ref|ZP_16403571.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54]
gi|317402511|gb|EFV83078.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54]
Length = 240
Score = 254 bits (648), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 117/231 (50%), Positives = 156/231 (67%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTGL+ GHRI+EIGCVE+ NR TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIIFDTETTGLDPAQGHRIVEIGCVELVNRMATGNNLHIYLNPDRDSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+E+ D F+ ++ +E+I HNAAFDV F + EL+ G T+Y +TD+L
Sbjct: 62 EFLSDKPRFAEVADEFVKFIQGAELIAHNAAFDVKFFNAELAKTGRGPITEYCATVTDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
L AR + GKRNSLDALCDR+ IS HRTLHG LLD++LLAEV+LAMTRGQ L
Sbjct: 122 LHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDD 181
Query: 183 NNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N++ + + +P+ A+ EL +H L+ +DK G C+W+K
Sbjct: 182 NDTGAGGGVVLARFDASGLPVVKASEAELAEHETYLAALDKSVGGECVWRK 232
>gi|423015628|ref|ZP_17006349.1| DNA polymerase III subunit epsilon [Achromobacter xylosoxidans
AXX-A]
gi|338781383|gb|EGP45774.1| DNA polymerase III subunit epsilon [Achromobacter xylosoxidans
AXX-A]
Length = 240
Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/232 (51%), Positives = 156/232 (67%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTGL+ GHRI+EIGCVE+ NR TG NLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIIFDTETTGLDPAQGHRIVEIGCVELVNRMSTGRNLHIYLNPDRDSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F E+VD F+ +V +E+I HNAAFDV F + EL+ G T+Y ITD+L
Sbjct: 62 EFLSDKPRFGEVVDEFVQFVQGAELIAHNAAFDVKFFNAELAKTGRGPITEYCETITDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
L AR + GKRNSLDALCDR+ IS HRTLHG LLD++LLAEV+LAMTRGQ L
Sbjct: 122 LHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDD 181
Query: 183 NNSNN----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N++ + K + +P+ A+ EL +H L+ +DK G C+W+K
Sbjct: 182 NDAGAGGGVVLAKFDA-SGLPVVKASEAELAEHETYLAALDKSVGGECVWRK 232
>gi|421746352|ref|ZP_16184154.1| DNA polymerase III subunit epsilon [Cupriavidus necator HPC(L)]
gi|409775106|gb|EKN56634.1| DNA polymerase III subunit epsilon [Cupriavidus necator HPC(L)]
Length = 241
Score = 253 bits (647), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 120/232 (51%), Positives = 161/232 (69%), Gaps = 4/232 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG NLH+YINP RD + A+A+HGLT
Sbjct: 2 RQIVLDTETTGLNAATGDRLIEIGCVELVNRRLTGRNLHFYINPERDIDAGAIAVHGLTV 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+V ++V ++E+IIHNAAFD+GFLDME LLG F K++ + DTL
Sbjct: 62 EFLADKPKFAEVVHEIRDFVQDAELIIHNAAFDLGFLDMEFQLLGLPPFRKHVGSVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
L AR++ GKRNSLDALC+R +S HRTLHG LLDAELLAEVYLAMTRGQ++L
Sbjct: 122 LEARQMFPGKRNSLDALCERLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLVIDMMD 181
Query: 183 NNSNNIETKIKIPN----NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ + + +P+ +EL H +L ++DK S G+ +W++
Sbjct: 182 ASAGAGPAAVAATDLSALRLPVLEPTEDELAAHAAVLKELDKASGGKTVWQE 233
>gi|78065897|ref|YP_368666.1| DNA polymerase III subunit epsilon [Burkholderia sp. 383]
gi|77966642|gb|ABB08022.1| DNA polymerase III, epsilon subunit [Burkholderia sp. 383]
Length = 244
Score = 253 bits (647), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 119/232 (51%), Positives = 161/232 (69%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+ + ++V ++E+IIHNA FD+GFLD E + L FTK+ + DTL
Sbjct: 62 EFLSDKPKFAEVANQIRDFVQDAELIIHNAPFDLGFLDAEFARLDLPPFTKHCGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ N + ++P+ A+ +EL H L ++DK G C+W+
Sbjct: 182 DAGADGGAGNGQRVSLAALDLPVVAASDDELAAHQAQLDELDKSVKGTCVWR 233
>gi|134295347|ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4]
gi|134138504|gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4]
Length = 244
Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 120/232 (51%), Positives = 161/232 (69%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+ D ++V +E+IIHNA FD+GFLD E + LG F ++ + DTL
Sbjct: 62 EFLSDKPKFAEVADQIRDFVKGAELIIHNAPFDLGFLDAEFARLGLPPFIEHCDGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 AEAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 183 NNSNNIET----KIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + T +I + + ++P+ A+ +EL H L ++DK G C+W+
Sbjct: 182 DAGADGGTANGQRISLASLDLPVVAASDDELAAHQAQLDELDKSVKGTCVWR 233
>gi|427404071|ref|ZP_18894953.1| DNA polymerase III, epsilon subunit [Massilia timonae CCUG 45783]
gi|425717310|gb|EKU80275.1| DNA polymerase III, epsilon subunit [Massilia timonae CCUG 45783]
Length = 235
Score = 253 bits (645), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 164/228 (71%), Gaps = 1/228 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IE+GCVEI NR++TGNN H YINP R+S+++ALA+HGLTT
Sbjct: 2 RQIVLDTETTGLNPRTGDRVIEVGCVEIFNRKLTGNNFHRYINPERESDEAALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF EI + +V +E+IIHNA FD+GFL+ E + +G F ++ + DTL
Sbjct: 62 EFLSDKPKFHEIAEELREFVQGAEVIIHNAPFDLGFLNHEFTRIGLPPFVEHCSGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A+++H GKRNSLDALCDRY IS HR LHG LLD+ELLA+VYLAMTRGQ++L ++
Sbjct: 122 VHAKELHPGKRNSLDALCDRYEISNAHRKLHGALLDSELLADVYLAMTRGQNSLTMDVEV 181
Query: 183 NNSNNIETKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++N + +P I + A+++EL H+ +L +DK+ G C+W+
Sbjct: 182 ESANAGDALEVVPLGEIIVVAASADELAAHDDVLVGLDKNVKGSCVWR 229
>gi|445496894|ref|ZP_21463749.1| DNA polymerase III subunit epsilon [Janthinobacterium sp. HH01]
gi|444786889|gb|ELX08437.1| DNA polymerase III subunit epsilon [Janthinobacterium sp. HH01]
Length = 238
Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 122/227 (53%), Positives = 159/227 (70%), Gaps = 1/227 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+N G+RI+EIGCVE+ NR +TGNNLH+YINP R+SE+ AL +HGLTT
Sbjct: 2 RQIVLDTETTGINPKLGNRILEIGCVELNNRMLTGNNLHFYINPERESEEGALNVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF EIV+ Y+ +E+IIHNA FD+GFL+ E LL +F+ +I + DTL
Sbjct: 62 EFLSDKPKFREIVERLREYIQGAEVIIHNAPFDLGFLNHEFRLLNLPDFSSHIGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A+++H GKRNSLDALCDRY +S HR LHG LLDAELLA+VYLAMTRGQ++L +
Sbjct: 122 VQAKELHPGKRNSLDALCDRYGVSNSHRKLHGALLDAELLADVYLAMTRGQNSLGMDAEE 181
Query: 183 NNSNNIETKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
E +P +I A+ +EL H L+ +DK G+CIW
Sbjct: 182 EVVAGAELLEPVPLADIIFMPASEDELAAHAATLAGLDKAVKGQCIW 228
>gi|107022359|ref|YP_620686.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia AU
1054]
gi|116689306|ref|YP_834929.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia
HI2424]
gi|105892548|gb|ABF75713.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia AU
1054]
gi|116647395|gb|ABK08036.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
HI2424]
Length = 244
Score = 252 bits (643), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 162/233 (69%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+ L++V ++E+IIHNA FD+GFLD E + LG FT++ + DTL
Sbjct: 62 EFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N + ++ + A+ +EL H L ++DK G C+W++
Sbjct: 182 DAGADGGAANGKRVSLAALDLAVVTASEDELAAHQAQLDELDKSVKGTCVWRQ 234
>gi|311103923|ref|YP_003976776.1| DNA polymerase III subunit epsilon [Achromobacter xylosoxidans A8]
gi|310758612|gb|ADP14061.1| DNA polymerase III, epsilon subunit [Achromobacter xylosoxidans A8]
Length = 240
Score = 252 bits (643), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 118/231 (51%), Positives = 154/231 (66%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTGL+ GHRI+EIGCVE+ NR TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPDRDSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+++ D F+ ++ +E+I HNAAFDV F + EL+ G T Y +TD+L
Sbjct: 62 EFLSDKPRFADVADEFVKFIQGAELIAHNAAFDVKFFNAELAKTGRGPVTDYCETVTDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
L AR + GKRNSLDALCDR+ IS HRTLHG LLD++LLAEV+LAMTRGQ L
Sbjct: 122 LHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDD 181
Query: 183 NNS---NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
S N +E + +P+ A+ EL +H L+ +DK G C W+K
Sbjct: 182 GASAGGNGVELARFDASGLPVIKASEAELAEHETYLAALDKSVGGECTWRK 232
>gi|407938967|ref|YP_006854608.1| DNA polymerase III subunit epsilon [Acidovorax sp. KKS102]
gi|407896761|gb|AFU45970.1| DNA polymerase III subunit epsilon [Acidovorax sp. KKS102]
Length = 237
Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 121/235 (51%), Positives = 163/235 (69%), Gaps = 9/235 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ G RIIE+GCVE+ NR++TGNNLH Y NPGRDS + AL +HG+
Sbjct: 1 MSRQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHLYFNPGRDSHEDALKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FLK+K KF+++VD+ L Y+ +EIIIHNAAFDVGFL+ EL L+G F Y+ +TD
Sbjct: 61 SNEFLKDKPKFADVVDDILQYLQGAEIIIHNAAFDVGFLNKELELVGRPAFGTYVQSVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA++++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLAMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLITD 180
Query: 181 KINNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++S + +K+ +P+ A+ E H +L++IDK S G+ IW+
Sbjct: 181 DGHDSAD---GVKVAAIDLRGLALPVLRASEQEQAAHAEVLTQIDKASGGKTIWR 232
>gi|172060228|ref|YP_001807880.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria MC40-6]
gi|171992745|gb|ACB63664.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MC40-6]
Length = 244
Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 160/233 (68%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+VD ++V +E+IIHNA FD+GFLD E + L FT++ + DTL
Sbjct: 62 EFLSDKPKFAEVVDQIRDFVKGAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N + +P+ A+ +EL H L ++DK G C+W++
Sbjct: 182 DAGADGGAANGQRVSLASLALPVLAASDDELAAHQTQLDELDKSVKGTCVWRQ 234
>gi|293603370|ref|ZP_06685798.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter
piechaudii ATCC 43553]
gi|292818280|gb|EFF77333.1| DNA-directed DNA polymerase III epsilon subunit [Achromobacter
piechaudii ATCC 43553]
Length = 239
Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 119/232 (51%), Positives = 157/232 (67%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTGL+ GHRI+EIGCVE+ NR TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPDRDSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+++VD F+ ++ +E+I HNAAFDV F + EL+ G T+Y +TD+L
Sbjct: 62 EFLSDKPRFADVVDEFVKFIQGAELIAHNAAFDVKFFNAELAKTGRGPITEYCETVTDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
L AR + GKRNSLDALCDR+ IS HRTLHG LLD++LLAEV+LAMTRGQ L
Sbjct: 122 LHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDD 181
Query: 183 NNSNN----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N+ + K + IK A+ +EL +H L+ +DK G C+W+K
Sbjct: 182 NDGAGSDGIVLAKFDASGLVVIKAAD-DELAEHEAYLAALDKSVGGECVWRK 232
>gi|115351214|ref|YP_773053.1| DNA polymerase III subunit epsilon [Burkholderia ambifaria AMMD]
gi|115281202|gb|ABI86719.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria AMMD]
Length = 244
Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/233 (51%), Positives = 161/233 (69%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+VD ++V ++E+IIHNA FD+GFLD E + L FT++ + DTL
Sbjct: 62 EFLSDKPKFAEVVDQIRDFVKDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N + +P+ A+ +EL H L ++DK G C+W++
Sbjct: 182 DAGADGGAANGQRVSLASLALPVLSASDDELAAHQTQLDELDKSVKGTCVWRQ 234
>gi|171318244|ref|ZP_02907407.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
gi|171096588|gb|EDT41482.1| DNA polymerase III, epsilon subunit [Burkholderia ambifaria MEX-5]
Length = 244
Score = 251 bits (641), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 120/232 (51%), Positives = 161/232 (69%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNPRTGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+VD ++V ++E+IIHNA FD+GFLD E + L FT++ + DTL
Sbjct: 62 EFLSDKPKFAEVVDQIRDFVKDAELIIHNAPFDLGFLDAEFARLDLPPFTEHCGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ N + ++P+ A+ +EL H L ++DK G C+W+
Sbjct: 182 DAGADGGAANGQRVSLASLDLPVLAASDDELAAHQTQLDELDKSVKGTCVWR 233
>gi|412341421|ref|YP_006970176.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica 253]
gi|408771255|emb|CCJ56055.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica 253]
Length = 244
Score = 251 bits (641), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 156/231 (67%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTGL+ GHRI+EIGCVEI NR +TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPDRDSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+E+ + FL +++++E+I HNAAFDV F + EL +G + I D+L
Sbjct: 62 EFLADKPRFAEVAEQFLAFIADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENIVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L AR +H GKRNSLDALCDRY IS HRTLHG LLD++LLAEV+LAMTRGQ L +
Sbjct: 122 LHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDD 181
Query: 181 KINNSNNIETKIKIPNNIPIKLANSN-ELVQHNMILSKIDKHSNGRCIWKK 230
+ N+N K ++ LA S EL +H L +DK + G C W+
Sbjct: 182 QGANANGALVLGKFDASVLTVLAASEAELAEHAAYLQALDKAAGGACAWRA 232
>gi|209517197|ref|ZP_03266042.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
gi|209502333|gb|EEA02344.1| DNA polymerase III, epsilon subunit [Burkholderia sp. H160]
Length = 244
Score = 250 bits (639), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 116/231 (50%), Positives = 159/231 (68%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RI+E+GCVE+ NR++TGNNLH+YINP RDS+ ALA+HGLTT
Sbjct: 2 RQLILDTETTGLNPRGGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI+D F +++ ++++IIHNA FD+GFLD E +LLG + Y I DTL
Sbjct: 62 EFLSDKPKFAEIIDQFRDFIQDADLIIHNAPFDIGFLDTEFALLGLPPVSTYCGEIIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---NFK 179
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 AQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLG 181
Query: 180 PKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ++ + + + + A+ +E H +L +DK G +W+
Sbjct: 182 EAQTGGDTHAPRVALESLELVVVAASDDESAAHEAVLDDLDKAVKGTSVWR 232
>gi|395004816|ref|ZP_10388799.1| DNA polymerase III, epsilon subunit [Acidovorax sp. CF316]
gi|394317229|gb|EJE53823.1| DNA polymerase III, epsilon subunit [Acidovorax sp. CF316]
Length = 237
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 120/236 (50%), Positives = 163/236 (69%), Gaps = 9/236 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ G RIIE+GCVE+ NR++TGNNLH+Y NPGRDS + AL +HG+
Sbjct: 1 MTRQIVLDTETTGLSAEGGDRIIELGCVELLNRKLTGNNLHFYFNPGRDSHEDALKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FL++K KF+E+ + L Y+ +E+IIHNAAFDVGFL+ EL L G Y+ +TD
Sbjct: 61 SNEFLRDKPKFAELAPDILEYLQGAEVIIHNAAFDVGFLNKELELTGRPALKTYVGSVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA+++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ MTRGQ L
Sbjct: 121 TLAMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDALLV-- 178
Query: 181 KINNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
I+++++ I + +P+ A+ E+ H +L++IDK SNG+ IW+K
Sbjct: 179 -IDDTDDSAGGISVAAVDLGALVLPVLPASEQEVASHAEVLTQIDKASNGKTIWRK 233
>gi|254245771|ref|ZP_04939092.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
PC184]
gi|124870547|gb|EAY62263.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
PC184]
Length = 305
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 163/233 (69%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 63 RQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 122
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+ L++V ++E+IIHNA FD+GFLD E + LG FT++ + DTL
Sbjct: 123 EFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVIDTL 182
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 183 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 242
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ N + ++ + A+ +EL H L ++DK G C+W++
Sbjct: 243 DAGADGSAANGKRVSLAALDLAVVAASEDELAAHQAQLDELDKSVKGTCVWRQ 295
>gi|163854939|ref|YP_001629237.1| DNA polymerase III subunit epsilon [Bordetella petrii DSM 12804]
gi|163258667|emb|CAP40966.1| DNA polymerase III, epsilon chain [Bordetella petrii]
Length = 241
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 161/233 (69%), Gaps = 7/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTGL+ GHRI+EIGCVEI NR +TGN+LH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIIFDTETTGLDPSQGHRIVEIGCVEIVNRVVTGNHLHIYLNPDRDSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+++ FL ++ +E+I HNAAFDV F + ELS++G + ++Y +TD+L
Sbjct: 62 EFLADKPRFADVAQQFLEFIQGAELIAHNAAFDVKFFNAELSMIGRGDLSQYCALVTDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR ++ GKRNSLDALCDR+ IS HRTLHG LLD++LLAEV+LAMTRGQ L +
Sbjct: 122 QHARTLYPGKRNSLDALCDRHGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLI--DV 179
Query: 183 NNSNNIETKIKI-----PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++++ + +P+ A ++EL +H L+ +DK G C+W+K
Sbjct: 180 DDASQGGGAGIALGAFDSSVLPVLAATADELAEHEEYLASLDKSVGGACVWRK 232
>gi|73541877|ref|YP_296397.1| DNA polymerase III subunit epsilon [Ralstonia eutropha JMP134]
gi|72119290|gb|AAZ61553.1| DNA polymerase III, epsilon subunit [Ralstonia eutropha JMP134]
Length = 240
Score = 250 bits (639), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 116/231 (50%), Positives = 165/231 (71%), Gaps = 5/231 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG +LH+Y+NP RD ++ A+A+HG+T
Sbjct: 5 RQIVLDTETTGLNAATGDRLIEIGCVELVNRRLTGRHLHFYVNPERDIDEGAIAVHGITV 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+V+ ++V ++E+IIHNA FD+GFLDME LLG F +++ + DTL
Sbjct: 65 EFLADKPKFAEVVNEVRDFVQDAELIIHNAQFDLGFLDMEFRLLGLPPFREHVGSVIDTL 124
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
L AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ++L +
Sbjct: 125 LEARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLVID-ML 183
Query: 183 NNSNNIETKIKIPN----NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + + + +P+ A+ E+ +H +L ++DK S G+ +W+
Sbjct: 184 DGAEAADGSVAESDLSHIVLPVLYASEAEVSEHLAVLKQLDKASGGKTVWQ 234
>gi|152980051|ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
Marseille]
gi|151280128|gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp.
Marseille]
Length = 235
Score = 250 bits (638), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 122/230 (53%), Positives = 165/230 (71%), Gaps = 2/230 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G RIIEIGCVE+ NR++TGNN H+YINP RDSE+ ALA+HGLTT
Sbjct: 2 RQIVLDTETTGLNPRSGDRIIEIGCVELVNRRLTGNNFHHYINPERDSEEGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI F +Y+S +++IIHNA FD+GFLD EL + +F +++ + DTL
Sbjct: 62 EFLSDKPKFAEIAAEFRDYISGADVIIHNAPFDIGFLDAELKRVNTPSFKEHVGEVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A+++H GKRNSLDALCDRY IS HR LHG LLDAELLAEVYLAMTRGQ++L+
Sbjct: 122 VQAKEMHPGKRNSLDALCDRYGISNAHRALHGALLDAELLAEVYLAMTRGQNSLSMDLGA 181
Query: 183 NNSNNIETKIKIPNNIPIK--LANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ + +++ P++ A + EL H ++ +DK G+ +W+K
Sbjct: 182 SDVGSDGQVLEVVAIAPVQLLAATAEELAAHAAMVESLDKQVKGQSVWRK 231
>gi|118161395|gb|ABK64077.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
Length = 238
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 161/227 (70%), Gaps = 1/227 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G RI+EIG VE+ NR +TGNN H+YINP RDSE+ ALA+HGLTT
Sbjct: 2 RQIVLDTETTGLNPRTGDRILEIGAVELNNRMLTGNNFHHYINPERDSEEGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI + F +++ +E+IIHNA FD+GFL+ E L + ++ + DTL
Sbjct: 62 EFLSDKPKFAEIAEEFRAFIAGAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A+++H GKRNSLDALCDRY +S HR LHG LLD+ELLA+VYLAMTRGQ++L+ + ++
Sbjct: 122 VQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLSMEEEV 181
Query: 183 NNSNNIETKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +P + + A ++EL H ++ +DK + G+CIW
Sbjct: 182 EVAADGAVLEIVPLAEVIFQSATADELAAHEATIAGLDKAAKGQCIW 228
>gi|350544020|ref|ZP_08913686.1| DNA polymerase III epsilon subunit [Candidatus Burkholderia kirkii
UZHbot1]
gi|350528209|emb|CCD36249.1| DNA polymerase III epsilon subunit [Candidatus Burkholderia kirkii
UZHbot1]
Length = 245
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 157/233 (67%), Gaps = 8/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RIIEIGCVE+ NR+ TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQLILDTETTGLNAKTGDRIIEIGCVELINRRFTGNNLHIYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI ++++ +E+IIHNA FD+GFLDME +LLG ++ + D+L
Sbjct: 62 EFLSDKPKFAEIAAQLRDFITGAELIIHNAPFDIGFLDMEFALLGLPKVSEMCAGVIDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L +
Sbjct: 122 AQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI--DM 179
Query: 183 NNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
E P ++P+ A+ +EL H +L+ +DK G +W+
Sbjct: 180 LGDQPAEGATAAPRAAFNDLDLPVITASVDELSAHEAVLNDLDKALKGTSVWR 232
>gi|170732605|ref|YP_001764552.1| DNA polymerase III subunit epsilon [Burkholderia cenocepacia MC0-3]
gi|169815847|gb|ACA90430.1| DNA polymerase III, epsilon subunit [Burkholderia cenocepacia
MC0-3]
Length = 244
Score = 250 bits (638), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 163/233 (69%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARTGDRLIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+ L++V ++E+IIHNA FD+GFLD E + LG FT++ + DTL
Sbjct: 62 EFLSDKPKFAEVAHQILDFVKDAELIIHNAPFDLGFLDAEFARLGLPPFTEHCGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN-----LN 177
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ + L+
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDMLD 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ N + ++ + A+ +EL H L ++DK G C+W++
Sbjct: 182 DAGADGSAANGKRVSLAALDLAVVAASEDELAAHQAQLDELDKSVKGTCVWRQ 234
>gi|91784549|ref|YP_559755.1| DNA polymerase III subunit epsilon [Burkholderia xenovorans LB400]
gi|91688503|gb|ABE31703.1| DNA polymerase III, epsilon subunit [Burkholderia xenovorans LB400]
Length = 244
Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 118/231 (51%), Positives = 159/231 (68%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RI+E+GCVE+ NR++TGNNLH+YINP RDS+ ALA+HGLTT
Sbjct: 2 RQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF EI D F +++ +++IIHNA FD+GFLD+E +LLG + Y I DTL
Sbjct: 62 EFLSDKPKFGEIADQFRDFIQGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEIIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---NFK 179
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 ARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLG 181
Query: 180 PKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ++ I + ++ + A+ +EL H +L +DK G +W+
Sbjct: 182 ESHAGGDARAPRVAIDSLDLVVITASDDELAAHQALLDGLDKAIKGTSVWR 232
>gi|33591629|ref|NP_879273.1| DNA polymerase III subunit epsilon [Bordetella pertussis Tohama I]
gi|33598340|ref|NP_885983.1| DNA polymerase III subunit epsilon [Bordetella parapertussis 12822]
gi|33603250|ref|NP_890810.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica RB50]
gi|384202935|ref|YP_005588674.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS]
gi|408417162|ref|YP_006627869.1| DNA polymerase III subunit epsilon [Bordetella pertussis 18323]
gi|410474358|ref|YP_006897639.1| DNA polymerase III subunit epsilon [Bordetella parapertussis Bpp5]
gi|427816260|ref|ZP_18983324.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica 1289]
gi|33566898|emb|CAE39114.1| DNA polymerase III, epsilon chain [Bordetella parapertussis]
gi|33571272|emb|CAE44737.1| DNA polymerase III, epsilon chain [Bordetella pertussis Tohama I]
gi|33577374|emb|CAE34639.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica RB50]
gi|332381049|gb|AEE65896.1| DNA polymerase III subunit epsilon [Bordetella pertussis CS]
gi|401779332|emb|CCJ64846.1| DNA polymerase III, epsilon chain [Bordetella pertussis 18323]
gi|408444468|emb|CCJ51216.1| DNA polymerase III, epsilon chain [Bordetella parapertussis Bpp5]
gi|410567260|emb|CCN24831.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica 1289]
Length = 244
Score = 249 bits (637), Expect = 4e-64, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 155/231 (67%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTGL+ GHRI+EIGCVEI NR +TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPDRDSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+E+ + FL +++++E+I HNAAFDV F + EL +G + I D+L
Sbjct: 62 EFLADKPRFAEVAEQFLAFIADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENIVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L AR +H GKRNSLDALCDRY IS HRTLHG LLD++LLAEV+LAMTRGQ L +
Sbjct: 122 LHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDD 181
Query: 181 KINNSNNIETKIKIPNNIPIKLANSN-ELVQHNMILSKIDKHSNGRCIWKK 230
+ N+N K ++ LA S EL +H L +DK G C W+
Sbjct: 182 QGANANGALVLGKFDASVLTVLAASEAELAEHAAYLQALDKAVGGACAWRA 232
>gi|385208675|ref|ZP_10035543.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
gi|385181013|gb|EIF30289.1| DNA polymerase III, epsilon subunit [Burkholderia sp. Ch1-1]
Length = 244
Score = 249 bits (636), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 117/231 (50%), Positives = 158/231 (68%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RI+E+GCVE+ NR++TGNNLH+YINP RDS+ ALA+HGLTT
Sbjct: 2 RQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF EI D F +++ +++IIHNA FD+GFLD+E +LLG + Y I DTL
Sbjct: 62 EFLSDKPKFGEIADQFRDFIQGADLIIHNAPFDIGFLDVEFALLGLPPVSTYCGEIIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---NFK 179
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 ARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLG 181
Query: 180 PKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ++ I + ++ + A+ +E H +L +DK G +W+
Sbjct: 182 ESHAGGDARAPRVAIDSLDLVVIAASDDEFAAHQAVLDGLDKAIKGTSVWR 232
>gi|238026771|ref|YP_002911002.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1]
gi|237875965|gb|ACR28298.1| DNA polymerase III subunit epsilon [Burkholderia glumae BGR1]
Length = 240
Score = 249 bits (635), Expect = 8e-64, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 155/233 (66%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G RIIEIGCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARAGDRIIEIGCVEMLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI ++V E+IIHNA FD+GF+D EL LG ++ + DTL
Sbjct: 62 EFLSDKPKFAEIAQALCDFVRGGELIIHNAPFDIGFIDAELERLGMPPLLEHCNGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---- 178
+ A+ + GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 VQAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLG 181
Query: 179 KPKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+++ + ++P+ A+ EL H L +DK G C+W++
Sbjct: 182 DTGDRGGETGGSRVSFASLDLPVIAASEQELAAHQAQLDDLDKSVKGACVWRQ 234
>gi|307730502|ref|YP_003907726.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1003]
gi|307585037|gb|ADN58435.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1003]
Length = 244
Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 118/231 (51%), Positives = 158/231 (68%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RI+E+GCVE+ NR++TGNNLH+YINP RDS+ ALA+HGLTT
Sbjct: 2 RQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI D F +++ +++IIHNA FD+GFLD E +LLG + Y I DTL
Sbjct: 62 EFLSDKPKFAEIADQFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEIIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 ARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLG 181
Query: 183 NNSNNIET---KIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ E ++ I + + + A+ E+ H +L +DK G +W+
Sbjct: 182 ESHAGGEAHAPRVAIESLELVVIAASDEEVAAHQAVLDGLDKAIKGTSVWR 232
>gi|410421732|ref|YP_006902181.1| DNA polymerase III subunit epsilon [Bordetella bronchiseptica
MO149]
gi|427819772|ref|ZP_18986835.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica D445]
gi|427825228|ref|ZP_18992290.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica Bbr77]
gi|408449027|emb|CCJ60713.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica MO149]
gi|410570772|emb|CCN18970.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica D445]
gi|410590493|emb|CCN05583.1| DNA polymerase III, epsilon chain [Bordetella bronchiseptica Bbr77]
Length = 244
Score = 249 bits (635), Expect = 9e-64, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 154/231 (66%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTGL+ GHRI+EIGCVEI NR +TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIIFDTETTGLDPAQGHRIVEIGCVEIVNRMVTGNNLHLYLNPDRDSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+E+ FL +++++E+I HNAAFDV F + EL +G + I D+L
Sbjct: 62 EFLADKPRFAEVAGQFLAFIADAELIAHNAAFDVKFFNAELQRIGRDPLNTHCENIVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L AR +H GKRNSLDALCDRY IS HRTLHG LLD++LLAEV+LAMTRGQ L +
Sbjct: 122 LHARSLHPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDD 181
Query: 181 KINNSNNIETKIKIPNNIPIKLANSN-ELVQHNMILSKIDKHSNGRCIWKK 230
+ N+N K ++ LA S EL +H L +DK G C W+
Sbjct: 182 QGANANGALVLGKFDASVLTVLAASEAELAEHAAYLQALDKAVGGACAWRA 232
>gi|121609336|ref|YP_997143.1| DNA polymerase III subunit epsilon [Verminephrobacter eiseniae
EF01-2]
gi|121553976|gb|ABM58125.1| DNA polymerase III, epsilon subunit [Verminephrobacter eiseniae
EF01-2]
Length = 237
Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 120/232 (51%), Positives = 161/232 (69%), Gaps = 3/232 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ G RIIE+GCVE+ NR++TGNNLH Y NPGRDS + AL +HG+
Sbjct: 1 MPRQIVLDTETTGLSADSGDRIIELGCVELLNRKLTGNNLHLYFNPGRDSHEDALKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FLK+K +F+E+VD+ L Y+ +E+IIHNAAFDVGFL+ EL L G+ + R+TD
Sbjct: 61 SNEFLKDKPRFAELVDDILQYLQGAELIIHNAAFDVGFLNKELELAGHPALAHCVERVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA++++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYIHLTRGQKALLIAD 180
Query: 181 KINNSNNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ S + I + +P+ AN+ E H +L++IDK S G+ IW+
Sbjct: 181 EAQPSATDLPLLPIDLHALVLPVLHANAQEQQAHAEVLAQIDKASGGKTIWR 232
>gi|323526835|ref|YP_004228988.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1001]
gi|407714278|ref|YP_006834843.1| DNA polymerase III subunit epsilon [Burkholderia phenoliruptrix
BR3459a]
gi|323383837|gb|ADX55928.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1001]
gi|407236462|gb|AFT86661.1| DNA polymerase III subunit epsilon [Burkholderia phenoliruptrix
BR3459a]
Length = 244
Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 118/233 (50%), Positives = 158/233 (67%), Gaps = 8/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RIIE+GCVE+ NR++TGNNLH+YINP RDS+ ALA+HGLTT
Sbjct: 2 RQLILDTETTGLNARTGDRIIEVGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI D F +++ +++IIHNA FD+GFLD E +LLG + + I DTL
Sbjct: 62 EFLSDKPKFAEIADEFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEIIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L +
Sbjct: 122 ARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVI--DM 179
Query: 183 NNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ + P ++ + A+ EL H +L +DK G +W+
Sbjct: 180 LGESHAGGEAHAPRVALDSLDLVVIAASDEELAAHQAVLDGLDKAIKGTSVWR 232
>gi|421484937|ref|ZP_15932502.1| DNA polymerase III subunit epsilon [Achromobacter piechaudii HLE]
gi|400196765|gb|EJO29736.1| DNA polymerase III subunit epsilon [Achromobacter piechaudii HLE]
Length = 240
Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 117/231 (50%), Positives = 156/231 (67%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTGL+ GHRI+EIGCVE+ NR TGNNLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIIFDTETTGLDPAQGHRIVEIGCVEMVNRMSTGNNLHIYLNPDRDSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+++ D F+ ++ +E+I HNAAFDV F + EL+ G T+Y +TD+L
Sbjct: 62 EFLSDKPRFADVADEFVKFIQGAELIAHNAAFDVKFFNAELAKTGRGLITEYCETVTDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
L AR + GKRNSLDALCDR+ IS HRTLHG LLD++LLAEV+LAMTRGQ L
Sbjct: 122 LHARSLFPGKRNSLDALCDRFGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDD 181
Query: 183 NN---SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N+ S+ I + + + A+ EL +H L+ +DK G C+W+K
Sbjct: 182 NDGAGSDGIVLARFDASGLVVVKASDEELAEHETYLAALDKSVGGECVWRK 232
>gi|71726088|gb|AAZ39211.1| DNA polymerase III epsilon subunit [Janthinobacterium lividum]
Length = 238
Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/227 (50%), Positives = 160/227 (70%), Gaps = 1/227 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G RI+EIG VE+ NR +TGNN H YINP RDSE+ ALA+HGLTT
Sbjct: 2 RQIVLDTETTGLNPRTGDRILEIGGVELNNRMLTGNNFHQYINPERDSEEGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI + F +++ +E+IIHNA FD+GFL+ E L + ++ + DTL
Sbjct: 62 EFLSDKPKFAEIAEEFRAFIAGAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A+++H GKRNSLDALCDRY +S HR LHG LLD+ELLA+VYLAMTRGQ++L+ + ++
Sbjct: 122 VQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLSMEEEV 181
Query: 183 NNSNNIETKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +P + + A ++EL H ++ +DK + G+CIW
Sbjct: 182 EVAADGAALEIVPLAEVIFQSATADELAAHEASIAGLDKAAKGQCIW 228
>gi|295677150|ref|YP_003605674.1| DNA polymerase III subunit epsilon [Burkholderia sp. CCGE1002]
gi|295436993|gb|ADG16163.1| DNA polymerase III, epsilon subunit [Burkholderia sp. CCGE1002]
Length = 244
Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 115/231 (49%), Positives = 158/231 (68%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RI+E+GCVE+ NR++TGNNLH+YINP RDS+ ALA+HGLTT
Sbjct: 2 RQLILDTETTGLNARGGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI+D F +++ +++IIHNA FD+GFLD E +LLG + + I DTL
Sbjct: 62 EFLSDKPKFAEIIDQFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEIIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---NFK 179
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 AQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLG 181
Query: 180 PKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ++ + + + + A+ +E H +L +DK G +W+
Sbjct: 182 EAQAGGDTDAPRVALDSLELVVIAASDDESAAHEAVLDDLDKAIKGASVWR 232
>gi|187924850|ref|YP_001896492.1| DNA polymerase III subunit epsilon [Burkholderia phytofirmans PsJN]
gi|187716044|gb|ACD17268.1| DNA polymerase III, epsilon subunit [Burkholderia phytofirmans
PsJN]
Length = 244
Score = 247 bits (631), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 116/231 (50%), Positives = 159/231 (68%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RI+E+GCVE+ NR++TGNNLH+YINP R+S+ ALA+HGLTT
Sbjct: 2 RQLILDTETTGLNARTGDRILELGCVEMVNRRLTGNNLHFYINPERESDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI D F +++ ++++IIHNA FD+GFLD E +LLG Y I DTL
Sbjct: 62 EFLSDKPKFAEIADQFRDFIQDADLIIHNAPFDIGFLDAEFALLGLPPVKTYCGEIIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---NFK 179
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 ARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLG 181
Query: 180 PKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ++ + + ++ + A+ +EL H +L +DK G +W+
Sbjct: 182 ESHAGGDAHAPRVALSSLDLIVVTASDDELAAHQAVLDGLDKAIKGTSVWR 232
>gi|332286832|ref|YP_004418743.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
gi|330430785|gb|AEC22119.1| DNA polymerase III subunit epsilon [Pusillimonas sp. T7-7]
Length = 236
Score = 247 bits (631), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 117/230 (50%), Positives = 159/230 (69%), Gaps = 3/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ GHR++E+ CVE++NR +TG +LH Y+NPGRDS+ ALA+HGLTT
Sbjct: 2 RQIVLDTETTGLDPAQGHRVVELACVEMENRSLTGRHLHLYLNPGRDSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +F E+ ++YV ++E+IIHNAAFDV FL+ EL+ G F +ITD+L
Sbjct: 62 EFLSGHPRFEEVAQQLVDYVKDAEVIIHNAAFDVKFLNAELTRAGLPVFNSLCGKITDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L AR++H GKRNSLDALC+RY IS HRTLHG LLD+ELLA+V+LAMTRGQ L +F+
Sbjct: 122 LHARELHPGKRNSLDALCERYGISNAHRTLHGALLDSELLADVWLAMTRGQDALLMDFED 181
Query: 181 K-INNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+N + + + + + LA EL HN L+ +DK + C+W+
Sbjct: 182 DGSTGANGMRLEQFDASTLKVVLAGEAELQAHNDYLAGLDKTAGTPCVWR 231
>gi|337279493|ref|YP_004618965.1| DNA polymerase III subunit epsilon [Ramlibacter tataouinensis
TTB310]
gi|334730570|gb|AEG92946.1| Candidate DNA polymerase III epsilon subunit [Ramlibacter
tataouinensis TTB310]
Length = 243
Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 116/230 (50%), Positives = 162/230 (70%), Gaps = 2/230 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ G RIIEIGCVE+ R++TGNN H+Y+NP RDS + AL +HG++
Sbjct: 2 RQIVLDTETTGLSAEGGDRIIEIGCVELVGRKLTGNNRHWYLNPERDSHEDALKVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K KF+ I D L+Y++ +EIIIHNAAFDVGFL+ EL LLG F Y+ +TDTL
Sbjct: 62 EFLRDKPKFAAIADELLDYLAGAEIIIHNAAFDVGFLNKELELLGRRAFKTYVGSVTDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA++++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 122 AMAKEMYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIDVGD 181
Query: 183 NNS-NNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+++ + K+ + +P+ LA+ E H+ +L ++DK S G+ +W++
Sbjct: 182 DHAVQGVAVKVDLSAFTLPVLLASEQEAAAHDEVLKQLDKASGGKTLWRQ 231
>gi|395762695|ref|ZP_10443364.1| DNA polymerase III subunit epsilon [Janthinobacterium lividum PAMC
25724]
Length = 237
Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 114/226 (50%), Positives = 158/226 (69%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G RI+EIG VE+ NR +TGNN H+YINP RDSE+ ALA+HGLTT
Sbjct: 2 RQIVLDTETTGLNPRTGDRILEIGAVELNNRMLTGNNFHHYINPERDSEEGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF++I + Y++ +E+IIHNA FD+GFL+ E L + ++ + DTL
Sbjct: 62 EFLSDKPKFAQIAEQLRAYIAGAELIIHNAPFDIGFLNAEFKRLNLPPVHEQVHGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A+++H GKRNSLDALCDRY +S HR LHG LLD+ELLA+VYLAMTRGQ++L+ +
Sbjct: 122 VQAKEMHPGKRNSLDALCDRYGVSNAHRKLHGALLDSELLADVYLAMTRGQNSLSMEEVE 181
Query: 183 NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
++ +I + + A ++EL H ++ +DK + G+CIW
Sbjct: 182 VAADGAVLEIVPLAEVIFQSATADELAAHEATIAGLDKAAKGQCIW 227
>gi|300703774|ref|YP_003745376.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum
CFBP2957]
gi|299071437|emb|CBJ42756.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum
CFBP2957]
Length = 242
Score = 247 bits (630), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 156/231 (67%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG NLH+YINP R+ + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPEREIDAGAMAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+F+ +K KF+E+V +YV +E IIHNAAFD+GFLDME LG +F +++ DTL
Sbjct: 62 EFVADKPKFAEVVAEIRDYVQGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGHIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ+ L +
Sbjct: 122 LEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDMLE 181
Query: 181 KINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + +PI LA E H +L +IDK S G+ +W +
Sbjct: 182 GGETAATEAAAVDLSGLELPILLATEVEATAHATVLKEIDKASGGKTVWSR 232
>gi|330816255|ref|YP_004359960.1| DNA polymerase III subunit epsilon [Burkholderia gladioli BSR3]
gi|327368648|gb|AEA60004.1| DNA polymerase III, epsilon subunit [Burkholderia gladioli BSR3]
Length = 240
Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 116/233 (49%), Positives = 157/233 (67%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G RIIEIGCVE+ NR++TGNNLH+Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIILDTETTGLNARTGDRIIEIGCVEMLNRRLTGNNLHFYVNPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+ ++V +E+IIHNA FD+GF+D E +G ++ + DTL
Sbjct: 62 EFLSDKPKFAEVAHAICDFVRGAELIIHNAPFDIGFIDAEFERVGLPPLNQHCDGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
+ A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L +
Sbjct: 122 VQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLG 181
Query: 181 KINNSNNIETKIKIP---NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ ++ +P+ A+ +EL H L +DK G C+W+K
Sbjct: 182 DGDDEGGASGAARVSLATLALPVLAASEDELAAHLAQLDDLDKSVKGACVWRK 234
>gi|170695448|ref|ZP_02886593.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
gi|170139639|gb|EDT07822.1| DNA polymerase III, epsilon subunit [Burkholderia graminis C4D1M]
Length = 247
Score = 246 bits (628), Expect = 5e-63, Method: Compositional matrix adjust.
Identities = 117/231 (50%), Positives = 159/231 (68%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RI+E+GCVE+ NR++TGNNLH+YINP RDS+ ALA+HGLTT
Sbjct: 2 RQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF++I D +++ +++IIHNA FD+GFLD E +LLG + Y I DTL
Sbjct: 62 EFLSDKPKFADIADQIRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEIIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
A+++ GKRNSLDALCDR+ IS HRTLHG LLD+ELLAEVYLAMTRGQ +L
Sbjct: 122 ARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDMLG 181
Query: 183 NNSNNIET---KIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ E ++ I + ++ + A+ +EL H +L +DK G +W+
Sbjct: 182 ESHAGGEAHAPRVAIESLDLVVIAASDDELAAHQEVLDGLDKAIRGTSVWR 232
>gi|329900785|ref|ZP_08272589.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
IMCC9480]
gi|327549374|gb|EGF33942.1| DNA polymerase III epsilon subunit [Oxalobacteraceae bacterium
IMCC9480]
Length = 235
Score = 246 bits (627), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 117/230 (50%), Positives = 159/230 (69%), Gaps = 3/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG N H Y+NP RDSE+ ALA+HGLTT
Sbjct: 2 RQIVLDTETTGLNPRSGDRVIEIGCVEMINRRLTGKNFHCYLNPERDSEEGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K KF+ + +Y+S +E+IIHNA FDVGFLD E L F + + DTL
Sbjct: 62 EFLRDKPKFAAVAAELRDYISGAEVIIHNAPFDVGFLDAEFKRLDIPLFNTQVSGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ A+++H GKRNSLD+LCDRY +S HRTLHG LLDAELLAEVYLAMTRGQ++L+ +
Sbjct: 122 VQAKEMHPGKRNSLDSLCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMELDD 181
Query: 183 NNS---NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + ++ +I + A++ EL +H + L+ +DK G +W+
Sbjct: 182 GDQAGESGAHLELVPLADILVLPASAEELGEHELALTALDKEMRGTSLWR 231
>gi|83749368|ref|ZP_00946363.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
gi|207742873|ref|YP_002259265.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
IPO1609]
gi|83723945|gb|EAP71128.1| DNA polymerase III, epsilon chain [Ralstonia solanacearum UW551]
gi|206594267|emb|CAQ61194.1| dna polymerase III (epsilon chain) protein [Ralstonia solanacearum
IPO1609]
Length = 242
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 156/231 (67%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG NLH+YINP R+ + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPEREIDPGAMAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+F+ +K KF+E+V +YV +E IIHNAAFD+GFLDME LG +F +++ DTL
Sbjct: 62 EFVADKPKFAEVVAEIRDYVQGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGHIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ+ L +
Sbjct: 122 LEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDMLE 181
Query: 181 KINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + +PI LA E H +L +IDK S G+ +W +
Sbjct: 182 GGETAATEAAAVDLSGLELPILLATEVEAAAHATVLKEIDKASGGKTVWSR 232
>gi|319762901|ref|YP_004126838.1| DNA polymerase III subunit epsilon [Alicycliphilus denitrificans
BC]
gi|330824980|ref|YP_004388283.1| DNA polymerase III subunit epsilon [Alicycliphilus denitrificans
K601]
gi|317117462|gb|ADU99950.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
BC]
gi|329310352|gb|AEB84767.1| DNA polymerase III, epsilon subunit [Alicycliphilus denitrificans
K601]
Length = 242
Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 163/235 (69%), Gaps = 9/235 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ +G RIIE+GCVE+ +R++TGNNLH Y+NP RDS + AL +HG+
Sbjct: 1 MPRQIVLDTETTGLSAENGDRIIELGCVELLSRKLTGNNLHLYLNPERDSHEDALKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FL++K KF+E+V + L Y+ +E+IIHNA+FDVGFLD EL L G ++ + D
Sbjct: 61 SNEFLRDKPKFAEVVHDILEYLRGAELIIHNASFDVGFLDKELELAGLPPLAAHVDGVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA+++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ MTRGQ L
Sbjct: 121 TLAMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDALLI-- 178
Query: 181 KINNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ + N E +K+ +P+ LA+ EL +H +L++IDK S G+ IW+
Sbjct: 179 -MDETANGEGGVKVAAVDLSRLVLPVLLASDQELAEHEDLLAQIDKSSAGKTIWR 232
>gi|430805025|ref|ZP_19432140.1| DNA polymerase III subunit epsilon [Cupriavidus sp. HMR-1]
gi|429502726|gb|ELA01032.1| DNA polymerase III subunit epsilon [Cupriavidus sp. HMR-1]
Length = 241
Score = 243 bits (621), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 117/230 (50%), Positives = 158/230 (68%), Gaps = 3/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG +LH+Y+NP RD + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLNHATGDRLIEIGCVELVNRRLTGRHLHFYVNPERDIHEDAIAVHGITL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K KF+EIV+ ++V ++E+IIHNA FD+GFLDME L F ++ + DTL
Sbjct: 62 DFLADKPKFAEIVNEVRDFVQDAELIIHNAPFDLGFLDMEFQRLDLPPFRQHASSVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ++L
Sbjct: 122 REARQMFPGKRNSLDALCDRLGVSNSHRTLHGALLDAELLAEVYLAMTRGQNSLVIDMLD 181
Query: 183 NNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + ET+ +P+ LA+ E+ H +L ++DK S G+ +W+
Sbjct: 182 GAATDGETRSTADLSAMTLPVLLASEEEISAHMGVLKELDKASGGKTVWQ 231
>gi|94311147|ref|YP_584357.1| DNA polymerase III subunit epsilon [Cupriavidus metallidurans CH34]
gi|93354999|gb|ABF09088.1| DNA polymerase III epsilon subunit [Cupriavidus metallidurans CH34]
Length = 241
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 117/231 (50%), Positives = 160/231 (69%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG +LH+Y+NP RD + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLNHATGDRLIEIGCVELVNRRLTGRHLHFYVNPERDIHEDAIAVHGITL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K KF+EIV++ ++V ++E+IIHNA FD+GFLDME L F ++ + DTL
Sbjct: 62 DFLADKPKFAEIVNDVRDFVQDAELIIHNAPFDLGFLDMEFQRLDLPPFRQHASNVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ++L
Sbjct: 122 REARQMFPGKRNSLDALCDRLGVSNSHRTLHGALLDAELLAEVYLAMTRGQNSLVIDMLD 181
Query: 183 NNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + ET+ +P+ LA+ E+ H +L ++DK S G+ +W++
Sbjct: 182 GAATDGETRSTADLSAMTLPVLLASEAEISAHMGVLKELDKASGGKTVWQE 232
>gi|187479401|ref|YP_787426.1| DNA polymerase III subunit epsilon [Bordetella avium 197N]
gi|115423988|emb|CAJ50541.1| DNA polymerase III, epsilon chain [Bordetella avium 197N]
Length = 243
Score = 243 bits (621), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 149/229 (65%), Gaps = 2/229 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTGL+ GHRI+EIGCVE+ NR +TG NLH Y+NP RDS+ ALA+HGLTT
Sbjct: 2 RQIIFDTETTGLDPAQGHRIVEIGCVELVNRMVTGRNLHLYLNPDRDSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K +F +I + F+ ++ +E+I HNA+FDV F + EL +G Y +TD+L
Sbjct: 62 AFLSDKPRFGDIAEAFIQFIEGAELIAHNASFDVKFFNAELQKVGRKTLDNYCASVTDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR + GKRNSLDALCDRY IS HRTLHG LLD++LLAEV+LAMTRGQ L
Sbjct: 122 AHARTLFPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDD 181
Query: 183 NNS--NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
N + N I + +P+ A +L +H L+ +DK G C+W+
Sbjct: 182 NQAGGNRIALAAFDASVLPVVAAAGEDLTEHEAYLAALDKAVGGSCLWR 230
>gi|374366283|ref|ZP_09624364.1| DNA polymerase III subunit epsilon [Cupriavidus basilensis OR16]
gi|373102067|gb|EHP43107.1| DNA polymerase III subunit epsilon [Cupriavidus basilensis OR16]
Length = 240
Score = 243 bits (620), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 112/232 (48%), Positives = 161/232 (69%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ G R+IEIGCVE+ NR++TG +LH+Y+NP RD ++ A+A+HG+T
Sbjct: 2 RQIVLDTETTGLSAATGDRLIEIGCVELLNRRLTGRHLHFYVNPERDIDEGAIAVHGITV 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K KF+++V+ ++V ++E+IIHNA FD+GFLDME L+G F ++ + DTL
Sbjct: 62 DFLADKPKFAQVVNEIRDFVQDAELIIHNAPFDLGFLDMEFKLVGLPPFREHAGNVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ++L +
Sbjct: 122 REARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLVID-ML 180
Query: 183 NNSNNIETKIKIPN----NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + ++P+ +A+ E H +L +++K S G+ +WK+
Sbjct: 181 DGGGGESDAVAATDLSRLDLPVLMASEAEATAHLAVLKQLEKASGGKVVWKE 232
>gi|71907224|ref|YP_284811.1| DNA polymerase III subunit epsilon [Dechloromonas aromatica RCB]
gi|71846845|gb|AAZ46341.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
subunit [Dechloromonas aromatica RCB]
Length = 238
Score = 243 bits (620), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 114/228 (50%), Positives = 155/228 (67%), Gaps = 2/228 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ GHRIIE+ C+E+ NR+ TG++LH YINP R+ ++ A A+HG+T
Sbjct: 2 RQIVLDTETTGLDPRSGHRIIEVACIEMVNRRFTGHHLHKYINPEREIDEGAQAVHGITL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF++I D FL +++ +E+IIHNA FD+GFL+ EL LG + DTL
Sbjct: 62 EFLADKPKFADIADEFLEFINGAELIIHNAPFDIGFLNAELDRLGRVPVGTICNGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA+++H GKRNSLDALC+RY I RTLHG LLD ELLA+V+LAMTRGQ++L +P
Sbjct: 122 RMAKELHPGKRNSLDALCERYEIDNSSRTLHGALLDTELLADVFLAMTRGQNSLMIEPDA 181
Query: 183 NNSNNIETKIKIPNNIP--IKLANSNELVQHNMILSKIDKHSNGRCIW 228
NI ++ P ++ A E+ +H +L+ IDK S G CIW
Sbjct: 182 EPRPNIGADGQVRERKPLSVRRAAPEEIAEHETVLAAIDKESKGACIW 229
>gi|241763763|ref|ZP_04761810.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
gi|241366982|gb|EER61378.1| DNA polymerase III, epsilon subunit [Acidovorax delafieldii 2AN]
Length = 237
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 116/232 (50%), Positives = 157/232 (67%), Gaps = 3/232 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ G RIIEIGCVE+ +R++TGNN H+Y+NP RDS + AL +HG+
Sbjct: 1 MSRQIVLDTETTGLSAEGGDRIIEIGCVELVSRKLTGNNKHFYLNPERDSHEDALKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FL++K KF+ + D L Y+ +E+IIHNAAFDVGFL+ EL LLG ++ +TD
Sbjct: 61 SNEFLRDKPKFAAVADELLEYLQGAEVIIHNAAFDVGFLNKELELLGRPALHTFVDSVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA++++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLAMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINLTRGQDALLIID 180
Query: 181 KINNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+S ++I +P+ AN E+ H +L +IDK S G+ IW+
Sbjct: 181 DAQDSAGGGHFVQIDLRSFTLPVLPANEQEIAAHEEVLVQIDKASGGKTIWR 232
>gi|194290095|ref|YP_002006002.1| DNA polymerase III subunit epsilon [Cupriavidus taiwanensis LMG
19424]
gi|193223930|emb|CAQ69939.1| DNA polymerase III epsilon subunit [Cupriavidus taiwanensis LMG
19424]
Length = 246
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 115/231 (49%), Positives = 157/231 (67%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG +LH+Y+NP RD ++ A+A+HG+T
Sbjct: 5 RQIVLDTETTGLNAATGDRLIEIGCVELMNRRLTGRHLHFYVNPERDIDEGAIAVHGITV 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+E+V + +V ++E+IIHNA FD+GFLDME LLG F +++ + DTL
Sbjct: 65 EFLADKPRFAEVVHDIREFVQDAELIIHNAQFDLGFLDMEFQLLGLPPFRQHVGNVIDTL 124
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR++ GKRNSLDALC+R IS HR LHG LLDAELLAEVYLAMTRGQ +L
Sbjct: 125 REARQMFPGKRNSLDALCERLGISNAHRKLHGALLDAELLAEVYLAMTRGQDSLVIDTLD 184
Query: 183 NNS--NNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
S + + T + +P+ A E H +L +DK S G+ +W++
Sbjct: 185 GGSGQDGVVTTADLSRLTLPVLRATDEEQQAHLALLKGLDKASGGKTVWQE 235
>gi|339326489|ref|YP_004686182.1| DNA polymerase III subunit epsilon [Cupriavidus necator N-1]
gi|338166646|gb|AEI77701.1| DNA polymerase III subunit epsilon [Cupriavidus necator N-1]
Length = 246
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 115/233 (49%), Positives = 158/233 (67%), Gaps = 7/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ G R+IEIGCVE+ NR++TG +LH+Y+NP RD ++ A+A+HG+T
Sbjct: 5 RQIVLDTETTGLSAATGDRLIEIGCVELMNRRLTGRHLHFYVNPERDIDEGAIAVHGITV 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+E+V++ +V ++E+IIHNA FD+GFLDME LLG F ++ + DTL
Sbjct: 65 EFLADKPRFAEVVNDIREFVQDAELIIHNAPFDLGFLDMEFQLLGLPPFRQHAGNVIDTL 124
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR++ GKRNSLDALCDR IS HRTLHG LLDAELLAEVYLAMTRGQ +L +
Sbjct: 125 REARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQDSLVI--DM 182
Query: 183 NNSNNIETKIKIPNN-----IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++S + +P+ A E H +L +DK S G+ +W++
Sbjct: 183 HDSTAGAGGAVASADLSRLALPVLRATDEEQQAHLALLKGLDKASGGKTVWQE 235
>gi|347818927|ref|ZP_08872361.1| DNA polymerase III, epsilon subunit [Verminephrobacter
aporrectodeae subsp. tuberculatae At4]
Length = 238
Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 116/235 (49%), Positives = 163/235 (69%), Gaps = 9/235 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ +G RIIE+GCVE+ NR++TGNNLH + NP RDS + AL +HG+
Sbjct: 1 MSRQIVLDTETTGLSADNGDRIIELGCVELLNRRLTGNNLHLFFNPDRDSHEDALKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FLK+K +F+E+V+ + Y+ ++E+IIHNAAFD+GFLD EL+L G F +I +TD
Sbjct: 61 SNEFLKDKPRFAEVVERVIEYLRDAEVIIHNAAFDLGFLDKELALTGRPAFRTHIASVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR+++ GKRNSLDALC+R ++ R LHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLAMAREMYPGKRNSLDALCERLGVNNSGRILHGALLDAELLADVYIHLTRGQDALLIAD 180
Query: 181 KINNS------NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
S I+ + + +P+ A++ E V H +L++IDK S G+ IW+
Sbjct: 181 DAQESAHGLKVTAIDLRALV---LPVVHASAQEQVAHAEVLAQIDKASGGKTIWR 232
>gi|89900967|ref|YP_523438.1| DNA polymerase III subunit epsilon [Rhodoferax ferrireducens T118]
gi|89345704|gb|ABD69907.1| DNA polymerase III, epsilon subunit [Rhodoferax ferrireducens T118]
Length = 233
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 114/230 (49%), Positives = 161/230 (70%), Gaps = 2/230 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL+ G RIIEIGCVE+ R++TGNN H+Y+NPGR+S + AL +HG+T+
Sbjct: 2 RQIFLDTETTGLSADTGDRIIEIGCVELFKRKLTGNNKHFYLNPGRESHEDALRVHGITS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FLK+K KF + D L YV ++EIIIHNA FD+GFL+ EL+LLG F +++ +TDTL
Sbjct: 62 AFLKDKPKFEAVADELLAYVKDAEIIIHNAPFDLGFLNKELALLGRPRFKEFVGSVTDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+MA+++ GKRNSL+ALCDR + R LHG LLDAELLA+VY+ +TRGQ L +
Sbjct: 122 VMAKEMFPGKRNSLNALCDRLGVDNSGRALHGALLDAELLADVYINLTRGQDALLMEAGA 181
Query: 183 NNSNNIE-TKIKIPNNI-PIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
S +++ +I + + + P+ AN E H+ +L++IDK S + +W+K
Sbjct: 182 TESESLQVVQIDLGSIVLPVLAANDQESAAHDDVLNQIDKASGNKTVWRK 231
>gi|17546591|ref|NP_519993.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum GMI1000]
gi|17428890|emb|CAD15574.1| probable dna polymerase III (epsilon chain) protein [Ralstonia
solanacearum GMI1000]
Length = 242
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/230 (52%), Positives = 156/230 (67%), Gaps = 5/230 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG NLH+Y+NP R+ + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYLNPEREIDAGAMAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+F+ +K KF+E+VD +YV +E IIHNAAFD+GFLDME LG F +++ DTL
Sbjct: 62 EFVADKPKFAEVVDEIRDYVQGAEAIIHNAAFDLGFLDMEFKRLGLPPFREHLAGHIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
L AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ+ L +
Sbjct: 122 LDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVID-ML 180
Query: 183 NNSNNIETKIKIPN----NIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + + + +PI LA E H +L +IDK S G+ +W
Sbjct: 181 ESGETAAAEAAVIDLSGLELPILLATEAEAAAHATVLKEIDKASGGKTVW 230
>gi|332528386|ref|ZP_08404380.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
19624]
gi|332042149|gb|EGI78481.1| DNA polymerase III, epsilon subunit [Hylemonella gracilis ATCC
19624]
Length = 252
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 158/229 (68%), Gaps = 3/229 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ G RIIE+GCVE+ NR+++GNNLH+Y NPGRDS + AL +HG++
Sbjct: 2 RQIVLDTETTGLSAEGGDRIIELGCVELLNRKLSGNNLHFYFNPGRDSHEDALRVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K KF+E+ L Y+ +E+IIHNAAFDVGFL+ EL L+G ++ ITDTL
Sbjct: 62 EFLRDKPKFAEVAQEILAYLQGAELIIHNAAFDVGFLNKELELIGKPALHTFVGGITDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
MA++++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ MTRGQ L +
Sbjct: 122 AMAKELYPGKRNSLDALCDRLGVDNSGRTLHGALLDAELLADVYINMTRGQDALLIDAGD 181
Query: 181 KINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +I + ++P+ A+ EL H +L++IDK G+ +W
Sbjct: 182 AVEQAGAGFERIDLSRFDLPVLHASEQELAAHGDVLAQIDKACGGKTVW 230
>gi|299066469|emb|CBJ37657.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum CMR15]
Length = 242
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 120/232 (51%), Positives = 156/232 (67%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG NLH+Y NP R + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYFNPERQIDAGAMAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+F+ +K KF+E+VD +YV +E IIHNAAFD+GFLDME LG +F +++ DTL
Sbjct: 62 EFVADKPKFAEVVDEIRDYVQGAEAIIHNAAFDLGFLDMEFKRLGLPSFREHLDGHIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
L AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ+ L +
Sbjct: 122 LDARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVID-ML 180
Query: 183 NNSNNIETKIKIPN----NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + + +PI LA E H +L +IDK S G+ +W +
Sbjct: 181 ESGETAAAEAAVIDLSGLELPILLATEAEAAAHATVLKEIDKASGGKTVWSR 232
>gi|113868435|ref|YP_726924.1| DNA polymerase III subunit epsilon [Ralstonia eutropha H16]
gi|113527211|emb|CAJ93556.1| DNA polymerase III epsilon subunit [Ralstonia eutropha H16]
Length = 246
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 158/233 (67%), Gaps = 7/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ G R+IEIGCVE+ NR++TG +LH+Y+NP RD ++ A+A+HG+T
Sbjct: 5 RQIVLDTETTGLSAATGDRLIEIGCVELMNRRLTGRHLHFYVNPERDIDEGAIAVHGITV 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+E+V++ ++ ++E+IIHNA FD+GFLDME LLG F ++ + DTL
Sbjct: 65 EFLADKPRFAEVVNDIREFIQDAELIIHNAPFDLGFLDMEFQLLGLPPFRQHAGNVIDTL 124
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR++ GKRNSLDALCDR IS HRTLHG LLDAELLAEVYLAMTRGQ +L +
Sbjct: 125 REARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQDSLVI--DM 182
Query: 183 NNSNNIETKIKIPNN-----IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++S + +P+ A E H +L +DK S G+ +W++
Sbjct: 183 HDSTAGHGGAVAAADLSRLALPVLRATDEEQQAHLALLKGLDKASGGKTVWQE 235
>gi|239815139|ref|YP_002944049.1| DNA polymerase III subunit epsilon [Variovorax paradoxus S110]
gi|239801716|gb|ACS18783.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus S110]
Length = 235
Score = 240 bits (613), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 160/233 (68%), Gaps = 3/233 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ +G RIIE+GCVE+ R++TGN+LH Y NP R+S + AL +HGL
Sbjct: 1 MSRQIVLDTETTGLSAENGDRIIELGCVELFARKLTGNDLHIYFNPERESHEDALKVHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
TT FL++K KF+ + ++ + Y+ +E+IIHNAAFDVGFL+ EL L G ++ +TD
Sbjct: 61 TTDFLRDKPKFATLANDIVEYLRGAELIIHNAAFDVGFLNKELELAGLPPLRSFVGEVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA++++ GKRNSLDALCDR+ + + +RT HG LDA+LLA+VY+ +TRGQ L
Sbjct: 121 TLAMAKQVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLIDV 180
Query: 181 KINNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N T + I ++P+ +A EL H +LS++DK SNGR ++++
Sbjct: 181 ASNEPAQGTTVVAIDLSQFDLPVIMAAEQELAAHEAVLSQLDKSSNGRTLFRQ 233
>gi|121594487|ref|YP_986383.1| DNA polymerase III subunit epsilon [Acidovorax sp. JS42]
gi|120606567|gb|ABM42307.1| DNA polymerase III, epsilon subunit [Acidovorax sp. JS42]
Length = 237
Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 114/232 (49%), Positives = 159/232 (68%), Gaps = 3/232 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ G RIIE+GCVE+ NR++TGNNLH Y+NP RDS + AL +HG+
Sbjct: 1 MSRQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPERDSHEDALKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FL++K KF+E V + L Y+ +E+IIHNA+FDVGFLD EL L+G + + ++ + D
Sbjct: 61 SNEFLRDKPKFAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA+++ GKRNSLD+LCDR + RTLHG LLDAELLA+VY+ MTRGQ L
Sbjct: 121 TLAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLIMD 180
Query: 181 KINNSNNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ T + + + + A++ EL +H +L +IDK S+G+ IW+
Sbjct: 181 EATAGAGGTTVAAVDLSRIALTVLTASAQELAEHEEVLVQIDKSSSGKTIWR 232
>gi|222110838|ref|YP_002553102.1| DNA polymerase III subunit epsilon [Acidovorax ebreus TPSY]
gi|221730282|gb|ACM33102.1| DNA polymerase III, epsilon subunit [Acidovorax ebreus TPSY]
Length = 237
Score = 239 bits (609), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 114/232 (49%), Positives = 158/232 (68%), Gaps = 3/232 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ G RIIE+GCVE+ NR++TGNNLH Y+NP RDS + AL +HG+
Sbjct: 1 MSRQIVLDTETTGLSAEGGDRIIELGCVELVNRKLTGNNLHLYLNPERDSHEDALKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FL++K KF+E V + L Y+ +E+IIHNA+FDVGFLD EL L+G + + ++ + D
Sbjct: 61 SNEFLRDKPKFAERVQDILQYLQGAELIIHNASFDVGFLDKELELVGLAPLSAHVGGVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA+++ GKRNSLD+LCDR + RTLHG LLDAELLA+VY+ MTRGQ L
Sbjct: 121 TLAMAKEMFPGKRNSLDSLCDRLGVDNSSRTLHGALLDAELLADVYINMTRGQDALLIMD 180
Query: 181 KINNSNNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ T + + + + A++ EL +H +L +IDK S G+ IW+
Sbjct: 181 EATAGAGGTTVAAVDLSRIALTVLTASAQELAEHEEVLVQIDKSSGGKTIWR 232
>gi|260221145|emb|CBA29417.1| DNA polymerase III subunit epsilon [Curvibacter putative symbiont
of Hydra magnipapillata]
Length = 236
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 117/236 (49%), Positives = 157/236 (66%), Gaps = 13/236 (5%)
Query: 3 RHIVLDIETTGL---NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHG 59
R IVLD ETTG + + R++EIGCVE+ NR++TGNNLH+Y+NPGRDS++ AL +HG
Sbjct: 2 RQIVLDTETTGFYANHPDNPDRMVEIGCVELVNRKLTGNNLHFYLNPGRDSDEGALRVHG 61
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
LTT+FL +K +F EI ++YV +EIIIHNA FD+ FLDMEL G F + +
Sbjct: 62 LTTQFLSDKPRFEEIAQQLVDYVGGAEIIIHNAPFDLSFLDMELGRTGRKPFKTCVAGVL 121
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MA+++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ MTRGQ L
Sbjct: 122 DTLVMAKEMFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINMTRGQDAL--- 178
Query: 180 PKINNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ +S E I + +P+ AN+ E+ H +LS++DK S G+ +WK
Sbjct: 179 -IMESSAPQEAGIVVEQLDLRSIQLPVLEANAQEMAAHEDVLSQLDKSSGGKTVWK 233
>gi|114332140|ref|YP_748362.1| DNA polymerase III subunit epsilon [Nitrosomonas eutropha C91]
gi|114309154|gb|ABI60397.1| DNA polymerase III, epsilon subunit [Nitrosomonas eutropha C91]
Length = 234
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 109/229 (47%), Positives = 160/229 (69%), Gaps = 3/229 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R++ LD ETTGL+ GHRI+EI VE+ NR+ TG + H Y+NPGR+S++ AL +HGL+
Sbjct: 2 RYVFLDTETTGLDPALGHRIVEIAAVEVCNRRSTGRHFHRYLNPGRESDEGALRVHGLSR 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F EI FL ++ ++EI+IHNA FDVGF++ EL L+ Y +I DTL
Sbjct: 62 EFLQDKPAFQEICSEFLEFIEDAEILIHNAPFDVGFINRELGLIRLEPMHNYCLQIVDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
++A+++H GKRN+LDALC+RY I HRTLHG LLDAELLAEVYLAMTRGQ +L +P++
Sbjct: 122 MLAKELHPGKRNNLDALCERYQIDNAHRTLHGALLDAELLAEVYLAMTRGQESLLMEPEV 181
Query: 183 NNSNNI-ETKIKIPNNIP--IKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ +++++ N+ ++ + EL H+ +L +I+ S G C+W
Sbjct: 182 PEAGKSGDSRLRATENLTLIVQPVSQTELELHDRLLERINTESKGNCLW 230
>gi|309782421|ref|ZP_07677145.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
gi|404396345|ref|ZP_10988140.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_2_56FAA]
gi|308918758|gb|EFP64431.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_7_47FAA]
gi|348614834|gb|EGY64373.1| DNA polymerase III, epsilon subunit [Ralstonia sp. 5_2_56FAA]
Length = 242
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 119/231 (51%), Positives = 154/231 (66%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TG NLH+YINP R+ + A+A+HG+T
Sbjct: 2 RQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPEREIDAGAMAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+F+ +K KF+EIV+ +YV +E IIHNAAFD+GFLDME LG F +++ DTL
Sbjct: 62 EFVADKPKFAEIVNEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGHIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR++ GKRNSLDALCDR IS HRTLHG LLDAELLAEVYLAMTRGQ+ L
Sbjct: 122 REARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDMLE 181
Query: 183 NNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + +P+ LA E H +L +IDK S G+ +W +
Sbjct: 182 SGEGASAEAVAVDLSALQLPVLLATEAEAEAHAGVLKEIDKASGGKTVWTR 232
>gi|452127347|ref|ZP_21939930.1| DNA polymerase III subunit epsilon [Bordetella holmesii F627]
gi|452130718|ref|ZP_21943290.1| DNA polymerase III subunit epsilon [Bordetella holmesii H558]
gi|451920643|gb|EMD70789.1| DNA polymerase III subunit epsilon [Bordetella holmesii H558]
gi|451922442|gb|EMD72587.1| DNA polymerase III subunit epsilon [Bordetella holmesii F627]
Length = 244
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 146/230 (63%), Gaps = 3/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTGL+ GHRI+EIGCVEI NR +TG NLH Y+NP R S+ ALA+HGLTT
Sbjct: 2 RQIIFDTETTGLDPAQGHRIVEIGCVEIVNRGVTGRNLHIYLNPDRGSDPEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F E+ FL ++ +E+I HNA FDV F + EL G Y + D+L
Sbjct: 62 EFLSDKPRFGEVAAQFLAFIDGAELIAHNAGFDVKFFNAELQKAGLKTLDNYCGSVVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---K 179
AR ++ GKRNSLDALCDRY IS HRTLHG LLD++LLAEV+LAMTRGQ L
Sbjct: 122 AHARTLYPGKRNSLDALCDRYGISNAHRTLHGALLDSQLLAEVWLAMTRGQDALLIDVDD 181
Query: 180 PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + +E + +P+ A++ +L H L+ +DK C+W+
Sbjct: 182 AQGGGGSQVELSRFDASVLPVIAASAEDLAAHEAYLAALDKSVGAACLWR 231
>gi|241663345|ref|YP_002981705.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12D]
gi|240865372|gb|ACS63033.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12D]
Length = 242
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 119/231 (51%), Positives = 154/231 (66%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TG NLH+YINP R+ + A+A+HG+T
Sbjct: 2 RQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPEREIDAGAMAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+F+ +K KF+EIV+ +YV +E IIHNAAFD+GFLDME LG F +++ DTL
Sbjct: 62 EFVADKPKFAEIVNEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLGLPPFREHLSGHIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR++ GKRNSLDALCDR IS HRTLHG LLDAELLAEVYLAMTRGQ+ L
Sbjct: 122 REARQMFPGKRNSLDALCDRLGISNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDMLE 181
Query: 183 NNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + +P+ LA E H +L +IDK S G+ +W +
Sbjct: 182 SGEGASAEAVAVDLSALQLPVLLATEAEAEAHAGVLKEIDKASGGKTVWTR 232
>gi|187929152|ref|YP_001899639.1| DNA polymerase III subunit epsilon [Ralstonia pickettii 12J]
gi|187726042|gb|ACD27207.1| DNA polymerase III, epsilon subunit [Ralstonia pickettii 12J]
Length = 242
Score = 237 bits (604), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 118/231 (51%), Positives = 154/231 (66%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TG NLH+YINP R+ + A+A+HG+T
Sbjct: 2 RQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRNLHFYINPEREIDAGAMAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+F+ +K KF+EIV+ +YV +E IIHNAAFD+GFLDME LG F +++ DTL
Sbjct: 62 EFVADKPKFAEIVNEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLGLPAFREHLSGHIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ+ L
Sbjct: 122 REARQMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDMLE 181
Query: 183 NNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + +P+ LA E H +L +IDK S G+ +W +
Sbjct: 182 SGEGASAEAVAVDLSALQLPVLLATEAEAEAHAGVLKEIDKASGGKTVWTR 232
>gi|339483062|ref|YP_004694848.1| DNA polymerase III subunit epsilon [Nitrosomonas sp. Is79A3]
gi|338805207|gb|AEJ01449.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. Is79A3]
Length = 247
Score = 236 bits (602), Expect = 5e-60, Method: Compositional matrix adjust.
Identities = 119/230 (51%), Positives = 156/230 (67%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRI+EI VE+ NRQ T N+ HYY+NP R+S++ AL +HGLTT
Sbjct: 2 RQIVLDTETTGLEHKLGHRIVEIAAVELCNRQFTDNHFHYYLNPERESDEGALQVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FLK+K +F EI LN++ ++E+IIHNA FDVGFL+ EL L+ Y ITDTL
Sbjct: 62 EFLKDKPRFHEISKELLNFICDAELIIHNAPFDVGFLNHELGLINLKTLNNYCLSITDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A++ H GKRN+LDALC+RYNI RTLHG LLDAELLAEVYLAMTRGQ +L ++
Sbjct: 122 KLAKEFHPGKRNNLDALCERYNIDNSRRTLHGALLDAELLAEVYLAMTRGQESLLI--EL 179
Query: 183 NNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ + ++ K+ A ++E QH MIL I + SN C+W +
Sbjct: 180 EYVEPVQQALDKLDSFKTKIIEATADEYAQHLMILENISRESNNNCLWNR 229
>gi|94676582|ref|YP_588911.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str.
Hc (Homalodisca coagulata)]
gi|94219732|gb|ABF13891.1| DNA polymerase III, epsilon subunit [Baumannia cicadellinicola str.
Hc (Homalodisca coagulata)]
Length = 240
Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 122/242 (50%), Positives = 164/242 (67%), Gaps = 16/242 (6%)
Query: 1 MHRHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
M R IVLDIETTG+N + GHRIIEIG VEI NR+ITG N H Y+NP R ++ A
Sbjct: 1 MKRQIVLDIETTGINKLGVHYYGHRIIEIGAVEIINRRITGKNFHVYLNPERFIDQEAFK 60
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY 116
IHG++ FLK+K F+++ D + ++S SE++IH+A FD+GF+D E LL S +K
Sbjct: 61 IHGISNNFLKDKPTFAQVADKLITFISQSELVIHHAPFDIGFIDYEFKLLNRSMISKTFV 120
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTLL+ARKI GKRNSLDALC+RY+I IHRT HG LLDA++LAE+YL MT GQ+++
Sbjct: 121 QVTDTLLLARKIFPGKRNSLDALCNRYHIKNIHRTKHGALLDAKILAEIYLIMTGGQTSI 180
Query: 177 NFKPKINNSNNIETKIKIPN---------NIPIKLANSNELVQHNMILSKIDKHSNGRCI 227
NF + +NIE K K N + + AN+ EL +H IL +I+K N +C+
Sbjct: 181 NF--NLTQESNIEQKYKGKNIYFPLSHEDKLKVIYANNKELSEHRNILDRIEK-QNSKCL 237
Query: 228 WK 229
WK
Sbjct: 238 WK 239
>gi|386333185|ref|YP_006029354.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum Po82]
gi|334195633|gb|AEG68818.1| DNA polymerase III subunit epsilon [Ralstonia solanacearum Po82]
Length = 242
Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 120/231 (51%), Positives = 156/231 (67%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG NLH+YINP R+ + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPEREIDPGAMAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+F+ +K KF+E+V +YV +E IIHNAAFD+GFLDME LG +F +++ DTL
Sbjct: 62 EFVADKPKFAEVVAEIRDYVQGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGHIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ+ L +
Sbjct: 122 LEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDMLE 181
Query: 181 KINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + +PI LA E H +L +IDK S G+ +W +
Sbjct: 182 GGETAATEAAAVDLSGLALPILLATEAEAAAHATVLKEIDKASGGKTVWSR 232
>gi|325983345|ref|YP_004295747.1| DNA polymerase III subunit epsilon [Nitrosomonas sp. AL212]
gi|325532864|gb|ADZ27585.1| DNA polymerase III, epsilon subunit [Nitrosomonas sp. AL212]
Length = 245
Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 119/227 (52%), Positives = 158/227 (69%), Gaps = 2/227 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRI+EI VE+ NRQ TG++ HYY+NP R+S++ AL +HGLT
Sbjct: 2 RQIVLDTETTGLECKLGHRIVEIAAVELCNRQFTGSHFHYYLNPERESDEGALQVHGLTM 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K KF EI FLN++S++E+IIHNA FDVGFL+ EL L Y +ITDTL
Sbjct: 62 EFLQDKAKFYEISREFLNFISDAELIIHNAPFDVGFLNHELGLCNLKALDNYCSQITDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+++H GKRN+LDALC+RYNI R LHG LLDAELLAEVYLAMTRGQ +L +
Sbjct: 122 KLAKELHPGKRNNLDALCERYNIDNSKRKLHGALLDAELLAEVYLAMTRGQESLLIELDY 181
Query: 183 NNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
S ++I + N ++ I A + E +H IL +I + S+ +C+W
Sbjct: 182 VESVQ-PSQIDLDNSDLRIIAATAEEKARHCGILEEIARASDNKCLW 227
>gi|91788057|ref|YP_549009.1| DNA polymerase III subunit epsilon [Polaromonas sp. JS666]
gi|91697282|gb|ABE44111.1| DNA polymerase III, epsilon subunit [Polaromonas sp. JS666]
Length = 234
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 160/230 (69%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ +G RIIEIGCVE+ R++TGNN H+Y+NP RDS + AL +HG++
Sbjct: 2 RQIVLDTETTGLSAENGDRIIEIGCVELVGRKLTGNNRHFYLNPERDSHEDALKVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FLK+K KF+ + D L Y+ +EIIIHNA FDV FL+ EL L+G + ++TD+L
Sbjct: 62 EFLKDKPKFAAVADELLEYLQGAEIIIHNAPFDVSFLNKELELIGRDPIRHCVAKVTDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+MA+++ GKRNSLDALCDR ++ RTLHG LLDAELLA+VY+ +TRGQ++L
Sbjct: 122 MMAKELFPGKRNSLDALCDRLDVDNSGRTLHGALLDAELLADVYINLTRGQNSLMMDVG- 180
Query: 183 NNSNNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + +T I + +P+ LAN E+ H ++L+ IDK S G+ +W+
Sbjct: 181 GPAQDGDTPPLIDLSAFALPLLLANDQEIAAHEVLLADIDKASKGKTVWR 230
>gi|300691174|ref|YP_003752169.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
gi|299078234|emb|CBJ50881.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum PSI07]
Length = 242
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 121/231 (52%), Positives = 156/231 (67%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG NLH+YINP R+ + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPEREIDAGAMAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+F+ +K KF+EIV +YV +E IIHNAAFD+GFLDME L +F +++ DTL
Sbjct: 62 EFVADKPKFAEIVAEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLKLPSFREHLAGHIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ+ L +
Sbjct: 122 LEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDMLE 181
Query: 181 KINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ I + +PI LA+ E H +L +IDK S G+ +W +
Sbjct: 182 GGETAATEAAAIDLSGLELPILLASEAEAAAHATVLKEIDKASGGKTVWPR 232
>gi|348618347|ref|ZP_08884875.1| DNA polymerase III, subunit epsilon [Candidatus Glomeribacter
gigasporarum BEG34]
gi|347816394|emb|CCD29587.1| DNA polymerase III, subunit epsilon [Candidatus Glomeribacter
gigasporarum BEG34]
Length = 235
Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 153/233 (65%), Gaps = 8/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R + LD ETTGLN G RI+EIGCVE+ NRQ++G H+Y+NP R+S K ALA+HGLTT
Sbjct: 2 RQLTLDTETTGLNAQSGDRIVEIGCVELINRQLSGQTRHFYLNPERESAKEALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI-YRITDT 121
+FL++K KF++I ++ ++IIIHNA FD+ FLD EL+LLG F ++ I DT
Sbjct: 62 EFLRDKPKFAQIAFELCAFMQGAQIIIHNAPFDLAFLDAELALLGLPPFQEHCGVEIIDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L +AR + GKRNSLDALC+R+ + HRTLHG LLD LLA VYLAMTRGQ +L +
Sbjct: 122 LALARTLFPGKRNSLDALCERFGVDNTHRTLHGALLDTRLLAHVYLAMTRGQESLGI--E 179
Query: 182 INNSNNIETKIKIP-----NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ + + +P +P++ A+ +E+ H +L ++++ C W+
Sbjct: 180 LSEPSAPGKSLPVPAALDAGALPVRKASPDEVAAHRAMLDELERTLKAPCAWR 232
>gi|332525346|ref|ZP_08401511.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
gi|332108620|gb|EGJ09844.1| DNA polymerase III subunit epsilon [Rubrivivax benzoatilyticus JA2]
Length = 234
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 153/230 (66%), Gaps = 2/230 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL+ +DG R++E+GC+E+ NR+++G LH+Y+NP R S A+ +HGLT
Sbjct: 2 RQIFLDTETTGLSAVDGDRLVEVGCIEMLNRRLSGRTLHHYLNPERSSNPEAVKVHGLTD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ + D F+ +V ++E+IIHNAAFDVGFLD EL+ LG + ITD+L
Sbjct: 62 EFLADKPLFAAVADEFIEFVRDAELIIHNAAFDVGFLDAELTRLGKPRLVELGCTITDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+MAR++ GK NSLDALC R + +R LHG LLDA LLAEVY+ MTRGQ +L
Sbjct: 122 VMARQLFPGKANSLDALCKRLEVDNSNRALHGALLDAGLLAEVYIRMTRGQDSLVIDDAQ 181
Query: 183 NNSNNIE-TKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+E I + +P+ +A+ E H +L+++DK SNGR IW++
Sbjct: 182 EGGTALEVAAIDLSQFTLPVLVASDEEAAAHEAVLAELDKASNGRTIWRQ 231
>gi|393776721|ref|ZP_10365015.1| DNA polymerase III subunit epsilon [Ralstonia sp. PBA]
gi|392716078|gb|EIZ03658.1| DNA polymerase III subunit epsilon [Ralstonia sp. PBA]
Length = 248
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 111/229 (48%), Positives = 155/229 (67%), Gaps = 3/229 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGLN G R+IEIGCVE+ NR++TG LH+YINP R+ + A+A+HG+T
Sbjct: 2 RQIILDTETTGLNAATGDRVIEIGCVEMVNRRLTGRTLHFYINPQREIDAGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K FS + ++ ++V ++E IIHNA FD+GFLDME LLG F +++ + DTL
Sbjct: 62 EFLVDKPVFSAVANDIRDFVQDAEAIIHNAPFDLGFLDMEFKLLGLPPFREHLGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
AR++ GKRNSLDALCDR +S HRTLHG LLDAE+LAEVYLAMTRGQ++L +
Sbjct: 122 YEARQMFPGKRNSLDALCDRLGVSNSHRTLHGALLDAEILAEVYLAMTRGQNSLVIDMLD 181
Query: 181 KINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +I ++ ++ A E H +L+ +DK S G+ +W
Sbjct: 182 SSATAGDAVDRIDFATLDLIVRRATDAEAEAHAQVLAGLDKASGGKTVW 230
>gi|344170864|emb|CCA83300.1| DNA polymerase III epsilon subunit [blood disease bacterium R229]
gi|344174416|emb|CCA86207.1| DNA polymerase III epsilon subunit [Ralstonia syzygii R24]
Length = 242
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/231 (52%), Positives = 155/231 (67%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG NLH+YINP R+ + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPEREIDAGAMAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+F+ +K KF+EIV +YV +E IIHNAAFD+GFLDME L F +++ DTL
Sbjct: 62 EFVADKPKFAEIVAEIRDYVQGAEAIIHNAAFDLGFLDMEFQRLKLPPFREHLAGHIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ+ L +
Sbjct: 122 LEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDMLE 181
Query: 181 KINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ I + +PI LA+ E H +L +IDK S G+ +W +
Sbjct: 182 GGETAATEAAAIDLSGLELPILLASEAEAAAHATVLKEIDKASGGKTVWPR 232
>gi|257095469|ref|YP_003169110.1| DNA polymerase III subunit epsilon [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
gi|257047993|gb|ACV37181.1| DNA polymerase III, epsilon subunit [Candidatus Accumulibacter
phosphatis clade IIA str. UW-1]
Length = 238
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 158/231 (68%), Gaps = 5/231 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL GHRIIEI CVE++NR++T + H Y+NP RD + AL++HG++
Sbjct: 2 RQIFLDTETTGLEHKFGHRIIEIACVEMRNRRLTNRHFHRYLNPDRDIDAGALSVHGISR 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+++ FL++V +E++IHNAAFDVGFL+ EL+LL + + + DTL
Sbjct: 62 EFLLDKPRFADVAVEFLDFVRGAELVIHNAAFDVGFLNAELALLDMAPVDTVCHGVCDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA+ +H GK+N+L+ALC+RY + HRTLHG LLDAE+LAEVYLAMTRGQ +L
Sbjct: 122 RMAKDLHPGKKNNLNALCERYGVDNSHRTLHGALLDAEILAEVYLAMTRGQESLIMDLGD 181
Query: 183 NNSNNIETKIKIPN-----NIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+N ++T + P+ + +K A+ EL +H +L+ I + S G+C+W
Sbjct: 182 DNGGRLDTAGRTPSPGRRQTLQVKRASPEELAEHQQVLTAIQEASKGKCLW 232
>gi|383757722|ref|YP_005436707.1| DNA polymerase III epsilon subunit DnaQ [Rubrivivax gelatinosus
IL144]
gi|381378391|dbj|BAL95208.1| DNA polymerase III epsilon subunit DnaQ [Rubrivivax gelatinosus
IL144]
Length = 234
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 153/230 (66%), Gaps = 2/230 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL+ +DG R++E+GC+E+ NR+++G LH+Y+NP R S A+ +HGLT
Sbjct: 2 RQIFLDTETTGLSAVDGDRLVEVGCIEMLNRRLSGRTLHHYLNPERSSNPEAVKVHGLTD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ + D F+ +V ++E+IIHNAAFDVGFLD EL+ LG + ITD+L
Sbjct: 62 EFLADKPLFAAVADEFIEFVRDAELIIHNAAFDVGFLDAELTRLGKPRLAELGCTITDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
LMAR++ GK NSLDALC R + +R LHG LLDA LLAEVY+ MTRGQ +L
Sbjct: 122 LMARELFPGKANSLDALCKRLEVDNSNRALHGALLDAGLLAEVYIRMTRGQDSLVIDVVE 181
Query: 183 NNSNNIE-TKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ +E I + +P+ A+ E H +L+++DK SNGR IW++
Sbjct: 182 EGGSALEVAAIDLSQFTLPVLAASEQEAAAHEAVLAELDKSSNGRTIWRQ 231
>gi|398804054|ref|ZP_10563057.1| DNA polymerase III, epsilon subunit [Polaromonas sp. CF318]
gi|398095062|gb|EJL85412.1| DNA polymerase III, epsilon subunit [Polaromonas sp. CF318]
Length = 235
Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 112/233 (48%), Positives = 157/233 (67%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ +G RIIEIGCVE+ R++TGNN H+Y+NP RDS + AL +HG++
Sbjct: 2 RQIVLDTETTGLSAENGDRIIEIGCVELVARKLTGNNRHFYLNPERDSHEDALKVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FLK+K KF+ + D + Y+ ++EIIIHNA FDV FL+ EL L+G + ++TD+L
Sbjct: 62 EFLKDKPKFAAVADELMEYLQDAEIIIHNAPFDVSFLNKELELIGRPPIKHCVAKVTDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL------ 176
+MA+++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ +TRGQ+ L
Sbjct: 122 MMAKELFPGKRNSLDALCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQNALVMDVGD 181
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ NN I+ + +P+ AN E +H +L+ IDK S G+ +W+
Sbjct: 182 TTQEGDNNVPQIDLSV---FELPLLAANEQEAAEHEKLLAGIDKASKGKTVWR 231
>gi|421887797|ref|ZP_16318936.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum K60-1]
gi|378966859|emb|CCF95684.1| DNA polymerase III epsilon subunit [Ralstonia solanacearum K60-1]
Length = 242
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 119/231 (51%), Positives = 155/231 (67%), Gaps = 3/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN G R+IEIGCVE+ NR++TG NLH+YINP R+ + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLNAATGDRVIEIGCVELVNRRLTGRNLHFYINPEREIDAGAMAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+F+ +K KF+E+V +YV +E IIHNAAFD+GFLDME LG +F +++ DTL
Sbjct: 62 EFVADKPKFAEVVAEIRDYVQGAEAIIHNAAFDLGFLDMEFRRLGLPSFREHLDGHIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L AR++ GKRNSLDALCDR +S HRTLHG LLDAELLAEVYLAMTRGQ+ L +
Sbjct: 122 LEARRMFPGKRNSLDALCDRLGVSNAHRTLHGALLDAELLAEVYLAMTRGQNTLVIDMLE 181
Query: 181 KINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + +PI LA E H +L +IDK S + +W +
Sbjct: 182 VGETAATEAAAVDLSGLALPILLATEAEAAAHATVLKEIDKASGSKTVWSR 232
>gi|388565465|ref|ZP_10151956.1| DNA polymerase III subunit epsilon [Hydrogenophaga sp. PBC]
gi|388267354|gb|EIK92853.1| DNA polymerase III subunit epsilon [Hydrogenophaga sp. PBC]
Length = 239
Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 109/230 (47%), Positives = 154/230 (66%), Gaps = 2/230 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ +G RIIEIGCVE+ NR+ TGNNLH+Y+NP RDS + AL +HG++
Sbjct: 2 RQIILDTETTGLSAENGDRIIEIGCVELLNRKFTGNNLHHYVNPERDSHEDALKVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K KF+ I ++ + Y+ +E+IIHNA FDV FL+ME LG + + DTL
Sbjct: 62 EFLRDKPKFAAIAEDLVEYLRGAEVIIHNAPFDVAFLNMEFRRLGLPLVKDIVASVLDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
+MA++++ GKRN LDALCDR + RTLHG LLDAELLA+VY+ MTRGQ L +
Sbjct: 122 VMAKEMYPGKRNGLDALCDRLGVDNSGRTLHGALLDAELLADVYINMTRGQDALLIDVSD 181
Query: 181 KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+E ++P+ LAN E H +L+++DK S G+ +W++
Sbjct: 182 APGEGGVVEVVDLSRLDLPVLLANEQEAQAHQTVLAELDKSSKGKTVWRR 231
>gi|237746089|ref|ZP_04576569.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS]
gi|229377440|gb|EEO27531.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes HOxBLS]
Length = 248
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 117/231 (50%), Positives = 152/231 (65%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL DG RIIEIGCVE+ NR++T ++ H YINP RDS ALA+HGLTT
Sbjct: 2 RQIVLDTETTGLYANDGDRIIEIGCVEVLNRRVTDHHFHQYINPERDSHPDALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI F +++ +E++IHNA FDVGFL+ EL+ L + ITD+L
Sbjct: 62 EFLSDKPKFAEIAQAFCDFIKGAELVIHNAPFDVGFLNAELARLNLPPVEELASCITDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
L AR + G+RNSLDALC+R+ I HRTLHG LLDAELLAEVYLAMTRGQ L +
Sbjct: 122 LKARDMFPGRRNSLDALCERFEIDNTHRTLHGALLDAELLAEVYLAMTRGQETLEIEKLT 181
Query: 183 NNSNNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGR-CIWK 229
++ E + P + I + EL +H +L I+K + G C+W+
Sbjct: 182 LSAAEEEARKNHPLSSLRILVLAPTEEELQKHEEVLDDIEKGNKGAPCVWR 232
>gi|171463544|ref|YP_001797657.1| DNA polymerase III subunit epsilon [Polynucleobacter necessarius
subsp. necessarius STIR1]
gi|171193082|gb|ACB44043.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
subsp. necessarius STIR1]
Length = 236
Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 156/229 (68%), Gaps = 4/229 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RIIEIGC+E+ R++T HYYINP RD + A A+HGL+
Sbjct: 2 RQVILDTETTGLNPATGDRIIEIGCIEMVGRRLTDRTFHYYINPERDIDAGAFAVHGLSR 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ IV+ + +V +EI+IHNAAFD+GFLD E +LL F +ITDTL
Sbjct: 62 EFLSDKPIFANIVEQLIEFVDGAEILIHNAAFDLGFLDNEFALLKRPPFRNLASKITDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP-- 180
L AR++ GKRNSLDALC+R++IS HRTLHG LLDA+LLAEVY+AMTRGQ +L+
Sbjct: 122 LDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYVAMTRGQEDLSIDLID 181
Query: 181 -KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ +++ TK +P N+ + A++ +L H IL++I K S +W
Sbjct: 182 YTVGADSSVHTK-ALPTNLKLLSASNEDLESHEKILAEIAKASKKDSVW 229
>gi|393760784|ref|ZP_10349589.1| DNA polymerase III subunit epsilon [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
gi|393161012|gb|EJC61081.1| DNA polymerase III subunit epsilon [Alcaligenes faecalis subsp.
faecalis NCIB 8687]
Length = 241
Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 160/233 (68%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL +GHRI+E+G VE+ NR++TG +LH Y+NP RDS+ ALAIHGLTT
Sbjct: 2 RQIILDTETTGLEPREGHRIVEVGGVELFNRKLTGRHLHLYLNPDRDSDPEALAIHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +F ++VD L++V ++E+IIHNA+FD FLD EL +G F++Y ITD+L
Sbjct: 62 EFLAGHPRFKDVVDQVLDFVQDAEVIIHNASFDTRFLDAELERVGKGPFSEYCASITDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L+AR++H GKRNSLDALC+RY IS HRTLHG LLD+ELLA+V+LAMTRGQ L +F
Sbjct: 122 LVAREMHPGKRNSLDALCERYGISNSHRTLHGALLDSELLADVWLAMTRGQDALLMDFDE 181
Query: 181 ---KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ +++ P+ + + A+ + +H + ++K + +W++
Sbjct: 182 SDGQGGQGSDLSLGKFDPSVLKVLRASPADQAEHEKYMDLLEKQNKKPPMWRE 234
>gi|237748501|ref|ZP_04578981.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13]
gi|229379863|gb|EEO29954.1| DNA polymerase III subunit epsilon [Oxalobacter formigenes OXCC13]
Length = 247
Score = 232 bits (592), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 118/230 (51%), Positives = 151/230 (65%), Gaps = 3/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL +G RIIEIGCVE+ +R +T N+ H YINP RDS ALA+HGLTT
Sbjct: 2 RQIVLDTETTGLYANNGDRIIEIGCVEVLSRHVTENHFHQYINPERDSHPDALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI F +Y+ +E+IIHNA FD+GFL+ EL+ LG + ITD+L
Sbjct: 62 EFLSDKPKFAEIAQAFCDYIRGAELIIHNAPFDIGFLNAELARLGMPKVEEIAECITDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP-K 181
+ AR + G+RNSLDALC+R+ IS HRTLHG LLD+ELLAEVYLAMTRGQ L
Sbjct: 122 VKARDMFPGRRNSLDALCERFEISNAHRTLHGALLDSELLAEVYLAMTRGQETLEIGGMS 181
Query: 182 INNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGR-CIWK 229
I + N +I + A EL +H +L I+K + G C+W+
Sbjct: 182 IEEEEAAAKAAPLSNIHIVVLAATEEELARHEEVLDDIEKSNKGAPCVWR 231
>gi|221066578|ref|ZP_03542683.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
gi|220711601|gb|EED66969.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni KF-1]
Length = 243
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 155/234 (66%), Gaps = 5/234 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ IDG R+IE+GCVE+ NR++TGNNLH Y N GRDS AL +HG+
Sbjct: 1 MSRQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFNAGRDSHPDALRVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
TT+FLK+K +F E +D Y+ +E+IIHNA FD+GFL+ EL L + + + D
Sbjct: 61 TTEFLKDKPRFEEKIDEIWEYLQGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MA++++ GKRNSLD+LCDR + +RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRGQDALLMSE 180
Query: 181 KINNSNNIETKIKIPNN-----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ++ T I + +P+ AN E H+ +L ++DK S G+ W+
Sbjct: 181 EPADAPAAGTMIVASVDLSSFRLPVLRANEQEQAAHDDVLKQMDKSSGGKTAWR 234
>gi|398807392|ref|ZP_10566270.1| DNA polymerase III, epsilon subunit [Variovorax sp. CF313]
gi|398089402|gb|EJL79918.1| DNA polymerase III, epsilon subunit [Variovorax sp. CF313]
Length = 235
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 157/233 (67%), Gaps = 3/233 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ +G RIIE+GCVE+ R++TGN+LH Y NP R+S + AL +HGL
Sbjct: 1 MSRQIVLDTETTGLSAENGDRIIELGCVELFARKLTGNDLHIYFNPERESHEDALKVHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
TT FL++K KF+ + ++ + Y+ ++E+IIHNAAFDVGFL+ E G ++ +TD
Sbjct: 61 TTDFLRDKPKFATLANDIVEYLRDAELIIHNAAFDVGFLNKEFERAGLPALRTFVSEVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA++++ GKRNSLDALCDR+ + + +RT HG LDA+LLA+VY+ +TRGQ L
Sbjct: 121 TLAMAKQVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLIDV 180
Query: 181 KINNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N T + I +P+ +A +EL H +L ++DK S GR ++++
Sbjct: 181 ASNEPAQGTTVVAIDLSQFELPVIMAAEHELTAHEAVLVQLDKSSGGRTLFRE 233
>gi|319794398|ref|YP_004156038.1| DNA polymerase iii subunit epsilon [Variovorax paradoxus EPS]
gi|315596861|gb|ADU37927.1| DNA polymerase III, epsilon subunit [Variovorax paradoxus EPS]
Length = 240
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 154/233 (66%), Gaps = 3/233 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ +G R+IE+GCVE+ R++TGN+LH Y NP R+S + AL +HGL
Sbjct: 1 MSRQIVLDTETTGLSAENGDRVIELGCVELFARKLTGNDLHIYFNPERESHEDALKVHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
TT FL++K KF+ + ++ + Y+ +E+IIHNAAFDVGFL+ E G ++ +TD
Sbjct: 61 TTDFLRDKPKFATLANDIIEYLRGAELIIHNAAFDVGFLNKEFERAGLPPLRTFVAEVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA+ ++ GKRNSLDALCDR+ + + +RT HG LDA+LLA+VY+ +TRGQ L
Sbjct: 121 TLAMAKLVYPGKRNSLDALCDRFGVDRSNRTFHGAKLDAQLLADVYINLTRGQDALLIDV 180
Query: 181 KINNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N T + I +P+ A EL H +LS++DK S GR ++++
Sbjct: 181 ASNEPAQGTTVVAIDLSQFELPVIAAGEQELAAHEAVLSQLDKSSGGRTLFRQ 233
>gi|264678862|ref|YP_003278769.1| DNA polymerase III subunit epsilon [Comamonas testosteroni CNB-2]
gi|299532427|ref|ZP_07045819.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
gi|262209375|gb|ACY33473.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni CNB-2]
gi|298719665|gb|EFI60630.1| DNA polymerase III, epsilon subunit [Comamonas testosteroni S44]
Length = 243
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 112/235 (47%), Positives = 156/235 (66%), Gaps = 7/235 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ IDG R+IE+GCVE+ NR++TGNNLH Y N GRDS AL +HG+
Sbjct: 1 MSRQIVLDTETTGLSAIDGDRLIELGCVELVNRKLTGNNLHLYFNAGRDSHPDALRVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
TT+FLK+K +F E +D Y+ +E+IIHNA FD+GFL+ EL L + + + D
Sbjct: 61 TTEFLKDKPRFEEKIDEIWEYLQGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MA++++ GKRNSLD+LCDR + +RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRGQDALLMTE 180
Query: 181 KINNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ++ I +P+ +P+ AN E H+ +L ++DK S G+ W+
Sbjct: 181 EPADA-PAAGAIVVPSVDLSSFKLPVLRANEQEQQSHDDVLKQMDKSSGGKTAWR 234
>gi|456063104|ref|YP_007502074.1| DNA polymerase III, epsilon subunit [beta proteobacterium CB]
gi|455440401|gb|AGG33339.1| DNA polymerase III, epsilon subunit [beta proteobacterium CB]
Length = 236
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 113/231 (48%), Positives = 153/231 (66%), Gaps = 8/231 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G RIIEIGCVE+ R++T HYYINP RD + A A+HGL+
Sbjct: 2 RQVILDTETTGLNPATGDRIIEIGCVEMVGRRLTDRTFHYYINPERDIDAGAFAVHGLSR 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ IV+ + +V +E++IHNAAFD+GFLD E +LL F +ITDTL
Sbjct: 62 EFLSDKPVFANIVEELIEFVDGAEVVIHNAAFDLGFLDNEFALLKRPAFRGLASKITDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-----N 177
L AR++ GKRNSLDALC+R+ IS HRTLHG LLDA+LLAEVY+AMTRGQ +L +
Sbjct: 122 LDARQMFPGKRNSLDALCERFAISNQHRTLHGALLDAQLLAEVYVAMTRGQEDLSIDLID 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + S ++ +P+N+ + A+ + H ILS+I K S +W
Sbjct: 182 YTVGTDASGQMKA---LPSNLKLMTASEEDCQLHEKILSEIAKASKKDPVW 229
>gi|418530216|ref|ZP_13096142.1| DNA polymerase III subunit epsilon [Comamonas testosteroni ATCC
11996]
gi|371452769|gb|EHN65795.1| DNA polymerase III subunit epsilon [Comamonas testosteroni ATCC
11996]
Length = 243
Score = 229 bits (585), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 155/234 (66%), Gaps = 5/234 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ IDG R+IE+GCVE+ NR++TGNNLH Y N GRDS AL +HG+
Sbjct: 1 MSRQIVLDTETTGLSPIDGDRLIELGCVELVNRKLTGNNLHLYFNAGRDSHPDALRVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
TT+FLK+K +F + +D Y+ +E+IIHNA FD+GFL+ EL L + + + D
Sbjct: 61 TTEFLKDKPRFEQKIDEIWEYLQGAELIIHNAPFDLGFLNNELKLAKRPPLKQCVGGVLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MA++++ GKRNSLD+LCDR + +RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLVMAKEMYPGKRNSLDSLCDRLGVDNSNRTLHGALLDAELLADVYINLTRGQDALLMTE 180
Query: 181 KINNSNNIETKIKIPNN-----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ++ T I + +P+ AN E H+ +L ++DK S G+ W+
Sbjct: 181 EPADAPAAGTMIVASVDLSSFKLPVLRANEQEQSAHDDVLKQMDKSSGGKTAWR 234
>gi|121605184|ref|YP_982513.1| DNA polymerase III subunit epsilon [Polaromonas naphthalenivorans
CJ2]
gi|120594153|gb|ABM37592.1| DNA polymerase III, epsilon subunit [Polaromonas naphthalenivorans
CJ2]
Length = 240
Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 110/233 (47%), Positives = 160/233 (68%), Gaps = 10/233 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ +G RIIEIGCVE+ R++TGNN H+Y+NPGR+S + AL +HG++
Sbjct: 2 RQIVLDTETTGLSAENGDRIIEIGCVELVRRKLTGNNKHFYLNPGRNSHEDALKVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FLK+K KFS +VD L+Y+ +EIIIHNA FDV FL+ EL ++G + ++TD+L
Sbjct: 62 EFLKDKPKFSAVVDELLDYLQGAEIIIHNAPFDVSFLNKELEIIGREPLMHCVAKVTDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+MA+++ GKRNSL+ALCDR + RTLHG LLDAELLA+VY+ +TRGQ++L +
Sbjct: 122 MMAKEMFPGKRNSLNALCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQNSL----MM 177
Query: 183 NNSNNIETKIKIP------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + ++T P +P+ A+ E+ H +L +DK S G+ +W+
Sbjct: 178 DIGSPVQTGESEPLVDLRLFELPVLSASEQEMDAHEKVLLTLDKASRGKTVWR 230
>gi|424778402|ref|ZP_18205352.1| DNA polymerase III subunit epsilon [Alcaligenes sp. HPC1271]
gi|422886941|gb|EKU29353.1| DNA polymerase III subunit epsilon [Alcaligenes sp. HPC1271]
Length = 241
Score = 229 bits (584), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 159/233 (68%), Gaps = 5/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL +GHRI+E+G VE+ NR++TG +LH Y+NP RDS+ ALAIHGLTT
Sbjct: 2 RQIILDTETTGLEPREGHRIVEVGGVELFNRKLTGRHLHLYLNPDRDSDPEALAIHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +F ++VD L++V +E+IIHNA+FD FLD EL +G F++Y ITD+L
Sbjct: 62 EFLSGHPRFKDVVDQVLDFVQGAEVIIHNASFDTRFLDAELQKVGKGPFSQYCDSITDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
L+AR++H GKRNSLDALC+RY IS HRTLHG LLD+ELLA+V+LAMTRGQ L +F
Sbjct: 122 LVAREMHPGKRNSLDALCERYGISNSHRTLHGALLDSELLADVWLAMTRGQDALLMDFDE 181
Query: 181 ---KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + +N+ + + + A+ + +H + ++K + +W++
Sbjct: 182 SDGQGGDGSNLSLGKFDASVLKVLRASEADQAEHEKYMDVLEKQNKKPPMWRE 234
>gi|386827691|ref|ZP_10114798.1| DNA polymerase III, epsilon subunit [Beggiatoa alba B18LD]
gi|386428575|gb|EIJ42403.1| DNA polymerase III, epsilon subunit [Beggiatoa alba B18LD]
Length = 247
Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 120/242 (49%), Positives = 158/242 (65%), Gaps = 20/242 (8%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL +GHRIIEIGC+EI NR++T + H Y+NP + A+A+HGLT+
Sbjct: 2 RQIVLDTETTGLEPKEGHRIIEIGCIEILNRRVTKQHFHCYLNPECEISAEAVAVHGLTS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL++K KF+EIV F++++ ++E+IIHNA FDVGF++ EL LL + Y +ITD
Sbjct: 62 EFLQDKPKFAEIVTKFMDFIRDAELIIHNADFDVGFINHELQLLRQNWQALNHYC-QITD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR + G++ +LDALC RY I HR LHG LLDAELLAEVYLAMT GQ++L
Sbjct: 121 TLKMARTLFPGQKANLDALCRRYGIDNSHRELHGALLDAELLAEVYLAMTGGQTSL---- 176
Query: 181 KINNSNNIETKIKIPNN------------IPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ +N +T P +PI LAN+ EL H L+ IDK S G+C W
Sbjct: 177 -LATDSNQQTNRHQPAQETIRRLATDRPALPIILANAEELEAHQQRLNAIDKASGGKCAW 235
Query: 229 KK 230
KK
Sbjct: 236 KK 237
>gi|30248167|ref|NP_840237.1| DNA polymerase III subunit epsilon [Nitrosomonas europaea ATCC
19718]
gi|30180052|emb|CAD84052.1| probable DNA polymerase III (epsilon chain) protein [Nitrosomonas
europaea ATCC 19718]
Length = 232
Score = 228 bits (581), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 159/230 (69%), Gaps = 5/230 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R++ LD ETTGL+ GHRI+EI VE+ NR++T + H Y+NPGR+S++ AL +HGLT
Sbjct: 2 RYVFLDTETTGLDPALGHRIVEIAAVEVCNRRLTDRHFHRYLNPGRESDEGALRVHGLTR 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F ++ FL +++++EI IHNA FDVGF++ EL L+ + + + +I DTL
Sbjct: 62 EFLRDKPVFQDVCSEFLEFIADAEIFIHNAPFDVGFINRELDLIRFESMQNHCLQIIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK--- 179
++A+++H GKRN+LDALC+RY I HRTLHG LLDAELLAEVYLAMTRGQ +L +
Sbjct: 122 VLAKELHPGKRNNLDALCERYQIDNSHRTLHGALLDAELLAEVYLAMTRGQESLLMEMDA 181
Query: 180 PKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
P ++N K+ N + ++ A EL H+ ++ +I+ S G C+W
Sbjct: 182 PASRQADNPAVG-KVENLALIVQPATQAELELHSRLVERINAESKGNCLW 230
>gi|217970689|ref|YP_002355923.1| DNA polymerase III subunit epsilon [Thauera sp. MZ1T]
gi|217508016|gb|ACK55027.1| DNA polymerase III, epsilon subunit [Thauera sp. MZ1T]
Length = 239
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 154/232 (66%), Gaps = 9/232 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ +G R+IEIGCVE+ +R +TG + H YINPGR + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLDWRNGDRVIEIGCVELLDRSLTGRHYHVYINPGRGIDAEAVAVHGITE 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF++IV +F ++V ++E++IHNA+FDVGFLD EL LG + + DTL
Sbjct: 62 EFLADKPKFADIVADFEDFVRDAELVIHNASFDVGFLDAELERLGRAKLGALCAGVVDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL------ 176
+A++ + GK+ SLDALCDRY I HR LHG LLDAELLAEV+LAMTRGQ +L
Sbjct: 122 KLAKEQNPGKKASLDALCDRYEIDNAHRELHGALLDAELLAEVFLAMTRGQESLMIGLDE 181
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
P+ ++S + + + A+++E H+ L+ I K + G C+W
Sbjct: 182 EAAPRESDSEGTPV---LRAAVRVLRASADECAAHDAALADIAKANKGLCLW 230
>gi|407716217|ref|YP_006837497.1| DNA polymerase III subunit epsilon [Cycloclasticus sp. P1]
gi|407256553|gb|AFT66994.1| DNA polymerase III, epsilon subunit [Cycloclasticus sp. P1]
Length = 237
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 113/232 (48%), Positives = 157/232 (67%), Gaps = 6/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL GHRIIE+GCVE+ NR++TGNN HYY+NP RD ++ A+ +HGLT
Sbjct: 2 RQIILDTETTGLEPKQGHRIIEVGCVELVNRRLTGNNFHYYLNPQRDIDEGAVEVHGLTA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG--YSNFTKYIYRITD 120
+FL +K + I + Y+ +E+IIHNAAFDVGF++ E SL+G +++ + +TD
Sbjct: 62 EFLADKPLYENIAEELFEYLKGAEVIIHNAAFDVGFINHEYSLMGSDHTDMASWC-EVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
+L MARK+ G+RNSLDALC R+ I RTLHG LLDAE+LA+VYL MT GQ++L F
Sbjct: 121 SLHMARKMFPGQRNSLDALCKRFEIDNSQRTLHGALLDAEILADVYLMMTGGQNSL-FAD 179
Query: 181 KINNSNNIETKIKIPNN--IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ E K+ N +P+ A+S+EL +H + I+K S G+C+W K
Sbjct: 180 EHQTDTVFEPKMLDKNRQLLPVIKASSDELEKHAERIEMINKASGGQCVWDK 231
>gi|254283824|ref|ZP_04958792.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B]
gi|219680027|gb|EED36376.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR51-B]
Length = 244
Score = 227 bits (579), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 155/237 (65%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
RH+VLD ETTGL + GHRIIEIGCVE+ NR++TGN+ H Y+ P R+ + A+ +HG+T
Sbjct: 2 RHVVLDTETTGLEVTQGHRIIEIGCVELVNRKLTGNHYHQYVQPQREIDPGAMEVHGITP 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RITDT 121
FL +K F + D FL ++ +E+IIHNA FDVGF+D EL LG + R+TD+
Sbjct: 62 DFLADKPTFDRVADEFLAFIDGAELIIHNAPFDVGFIDAELDRLGARRTAVADHCRVTDS 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF--- 178
L++AR+ H G+RNSLDALC RY + RTLHG LLDAE+LA+V+L MT GQ++L
Sbjct: 122 LVLARRKHPGQRNSLDALCQRYGVDNSTRTLHGALLDAEILADVFLLMTGGQTSLGLSDD 181
Query: 179 -KPKINNSNNIETKI-KIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ ++N + I ++P + P + A++ EL +H L I S G IW++
Sbjct: 182 EEGSLDTADNPDGGIRRLPTSRPPLRVMRASAEELARHEQRLDAIAAASGGPVIWRE 238
>gi|387131073|ref|YP_006293963.1| DNA polymerase III subunit epsilon [Methylophaga sp. JAM7]
gi|386272362|gb|AFJ03276.1| DNA polymerase III epsilon subunit [Methylophaga sp. JAM7]
Length = 244
Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 159/235 (67%), Gaps = 7/235 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ D HRIIEIGCVEI R++TG H YINP R+ + A+ +HG+T
Sbjct: 8 RQIVLDTETTGLSTADDHRIIEIGCVEIIQRRLTGQTFHQYINPHREIDAGAMEVHGITH 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMEL-SLLGYSNFTKYIYRITDT 121
+FL +K +FS+I + FL ++ +E+IIHNA FDVGF++ EL + + + ++TDT
Sbjct: 68 EFLADKPEFSDIAEAFLAFIDGAELIIHNAPFDVGFINHELKKMTAPVTDIRNLCQVTDT 127
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L+MAR H G++N+LDALC RY++ +R LHG LLDAE+LA+VYLAMT GQ +L +
Sbjct: 128 LIMARDRHPGQKNNLDALCKRYDVDNTNRELHGALLDAEILADVYLAMTGGQVSLTLAAE 187
Query: 182 -INNSNNIETK---IKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
++N+ + E I + +P+K+ A++ E H +L KIDK S G+C+W K
Sbjct: 188 PLSNTQSREADQPVISTDSQLPLKVISASAAEQQAHQTMLEKIDKASGGKCVWLK 242
>gi|431930697|ref|YP_007243743.1| DNA polymerase III subunit epsilon [Thioflavicoccus mobilis 8321]
gi|431829000|gb|AGA90113.1| DNA polymerase III, epsilon subunit [Thioflavicoccus mobilis 8321]
Length = 242
Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/233 (48%), Positives = 151/233 (64%), Gaps = 7/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ +GHRIIEIGCVEI +R++T NN H Y+ P R+ + A+A+HG++
Sbjct: 2 RQIVLDTETTGLDPQEGHRIIEIGCVEIVDRRLTRNNFHQYLQPDREIDPGAIAVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RITDT 121
+FL++K +F +I + L Y+ +E+IIHNAAFD+GFLD EL L R+TDT
Sbjct: 62 EFLRDKPRFPDIAEELLRYLEGAELIIHNAAFDLGFLDHELGLWRQDGLRILDRCRVTDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK-P 180
L MAR+ H G+RNSLDALC RY+I R LHG LLDAE+LA+VYLAMT GQ +L F P
Sbjct: 122 LAMARERHPGQRNSLDALCKRYDIDNSQRDLHGALLDAEILADVYLAMTGGQVSLAFDIP 181
Query: 181 KINNSNNIE---TKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
+ +E I + +++ A+ EL H L IDK S G C+W
Sbjct: 182 EQQARRGVEPSAAAIDLSQRPRLRVVHASEAELAAHRERLEAIDKESGGGCLW 234
>gi|333893485|ref|YP_004467360.1| DNA polymerase III subunit epsilon [Alteromonas sp. SN2]
gi|332993503|gb|AEF03558.1| DNA polymerase III, epsilon subunit [Alteromonas sp. SN2]
Length = 238
Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 107/232 (46%), Positives = 159/232 (68%), Gaps = 6/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHR+IEIGCVE+ NR++TGN+ H YINPGR E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPKEGHRVIEIGCVELVNRKLTGNHFHVYINPGRQIEQEAIDVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSN--FTKYIYRITD 120
+FL +K F ++ ++F+N++ ++++IHNA FDVGF+D E + + TK I + D
Sbjct: 62 EFLTDKPTFRDVAEDFVNFIRGAQLVIHNAPFDVGFMDHEFGMEPKTRGVITKDICSVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +ARK+H G++N+LDALC RY I HR LHG LLDAE+LA+VYL MT GQ+ LN
Sbjct: 122 TLAVARKMHPGQKNNLDALCKRYGIDNSHRELHGALLDAEILADVYLLMTGGQTKLNLAS 181
Query: 181 KINNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
K + N + ++ N + + A+++EL QH L ++K + G+C+W+
Sbjct: 182 KGSGENQSDALRRLNRNGNKLKVIKASADELAQHESRLDIVEK-AGGKCLWR 232
>gi|89094533|ref|ZP_01167472.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Neptuniibacter caesariensis]
gi|89081269|gb|EAR60502.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Oceanospirillum sp. MED92]
Length = 236
Score = 226 bits (575), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 155/229 (67%), Gaps = 3/229 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL +GH IIEIGCVE+ NR++TG H YI P RD + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEPSEGHNIIEIGCVEMFNRRLTGKTYHQYIKPDRDVDAEAIQVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K KF E+++ F+ +V +E+IIHNAAFD+GFLD EL GY + +TD+L
Sbjct: 62 EFLEDKPKFHEVMEEFVEFVRGAELIIHNAAFDIGFLDTELDRNGYPERMENFSLVTDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ARK H G++N+LDALC+RY I+ HR LHG LLD+E+LA+VYLA+T GQ+NL+ +
Sbjct: 122 KLARKKHPGQKNNLDALCNRYGINNSHRELHGALLDSEILADVYLALTGGQTNLSLAGEG 181
Query: 183 NNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
++ IK +++P+ + N+ +H+ L +DK S G C+W
Sbjct: 182 DDGEGAGAVIKRLSGADDLPLVQISENDQQEHDKFLKMLDKKSGGECLW 230
>gi|319944001|ref|ZP_08018281.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia
mirabilis ATCC 51599]
gi|319742762|gb|EFV95169.1| DNA-directed DNA polymerase III epsilon subunit [Lautropia
mirabilis ATCC 51599]
Length = 238
Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 110/231 (47%), Positives = 145/231 (62%), Gaps = 5/231 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL GHRIIEIGCVE+ NR+IT NNLH YINP R+ ++ A A+HG+T
Sbjct: 6 RQVVLDTETTGLEASKGHRIIEIGCVEMVNRRITRNNLHLYINPEREVDEGAAAVHGMTW 65
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L++K F++IVD FL++ +EIIIHNA+FD GFLD EL+ LG F ++ +TD+L
Sbjct: 66 DDLRDKPTFAQIVDQFLDFCRGAEIIIHNASFDTGFLDAELARLGRGTFASHVACVTDSL 125
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MAR+ + GKRN+LDALC+R + HRTLHG LLD+ELLAEVYL MTRGQ + +
Sbjct: 126 AMARERYPGKRNNLDALCERLMVPNKHRTLHGALLDSELLAEVYLGMTRGQGSFDIGSSA 185
Query: 183 NNSNNIETKIKI-----PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ P + ++LA E H L ++K W
Sbjct: 186 EDDEGGAVADAGGGRWPPTGLRVRLATDAERQLHEQGLVALEKQFKSSMRW 236
>gi|254491084|ref|ZP_05104265.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxidans
DMS010]
gi|224463597|gb|EEF79865.1| DNA polymerase III, epsilon subunit [Methylophaga thiooxydans
DMS010]
Length = 245
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 108/233 (46%), Positives = 159/233 (68%), Gaps = 8/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG++ D HRIIEIGCVE+ NR++TG H YINP RD + A+ +HG+T
Sbjct: 8 RQVILDTETTGISTADDHRIIEIGCVEMVNRRLTGQTFHQYINPQRDIDAGAIEVHGITN 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYRITDT 121
+FL +K F+EI + FL+++ +E++IHNA FDVGF++ EL+ L G + + + + DT
Sbjct: 68 EFLADKPLFTEIAEEFLSFIEGAELVIHNAPFDVGFINHELAKLDGETRRVETLSTVLDT 127
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF--- 178
L MAR H G++N+LDALC RY+++ +R LHG LLDAE+LA+VYLAMT GQ +L
Sbjct: 128 LKMARDKHPGQKNNLDALCKRYDVNNANRELHGALLDAEILADVYLAMTGGQVSLTLMAK 187
Query: 179 ---KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
PK + T++K + + +K AN +EL H +L K++K S+G+C+W
Sbjct: 188 EDATPKKGDGQAEITQLKRESLMVLK-ANDDELAAHQDMLEKVNKASDGQCVW 239
>gi|387126437|ref|YP_006295042.1| DNA polymerase III subunit epsilon [Methylophaga sp. JAM1]
gi|386273499|gb|AFI83397.1| DNA polymerase III epsilon subunit [Methylophaga sp. JAM1]
Length = 243
Score = 225 bits (574), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 155/235 (65%), Gaps = 6/235 (2%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
R IVLD ETTGL+ D HRIIEIGCVE+ NR++TG H YINP R+ + A+ +HG+T
Sbjct: 7 QRQIVLDTETTGLSTADDHRIIEIGCVELVNRRLTGETFHQYINPQREIDAGAIEVHGIT 66
Query: 62 TKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDT 121
+ L +K F++I +FL ++ +E+IIHNAAFDVGFL+ EL+ LG++ I + DT
Sbjct: 67 NESLADKPLFADIATDFLRFIEGAELIIHNAAFDVGFLNHELTKLGHTTKIDDICSVMDT 126
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN---- 177
L +AR H G++N+LDALC RY + +R LHG LLDAE+LA+VYL MT GQ +L+
Sbjct: 127 LKLARDKHPGQKNNLDALCKRYGVDNSNRELHGALLDAEILADVYLMMTGGQVSLSLAAE 186
Query: 178 -FKPKINNSNNIETKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F+P+ + N T I+ P + + A++ EL H +L K+ S+G C+W K
Sbjct: 187 QFEPQHDAQQNELTTIERPRTELKVIEADAAELAAHQAMLEKLQASSDGNCVWLK 241
>gi|394988926|ref|ZP_10381761.1| hypothetical protein SCD_01339 [Sulfuricella denitrificans skB26]
gi|393792305|dbj|GAB71400.1| hypothetical protein SCD_01339 [Sulfuricella denitrificans skB26]
Length = 235
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 155/228 (67%), Gaps = 1/228 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGL+ GHRIIE+ VE+ NR++TGN+ H+Y+NP R+ + A +HG++
Sbjct: 2 RQVILDTETTGLDANLGHRIIEVAAVEMINRRLTGNHFHHYVNPQREIDPGAQQVHGISL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F ++ +F+ ++S +E++IHNA FD+GFL+MEL L+G KY + DTL
Sbjct: 62 EFLQDKPFFRDVAQDFIEFISGAELVIHNAPFDLGFLNMELKLIGLEPVGKYSPDVVDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA+ +H G++N+LDALC RY + RTLHG LLD ELLAEVYLAMTRGQ++L +
Sbjct: 122 KMAKDLHPGQKNNLDALCRRYFVDNASRTLHGALLDTELLAEVYLAMTRGQNSLMIESVE 181
Query: 183 NNSNNIETKIK-IPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
N+ + +P+++ + A +E+ H L +IDK S G C+W+
Sbjct: 182 EGGNHADLGGDFMPHDLMVLAATPDEMEMHRAYLDEIDKASKGACLWR 229
>gi|145589210|ref|YP_001155807.1| DNA polymerase III subunit epsilon [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
gi|145047616|gb|ABP34243.1| DNA polymerase III, epsilon subunit [Polynucleobacter necessarius
subsp. asymbioticus QLW-P1DMWA-1]
Length = 236
Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 155/231 (67%), Gaps = 8/231 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGLN G R+IEIGCVE+ +R++T HYYINP RD + A A+HGL+
Sbjct: 2 RQVILDTETTGLNPATGDRVIEIGCVEVIDRRLTDRTFHYYINPERDIDAGAFAVHGLSR 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F I + + +V +EI+IHNAAFD+GFLD E +LL F ++ DTL
Sbjct: 62 EFLSDKPVFGNIAEQLIEFVDGAEIVIHNAAFDLGFLDNEFALLKRPPFRGLASKVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-----N 177
L AR++ GKRNSLDALC+R++IS HRTLHG LLDA+LLAEVY+AMTRGQ +L +
Sbjct: 122 LDARQMFPGKRNSLDALCERFSISNKHRTLHGALLDAQLLAEVYIAMTRGQEDLSIDLID 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ ++S +++ ++P ++ + A+ ++ H IL++I K S +W
Sbjct: 182 YTVGADSSGHMK---ELPTDLRVLAASDDDCQLHEKILAEIAKASKKDPVW 229
>gi|336317448|ref|ZP_08572304.1| DNA polymerase III, epsilon subunit [Rheinheimera sp. A13L]
gi|335878381|gb|EGM76324.1| DNA polymerase III, epsilon subunit [Rheinheimera sp. A13L]
Length = 234
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 157/234 (67%), Gaps = 7/234 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+ R IVLD ETTGL+ +GHRIIEIGCVE+ NR++TGNN H Y+ P R ++ A+A+HG+
Sbjct: 2 LKRQIVLDTETTGLSPQEGHRIIEIGCVELINRRLTGNNFHVYLQPDRLIDQEAIAVHGI 61
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRI 118
T +FL K +F+EI F Y++ +E++IHNAAFDVGF++ E +LL S T I +
Sbjct: 62 TNEFLIGKQRFAEIAQQFCQYIAGAELVIHNAAFDVGFINHEFNLLRPALSPVTD-ICGV 120
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL MAR+ H G++N+LDALC RY+I+ HRTLHG LLDAE+LA+VYLAMT GQ +LN
Sbjct: 121 LDTLKMAREAHPGQKNNLDALCRRYDINNSHRTLHGALLDAEILADVYLAMTGGQVSLNL 180
Query: 179 ---KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ N + ++K + +P+ A+ EL H L + K G C+W+
Sbjct: 181 ANDEQAAAQQNVVVGQLKRTSRLPVIFASDAELQSHEQRLDLVQK-KGGSCLWR 233
>gi|403059610|ref|YP_006647827.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
subsp. carotovorum PCC21]
gi|402806936|gb|AFR04574.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
subsp. carotovorum PCC21]
Length = 245
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 159/238 (66%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N++ +GH+IIEIG VE+ NR++TG + H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPDRLVDPEAYNVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K +++IVD+FL+++ +E++IHNA FD+GF+D E LL T+ +
Sbjct: 67 GISDEFLADKPTYADIVDDFLDFIRGAELVIHNATFDIGFMDYEFRLLNRDLPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMARKI GKRNSLDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLT 186
Query: 178 F------KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + K N+ I+ ++ + + + A+ +EL+ H L I K G C+W+
Sbjct: 187 FSMEGETQQKSENTETIQRIVRPQSALKVLYADESELLAHEQRLDLIAK-KGGSCLWR 243
>gi|83645320|ref|YP_433755.1| DNA polymerase III subunit epsilon [Hahella chejuensis KCTC 2396]
gi|83633363|gb|ABC29330.1| DNA polymerase III, epsilon subunit [Hahella chejuensis KCTC 2396]
Length = 240
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 158/234 (67%), Gaps = 8/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRIIEIGCVE+ +R +TGN+ H YINP R+ + A +HG++
Sbjct: 2 RQIVLDTETTGLETSQGHRIIEIGCVEVIDRSLTGNHYHVYINPEREVDAGAFEVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG--YSNFTKYIYRITD 120
+FL +K KF ++ +FL+++S +E++IHNAAFDVGF+D E SLLG + + Y + D
Sbjct: 62 EFLADKPKFKQVAQDFLDFISGAELVIHNAAFDVGFIDYEFSLLGAPFGKVSDYC-SVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MARK H G++N+LDALC RY I HR LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 121 TLMMARKKHPGQKNNLDALCKRYGIDNSHRDLHGALLDSEILADVYLAMTGGQTSLSLHS 180
Query: 181 KINNSNNIETKIKIPN----NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + ++++ N ++ + A+ EL +H L ++K + G +W+K
Sbjct: 181 EDGGTEEEASEVRRINTQRPSLRVIRASEAELAEHARQLDAVEK-AAGFSLWRK 233
>gi|254448791|ref|ZP_05062248.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
HTCC5015]
gi|198261632|gb|EDY85920.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
HTCC5015]
Length = 239
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 158/237 (66%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL+ GHRIIEIGCVE++NR++TGN LH Y+ P R+ + A+ +H +T
Sbjct: 2 RQVVLDTETTGLDPKQGHRIIEIGCVELENRRLTGNKLHMYLQPDREIDDGAIEVHQITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDT 121
+FL +K +F ++VD FL++V SE++IHNAAFDVGF+D EL+LL + TK + DT
Sbjct: 62 EFLADKPRFGDVVDEFLDFVKGSELVIHNAAFDVGFIDSELNLLDRNLGQTKDYCGVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L MARK+H GKRN LD+LC RY+I+ HRTLHG LLDAE+LA+VYL MT GQ +L F K
Sbjct: 122 LAMARKMHPGKRNDLDSLCKRYDINNSHRTLHGALLDAEILADVYLMMTGGQVSLGFDAK 181
Query: 182 INNSNNIE-------TKIKIPNNIPIKLANSNELVQHNMILSKI-DKHSNGRCIWKK 230
+ E ++ + P + + A+ E +H +L+ + K + C+W +
Sbjct: 182 QKQEADAEQGGAHRISQDRAP--LQVITASPEEQERHEKLLANLRGKDGDQPCLWDQ 236
>gi|253689504|ref|YP_003018694.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
subsp. carotovorum PC1]
gi|251756082|gb|ACT14158.1| DNA polymerase III, epsilon subunit [Pectobacterium carotovorum
subsp. carotovorum PC1]
Length = 245
Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 114/238 (47%), Positives = 158/238 (66%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N++ +GH+IIEIG VE+ NR++TG + H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPDRLVDPEAYNVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K +++IVD+FL+++ +E++IHNA FD+GF+D E LL T+ +
Sbjct: 67 GISDEFLADKPTYADIVDDFLDFIRGAELVIHNATFDIGFMDYEFRLLNRDLPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMARKI GKRNSLDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLT 186
Query: 178 F------KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + K N+ I+ ++ + + + A+ ELV H L I K G C+W+
Sbjct: 187 FSMEGETQQKNENTETIQRIVRPQSALKVLYADEAELVAHEQRLDLIAK-KGGSCLWR 243
>gi|82702745|ref|YP_412311.1| DNA polymerase III subunit epsilon [Nitrosospira multiformis ATCC
25196]
gi|82410810|gb|ABB74919.1| DNA polymerase III, epsilon subunit [Nitrosospira multiformis ATCC
25196]
Length = 234
Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 153/229 (66%), Gaps = 3/229 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I +D ETTGL GHRIIEIG VE+ +R++TG H+Y+NP R+ E+ AL +HG+T+
Sbjct: 2 RQIFIDTETTGLEPKLGHRIIEIGAVEMMSRRLTGRRFHHYLNPEREIEEGALQVHGITS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+++V L ++ +E+I+HNAAFDV FLD EL L + + +TDTL
Sbjct: 62 EFLLDKRKFADVVHELLEFIDGAELIMHNAAFDVAFLDHELGLANLPALCECCHSVTDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA+++ GKRNSLDALC+RY + R LHG LLDAELLAEVYLAMTRGQ +L ++
Sbjct: 122 KMAKELFPGKRNSLDALCERYEVDNSRRALHGALLDAELLAEVYLAMTRGQESLLM--EL 179
Query: 183 NNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ I + + + + A++ EL H L I+K S G+C+W +
Sbjct: 180 EAPSPLDLDISLHDLQLVVLPASAEELEAHARQLEMIEKESKGKCLWMR 228
>gi|227112969|ref|ZP_03826625.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
subsp. brasiliensis PBR1692]
Length = 245
Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 158/238 (66%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N++ +GH+IIEIG VE+ NR++TG + H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNMLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPDRLVDPEAYNVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K +++IVD+FL+++ +E++IHNA FD+GF+D E LL T+ +
Sbjct: 67 GISDEFLADKPTYADIVDDFLDFIRGAELVIHNATFDIGFMDYEFRLLNRDLPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMARKI GKRNSLDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLT 186
Query: 178 F------KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + K N+ I+ ++ + + + A+ EL+ H L I K G C+W+
Sbjct: 187 FSMEGETQQKSENTETIQRIVRPQSALTVLYADEAELLAHEQRLDLIAK-KGGSCLWR 243
>gi|406914997|gb|EKD54126.1| DNA polymerase III, epsilon chain [uncultured bacterium]
Length = 234
Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 154/235 (65%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL I +GHRIIEIGC+E+ NR++TG H YINP R E+ ALAIHG+T
Sbjct: 2 RQIVLDTETTGLQIEEGHRIIEIGCIELINRKLTGKRYHQYINPERPIEEEALAIHGITE 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG--YSNFTKYIYRITD 120
FLKNK F EI F+ +++N+E+IIHNA FD F++ EL L + + T Y ITD
Sbjct: 62 DFLKNKPPFREIAKEFIEFITNAELIIHNAPFDTAFINHELQLTQQKWKSLTTYCC-ITD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS-----N 175
TLL+AR++H G+RNSLDALC RY + R HG LLDA LLAEVYL MT GQS N
Sbjct: 121 TLLLARQLHVGQRNSLDALCKRYGVDHSSRDFHGALLDARLLAEVYLNMTGGQSSLFEEN 180
Query: 176 LNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
L+ P ++ K N+ + LA++NEL H++ L +I + GR +W++
Sbjct: 181 LSINPIREEKIQLKDKQTQKRNLIVLLADANELNAHHLKLKEIAE--KGRSLWEE 233
>gi|388545102|ref|ZP_10148386.1| DNA polymerase III subunit epsilon [Pseudomonas sp. M47T1]
gi|388276742|gb|EIK96320.1| DNA polymerase III subunit epsilon [Pseudomonas sp. M47T1]
Length = 252
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/240 (45%), Positives = 156/240 (65%), Gaps = 13/240 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R++VLD ETTG+ + DGHRIIEIGCVE+ R++TG N H Y+ P RDS++ A+ +HG+T
Sbjct: 4 RYVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRNFHVYLQPDRDSDEGAIGVHGITD 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ + F ++ +E+IIHNAAFDVGF++ E +L+G ++ T Y +
Sbjct: 64 QFLIGKPRFAEVAEEFFEFIKGAELIIHNAAFDVGFINNEFALMGAQERADVTTYC-SVL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 123 DTLAMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 182
Query: 180 PKINN-----SNNIETKI-KIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ S N ++I ++P PI A EL +H L I K + +W +
Sbjct: 183 GNASDGAGDGSGNQGSEIRRLPPERRPAPIIRATEAELAEHAARLEIIAKSAGAPALWSQ 242
>gi|296135837|ref|YP_003643079.1| DNA polymerase III subunit epsilon [Thiomonas intermedia K12]
gi|295795959|gb|ADG30749.1| DNA polymerase III, epsilon subunit [Thiomonas intermedia K12]
Length = 239
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 150/236 (63%), Gaps = 11/236 (4%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGLN G RIIE+ VE+ NR++TG + H Y+NP R S AL +HGL
Sbjct: 1 MTRQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPDRASHPDALKVHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
T +FL +K +F +I D+ L +V ++E+IIHNA FD FLD EL L F +++ +TD
Sbjct: 61 TEEFLSDKPRFEQIADDLLEFVRDAEVIIHNAPFDCAFLDAELERLNRPAFRQHVPLVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA+ GK N+LDALC R+ I HRTLHG LLDAELLAEVYL++TRGQ +L
Sbjct: 121 TLAMAKLQFPGKFNNLDALCKRFGIDNTHRTLHGALLDAELLAEVYLSLTRGQESL---- 176
Query: 181 KINNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + ++ + + ++P++ +S+E H L +DK S G+ IW+
Sbjct: 177 -VIDLETPQQQMSVASHRLDHFSLPVRAPSSDEQAAHEAFLQLLDKKSQGKSIWRP 231
>gi|149927491|ref|ZP_01915745.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
gi|149823764|gb|EDM82990.1| DNA polymerase III subunit epsilon [Limnobacter sp. MED105]
Length = 240
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 107/229 (46%), Positives = 152/229 (66%), Gaps = 1/229 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R++VLD ETTGL + GHRIIEIGC+E+ RQ+T ++ H YINP R+ ++ A +HG++
Sbjct: 2 RYVVLDTETTGLEVRQGHRIIEIGCIEVNGRQVTDHHFHQYINPEREVDEGAFQVHGISD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+ L +K KF +I +FL++V S +IIHNA+FD+GFLD EL LG Y+ + D+L
Sbjct: 62 EMLADKPKFKQIAKDFLDFVQGSTLIIHNASFDIGFLDGELERLGLGKMADYVDGVIDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MAR++ GKRN+LDALCDR ++ HR LHG LLD+++LAEVYLAMTRGQ +L
Sbjct: 122 GMAREMFPGKRNNLDALCDRLGVNNAHRQLHGALLDSQILAEVYLAMTRGQDSLVIDLNA 181
Query: 183 NNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ +IK+ N+P ELV H L+ I+K + G +W K
Sbjct: 182 QHDDDGVERIKLSALNLPEPEPTEEELVLHQAYLADIEKAAKGPSVWSK 230
>gi|49082166|gb|AAT50483.1| PA1816, partial [synthetic construct]
Length = 247
Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 157/239 (65%), Gaps = 12/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE++ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
++LK+K +F E+ ++F ++ +++IIHNAAFD+GF++ E +LLG S+ T+Y +
Sbjct: 62 EYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCS-VL 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTLLMAR+ H G+RN+LDALC RY + R LHG LLDAE+LA+VYLAMT GQ++L+
Sbjct: 121 DTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSLA 180
Query: 180 PKINNSNNIETKIKIP--------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + P P+ AN+ EL H L+ I+K + G +W +
Sbjct: 181 GSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLWAQ 239
>gi|332141113|ref|YP_004426851.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Deep ecotype']
gi|410861424|ref|YP_006976658.1| DNA polymerase III subunit epsilon [Alteromonas macleodii AltDE1]
gi|327551135|gb|AEA97853.1| DNA polymerase III, epsilon subunit [Alteromonas macleodii str.
'Deep ecotype']
gi|410818686|gb|AFV85303.1| DNA polymerase III subunit epsilon [Alteromonas macleodii AltDE1]
Length = 239
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 155/232 (66%), Gaps = 6/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHRIIEIGCVE+ NR++TGN+ H YINPGR E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINPGRHIEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSN--FTKYIYRITD 120
+FL +K F+++ F+N++ ++++IHNA FDVGF+D E + + T I + D
Sbjct: 62 EFLTDKPTFAQVAQEFVNFIKGAQLVIHNAPFDVGFMDHEFGMEPSTKGVITNQICDVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +AR++H G++N+LDALC RY I HRTLHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 122 TLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKLKLAS 181
Query: 181 ---KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+S I + N + + A+++EL QH L ++K + G+C+W+
Sbjct: 182 SGGSETDSTAIRRVQRKTNKLKVIKASADELTQHEARLDIVEK-AGGKCLWR 232
>gi|15597013|ref|NP_250507.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO1]
gi|107101248|ref|ZP_01365166.1| hypothetical protein PaerPA_01002281 [Pseudomonas aeruginosa PACS2]
gi|218892230|ref|YP_002441097.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa LESB58]
gi|254234910|ref|ZP_04928233.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719]
gi|296389793|ref|ZP_06879268.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAb1]
gi|313110514|ref|ZP_07796399.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016]
gi|355644064|ref|ZP_09053604.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. 2_1_26]
gi|386059291|ref|YP_005975813.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa M18]
gi|386065661|ref|YP_005980965.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
NCGM2.S1]
gi|392984711|ref|YP_006483298.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa DK2]
gi|416854330|ref|ZP_11910808.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa 138244]
gi|416872402|ref|ZP_11916640.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa 152504]
gi|418585597|ref|ZP_13149645.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
MPAO1/P1]
gi|418591351|ref|ZP_13155250.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
MPAO1/P2]
gi|419755318|ref|ZP_14281673.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
PADK2_CF510]
gi|420140128|ref|ZP_14647904.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa CIG1]
gi|421154494|ref|ZP_15613999.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa ATCC
14886]
gi|421161171|ref|ZP_15620137.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa ATCC
25324]
gi|421168543|ref|ZP_15626619.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa ATCC
700888]
gi|421181087|ref|ZP_15638605.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa E2]
gi|421516457|ref|ZP_15963143.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO579]
gi|424941044|ref|ZP_18356807.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa NCMG1179]
gi|451982746|ref|ZP_21931048.1| DNA polymerase III epsilon subunit [Pseudomonas aeruginosa 18A]
gi|9947801|gb|AAG05205.1|AE004608_4 DNA polymerase III, epsilon chain [Pseudomonas aeruginosa PAO1]
gi|7229492|gb|AAF42851.1| mismatch repair protein MutD [Pseudomonas aeruginosa PAO1]
gi|126166841|gb|EAZ52352.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa C3719]
gi|218772456|emb|CAW28238.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa LESB58]
gi|310882901|gb|EFQ41495.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 39016]
gi|334844165|gb|EGM22743.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa 138244]
gi|334845931|gb|EGM24489.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa 152504]
gi|346057490|dbj|GAA17373.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa NCMG1179]
gi|347305597|gb|AEO75711.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa M18]
gi|348034220|dbj|BAK89580.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
NCGM2.S1]
gi|354829392|gb|EHF13467.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. 2_1_26]
gi|375044286|gb|EHS36895.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
MPAO1/P1]
gi|375049891|gb|EHS42379.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
MPAO1/P2]
gi|384398015|gb|EIE44423.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
PADK2_CF510]
gi|392320216|gb|AFM65596.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa DK2]
gi|403247138|gb|EJY60818.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa CIG1]
gi|404350185|gb|EJZ76522.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PAO579]
gi|404521895|gb|EKA32449.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa ATCC
14886]
gi|404529352|gb|EKA39398.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa ATCC
700888]
gi|404540633|gb|EKA50030.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa ATCC
25324]
gi|404544315|gb|EKA53504.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa E2]
gi|451759523|emb|CCQ83571.1| DNA polymerase III epsilon subunit [Pseudomonas aeruginosa 18A]
gi|453047179|gb|EME94894.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
PA21_ST175]
Length = 246
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 157/239 (65%), Gaps = 12/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE++ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
++LK+K +F E+ ++F ++ +++IIHNAAFD+GF++ E +LLG S+ T+Y +
Sbjct: 62 EYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCS-VL 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTLLMAR+ H G+RN+LDALC RY + R LHG LLDAE+LA+VYLAMT GQ++L+
Sbjct: 121 DTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSLA 180
Query: 180 PKINNSNNIETKIKIP--------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + P P+ AN+ EL H L+ I+K + G +W +
Sbjct: 181 GSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLWAQ 239
>gi|331007390|ref|ZP_08330576.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989]
gi|330418798|gb|EGG93278.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC1989]
Length = 239
Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 152/238 (63%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRIIEIGCVE++NR++TG + H YI P R+ E A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEPSKGHRIIEIGCVELENRKLTGRHYHQYIQPEREIEAQAMEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG---YSNFTKYIYRIT 119
++LK K F +I+D F+ +V +E+IIHNA FDVGF++ EL+ G Y N T Y +
Sbjct: 62 EYLKGKPTFVQIMDEFMAFVDGAELIIHNAPFDVGFINNELAKYGDKKYQNITHYC-GVI 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ------ 173
DTL+MAR+ H G++N+LDALC RY + R LHG LLD+E+LA+VYL MT GQ
Sbjct: 121 DTLVMARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDSEILADVYLLMTGGQRALSLS 180
Query: 174 -SNLNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ I ++P N+PI A+ EL QH L+ IDK S G+C+W K
Sbjct: 181 SASSEDDSGSRQVTGIRRLAEVP-NLPIIQASPEELAQHEQKLAAIDKASQGQCVWLK 237
>gi|254240209|ref|ZP_04933531.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192]
gi|126193587|gb|EAZ57650.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa 2192]
Length = 246
Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 156/239 (65%), Gaps = 12/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE++ R +TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVELEGRHLTGRHFHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
++LK+K +F E+ ++F ++ +++IIHNAAFD+GF++ E +LLG S+ T+Y +
Sbjct: 62 EYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYC-SVL 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTLLMAR+ H G+RN+LDALC RY + R LHG LLDAE+LA+VYLAMT GQ++L+
Sbjct: 121 DTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSLA 180
Query: 180 PKINNSNNIETKIKIP--------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + P P+ AN+ EL H L+ I+K + G +W +
Sbjct: 181 GSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLWAQ 239
>gi|114321140|ref|YP_742823.1| DNA polymerase III subunit epsilon [Alkalilimnicola ehrlichii
MLHE-1]
gi|114227534|gb|ABI57333.1| DNA polymerase III, epsilon subunit [Alkalilimnicola ehrlichii
MLHE-1]
Length = 243
Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 149/236 (63%), Gaps = 9/236 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL G R+IEIGCVE+ +R+ TGNN H Y+NP R+ + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEWSQGDRVIEIGCVELVDRRPTGNNFHQYLNPDREVPQEAVEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDT 121
FL +K +F E+ + F+ Y+ SE++IHNAAFDVGFLD ELS LG + + DT
Sbjct: 62 DFLADKPRFHEVAERFVEYIRGSELVIHNAAFDVGFLDYELSRLGRGWGRVEDFASVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
LL+AR+ H G+RNSLDALC RY++ R LHG LLDA +LA+VYLAMT GQ L F
Sbjct: 122 LLLARQRHPGQRNSLDALCKRYDVDNTQRELHGALLDARILADVYLAMTGGQKAL-FTLD 180
Query: 182 INNSNNIETK----IKIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ E + ++P++ P + A E H +L +IDK S G C W++
Sbjct: 181 EEEAQAHEGEGGGIRRLPSDRPRLAVVRAGEAERRAHEALLDRIDKASGGGCRWRR 236
>gi|386287858|ref|ZP_10065027.1| DNA polymerase III, epsilon subunit [gamma proteobacterium BDW918]
gi|385279121|gb|EIF43064.1| DNA polymerase III, epsilon subunit [gamma proteobacterium BDW918]
Length = 243
Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 152/237 (64%), Gaps = 10/237 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ GHRIIEIGCVE+ +R++TG + H YINP R+ E A+ +HG+T
Sbjct: 2 RQIVLDTETTGLDPGQGHRIIEIGCVELVDRKLTGRHYHQYINPDREVEAGAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFT-KYIYRITDT 121
LK+K F++I D+FL+++ +E++IHNA FD+GFLD E L + I + DT
Sbjct: 62 DMLKDKPLFAQIADDFLDFIRGAELVIHNAPFDIGFLDAEFKYLARNTPKIASICGVVDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L+MAR+ H G+RNSLDALC RY + R LHG LLDAE+LA+VYL MT GQ+ L+
Sbjct: 122 LVMARQKHPGQRNSLDALCSRYYVDNSQRDLHGALLDAEILADVYLLMTGGQTALSLAAD 181
Query: 182 INNSNNIETKI--------KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ S E + I + +A+S+EL H L++IDK S G C+W++
Sbjct: 182 -DGSQQGEGGVAGEHRQITSIQKRPRVIMASSDELALHQKQLAEIDKSSGGNCVWQR 237
>gi|229590113|ref|YP_002872232.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens SBW25]
gi|229361979|emb|CAY48879.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens SBW25]
Length = 248
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 160/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P RDS++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPDRDSDEGAIGVHGITD 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FLK K +F+E+ D F +++ +++IIHNAAFDVGF++ E +L+G ++ +K+ I
Sbjct: 64 EFLKGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQTDRADISKHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINN-------SNNIETKI-KIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
++ S N ++I ++P + PI A+ +L +H L I K + +W
Sbjct: 183 GNASDGTGSAEGSGNRPSEIRRLPADRKPTPIIRASEQDLAEHAARLEAIAKSAGAPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|160899427|ref|YP_001565009.1| DNA polymerase III subunit epsilon [Delftia acidovorans SPH-1]
gi|160365011|gb|ABX36624.1| DNA polymerase III, epsilon subunit [Delftia acidovorans SPH-1]
Length = 238
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 108/232 (46%), Positives = 153/232 (65%), Gaps = 3/232 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R I+LD ETTGL+ +G R+IE+GCVE+ NR++TGNNLH Y N GRDS AL +HG+
Sbjct: 1 MSRQIILDTETTGLSADNGDRLIELGCVEMVNRKLTGNNLHLYFNAGRDSHPDALRVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
TT+FLK+K +F VD Y+ +E+IIHNA FD+GFL+ EL L + + + D
Sbjct: 61 TTEFLKDKPRFEHKVDEIWEYLQGAELIIHNAPFDLGFLNKELELANRPPIRQCVSGVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-- 178
TL+MA+++ GKRNSLD+LCDR + RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLVMAKEMFPGKRNSLDSLCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQEALLMAE 180
Query: 179 KPKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+P + + ++ + + + + AN EL H ++ ++DK S G+ IW+
Sbjct: 181 EPVQSEGGLVVAQVDLASFKLRVVHANDQELAAHEDVMVQMDKSSGGKTIWR 232
>gi|121997071|ref|YP_001001858.1| DNA polymerase III subunit epsilon [Halorhodospira halophila SL1]
gi|121588476|gb|ABM61056.1| DNA polymerase III, epsilon subunit [Halorhodospira halophila SL1]
Length = 243
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 152/232 (65%), Gaps = 6/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG++ +GHRIIEIGCVE+ R++TGNN H Y+NP R ++ A +HGL+
Sbjct: 2 RQILLDTETTGMDPTEGHRIIEIGCVELVRRRLTGNNFHEYLNPDRAVDEGAENVHGLSN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG--YSNFTKYIYRITD 120
+FL +K +F++I F++YV ++E+IIHNA FDVGF+D EL+ LG + Y ITD
Sbjct: 62 RFLADKPRFADIARRFVDYVQDAELIIHNAPFDVGFIDAELARLGPAWGQLEDYCT-ITD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
+L MAR++H G+R SLDALC RY++ R LHG LLD+ELLAEVYLAMT GQ L+ +
Sbjct: 121 SLQMARRMHPGQRCSLDALCKRYSVDGSRRELHGALLDSELLAEVYLAMTGGQGKLSLEG 180
Query: 181 KINNSNNIETKIKIPNNIP-IKLANSNELVQ--HNMILSKIDKHSNGRCIWK 229
+ E ++ P +++ EL + H +L +I+ G +W+
Sbjct: 181 EGLEPGGAEPVQRLSAERPRLRVPEPGELEREAHEQLLQRIEATCGGPALWR 232
>gi|410636532|ref|ZP_11347126.1| DNA polymerase III subunit epsilon [Glaciecola lipolytica E3]
gi|410144144|dbj|GAC14331.1| DNA polymerase III subunit epsilon [Glaciecola lipolytica E3]
Length = 238
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/236 (47%), Positives = 158/236 (66%), Gaps = 9/236 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGN+ H YINP R E A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPKQGHRIIEIGCVELINRKLTGNHFHVYINPERIVEAEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--IYRITD 120
++L +K KF E+ + F+N++ ++++IHNA FDVGF+D E L+ N K I + D
Sbjct: 62 EYLADKPKFREVQEGFINFIKGAQLVIHNAPFDVGFMDHEFQLVNSINPVKTHEICTVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +AR++H G++N+LDALC RY I HR LHG LLD+E+LA+VYL MT GQ++LN
Sbjct: 122 TLTLARELHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLLMTGGQTDLNLSG 181
Query: 181 KINNSNNIETKIKI----PNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
K + NN + I N K+ A+++EL QHN L I+ S+G CIW++
Sbjct: 182 KKASENNEDQSTSIQRLDSNRKAFKIIQASADELEQHNARLKLIED-SSGSCIWRQ 236
>gi|330829021|ref|YP_004391973.1| DNA polymerase III subunit epsilon [Aeromonas veronii B565]
gi|423210287|ref|ZP_17196841.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER397]
gi|328804157|gb|AEB49356.1| DNA polymerase III, epsilon subunit [Aeromonas veronii B565]
gi|404616175|gb|EKB13133.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER397]
Length = 244
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/240 (49%), Positives = 157/240 (65%), Gaps = 11/240 (4%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
++R I+LD ETTG+N G HRIIEIGCVE+ NR++TGN+ H YI P R + A+
Sbjct: 6 LNRQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHYHVYIKPDRLVDPEAI 65
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI 115
+HG+T +FL++K FS+I D FL ++ +E+I HNA FDV F+D E S LG + T I
Sbjct: 66 QVHGITDEFLRDKPSFSQIADEFLEFIRGAELIAHNAPFDVSFMDYEFSKLGLNFKTADI 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
ITDTL MAR + GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 126 CTITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTK 185
Query: 176 LNFKPKIN-NSNNIETKI-KIPNNIP-IKLANSNELVQ--HNMILSKIDKHSNGRCIWKK 230
LN + N N NN +T I ++ +N P IK+ + VQ H L + K G C+W++
Sbjct: 186 LNLATESNENENNQDTSIRRLESNRPAIKVVRACAEVQALHEARLDLVQK-KGGSCLWRQ 244
>gi|227329796|ref|ZP_03833820.1| DNA polymerase III subunit epsilon [Pectobacterium carotovorum
subsp. carotovorum WPP14]
Length = 245
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 157/238 (65%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG + H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPDRLVDPEAYNVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K +++IVD+FL+++ +E++IHNA FD+GF+D E LL T+ +
Sbjct: 67 GISDEFLADKPTYADIVDDFLDFIRGAELVIHNATFDIGFMDYEFRLLNRDLPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMARKI GKRNSLDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLLMARKIFPGKRNSLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLT 186
Query: 178 F------KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + K N+ I+ ++ + + + A+ EL+ H L I K G C+W+
Sbjct: 187 FSMEGETQQKSENTETIQRIVRPQSALKVLYADEAELLAHEQRLDLIAK-KGGSCLWR 243
>gi|116049766|ref|YP_791427.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa
UCBPP-PA14]
gi|421175057|ref|ZP_15632754.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa CI27]
gi|115584987|gb|ABJ11002.1| DNA polymerase III, epsilon chain [Pseudomonas aeruginosa
UCBPP-PA14]
gi|404533010|gb|EKA42863.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa CI27]
Length = 246
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 157/239 (65%), Gaps = 12/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE++ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
++LK+K +F E+ ++F ++ +++IIHNAAFD+GF++ E +LLG S+ ++Y +
Sbjct: 62 EYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVSEYCS-VL 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTLLMAR+ H G+RN+LDALC RY + R LHG LLDAE+LA+VYLAMT GQ++L+
Sbjct: 121 DTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSLA 180
Query: 180 PKINNSNNIETKIKIP--------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + P P+ AN+ EL H L+ I+K + G +W +
Sbjct: 181 GSGAEGDGSGRPMVSPIRRLDPARVATPVLRANAEELAAHAARLAVIEKSAGGPSLWAQ 239
>gi|421495994|ref|ZP_15943239.1| DNA polymerase III, epsilon subunit [Aeromonas media WS]
gi|407184890|gb|EKE58702.1| DNA polymerase III, epsilon subunit [Aeromonas media WS]
Length = 248
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 155/240 (64%), Gaps = 11/240 (4%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
++R I+LD ETTG+N G HRI+EIGCVE+ NR++TGN+ H YI P R + A+
Sbjct: 10 LNRQIILDTETTGMNTAGGPVYLGHRIVEIGCVEVINRKLTGNHFHVYIKPDRLVDPEAI 69
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI 115
A+HG+T FL +K FS+I D+F+ ++ +EII HNA FDV F+D E LG T I
Sbjct: 70 AVHGITDAFLADKPSFSQIADDFIAFIRGAEIIAHNAPFDVSFMDYEFGKLGLDFKTADI 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
ITDTL MAR + GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 130 CSITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTK 189
Query: 176 LNFKPKIN-NSNNIETKIK--IPNNIPIKLAN-SNELVQ-HNMILSKIDKHSNGRCIWKK 230
LN + N N +N +T I+ N P+K+ S+E+V H L + K G C+W++
Sbjct: 190 LNLASESNENDSNQDTGIRRLESNRAPLKVVRASDEVVAIHEARLDLVQK-KGGACLWRQ 248
>gi|389871353|ref|YP_006378772.1| DNA polymerase III subunit epsilon [Advenella kashmirensis WT001]
gi|388536602|gb|AFK61790.1| DNA polymerase III subunit epsilon [Advenella kashmirensis WT001]
Length = 240
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 145/232 (62%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG + +G RI+E+GCVE+ +RQ TGNNLH Y NP RDS AL +HGLTT
Sbjct: 2 RQIILDTETTGFDPAEGDRIVELGCVELIDRQFTGNNLHIYFNPDRDSSPGALEVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +F + Y+ +EI IHNA+FDV FL+ E + +G + K I DTL
Sbjct: 62 EFLSQFNRFEDEATRIFEYLKGTEIYIHNASFDVKFLNAEFARVGMPSIDKTAAAIHDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL----NF 178
MAR+ + GKRNSLD LC+R IS HRTLHG LLDAELLAEV+LAMTRGQ L +
Sbjct: 122 AMAREQYPGKRNSLDMLCERLGISNAHRTLHGALLDAELLAEVWLAMTRGQFGLVMEHSD 181
Query: 179 KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+ + + + I++A EL +H L +D+ + G +W+K
Sbjct: 182 QPRQQEGQPVVAQFDA-TVLRIEVATEAELAEHAAYLDGLDQAAGGLSLWRK 232
>gi|375106094|ref|ZP_09752355.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
JOSHI_001]
gi|374666825|gb|EHR71610.1| DNA polymerase III, epsilon subunit [Burkholderiales bacterium
JOSHI_001]
Length = 241
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 103/229 (44%), Positives = 153/229 (66%), Gaps = 2/229 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL+ +G R+IE+GC+E++NR++TGN LH Y NP R + + A+ +HGLT
Sbjct: 2 RQIFLDTETTGLSPENGDRVIELGCIEMENRRLTGNTLHLYFNPERKNHEDAVRVHGLTD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ VD + ++ +EIIIHNAAFDVGFL+ EL +G T + +++DTL
Sbjct: 62 EFLADKPLFAACVDEVVQFLEGAEIIIHNAAFDVGFLNEELRRVGRGPVTGIVAKVSDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
LMAR++ GK NSLDALC R + +RTLHG LLDA LLAEVY+ +TRGQ +L
Sbjct: 122 LMAREMFPGKSNSLDALCKRLEVDNSNRTLHGALLDAGLLAEVYIRLTRGQDSLVIDATE 181
Query: 183 NNSNNIETKIK--IPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + +++ + +P+ ++ EL H +L ++DK S G+ +W+
Sbjct: 182 SQGSGPQLELRDLLGLELPVIAPSAEELAAHARVLGELDKSSGGKTVWR 230
>gi|334131969|ref|ZP_08505731.1| DNA polymerase III subunit epsilon [Methyloversatilis universalis
FAM5]
gi|333443442|gb|EGK71407.1| DNA polymerase III subunit epsilon [Methyloversatilis universalis
FAM5]
Length = 239
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 153/233 (65%), Gaps = 4/233 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R I+LD ETTGL +G R+IEIGCVE+ R+ TG LH Y NP R+ + A+A+HG+
Sbjct: 1 MTRQIILDTETTGLEWQNGDRLIEIGCVELVGRKRTGRQLHLYCNPEREVPEGAVAVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY-IYRIT 119
TT+FL +K KF ++VD +++V ++E++IHNAAFD GF+D EL+++G + ++
Sbjct: 61 TTEFLADKPKFRDVVDQIVDFVRDAELVIHNAAFDTGFIDNELNIVGRPPLREICVWPAI 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--N 177
DT+ MAR + GKR +LDALC+R+ I HR HG LLDAELL EVYLAMTRGQ +L +
Sbjct: 121 DTVRMARDMFPGKRANLDALCERFGIENSHREFHGALLDAELLVEVYLAMTRGQESLIID 180
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+ + ++ A+ E+ +H +L++IDK S G +W+K
Sbjct: 181 LEPEPSAVRAAAAARPRGALRRVQ-ASEAEIAEHQKLLAEIDKASGGATVWRK 232
>gi|56479129|ref|YP_160718.1| DNA-directed DNA polymerase subunit epsilon [Aromatoleum aromaticum
EbN1]
gi|56315172|emb|CAI09817.1| DNA-directed DNA polymerase, epsilon chain [Aromatoleum aromaticum
EbN1]
Length = 239
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 111/228 (48%), Positives = 148/228 (64%), Gaps = 2/228 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ +G R+IEIGCVE+ NR +TG + H YINP R + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLDWRNGDRVIEIGCVELLNRNLTGRHYHVYINPERGIDAEAIAVHGITE 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K FS I F +++ ++E+IIHNA+FDVGFL+ ELS LG + DTL
Sbjct: 62 DFLADKPTFSAIAAEFEDFIRDAELIIHNASFDVGFLNHELSRLGRGKLDSLCAGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA++ + GK+ SLDALCDR+ I RTLHG LLDAELLAEVYLAMTRGQ +L +
Sbjct: 122 KMAKEQNPGKKASLDALCDRHQIDNASRTLHGALLDAELLAEVYLAMTRGQESLIMVLEE 181
Query: 183 NNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
+ E + + P+K+ A+ EL +H +L I K + G C+W
Sbjct: 182 PVPGSAEAGGVLVDRPPLKVLRASGEELAEHERVLQDIAKGTKGTCLW 229
>gi|152986464|ref|YP_001348839.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa PA7]
gi|452878532|ref|ZP_21955731.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa VRFPA01]
gi|150961622|gb|ABR83647.1| DNA polymerase III, epsilon subunit [Pseudomonas aeruginosa PA7]
gi|452184798|gb|EME11816.1| DNA polymerase III subunit epsilon [Pseudomonas aeruginosa VRFPA01]
Length = 246
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 157/239 (65%), Gaps = 12/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE++ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
++LK+K +F E+ ++F ++ +++IIHNAAFD+GF++ E +LLG S+ T+Y +
Sbjct: 62 EYLKDKPRFREVANDFFEFIRGAQLIIHNAAFDIGFINNEFALLGQQDRSDVTEYCT-VL 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTLLMAR+ H G+RN+LDALC RY + R LHG LLDAE+LA+VYLAMT GQ++L+
Sbjct: 121 DTLLMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSLA 180
Query: 180 PKINNSNNIETKIKIP--------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + P P+ A++ EL H L+ I+K + G +W +
Sbjct: 181 GSGAEGDGSGRPMVSPIRRLDPARVATPVLRASAEELAAHAARLAVIEKSAGGPSLWAQ 239
>gi|395649418|ref|ZP_10437268.1| DNA polymerase III subunit epsilon [Pseudomonas extremaustralis
14-3 substr. 14-3b]
Length = 248
Score = 221 bits (564), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 157/241 (65%), Gaps = 13/241 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P RDS++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPDRDSDEGAIGVHGITD 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FLK K +F+E+ D F +++ +++IIHNAAFD+GF++ E +L+G ++ T D
Sbjct: 64 EFLKGKPRFAEVADEFFEFINGAQLIIHNAAFDIGFINNEFALMGQTDRADISQHCTILD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 124 TLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLAG 183
Query: 181 KINN-------SNNIETKI-KIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ S N ++I ++P + PI A+ +L +H L I K + +W
Sbjct: 184 NASDGAGSAEGSGNRPSEIRRLPADRKPTPIIRASEQDLAEHAARLEAIAKSAGAPALWT 243
Query: 230 K 230
+
Sbjct: 244 Q 244
>gi|119898345|ref|YP_933558.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
gi|119670758|emb|CAL94671.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
Length = 239
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 112/228 (49%), Positives = 146/228 (64%), Gaps = 2/228 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ G R+IEIGCVE+ NR +TG + H YINP R + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLDWRTGDRVIEIGCVELVNRSLTGRHFHVYINPDRGIDAEAVAVHGITE 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+ IV+ F ++V ++E++IHNA FDVGFL+ EL LLG + DTL
Sbjct: 62 EFLADKPRFAGIVEAFEDFVRDAELVIHNANFDVGFLNCELGLLGRPKLDVLCAGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA++ + GK+ SLDALCDRY I HRTLHG LLDAELLAEVYLAMTRGQ +L
Sbjct: 122 RMAKEQNPGKKASLDALCDRYEIDNGHRTLHGALLDAELLAEVYLAMTRGQESLMIALDE 181
Query: 183 NNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
+ET + +K+ A E H L+ I K + G C+W
Sbjct: 182 PAPGQVETDGLPVMRVGVKVVRATEAECEAHAANLADIAKANKGLCLW 229
>gi|407802245|ref|ZP_11149087.1| DNA polymerase III subunit epsilon [Alcanivorax sp. W11-5]
gi|407023920|gb|EKE35665.1| DNA polymerase III subunit epsilon [Alcanivorax sp. W11-5]
Length = 246
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 154/235 (65%), Gaps = 7/235 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL +GHR+IEIGCVE+ R++TGNNLH Y+NP RD ++ AL +HG+
Sbjct: 1 MSRQIVLDTETTGLEPSEGHRVIEIGCVEMVGRRLTGNNLHLYLNPERDIDEGALQVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
T +FL +K FS + ++FL ++ +E++IHNAAFDVGFL+ EL LG + +I D
Sbjct: 61 TREFLADKPVFSAVAEDFLRFIDGAELVIHNAAFDVGFLNHELRRLGQDKPIEQRCKILD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +AR H G++N+LDALC RY I +R LHG LLDA++LAEVYL MT GQ+ L+
Sbjct: 121 TLQLARAKHPGQKNNLDALCRRYGIDNFNRELHGALLDAQILAEVYLIMTGGQARLSLGG 180
Query: 181 KINNSNNIETKIK-----IPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
+ +N+++ E + P+ +K+ A+ +EL H L I + S +W
Sbjct: 181 QDSNNSSGEASAEPIRRLAPDRPALKVIRASGDELAAHEAKLGGIARASEQGALW 235
>gi|88813349|ref|ZP_01128587.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231]
gi|88789407|gb|EAR20536.1| DNA polymerase III, epsilon subunit [Nitrococcus mobilis Nb-231]
Length = 245
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 150/236 (63%), Gaps = 9/236 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL DGHR+IEIGC E+ R+ +G H+Y+NP R+ E A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEPADGHRVIEIGCYELCYRRASGRTFHHYLNPDREVEPGAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL +K +F +I +F+ ++ ++E+IIHNA FDVGFLD E S L + Y ++TD
Sbjct: 62 EFLADKPRFCDIATDFIEFIRDAELIIHNAPFDVGFLDYEFSRLTGSWGRLADYC-QVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +AR+ H G+RNSLDALC RY + R+LHG LLDA+LLAEVYL MT GQ+ L+ +
Sbjct: 121 TLALARERHPGQRNSLDALCTRYAVDNAQRSLHGALLDAQLLAEVYLLMTGGQTALSLES 180
Query: 181 KINNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
S ++ + +P+ A+S E +H L ++D+ G C+W++
Sbjct: 181 GAGLSADLALVGGVRRLDPARPRLPVVRASSAEQAEHRHWLDELDQAVGGCCVWRQ 236
>gi|407699801|ref|YP_006824588.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Black Sea 11']
gi|407248948|gb|AFT78133.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Black Sea 11']
Length = 239
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 154/232 (66%), Gaps = 6/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHRIIEIGCVE+ NR++TGN+ H YINPGR E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINPGRHIEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSN--FTKYIYRITD 120
+FL +K FS++ F+N++ ++++IHNA FDVGF+D E + + T I + D
Sbjct: 62 EFLADKPTFSQVAQEFVNFIKGAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQICDVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +AR++H G++N+LDALC RY I HRTLHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 122 TLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKLKLAS 181
Query: 181 KINNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + +I N + + A ++E+ QH L ++K + G+C+W+
Sbjct: 182 SSGSDADSTAIRRIQRSANKLKVIKATADEITQHEARLDIVEK-AGGKCLWR 232
>gi|423207434|ref|ZP_17193990.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC34]
gi|404620501|gb|EKB17398.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC34]
Length = 244
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 157/240 (65%), Gaps = 11/240 (4%)
Query: 1 MHRHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
++R I+LD ETTG+N + GHRIIEIGCVE+ NR++TGN+ H YI P R + A+
Sbjct: 6 LNRQIILDTETTGMNTGGGPVYLGHRIIEIGCVEVINRKLTGNHYHVYIKPDRPVDPEAV 65
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI 115
+HG+T +FL++K FS+I D FL ++ +E+I HNA FDV F+D E S LG + T I
Sbjct: 66 QVHGITDEFLRDKPSFSQIADEFLEFIRGAELIAHNAPFDVSFMDYEFSKLGLNFKTADI 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
ITDTL MAR + GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 126 CTITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTK 185
Query: 176 LNFKPKIN-NSNNIETKI-KIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
LN + + N +N +T I ++ +N P + A++ QH L + K G C+W++
Sbjct: 186 LNLATESSENESNQDTSIRRLESNRPALKVIRASAEVQAQHEARLDLVQK-KGGSCLWRQ 244
>gi|423202221|ref|ZP_17188800.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER39]
gi|404615373|gb|EKB12345.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AER39]
Length = 244
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 159/240 (66%), Gaps = 11/240 (4%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
++R I+LD ETTG+N G HRIIEIGCVE+ NR++TGN+ H YI P R + A+
Sbjct: 6 LNRQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHYHVYIKPDRLVDPEAI 65
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI 115
+HG+T +FL++K FS+I D FL+++ +E+I HNA FDV F+D E S LG + T I
Sbjct: 66 QVHGITDEFLRDKPSFSQIADEFLDFIRGAELIAHNAPFDVSFMDYEFSKLGLNFKTADI 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
ITDTL MAR + GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 126 CTITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTK 185
Query: 176 LNFKPKIN-NSNNIETKI-KIPNNIP-IKLANSNELVQ--HNMILSKIDKHSNGRCIWKK 230
LN + N N +N +T I ++ +N P +K+ ++ VQ H L + K G C+W++
Sbjct: 186 LNLATESNENESNQDTSIRRLESNRPALKVVRASTEVQALHEARLDLVQK-KGGSCLWRQ 244
>gi|410092125|ref|ZP_11288665.1| DNA polymerase III subunit epsilon [Pseudomonas viridiflava
UASWS0038]
gi|409760553|gb|EKN45686.1| DNA polymerase III subunit epsilon [Pseudomonas viridiflava
UASWS0038]
Length = 259
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 159/239 (66%), Gaps = 13/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G + T T D
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAHDKTDITQHCTVLD 128
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 129 TLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLAG 188
Query: 181 KINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N ++I ++P + P ++ A+ +EL +H + +S I K S +W
Sbjct: 189 NASDGNGSDGGSSNRGSEIRRLPADRTPCRIIHASESELAEHEVRMSTIAKASGAPALW 247
>gi|411009925|ref|ZP_11386254.1| DNA polymerase III subunit epsilon [Aeromonas aquariorum AAK1]
gi|423196036|ref|ZP_17182619.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila SSU]
gi|404632837|gb|EKB29439.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila SSU]
Length = 244
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 115/240 (47%), Positives = 156/240 (65%), Gaps = 11/240 (4%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
++R I+LD ETTG+N G HRIIEIGCVE+ NR++TGN+ H YI P R + A+
Sbjct: 6 LNRQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHFHVYIKPDRLVDPEAI 65
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI 115
+HG+T +FL++K FS+I D F+ ++ +E+I HNA FDV F+D E S LG + T I
Sbjct: 66 QVHGITDEFLRDKPSFSQIADEFIEFIRGAELIAHNAPFDVSFMDYEFSKLGLNFKTADI 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
ITDTL MAR + GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 126 CGITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTK 185
Query: 176 LNFKPKIN-NSNNIETKIKI--PNNIPIKLANSNELVQ--HNMILSKIDKHSNGRCIWKK 230
LN + N N +N +T I+ N P+K+ ++ V+ H L + K G C+W++
Sbjct: 186 LNLATESNENESNQDTSIRRLESNRPPLKVIRASAEVEAVHEARLDLVQK-KGGACLWRQ 244
>gi|406677781|ref|ZP_11084961.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC35]
gi|404623588|gb|EKB20438.1| DNA polymerase III, epsilon subunit [Aeromonas veronii AMC35]
Length = 244
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 117/240 (48%), Positives = 158/240 (65%), Gaps = 11/240 (4%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
++R I+LD ETTG+N G HRIIEIGCVE+ NR++TGN+ H YI P R + A+
Sbjct: 6 LNRQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHYHVYIKPDRLVDPEAI 65
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI 115
+HG+T +FL++K FS+I D FL ++ +E+I HNA FDV F+D E S LG + T I
Sbjct: 66 QVHGITDEFLRDKPSFSQIADEFLEFIRGAELIAHNAPFDVSFMDYEFSKLGLNFKTADI 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
ITDTL MAR + GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 126 CTITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTK 185
Query: 176 LNFKPKIN-NSNNIETKI-KIPNNIP-IKLANSNELVQ--HNMILSKIDKHSNGRCIWKK 230
LN + N N +N +T I ++ +N P +K+ ++ VQ H L + K G C+W++
Sbjct: 186 LNLATESNENESNQDTSIRRLESNRPALKVVRASTEVQVLHEARLDLVQK-KGGSCLWRQ 244
>gi|383935797|ref|ZP_09989230.1| DNA polymerase III subunit epsilon [Rheinheimera nanhaiensis
E407-8]
gi|383703116|dbj|GAB59321.1| DNA polymerase III subunit epsilon [Rheinheimera nanhaiensis
E407-8]
Length = 233
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/231 (48%), Positives = 157/231 (67%), Gaps = 6/231 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG+N DGHRIIEIGCVE+ NR+ TGNN H YINP R + A+A+HG+T
Sbjct: 4 RQIILDTETTGINPKDGHRIIEIGCVELINRRFTGNNFHVYINPQRIIDAEAVAVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+ LK++ F+++ F +Y+ +E++IHNAAFDVGF++ E S+L +Y I D
Sbjct: 64 ERLKDEPVFAQVAKAFFDYIQGAELVIHNAAFDVGFINHEFSMLRPALPPVEQYCT-ILD 122
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLL+AR++H G++N+LDALC RY+I+ HRTLHG LLDAE+LA+VYL MT GQ +LN
Sbjct: 123 TLLLAREMHPGQKNNLDALCRRYDINNSHRTLHGALLDAEILADVYLMMTGGQVSLNLAN 182
Query: 181 KINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
+ +N++N + I + +K+ A+ EL H L + K G C+W+
Sbjct: 183 EQDNASNNSGPVAIQRSGRLKVIRASEAELAAHESRLDLVQK-KGGSCLWR 232
>gi|406974808|gb|EKD97777.1| hypothetical protein ACD_23C00748G0001, partial [uncultured
bacterium]
Length = 193
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 103/176 (58%), Positives = 132/176 (75%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGL+ G RIIEIGCVE+ R++TGNN H+Y+NP RDS + AL +HG+
Sbjct: 1 MSRQIVLDTETTGLSAEGGDRIIEIGCVELVARKLTGNNKHFYLNPERDSHEDALRVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FLK+K KF+ + D L+Y+ +EIIIHNAAFDV FL+ EL L+G F ++ ITD
Sbjct: 61 SNEFLKDKPKFAAVADELLDYLQGAEIIIHNAAFDVSFLNKELELVGRPAFRSFVDSITD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
TL MA++++ GKRNSLDALCDR + RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLAMAKELYPGKRNSLDALCDRLGVDNSSRTLHGALLDAELLADVYINLTRGQDAL 176
>gi|378578456|ref|ZP_09827131.1| DNA polymerase III epsilon subunit [Pantoea stewartii subsp.
stewartii DC283]
gi|377818736|gb|EHU01817.1| DNA polymerase III epsilon subunit [Pantoea stewartii subsp.
stewartii DC283]
Length = 243
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 153/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVVNRRLTGNNFHMYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K FSEI D FL+Y+ +E++IHNA+FD+GF+D E S L T+ +
Sbjct: 67 GIADEFLLDKPTFSEIADEFLDYIRGAELVIHNASFDIGFMDYEFSKLERGIEKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MAR++ GKRNSLDALC RY I RTLHG LLDAE+LAEV+L MT GQ++L+
Sbjct: 127 ITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVFLTMTGGQTSLS 186
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + S I+ ++ + + + A+ E+ H L I K G C+W+
Sbjct: 187 FSSEEDRSRQQQSEGIQRIVRPTSGLRVVTASDEEISHHESRLDLIMK-KGGSCLWR 242
>gi|333914441|ref|YP_004488173.1| DNA polymerase III subunit epsilon [Delftia sp. Cs1-4]
gi|333744641|gb|AEF89818.1| DNA polymerase III, epsilon subunit [Delftia sp. Cs1-4]
Length = 238
Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 107/232 (46%), Positives = 153/232 (65%), Gaps = 3/232 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R I+LD ETTGL+ +G R+IE+GCVE+ NR++TGNNLH Y N GRDS AL +HG+
Sbjct: 1 MSRQIILDTETTGLSADNGDRLIELGCVEMVNRKLTGNNLHLYFNAGRDSHPDALRVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
TT+FLK+K +F V+ Y+ +E+IIHNA FD+GFL+ EL L + + + D
Sbjct: 61 TTEFLKDKPRFEHKVEEIWEYLQGAELIIHNAPFDLGFLNKELELANRPPIRQCVSGVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-- 178
TL+MA+++ GKRNSLD+LCDR + RTLHG LLDAELLA+VY+ +TRGQ L
Sbjct: 121 TLVMAKEMFPGKRNSLDSLCDRLEVDNSGRTLHGALLDAELLADVYINLTRGQEALLMAE 180
Query: 179 KPKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+P + + ++ + + + + AN EL H ++ ++DK S G+ IW+
Sbjct: 181 EPVQSEGGLVVAQVDLASFKLRVVHANDQELAAHEDVMMQMDKSSGGKTIWR 232
>gi|256823144|ref|YP_003147107.1| DNA polymerase III subunit epsilon [Kangiella koreensis DSM 16069]
gi|256796683|gb|ACV27339.1| DNA polymerase III, epsilon subunit [Kangiella koreensis DSM 16069]
Length = 233
Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 153/234 (65%), Gaps = 11/234 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL DGHRIIEIGCVE+ NR+ TGN+ H Y+ P R+ ++ A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEPYDGHRIIEIGCVELVNRKFTGNHYHQYLQPDREIDQGAMEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RITDT 121
+FL++K +F ++VD FL ++ +E++IHNA FDVGFLD ELS+L S Y + DT
Sbjct: 62 EFLEDKPRFVDVVDEFLEFIEGAELVIHNAPFDVGFLDHELSMLDSSKGKLSDYCTVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-KP 180
L++AR++H G+RNSLDALC RY I HR LHG LLD+E+LA+VYL MT GQ++L +
Sbjct: 122 LVLARQMHPGQRNSLDALCKRYEIDNSHRELHGALLDSEILADVYLRMTGGQTSLTLGRQ 181
Query: 181 KINNSNNIETKIK--IPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
N ET ++ N P+K+ A E +H LS ++ IW +
Sbjct: 182 NAANQQTTETTVRRISANRQPLKVIKATEQESKEHQQKLSSLND-----AIWNQ 230
>gi|406596504|ref|YP_006747634.1| DNA polymerase III subunit epsilon [Alteromonas macleodii ATCC
27126]
gi|406373825|gb|AFS37080.1| DNA polymerase III subunit epsilon [Alteromonas macleodii ATCC
27126]
Length = 239
Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 154/232 (66%), Gaps = 6/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHRIIEIGCVE+ NR++TGN+ H YINPGR E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINPGRHIEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSN--FTKYIYRITD 120
+FL +K FS++ F++++ ++++IHNA FDVGF+D E + + T I + D
Sbjct: 62 EFLADKPTFSQVAQEFVSFIKGAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQICDVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-- 178
TL +AR++H G++N+LDALC RY I HRTLHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 122 TLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKLKLAS 181
Query: 179 -KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+S I + N + + A ++E+ QH L ++K + G+C+W+
Sbjct: 182 SSGSDADSTAIRRVKRSANKLKVIKATADEITQHEARLDIVEK-AGGKCLWR 232
>gi|88857806|ref|ZP_01132448.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Pseudoalteromonas tunicata D2]
gi|88819423|gb|EAR29236.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Pseudoalteromonas tunicata D2]
Length = 252
Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 113/237 (47%), Positives = 156/237 (65%), Gaps = 14/237 (5%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
HR IVLD ETTG++ GHRIIEIGCVE+ NR+ TGNN H YINP RD E A+ +HG+T
Sbjct: 18 HRQIVLDTETTGIDPKLGHRIIEIGCVELINRRFTGNNFHVYINPERDIEDEAIDVHGIT 77
Query: 62 TKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRIT 119
+FL++K KF I F +Y+ +E++IHNAAFDVGF+D E L GY ++ ++
Sbjct: 78 NQFLRDKPKFHHIAQEFFDYIQGAELVIHNAAFDVGFMDSEFQRLRTGYPKTAQFC-QVL 136
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MAR++H G++N+LDALC RYNI RT+HG LLD+E+L++VYLAMT GQ +LN
Sbjct: 137 DTLKMARELHPGQKNNLDALCRRYNIDNGKRTMHGALLDSEILSDVYLAMTGGQVSLNLN 196
Query: 180 PKINNSNNIETKIKI--------PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ N + + +I P NI A+ N+ H L+ ++K S+ +C+W
Sbjct: 197 TQTVGEENAQKQGEIIRLNSDRAPLNIVYATADENQA--HIERLALVEKKSS-QCLW 250
>gi|407683464|ref|YP_006798638.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'English Channel 673']
gi|407245075|gb|AFT74261.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'English Channel 673']
Length = 239
Score = 219 bits (559), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 155/232 (66%), Gaps = 6/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHRIIEIGCVE+ NR++TGN+ H YINPGR E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINPGRHIEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSN--FTKYIYRITD 120
+FL +K FS++ F++++ ++++IHNA FDVGF+D E + + T I + D
Sbjct: 62 EFLADKPTFSQVAQEFVSFIKGAQLVIHNAPFDVGFMDHEFGMEASTKGVITNQICDVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +AR++H G++N+LDALC RY I HRTLHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 122 TLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKLKLAS 181
Query: 181 KINNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + +I N + + A+++E+ QH L ++K + G+C+W+
Sbjct: 182 SSGSDADSTAIRRINRSANKLKVIKASADEITQHEARLDIVEK-AGGKCLWR 232
>gi|410693577|ref|YP_003624198.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As]
gi|294340001|emb|CAZ88365.1| DNA polymerase III subunit epsilon [Thiomonas sp. 3As]
Length = 239
Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 150/236 (63%), Gaps = 11/236 (4%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTGLN G RIIE+ VE+ NR++TG + H Y+NP R S AL +HGL
Sbjct: 1 MTRQIVLDTETTGLNPASGDRIIEVAGVELFNRRLTGKHYHAYLNPDRASHPDALKVHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
T +FL +K +F++I D+ L +V ++EIIIHNA FD FLD EL L F +++ +TD
Sbjct: 61 TEEFLSDKPRFAQIADDLLEFVRDAEIIIHNAPFDCAFLDAELERLNRPAFKQHVPLVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MA+ GK N+LDALC R+ I HRTLHG LLDAELLAEVYL++TRGQ +L
Sbjct: 121 TLAMAKLQFPGKFNNLDALCKRFGIDNAHRTLHGALLDAELLAEVYLSLTRGQESL---- 176
Query: 181 KINNSNNIETKIKIPN------NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + ++ + + ++ ++ +S+E H L +DK S G+ IW+
Sbjct: 177 -VIDLETPQQQMSVASHRLDHFSLLVRAPSSDEQAAHEAFLQLLDKKSQGKSIWRP 231
>gi|430761985|ref|YP_007217842.1| DNA polymerase III epsilon subunit [Thioalkalivibrio
nitratireducens DSM 14787]
gi|430011609|gb|AGA34361.1| DNA polymerase III epsilon subunit [Thioalkalivibrio
nitratireducens DSM 14787]
Length = 236
Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 147/232 (63%), Gaps = 4/232 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ GHRIIEIGC+E+ NR++TG LH Y+ P R+ + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLDPASGHRIIEIGCLEVVNRRVTGERLHEYLQPDREIDPGAVEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDT 121
+FL++K +F ++VD FL +V +E++IHNA FD+GF++ EL L G + I + DT
Sbjct: 62 EFLRDKPRFGDVVDRFLEFVDGAELVIHNAPFDLGFINHELKLAGAGVPRIEQICTVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK-- 179
L++AR++H G RNSLDALC RY + R LHG +LDAELLAEVYLAMT GQ L
Sbjct: 122 LVLARQMHPGTRNSLDALCRRYQVDASGRVLHGAVLDAELLAEVYLAMTGGQVALGLDQA 181
Query: 180 -PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
P ++ + + +P+ EL H +++ ++K S W++
Sbjct: 182 GPDTAAASTPQRARRSQARLPVIEPGPEELAAHAELVALLEKSSGEASTWRQ 233
>gi|398861056|ref|ZP_10616694.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM79]
gi|398233858|gb|EJN19766.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM79]
Length = 252
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 162/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G+ ++ T++ I
Sbjct: 64 EFLVGKPRFTEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGHHDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + PI++ A+ +L QH L I K + +W
Sbjct: 183 GNASDGNGSGEGADNSATEIRRLPADRQPIRIIRASEEDLAQHVARLEAIAKSAGAPSLW 242
Query: 229 KK 230
++
Sbjct: 243 QQ 244
>gi|358637445|dbj|BAL24742.1| DNA polymerase III, epsilon subunit [Azoarcus sp. KH32C]
Length = 243
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 153/231 (66%), Gaps = 6/231 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ +G R+IEIGCVE+ NR +TG + H YINP R + A+A+HG+T
Sbjct: 2 RQIVLDTETTGLDWRNGDRVIEIGCVELLNRNLTGRHYHVYINPERGIDAEAIAVHGITE 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF +IV+ F+++V +SE++IHNA+FDVGFL+ ELSLL + DTL
Sbjct: 62 EFLADKPKFRDIVEEFIDFVRDSELVIHNASFDVGFLNHELSLLAKERLDTLCGGVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS----NLNF 178
MA++ + GK+ SLDALCDRY I RTLHG LLDAELLA+VYLAMTRGQ +L+
Sbjct: 122 KMAKEQNPGKKASLDALCDRYQIDNASRTLHGALLDAELLADVYLAMTRGQESLIMSLDD 181
Query: 179 KP-KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+P + + + P I ++ + EL +H +L I K + G C+W
Sbjct: 182 EPAGMGGLGDGGALVDRPPLIVLR-PSDEELAEHERVLQDIAKATKGLCLW 231
>gi|357406359|ref|YP_004918283.1| DNA polymerase III subunit epsilon [Methylomicrobium alcaliphilum
20Z]
gi|351719024|emb|CCE24698.1| DNA polymerase III subunit epsilon [Methylomicrobium alcaliphilum
20Z]
Length = 239
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 109/233 (46%), Positives = 155/233 (66%), Gaps = 7/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN +GHR+IEIGCVE+ NR+++G + H YINP R+ + A+ +HG+T
Sbjct: 7 RQIVLDTETTGLNPQEGHRVIEIGCVELLNRRLSGRHFHVYINPEREIDAGAVEVHGITN 66
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYRITDT 121
+FL +K FS IVD+F+N++ ++E++IHNA FDVGFL+ E LL + + + DT
Sbjct: 67 EFLADKPVFSSIVDDFINFIRDAELVIHNAPFDVGFLNHEFGLLNNGAGVVESYSSVFDT 126
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK-- 179
L ARK H G+RNSLDALC RY I HR LHG LLDAE+LA+VYL MT GQ++L +
Sbjct: 127 LTFARKKHPGQRNSLDALCKRYGIDNSHRDLHGALLDAEILADVYLLMTGGQASLLDEEI 186
Query: 180 PKINNSNNIETKIKIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
P +++P++ P + ++ E+ +H L+ I+K + G C+WK
Sbjct: 187 PSDEEGGGESVIVRLPSDRPRLKVIQCDAEEVAEHQRRLAAIEK-AGGVCLWK 238
>gi|398798328|ref|ZP_10557629.1| DNA polymerase III, epsilon subunit [Pantoea sp. GM01]
gi|398101045|gb|EJL91273.1| DNA polymerase III, epsilon subunit [Pantoea sp. GM01]
Length = 243
Score = 219 bits (558), Expect = 7e-55, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 154/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F++I D FL Y+ +E++IHNA+FD+GF+D E +L T+ +
Sbjct: 67 GIADEFLADKPLFADIADEFLEYIRGAELVIHNASFDIGFMDYEFGMLKRDIGKTETFCQ 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MARK++ GKRNSLDALC+RY I RTLHG LLDAE+LAEV+L MT GQ++L
Sbjct: 127 ITDSLAMARKMYPGKRNSLDALCNRYEIDNSKRTLHGALLDAEILAEVFLMMTGGQTSLA 186
Query: 178 FKPKINNSN-----NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F +N NI+ ++ + + I A+ EL+ H L + K G C+W+
Sbjct: 187 FSLDGEQNNQGGGENIQRIVRPSSGLRIVTASDEELIAHEGRLDLVQK-KGGSCLWR 242
>gi|407687449|ref|YP_006802622.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Balearic Sea AD45']
gi|407290829|gb|AFT95141.1| DNA polymerase III subunit epsilon [Alteromonas macleodii str.
'Balearic Sea AD45']
Length = 239
Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 155/232 (66%), Gaps = 6/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHRIIEIGCVE+ NR++TGN+ H YINPGR E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPKEGHRIIEIGCVEVVNRRLTGNHFHVYINPGRHIEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSN--FTKYIYRITD 120
+FL +K FS++ F++++ ++++IHNA FDVGF+D E + + T I + D
Sbjct: 62 EFLADKPTFSQVAQEFVSFIKGAQLVIHNAPFDVGFMDHEFGIEASTKGVITNQICDVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +AR++H G++N+LDALC RY I HRTLHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 122 TLTLARQMHPGQKNNLDALCKRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTKLKLAS 181
Query: 181 KINNSNNIETKIKI---PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + +I N + + A+++E+ QH L ++K + G+C+W+
Sbjct: 182 SSGSDADSTAIRRINRGANKLKVIKASADEITQHEARLDIVEK-AGGKCLWR 232
>gi|422783019|ref|ZP_16835804.1| DNA polymerase III [Escherichia coli TW10509]
gi|323975918|gb|EGB71013.1| DNA polymerase III [Escherichia coli TW10509]
Length = 243
Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F+NY+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMNYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 242
>gi|344343525|ref|ZP_08774393.1| DNA polymerase III, epsilon subunit [Marichromatium purpuratum 984]
gi|343804948|gb|EGV22846.1| DNA polymerase III, epsilon subunit [Marichromatium purpuratum 984]
Length = 243
Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 147/234 (62%), Gaps = 8/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ DGHRIIEIGCVE+ +R++T NN H Y+ P R+ + A+ +HG+T
Sbjct: 5 RQIVLDTETTGLDPQDGHRIIEIGCVELIDRRLTRNNFHRYLQPDREIDAGAVEVHGITN 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYRITDT 121
FL +K +F E+ + FL+YV +E+IIHNAAFDVGFLD EL L + + + +TDT
Sbjct: 65 DFLADKPRFGELAEAFLDYVRGAELIIHNAAFDVGFLDHELRLWQPEAPRIEALCSVTDT 124
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L+MAR++H G+RNSLDALC RY++ R LHG LLDAE+LA+VYLAMT GQ L
Sbjct: 125 LMMARRLHPGQRNSLDALCKRYDVDNSQRDLHGALLDAEILADVYLAMTGGQVKLGLGEV 184
Query: 182 INNSNNIETKIKIPNNI-----PIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
+ I P+++ A+ L H L IDK S C+W
Sbjct: 185 ETVGEGAQGATGEHGRISAERPPLRVVRADGRALGAHAARLEAIDKASAEGCLW 238
>gi|393764497|ref|ZP_10353107.1| DNA polymerase III subunit epsilon [Alishewanella agri BL06]
gi|392604626|gb|EIW87527.1| DNA polymerase III subunit epsilon [Alishewanella agri BL06]
Length = 234
Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 108/232 (46%), Positives = 152/232 (65%), Gaps = 7/232 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG+N +GHRIIEIGCVE+ NR+ TGNN H YINP R+ E A+A+HG+T
Sbjct: 4 RQIILDTETTGINPKEGHRIIEIGCVELINRRFTGNNFHVYINPEREIEAEAIAVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+ L + KF +I F NY+ +E++IHNAAFDVGF++ E +LL +Y + D
Sbjct: 64 ERLAAEPKFRDIAQAFFNYIQGAELVIHNAAFDVGFINHEFALLKPALPPVAQYCT-VLD 122
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL++AR++H G++N+LDALC RY+I+ HRTLHG LLDAE+LA+VYL MT GQ +LN
Sbjct: 123 TLMLARELHPGQKNNLDALCKRYDINNSHRTLHGALLDAEILADVYLLMTGGQVSLNLAA 182
Query: 181 KINNSNNIE---TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + ++ ++ + + AN EL H L + K G C+W+
Sbjct: 183 EEESQQQMQDNLQPVQRSGRLKVIRANQAELSAHESRLDLVQK-KGGTCLWR 233
>gi|422803706|ref|ZP_16852189.1| DNA polymerase III [Escherichia coli M863]
gi|323963754|gb|EGB59256.1| DNA polymerase III [Escherichia coli M863]
Length = 246
Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F+NY+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMNYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|432615012|ref|ZP_19851149.1| DNA polymerase III subunit epsilon [Escherichia coli KTE75]
gi|432858607|ref|ZP_20085010.1| DNA polymerase III subunit epsilon [Escherichia coli KTE146]
gi|432872806|ref|ZP_20092569.1| DNA polymerase III subunit epsilon [Escherichia coli KTE147]
gi|431158721|gb|ELE59319.1| DNA polymerase III subunit epsilon [Escherichia coli KTE75]
gi|431405474|gb|ELG88713.1| DNA polymerase III subunit epsilon [Escherichia coli KTE147]
gi|431408363|gb|ELG91549.1| DNA polymerase III subunit epsilon [Escherichia coli KTE146]
Length = 246
Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQDETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|416895566|ref|ZP_11925459.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_7v]
gi|417112387|ref|ZP_11964510.1| DNA polymerase III, epsilon subunit [Escherichia coli 1.2741]
gi|327254934|gb|EGE66544.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_7v]
gi|386143171|gb|EIG84307.1| DNA polymerase III, epsilon subunit [Escherichia coli 1.2741]
Length = 243
Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F+NY+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMNYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 242
>gi|451811717|ref|YP_007448172.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium crithidii TCC036E]
gi|451776875|gb|AGF47874.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium crithidii TCC036E]
Length = 240
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 151/231 (65%), Gaps = 9/231 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++ DIETTGL++ DGHR+IEIGCVEI NR IT LH YINP R+ + AL++HGLT+
Sbjct: 2 RQVIFDIETTGLDVSDGHRVIEIGCVEINNRIITDRYLHLYINPHREIDVGALSVHGLTS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F++++ FL++++++EII HNA FDV F++ EL L N +KY +ITD+L
Sbjct: 62 EFLSDKPDFADVITQFLDFINDAEIIAHNAQFDVKFINSELDKLNLGNLSKYCRKITDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ARKI GKRNSLDALCD Y IS + R +HG LLD+ LL++V+LAMTRGQ+
Sbjct: 122 SLARKIRPGKRNSLDALCDHYGISNLDRKMHGALLDSRLLSQVWLAMTRGQNEFLIDDYE 181
Query: 183 NNSNNIE-----TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
N + + KI +P IP E+ H L + K S+ +W
Sbjct: 182 RNKKSFQITDNHAKISLPVIIP----KEEEINSHQEYLRNMKKESSNSVLW 228
>gi|301050549|ref|ZP_07197422.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1]
gi|300297757|gb|EFJ54142.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 185-1]
Length = 246
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|331661586|ref|ZP_08362509.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143]
gi|387605685|ref|YP_006094541.1| DNA polymerase III subunit epsilon [Escherichia coli 042]
gi|432769019|ref|ZP_20003397.1| DNA polymerase III subunit epsilon [Escherichia coli KTE50]
gi|432959320|ref|ZP_20149891.1| DNA polymerase III subunit epsilon [Escherichia coli KTE202]
gi|433061418|ref|ZP_20248391.1| DNA polymerase III subunit epsilon [Escherichia coli KTE125]
gi|284919985|emb|CBG33040.1| DNA polymerase III epsilon subunit [Escherichia coli 042]
gi|331060008|gb|EGI31972.1| DNA polymerase III, epsilon subunit [Escherichia coli TA143]
gi|431319895|gb|ELG07548.1| DNA polymerase III subunit epsilon [Escherichia coli KTE50]
gi|431480894|gb|ELH60609.1| DNA polymerase III subunit epsilon [Escherichia coli KTE202]
gi|431589121|gb|ELI60338.1| DNA polymerase III subunit epsilon [Escherichia coli KTE125]
Length = 246
Score = 219 bits (557), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPERLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F+NY+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMNYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|124267443|ref|YP_001021447.1| DNA polymerase III subunit epsilon [Methylibium petroleiphilum PM1]
gi|124260218|gb|ABM95212.1| DNA polymerase III, epsilon subunit [Methylibium petroleiphilum
PM1]
Length = 234
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 108/231 (46%), Positives = 151/231 (65%), Gaps = 2/231 (0%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R I LD ETTGL+ +G RIIEIGCVE+ +R+++GNN H+Y+NP R + + A+ IHGL
Sbjct: 1 MSRQIFLDTETTGLSPENGDRIIEIGCVEMLSRRLSGNNRHFYLNPERRNHEDAVKIHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
T +FL +K KF+ + D + Y++ +EIIIHNAAFDVGFLD EL L F + + +TD
Sbjct: 61 TDEFLADKPKFAVVADELMEYLAGAEIIIHNAAFDVGFLDAELKRLQRPRFAEQVGAVTD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK- 179
+L MAR++ GK NSLDALC R + RTLHG LLDA LLAEVY+ MTRGQ++L
Sbjct: 121 SLTMAREMFPGKSNSLDALCKRLEVDNASRTLHGALLDAGLLAEVYIRMTRGQNSLVIDA 180
Query: 180 PKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ I + +P+ + +E H +L+++DK S G+ +W+
Sbjct: 181 GAASGGAIAVADIDLRQFALPVIEPSDDERQAHEAVLAELDKVSGGKTLWR 231
>gi|110804261|ref|YP_687782.1| DNA polymerase III subunit epsilon [Shigella flexneri 5 str. 8401]
gi|424836730|ref|ZP_18261367.1| DNA polymerase III subunit epsilon [Shigella flexneri 5a str. M90T]
gi|110613809|gb|ABF02476.1| DNA polymerase III, epsilon subunit [Shigella flexneri 5 str. 8401]
gi|383465782|gb|EID60803.1| DNA polymerase III subunit epsilon [Shigella flexneri 5a str. M90T]
Length = 246
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L++ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLVVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|443473084|ref|ZP_21063109.1| DNA polymerase III epsilon subunit [Pseudomonas pseudoalcaligenes
KF707]
gi|442903647|gb|ELS28938.1| DNA polymerase III epsilon subunit [Pseudomonas pseudoalcaligenes
KF707]
Length = 245
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 105/240 (43%), Positives = 152/240 (63%), Gaps = 19/240 (7%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R++VLD ETTG+ + DGHR+IEIGCVE+ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RYVVLDTETTGMPVTDGHRVIEIGCVELVGRRLTGRHFHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL K +F ++ D F ++ +E+IIHNAAFD+GF++ E +LLG S+ + T D
Sbjct: 62 EFLVGKPRFKDVADEFFEFIKGAELIIHNAAFDIGFINNEFALLGQSDRSDVTEHCTVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLLMAR+ H G+RNSLDALC RY++ +R LHG LLDAE+LA+VYLAMT GQ+NL+
Sbjct: 122 TLLMARERHPGQRNSLDALCKRYDVDNSNRELHGALLDAEILADVYLAMTGGQTNLSLAG 181
Query: 181 KINNSNNIETKIKIPNNIPIK------------LANSNELVQHNMILSKIDKHSNGRCIW 228
+ + P PI+ A+ EL H L+ I+K + +W
Sbjct: 182 EGGDGAGGR-----PQATPIRRLAADRPRGRVIRASEEELAAHASRLAAIEKSAGAPALW 236
>gi|193063208|ref|ZP_03044299.1| DNA polymerase III, epsilon subunit [Escherichia coli E22]
gi|300819828|ref|ZP_07100014.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1]
gi|300823399|ref|ZP_07103529.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7]
gi|300926565|ref|ZP_07142351.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1]
gi|301326098|ref|ZP_07219494.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1]
gi|307314695|ref|ZP_07594293.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
gi|309797929|ref|ZP_07692309.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7]
gi|331666456|ref|ZP_08367336.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271]
gi|331675873|ref|ZP_08376590.1| DNA polymerase III, epsilon subunit [Escherichia coli H591]
gi|378714452|ref|YP_005279345.1| DNA polymerase III subunit epsilon [Escherichia coli KO11FL]
gi|386607511|ref|YP_006122997.1| DNA polymerase III subunit epsilon [Escherichia coli W]
gi|386707938|ref|YP_006171659.1| DNA polymerase III subunit epsilon [Escherichia coli W]
gi|415876761|ref|ZP_11543119.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 79-10]
gi|416274001|ref|ZP_11643491.1| DNA polymerase III epsilon subunit [Shigella dysenteriae CDC
74-1112]
gi|416284715|ref|ZP_11647376.1| DNA polymerase III epsilon subunit [Shigella boydii ATCC 9905]
gi|417152746|ref|ZP_11991537.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0497]
gi|417216585|ref|ZP_12023257.1| DNA polymerase III, epsilon subunit [Escherichia coli JB1-95]
gi|417230160|ref|ZP_12031746.1| DNA polymerase III, epsilon subunit [Escherichia coli 5.0959]
gi|417252890|ref|ZP_12044649.1| DNA polymerase III, epsilon subunit [Escherichia coli 4.0967]
gi|417268195|ref|ZP_12055556.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.3884]
gi|419947841|ref|ZP_14464154.1| DNA polymerase III subunit epsilon [Escherichia coli CUMT8]
gi|422351268|ref|ZP_16432092.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 117-3]
gi|422776854|ref|ZP_16830507.1| DNA polymerase III [Escherichia coli H120]
gi|422957447|ref|ZP_16969661.1| DNA polymerase III subunit epsilon [Escherichia coli H494]
gi|422990914|ref|ZP_16981685.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
C227-11]
gi|422992854|ref|ZP_16983618.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
C236-11]
gi|422998063|ref|ZP_16988819.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
09-7901]
gi|423006548|ref|ZP_16997291.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
04-8351]
gi|423008169|ref|ZP_16998907.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-3677]
gi|423022355|ref|ZP_17013058.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4404]
gi|423027510|ref|ZP_17018203.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4522]
gi|423033347|ref|ZP_17024031.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4623]
gi|423036213|ref|ZP_17026887.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423041333|ref|ZP_17032000.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423048019|ref|ZP_17038676.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423051603|ref|ZP_17040411.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423058568|ref|ZP_17047364.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423709943|ref|ZP_17684293.1| DNA polymerase III subunit epsilon [Escherichia coli B799]
gi|429722413|ref|ZP_19257311.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429774492|ref|ZP_19306495.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02030]
gi|429779754|ref|ZP_19311708.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02033-1]
gi|429783807|ref|ZP_19315720.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02092]
gi|429789145|ref|ZP_19321020.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02093]
gi|429795375|ref|ZP_19327201.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02281]
gi|429801301|ref|ZP_19333079.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02318]
gi|429804933|ref|ZP_19336680.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02913]
gi|429809744|ref|ZP_19341446.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-03439]
gi|429815504|ref|ZP_19347163.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-04080]
gi|429821092|ref|ZP_19352705.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-03943]
gi|429906765|ref|ZP_19372734.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429910961|ref|ZP_19376917.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-9941]
gi|429916800|ref|ZP_19382740.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429921838|ref|ZP_19387759.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429927656|ref|ZP_19393562.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429931588|ref|ZP_19397483.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429938130|ref|ZP_19404011.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429938844|ref|ZP_19404718.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429946487|ref|ZP_19412342.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429949135|ref|ZP_19414983.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429957402|ref|ZP_19423231.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec12-0466]
gi|432375301|ref|ZP_19618317.1| DNA polymerase III subunit epsilon [Escherichia coli KTE12]
gi|432677807|ref|ZP_19913237.1| DNA polymerase III subunit epsilon [Escherichia coli KTE142]
gi|432748592|ref|ZP_19983220.1| DNA polymerase III subunit epsilon [Escherichia coli KTE29]
gi|432763495|ref|ZP_19997951.1| DNA polymerase III subunit epsilon [Escherichia coli KTE48]
gi|432804263|ref|ZP_20038209.1| DNA polymerase III subunit epsilon [Escherichia coli KTE91]
gi|432812363|ref|ZP_20046212.1| DNA polymerase III subunit epsilon [Escherichia coli KTE101]
gi|432830187|ref|ZP_20063796.1| DNA polymerase III subunit epsilon [Escherichia coli KTE135]
gi|432833313|ref|ZP_20066861.1| DNA polymerase III subunit epsilon [Escherichia coli KTE136]
gi|432932519|ref|ZP_20132373.1| DNA polymerase III subunit epsilon [Escherichia coli KTE184]
gi|432966351|ref|ZP_20155271.1| DNA polymerase III subunit epsilon [Escherichia coli KTE203]
gi|433090561|ref|ZP_20276871.1| DNA polymerase III subunit epsilon [Escherichia coli KTE138]
gi|433192001|ref|ZP_20376032.1| DNA polymerase III subunit epsilon [Escherichia coli KTE90]
gi|192931116|gb|EDV83719.1| DNA polymerase III, epsilon subunit [Escherichia coli E22]
gi|300417423|gb|EFK00734.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 182-1]
gi|300524017|gb|EFK45086.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 119-7]
gi|300527586|gb|EFK48648.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 107-1]
gi|300847158|gb|EFK74918.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 78-1]
gi|306905814|gb|EFN36339.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
gi|308118469|gb|EFO55731.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 145-7]
gi|315059428|gb|ADT73755.1| DNA polymerase III, epsilon subunit [Escherichia coli W]
gi|320173695|gb|EFW48884.1| DNA polymerase III epsilon subunit [Shigella dysenteriae CDC
74-1112]
gi|320179852|gb|EFW54798.1| DNA polymerase III epsilon subunit [Shigella boydii ATCC 9905]
gi|323380013|gb|ADX52281.1| DNA polymerase III, epsilon subunit [Escherichia coli KO11FL]
gi|323945583|gb|EGB41633.1| DNA polymerase III [Escherichia coli H120]
gi|324020673|gb|EGB89892.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 117-3]
gi|331066301|gb|EGI38179.1| DNA polymerase III, epsilon subunit [Escherichia coli TA271]
gi|331076433|gb|EGI47710.1| DNA polymerase III, epsilon subunit [Escherichia coli H591]
gi|342928408|gb|EGU97130.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 79-10]
gi|354858047|gb|EHF18498.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
04-8351]
gi|354859900|gb|EHF20347.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
C227-11]
gi|354866597|gb|EHF27020.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
C236-11]
gi|354876931|gb|EHF37291.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
09-7901]
gi|354880939|gb|EHF41273.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4404]
gi|354883827|gb|EHF44141.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-3677]
gi|354885628|gb|EHF45920.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4522]
gi|354888695|gb|EHF48949.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4623]
gi|354901296|gb|EHF61423.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354905527|gb|EHF65610.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354908034|gb|EHF68090.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354918506|gb|EHF78462.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354922194|gb|EHF82109.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-4632 C4]
gi|371598253|gb|EHN87063.1| DNA polymerase III subunit epsilon [Escherichia coli H494]
gi|383403630|gb|AFH09873.1| DNA polymerase III subunit epsilon [Escherichia coli W]
gi|385705002|gb|EIG42071.1| DNA polymerase III subunit epsilon [Escherichia coli B799]
gi|386169470|gb|EIH35978.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0497]
gi|386193447|gb|EIH87731.1| DNA polymerase III, epsilon subunit [Escherichia coli JB1-95]
gi|386206650|gb|EII11156.1| DNA polymerase III, epsilon subunit [Escherichia coli 5.0959]
gi|386216821|gb|EII33310.1| DNA polymerase III, epsilon subunit [Escherichia coli 4.0967]
gi|386230553|gb|EII57908.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.3884]
gi|388422426|gb|EIL82006.1| DNA polymerase III subunit epsilon [Escherichia coli CUMT8]
gi|429351308|gb|EKY88028.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02030]
gi|429352570|gb|EKY89283.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02033-1]
gi|429352769|gb|EKY89478.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02092]
gi|429366682|gb|EKZ03283.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02093]
gi|429367593|gb|EKZ04185.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02281]
gi|429370088|gb|EKZ06654.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02318]
gi|429382475|gb|EKZ18939.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-02913]
gi|429384708|gb|EKZ21162.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-03943]
gi|429385231|gb|EKZ21684.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-03439]
gi|429396924|gb|EKZ33271.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
11-04080]
gi|429399170|gb|EKZ35491.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-9450]
gi|429399459|gb|EKZ35779.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-9990]
gi|429410214|gb|EKZ46436.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4984]
gi|429412114|gb|EKZ48311.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4986]
gi|429419099|gb|EKZ55237.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4987]
gi|429422879|gb|EKZ58989.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-4988]
gi|429427658|gb|EKZ63738.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-5603]
gi|429435326|gb|EKZ71344.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-5604]
gi|429440889|gb|EKZ76865.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec12-0465]
gi|429444467|gb|EKZ80412.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-6006]
gi|429450771|gb|EKZ86663.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec12-0466]
gi|429456261|gb|EKZ92106.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
Ec11-9941]
gi|430901625|gb|ELC23522.1| DNA polymerase III subunit epsilon [Escherichia coli KTE12]
gi|431207989|gb|ELF06219.1| DNA polymerase III subunit epsilon [Escherichia coli KTE142]
gi|431301656|gb|ELF90858.1| DNA polymerase III subunit epsilon [Escherichia coli KTE29]
gi|431313804|gb|ELG01761.1| DNA polymerase III subunit epsilon [Escherichia coli KTE48]
gi|431357255|gb|ELG43922.1| DNA polymerase III subunit epsilon [Escherichia coli KTE101]
gi|431357596|gb|ELG44262.1| DNA polymerase III subunit epsilon [Escherichia coli KTE91]
gi|431379949|gb|ELG64849.1| DNA polymerase III subunit epsilon [Escherichia coli KTE135]
gi|431388475|gb|ELG72198.1| DNA polymerase III subunit epsilon [Escherichia coli KTE136]
gi|431456552|gb|ELH36895.1| DNA polymerase III subunit epsilon [Escherichia coli KTE184]
gi|431475712|gb|ELH55516.1| DNA polymerase III subunit epsilon [Escherichia coli KTE203]
gi|431615674|gb|ELI84797.1| DNA polymerase III subunit epsilon [Escherichia coli KTE138]
gi|431722752|gb|ELJ86715.1| DNA polymerase III subunit epsilon [Escherichia coli KTE90]
Length = 246
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L ++K G C+W+
Sbjct: 190 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVEK-KGGSCLWR 245
>gi|171057726|ref|YP_001790075.1| DNA polymerase III subunit epsilon [Leptothrix cholodnii SP-6]
gi|170775171|gb|ACB33310.1| DNA polymerase III, epsilon subunit [Leptothrix cholodnii SP-6]
Length = 241
Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 150/232 (64%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL+ G R++E+GCVE+ NR++TG NLH+Y NP R + + A+ +HGLT
Sbjct: 2 RQIFLDTETTGLSHESGDRVVELGCVEMVNRRLTGRNLHHYFNPQRANHEEAVRVHGLTD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K FS + F+++V ++EII HNA FDVGFLD EL +G+ + + ++TD+L
Sbjct: 62 AFLADKPLFSAVAQEFVDFVRDAEIIAHNANFDVGFLDAELKRIGHPPLKQLVDKVTDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-KPK 181
+MAR+ GK NSLDALC R + RT+HG LLDA LLAEVY+ MTRGQ++L
Sbjct: 122 VMAREQFPGKANSLDALCRRLEVDNTSRTVHGALLDAGLLAEVYIRMTRGQNSLVIDDSP 181
Query: 182 INNSNNIETKIKIPN----NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + +E + + +P+ +A E+ H +LS +DK S G+ +W+
Sbjct: 182 VQSEQQVEQPLIAVDLTAFVLPVLVAEDEEIAAHEAVLSGLDKSSGGKTLWR 233
>gi|170021437|ref|YP_001726391.1| DNA polymerase III subunit epsilon [Escherichia coli ATCC 8739]
gi|253774763|ref|YP_003037594.1| DNA polymerase III subunit epsilon [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|297518674|ref|ZP_06937060.1| DNA polymerase III subunit epsilon [Escherichia coli OP50]
gi|300905642|ref|ZP_07123388.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1]
gi|300919145|ref|ZP_07135678.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1]
gi|300927906|ref|ZP_07143466.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1]
gi|301305771|ref|ZP_07211857.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1]
gi|386703408|ref|YP_006167255.1| DNA polymerase III, epsilon subunit-related 3-5 exonuclease
[Escherichia coli P12b]
gi|415866175|ref|ZP_11538829.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 85-1]
gi|422784862|ref|ZP_16837601.1| DNA polymerase III [Escherichia coli H489]
gi|422791020|ref|ZP_16843723.1| DNA polymerase III [Escherichia coli TA007]
gi|432529511|ref|ZP_19766569.1| DNA polymerase III subunit epsilon [Escherichia coli KTE233]
gi|432532425|ref|ZP_19769432.1| DNA polymerase III subunit epsilon [Escherichia coli KTE234]
gi|432578924|ref|ZP_19815359.1| DNA polymerase III subunit epsilon [Escherichia coli KTE56]
gi|433128499|ref|ZP_20313985.1| DNA polymerase III subunit epsilon [Escherichia coli KTE163]
gi|433133401|ref|ZP_20318785.1| DNA polymerase III subunit epsilon [Escherichia coli KTE166]
gi|442596074|ref|ZP_21013900.1| DNA polymerase III epsilon subunit [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
gi|169756365|gb|ACA79064.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 8739]
gi|253325807|gb|ACT30409.1| DNA polymerase III, epsilon subunit [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|300402534|gb|EFJ86072.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 84-1]
gi|300413743|gb|EFJ97053.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 115-1]
gi|300464061|gb|EFK27554.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 187-1]
gi|300838946|gb|EFK66706.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 124-1]
gi|315253528|gb|EFU33496.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 85-1]
gi|323963578|gb|EGB59135.1| DNA polymerase III [Escherichia coli H489]
gi|323972507|gb|EGB67713.1| DNA polymerase III [Escherichia coli TA007]
gi|383101576|gb|AFG39085.1| DNA polymerase III, epsilon subunit-related 3-5 exonuclease
[Escherichia coli P12b]
gi|431057849|gb|ELD67267.1| DNA polymerase III subunit epsilon [Escherichia coli KTE233]
gi|431064686|gb|ELD73548.1| DNA polymerase III subunit epsilon [Escherichia coli KTE234]
gi|431109252|gb|ELE13218.1| DNA polymerase III subunit epsilon [Escherichia coli KTE56]
gi|431652128|gb|ELJ19288.1| DNA polymerase III subunit epsilon [Escherichia coli KTE163]
gi|431663522|gb|ELJ30282.1| DNA polymerase III subunit epsilon [Escherichia coli KTE166]
gi|441655577|emb|CCP99813.1| DNA polymerase III epsilon subunit [Escherichia coli O5:K4(L):H4
str. ATCC 23502]
Length = 246
Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A +EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDDELAAHEARLDLVQK-KGGSCLWR 245
>gi|26246159|ref|NP_752198.1| DNA polymerase III subunit epsilon [Escherichia coli CFT073]
gi|91209283|ref|YP_539269.1| DNA polymerase III subunit epsilon [Escherichia coli UTI89]
gi|117622497|ref|YP_851410.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1]
gi|227884794|ref|ZP_04002599.1| DNA polymerase III subunit epsilon [Escherichia coli 83972]
gi|237707792|ref|ZP_04538273.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA]
gi|300900029|ref|ZP_07118226.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1]
gi|300936085|ref|ZP_07151027.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1]
gi|300988192|ref|ZP_07178593.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1]
gi|331656205|ref|ZP_08357167.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206]
gi|331681596|ref|ZP_08382232.1| DNA polymerase III, epsilon subunit [Escherichia coli H299]
gi|386605819|ref|YP_006112119.1| DNA polymerase III subunit epsilon [Escherichia coli UM146]
gi|386627735|ref|YP_006147455.1| DNA polymerase III subunit epsilon [Escherichia coli str. 'clone D
i2']
gi|386632655|ref|YP_006152374.1| DNA polymerase III subunit epsilon [Escherichia coli str. 'clone D
i14']
gi|386637570|ref|YP_006104368.1| DNA polymerase III subunit epsilon [Escherichia coli ABU 83972]
gi|419913239|ref|ZP_14431680.1| DNA polymerase III subunit epsilon [Escherichia coli KD1]
gi|422356484|ref|ZP_16437167.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 110-3]
gi|422365162|ref|ZP_16445665.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 153-1]
gi|422368070|ref|ZP_16448489.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 16-3]
gi|422838760|ref|ZP_16886732.1| DNA polymerase III subunit epsilon [Escherichia coli H397]
gi|422979249|ref|ZP_16977817.1| DNA polymerase III subunit epsilon [Escherichia coli TA124]
gi|432351843|ref|ZP_19595156.1| DNA polymerase III subunit epsilon [Escherichia coli KTE2]
gi|432356571|ref|ZP_19599818.1| DNA polymerase III subunit epsilon [Escherichia coli KTE4]
gi|432360994|ref|ZP_19604191.1| DNA polymerase III subunit epsilon [Escherichia coli KTE5]
gi|432390105|ref|ZP_19632970.1| DNA polymerase III subunit epsilon [Escherichia coli KTE21]
gi|432400290|ref|ZP_19643051.1| DNA polymerase III subunit epsilon [Escherichia coli KTE26]
gi|432410215|ref|ZP_19652901.1| DNA polymerase III subunit epsilon [Escherichia coli KTE39]
gi|432429321|ref|ZP_19671786.1| DNA polymerase III subunit epsilon [Escherichia coli KTE181]
gi|432432280|ref|ZP_19674711.1| DNA polymerase III subunit epsilon [Escherichia coli KTE187]
gi|432434762|ref|ZP_19677172.1| DNA polymerase III subunit epsilon [Escherichia coli KTE188]
gi|432454991|ref|ZP_19697202.1| DNA polymerase III subunit epsilon [Escherichia coli KTE201]
gi|432459150|ref|ZP_19701317.1| DNA polymerase III subunit epsilon [Escherichia coli KTE204]
gi|432464203|ref|ZP_19706315.1| DNA polymerase III subunit epsilon [Escherichia coli KTE205]
gi|432474207|ref|ZP_19716223.1| DNA polymerase III subunit epsilon [Escherichia coli KTE208]
gi|432492514|ref|ZP_19734358.1| DNA polymerase III subunit epsilon [Escherichia coli KTE213]
gi|432494040|ref|ZP_19735862.1| DNA polymerase III subunit epsilon [Escherichia coli KTE214]
gi|432510445|ref|ZP_19749305.1| DNA polymerase III subunit epsilon [Escherichia coli KTE220]
gi|432520859|ref|ZP_19758029.1| DNA polymerase III subunit epsilon [Escherichia coli KTE228]
gi|432522356|ref|ZP_19759500.1| DNA polymerase III subunit epsilon [Escherichia coli KTE230]
gi|432541032|ref|ZP_19777912.1| DNA polymerase III subunit epsilon [Escherichia coli KTE235]
gi|432541595|ref|ZP_19778456.1| DNA polymerase III subunit epsilon [Escherichia coli KTE236]
gi|432546933|ref|ZP_19783732.1| DNA polymerase III subunit epsilon [Escherichia coli KTE237]
gi|432567087|ref|ZP_19803616.1| DNA polymerase III subunit epsilon [Escherichia coli KTE53]
gi|432572235|ref|ZP_19808727.1| DNA polymerase III subunit epsilon [Escherichia coli KTE55]
gi|432582299|ref|ZP_19818712.1| DNA polymerase III subunit epsilon [Escherichia coli KTE57]
gi|432586540|ref|ZP_19822912.1| DNA polymerase III subunit epsilon [Escherichia coli KTE58]
gi|432591216|ref|ZP_19827548.1| DNA polymerase III subunit epsilon [Escherichia coli KTE60]
gi|432596110|ref|ZP_19832399.1| DNA polymerase III subunit epsilon [Escherichia coli KTE62]
gi|432600721|ref|ZP_19836977.1| DNA polymerase III subunit epsilon [Escherichia coli KTE66]
gi|432606078|ref|ZP_19842278.1| DNA polymerase III subunit epsilon [Escherichia coli KTE67]
gi|432620319|ref|ZP_19856367.1| DNA polymerase III subunit epsilon [Escherichia coli KTE76]
gi|432629744|ref|ZP_19865701.1| DNA polymerase III subunit epsilon [Escherichia coli KTE80]
gi|432639288|ref|ZP_19875137.1| DNA polymerase III subunit epsilon [Escherichia coli KTE83]
gi|432649582|ref|ZP_19885352.1| DNA polymerase III subunit epsilon [Escherichia coli KTE87]
gi|432664367|ref|ZP_19899968.1| DNA polymerase III subunit epsilon [Escherichia coli KTE116]
gi|432678627|ref|ZP_19914031.1| DNA polymerase III subunit epsilon [Escherichia coli KTE143]
gi|432717225|ref|ZP_19952228.1| DNA polymerase III subunit epsilon [Escherichia coli KTE9]
gi|432753038|ref|ZP_19987607.1| DNA polymerase III subunit epsilon [Escherichia coli KTE22]
gi|432773366|ref|ZP_20007667.1| DNA polymerase III subunit epsilon [Escherichia coli KTE54]
gi|432777094|ref|ZP_20011349.1| DNA polymerase III subunit epsilon [Escherichia coli KTE59]
gi|432782101|ref|ZP_20016287.1| DNA polymerase III subunit epsilon [Escherichia coli KTE63]
gi|432785888|ref|ZP_20020056.1| DNA polymerase III subunit epsilon [Escherichia coli KTE65]
gi|432791440|ref|ZP_20025534.1| DNA polymerase III subunit epsilon [Escherichia coli KTE78]
gi|432797407|ref|ZP_20031435.1| DNA polymerase III subunit epsilon [Escherichia coli KTE79]
gi|432813720|ref|ZP_20047531.1| DNA polymerase III subunit epsilon [Escherichia coli KTE115]
gi|432819561|ref|ZP_20053275.1| DNA polymerase III subunit epsilon [Escherichia coli KTE118]
gi|432825689|ref|ZP_20059346.1| DNA polymerase III subunit epsilon [Escherichia coli KTE123]
gi|432837770|ref|ZP_20071265.1| DNA polymerase III subunit epsilon [Escherichia coli KTE140]
gi|432842473|ref|ZP_20075900.1| DNA polymerase III subunit epsilon [Escherichia coli KTE141]
gi|432857040|ref|ZP_20084270.1| DNA polymerase III subunit epsilon [Escherichia coli KTE144]
gi|432883942|ref|ZP_20099104.1| DNA polymerase III subunit epsilon [Escherichia coli KTE158]
gi|432896933|ref|ZP_20107976.1| DNA polymerase III subunit epsilon [Escherichia coli KTE192]
gi|432909767|ref|ZP_20117040.1| DNA polymerase III subunit epsilon [Escherichia coli KTE190]
gi|432976917|ref|ZP_20165744.1| DNA polymerase III subunit epsilon [Escherichia coli KTE209]
gi|432993970|ref|ZP_20182590.1| DNA polymerase III subunit epsilon [Escherichia coli KTE218]
gi|432998389|ref|ZP_20186938.1| DNA polymerase III subunit epsilon [Escherichia coli KTE223]
gi|433003753|ref|ZP_20192191.1| DNA polymerase III subunit epsilon [Escherichia coli KTE227]
gi|433010959|ref|ZP_20199364.1| DNA polymerase III subunit epsilon [Escherichia coli KTE229]
gi|433017184|ref|ZP_20205459.1| DNA polymerase III subunit epsilon [Escherichia coli KTE105]
gi|433027231|ref|ZP_20215109.1| DNA polymerase III subunit epsilon [Escherichia coli KTE109]
gi|433051425|ref|ZP_20238673.1| DNA polymerase III subunit epsilon [Escherichia coli KTE122]
gi|433056541|ref|ZP_20243639.1| DNA polymerase III subunit epsilon [Escherichia coli KTE124]
gi|433066331|ref|ZP_20253185.1| DNA polymerase III subunit epsilon [Escherichia coli KTE128]
gi|433071124|ref|ZP_20257839.1| DNA polymerase III subunit epsilon [Escherichia coli KTE129]
gi|433085865|ref|ZP_20272273.1| DNA polymerase III subunit epsilon [Escherichia coli KTE137]
gi|433114150|ref|ZP_20299973.1| DNA polymerase III subunit epsilon [Escherichia coli KTE153]
gi|433118690|ref|ZP_20304411.1| DNA polymerase III subunit epsilon [Escherichia coli KTE157]
gi|433123812|ref|ZP_20309409.1| DNA polymerase III subunit epsilon [Escherichia coli KTE160]
gi|433137882|ref|ZP_20323173.1| DNA polymerase III subunit epsilon [Escherichia coli KTE167]
gi|433147632|ref|ZP_20332716.1| DNA polymerase III subunit epsilon [Escherichia coli KTE174]
gi|433152347|ref|ZP_20337320.1| DNA polymerase III subunit epsilon [Escherichia coli KTE176]
gi|433157148|ref|ZP_20342030.1| DNA polymerase III subunit epsilon [Escherichia coli KTE177]
gi|433161993|ref|ZP_20346762.1| DNA polymerase III subunit epsilon [Escherichia coli KTE179]
gi|433166929|ref|ZP_20351614.1| DNA polymerase III subunit epsilon [Escherichia coli KTE180]
gi|433176571|ref|ZP_20361050.1| DNA polymerase III subunit epsilon [Escherichia coli KTE82]
gi|433181655|ref|ZP_20365964.1| DNA polymerase III subunit epsilon [Escherichia coli KTE85]
gi|433201651|ref|ZP_20385467.1| DNA polymerase III subunit epsilon [Escherichia coli KTE95]
gi|433206383|ref|ZP_20390090.1| DNA polymerase III subunit epsilon [Escherichia coli KTE97]
gi|433211132|ref|ZP_20394754.1| DNA polymerase III subunit epsilon [Escherichia coli KTE99]
gi|26106556|gb|AAN78742.1|AE016755_242 DNA polymerase III, epsilon chain [Escherichia coli CFT073]
gi|91070857|gb|ABE05738.1| DNA polymerase III epsilon chain [Escherichia coli UTI89]
gi|115511621|gb|ABI99695.1| DNA polymerase III subunit epsilon [Escherichia coli APEC O1]
gi|226899002|gb|EEH85261.1| DNA polymerase subunit III epsilon [Escherichia sp. 3_2_53FAA]
gi|227838235|gb|EEJ48701.1| DNA polymerase III subunit epsilon [Escherichia coli 83972]
gi|300356434|gb|EFJ72304.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 198-1]
gi|300407506|gb|EFJ91044.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 45-1]
gi|300458760|gb|EFK22253.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 21-1]
gi|307552062|gb|ADN44837.1| DNA polymerase III, epsilon chain [Escherichia coli ABU 83972]
gi|307628303|gb|ADN72607.1| DNA polymerase III subunit epsilon [Escherichia coli UM146]
gi|315289701|gb|EFU49094.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 110-3]
gi|315292140|gb|EFU51492.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 153-1]
gi|315300178|gb|EFU59415.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 16-3]
gi|331054453|gb|EGI26462.1| DNA polymerase III, epsilon subunit [Escherichia coli TA206]
gi|331081170|gb|EGI52332.1| DNA polymerase III, epsilon subunit [Escherichia coli H299]
gi|355418634|gb|AER82831.1| DNA polymerase III subunit epsilon [Escherichia coli str. 'clone D
i2']
gi|355423554|gb|AER87750.1| DNA polymerase III subunit epsilon [Escherichia coli str. 'clone D
i14']
gi|371592316|gb|EHN81226.1| DNA polymerase III subunit epsilon [Escherichia coli TA124]
gi|371612114|gb|EHO00631.1| DNA polymerase III subunit epsilon [Escherichia coli H397]
gi|388389943|gb|EIL51451.1| DNA polymerase III subunit epsilon [Escherichia coli KD1]
gi|430879381|gb|ELC02712.1| DNA polymerase III subunit epsilon [Escherichia coli KTE4]
gi|430881422|gb|ELC04676.1| DNA polymerase III subunit epsilon [Escherichia coli KTE2]
gi|430891229|gb|ELC13765.1| DNA polymerase III subunit epsilon [Escherichia coli KTE5]
gi|430922848|gb|ELC43586.1| DNA polymerase III subunit epsilon [Escherichia coli KTE21]
gi|430930405|gb|ELC50906.1| DNA polymerase III subunit epsilon [Escherichia coli KTE26]
gi|430938796|gb|ELC59026.1| DNA polymerase III subunit epsilon [Escherichia coli KTE39]
gi|430948244|gb|ELC67923.1| DNA polymerase III subunit epsilon [Escherichia coli KTE181]
gi|430953192|gb|ELC72100.1| DNA polymerase III subunit epsilon [Escherichia coli KTE187]
gi|430967989|gb|ELC85229.1| DNA polymerase III subunit epsilon [Escherichia coli KTE188]
gi|430986272|gb|ELD02844.1| DNA polymerase III subunit epsilon [Escherichia coli KTE201]
gi|430993130|gb|ELD09487.1| DNA polymerase III subunit epsilon [Escherichia coli KTE204]
gi|430997761|gb|ELD14016.1| DNA polymerase III subunit epsilon [Escherichia coli KTE205]
gi|431011233|gb|ELD25316.1| DNA polymerase III subunit epsilon [Escherichia coli KTE208]
gi|431013981|gb|ELD27696.1| DNA polymerase III subunit epsilon [Escherichia coli KTE213]
gi|431029814|gb|ELD42845.1| DNA polymerase III subunit epsilon [Escherichia coli KTE214]
gi|431032588|gb|ELD45298.1| DNA polymerase III subunit epsilon [Escherichia coli KTE220]
gi|431045971|gb|ELD56100.1| DNA polymerase III subunit epsilon [Escherichia coli KTE228]
gi|431055519|gb|ELD65064.1| DNA polymerase III subunit epsilon [Escherichia coli KTE230]
gi|431065187|gb|ELD73964.1| DNA polymerase III subunit epsilon [Escherichia coli KTE235]
gi|431078112|gb|ELD85170.1| DNA polymerase III subunit epsilon [Escherichia coli KTE236]
gi|431086237|gb|ELD92265.1| DNA polymerase III subunit epsilon [Escherichia coli KTE237]
gi|431103381|gb|ELE08033.1| DNA polymerase III subunit epsilon [Escherichia coli KTE53]
gi|431111329|gb|ELE15233.1| DNA polymerase III subunit epsilon [Escherichia coli KTE55]
gi|431121710|gb|ELE24589.1| DNA polymerase III subunit epsilon [Escherichia coli KTE57]
gi|431123820|gb|ELE26474.1| DNA polymerase III subunit epsilon [Escherichia coli KTE58]
gi|431133575|gb|ELE35555.1| DNA polymerase III subunit epsilon [Escherichia coli KTE60]
gi|431133777|gb|ELE35743.1| DNA polymerase III subunit epsilon [Escherichia coli KTE62]
gi|431142346|gb|ELE44096.1| DNA polymerase III subunit epsilon [Escherichia coli KTE67]
gi|431144760|gb|ELE46454.1| DNA polymerase III subunit epsilon [Escherichia coli KTE66]
gi|431163240|gb|ELE63674.1| DNA polymerase III subunit epsilon [Escherichia coli KTE76]
gi|431175087|gb|ELE75108.1| DNA polymerase III subunit epsilon [Escherichia coli KTE80]
gi|431185805|gb|ELE85498.1| DNA polymerase III subunit epsilon [Escherichia coli KTE83]
gi|431194868|gb|ELE94083.1| DNA polymerase III subunit epsilon [Escherichia coli KTE87]
gi|431205231|gb|ELF03730.1| DNA polymerase III subunit epsilon [Escherichia coli KTE116]
gi|431225271|gb|ELF22475.1| DNA polymerase III subunit epsilon [Escherichia coli KTE143]
gi|431267225|gb|ELF58745.1| DNA polymerase III subunit epsilon [Escherichia coli KTE9]
gi|431305819|gb|ELF94136.1| DNA polymerase III subunit epsilon [Escherichia coli KTE22]
gi|431321283|gb|ELG08894.1| DNA polymerase III subunit epsilon [Escherichia coli KTE54]
gi|431331520|gb|ELG18773.1| DNA polymerase III subunit epsilon [Escherichia coli KTE59]
gi|431331813|gb|ELG19056.1| DNA polymerase III subunit epsilon [Escherichia coli KTE63]
gi|431341819|gb|ELG28815.1| DNA polymerase III subunit epsilon [Escherichia coli KTE65]
gi|431342236|gb|ELG29215.1| DNA polymerase III subunit epsilon [Escherichia coli KTE78]
gi|431345627|gb|ELG32541.1| DNA polymerase III subunit epsilon [Escherichia coli KTE79]
gi|431368739|gb|ELG54970.1| DNA polymerase III subunit epsilon [Escherichia coli KTE115]
gi|431370563|gb|ELG56356.1| DNA polymerase III subunit epsilon [Escherichia coli KTE118]
gi|431375073|gb|ELG60417.1| DNA polymerase III subunit epsilon [Escherichia coli KTE123]
gi|431392236|gb|ELG75836.1| DNA polymerase III subunit epsilon [Escherichia coli KTE140]
gi|431394740|gb|ELG78263.1| DNA polymerase III subunit epsilon [Escherichia coli KTE144]
gi|431397752|gb|ELG81186.1| DNA polymerase III subunit epsilon [Escherichia coli KTE141]
gi|431420709|gb|ELH02986.1| DNA polymerase III subunit epsilon [Escherichia coli KTE158]
gi|431430125|gb|ELH11958.1| DNA polymerase III subunit epsilon [Escherichia coli KTE192]
gi|431448817|gb|ELH29530.1| DNA polymerase III subunit epsilon [Escherichia coli KTE190]
gi|431483875|gb|ELH63564.1| DNA polymerase III subunit epsilon [Escherichia coli KTE209]
gi|431510753|gb|ELH88995.1| DNA polymerase III subunit epsilon [Escherichia coli KTE218]
gi|431515657|gb|ELH93474.1| DNA polymerase III subunit epsilon [Escherichia coli KTE223]
gi|431517074|gb|ELH94596.1| DNA polymerase III subunit epsilon [Escherichia coli KTE227]
gi|431519171|gb|ELH96623.1| DNA polymerase III subunit epsilon [Escherichia coli KTE229]
gi|431537891|gb|ELI14000.1| DNA polymerase III subunit epsilon [Escherichia coli KTE105]
gi|431546653|gb|ELI21045.1| DNA polymerase III subunit epsilon [Escherichia coli KTE109]
gi|431575095|gb|ELI47843.1| DNA polymerase III subunit epsilon [Escherichia coli KTE124]
gi|431576274|gb|ELI48966.1| DNA polymerase III subunit epsilon [Escherichia coli KTE122]
gi|431592896|gb|ELI63464.1| DNA polymerase III subunit epsilon [Escherichia coli KTE128]
gi|431595441|gb|ELI65439.1| DNA polymerase III subunit epsilon [Escherichia coli KTE129]
gi|431610549|gb|ELI79838.1| DNA polymerase III subunit epsilon [Escherichia coli KTE137]
gi|431637463|gb|ELJ05525.1| DNA polymerase III subunit epsilon [Escherichia coli KTE153]
gi|431650301|gb|ELJ17636.1| DNA polymerase III subunit epsilon [Escherichia coli KTE157]
gi|431650748|gb|ELJ18061.1| DNA polymerase III subunit epsilon [Escherichia coli KTE160]
gi|431665649|gb|ELJ32365.1| DNA polymerase III subunit epsilon [Escherichia coli KTE167]
gi|431678858|gb|ELJ44778.1| DNA polymerase III subunit epsilon [Escherichia coli KTE176]
gi|431678888|gb|ELJ44807.1| DNA polymerase III subunit epsilon [Escherichia coli KTE174]
gi|431683040|gb|ELJ48683.1| DNA polymerase III subunit epsilon [Escherichia coli KTE177]
gi|431693012|gb|ELJ58432.1| DNA polymerase III subunit epsilon [Escherichia coli KTE179]
gi|431694938|gb|ELJ60280.1| DNA polymerase III subunit epsilon [Escherichia coli KTE180]
gi|431711489|gb|ELJ75808.1| DNA polymerase III subunit epsilon [Escherichia coli KTE82]
gi|431712586|gb|ELJ76875.1| DNA polymerase III subunit epsilon [Escherichia coli KTE85]
gi|431726890|gb|ELJ90655.1| DNA polymerase III subunit epsilon [Escherichia coli KTE95]
gi|431733796|gb|ELJ97202.1| DNA polymerase III subunit epsilon [Escherichia coli KTE97]
gi|431736426|gb|ELJ99753.1| DNA polymerase III subunit epsilon [Escherichia coli KTE99]
Length = 246
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|332535809|ref|ZP_08411542.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
ANT/505]
gi|332034787|gb|EGI71325.1| DNA polymerase III epsilon subunit [Pseudoalteromonas haloplanktis
ANT/505]
Length = 237
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 155/234 (66%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGNN H YINP R SE+ A+ +HG+T
Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRPSEEEAIDVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL++K F +I F +Y+ +E++IHNA FDVG +D E +LL GY T+ ++ D
Sbjct: 64 EFLRDKPLFHQIAQEFFDYIEGAELVIHNAPFDVGHMDNEFALLNQGYPK-TETFCQVLD 122
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-K 179
TL MAR +H G++N+LDALC RY++ RTLHG LLD+E+LA+VYLAMT GQ+ LN +
Sbjct: 123 TLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQTKLNLNQ 182
Query: 180 PKINNSNNIETKIKIPNNIPIKL----ANSNELVQHNMILSKIDKHSNGRCIWK 229
K + S + IK N+ L A+ E H L ++K G+CIW+
Sbjct: 183 NKDDGSEQQKGGIKRLNSDRAPLVVLRASDTEQSAHEARLDLVNKEG-GQCIWR 235
>gi|237803575|ref|ZP_04591160.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae
str. 1_6]
gi|331025557|gb|EGI05613.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. oryzae
str. 1_6]
Length = 257
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 157/240 (65%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG---YSNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G S+ T++ I
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGDQDRSDITRHCS-IL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINN---------SNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ + E + N P ++ A+ +EL +H + +S I K S +W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPANRKPCRVIRASESELAEHEVRMSTIAKASGASALW 247
>gi|331645384|ref|ZP_08346488.1| DNA polymerase III, epsilon subunit [Escherichia coli M605]
gi|432396067|ref|ZP_19638859.1| DNA polymerase III subunit epsilon [Escherichia coli KTE25]
gi|432405099|ref|ZP_19647822.1| DNA polymerase III subunit epsilon [Escherichia coli KTE28]
gi|432420335|ref|ZP_19662893.1| DNA polymerase III subunit epsilon [Escherichia coli KTE178]
gi|432498511|ref|ZP_19740291.1| DNA polymerase III subunit epsilon [Escherichia coli KTE216]
gi|432557242|ref|ZP_19793935.1| DNA polymerase III subunit epsilon [Escherichia coli KTE49]
gi|432693051|ref|ZP_19928266.1| DNA polymerase III subunit epsilon [Escherichia coli KTE162]
gi|432709056|ref|ZP_19944125.1| DNA polymerase III subunit epsilon [Escherichia coli KTE6]
gi|432721813|ref|ZP_19956741.1| DNA polymerase III subunit epsilon [Escherichia coli KTE17]
gi|432726308|ref|ZP_19961191.1| DNA polymerase III subunit epsilon [Escherichia coli KTE18]
gi|432739990|ref|ZP_19974712.1| DNA polymerase III subunit epsilon [Escherichia coli KTE23]
gi|432917215|ref|ZP_20121869.1| DNA polymerase III subunit epsilon [Escherichia coli KTE173]
gi|432924493|ref|ZP_20126780.1| DNA polymerase III subunit epsilon [Escherichia coli KTE175]
gi|432979770|ref|ZP_20168551.1| DNA polymerase III subunit epsilon [Escherichia coli KTE211]
gi|432989304|ref|ZP_20177974.1| DNA polymerase III subunit epsilon [Escherichia coli KTE217]
gi|433095125|ref|ZP_20281343.1| DNA polymerase III subunit epsilon [Escherichia coli KTE139]
gi|433104402|ref|ZP_20290425.1| DNA polymerase III subunit epsilon [Escherichia coli KTE148]
gi|433109391|ref|ZP_20295274.1| DNA polymerase III subunit epsilon [Escherichia coli KTE150]
gi|331045546|gb|EGI17672.1| DNA polymerase III, epsilon subunit [Escherichia coli M605]
gi|430918449|gb|ELC39450.1| DNA polymerase III subunit epsilon [Escherichia coli KTE25]
gi|430932595|gb|ELC53014.1| DNA polymerase III subunit epsilon [Escherichia coli KTE28]
gi|430947500|gb|ELC67197.1| DNA polymerase III subunit epsilon [Escherichia coli KTE178]
gi|431032105|gb|ELD44816.1| DNA polymerase III subunit epsilon [Escherichia coli KTE216]
gi|431094295|gb|ELD99926.1| DNA polymerase III subunit epsilon [Escherichia coli KTE49]
gi|431237193|gb|ELF32193.1| DNA polymerase III subunit epsilon [Escherichia coli KTE162]
gi|431252777|gb|ELF46291.1| DNA polymerase III subunit epsilon [Escherichia coli KTE6]
gi|431268558|gb|ELF60027.1| DNA polymerase III subunit epsilon [Escherichia coli KTE17]
gi|431276416|gb|ELF67436.1| DNA polymerase III subunit epsilon [Escherichia coli KTE18]
gi|431286119|gb|ELF76945.1| DNA polymerase III subunit epsilon [Escherichia coli KTE23]
gi|431447867|gb|ELH28587.1| DNA polymerase III subunit epsilon [Escherichia coli KTE173]
gi|431450134|gb|ELH30626.1| DNA polymerase III subunit epsilon [Escherichia coli KTE175]
gi|431496391|gb|ELH75974.1| DNA polymerase III subunit epsilon [Escherichia coli KTE211]
gi|431498549|gb|ELH77734.1| DNA polymerase III subunit epsilon [Escherichia coli KTE217]
gi|431620003|gb|ELI88891.1| DNA polymerase III subunit epsilon [Escherichia coli KTE139]
gi|431632934|gb|ELJ01219.1| DNA polymerase III subunit epsilon [Escherichia coli KTE150]
gi|431634426|gb|ELJ02667.1| DNA polymerase III subunit epsilon [Escherichia coli KTE148]
Length = 246
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGTCLWR 245
>gi|74310830|ref|YP_309249.1| DNA polymerase III subunit epsilon [Shigella sonnei Ss046]
gi|82542808|ref|YP_406755.1| DNA polymerase III subunit epsilon [Shigella boydii Sb227]
gi|157156660|ref|YP_001461381.1| DNA polymerase III subunit epsilon [Escherichia coli E24377A]
gi|157159676|ref|YP_001456994.1| DNA polymerase III subunit epsilon [Escherichia coli HS]
gi|187734104|ref|YP_001879012.1| DNA polymerase III subunit epsilon [Shigella boydii CDC 3083-94]
gi|191167032|ref|ZP_03028854.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A]
gi|193067693|ref|ZP_03048660.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019]
gi|194427534|ref|ZP_03060082.1| DNA polymerase III, epsilon subunit [Escherichia coli B171]
gi|194432694|ref|ZP_03064979.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012]
gi|209917402|ref|YP_002291486.1| DNA polymerase III subunit epsilon [Escherichia coli SE11]
gi|218552790|ref|YP_002385703.1| DNA polymerase III subunit epsilon [Escherichia coli IAI1]
gi|218693677|ref|YP_002401344.1| DNA polymerase III subunit epsilon [Escherichia coli 55989]
gi|260842441|ref|YP_003220219.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2
str. 12009]
gi|260853420|ref|YP_003227311.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
11368]
gi|260866358|ref|YP_003232760.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H- str.
11128]
gi|293418309|ref|ZP_06660744.1| DNA polymerase III [Escherichia coli B088]
gi|332281343|ref|ZP_08393756.1| DNA polymerase III epsilon subunit [Shigella sp. D9]
gi|383176818|ref|YP_005454823.1| DNA polymerase III subunit epsilon [Shigella sonnei 53G]
gi|386698708|ref|YP_006162545.1| DNA polymerase III subunit epsilon [Escherichia coli KO11FL]
gi|407467666|ref|YP_006785892.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
2009EL-2071]
gi|407483617|ref|YP_006780766.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
2011C-3493]
gi|410484157|ref|YP_006771703.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
2009EL-2050]
gi|414574401|ref|ZP_11431615.1| DNA polymerase III, epsilon subunit [Shigella sonnei 3233-85]
gi|415801848|ref|ZP_11499771.1| DNA polymerase III, epsilon subunit [Escherichia coli E128010]
gi|415814314|ref|ZP_11505934.1| DNA polymerase III, epsilon subunit [Escherichia coli LT-68]
gi|415824026|ref|ZP_11512401.1| DNA polymerase III, epsilon subunit [Escherichia coli OK1180]
gi|415832612|ref|ZP_11518003.1| DNA polymerase III, epsilon subunit [Escherichia coli OK1357]
gi|415850027|ref|ZP_11527059.1| DNA polymerase III, epsilon subunit [Shigella sonnei 53G]
gi|416294777|ref|ZP_11650991.1| DNA polymerase III epsilon subunit [Shigella flexneri CDC 796-83]
gi|416342456|ref|ZP_11676687.1| DNA polymerase III epsilon subunit [Escherichia coli EC4100B]
gi|417126568|ref|ZP_11974122.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0246]
gi|417133945|ref|ZP_11978730.1| DNA polymerase III, epsilon subunit [Escherichia coli 5.0588]
gi|417168450|ref|ZP_12000901.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0741]
gi|417174878|ref|ZP_12004674.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.2608]
gi|417181961|ref|ZP_12008797.1| DNA polymerase III, epsilon subunit [Escherichia coli 93.0624]
gi|417190922|ref|ZP_12013518.1| DNA polymerase III, epsilon subunit [Escherichia coli 4.0522]
gi|417225033|ref|ZP_12028324.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.154]
gi|417246750|ref|ZP_12039851.1| DNA polymerase III, epsilon subunit [Escherichia coli 9.0111]
gi|417295403|ref|ZP_12082656.1| DNA polymerase III, epsilon subunit [Escherichia coli 900105 (10e)]
gi|417579432|ref|ZP_12230257.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_B2F1]
gi|417589832|ref|ZP_12240553.1| DNA polymerase III, epsilon subunit [Escherichia coli 2534-86]
gi|417595061|ref|ZP_12245737.1| DNA polymerase III, epsilon subunit [Escherichia coli 3030-1]
gi|417600477|ref|ZP_12251063.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_94C]
gi|417606142|ref|ZP_12256674.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_DG131-3]
gi|417621445|ref|ZP_12271775.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_H.1.8]
gi|417665282|ref|ZP_12314850.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_O31]
gi|417671087|ref|ZP_12320587.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 155-74]
gi|417682634|ref|ZP_12331988.1| DNA polymerase III, epsilon subunit [Shigella boydii 3594-74]
gi|417688023|ref|ZP_12337273.1| DNA polymerase III, epsilon subunit [Shigella boydii 5216-82]
gi|417803556|ref|ZP_12450594.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
LB226692]
gi|417831320|ref|ZP_12477845.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
01-09591]
gi|417868379|ref|ZP_12513407.1| dnaQ [Escherichia coli O104:H4 str. C227-11]
gi|418261714|ref|ZP_12883636.1| DNA polymerase III, epsilon subunit [Shigella sonnei str. Moseley]
gi|418942829|ref|ZP_13496075.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H43 str.
T22]
gi|419195172|ref|ZP_13738586.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8A]
gi|419206742|ref|ZP_13749880.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8B]
gi|419207164|ref|ZP_13750294.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8C]
gi|419213587|ref|ZP_13756621.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8D]
gi|419219430|ref|ZP_13762389.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8E]
gi|419224897|ref|ZP_13767790.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9A]
gi|419230762|ref|ZP_13773557.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9B]
gi|419236028|ref|ZP_13778780.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9C]
gi|419241614|ref|ZP_13784265.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9D]
gi|419247018|ref|ZP_13789636.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9E]
gi|419257106|ref|ZP_13799605.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10A]
gi|419258795|ref|ZP_13801258.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10B]
gi|419269545|ref|ZP_13811886.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10C]
gi|419270486|ref|ZP_13812819.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10D]
gi|419276319|ref|ZP_13818589.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10E]
gi|419281847|ref|ZP_13824071.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10F]
gi|419290572|ref|ZP_13832661.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11A]
gi|419293022|ref|ZP_13835083.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11B]
gi|419298403|ref|ZP_13840427.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11C]
gi|419304722|ref|ZP_13846638.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11D]
gi|419309779|ref|ZP_13851656.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11E]
gi|419315056|ref|ZP_13856889.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12A]
gi|419320858|ref|ZP_13862602.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12B]
gi|419327057|ref|ZP_13868693.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12C]
gi|419332473|ref|ZP_13874039.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12D]
gi|419339461|ref|ZP_13880938.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12E]
gi|419343870|ref|ZP_13885255.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13A]
gi|419348302|ref|ZP_13889656.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13B]
gi|419353205|ref|ZP_13894492.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13C]
gi|419358549|ref|ZP_13899780.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13D]
gi|419363562|ref|ZP_13904745.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13E]
gi|419368493|ref|ZP_13909626.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14A]
gi|419373650|ref|ZP_13914711.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14B]
gi|419379079|ref|ZP_13920060.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14C]
gi|419384333|ref|ZP_13925240.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14D]
gi|419389630|ref|ZP_13930472.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15A]
gi|419394803|ref|ZP_13935589.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15B]
gi|419401686|ref|ZP_13942412.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15C]
gi|419405333|ref|ZP_13946037.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15D]
gi|419410844|ref|ZP_13951519.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15E]
gi|419806185|ref|ZP_14331300.1| DNA polymerase III, epsilon subunit [Escherichia coli AI27]
gi|419866131|ref|ZP_14388501.1| DNA polymerase III subunit epsilon [Escherichia coli O103:H25 str.
CVM9340]
gi|419871697|ref|ZP_14393748.1| DNA polymerase III subunit epsilon [Escherichia coli O103:H2 str.
CVM9450]
gi|419878418|ref|ZP_14399888.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9534]
gi|419884843|ref|ZP_14405719.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9545]
gi|419892666|ref|ZP_14412677.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9570]
gi|419896734|ref|ZP_14416396.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9574]
gi|419904437|ref|ZP_14423435.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM9942]
gi|419910528|ref|ZP_14429045.1| hypothetical protein ECO10026_29514 [Escherichia coli O26:H11 str.
CVM10026]
gi|419923486|ref|ZP_14441431.1| DNA polymerase III subunit epsilon [Escherichia coli 541-15]
gi|419927812|ref|ZP_14445539.1| DNA polymerase III subunit epsilon [Escherichia coli 541-1]
gi|420090763|ref|ZP_14602527.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9602]
gi|420097520|ref|ZP_14608818.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9634]
gi|420104734|ref|ZP_14615381.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9455]
gi|420111314|ref|ZP_14621151.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9553]
gi|420117697|ref|ZP_14627051.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM10021]
gi|420123519|ref|ZP_14632407.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM10030]
gi|420129489|ref|ZP_14638020.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM10224]
gi|420135692|ref|ZP_14643771.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM9952]
gi|420323868|ref|ZP_14825658.1| DNA polymerase III, epsilon subunit [Shigella flexneri CCH060]
gi|420334475|ref|ZP_14836097.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-315]
gi|420345310|ref|ZP_14846743.1| DNA polymerase III, epsilon subunit [Shigella boydii 965-58]
gi|420355642|ref|ZP_14856700.1| DNA polymerase III, epsilon subunit [Shigella boydii 4444-74]
gi|420361196|ref|ZP_14862139.1| DNA polymerase III, epsilon subunit [Shigella sonnei 3226-85]
gi|420361791|ref|ZP_14862722.1| DNA polymerase III, epsilon subunit [Shigella sonnei 4822-66]
gi|420378538|ref|ZP_14878041.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 225-75]
gi|421680933|ref|ZP_16120773.1| DNA polymerase III, epsilon subunit [Shigella flexneri 1485-80]
gi|422764643|ref|ZP_16818389.1| DNA polymerase III [Escherichia coli E1167]
gi|424751749|ref|ZP_18179775.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CFSAN001629]
gi|424766181|ref|ZP_18193539.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CFSAN001630]
gi|424772722|ref|ZP_18199812.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CFSAN001632]
gi|425376963|ref|ZP_18761386.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1865]
gi|425420810|ref|ZP_18802047.1| DNA polymerase III, epsilon subunit [Escherichia coli 0.1288]
gi|450209941|ref|ZP_21893999.1| DNA polymerase III subunit epsilon [Escherichia coli O08]
gi|73854307|gb|AAZ87014.1| DNA polymerase III epsilon subunit [Shigella sonnei Ss046]
gi|81244219|gb|ABB64927.1| DNA polymerase III epsilon subunit [Shigella boydii Sb227]
gi|157065356|gb|ABV04611.1| DNA polymerase III, epsilon subunit [Escherichia coli HS]
gi|157078690|gb|ABV18398.1| DNA polymerase III, epsilon subunit [Escherichia coli E24377A]
gi|187431096|gb|ACD10370.1| DNA polymerase III, epsilon subunit [Shigella boydii CDC 3083-94]
gi|190902925|gb|EDV62652.1| DNA polymerase III, epsilon subunit [Escherichia coli B7A]
gi|192959105|gb|EDV89541.1| DNA polymerase III, epsilon subunit [Escherichia coli E110019]
gi|194414304|gb|EDX30578.1| DNA polymerase III, epsilon subunit [Escherichia coli B171]
gi|194418956|gb|EDX35040.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1012]
gi|209910661|dbj|BAG75735.1| DNA polymerase III epsilon subunit [Escherichia coli SE11]
gi|218350409|emb|CAU96094.1| DNA polymerase III epsilon subunit [Escherichia coli 55989]
gi|218359558|emb|CAQ97098.1| DNA polymerase III epsilon subunit [Escherichia coli IAI1]
gi|257752069|dbj|BAI23571.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O26:H11
str. 11368]
gi|257757588|dbj|BAI29085.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O103:H2
str. 12009]
gi|257762714|dbj|BAI34209.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli O111:H-
str. 11128]
gi|291324837|gb|EFE64252.1| DNA polymerase III [Escherichia coli B088]
gi|320186397|gb|EFW61129.1| DNA polymerase III epsilon subunit [Shigella flexneri CDC 796-83]
gi|320201190|gb|EFW75773.1| DNA polymerase III epsilon subunit [Escherichia coli EC4100B]
gi|323160256|gb|EFZ46213.1| DNA polymerase III, epsilon subunit [Escherichia coli E128010]
gi|323165914|gb|EFZ51696.1| DNA polymerase III, epsilon subunit [Shigella sonnei 53G]
gi|323171002|gb|EFZ56651.1| DNA polymerase III, epsilon subunit [Escherichia coli LT-68]
gi|323176527|gb|EFZ62119.1| DNA polymerase III, epsilon subunit [Escherichia coli OK1180]
gi|323181627|gb|EFZ67042.1| DNA polymerase III, epsilon subunit [Escherichia coli OK1357]
gi|324115459|gb|EGC09401.1| DNA polymerase III [Escherichia coli E1167]
gi|332093741|gb|EGI98796.1| DNA polymerase III, epsilon subunit [Shigella boydii 3594-74]
gi|332095033|gb|EGJ00068.1| DNA polymerase III, epsilon subunit [Shigella boydii 5216-82]
gi|332097572|gb|EGJ02551.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 155-74]
gi|332103695|gb|EGJ07041.1| DNA polymerase III epsilon subunit [Shigella sp. D9]
gi|340736007|gb|EGR65060.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
01-09591]
gi|340741832|gb|EGR75975.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
LB226692]
gi|341921668|gb|EGT71265.1| dnaQ [Escherichia coli O104:H4 str. C227-11]
gi|345344400|gb|EGW76769.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_B2F1]
gi|345346190|gb|EGW78526.1| DNA polymerase III, epsilon subunit [Escherichia coli 2534-86]
gi|345354379|gb|EGW86603.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_94C]
gi|345363273|gb|EGW95416.1| DNA polymerase III, epsilon subunit [Escherichia coli 3030-1]
gi|345366211|gb|EGW98307.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_DG131-3]
gi|345386893|gb|EGX16725.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_H.1.8]
gi|375321859|gb|EHS67658.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H43 str.
T22]
gi|378040210|gb|EHW02683.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8B]
gi|378054177|gb|EHW16460.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8A]
gi|378063846|gb|EHW26009.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8C]
gi|378069633|gb|EHW31722.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8D]
gi|378073352|gb|EHW35404.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC8E]
gi|378082878|gb|EHW44819.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9A]
gi|378083309|gb|EHW45243.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9B]
gi|378091090|gb|EHW52923.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9C]
gi|378095371|gb|EHW57158.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9D]
gi|378097238|gb|EHW58995.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10A]
gi|378103698|gb|EHW65363.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC9E]
gi|378106890|gb|EHW68517.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10C]
gi|378118161|gb|EHW79669.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10B]
gi|378121431|gb|EHW82882.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10D]
gi|378128346|gb|EHW89728.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11A]
gi|378134508|gb|EHW95829.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10E]
gi|378140492|gb|EHX01716.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC10F]
gi|378147133|gb|EHX08281.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11B]
gi|378153697|gb|EHX14778.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11D]
gi|378157398|gb|EHX18430.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11C]
gi|378161502|gb|EHX22478.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC11E]
gi|378175889|gb|EHX36700.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12B]
gi|378176553|gb|EHX37359.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12A]
gi|378177460|gb|EHX38254.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12C]
gi|378190739|gb|EHX51320.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13A]
gi|378190927|gb|EHX51503.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12E]
gi|378192108|gb|EHX52674.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC12D]
gi|378205527|gb|EHX65940.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13B]
gi|378208114|gb|EHX68498.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13D]
gi|378209457|gb|EHX69828.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13C]
gi|378220229|gb|EHX80493.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC13E]
gi|378223137|gb|EHX83366.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14A]
gi|378227205|gb|EHX87378.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14B]
gi|378234224|gb|EHX94302.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14C]
gi|378237684|gb|EHX97706.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC14D]
gi|378246071|gb|EHY06007.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15A]
gi|378248613|gb|EHY08526.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15C]
gi|378252323|gb|EHY12216.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15B]
gi|378257722|gb|EHY17558.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15D]
gi|378261516|gb|EHY21309.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC15E]
gi|383390235|gb|AFH15193.1| DNA polymerase III subunit epsilon [Escherichia coli KO11FL]
gi|384470802|gb|EIE54898.1| DNA polymerase III, epsilon subunit [Escherichia coli AI27]
gi|386144818|gb|EIG91282.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0246]
gi|386151799|gb|EIH03088.1| DNA polymerase III, epsilon subunit [Escherichia coli 5.0588]
gi|386170498|gb|EIH42551.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0741]
gi|386177570|gb|EIH55049.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.2608]
gi|386184950|gb|EIH67686.1| DNA polymerase III, epsilon subunit [Escherichia coli 93.0624]
gi|386191894|gb|EIH80635.1| DNA polymerase III, epsilon subunit [Escherichia coli 4.0522]
gi|386200081|gb|EIH99072.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.154]
gi|386209378|gb|EII19865.1| DNA polymerase III, epsilon subunit [Escherichia coli 9.0111]
gi|386261022|gb|EIJ16490.1| DNA polymerase III, epsilon subunit [Escherichia coli 900105 (10e)]
gi|388335221|gb|EIL01793.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9534]
gi|388335841|gb|EIL02391.1| DNA polymerase III subunit epsilon [Escherichia coli O103:H25 str.
CVM9340]
gi|388336595|gb|EIL03133.1| DNA polymerase III subunit epsilon [Escherichia coli O103:H2 str.
CVM9450]
gi|388347212|gb|EIL12898.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9570]
gi|388352823|gb|EIL17909.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9545]
gi|388357058|gb|EIL21677.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9574]
gi|388367555|gb|EIL31228.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM9942]
gi|388371450|gb|EIL34928.1| hypothetical protein ECO10026_29514 [Escherichia coli O26:H11 str.
CVM10026]
gi|388393749|gb|EIL55104.1| DNA polymerase III subunit epsilon [Escherichia coli 541-15]
gi|388406698|gb|EIL67089.1| DNA polymerase III subunit epsilon [Escherichia coli 541-1]
gi|391257743|gb|EIQ16853.1| DNA polymerase III, epsilon subunit [Shigella flexneri CCH060]
gi|391268166|gb|EIQ27094.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-315]
gi|391271659|gb|EIQ30529.1| DNA polymerase III, epsilon subunit [Shigella boydii 4444-74]
gi|391276593|gb|EIQ35362.1| DNA polymerase III, epsilon subunit [Shigella boydii 965-58]
gi|391277516|gb|EIQ36255.1| DNA polymerase III, epsilon subunit [Shigella sonnei 3226-85]
gi|391289986|gb|EIQ48466.1| DNA polymerase III, epsilon subunit [Shigella sonnei 3233-85]
gi|391297248|gb|EIQ55306.1| DNA polymerase III, epsilon subunit [Shigella sonnei 4822-66]
gi|391307294|gb|EIQ65031.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 225-75]
gi|394382547|gb|EJE60180.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM10224]
gi|394384027|gb|EJE61601.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9634]
gi|394385324|gb|EJE62861.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CVM9602]
gi|394398560|gb|EJE74725.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9553]
gi|394401791|gb|EJE77564.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM10021]
gi|394403133|gb|EJE78802.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CVM9455]
gi|394416828|gb|EJE90595.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM10030]
gi|394419614|gb|EJE93200.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CVM9952]
gi|397787073|gb|EJK97903.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_O31]
gi|397903433|gb|EJL19731.1| DNA polymerase III, epsilon subunit [Shigella sonnei str. Moseley]
gi|404342085|gb|EJZ68477.1| DNA polymerase III, epsilon subunit [Shigella flexneri 1485-80]
gi|406779319|gb|AFS58743.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
2009EL-2050]
gi|407055914|gb|AFS75965.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
2011C-3493]
gi|407063701|gb|AFS84748.1| DNA polymerase III subunit epsilon [Escherichia coli O104:H4 str.
2009EL-2071]
gi|408310853|gb|EKJ27893.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1865]
gi|408348179|gb|EKJ62296.1| DNA polymerase III, epsilon subunit [Escherichia coli 0.1288]
gi|421934769|gb|EKT92516.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H11 str.
CFSAN001630]
gi|421937813|gb|EKT95410.1| DNA polymerase III subunit epsilon [Escherichia coli O111:H8 str.
CFSAN001632]
gi|421938962|gb|EKT96494.1| DNA polymerase III subunit epsilon [Escherichia coli O26:H11 str.
CFSAN001629]
gi|449323382|gb|EMD13342.1| DNA polymerase III subunit epsilon [Escherichia coli O08]
Length = 243
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L ++K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVEK-KGGSCLWR 242
>gi|195938587|ref|ZP_03083969.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
EC4024]
gi|217324145|ref|ZP_03440229.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
TW14588]
gi|416780728|ref|ZP_11877004.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
G5101]
gi|416792009|ref|ZP_11881926.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str.
493-89]
gi|416813900|ref|ZP_11891393.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
3256-97]
gi|416824594|ref|ZP_11896059.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
USDA 5905]
gi|432452964|ref|ZP_19695211.1| DNA polymerase III subunit epsilon [Escherichia coli KTE193]
gi|432944781|ref|ZP_20141186.1| DNA polymerase III subunit epsilon [Escherichia coli KTE196]
gi|433031619|ref|ZP_20219441.1| DNA polymerase III subunit epsilon [Escherichia coli KTE112]
gi|433041707|ref|ZP_20229244.1| DNA polymerase III subunit epsilon [Escherichia coli KTE117]
gi|452967197|ref|ZP_21965424.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
EC4009]
gi|217320366|gb|EEC28790.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
TW14588]
gi|320638235|gb|EFX07963.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
G5101]
gi|320643619|gb|EFX12763.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str.
493-89]
gi|320654630|gb|EFX22631.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
3256-97 TW 07815]
gi|320660198|gb|EFX27708.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
USDA 5905]
gi|430975558|gb|ELC92453.1| DNA polymerase III subunit epsilon [Escherichia coli KTE193]
gi|431463797|gb|ELH43920.1| DNA polymerase III subunit epsilon [Escherichia coli KTE196]
gi|431560862|gb|ELI34368.1| DNA polymerase III subunit epsilon [Escherichia coli KTE117]
gi|431561097|gb|ELI34484.1| DNA polymerase III subunit epsilon [Escherichia coli KTE112]
Length = 246
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGEATIQRLVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|188494951|ref|ZP_03002221.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638]
gi|194438247|ref|ZP_03070339.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1]
gi|251783772|ref|YP_002998076.1| DNA polymerase III, epsilon subunit, subunit of DNA polymerase III,
core enzyme and DNA polymerase III, holoenzyme
[Escherichia coli BL21(DE3)]
gi|254160329|ref|YP_003043437.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606]
gi|254287132|ref|YP_003052880.1| DNA polymerase III subunit epsilon [Escherichia coli BL21(DE3)]
gi|312970313|ref|ZP_07784494.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70]
gi|387610681|ref|YP_006113797.1| DNA polymerase III subunit epsilon [Escherichia coli ETEC H10407]
gi|417637478|ref|ZP_12287659.1| DNA polymerase III, epsilon subunit [Escherichia coli TX1999]
gi|419183994|ref|ZP_13727557.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7C]
gi|419184691|ref|ZP_13728217.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7D]
gi|419189959|ref|ZP_13733431.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7E]
gi|420383851|ref|ZP_14883243.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa12]
gi|425286730|ref|ZP_18677679.1| DNA polymerase III, epsilon subunit [Escherichia coli 3006]
gi|425303732|ref|ZP_18693538.1| DNA polymerase III, epsilon subunit [Escherichia coli N1]
gi|427803284|ref|ZP_18970351.1| DNA polymerase III [Escherichia coli chi7122]
gi|427807889|ref|ZP_18974954.1| DNA polymerase III, epsilon subunit [Escherichia coli]
gi|443616223|ref|YP_007380079.1| DNA polymerase III, epsilon subunit-related 3-5 exonuclease
[Escherichia coli APEC O78]
gi|188490150|gb|EDU65253.1| DNA polymerase III, epsilon subunit [Escherichia coli 53638]
gi|194422911|gb|EDX38906.1| DNA polymerase III, epsilon subunit [Escherichia coli 101-1]
gi|242376045|emb|CAQ30730.1| DNA polymerase III, epsilon subunit, subunit of DNA polymerase III,
core enzyme and DNA polymerase III, holoenzyme
[Escherichia coli BL21(DE3)]
gi|253972230|gb|ACT37901.1| DNA polymerase III subunit epsilon [Escherichia coli B str. REL606]
gi|253976439|gb|ACT42109.1| DNA polymerase III subunit epsilon [Escherichia coli BL21(DE3)]
gi|309700417|emb|CBI99706.1| DNA polymerase III epsilon subunit [Escherichia coli ETEC H10407]
gi|310336962|gb|EFQ02100.1| DNA polymerase III, epsilon subunit [Escherichia coli 1827-70]
gi|345395798|gb|EGX25536.1| DNA polymerase III, epsilon subunit [Escherichia coli TX1999]
gi|378019829|gb|EHV82629.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7C]
gi|378034318|gb|EHV96884.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7D]
gi|378043023|gb|EHW05462.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7E]
gi|391310200|gb|EIQ67856.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa12]
gi|408219543|gb|EKI43682.1| DNA polymerase III, epsilon subunit [Escherichia coli 3006]
gi|408232476|gb|EKI55674.1| DNA polymerase III, epsilon subunit [Escherichia coli N1]
gi|412961466|emb|CCK45371.1| DNA polymerase III [Escherichia coli chi7122]
gi|412968068|emb|CCJ42681.1| DNA polymerase III, epsilon subunit [Escherichia coli]
gi|443420731|gb|AGC85635.1| DNA polymerase III, epsilon subunit-related 3-5 exonuclease
[Escherichia coli APEC O78]
Length = 243
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A +EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDDELAAHEARLDLVQK-KGGSCLWR 242
>gi|417627110|ref|ZP_12277359.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_MHI813]
gi|345378684|gb|EGX10609.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_MHI813]
Length = 243
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + I A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRIVRQASKLRIVFATDEELAAHEARLDLVQK-KGGSCLWR 242
>gi|292493431|ref|YP_003528870.1| DNA polymerase III subunit epsilon [Nitrosococcus halophilus Nc4]
gi|291582026|gb|ADE16483.1| DNA polymerase III, epsilon subunit [Nitrosococcus halophilus Nc4]
Length = 242
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 152/234 (64%), Gaps = 8/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL +GHRIIEIG VE+ NR+ TG H Y+NP R ++ AL +HGL+
Sbjct: 2 RQIILDTETTGLEPKEGHRIIEIGGVELINRRRTGQTFHCYLNPERRVDEGALKVHGLSN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RITDT 121
+FL +K +F E+ + FL ++ +E++IHNA FDVGFLD ELSLLG +Y ++ DT
Sbjct: 62 EFLSDKPRFVEVAEEFLAFIREAELVIHNAPFDVGFLDHELSLLGSQWGKVSLYCQVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK-- 179
L++AR+ H G++NSLDALC RY + R LHG LLDAE+LA VYLAMT GQ++L+ +
Sbjct: 122 LVLARQRHPGQKNSLDALCKRYGVDNSRRDLHGALLDAEILAGVYLAMTGGQASLSLRGY 181
Query: 180 -PKINNSNNIETKIK--IPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
+ + S E K + P+K+ A+ E H L+ IDK S G C+W
Sbjct: 182 GGEDSQSQPGEGKYRPVAAKRPPLKVVRASEEERSAHQARLAAIDKVSGGACLW 235
>gi|344339639|ref|ZP_08770567.1| DNA polymerase III, epsilon subunit [Thiocapsa marina 5811]
gi|343800375|gb|EGV18321.1| DNA polymerase III, epsilon subunit [Thiocapsa marina 5811]
Length = 239
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 151/236 (63%), Gaps = 12/236 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ GHRIIEIGCVE+ +R++TGNN H Y+ P R + A +HG+T
Sbjct: 2 RQIVLDTETTGLDPQAGHRIIEIGCVELIDRRLTGNNFHRYLQPDRQIDAGASDVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY---RIT 119
FL +K +F EI ++FL+YV +E+IIHNAAFD+GFLD E++ G++ I +T
Sbjct: 62 AFLADKPRFPEIAESFLDYVKGAELIIHNAAFDLGFLDREIA--GWNAEASRIADLCEVT 119
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR++H G+RNSLDALC RY + HR LHG LLDAE+LA+VYLAMT GQ L+
Sbjct: 120 DTLIMARRMHPGQRNSLDALCKRYGVDHRHRDLHGALLDAEILADVYLAMTGGQVALSLG 179
Query: 180 PKINNSNNIETKIKI-----PNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
+ ++ + + P+ +++ A+ L H L+ I S C+W
Sbjct: 180 EEFATPSHAGSAARPRGRLDPSRPRLRVIQADPVALAAHAERLAAIQAASADGCVW 235
>gi|218557151|ref|YP_002390064.1| DNA polymerase III subunit epsilon [Escherichia coli S88]
gi|218688085|ref|YP_002396297.1| DNA polymerase III subunit epsilon [Escherichia coli ED1a]
gi|218698838|ref|YP_002406467.1| DNA polymerase III subunit epsilon [Escherichia coli IAI39]
gi|218703464|ref|YP_002410983.1| DNA polymerase III subunit epsilon [Escherichia coli UMN026]
gi|293403294|ref|ZP_06647385.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412]
gi|293408304|ref|ZP_06652143.1| DNA polymerase III [Escherichia coli B354]
gi|298378908|ref|ZP_06988789.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302]
gi|386597959|ref|YP_006099465.1| DNA polymerase III subunit epsilon [Escherichia coli IHE3034]
gi|386622623|ref|YP_006142351.1| DNA polymerase III subunit epsilon [Escherichia coli O7:K1 str.
CE10]
gi|417151556|ref|ZP_11991083.1| DNA polymerase III, epsilon subunit [Escherichia coli 1.2264]
gi|417585030|ref|ZP_12235812.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_C165-02]
gi|419937385|ref|ZP_14454289.1| DNA polymerase III subunit epsilon [Escherichia coli 576-1]
gi|419943214|ref|ZP_14459776.1| DNA polymerase III subunit epsilon [Escherichia coli HM605]
gi|422752624|ref|ZP_16806522.1| DNA polymerase III [Escherichia coli H252]
gi|422752887|ref|ZP_16806714.1| DNA polymerase III [Escherichia coli H263]
gi|442606049|ref|ZP_21020853.1| DNA polymerase III epsilon subunit [Escherichia coli Nissle 1917]
gi|218363920|emb|CAR01585.1| DNA polymerase III epsilon subunit [Escherichia coli S88]
gi|218368824|emb|CAR16572.1| DNA polymerase III epsilon subunit [Escherichia coli IAI39]
gi|218425649|emb|CAR06436.1| DNA polymerase III epsilon subunit [Escherichia coli ED1a]
gi|218430561|emb|CAR11427.1| DNA polymerase III epsilon subunit [Escherichia coli UMN026]
gi|221361649|emb|CAX20320.1| DNA polymerase III, epsilon subunit [Escherichia coli]
gi|291429147|gb|EFF02167.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1412]
gi|291471482|gb|EFF13965.1| DNA polymerase III [Escherichia coli B354]
gi|294493054|gb|ADE91810.1| DNA polymerase III, epsilon subunit [Escherichia coli IHE3034]
gi|298280021|gb|EFI21525.1| DNA polymerase III subunit epsilon [Escherichia coli FVEC1302]
gi|323948751|gb|EGB44651.1| DNA polymerase III [Escherichia coli H252]
gi|323958799|gb|EGB54498.1| DNA polymerase III [Escherichia coli H263]
gi|345341880|gb|EGW74279.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_C165-02]
gi|349736361|gb|AEQ11067.1| DNA polymerase III epsilon subunit [Escherichia coli O7:K1 str.
CE10]
gi|386159747|gb|EIH21561.1| DNA polymerase III, epsilon subunit [Escherichia coli 1.2264]
gi|388397994|gb|EIL58947.1| DNA polymerase III subunit epsilon [Escherichia coli 576-1]
gi|388421490|gb|EIL81104.1| DNA polymerase III subunit epsilon [Escherichia coli HM605]
gi|441712900|emb|CCQ06830.1| DNA polymerase III epsilon subunit [Escherichia coli Nissle 1917]
Length = 243
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 242
>gi|408482157|ref|ZP_11188376.1| DNA polymerase III subunit epsilon [Pseudomonas sp. R81]
Length = 248
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 153/240 (63%), Gaps = 13/240 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P RDS++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPDRDSDEGAIGVHGITD 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY--RITD 120
+FLK K +F+E+ D F +++ +++IIHNAAFDVGF++ E +L+G ++ I D
Sbjct: 64 EFLKGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQTDRADISQHCSILD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 124 TLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLAG 183
Query: 181 KINN-SNNIETKIKIPNNI--------PIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
++ S + E P+ I P + A+ +L +H L I K + +W
Sbjct: 184 NASDGSGSAEGSGNRPSEIRRLPADRKPTTIIRASEQDLAEHAARLEAIAKSAGAPALWS 243
>gi|422660644|ref|ZP_16723052.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
lachrymans str. M302278]
gi|331019245|gb|EGH99301.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
lachrymans str. M302278]
Length = 259
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 163/240 (67%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRI+EIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ +I
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHC-KIL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N ++I ++P + P ++ A+ +EL +H + ++ I K + +W
Sbjct: 188 GNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTIAKATGAPALW 247
>gi|422650216|ref|ZP_16713022.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
actinidiae str. M302091]
gi|330963305|gb|EGH63565.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
actinidiae str. M302091]
Length = 259
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 163/240 (67%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRI+EIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ +I
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHC-KIL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N ++I ++P + P ++ A+ +EL +H + ++ I K + +W
Sbjct: 188 GNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPALW 247
>gi|354596500|ref|ZP_09014517.1| DNA polymerase III, epsilon subunit [Brenneria sp. EniD312]
gi|353674435|gb|EHD20468.1| DNA polymerase III, epsilon subunit [Brenneria sp. EniD312]
Length = 245
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 157/238 (65%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG + H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPDRLVDPEAYNVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL ++ ++EI D+FL+++ +E++IHNA FD+GF+D E +L T+ +
Sbjct: 67 GISDEFLADRPTYAEIADDFLDFIRGAELVIHNAMFDIGFMDYEFRMLNREIPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMARKI GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLLMARKIFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLA 186
Query: 178 F------KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + N S +I+ ++ + + + AN EL+ H L I K G C+W+
Sbjct: 187 FSMEGETQRQENESESIQRIVRPASAMKVLYANDEELLAHEKRLDLIAK-KGGSCLWR 243
>gi|170683943|ref|YP_001742338.1| DNA polymerase III subunit epsilon [Escherichia coli SMS-3-5]
gi|331651120|ref|ZP_08352145.1| DNA polymerase III, epsilon subunit [Escherichia coli M718]
gi|331671744|ref|ZP_08372540.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280]
gi|384541782|ref|YP_005725843.1| DNA polymerase III subunit epsilon [Shigella flexneri 2002017]
gi|418042307|ref|ZP_12680507.1| DNA polymerase III, epsilon subunit [Escherichia coli W26]
gi|422808025|ref|ZP_16856453.1| DNA polymerase III [Escherichia fergusonii B253]
gi|422831825|ref|ZP_16879959.1| DNA polymerase III subunit epsilon [Escherichia coli B093]
gi|422835093|ref|ZP_16883151.1| DNA polymerase III subunit epsilon [Escherichia coli E101]
gi|424815121|ref|ZP_18240272.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ECD227]
gi|432479572|ref|ZP_19721537.1| DNA polymerase III subunit epsilon [Escherichia coli KTE210]
gi|170521661|gb|ACB19839.1| DNA polymerase III, epsilon subunit [Escherichia coli SMS-3-5]
gi|281599565|gb|ADA72549.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2002017]
gi|324111223|gb|EGC05206.1| DNA polymerase III [Escherichia fergusonii B253]
gi|325496141|gb|EGC94000.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ECD227]
gi|331050861|gb|EGI22913.1| DNA polymerase III, epsilon subunit [Escherichia coli M718]
gi|331070733|gb|EGI42092.1| DNA polymerase III, epsilon subunit [Escherichia coli TA280]
gi|371613419|gb|EHO01918.1| DNA polymerase III subunit epsilon [Escherichia coli E101]
gi|371616094|gb|EHO04466.1| DNA polymerase III subunit epsilon [Escherichia coli B093]
gi|383474775|gb|EID66754.1| DNA polymerase III, epsilon subunit [Escherichia coli W26]
gi|431010589|gb|ELD24933.1| DNA polymerase III subunit epsilon [Escherichia coli KTE210]
Length = 246
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|213968849|ref|ZP_03396990.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
tomato T1]
gi|301384105|ref|ZP_07232523.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
Max13]
gi|302059179|ref|ZP_07250720.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
K40]
gi|302135017|ref|ZP_07261007.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
NCPPB 1108]
gi|213926452|gb|EEB60006.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
tomato T1]
Length = 259
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 163/240 (67%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRI+EIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ +I
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHC-KIL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N ++I ++P + P ++ A+ +EL +H + ++ I K + +W
Sbjct: 188 GNASDGNGSAEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPALW 247
>gi|28870866|ref|NP_793485.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28854115|gb|AAO57180.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
tomato str. DC3000]
Length = 257
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 163/240 (67%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRI+EIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 7 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 66
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ +I
Sbjct: 67 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHC-KIL 125
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 126 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 185
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N ++I ++P + P ++ A+ +EL +H + ++ I K + +W
Sbjct: 186 GNASDGNGSAEGSGNRGSEIRRLPADRKPCRVIRASESELAEHEVRMTTIAKATGAPALW 245
>gi|386617716|ref|YP_006137296.1| DNA polymerase III subunit epsilon [Escherichia coli NA114]
gi|387828278|ref|YP_003348215.1| DNA polymerase III epsilon subunit [Escherichia coli SE15]
gi|417660843|ref|ZP_12310424.1| DNA polymerase 3 epsilon subunit [Escherichia coli AA86]
gi|281177435|dbj|BAI53765.1| DNA polymerase III epsilon subunit [Escherichia coli SE15]
gi|330910061|gb|EGH38571.1| DNA polymerase 3 epsilon subunit [Escherichia coli AA86]
gi|333968217|gb|AEG35022.1| DNA polymerase III subunit epsilon [Escherichia coli NA114]
Length = 243
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGTCLWR 242
>gi|432892848|ref|ZP_20104953.1| DNA polymerase III subunit epsilon [Escherichia coli KTE165]
gi|431425300|gb|ELH07370.1| DNA polymerase III subunit epsilon [Escherichia coli KTE165]
Length = 246
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGTCLWR 245
>gi|374335176|ref|YP_005091863.1| DNA polymerase III subunit epsilon [Oceanimonas sp. GK1]
gi|372984863|gb|AEY01113.1| DNA polymerase III, epsilon subunit [Oceanimonas sp. GK1]
Length = 244
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 150/237 (63%), Gaps = 10/237 (4%)
Query: 2 HRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N+ G HR+IEIGCVE+ NR++TG +LH Y+ P R ++ A+
Sbjct: 8 QRQVVLDTETTGMNMDSGPHYLGHRVIEIGCVEVVNRRLTGRHLHLYLKPDRKVDEEAIR 67
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY 116
+HG+T FL +K FS VD F++++ +E++ HNA FDVGFLD E+ L+G +
Sbjct: 68 VHGITDDFLADKPVFSTKVDEFIDFIRGAEMVAHNAPFDVGFLDYEMELMGRPERMAELC 127
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITDTL +AR+++ GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 128 KITDTLALARRLYPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTRL 187
Query: 177 NFKPK--INNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
N + + N E + P+++ A EL H L I K G C+W+
Sbjct: 188 NLQTDGGQQSGNGGELRRLAAGRPPLRVIRAQGAELEAHESRLDLIQK-KGGSCLWR 243
>gi|15799891|ref|NP_285903.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
EDL933]
gi|15829465|ref|NP_308238.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
Sakai]
gi|82775601|ref|YP_401948.1| DNA polymerase III subunit epsilon [Shigella dysenteriae Sd197]
gi|168750163|ref|ZP_02775185.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4113]
gi|168757208|ref|ZP_02782215.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4401]
gi|168763423|ref|ZP_02788430.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4501]
gi|168776181|ref|ZP_02801188.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4196]
gi|168782940|ref|ZP_02807947.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4076]
gi|168789658|ref|ZP_02814665.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC869]
gi|168800383|ref|ZP_02825390.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC508]
gi|189403362|ref|ZP_02794985.2| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4486]
gi|208809432|ref|ZP_03251769.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4206]
gi|208813334|ref|ZP_03254663.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4045]
gi|208818379|ref|ZP_03258699.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4042]
gi|209400894|ref|YP_002268818.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
EC4115]
gi|254791342|ref|YP_003076179.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
TW14359]
gi|261223754|ref|ZP_05938035.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
FRIK2000]
gi|261255836|ref|ZP_05948369.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
FRIK966]
gi|291281032|ref|YP_003497850.1| DNA polymerase III epsilon subunit [Escherichia coli O55:H7 str.
CB9615]
gi|293413470|ref|ZP_06656119.1| DNA polymerase III [Escherichia coli B185]
gi|309787110|ref|ZP_07681722.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617]
gi|387505137|ref|YP_006157393.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
RM12579]
gi|387880768|ref|YP_006311070.1| DNA polymerase III subunit epsilon [Escherichia coli Xuzhou21]
gi|416314814|ref|ZP_11659001.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
1044]
gi|416318908|ref|ZP_11661460.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
EC1212]
gi|416328202|ref|ZP_11667992.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
1125]
gi|416801354|ref|ZP_11885523.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. H
2687]
gi|416834537|ref|ZP_11900969.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
LSU-61]
gi|419045014|ref|ZP_13591970.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3A]
gi|419049878|ref|ZP_13596789.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3B]
gi|419059609|ref|ZP_13606408.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3C]
gi|419060418|ref|ZP_13607205.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3D]
gi|419066252|ref|ZP_13612941.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3E]
gi|419072875|ref|ZP_13618454.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3F]
gi|419078836|ref|ZP_13624320.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4A]
gi|419090073|ref|ZP_13635405.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4B]
gi|419091963|ref|ZP_13637264.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4C]
gi|419096119|ref|ZP_13641364.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4D]
gi|419101773|ref|ZP_13646941.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4E]
gi|419107235|ref|ZP_13652345.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4F]
gi|419113033|ref|ZP_13658068.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5A]
gi|419118541|ref|ZP_13663528.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5B]
gi|419124184|ref|ZP_13669093.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5C]
gi|419129779|ref|ZP_13674635.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5D]
gi|419134568|ref|ZP_13679377.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5E]
gi|420267484|ref|ZP_14769894.1| DNA polymerase III, epsilon subunit [Escherichia coli PA22]
gi|420273184|ref|ZP_14775518.1| DNA polymerase III, epsilon subunit [Escherichia coli PA40]
gi|420280342|ref|ZP_14782594.1| DNA polymerase III, epsilon subunit [Escherichia coli TW06591]
gi|420284770|ref|ZP_14786989.1| DNA polymerase III, epsilon subunit [Escherichia coli TW10246]
gi|420290235|ref|ZP_14792403.1| DNA polymerase III, epsilon subunit [Escherichia coli TW11039]
gi|420295955|ref|ZP_14798052.1| DNA polymerase III, epsilon subunit [Escherichia coli TW09109]
gi|420301913|ref|ZP_14803947.1| DNA polymerase III, epsilon subunit [Escherichia coli TW10119]
gi|420307640|ref|ZP_14809614.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1738]
gi|420313118|ref|ZP_14815032.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1734]
gi|421810359|ref|ZP_16246178.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0416]
gi|421816431|ref|ZP_16252003.1| DNA polymerase III, epsilon subunit [Escherichia coli 10.0821]
gi|421821826|ref|ZP_16257270.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK920]
gi|421828578|ref|ZP_16263909.1| DNA polymerase III, epsilon subunit [Escherichia coli PA7]
gi|423652611|ref|ZP_17627981.1| DNA polymerase III, epsilon subunit [Escherichia coli PA31]
gi|424074980|ref|ZP_17812366.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA505]
gi|424081229|ref|ZP_17818130.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA517]
gi|424087905|ref|ZP_17824200.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1996]
gi|424094117|ref|ZP_17829922.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1985]
gi|424107354|ref|ZP_17841969.1| DNA polymerase III, epsilon subunit [Escherichia coli 93-001]
gi|424113328|ref|ZP_17847520.1| DNA polymerase III, epsilon subunit [Escherichia coli PA3]
gi|424119455|ref|ZP_17853208.1| DNA polymerase III, epsilon subunit [Escherichia coli PA5]
gi|424125672|ref|ZP_17858908.1| DNA polymerase III, epsilon subunit [Escherichia coli PA9]
gi|424131680|ref|ZP_17864530.1| DNA polymerase III, epsilon subunit [Escherichia coli PA10]
gi|424138292|ref|ZP_17870628.1| DNA polymerase III, epsilon subunit [Escherichia coli PA14]
gi|424144747|ref|ZP_17876549.1| DNA polymerase III, epsilon subunit [Escherichia coli PA15]
gi|424150893|ref|ZP_17882192.1| DNA polymerase III, epsilon subunit [Escherichia coli PA24]
gi|424181667|ref|ZP_17887608.1| DNA polymerase III, epsilon subunit [Escherichia coli PA25]
gi|424260930|ref|ZP_17893510.1| DNA polymerase III, epsilon subunit [Escherichia coli PA28]
gi|424418212|ref|ZP_17899281.1| DNA polymerase III, epsilon subunit [Escherichia coli PA32]
gi|424453291|ref|ZP_17904872.1| DNA polymerase III, epsilon subunit [Escherichia coli PA33]
gi|424459571|ref|ZP_17910571.1| DNA polymerase III, epsilon subunit [Escherichia coli PA39]
gi|424466029|ref|ZP_17916261.1| DNA polymerase III, epsilon subunit [Escherichia coli PA41]
gi|424472631|ref|ZP_17922337.1| DNA polymerase III, epsilon subunit [Escherichia coli PA42]
gi|424478602|ref|ZP_17927885.1| DNA polymerase III, epsilon subunit [Escherichia coli TW07945]
gi|424484628|ref|ZP_17933540.1| DNA polymerase III, epsilon subunit [Escherichia coli TW09098]
gi|424490725|ref|ZP_17939190.1| DNA polymerase III, epsilon subunit [Escherichia coli TW09195]
gi|424497844|ref|ZP_17945159.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4203]
gi|424504088|ref|ZP_17950907.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4196]
gi|424516692|ref|ZP_17961263.1| DNA polymerase III, epsilon subunit [Escherichia coli TW14313]
gi|424517912|ref|ZP_17962380.1| DNA polymerase III, epsilon subunit [Escherichia coli TW14301]
gi|424523738|ref|ZP_17967799.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4421]
gi|424529946|ref|ZP_17973608.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4422]
gi|424535917|ref|ZP_17979218.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4013]
gi|424541805|ref|ZP_17984682.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4402]
gi|424548129|ref|ZP_17990384.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4439]
gi|424554417|ref|ZP_17996179.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4436]
gi|424560762|ref|ZP_18002082.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4437]
gi|424566773|ref|ZP_18007733.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4448]
gi|424572972|ref|ZP_18013437.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1845]
gi|424578950|ref|ZP_18018918.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1863]
gi|425095615|ref|ZP_18498667.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.4870]
gi|425101697|ref|ZP_18504379.1| DNA polymerase III, epsilon subunit [Escherichia coli 5.2239]
gi|425107557|ref|ZP_18509835.1| DNA polymerase III, epsilon subunit [Escherichia coli 6.0172]
gi|425123368|ref|ZP_18524976.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0586]
gi|425129394|ref|ZP_18530529.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.2524]
gi|425135735|ref|ZP_18536498.1| DNA polymerase III, epsilon subunit [Escherichia coli 10.0833]
gi|425141680|ref|ZP_18542006.1| DNA polymerase III, epsilon subunit [Escherichia coli 10.0869]
gi|425147958|ref|ZP_18547889.1| DNA polymerase III, epsilon subunit [Escherichia coli 88.0221]
gi|425153572|ref|ZP_18553153.1| DNA polymerase III, epsilon subunit [Escherichia coli PA34]
gi|425160035|ref|ZP_18559238.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA506]
gi|425165551|ref|ZP_18564386.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA507]
gi|425171837|ref|ZP_18570266.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA504]
gi|425177634|ref|ZP_18575716.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1999]
gi|425183862|ref|ZP_18581516.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1997]
gi|425190592|ref|ZP_18587746.1| DNA polymerase III, epsilon subunit [Escherichia coli NE1487]
gi|425196894|ref|ZP_18593579.1| DNA polymerase III, epsilon subunit [Escherichia coli NE037]
gi|425203588|ref|ZP_18599743.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK2001]
gi|425209363|ref|ZP_18605129.1| DNA polymerase III, epsilon subunit [Escherichia coli PA4]
gi|425215404|ref|ZP_18610750.1| DNA polymerase III, epsilon subunit [Escherichia coli PA23]
gi|425221971|ref|ZP_18616857.1| DNA polymerase III, epsilon subunit [Escherichia coli PA49]
gi|425228222|ref|ZP_18622646.1| DNA polymerase III, epsilon subunit [Escherichia coli PA45]
gi|425234522|ref|ZP_18628507.1| DNA polymerase III, epsilon subunit [Escherichia coli TT12B]
gi|425240493|ref|ZP_18634157.1| DNA polymerase III, epsilon subunit [Escherichia coli MA6]
gi|425246574|ref|ZP_18639806.1| DNA polymerase III, epsilon subunit [Escherichia coli 5905]
gi|425252363|ref|ZP_18645277.1| DNA polymerase III, epsilon subunit [Escherichia coli CB7326]
gi|425258699|ref|ZP_18651097.1| DNA polymerase III, epsilon subunit [Escherichia coli EC96038]
gi|425264814|ref|ZP_18656764.1| DNA polymerase III, epsilon subunit [Escherichia coli 5412]
gi|425292196|ref|ZP_18682828.1| DNA polymerase III, epsilon subunit [Escherichia coli PA38]
gi|425308976|ref|ZP_18698481.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1735]
gi|425314903|ref|ZP_18704015.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1736]
gi|425320980|ref|ZP_18709693.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1737]
gi|425327139|ref|ZP_18715405.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1846]
gi|425333329|ref|ZP_18721091.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1847]
gi|425339749|ref|ZP_18727023.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1848]
gi|425345624|ref|ZP_18732466.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1849]
gi|425351842|ref|ZP_18738257.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1850]
gi|425357829|ref|ZP_18743834.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1856]
gi|425363940|ref|ZP_18749536.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1862]
gi|425370376|ref|ZP_18755376.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1864]
gi|425383166|ref|ZP_18767079.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1866]
gi|425389872|ref|ZP_18773361.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1868]
gi|425395995|ref|ZP_18779069.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1869]
gi|425401963|ref|ZP_18784603.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1870]
gi|425408528|ref|ZP_18790710.1| DNA polymerase III, epsilon subunit [Escherichia coli NE098]
gi|425414798|ref|ZP_18796461.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK523]
gi|425425945|ref|ZP_18807024.1| DNA polymerase III, epsilon subunit [Escherichia coli 0.1304]
gi|428944574|ref|ZP_19017261.1| DNA polymerase III, epsilon subunit [Escherichia coli 88.1467]
gi|428950750|ref|ZP_19022925.1| DNA polymerase III, epsilon subunit [Escherichia coli 88.1042]
gi|428956597|ref|ZP_19028339.1| DNA polymerase III, epsilon subunit [Escherichia coli 89.0511]
gi|428962965|ref|ZP_19034179.1| DNA polymerase III, epsilon subunit [Escherichia coli 90.0091]
gi|428969020|ref|ZP_19039682.1| DNA polymerase III, epsilon subunit [Escherichia coli 90.0039]
gi|428975566|ref|ZP_19045770.1| DNA polymerase III, epsilon subunit [Escherichia coli 90.2281]
gi|428981261|ref|ZP_19051026.1| DNA polymerase III, epsilon subunit [Escherichia coli 93.0055]
gi|428987552|ref|ZP_19056873.1| DNA polymerase III, epsilon subunit [Escherichia coli 93.0056]
gi|428993363|ref|ZP_19062301.1| DNA polymerase III, epsilon subunit [Escherichia coli 94.0618]
gi|428999451|ref|ZP_19067995.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.0183]
gi|429010715|ref|ZP_19078101.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.1288]
gi|429012056|ref|ZP_19079337.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.0943]
gi|429018304|ref|ZP_19085114.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0428]
gi|429023935|ref|ZP_19090380.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0427]
gi|429030236|ref|ZP_19096140.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0939]
gi|429036392|ref|ZP_19101865.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0932]
gi|429042415|ref|ZP_19107447.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0107]
gi|429048190|ref|ZP_19112857.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0003]
gi|429053547|ref|ZP_19118061.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.1742]
gi|429059254|ref|ZP_19123423.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0007]
gi|429064638|ref|ZP_19128533.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0672]
gi|429071254|ref|ZP_19134621.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0678]
gi|429076484|ref|ZP_19139713.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0713]
gi|429823702|ref|ZP_19355253.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0109]
gi|429830075|ref|ZP_19360984.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0010]
gi|444922417|ref|ZP_21242175.1| DNA polymerase III, epsilon subunit [Escherichia coli 09BKT078844]
gi|444928728|ref|ZP_21247899.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0814]
gi|444934133|ref|ZP_21253095.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0815]
gi|444939703|ref|ZP_21258371.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0816]
gi|444945267|ref|ZP_21263704.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0839]
gi|444950818|ref|ZP_21269061.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0848]
gi|444956295|ref|ZP_21274316.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1753]
gi|444961633|ref|ZP_21279404.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1775]
gi|444967358|ref|ZP_21284842.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1793]
gi|444972860|ref|ZP_21290163.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1805]
gi|444978368|ref|ZP_21295375.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 700728]
gi|444983691|ref|ZP_21300566.1| DNA polymerase III, epsilon subunit [Escherichia coli PA11]
gi|444988641|ref|ZP_21305394.1| DNA polymerase III, epsilon subunit [Escherichia coli PA19]
gi|444994245|ref|ZP_21310855.1| DNA polymerase III, epsilon subunit [Escherichia coli PA13]
gi|444999768|ref|ZP_21316241.1| DNA polymerase III, epsilon subunit [Escherichia coli PA2]
gi|445005223|ref|ZP_21321576.1| DNA polymerase III, epsilon subunit [Escherichia coli PA47]
gi|445010402|ref|ZP_21326607.1| DNA polymerase III, epsilon subunit [Escherichia coli PA48]
gi|445016164|ref|ZP_21332224.1| DNA polymerase III, epsilon subunit [Escherichia coli PA8]
gi|445021636|ref|ZP_21337569.1| DNA polymerase III, epsilon subunit [Escherichia coli 7.1982]
gi|445026880|ref|ZP_21342668.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1781]
gi|445032352|ref|ZP_21347989.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1762]
gi|445038050|ref|ZP_21353532.1| DNA polymerase III, epsilon subunit [Escherichia coli PA35]
gi|445043220|ref|ZP_21358568.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.4880]
gi|445048868|ref|ZP_21364050.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.0083]
gi|445054492|ref|ZP_21369453.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0670]
gi|12512943|gb|AAG54511.1|AE005196_9 DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EDL933]
gi|13359667|dbj|BAB33634.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
Sakai]
gi|81239749|gb|ABB60459.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae Sd197]
gi|187768434|gb|EDU32278.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4196]
gi|188015573|gb|EDU53695.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4113]
gi|188999632|gb|EDU68618.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4076]
gi|189355702|gb|EDU74121.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4401]
gi|189361034|gb|EDU79453.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4486]
gi|189366358|gb|EDU84774.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4501]
gi|189370736|gb|EDU89152.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC869]
gi|189377309|gb|EDU95725.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC508]
gi|208729233|gb|EDZ78834.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4206]
gi|208734611|gb|EDZ83298.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4045]
gi|208738502|gb|EDZ86184.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4042]
gi|209162294|gb|ACI39727.1| DNA polymerase III, epsilon subunit [Escherichia coli O157:H7 str.
EC4115]
gi|209745474|gb|ACI71044.1| DNA polymerase III epsilon subunit [Escherichia coli]
gi|209745476|gb|ACI71045.1| DNA polymerase III epsilon subunit [Escherichia coli]
gi|209745478|gb|ACI71046.1| DNA polymerase III epsilon subunit [Escherichia coli]
gi|209745480|gb|ACI71047.1| DNA polymerase III epsilon subunit [Escherichia coli]
gi|209745482|gb|ACI71048.1| DNA polymerase III epsilon subunit [Escherichia coli]
gi|254590742|gb|ACT70103.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
TW14359]
gi|290760905|gb|ADD54866.1| DNA polymerase III, epsilon subunit [Escherichia coli O55:H7 str.
CB9615]
gi|291433528|gb|EFF06501.1| DNA polymerase III [Escherichia coli B185]
gi|308924688|gb|EFP70183.1| DNA polymerase III, epsilon subunit [Shigella dysenteriae 1617]
gi|320190264|gb|EFW64914.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
EC1212]
gi|320650355|gb|EFX18832.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H- str. H
2687]
gi|320665449|gb|EFX32511.1| DNA polymerase III subunit epsilon [Escherichia coli O157:H7 str.
LSU-61]
gi|326338809|gb|EGD62628.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
1044]
gi|326342399|gb|EGD66179.1| DNA polymerase III epsilon subunit [Escherichia coli O157:H7 str.
1125]
gi|374357131|gb|AEZ38838.1| DNA polymerase III subunit epsilon [Escherichia coli O55:H7 str.
RM12579]
gi|377897030|gb|EHU61418.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3A]
gi|377900302|gb|EHU64635.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3B]
gi|377902238|gb|EHU66544.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3C]
gi|377919478|gb|EHU83520.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3D]
gi|377921191|gb|EHU85194.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3E]
gi|377923078|gb|EHU87047.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4B]
gi|377934140|gb|EHU97977.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4A]
gi|377934223|gb|EHU98057.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC3F]
gi|377946047|gb|EHV09736.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4C]
gi|377951747|gb|EHV15361.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4D]
gi|377955852|gb|EHV19405.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4E]
gi|377965824|gb|EHV29237.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5A]
gi|377967106|gb|EHV30512.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC4F]
gi|377973871|gb|EHV37201.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5B]
gi|377982090|gb|EHV45343.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5D]
gi|377983179|gb|EHV46424.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5C]
gi|377988291|gb|EHV51469.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC5E]
gi|386794226|gb|AFJ27260.1| DNA polymerase III subunit epsilon [Escherichia coli Xuzhou21]
gi|390651390|gb|EIN29686.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1996]
gi|390653968|gb|EIN32043.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA517]
gi|390654050|gb|EIN32113.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA505]
gi|390670749|gb|EIN47260.1| DNA polymerase III, epsilon subunit [Escherichia coli 93-001]
gi|390675719|gb|EIN51844.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1985]
gi|390689640|gb|EIN64567.1| DNA polymerase III, epsilon subunit [Escherichia coli PA3]
gi|390693234|gb|EIN67871.1| DNA polymerase III, epsilon subunit [Escherichia coli PA9]
gi|390694451|gb|EIN69024.1| DNA polymerase III, epsilon subunit [Escherichia coli PA5]
gi|390709411|gb|EIN82512.1| DNA polymerase III, epsilon subunit [Escherichia coli PA10]
gi|390711552|gb|EIN84524.1| DNA polymerase III, epsilon subunit [Escherichia coli PA15]
gi|390714632|gb|EIN87518.1| DNA polymerase III, epsilon subunit [Escherichia coli PA14]
gi|390720895|gb|EIN93597.1| DNA polymerase III, epsilon subunit [Escherichia coli PA22]
gi|390734655|gb|EIO06145.1| DNA polymerase III, epsilon subunit [Escherichia coli PA25]
gi|390734757|gb|EIO06213.1| DNA polymerase III, epsilon subunit [Escherichia coli PA24]
gi|390737980|gb|EIO09217.1| DNA polymerase III, epsilon subunit [Escherichia coli PA28]
gi|390753134|gb|EIO22884.1| DNA polymerase III, epsilon subunit [Escherichia coli PA31]
gi|390753459|gb|EIO23166.1| DNA polymerase III, epsilon subunit [Escherichia coli PA32]
gi|390757458|gb|EIO26939.1| DNA polymerase III, epsilon subunit [Escherichia coli PA33]
gi|390762769|gb|EIO32024.1| DNA polymerase III, epsilon subunit [Escherichia coli PA40]
gi|390777080|gb|EIO44941.1| DNA polymerase III, epsilon subunit [Escherichia coli PA41]
gi|390779915|gb|EIO47626.1| DNA polymerase III, epsilon subunit [Escherichia coli PA42]
gi|390783154|gb|EIO50765.1| DNA polymerase III, epsilon subunit [Escherichia coli TW06591]
gi|390787526|gb|EIO55009.1| DNA polymerase III, epsilon subunit [Escherichia coli PA39]
gi|390795720|gb|EIO63002.1| DNA polymerase III, epsilon subunit [Escherichia coli TW10246]
gi|390802373|gb|EIO69410.1| DNA polymerase III, epsilon subunit [Escherichia coli TW11039]
gi|390811647|gb|EIO78346.1| DNA polymerase III, epsilon subunit [Escherichia coli TW07945]
gi|390811727|gb|EIO78412.1| DNA polymerase III, epsilon subunit [Escherichia coli TW09109]
gi|390819805|gb|EIO86130.1| DNA polymerase III, epsilon subunit [Escherichia coli TW10119]
gi|390824558|gb|EIO90527.1| DNA polymerase III, epsilon subunit [Escherichia coli TW09098]
gi|390837796|gb|EIP02140.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4203]
gi|390840779|gb|EIP04779.1| DNA polymerase III, epsilon subunit [Escherichia coli TW14313]
gi|390840896|gb|EIP04884.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4196]
gi|390844651|gb|EIP08357.1| DNA polymerase III, epsilon subunit [Escherichia coli TW09195]
gi|390856426|gb|EIP19022.1| DNA polymerase III, epsilon subunit [Escherichia coli TW14301]
gi|390861280|gb|EIP23544.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4421]
gi|390872339|gb|EIP33654.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4422]
gi|390877530|gb|EIP38450.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4013]
gi|390887037|gb|EIP47040.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4402]
gi|390888749|gb|EIP48556.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4439]
gi|390895903|gb|EIP55311.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4436]
gi|390903866|gb|EIP62882.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1738]
gi|390912116|gb|EIP70795.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4437]
gi|390912295|gb|EIP70950.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1734]
gi|390916866|gb|EIP75301.1| DNA polymerase III, epsilon subunit [Escherichia coli EC4448]
gi|390925430|gb|EIP83117.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1863]
gi|390926554|gb|EIP84119.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1845]
gi|408072778|gb|EKH07095.1| DNA polymerase III, epsilon subunit [Escherichia coli PA7]
gi|408077106|gb|EKH11319.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK920]
gi|408087075|gb|EKH20547.1| DNA polymerase III, epsilon subunit [Escherichia coli PA34]
gi|408091590|gb|EKH24812.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA506]
gi|408097127|gb|EKH30029.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA507]
gi|408103537|gb|EKH35881.1| DNA polymerase III, epsilon subunit [Escherichia coli FDA504]
gi|408111136|gb|EKH42906.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1999]
gi|408117241|gb|EKH48447.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1997]
gi|408122736|gb|EKH53553.1| DNA polymerase III, epsilon subunit [Escherichia coli NE1487]
gi|408130925|gb|EKH60990.1| DNA polymerase III, epsilon subunit [Escherichia coli NE037]
gi|408132838|gb|EKH62777.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK2001]
gi|408142019|gb|EKH71425.1| DNA polymerase III, epsilon subunit [Escherichia coli PA4]
gi|408150813|gb|EKH79351.1| DNA polymerase III, epsilon subunit [Escherichia coli PA23]
gi|408154354|gb|EKH82706.1| DNA polymerase III, epsilon subunit [Escherichia coli PA49]
gi|408159319|gb|EKH87392.1| DNA polymerase III, epsilon subunit [Escherichia coli PA45]
gi|408167769|gb|EKH95251.1| DNA polymerase III, epsilon subunit [Escherichia coli TT12B]
gi|408173431|gb|EKI00452.1| DNA polymerase III, epsilon subunit [Escherichia coli MA6]
gi|408175403|gb|EKI02321.1| DNA polymerase III, epsilon subunit [Escherichia coli 5905]
gi|408187808|gb|EKI13717.1| DNA polymerase III, epsilon subunit [Escherichia coli CB7326]
gi|408193394|gb|EKI18931.1| DNA polymerase III, epsilon subunit [Escherichia coli 5412]
gi|408193809|gb|EKI19326.1| DNA polymerase III, epsilon subunit [Escherichia coli EC96038]
gi|408234211|gb|EKI57239.1| DNA polymerase III, epsilon subunit [Escherichia coli PA38]
gi|408240675|gb|EKI63342.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1735]
gi|408250148|gb|EKI72026.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1736]
gi|408254499|gb|EKI76017.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1737]
gi|408260769|gb|EKI81835.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1846]
gi|408269283|gb|EKI89547.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1847]
gi|408271131|gb|EKI91274.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1848]
gi|408280216|gb|EKI99787.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1849]
gi|408286124|gb|EKJ05074.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1850]
gi|408288992|gb|EKJ07776.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1856]
gi|408301653|gb|EKJ19230.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1862]
gi|408301691|gb|EKJ19255.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1864]
gi|408319365|gb|EKJ35506.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1868]
gi|408319554|gb|EKJ35688.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1866]
gi|408332297|gb|EKJ47350.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1869]
gi|408337895|gb|EKJ52577.1| DNA polymerase III, epsilon subunit [Escherichia coli NE098]
gi|408339500|gb|EKJ54075.1| DNA polymerase III, epsilon subunit [Escherichia coli EC1870]
gi|408351044|gb|EKJ64854.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK523]
gi|408353503|gb|EKJ67004.1| DNA polymerase III, epsilon subunit [Escherichia coli 0.1304]
gi|408560148|gb|EKK36428.1| DNA polymerase III, epsilon subunit [Escherichia coli 5.2239]
gi|408560190|gb|EKK36457.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.4870]
gi|408561339|gb|EKK37559.1| DNA polymerase III, epsilon subunit [Escherichia coli 6.0172]
gi|408585948|gb|EKK60755.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0586]
gi|408591867|gb|EKK66284.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.2524]
gi|408593253|gb|EKK67579.1| DNA polymerase III, epsilon subunit [Escherichia coli 10.0833]
gi|408605366|gb|EKK78880.1| DNA polymerase III, epsilon subunit [Escherichia coli 10.0869]
gi|408606200|gb|EKK79655.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0416]
gi|408613320|gb|EKK86626.1| DNA polymerase III, epsilon subunit [Escherichia coli 88.0221]
gi|408617965|gb|EKK91060.1| DNA polymerase III, epsilon subunit [Escherichia coli 10.0821]
gi|427215369|gb|EKV84553.1| DNA polymerase III, epsilon subunit [Escherichia coli 88.1042]
gi|427218817|gb|EKV87802.1| DNA polymerase III, epsilon subunit [Escherichia coli 89.0511]
gi|427218990|gb|EKV87965.1| DNA polymerase III, epsilon subunit [Escherichia coli 88.1467]
gi|427235080|gb|EKW02725.1| DNA polymerase III, epsilon subunit [Escherichia coli 90.2281]
gi|427235175|gb|EKW02813.1| DNA polymerase III, epsilon subunit [Escherichia coli 90.0039]
gi|427237466|gb|EKW05004.1| DNA polymerase III, epsilon subunit [Escherichia coli 90.0091]
gi|427252168|gb|EKW18672.1| DNA polymerase III, epsilon subunit [Escherichia coli 93.0056]
gi|427253828|gb|EKW20216.1| DNA polymerase III, epsilon subunit [Escherichia coli 93.0055]
gi|427254786|gb|EKW21081.1| DNA polymerase III, epsilon subunit [Escherichia coli 94.0618]
gi|427258229|gb|EKW24325.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.1288]
gi|427271400|gb|EKW36218.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.0943]
gi|427271965|gb|EKW36738.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.0183]
gi|427287200|gb|EKW50988.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0428]
gi|427293101|gb|EKW56377.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0427]
gi|427294669|gb|EKW57840.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0939]
gi|427305236|gb|EKW67835.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0003]
gi|427307545|gb|EKW69987.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0932]
gi|427311905|gb|EKW74077.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0107]
gi|427322723|gb|EKW84349.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.1742]
gi|427323374|gb|EKW84950.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0007]
gi|427335136|gb|EKW96175.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0713]
gi|427335176|gb|EKW96212.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0678]
gi|427337190|gb|EKW98113.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0672]
gi|429260672|gb|EKY44209.1| DNA polymerase III, epsilon subunit [Escherichia coli 96.0109]
gi|429262243|gb|EKY45593.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0010]
gi|444543303|gb|ELV22578.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0814]
gi|444551882|gb|ELV29756.1| DNA polymerase III, epsilon subunit [Escherichia coli 09BKT078844]
gi|444552541|gb|ELV30338.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0815]
gi|444565955|gb|ELV42796.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0839]
gi|444568228|gb|ELV44916.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0816]
gi|444572799|gb|ELV49210.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0848]
gi|444583537|gb|ELV59248.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1753]
gi|444586396|gb|ELV61904.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1775]
gi|444586766|gb|ELV62251.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1793]
gi|444600796|gb|ELV75616.1| DNA polymerase III, epsilon subunit [Escherichia coli ATCC 700728]
gi|444600870|gb|ELV75684.1| DNA polymerase III, epsilon subunit [Escherichia coli PA11]
gi|444609909|gb|ELV84351.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1805]
gi|444616079|gb|ELV90252.1| DNA polymerase III, epsilon subunit [Escherichia coli PA13]
gi|444616739|gb|ELV90892.1| DNA polymerase III, epsilon subunit [Escherichia coli PA19]
gi|444624403|gb|ELV98288.1| DNA polymerase III, epsilon subunit [Escherichia coli PA2]
gi|444633572|gb|ELW07085.1| DNA polymerase III, epsilon subunit [Escherichia coli PA48]
gi|444633838|gb|ELW07336.1| DNA polymerase III, epsilon subunit [Escherichia coli PA47]
gi|444638710|gb|ELW12038.1| DNA polymerase III, epsilon subunit [Escherichia coli PA8]
gi|444648759|gb|ELW21675.1| DNA polymerase III, epsilon subunit [Escherichia coli 7.1982]
gi|444650906|gb|ELW23720.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1781]
gi|444654914|gb|ELW27544.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.1762]
gi|444664003|gb|ELW36206.1| DNA polymerase III, epsilon subunit [Escherichia coli PA35]
gi|444668619|gb|ELW40629.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.4880]
gi|444673403|gb|ELW45041.1| DNA polymerase III, epsilon subunit [Escherichia coli 95.0083]
gi|444674834|gb|ELW46331.1| DNA polymerase III, epsilon subunit [Escherichia coli 99.0670]
Length = 243
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRLVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 242
>gi|422645872|ref|ZP_16709007.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330959421|gb|EGH59681.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 259
Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 160/241 (66%), Gaps = 15/241 (6%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
HR +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 8 HRAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGIT 67
Query: 62 TKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRI 118
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 68 NEFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGAQDKADITRHCS-I 126
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LAEVYLAMT GQ++L+
Sbjct: 127 LDTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILAEVYLAMTGGQTSLSL 186
Query: 179 KPKINNSNNIETKI--------KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCI 227
++ N ++P + +P ++ A+ +EL +H + ++ I K S +
Sbjct: 187 AGNASDGNGSGEGGSSRGSEIRRLPADRLPCRVIRASESELAEHEVRMNTIAKASGAPAL 246
Query: 228 W 228
W
Sbjct: 247 W 247
>gi|398842951|ref|ZP_10600118.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM102]
gi|398907011|ref|ZP_10653727.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM50]
gi|398104733|gb|EJL94859.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM102]
gi|398172177|gb|EJM60052.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM50]
Length = 252
Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 161/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G+ ++ T++ I
Sbjct: 64 EFLVGKPRFTEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGHHDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ +L QH L I K + +W
Sbjct: 183 GNASDGNGSGEGADNSATEIRRLPADRQPARIIRASEEDLAQHVARLEAIAKSAGAPSLW 242
Query: 229 KK 230
++
Sbjct: 243 QQ 244
>gi|398867190|ref|ZP_10622657.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM78]
gi|398237788|gb|EJN23532.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM78]
Length = 252
Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 106/240 (44%), Positives = 159/240 (66%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ + F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVAEEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A +EL QH L I K + G +W
Sbjct: 183 GNASDGNGSGEGADNSATEIRRLPADRQPARIIRATEDELAQHMARLEIISKSAGGPALW 242
>gi|292487330|ref|YP_003530202.1| DNA polymerase III subunit epsilon [Erwinia amylovora CFBP1430]
gi|292898576|ref|YP_003537945.1| DNA polymerase III subunit epsilon [Erwinia amylovora ATCC 49946]
gi|428784264|ref|ZP_19001755.1| DNA polymerase III epsilon subunit [Erwinia amylovora ACW56400]
gi|291198424|emb|CBJ45532.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC 49946]
gi|291552749|emb|CBA19794.1| DNA polymerase III epsilon subunit [Erwinia amylovora CFBP1430]
gi|312171436|emb|CBX79694.1| DNA polymerase III epsilon subunit [Erwinia amylovora ATCC
BAA-2158]
gi|426275826|gb|EKV53553.1| DNA polymerase III epsilon subunit [Erwinia amylovora ACW56400]
Length = 249
Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 156/238 (65%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 8 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLIDPEAFGVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G+ +FL +K F++I D+FL Y++ +E++IHNA+FD+GF+D E + L G + T+
Sbjct: 68 GIADEFLLDKPTFAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAK-TETFC 126
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITD+L MARK+ GKRNSLDALC RY I RTLHG LLD+E+LAEV+L MT GQ++L
Sbjct: 127 KITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFLTMTGGQTSL 186
Query: 177 NF-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + K + I+ + + + + A+ EL+ H L ++K G C+W+
Sbjct: 187 AFSMEGEREKQQDGETIQRIARPASGLRVVRASEQELMAHEARLDLVEK-KGGSCLWR 243
>gi|30061767|ref|NP_835938.1| DNA polymerase III subunit epsilon [Shigella flexneri 2a str.
2457T]
gi|56479626|ref|NP_706156.2| DNA polymerase III subunit epsilon [Shigella flexneri 2a str. 301]
gi|218547665|ref|YP_002381456.1| DNA polymerase III subunit epsilon [Escherichia fergusonii ATCC
35469]
gi|415859650|ref|ZP_11533849.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
2457T]
gi|417136643|ref|ZP_11980671.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0259]
gi|417306744|ref|ZP_12093629.1| DNA polymerase III subunit epsilon [Escherichia coli PCN033]
gi|417705720|ref|ZP_12354792.1| DNA polymerase III, epsilon subunit [Shigella flexneri VA-6]
gi|417710851|ref|ZP_12359858.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-272]
gi|417715518|ref|ZP_12364454.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-227]
gi|417721200|ref|ZP_12370053.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-304]
gi|417726561|ref|ZP_12375310.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-671]
gi|417735342|ref|ZP_12383988.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2747-71]
gi|417737053|ref|ZP_12385665.1| DNA polymerase III, epsilon subunit [Shigella flexneri 4343-70]
gi|417741698|ref|ZP_12390253.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2930-71]
gi|417826295|ref|ZP_12472875.1| DNA polymerase III, epsilon subunit [Shigella flexneri J1713]
gi|418253003|ref|ZP_12878376.1| DNA polymerase III, epsilon subunit [Shigella flexneri 6603-63]
gi|420318689|ref|ZP_14820548.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2850-71]
gi|420329335|ref|ZP_14831051.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-1770]
gi|420339687|ref|ZP_14841223.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-404]
gi|420369810|ref|ZP_14870473.1| DNA polymerase III, epsilon subunit [Shigella flexneri 1235-66]
gi|450185276|ref|ZP_21888993.1| DNA polymerase III subunit epsilon [Escherichia coli SEPT362]
gi|30040009|gb|AAP15743.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
2457T]
gi|56383177|gb|AAN41863.2| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str. 301]
gi|218355206|emb|CAQ87813.1| DNA polymerase III epsilon subunit [Escherichia fergusonii ATCC
35469]
gi|313646728|gb|EFS11187.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2a str.
2457T]
gi|332754119|gb|EGJ84489.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2747-71]
gi|332761998|gb|EGJ92270.1| DNA polymerase III, epsilon subunit [Shigella flexneri 4343-70]
gi|332764639|gb|EGJ94869.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-671]
gi|332768614|gb|EGJ98795.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2930-71]
gi|333009688|gb|EGK29138.1| DNA polymerase III, epsilon subunit [Shigella flexneri VA-6]
gi|333010755|gb|EGK30181.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-272]
gi|333021254|gb|EGK40507.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-227]
gi|333022178|gb|EGK41418.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-304]
gi|335578209|gb|EGM63434.1| DNA polymerase III, epsilon subunit [Shigella flexneri J1713]
gi|338771681|gb|EGP26416.1| DNA polymerase III subunit epsilon [Escherichia coli PCN033]
gi|386159504|gb|EIH15830.1| DNA polymerase III, epsilon subunit [Escherichia coli 97.0259]
gi|391255043|gb|EIQ14196.1| DNA polymerase III, epsilon subunit [Shigella flexneri 2850-71]
gi|391260810|gb|EIQ19863.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-1770]
gi|391275106|gb|EIQ33902.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-404]
gi|391320887|gb|EIQ77672.1| DNA polymerase III, epsilon subunit [Shigella flexneri 1235-66]
gi|397901913|gb|EJL18252.1| DNA polymerase III, epsilon subunit [Shigella flexneri 6603-63]
gi|449325249|gb|EMD15161.1| DNA polymerase III subunit epsilon [Escherichia coli SEPT362]
Length = 243
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 242
>gi|378768434|ref|YP_005196907.1| DNA polymerase III subunit epsilon [Pantoea ananatis LMG 5342]
gi|386080556|ref|YP_005994081.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis PA13]
gi|354989737|gb|AER33861.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis PA13]
gi|365187920|emb|CCF10870.1| DNA polymerase III, epsilon subunit [Pantoea ananatis LMG 5342]
Length = 243
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 152/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K FS+I D FL+Y+ +E++IHNA+FD+GF+D E L T+ +
Sbjct: 67 GIADEFLLDKPTFSDIADEFLDYIRGAELVIHNASFDIGFMDYEFGKLQRGIEKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MAR++ GKRNSLDALC RY I RTLHG LLDAE+LAEV+L MT GQ++L+
Sbjct: 127 ITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVFLTMTGGQTSLS 186
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + S I+ + + + + A+ E+ QH L I K G C+W+
Sbjct: 187 FSSEEERARQQQSEGIQRIARPSSGLRVVTASDEEVNQHESRLDLIMK-KGGSCLWR 242
>gi|422591355|ref|ZP_16666000.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
morsprunorum str. M302280]
gi|330878790|gb|EGH12939.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
morsprunorum str. M302280]
Length = 259
Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 163/240 (67%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRI+EIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ +I
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALIGAQDKADITRHC-KIL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N ++I ++P + P ++ A+ +EL +H + ++ I K + +W
Sbjct: 188 GNASDGNGSAEGSSNRGSEIRRLPADRKPCRIIRASESELAEHEVRMTTIAKATGAPALW 247
>gi|419917101|ref|ZP_14435376.1| DNA polymerase III subunit epsilon [Escherichia coli KD2]
gi|388394814|gb|EIL56068.1| DNA polymerase III subunit epsilon [Escherichia coli KD2]
Length = 246
Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +AR++ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARRMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|192359256|ref|YP_001982513.1| DNA polymerase III subunit epsilon [Cellvibrio japonicus Ueda107]
gi|190685421|gb|ACE83099.1| DNA polymerase III, epsilon subunit [Cellvibrio japonicus Ueda107]
Length = 237
Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 155/236 (65%), Gaps = 9/236 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRIIEIGCVE+ NR++TG + H YINP R+ + A A+HG++
Sbjct: 2 RQIVLDTETTGLEYSQGHRIIEIGCVELMNRRLTGRHYHQYINPEREVDAGAFAVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
L +K F+ IVD+FLN+V ++E+IIHNAAFD+GF+D EL++L G+ + K + D
Sbjct: 62 AMLNDKPVFARIVDDFLNFVGDAELIIHNAAFDIGFIDHELNMLRPGFGSI-KGRCGVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-- 178
TLL+AR H G++N+LDALC RY + R LHG LLDAE+LA+VYLAMT GQ++L+
Sbjct: 121 TLLLARNKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLAMTGGQTSLSLGG 180
Query: 179 -KPKINNSNNIETKIKIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K N E ++ + P + A++ EL H L+ I + S C+W K
Sbjct: 181 NQAKAEGGGNQEGIRRLSSQRPALRVISASAEELQAHEEKLAAIARSSGDNCLWLK 236
>gi|429119810|ref|ZP_19180514.1| DNA polymerase III epsilon subunit [Cronobacter sakazakii 680]
gi|426325725|emb|CCK11251.1| DNA polymerase III epsilon subunit [Cronobacter sakazakii 680]
Length = 243
Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFMVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL NK F ++VD+FL+Y+ +E++IHNA+FD+GF+D E +L S T+ +
Sbjct: 67 GISDEFLMNKPVFGDVVDDFLDYIRGAELVIHNASFDIGFMDYEFGMLNRSIPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 127 ITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQTSIA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGDGQQQQGDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQK-KGGSCLWR 242
>gi|53805082|ref|YP_113230.1| DNA polymerase III subunit epsilon [Methylococcus capsulatus str.
Bath]
gi|53758843|gb|AAU93134.1| DNA polymerase III, epsilon subunit [Methylococcus capsulatus str.
Bath]
Length = 267
Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 119/266 (44%), Positives = 153/266 (57%), Gaps = 38/266 (14%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ GHRIIEIGCVE+ +R+IT N H YINP R+ + A+ +HGLT
Sbjct: 2 RQIVLDTETTGLDPKAGHRIIEIGCVELLDRRITQNRFHVYINPEREIDAGAIEVHGLTN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RITDT 121
+FL F I D+FLN++S +E+IIHNAAFDVGFLD ELSLLG + Y I DT
Sbjct: 62 EFLAGMPVFRNIADDFLNFISGAELIIHNAAFDVGFLDHELSLLGENRGRIADYCGICDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-------- 173
L MARK H G+RNSLDALC RYN+ R LHG LLDAE+LA+VYLAMT GQ
Sbjct: 122 LAMARKNHPGQRNSLDALCKRYNVDNSRRELHGALLDAEILADVYLAMTGGQITMLLEAD 181
Query: 174 ----------------------SNLNFKPKINNSNNIETKIKIPNNIP-------IKLAN 204
+++ +P +N++E + P ++ + +
Sbjct: 182 AESGGARGSDGGFERFVVNPSAGSVHAQPGPLGANSVEREQAAPRSVDTARPRLRVIRST 241
Query: 205 SNELVQHNMILSKIDKHSNGRCIWKK 230
E H L I K S+G C+W +
Sbjct: 242 PEEAEAHAARLEAIAKASSGNCLWSR 267
>gi|398940955|ref|ZP_10669563.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM41(2012)]
gi|398162199|gb|EJM50404.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM41(2012)]
Length = 252
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 161/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFTEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ ++L QH L I K + +W
Sbjct: 183 GNASDGNGSGEGADNSATEIRRLPVDRQPTRIIRASEDDLAQHVARLETIAKSAGAPSLW 242
Query: 229 KK 230
++
Sbjct: 243 QQ 244
>gi|398792884|ref|ZP_10553423.1| DNA polymerase III, epsilon subunit [Pantoea sp. YR343]
gi|398211937|gb|EJM98549.1| DNA polymerase III, epsilon subunit [Pantoea sp. YR343]
Length = 243
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 154/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F++I D FL Y+ +E++IHNA+FD+GF+D E +L T+ +
Sbjct: 67 GIADEFLLDKPMFADIADEFLEYIRGAELVIHNASFDIGFMDYEFGMLKRDIGKTETFCQ 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MARK++ GKRNSLDALC+RY I RTLHG LLDAE+LAEV+L MT GQ++L
Sbjct: 127 ITDSLAMARKMYPGKRNSLDALCNRYEIDNSKRTLHGALLDAEILAEVFLMMTGGQTSLA 186
Query: 178 FKPKINNSN-----NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F +N NI+ ++ + + + A+ E++ H L + K G C+W+
Sbjct: 187 FSLDGEQNNQGGGENIQRIVRPSSGLRVVSASDEEIIAHEGRLDLVQK-KGGSCLWR 242
>gi|398883831|ref|ZP_10638779.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM60]
gi|398195873|gb|EJM82898.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM60]
Length = 252
Score = 217 bits (552), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 161/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFTEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ ++L QH L I K + +W
Sbjct: 183 GNASDGNGSGEGADNSATEIRRLPADRQPTRIIRASEDDLAQHMARLEVIAKSAGAPSLW 242
Query: 229 KK 230
++
Sbjct: 243 QQ 244
>gi|422764755|ref|ZP_16818482.1| DNA polymerase III [Escherichia coli E1520]
gi|323938758|gb|EGB35004.1| DNA polymerase III [Escherichia coli E1520]
Length = 246
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGGVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|77458414|ref|YP_347919.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens Pf0-1]
gi|77382417|gb|ABA73930.1| DNA polymerase III, epsilon chain [Pseudomonas fluorescens Pf0-1]
Length = 252
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 161/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+A+HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIAVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F +++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A EL +H + L I K + +W
Sbjct: 183 GNASDGNGTGEGADNSATEIRRLPADRQPGRIIRATEAELAEHQVRLEIIAKSAGAPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|300949353|ref|ZP_07163365.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1]
gi|300958303|ref|ZP_07170446.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1]
gi|301029642|ref|ZP_07192704.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1]
gi|301645470|ref|ZP_07245407.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1]
gi|331640665|ref|ZP_08341812.1| DNA polymerase III, epsilon subunit [Escherichia coli H736]
gi|386279256|ref|ZP_10056942.1| DNA polymerase III subunit epsilon [Escherichia sp. 4_1_40B]
gi|386596899|ref|YP_006093299.1| DNA polymerase III subunit epsilon [Escherichia coli DH1]
gi|404373562|ref|ZP_10978807.1| DNA polymerase III subunit epsilon [Escherichia sp. 1_1_43]
gi|418959661|ref|ZP_13511558.1| DNA polymerase III, epsilon subunit [Escherichia coli J53]
gi|419942158|ref|ZP_14458784.1| DNA polymerase III subunit epsilon [Escherichia coli 75]
gi|422816226|ref|ZP_16864441.1| DNA polymerase III subunit epsilon [Escherichia coli M919]
gi|423700992|ref|ZP_17675451.1| DNA polymerase III subunit epsilon [Escherichia coli H730]
gi|432368203|ref|ZP_19611310.1| DNA polymerase III subunit epsilon [Escherichia coli KTE10]
gi|432415163|ref|ZP_19657797.1| DNA polymerase III subunit epsilon [Escherichia coli KTE44]
gi|432483854|ref|ZP_19725782.1| DNA polymerase III subunit epsilon [Escherichia coli KTE212]
gi|432562132|ref|ZP_19798764.1| DNA polymerase III subunit epsilon [Escherichia coli KTE51]
gi|432625770|ref|ZP_19861758.1| DNA polymerase III subunit epsilon [Escherichia coli KTE77]
gi|432635529|ref|ZP_19871419.1| DNA polymerase III subunit epsilon [Escherichia coli KTE81]
gi|432659477|ref|ZP_19895142.1| DNA polymerase III subunit epsilon [Escherichia coli KTE111]
gi|432669034|ref|ZP_19904587.1| DNA polymerase III subunit epsilon [Escherichia coli KTE119]
gi|432684091|ref|ZP_19919413.1| DNA polymerase III subunit epsilon [Escherichia coli KTE156]
gi|432690095|ref|ZP_19925345.1| DNA polymerase III subunit epsilon [Escherichia coli KTE161]
gi|432702754|ref|ZP_19937885.1| DNA polymerase III subunit epsilon [Escherichia coli KTE171]
gi|432735674|ref|ZP_19970466.1| DNA polymerase III subunit epsilon [Escherichia coli KTE42]
gi|432879491|ref|ZP_20096493.1| DNA polymerase III subunit epsilon [Escherichia coli KTE154]
gi|432952970|ref|ZP_20145611.1| DNA polymerase III subunit epsilon [Escherichia coli KTE197]
gi|433046261|ref|ZP_20233703.1| DNA polymerase III subunit epsilon [Escherichia coli KTE120]
gi|433171977|ref|ZP_20356546.1| DNA polymerase III subunit epsilon [Escherichia coli KTE232]
gi|1552785|gb|AAB08637.1| DNA polymerase III epsilon chain [Escherichia coli]
gi|260450588|gb|ACX41010.1| DNA polymerase III, epsilon subunit [Escherichia coli DH1]
gi|299877469|gb|EFI85680.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 196-1]
gi|300315009|gb|EFJ64793.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 175-1]
gi|300451236|gb|EFK14856.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 116-1]
gi|301076259|gb|EFK91065.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 146-1]
gi|331040039|gb|EGI12247.1| DNA polymerase III, epsilon subunit [Escherichia coli H736]
gi|384377353|gb|EIE35247.1| DNA polymerase III, epsilon subunit [Escherichia coli J53]
gi|385540301|gb|EIF87123.1| DNA polymerase III subunit epsilon [Escherichia coli M919]
gi|385713478|gb|EIG50410.1| DNA polymerase III subunit epsilon [Escherichia coli H730]
gi|386123607|gb|EIG72198.1| DNA polymerase III subunit epsilon [Escherichia sp. 4_1_40B]
gi|388398539|gb|EIL59422.1| DNA polymerase III subunit epsilon [Escherichia coli 75]
gi|404292973|gb|EJZ49746.1| DNA polymerase III subunit epsilon [Escherichia sp. 1_1_43]
gi|430889376|gb|ELC12042.1| DNA polymerase III subunit epsilon [Escherichia coli KTE10]
gi|430944346|gb|ELC64443.1| DNA polymerase III subunit epsilon [Escherichia coli KTE44]
gi|431019507|gb|ELD32903.1| DNA polymerase III subunit epsilon [Escherichia coli KTE212]
gi|431100297|gb|ELE05301.1| DNA polymerase III subunit epsilon [Escherichia coli KTE51]
gi|431165668|gb|ELE66000.1| DNA polymerase III subunit epsilon [Escherichia coli KTE77]
gi|431174795|gb|ELE74831.1| DNA polymerase III subunit epsilon [Escherichia coli KTE81]
gi|431204299|gb|ELF02872.1| DNA polymerase III subunit epsilon [Escherichia coli KTE111]
gi|431214310|gb|ELF12134.1| DNA polymerase III subunit epsilon [Escherichia coli KTE119]
gi|431225637|gb|ELF22831.1| DNA polymerase III subunit epsilon [Escherichia coli KTE156]
gi|431231729|gb|ELF27413.1| DNA polymerase III subunit epsilon [Escherichia coli KTE161]
gi|431247738|gb|ELF41952.1| DNA polymerase III subunit epsilon [Escherichia coli KTE171]
gi|431287945|gb|ELF78731.1| DNA polymerase III subunit epsilon [Escherichia coli KTE42]
gi|431414265|gb|ELG97008.1| DNA polymerase III subunit epsilon [Escherichia coli KTE154]
gi|431472348|gb|ELH52238.1| DNA polymerase III subunit epsilon [Escherichia coli KTE197]
gi|431573773|gb|ELI46568.1| DNA polymerase III subunit epsilon [Escherichia coli KTE120]
gi|431696903|gb|ELJ62053.1| DNA polymerase III subunit epsilon [Escherichia coli KTE232]
Length = 246
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A E+ H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQK-KGGSCLWR 245
>gi|160872285|ref|ZP_02062417.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
gi|159121084|gb|EDP46422.1| DNA polymerase III, epsilon subunit [Rickettsiella grylli]
Length = 235
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 114/229 (49%), Positives = 149/229 (65%), Gaps = 4/229 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG +I +GHRIIEIGC+E+ +RQ+T H Y+NPGRDS+ A AIHGL+T
Sbjct: 2 RQIILDTETTGRDINNGHRIIEIGCLELIDRQLTKRQFHCYLNPGRDSDPGAFAIHGLST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RITDT 121
+FL +K F+ I D LN++ +S++IIHNA FD+ FL+ EL+L Y +I D+
Sbjct: 62 EFLMDKPVFTTIADELLNFIKDSQLIIHNAPFDLAFLEYELTLTKKKYKKMTDYCQILDS 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFK 179
LL+AR++H G+RNSLDALC RYNI R HG LLDAELLA VYLAMT GQ++L K
Sbjct: 122 LLLARQLHPGQRNSLDALCKRYNIDHSKRDKHGALLDAELLARVYLAMTGGQTHLFNEPK 181
Query: 180 PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
P ++ + K +PI A EL H L+ I S G+C W
Sbjct: 182 PLTIQTHARQKKTTEATTLPIIYATCEELTAHKNYLNHIYSLS-GQCKW 229
>gi|119503277|ref|ZP_01625361.1| response regulator receiver domain protein (CheY-like) [marine
gamma proteobacterium HTCC2080]
gi|119460923|gb|EAW42014.1| response regulator receiver domain protein (CheY-like) [marine
gamma proteobacterium HTCC2080]
Length = 239
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 150/238 (63%), Gaps = 8/238 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R +VLD ETTGL + GHRIIEIGCVE+ NR++TG + H YI P RD + ALA+HG+
Sbjct: 1 MKRQVVLDTETTGLEVSQGHRIIEIGCVELINRRLTGRHFHQYIQPERDIDAGALAVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSN-FTKYIYRIT 119
T +FL +K F I ++F+ ++ +E+IIHNA FDVGF+D EL+ + T + I
Sbjct: 61 TPEFLADKPTFDRIANDFVTFIDGAELIIHNAPFDVGFIDAELARFNRDHPSTSALCSIV 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF- 178
DTL +AR H G+RNSLDALC RY++ RTLHG LLDAE+LA+V+L MT GQ++L
Sbjct: 121 DTLTLARSKHPGQRNSLDALCQRYHVDNASRTLHGALLDAEILADVFLIMTGGQTSLGLH 180
Query: 179 -KPKINNSNNIETK-----IKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P + + + +P+ A + EL +H L +I HS G +W++
Sbjct: 181 DEPSEEGGSGLGARGIRRLSSERKPLPVINATAAELSRHENRLDQIATHSGGAVLWRE 238
>gi|304413386|ref|ZP_07394859.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola
LSR1]
gi|304284229|gb|EFL92622.1| DNA polymerase III epsilon subunit [Candidatus Regiella insecticola
LSR1]
Length = 242
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 159/237 (67%), Gaps = 12/237 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTGLN + GHR+IEIG VE+ NR++TGN+ H Y+ P R + A AIH
Sbjct: 7 RQIVLDTETTGLNKVGAHYQGHRVIEIGAVEMVNRRLTGNHFHVYLKPDRLVDPEAYAIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY-SNFTKYIYR 117
G++ +FL +K F++ FL+++ +++IIHNA+FD+GFLD E LL S +
Sbjct: 67 GISDEFLADKPTFADTAKTFLDFIRGADLIIHNASFDIGFLDYEFRLLEQNSAKIETFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LL+AR++ GKRN+L+ALCDRY+I RTLHG LLDAE+LAEVYLAMT GQ++L+
Sbjct: 127 ITDSLLLARQLFPGKRNNLNALCDRYHIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLS 186
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + NN I+ ++ + + I AN++EL H +L + K G+C+W+
Sbjct: 187 FSMETDQQQQNNKEEIKPIVRPTSALKIIYANADELATHQALLEGMVK--KGKCLWQ 241
>gi|451812443|ref|YP_007448897.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium galatii TCC219]
gi|451778345|gb|AGF49293.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium galatii TCC219]
Length = 232
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 148/230 (64%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IV D ETTG++ GHR+IEIGCVE+ +R IT N H YINP RD + AL++HGLT
Sbjct: 2 RQIVFDTETTGIDPTKGHRVIEIGCVEVIDRAITDNYFHVYINPDRDIDPGALSVHGLTV 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K +F IV++F+ ++ N+E+I HNA+FDV F+D ELS+ G+ + Y I D+L
Sbjct: 62 NFLSDKPRFKSIVNDFIEFIRNAELIAHNASFDVRFIDSELSMAGFESLISYCSGIIDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
ARK+ GKRNSLDALCD YNIS R LHG LLDA LLA V+L+MTRGQ L K
Sbjct: 122 DHARKLRPGKRNSLDALCDFYNISNKDRALHGALLDARLLANVWLSMTRGQDELMINNKT 181
Query: 183 NN--SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHS--NGRCIW 228
N+ N + N+PI A + E +HN + ++ KH + + IW
Sbjct: 182 NSYLRKNEYINNNLYLNLPILRATNEEQKEHNKYIEELQKHQKNDKKSIW 231
>gi|398876771|ref|ZP_10631924.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM67]
gi|398203919|gb|EJM90732.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM67]
Length = 252
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 161/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFTEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ ++L QH L I K + +W
Sbjct: 183 GNASDGNGSGEGADNSATEIRRLPADRQPTRIIRASEDDLAQHMARLEVIAKSAGAPSLW 242
Query: 229 KK 230
++
Sbjct: 243 QQ 244
>gi|406938789|gb|EKD71945.1| DNA polymerase III, epsilon chain [uncultured bacterium]
Length = 234
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 157/234 (67%), Gaps = 10/234 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL + DGHRIIEIGC+E+ +R++TGN+ HYY+NP R+ E ALA+HG+T
Sbjct: 2 RQIILDTETTGLRVEDGHRIIEIGCLEMIDRKLTGNHFHYYLNPEREVEAGALAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL NK F +I + + ++ N+EIIIHNA FD+ FL+ EL L GY + Y + + D
Sbjct: 62 EFLHNKPLFHDISEELMRFIKNAEIIIHNAPFDLSFLNHELKLTGQGYPAISDYCH-VID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS----NL 176
TL++AR++H G+RNSLDALC RY + R LHG LLDA LLA+VYLAMT GQ +L
Sbjct: 121 TLVIARQLHVGQRNSLDALCKRYAVDNTKRDLHGALLDANLLAQVYLAMTGGQGSFFDSL 180
Query: 177 NFKPKINNSNNIETKIKI-PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + T +++ + + + A S+E+ +H L K+ K G+C+W+
Sbjct: 181 HTEQTSRGQSATTTILQVDKHELTVIKATSDEISEHEHYLKKMKK--QGKCMWR 232
>gi|399001212|ref|ZP_10703930.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM18]
gi|398128405|gb|EJM17796.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM18]
Length = 252
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 160/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFTEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLIMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ +L QH L I K + +W
Sbjct: 183 GNASDGNGSGEGADNSATEIRRLPADRQPTRIIRASEEDLAQHVARLEAIAKSAGAPSLW 242
Query: 229 KK 230
++
Sbjct: 243 QQ 244
>gi|289207686|ref|YP_003459752.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sp. K90mix]
gi|288943317|gb|ADC71016.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sp. K90mix]
Length = 238
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 147/233 (63%), Gaps = 6/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL +GHR+IEIGC+E+ NR+ TG LH Y+ P R+ + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEPSEGHRVIEIGCLELDNRRPTGRKLHEYLQPDREIDAGAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--- 119
+FL +K +F+++V F+ +V +E+IIHNA FDVGF++ EL LLG + + +
Sbjct: 62 EFLADKPRFADVVGEFIEFVRGAELIIHNAPFDVGFINHELRLLGEAAPVTELVEVCTVL 121
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
D+L+MAR++H G RNSLDALC RY I RTLHG LLDAELLA+VYLAMT GQ L
Sbjct: 122 DSLVMARRMHPGTRNSLDALCKRYEIDASGRTLHGALLDAELLADVYLAMTGGQVALGLD 181
Query: 180 PKINNSNNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + +P+ +++E H +L +D+ + G C W+
Sbjct: 182 AGGDAGAEAGAPARAQRSGKPLPVIEPDADEQAAHEALLRTLDEAAGGVCRWR 234
>gi|388257309|ref|ZP_10134488.1| DNA polymerase III, epsilon subunit [Cellvibrio sp. BR]
gi|387938476|gb|EIK45028.1| DNA polymerase III, epsilon subunit [Cellvibrio sp. BR]
Length = 237
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 154/234 (65%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRIIEIGCVE+ NR++TG + H YINP R+ + A A+HG++
Sbjct: 2 RQIVLDTETTGLETSQGHRIIEIGCVELFNRRLTGRHYHQYINPEREIDAGAQAVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
L +K F+ I D+FLN+V ++E++IHNAAFD+GF++ EL++L G+ + + + + D
Sbjct: 62 AMLADKPVFARIADDFLNFVGDAELVIHNAAFDIGFINYELNMLRPGFGSIAERCH-VVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-- 178
TLLMAR H G++N+LDALC RY + R LHG LLDAE+LA+VYL MT GQ+ L+
Sbjct: 121 TLLMARAKHPGQKNNLDALCKRYGVDNSQRELHGALLDAEILADVYLLMTGGQTALSLGG 180
Query: 179 ----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ ++ N + ++P+ +A+++EL H L+ I K S C+W
Sbjct: 181 NQSKEDGGDDQNQLRRLSAQRKSLPVIMASADELELHQQKLAAIAKASGDNCVW 234
>gi|110640430|ref|YP_668158.1| DNA polymerase III subunit epsilon [Escherichia coli 536]
gi|300990975|ref|ZP_07179425.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1]
gi|306813365|ref|ZP_07447558.1| DNA polymerase III subunit epsilon [Escherichia coli NC101]
gi|417288138|ref|ZP_12075424.1| DNA polymerase III, epsilon subunit [Escherichia coli TW07793]
gi|422376869|ref|ZP_16457116.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 60-1]
gi|422379636|ref|ZP_16459825.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 57-2]
gi|432379871|ref|ZP_19622836.1| DNA polymerase III subunit epsilon [Escherichia coli KTE15]
gi|432385597|ref|ZP_19628498.1| DNA polymerase III subunit epsilon [Escherichia coli KTE16]
gi|432439547|ref|ZP_19681911.1| DNA polymerase III subunit epsilon [Escherichia coli KTE189]
gi|432444670|ref|ZP_19686980.1| DNA polymerase III subunit epsilon [Escherichia coli KTE191]
gi|432469544|ref|ZP_19711599.1| DNA polymerase III subunit epsilon [Escherichia coli KTE206]
gi|432512409|ref|ZP_19749655.1| DNA polymerase III subunit epsilon [Escherichia coli KTE224]
gi|432609917|ref|ZP_19846092.1| DNA polymerase III subunit epsilon [Escherichia coli KTE72]
gi|432644620|ref|ZP_19880426.1| DNA polymerase III subunit epsilon [Escherichia coli KTE86]
gi|432654254|ref|ZP_19889975.1| DNA polymerase III subunit epsilon [Escherichia coli KTE93]
gi|432697518|ref|ZP_19932693.1| DNA polymerase III subunit epsilon [Escherichia coli KTE169]
gi|432711899|ref|ZP_19946952.1| DNA polymerase III subunit epsilon [Escherichia coli KTE8]
gi|432730942|ref|ZP_19965793.1| DNA polymerase III subunit epsilon [Escherichia coli KTE45]
gi|432744137|ref|ZP_19978845.1| DNA polymerase III subunit epsilon [Escherichia coli KTE43]
gi|432758010|ref|ZP_19992535.1| DNA polymerase III subunit epsilon [Escherichia coli KTE46]
gi|432800538|ref|ZP_20034529.1| DNA polymerase III subunit epsilon [Escherichia coli KTE84]
gi|432902511|ref|ZP_20112259.1| DNA polymerase III subunit epsilon [Escherichia coli KTE194]
gi|432941905|ref|ZP_20139403.1| DNA polymerase III subunit epsilon [Escherichia coli KTE183]
gi|432970348|ref|ZP_20159229.1| DNA polymerase III subunit epsilon [Escherichia coli KTE207]
gi|432983935|ref|ZP_20172676.1| DNA polymerase III subunit epsilon [Escherichia coli KTE215]
gi|433012386|ref|ZP_20200773.1| DNA polymerase III subunit epsilon [Escherichia coli KTE104]
gi|433021878|ref|ZP_20209914.1| DNA polymerase III subunit epsilon [Escherichia coli KTE106]
gi|433037137|ref|ZP_20224764.1| DNA polymerase III subunit epsilon [Escherichia coli KTE113]
gi|433076371|ref|ZP_20262949.1| DNA polymerase III subunit epsilon [Escherichia coli KTE131]
gi|433081117|ref|ZP_20267595.1| DNA polymerase III subunit epsilon [Escherichia coli KTE133]
gi|433099750|ref|ZP_20285870.1| DNA polymerase III subunit epsilon [Escherichia coli KTE145]
gi|433142710|ref|ZP_20327895.1| DNA polymerase III subunit epsilon [Escherichia coli KTE168]
gi|433186928|ref|ZP_20371067.1| DNA polymerase III subunit epsilon [Escherichia coli KTE88]
gi|433196782|ref|ZP_20380719.1| DNA polymerase III subunit epsilon [Escherichia coli KTE94]
gi|110342022|gb|ABG68259.1| DNA polymerase III, epsilon chain [Escherichia coli 536]
gi|300305641|gb|EFJ60161.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 200-1]
gi|305854128|gb|EFM54567.1| DNA polymerase III subunit epsilon [Escherichia coli NC101]
gi|324009120|gb|EGB78339.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 57-2]
gi|324011829|gb|EGB81048.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 60-1]
gi|386248923|gb|EII95095.1| DNA polymerase III, epsilon subunit [Escherichia coli TW07793]
gi|430910430|gb|ELC31740.1| DNA polymerase III subunit epsilon [Escherichia coli KTE16]
gi|430912136|gb|ELC33384.1| DNA polymerase III subunit epsilon [Escherichia coli KTE15]
gi|430969753|gb|ELC86851.1| DNA polymerase III subunit epsilon [Escherichia coli KTE189]
gi|430976554|gb|ELC93418.1| DNA polymerase III subunit epsilon [Escherichia coli KTE191]
gi|431000258|gb|ELD16320.1| DNA polymerase III subunit epsilon [Escherichia coli KTE206]
gi|431045200|gb|ELD55438.1| DNA polymerase III subunit epsilon [Escherichia coli KTE224]
gi|431151893|gb|ELE52853.1| DNA polymerase III subunit epsilon [Escherichia coli KTE72]
gi|431184952|gb|ELE84691.1| DNA polymerase III subunit epsilon [Escherichia coli KTE86]
gi|431195856|gb|ELE94816.1| DNA polymerase III subunit epsilon [Escherichia coli KTE93]
gi|431247409|gb|ELF41639.1| DNA polymerase III subunit epsilon [Escherichia coli KTE169]
gi|431259924|gb|ELF52283.1| DNA polymerase III subunit epsilon [Escherichia coli KTE8]
gi|431278673|gb|ELF69650.1| DNA polymerase III subunit epsilon [Escherichia coli KTE45]
gi|431296214|gb|ELF85935.1| DNA polymerase III subunit epsilon [Escherichia coli KTE43]
gi|431312413|gb|ELG00415.1| DNA polymerase III subunit epsilon [Escherichia coli KTE46]
gi|431351434|gb|ELG38221.1| DNA polymerase III subunit epsilon [Escherichia coli KTE84]
gi|431438640|gb|ELH20014.1| DNA polymerase III subunit epsilon [Escherichia coli KTE194]
gi|431456506|gb|ELH36850.1| DNA polymerase III subunit epsilon [Escherichia coli KTE183]
gi|431486708|gb|ELH66355.1| DNA polymerase III subunit epsilon [Escherichia coli KTE207]
gi|431506969|gb|ELH85256.1| DNA polymerase III subunit epsilon [Escherichia coli KTE215]
gi|431536620|gb|ELI12783.1| DNA polymerase III subunit epsilon [Escherichia coli KTE104]
gi|431542428|gb|ELI17596.1| DNA polymerase III subunit epsilon [Escherichia coli KTE106]
gi|431556479|gb|ELI30257.1| DNA polymerase III subunit epsilon [Escherichia coli KTE113]
gi|431602844|gb|ELI72273.1| DNA polymerase III subunit epsilon [Escherichia coli KTE131]
gi|431606615|gb|ELI75990.1| DNA polymerase III subunit epsilon [Escherichia coli KTE133]
gi|431623679|gb|ELI92306.1| DNA polymerase III subunit epsilon [Escherichia coli KTE145]
gi|431667533|gb|ELJ34115.1| DNA polymerase III subunit epsilon [Escherichia coli KTE168]
gi|431710733|gb|ELJ75104.1| DNA polymerase III subunit epsilon [Escherichia coli KTE88]
gi|431726257|gb|ELJ90068.1| DNA polymerase III subunit epsilon [Escherichia coli KTE94]
Length = 246
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNA FD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNATFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|70730658|ref|YP_260399.1| DNA polymerase III subunit epsilon [Pseudomonas protegens Pf-5]
gi|68344957|gb|AAY92563.1| DNA polymerase III, epsilon subunit [Pseudomonas protegens Pf-5]
Length = 249
Score = 216 bits (551), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 156/241 (64%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F +++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFDFIQGAQLIIHNAAFDVGFINNEFALMGQHERADITQHCT-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSNNIETKI-------KIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ N ++P + P I A+ EL +H + L I K + +W
Sbjct: 183 GNASDGNGSGEGAGQASEIRRLPADRPRGRIIQASDAELAEHQVRLEIIAKSAGAPALWT 242
Query: 230 K 230
+
Sbjct: 243 Q 243
>gi|429092428|ref|ZP_19155059.1| DNA polymerase III epsilon subunit [Cronobacter dublinensis 1210]
gi|429097241|ref|ZP_19159347.1| DNA polymerase III epsilon subunit [Cronobacter dublinensis 582]
gi|426283581|emb|CCJ85460.1| DNA polymerase III epsilon subunit [Cronobacter dublinensis 582]
gi|426742823|emb|CCJ81172.1| DNA polymerase III epsilon subunit [Cronobacter dublinensis 1210]
Length = 243
Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFMVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL NK F ++VD+FL+Y+ +E++IHNA+FD+GF+D E +L T+ +
Sbjct: 67 GISDEFLLNKPVFGDVVDDFLDYIRGAELVIHNASFDIGFMDYEFGMLNRGIPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MARK+ GKRNSLDALC RY I RTLHG LLD+++LAEVYLAMT GQ+++
Sbjct: 127 ITDSLAMARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDSQILAEVYLAMTGGQTSIA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGDGQQQQGDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQK-KGGSCLWR 242
>gi|392541214|ref|ZP_10288351.1| DNA polymerase III subunit epsilon [Pseudoalteromonas piscicida JCM
20779]
gi|409202033|ref|ZP_11230236.1| DNA polymerase III subunit epsilon [Pseudoalteromonas flavipulchra
JG1]
Length = 236
Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 161/237 (67%), Gaps = 8/237 (3%)
Query: 1 MH-RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHG 59
MH R IVLD ETTG++ GHRIIEIGCVE+ NR++TGNN H YINP RD E+ A+ +HG
Sbjct: 1 MHTRQIVLDTETTGIDPKAGHRIIEIGCVELVNRRLTGNNFHVYINPQRDIEEEAIDVHG 60
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RI 118
+T +FL++K F +I F +Y+ +E++IHNA FDVGF+D E + L + Y ++
Sbjct: 61 ITNEFLRDKPFFHQIAQEFFDYIKGAELVIHNAPFDVGFMDHEFAKLNQGFPATHDYCQV 120
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL+MAR +H G++NSLDALC RY+I RTLHG LLD+E+LA+VYL+MT GQ LN
Sbjct: 121 LDTLVMARDLHPGQKNSLDALCRRYDIDNSKRTLHGALLDSEILADVYLSMTGGQKKLNL 180
Query: 179 --KPKINNSNNIETKIKIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K + +N+ I++ +N P + A+++E H L ++K + G+ +W++
Sbjct: 181 ANQNKGDQANSAGGIIRLDSNRPALKVLRASADEEQAHTERLELVNK-ACGQSLWQQ 236
>gi|304311305|ref|YP_003810903.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1]
gi|301797038|emb|CBL45251.1| DNA polymerase III epsilon subunit [gamma proteobacterium HdN1]
Length = 246
Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 151/234 (64%), Gaps = 6/234 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL +GHRIIEIGCVE+ +R+ TG + H YINP R + A+A+HG+T
Sbjct: 5 RQIVLDTETTGLEPAEGHRIIEIGCVELVDRRHTGRHYHQYINPERLVDAGAMAVHGITN 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+EI D F +++ +E++IHNAAFDVGF++ E +LL + DTL
Sbjct: 65 EFLADKPKFAEIADAFFEFINGAELVIHNAAFDVGFINHEFNLLKRFGTVGEHCSVLDTL 124
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
LMARK H G++N+LDALC RY I R LHG LLDA++LA+VYLAMT GQ+ L+F
Sbjct: 125 LMARKKHPGQKNNLDALCRRYEIDNSQRELHGALLDAQILADVYLAMTGGQTALSFSSGD 184
Query: 183 NNSNNIETKIKIP----NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + N P+K+ A+ E+ H + +DK S+G +++K
Sbjct: 185 EGQSGAASVATVQRFSDNRAPLKVIRASQAEIEAHEQYVQLLDKRSSGNTVYRK 238
>gi|398986022|ref|ZP_10691344.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM24]
gi|399012170|ref|ZP_10714496.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM16]
gi|398116277|gb|EJM06044.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM16]
gi|398152948|gb|EJM41457.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM24]
Length = 252
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 159/242 (65%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQQDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A EL H + L I K + G +W
Sbjct: 183 GNASDGNGTGDGADNSATEIRRLPADRQPARIIRATEEELAAHLVRLEIIAKSAGGPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|398966881|ref|ZP_10681688.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM30]
gi|398145351|gb|EJM34139.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM30]
Length = 252
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 159/242 (65%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F +++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A EL H L I K + G +W
Sbjct: 183 GNASDGNGTGEGADNSATEIRRLPADRQPARIIRATEEELAAHMARLEIIAKSAGGPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|424922771|ref|ZP_18346132.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens R124]
gi|404303931|gb|EJZ57893.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens R124]
Length = 252
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 159/242 (65%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F +++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQHDRADITRHCT-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A EL H L I K + G +W
Sbjct: 183 GNASDGNGTGEGADNSATEIRRLPADRQPARIIRATEEELAAHMARLEIIAKSAGGPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|291616383|ref|YP_003519125.1| DnaQ [Pantoea ananatis LMG 20103]
gi|291151413|gb|ADD75997.1| DnaQ [Pantoea ananatis LMG 20103]
Length = 243
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 152/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGGVEVINRRLTGNNFHMYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K FS+I D FL+Y+ +E++IHNA+FD+GF+D E L T+ +
Sbjct: 67 GIADEFLLDKPTFSDIADEFLDYIRGAELVIHNASFDIGFMDYEFGKLQRGIEKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MAR++ GKRNSLDALC RY I RTLHG LLDAE+LAEV+L MT GQ++L+
Sbjct: 127 ITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVFLTMTGGQTSLS 186
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + S I+ + + + + A+ E+ QH L I K G C+W+
Sbjct: 187 FSSEEERARQQQSEGIQRIARPSSGLRVVTASDEEVNQHESRLDLIMK-KGGSCLWR 242
>gi|74317680|ref|YP_315420.1| DNA polymerase III subunit epsilon [Thiobacillus denitrificans ATCC
25259]
gi|74057175|gb|AAZ97615.1| DNA polymerase III, epsilon subunit [Thiobacillus denitrificans
ATCC 25259]
Length = 232
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 107/226 (47%), Positives = 149/226 (65%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ GHRIIE+ VE+ NR++TGN+LH Y+NP RD + A+ +HG+T
Sbjct: 2 RQIILDTETTGLDPAQGHRIIEVAAVEMVNRRLTGNHLHRYVNPDRDIDAGAMQVHGITP 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K +F +I F++++ +E+IIHNA FDVGFL+MEL LLG +TDTL
Sbjct: 62 EFLQDKPRFGDIAREFVDFIDGAELIIHNAPFDVGFLNMELRLLGMPLLATCCGGVTDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA+ +H G+RN+LDALC RY + RTLHG LLD ELLA VYLA+TRGQ +L+ +I
Sbjct: 122 AMAKALHPGQRNNLDALCKRYAVDNTARTLHGALLDCELLAAVYLALTRGQESLSIGLEI 181
Query: 183 NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
S + + + A++ E H +L+ I K S G C+W
Sbjct: 182 PRSESGRAADRPRPAAILLPADAEEEAAHAALLAAIAKESKGECLW 227
>gi|16128202|ref|NP_414751.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
substr. MG1655]
gi|170079846|ref|YP_001729166.1| DNA polymerase III subunit epsilon [Escherichia coli str. K-12
substr. DH10B]
gi|238899608|ref|YP_002925404.1| DNA polymerase III subunit epsilon [Escherichia coli BW2952]
gi|386612374|ref|YP_006132040.1| DNA polymerase III subunit epsilon [Escherichia coli UMNK88]
gi|387619977|ref|YP_006127604.1| DNA polymerase III subunit epsilon [Escherichia coli DH1]
gi|388476328|ref|YP_488512.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
substr. W3110]
gi|415777407|ref|ZP_11488659.1| DNA polymerase III, epsilon subunit [Escherichia coli 3431]
gi|417260481|ref|ZP_12047979.1| DNA polymerase III, epsilon subunit [Escherichia coli 2.3916]
gi|417273865|ref|ZP_12061210.1| DNA polymerase III, epsilon subunit [Escherichia coli 2.4168]
gi|417279570|ref|ZP_12066876.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.2303]
gi|417293268|ref|ZP_12080548.1| DNA polymerase III, epsilon subunit [Escherichia coli B41]
gi|417611223|ref|ZP_12261698.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_EH250]
gi|417616555|ref|ZP_12266993.1| DNA polymerase III, epsilon subunit [Escherichia coli G58-1]
gi|417632692|ref|ZP_12282914.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_S1191]
gi|417946839|ref|ZP_12590048.1| DNA polymerase III subunit epsilon [Escherichia coli XH140A]
gi|417978126|ref|ZP_12618899.1| DNA polymerase III subunit epsilon [Escherichia coli XH001]
gi|418301099|ref|ZP_12912893.1| DNA polymerase III, epsilon subunit [Escherichia coli UMNF18]
gi|419140670|ref|ZP_13685427.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6A]
gi|419146331|ref|ZP_13691028.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6B]
gi|419152054|ref|ZP_13696645.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6C]
gi|419157472|ref|ZP_13702002.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6D]
gi|419162476|ref|ZP_13706956.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6E]
gi|419173632|ref|ZP_13717490.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7B]
gi|419811178|ref|ZP_14336055.1| DNA polymerase III subunit epsilon [Escherichia coli O32:H37 str.
P4]
gi|421778107|ref|ZP_16214691.1| DNA polymerase III subunit epsilon [Escherichia coli AD30]
gi|422769464|ref|ZP_16823155.1| DNA polymerase III [Escherichia coli E482]
gi|425117387|ref|ZP_18519160.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0566]
gi|425118292|ref|ZP_18520037.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0569]
gi|425271399|ref|ZP_18662900.1| DNA polymerase III, epsilon subunit [Escherichia coli TW15901]
gi|425281552|ref|ZP_18672675.1| DNA polymerase III, epsilon subunit [Escherichia coli TW00353]
gi|442589893|ref|ZP_21008690.1| DNA polymerase III epsilon subunit [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|450238513|ref|ZP_21898906.1| DNA polymerase III subunit epsilon [Escherichia coli S17]
gi|118805|sp|P03007.1|DPO3E_ECOLI RecName: Full=DNA polymerase III subunit epsilon
gi|42063|emb|CAA27661.1| unnamed protein product [Escherichia coli]
gi|147679|gb|AAA24564.1| DNA polymerase III epsilon subunit [Escherichia coli]
gi|1786409|gb|AAC73320.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
substr. MG1655]
gi|4902952|dbj|BAA77886.1| DNA polymerase III epsilon subunit [Escherichia coli str. K12
substr. W3110]
gi|169887681|gb|ACB01388.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
substr. DH10B]
gi|238860830|gb|ACR62828.1| DNA polymerase III epsilon subunit [Escherichia coli BW2952]
gi|315134900|dbj|BAJ42059.1| DNA polymerase III subunit epsilon [Escherichia coli DH1]
gi|315616887|gb|EFU97504.1| DNA polymerase III, epsilon subunit [Escherichia coli 3431]
gi|323943406|gb|EGB39558.1| DNA polymerase III [Escherichia coli E482]
gi|332341543|gb|AEE54877.1| DNA polymerase III, epsilon subunit DnaQ [Escherichia coli UMNK88]
gi|339413197|gb|AEJ54869.1| DNA polymerase III, epsilon subunit [Escherichia coli UMNF18]
gi|342361464|gb|EGU25602.1| DNA polymerase III subunit epsilon [Escherichia coli XH140A]
gi|344192189|gb|EGV46286.1| DNA polymerase III subunit epsilon [Escherichia coli XH001]
gi|345366310|gb|EGW98401.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_EH250]
gi|345382591|gb|EGX13465.1| DNA polymerase III, epsilon subunit [Escherichia coli G58-1]
gi|345391378|gb|EGX21170.1| DNA polymerase III, epsilon subunit [Escherichia coli STEC_S1191]
gi|359331068|dbj|BAL37515.1| DNA polymerase III epsilon subunit [Escherichia coli str. K-12
substr. MDS42]
gi|378000003|gb|EHV63077.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6A]
gi|378002018|gb|EHV65073.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6B]
gi|378004027|gb|EHV67060.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6C]
gi|378015393|gb|EHV78289.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6D]
gi|378016942|gb|EHV79817.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC6E]
gi|378038227|gb|EHW00744.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7B]
gi|385156120|gb|EIF18119.1| DNA polymerase III subunit epsilon [Escherichia coli O32:H37 str.
P4]
gi|386225639|gb|EII47964.1| DNA polymerase III, epsilon subunit [Escherichia coli 2.3916]
gi|386234047|gb|EII66027.1| DNA polymerase III, epsilon subunit [Escherichia coli 2.4168]
gi|386237669|gb|EII74613.1| DNA polymerase III, epsilon subunit [Escherichia coli 3.2303]
gi|386252840|gb|EIJ02531.1| DNA polymerase III, epsilon subunit [Escherichia coli B41]
gi|408198050|gb|EKI23295.1| DNA polymerase III, epsilon subunit [Escherichia coli TW15901]
gi|408206583|gb|EKI31376.1| DNA polymerase III, epsilon subunit [Escherichia coli TW00353]
gi|408456839|gb|EKJ80646.1| DNA polymerase III subunit epsilon [Escherichia coli AD30]
gi|408563175|gb|EKK39315.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0566]
gi|408574183|gb|EKK49977.1| DNA polymerase III, epsilon subunit [Escherichia coli 8.0569]
gi|441609939|emb|CCP94603.1| DNA polymerase III epsilon subunit [Escherichia coli O10:K5(L):H4
str. ATCC 23506]
gi|449325450|gb|EMD15354.1| DNA polymerase III subunit epsilon [Escherichia coli S17]
Length = 243
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A E+ H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQK-KGGSCLWR 242
>gi|334704346|ref|ZP_08520212.1| DNA polymerase III, epsilon subunit [Aeromonas caviae Ae398]
Length = 244
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 155/240 (64%), Gaps = 11/240 (4%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
++R I+LD ETTG+N G HRIIEIGCVE+ NR++TGN+ H YI P R + A+
Sbjct: 6 LNRQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHFHVYIKPDRLVDPEAI 65
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI 115
A+HG+T FL +K F++I D+F+ ++ +E+I HNA FDV F+D E S LG + T I
Sbjct: 66 AVHGITDAFLADKPSFNQIADDFIEFIRGAELIAHNAPFDVSFMDYEFSKLGLNFKTADI 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
ITDTL MAR + GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 126 CGITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTK 185
Query: 176 LNFKPKINNS-NNIETKIKI--PNNIPIKLANSNELVQ--HNMILSKIDKHSNGRCIWKK 230
LN + + S + +T I+ N P+++ +++ V H L + K G C+W++
Sbjct: 186 LNLASETSESETSQDTGIRRLESNRPPLRVVRASDEVAAVHEARLDLVQK-KGGACLWRQ 244
>gi|117619304|ref|YP_856106.1| DNA polymerase III subunit epsilon [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
gi|117560711|gb|ABK37659.1| DNA polymerase III, epsilon subunit [Aeromonas hydrophila subsp.
hydrophila ATCC 7966]
Length = 244
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 112/240 (46%), Positives = 155/240 (64%), Gaps = 11/240 (4%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
++R I+LD ETTG+N G HRIIEIGCVE+ NR++TGN+ H YI P R + A+
Sbjct: 6 LNRQIILDTETTGMNTAGGPVYLGHRIIEIGCVEVINRKLTGNHFHVYIKPDRLVDPEAI 65
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI 115
+HG+T +FL++K FS+I D F+ ++ +E+I HNA FDV F+D E LG + T I
Sbjct: 66 QVHGITDEFLRDKPSFSQIADEFIEFIRGAELIAHNAPFDVSFMDYEFGKLGLNFKTADI 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
ITDTL MAR + GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 126 CGITDTLAMARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTK 185
Query: 176 LNFKPKIN-NSNNIETKIKI--PNNIPIKLANSNELVQ--HNMILSKIDKHSNGRCIWKK 230
LN + + N +N +T I+ N P+K+ ++ ++ H L + K G C+W++
Sbjct: 186 LNLATESSENESNQDTSIRRLESNRPPLKVIRASAEIEAVHEARLDLVQK-KGGACLWRQ 244
>gi|432370984|ref|ZP_19614051.1| DNA polymerase III subunit epsilon [Escherichia coli KTE11]
gi|430901001|gb|ELC22989.1| DNA polymerase III subunit epsilon [Escherichia coli KTE11]
Length = 246
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFADVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|238897890|ref|YP_002923569.1| DNA polymerase III subunit epsilon [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
gi|229465647|gb|ACQ67421.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Candidatus Hamiltonella defensa
5AT (Acyrthosiphon pisum)]
Length = 241
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 113/239 (47%), Positives = 149/239 (62%), Gaps = 11/239 (4%)
Query: 1 MHRHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
M R IVLD ETTGLN +GH IIEIG VE+ NR++TG H Y+ P R + A
Sbjct: 1 MTRQIVLDTETTGLNKTGPHYEGHNIIEIGAVEVINRRLTGKTFHTYVRPNRQVDPEAYQ 60
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYI 115
IHG++ +FL +K +FSEI F ++ SE+IIHNAAFD+GF+D E S L + T
Sbjct: 61 IHGISDEFLSDKPRFSEIFSQFFEFIRGSELIIHNAAFDIGFMDYEFSALQQNIPKTNTF 120
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
+TDTL +AR++ GKRNSLDALCDRY I RTLHG LLDA++LAEVYLAMT GQ+
Sbjct: 121 CTVTDTLALARRLFPGKRNSLDALCDRYQIDNSKRTLHGALLDAQILAEVYLAMTGGQTL 180
Query: 176 LNFKPK-----INNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+F + I N ++K + + I A+ +EL +H L ++K G CIW+
Sbjct: 181 FSFSDETDETDIRNMTVRPKRVKTSSQLKIIYASCDELDEHQASLDLLEK-KEGSCIWR 238
>gi|22126970|ref|NP_670393.1| DNA polymerase III subunit epsilon [Yersinia pestis KIM10+]
gi|45442535|ref|NP_994074.1| DNA polymerase III subunit epsilon [Yersinia pestis biovar Microtus
str. 91001]
gi|51597279|ref|YP_071470.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
32953]
gi|108806557|ref|YP_650473.1| DNA polymerase III subunit epsilon [Yersinia pestis Antiqua]
gi|108813076|ref|YP_648843.1| DNA polymerase III subunit epsilon [Yersinia pestis Nepal516]
gi|145598912|ref|YP_001162988.1| DNA polymerase III subunit epsilon [Yersinia pestis Pestoides F]
gi|149366915|ref|ZP_01888949.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
gi|153948473|ref|YP_001400036.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis IP
31758]
gi|162419464|ref|YP_001607083.1| DNA polymerase III subunit epsilon [Yersinia pestis Angola]
gi|165924368|ref|ZP_02220200.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165938341|ref|ZP_02226899.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
Orientalis str. IP275]
gi|166011939|ref|ZP_02232837.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166211805|ref|ZP_02237840.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
str. B42003004]
gi|167399939|ref|ZP_02305457.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167419869|ref|ZP_02311622.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167424264|ref|ZP_02316017.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|170023355|ref|YP_001719860.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
YPIII]
gi|186896384|ref|YP_001873496.1| DNA polymerase III subunit epsilon [Yersinia pseudotuberculosis
PB1/+]
gi|218928251|ref|YP_002346126.1| DNA polymerase III subunit epsilon [Yersinia pestis CO92]
gi|229841013|ref|ZP_04461172.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229843118|ref|ZP_04463264.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
Orientalis str. India 195]
gi|229895464|ref|ZP_04510636.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
gi|229903519|ref|ZP_04518632.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
gi|270487300|ref|ZP_06204374.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
gi|294503098|ref|YP_003567160.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
gi|384121539|ref|YP_005504159.1| DNA polymerase III subunit epsilon [Yersinia pestis D106004]
gi|384141050|ref|YP_005523752.1| DNA polymerase III subunit epsilon [Yersinia pestis A1122]
gi|384413714|ref|YP_005623076.1| DNA polymerase III subunit epsilon [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|420545707|ref|ZP_15043780.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-01]
gi|420551015|ref|ZP_15048530.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-02]
gi|420556531|ref|ZP_15053412.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-03]
gi|420562113|ref|ZP_15058303.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-04]
gi|420567137|ref|ZP_15062842.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-05]
gi|420572791|ref|ZP_15067977.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-06]
gi|420578119|ref|ZP_15072799.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-07]
gi|420583469|ref|ZP_15077666.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-08]
gi|420588619|ref|ZP_15082307.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-09]
gi|420593936|ref|ZP_15087098.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-10]
gi|420599616|ref|ZP_15092177.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-11]
gi|420605098|ref|ZP_15097079.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-12]
gi|420610454|ref|ZP_15101920.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-13]
gi|420615757|ref|ZP_15106620.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-14]
gi|420621154|ref|ZP_15111375.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-15]
gi|420626218|ref|ZP_15115963.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-16]
gi|420631404|ref|ZP_15120655.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-19]
gi|420636505|ref|ZP_15125221.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-25]
gi|420642083|ref|ZP_15130257.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-29]
gi|420647230|ref|ZP_15134970.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-32]
gi|420652872|ref|ZP_15140031.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-34]
gi|420658392|ref|ZP_15144999.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-36]
gi|420663713|ref|ZP_15149755.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-42]
gi|420668692|ref|ZP_15154268.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-45]
gi|420673991|ref|ZP_15159090.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-46]
gi|420679537|ref|ZP_15164121.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-47]
gi|420684791|ref|ZP_15168826.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-48]
gi|420689956|ref|ZP_15173406.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-52]
gi|420695762|ref|ZP_15178489.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-53]
gi|420701144|ref|ZP_15183095.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-54]
gi|420707151|ref|ZP_15187972.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-55]
gi|420712467|ref|ZP_15192765.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-56]
gi|420717872|ref|ZP_15197502.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-58]
gi|420723472|ref|ZP_15202317.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-59]
gi|420729088|ref|ZP_15207330.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-60]
gi|420734148|ref|ZP_15211897.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-61]
gi|420739621|ref|ZP_15216828.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-63]
gi|420744959|ref|ZP_15221529.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-64]
gi|420750746|ref|ZP_15226477.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-65]
gi|420756014|ref|ZP_15231053.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-66]
gi|420761858|ref|ZP_15235818.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-71]
gi|420767105|ref|ZP_15240554.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-72]
gi|420772095|ref|ZP_15245035.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-76]
gi|420777508|ref|ZP_15249874.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-88]
gi|420783040|ref|ZP_15254715.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-89]
gi|420788388|ref|ZP_15259428.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-90]
gi|420793864|ref|ZP_15264370.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-91]
gi|420798981|ref|ZP_15268974.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-92]
gi|420804330|ref|ZP_15273785.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-93]
gi|420809572|ref|ZP_15278535.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-94]
gi|420815289|ref|ZP_15283658.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-95]
gi|420820457|ref|ZP_15288337.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-96]
gi|420825555|ref|ZP_15292892.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-98]
gi|420831328|ref|ZP_15298114.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-99]
gi|420836178|ref|ZP_15302485.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-100]
gi|420841318|ref|ZP_15307143.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-101]
gi|420846939|ref|ZP_15312216.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-102]
gi|420852354|ref|ZP_15316988.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-103]
gi|420857871|ref|ZP_15321678.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-113]
gi|421762533|ref|ZP_16199330.1| DNA polymerase III subunit epsilon [Yersinia pestis INS]
gi|21960013|gb|AAM86644.1|AE013910_6 DNA polymerase III, epsilon subunit [Yersinia pestis KIM10+]
gi|45437400|gb|AAS62951.1| DNA polymerase III, epsilon chain [Yersinia pestis biovar Microtus
str. 91001]
gi|51590561|emb|CAH22202.1| DNA polymerase III, epsilon chain [Yersinia pseudotuberculosis IP
32953]
gi|108776724|gb|ABG19243.1| DNA polymerase III, epsilon subunit [Yersinia pestis Nepal516]
gi|108778470|gb|ABG12528.1| DNA polymerase III, epsilon subunit [Yersinia pestis Antiqua]
gi|115346862|emb|CAL19748.1| DNA polymerase III, epsilon chain [Yersinia pestis CO92]
gi|145210608|gb|ABP40015.1| DNA polymerase III, epsilon subunit [Yersinia pestis Pestoides F]
gi|149291289|gb|EDM41364.1| DNA polymerase III, epsilon chain [Yersinia pestis CA88-4125]
gi|152959968|gb|ABS47429.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis IP
31758]
gi|162352279|gb|ABX86227.1| DNA polymerase III, epsilon subunit [Yersinia pestis Angola]
gi|165913719|gb|EDR32338.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923428|gb|EDR40560.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165989106|gb|EDR41407.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
str. E1979001]
gi|166207576|gb|EDR52056.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
str. B42003004]
gi|166962610|gb|EDR58631.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050647|gb|EDR62055.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar Antiqua
str. UG05-0454]
gi|167057113|gb|EDR66876.1| DNA polymerase III, epsilon subunit [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749889|gb|ACA67407.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
YPIII]
gi|186699410|gb|ACC90039.1| DNA polymerase III, epsilon subunit [Yersinia pseudotuberculosis
PB1/+]
gi|229679289|gb|EEO75392.1| DNA polymerase III epsilon subunit [Yersinia pestis Nepal516]
gi|229689465|gb|EEO81526.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
Orientalis str. India 195]
gi|229697379|gb|EEO87426.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229701619|gb|EEO89646.1| DNA polymerase III epsilon subunit [Yersinia pestis Pestoides A]
gi|262361135|gb|ACY57856.1| DNA polymerase III subunit epsilon [Yersinia pestis D106004]
gi|270335804|gb|EFA46581.1| DNA polymerase III, epsilon subunit [Yersinia pestis KIM D27]
gi|294353557|gb|ADE63898.1| DNA polymerase III subunit epsilon [Yersinia pestis Z176003]
gi|320014218|gb|ADV97789.1| DNA polymerase III epsilon subunit [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|342856179|gb|AEL74732.1| DNA polymerase III subunit epsilon [Yersinia pestis A1122]
gi|391429920|gb|EIQ91714.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-01]
gi|391431023|gb|EIQ92654.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-02]
gi|391433230|gb|EIQ94586.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-03]
gi|391446031|gb|EIR06108.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-04]
gi|391446664|gb|EIR06686.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-05]
gi|391450641|gb|EIR10255.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-06]
gi|391462196|gb|EIR20736.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-07]
gi|391463381|gb|EIR21791.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-08]
gi|391465488|gb|EIR23681.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-09]
gi|391478907|gb|EIR35767.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-10]
gi|391479981|gb|EIR36702.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-11]
gi|391480188|gb|EIR36887.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-12]
gi|391494130|gb|EIR49399.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-13]
gi|391495278|gb|EIR50394.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-15]
gi|391498089|gb|EIR52885.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-14]
gi|391510051|gb|EIR63623.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-16]
gi|391510860|gb|EIR64339.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-19]
gi|391515040|gb|EIR68097.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-25]
gi|391525562|gb|EIR77693.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-29]
gi|391528356|gb|EIR80180.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-34]
gi|391529363|gb|EIR81065.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-32]
gi|391542102|gb|EIR92593.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-36]
gi|391543883|gb|EIR94166.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-42]
gi|391544843|gb|EIR95005.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-45]
gi|391558965|gb|EIS07799.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-46]
gi|391559578|gb|EIS08331.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-47]
gi|391560917|gb|EIS09505.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-48]
gi|391574189|gb|EIS21130.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-52]
gi|391574796|gb|EIS21632.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-53]
gi|391586503|gb|EIS31798.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-55]
gi|391587116|gb|EIS32330.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-54]
gi|391590075|gb|EIS34879.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-56]
gi|391603478|gb|EIS46661.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-60]
gi|391603820|gb|EIS46958.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-58]
gi|391605022|gb|EIS47957.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-59]
gi|391617847|gb|EIS59351.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-61]
gi|391618476|gb|EIS59898.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-63]
gi|391625446|gb|EIS65940.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-64]
gi|391629538|gb|EIS69457.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-65]
gi|391640932|gb|EIS79418.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-71]
gi|391643525|gb|EIS81686.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-72]
gi|391643593|gb|EIS81749.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-66]
gi|391653173|gb|EIS90167.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-76]
gi|391659009|gb|EIS95358.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-88]
gi|391663863|gb|EIS99659.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-89]
gi|391665958|gb|EIT01487.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-90]
gi|391671985|gb|EIT06873.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-91]
gi|391684099|gb|EIT17818.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-93]
gi|391685497|gb|EIT19031.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-92]
gi|391686385|gb|EIT19813.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-94]
gi|391698107|gb|EIT30445.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-95]
gi|391701743|gb|EIT33707.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-96]
gi|391702753|gb|EIT34605.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-98]
gi|391712279|gb|EIT43175.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-99]
gi|391718634|gb|EIT48864.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-100]
gi|391719000|gb|EIT49188.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-101]
gi|391729838|gb|EIT58787.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-102]
gi|391732799|gb|EIT61321.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-103]
gi|391736443|gb|EIT64468.1| DNA polymerase III, epsilon subunit [Yersinia pestis PY-113]
gi|411176739|gb|EKS46754.1| DNA polymerase III subunit epsilon [Yersinia pestis INS]
Length = 254
Score = 216 bits (550), Expect = 6e-54, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 152/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPDRLVDPEAYGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I FL+++ +E++IHNAAFD+GF+D E +L T+
Sbjct: 67 GISDEFLADKPTFADITPEFLDFIRGAELVIHNAAFDIGFMDYEFRMLQQDIPKTETFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMAR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLLMARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLT 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + N S +I+ + + + I A +EL H L + K G C+W+
Sbjct: 187 FSMEGEVSQNNASEDIQRITRPASALKIIYATEDELANHESRLDFVMK-KGGSCLWR 242
>gi|261820459|ref|YP_003258565.1| DNA polymerase III subunit epsilon [Pectobacterium wasabiae WPP163]
gi|261604472|gb|ACX86958.1| DNA polymerase III, epsilon subunit [Pectobacterium wasabiae
WPP163]
gi|385870636|gb|AFI89156.1| DNA polymerase III, epsilon subunit [Pectobacterium sp. SCC3193]
Length = 245
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 155/238 (65%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG + H YI P R + A IH
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPDRLVDPEAYNIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K +++I D+FL+++ +E++IHNA FD+GF+D E LL T+ +
Sbjct: 67 GISDEFLADKPTYADIADDFLDFIRGAELVIHNATFDIGFMDYEFRLLNRDLPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MARKI GKRNSLDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLFMARKIFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLT 186
Query: 178 F------KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + NS I+ ++ + + + A+ EL+ H L I K G C+W+
Sbjct: 187 FSMDGETQQQNENSETIQRIVRPQSALTVLYADEVELLAHEQRLDLIAK-KGGSCLWR 243
>gi|359433766|ref|ZP_09224080.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20652]
gi|357919627|dbj|GAA60329.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20652]
Length = 237
Score = 216 bits (550), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 155/234 (66%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGNN H YINP R SE+ A+ +HG+T
Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRPSEEEAIDVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL++K F +I F +Y+ +E++IHNA FD+G +D E +LL GY T+ ++ D
Sbjct: 64 EFLRDKPLFHQIAQEFFDYIEGAELVIHNAPFDIGHMDNEFALLNQGYPK-TETFCQVLD 122
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-K 179
TL MAR +H G++N+LDALC RY++ RTLHG LLD+E+LA+VYLAMT GQ+ LN +
Sbjct: 123 TLKMARDLHPGQKNNLDALCRRYDVDNGKRTLHGALLDSEILADVYLAMTGGQTKLNLNQ 182
Query: 180 PKINNSNNIETKIKIPNNIPIKL----ANSNELVQHNMILSKIDKHSNGRCIWK 229
K + S + IK N+ L A+ E H L ++K G+CIW+
Sbjct: 183 NKDDGSEQQKGGIKRLNSDRAPLVVLRASDAEQSAHEARLDLVNKEG-GQCIWR 235
>gi|372489110|ref|YP_005028675.1| DNA polymerase III subunit epsilon [Dechlorosoma suillum PS]
gi|359355663|gb|AEV26834.1| DNA polymerase III, epsilon subunit [Dechlorosoma suillum PS]
Length = 239
Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 149/228 (65%), Gaps = 2/228 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL GHRIIE+ VE+ NR++T + H YINP R ++ A A+HG++
Sbjct: 2 RQIFLDTETTGLEHKQGHRIIEVAGVEMVNRRLTNRHFHKYINPERAIDEGAQAVHGISL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+ I +FL+++ +E++IHNAAFDVGFL+ EL+ L + + DTL
Sbjct: 62 EFLADKPKFAAIAADFLDFIRGAELVIHNAAFDVGFLNAELARLKLPPVGEVCSGVVDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA+++H GK+N+L+ALCDRY + HRTLHG LLDAE+LAEVY+AMTRGQ +L
Sbjct: 122 KMAKEMHPGKKNNLNALCDRYEVDNSHRTLHGALLDAEILAEVYVAMTRGQESLMIDLGQ 181
Query: 183 NNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
+ E + P ++ A+ EL H +L+ I+K S G+C+W
Sbjct: 182 APAAAAEIAMSTGQRRPTRVLRASIEELAAHEQVLAGINKESKGKCLW 229
>gi|359443112|ref|ZP_09232960.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20429]
gi|392536191|ref|ZP_10283328.1| DNA polymerase III subunit epsilon [Pseudoalteromonas arctica A
37-1-2]
gi|358035016|dbj|GAA69209.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20429]
Length = 237
Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 113/234 (48%), Positives = 154/234 (65%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGNN H YINP R SE+ A+ +HG+T
Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRPSEEEAIDVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL++K F +I F +Y+ +E++IHNA FDVG +D E +LL GY T ++ D
Sbjct: 64 EFLRDKPLFHQIAQEFFDYIEGAELVIHNAPFDVGHMDNEFALLNQGYPK-TDTFCQVLD 122
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-K 179
TL MAR +H G++N+LDALC RY++ RTLHG LLD+E+LA+VYLAMT GQ+ LN +
Sbjct: 123 TLKMARDLHPGQKNNLDALCRRYDVDNGKRTLHGALLDSEILADVYLAMTGGQTKLNLNQ 182
Query: 180 PKINNSNNIETKIKIPNNIPIKL----ANSNELVQHNMILSKIDKHSNGRCIWK 229
K + S + IK N+ L A+ E H L ++K G+CIW+
Sbjct: 183 NKDDGSEQQKGGIKRLNSDRAPLVVLRASDAEQSAHEARLDLVNKEG-GQCIWR 235
>gi|385787433|ref|YP_005818542.1| DNA polymerase III subunit epsilon [Erwinia sp. Ejp617]
gi|310766705|gb|ADP11655.1| DNA polymerase III subunit epsilon [Erwinia sp. Ejp617]
Length = 252
Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 155/238 (65%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 8 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLIDPEAFGVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G+ +FL +K F++I D+FL Y++ +E++IHNA+FD+GF+D E + L G + T+
Sbjct: 68 GIADEFLLDKPTFAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAK-TETFC 126
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITD+L MARK+ GKRNSLDALC RY I RTLHG LLD+E+LAEV+L MT GQ++L
Sbjct: 127 KITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFLTMTGGQTSL 186
Query: 177 NF-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + K + I + + + + A+ EL+ H L ++K G C+W+
Sbjct: 187 AFSMEGEREKQQDGETIHRIARPSSGLRVVRASEQELMAHEARLDLVEK-KGGSCLWR 243
>gi|296101380|ref|YP_003611526.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295055839|gb|ADF60577.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
cloacae ATCC 13047]
Length = 243
Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D FL+Y+ +E++IHNA+FD+GF+D E S L T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFLDYIKGAELVIHNASFDIGFMDYEFSKLQRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQTSMK 186
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + LA+ EL+ H L + K G C+W+
Sbjct: 187 FSMENESQQTQGEAGIQRVVRQASRLRVVLASDEELLNHESRLDLVQK-KGGSCMWR 242
>gi|71733799|ref|YP_273952.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|289627521|ref|ZP_06460475.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|289649928|ref|ZP_06481271.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
aesculi str. 2250]
gi|422583527|ref|ZP_16658650.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|422595353|ref|ZP_16669641.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422683361|ref|ZP_16741622.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
gi|71554352|gb|AAZ33563.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
phaseolicola 1448A]
gi|298159287|gb|EFI00345.1| DNA polymerase III epsilon subunit [Pseudomonas savastanoi pv.
savastanoi NCPPB 3335]
gi|330868357|gb|EGH03066.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330985658|gb|EGH83761.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|331012696|gb|EGH92752.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. tabaci
str. ATCC 11528]
Length = 259
Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 157/240 (65%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS-IL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINN---------SNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ + E + + P ++ A+ +EL +H + +S I K S +W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPALW 247
>gi|366160508|ref|ZP_09460370.1| DNA polymerase III subunit epsilon [Escherichia sp. TW09308]
Length = 243
Score = 216 bits (549), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFADVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 242
>gi|432552249|ref|ZP_19788982.1| DNA polymerase III subunit epsilon [Escherichia coli KTE47]
gi|431087176|gb|ELD93175.1| DNA polymerase III subunit epsilon [Escherichia coli KTE47]
Length = 246
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNA FD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNATFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGETAIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|365969123|ref|YP_004950685.1| DNA polymerase III subunit epsilon [Enterobacter cloacae EcWSU1]
gi|365748036|gb|AEW72263.1| DNA polymerase III subunit epsilon [Enterobacter cloacae EcWSU1]
Length = 246
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D FL Y+ +E+IIHNA+FD+GF+D E S L T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFLEYIKGAELIIHNASFDIGFMDYEFSKLHRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQTSMK 189
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + LA+ +EL+ H L + K G C+W+
Sbjct: 190 FSMENESQQTQGEAGIQRVVRQASRLRVVLASDDELLNHESRLDLVQK-KGGSCMWR 245
>gi|191171395|ref|ZP_03032944.1| DNA polymerase III, epsilon subunit [Escherichia coli F11]
gi|222155035|ref|YP_002555174.1| DNA polymerase III subunit epsilon [Escherichia coli LF82]
gi|387615557|ref|YP_006118579.1| DNA polymerase III subunit epsilon [Escherichia coli O83:H1 str.
NRG 857C]
gi|416334129|ref|ZP_11671148.1| DNA polymerase III epsilon subunit [Escherichia coli WV_060327]
gi|419699139|ref|ZP_14226761.1| DNA polymerase III subunit epsilon [Escherichia coli SCI-07]
gi|433327038|ref|ZP_20403645.1| DNA polymerase III subunit epsilon [Escherichia coli J96]
gi|190908329|gb|EDV67919.1| DNA polymerase III, epsilon subunit [Escherichia coli F11]
gi|222032040|emb|CAP74779.1| DNA polymerase III subunit epsilon [Escherichia coli LF82]
gi|312944818|gb|ADR25645.1| DNA polymerase III subunit epsilon [Escherichia coli O83:H1 str.
NRG 857C]
gi|320197298|gb|EFW71914.1| DNA polymerase III epsilon subunit [Escherichia coli WV_060327]
gi|380349661|gb|EIA37927.1| DNA polymerase III subunit epsilon [Escherichia coli SCI-07]
gi|432345109|gb|ELL39631.1| DNA polymerase III subunit epsilon [Escherichia coli J96]
Length = 243
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNA FD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNATFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 242
>gi|398994395|ref|ZP_10697297.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM21]
gi|398132267|gb|EJM21547.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM21]
Length = 252
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 159/242 (65%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFTEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + I A+ ++L QH L I K + +W
Sbjct: 183 GNASDGNGSGEGADNSATEIRRLPADRTRARIIRASEDDLAQHVARLEAIAKAAGAPSLW 242
Query: 229 KK 230
++
Sbjct: 243 QQ 244
>gi|417284427|ref|ZP_12071722.1| DNA polymerase III, epsilon subunit [Escherichia coli 3003]
gi|386242636|gb|EII84371.1| DNA polymerase III, epsilon subunit [Escherichia coli 3003]
Length = 246
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNA FD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNATFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGTCLWR 245
>gi|399004762|ref|ZP_10707370.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM17]
gi|398128678|gb|EJM18061.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM17]
Length = 252
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 154/241 (63%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG---YSNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFIQGAQLIIHNAAFDVGFINNEFVLMGRHDRADITQHCT-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTLLMAR+ H G+RNSLDALC RY++ R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLLMARERHPGQRNSLDALCKRYDVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSNNIETKIKIPNNI----------PIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ N E + I + A+ ELV+H + L I K + +W
Sbjct: 183 GNASDGNGSEGSGNSASEIRRLSADRQRGRVIRASEAELVEHQVRLEIIAKSAGAPALWT 242
Query: 230 K 230
+
Sbjct: 243 Q 243
>gi|429462935|ref|YP_007184398.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
gi|429338449|gb|AFZ82872.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium crithidii (ex Angomonas deanei
ATCC 30255)]
Length = 237
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 108/229 (47%), Positives = 150/229 (65%), Gaps = 9/229 (3%)
Query: 5 IVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKF 64
++ DIETTGL++ DGHR+IEIGCVEI NR IT LH YINP R+ + AL++HGLT++F
Sbjct: 1 MIFDIETTGLDVSDGHRVIEIGCVEINNRIITDRYLHLYINPHREIDVGALSVHGLTSEF 60
Query: 65 LKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLM 124
L +K F++++ FL++++++EII HNA FDV F++ EL L N +KY +ITD+L +
Sbjct: 61 LSDKPDFADVITQFLDFINDAEIIAHNAQFDVKFINSELDKLNLGNLSKYCRKITDSLSL 120
Query: 125 ARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKINN 184
ARKI GKRNSLDALCD Y IS + R +HG LLD+ LL++V+LAMTRGQ+ N
Sbjct: 121 ARKIRPGKRNSLDALCDHYGISNLDRKMHGALLDSRLLSQVWLAMTRGQNEFLIDDYERN 180
Query: 185 SNNIE-----TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + KI +P IP E+ H L + K S+ +W
Sbjct: 181 KKSFQITDNHAKISLPVIIP----KEEEINSHQEYLRNMKKESSNSVLW 225
>gi|424100528|ref|ZP_17835731.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1990]
gi|390674553|gb|EIN50737.1| DNA polymerase III, epsilon subunit [Escherichia coli FRIK1990]
Length = 243
Score = 216 bits (549), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++L EVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILTEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRLVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 242
>gi|407696195|ref|YP_006820983.1| DNA polymerase III subunit epsilon [Alcanivorax dieselolei B5]
gi|407253533|gb|AFT70640.1| DNA polymerase III, epsilon subunit [Alcanivorax dieselolei B5]
Length = 239
Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 107/233 (45%), Positives = 156/233 (66%), Gaps = 7/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRIIEIGCVE+ NR+ITGNNLH YINP R+ ++ A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEPAAGHRIIEIGCVEVMNRRITGNNLHLYINPEREIDQGAMEVHGITL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFT-KYIYRITDT 121
+FL +K F+++ + F+N++ +E++IHNA FDVGF++ EL LLG T + R+ DT
Sbjct: 62 EFLADKPVFAQVAEEFVNFIDGAELVIHNAPFDVGFINHELKLLGARWGTVEQRCRVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L +AR++H G++NSLDALC RY++ HR LHG LLD+E+LA+VYLAMT GQ+NL+ +
Sbjct: 122 LRLAREMHPGQKNSLDALCRRYDVDNGHRELHGALLDSEILADVYLAMTGGQTNLSLDGQ 181
Query: 182 INNSN---NIETKIKIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIW 228
+S E ++ + P + A+ +L +H L + + + +W
Sbjct: 182 DGSSGGQRQAEAIRRLSADRPSLRVVSADGGDLQRHLDKLRSMAEQNGEPTLW 234
>gi|392309629|ref|ZP_10272163.1| DNA polymerase III subunit epsilon [Pseudoalteromonas citrea NCIMB
1889]
Length = 235
Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 157/237 (66%), Gaps = 10/237 (4%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+ R IVLD ETTG++ GHRIIEIGCVE+ NR++TGNN H YINP R E+ A+ +HG+
Sbjct: 2 LKRQIVLDTETTGIDPKSGHRIIEIGCVELVNRRLTGNNFHVYINPQRSIEEEAIDVHGI 61
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRI 118
T +FLK K F ++ F ++ +E++IHNA FDVGF+D E +LL GY T +
Sbjct: 62 TNEFLKGKPLFQDVAQEFFEFIKGAELVIHNAPFDVGFMDHEFALLNQGYP-LTHEYCEV 120
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL+MAR +H G++N+LDALC RY+I RTLHG LLD+E+LA+VYL MT GQ LN
Sbjct: 121 LDTLVMARDLHPGQKNNLDALCRRYDIDNAKRTLHGALLDSEILADVYLGMTGGQKKLNL 180
Query: 179 KP--KINNSNNIETKIKIPNN-IPIK--LANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + N I++ ++ P+K +AN++E++ H L ++K +G IW++
Sbjct: 181 ASGNESGSKNQQGDIIRLSSDRQPLKVIMANADEVIAHEERLKVVNK--DGETIWQQ 235
>gi|330503134|ref|YP_004380003.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
gi|328917420|gb|AEB58251.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina NK-01]
Length = 252
Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 155/239 (64%), Gaps = 12/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R++VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+NP R+ ++ A+A+HG+T
Sbjct: 9 RYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPDREIDEGAIAVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS---NFTKYIYRIT 119
+++ +K +F E+ D F ++ +++IIHNAAFDVGF++ E +LLG S + + Y +
Sbjct: 69 EYVADKPRFREVADEFYEFIKGAQLIIHNAAFDVGFINNEFALLGQSERADVSDYC-SVL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + +R LHG LLD+E+LA+VYLAMT GQ+NL+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAMTGGQTNLSLA 187
Query: 180 PKINNSNNIETKIKIP--------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + P + A+ EL H L+ I+K + G +W +
Sbjct: 188 GDGADGDGSGRQQATPIRRLDPSRARTRVIRASEEELAAHMARLAVIEKSAGGPSLWAQ 246
>gi|359455643|ref|ZP_09244854.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20495]
gi|414072015|ref|ZP_11407971.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. Bsw20308]
gi|358047266|dbj|GAA81103.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20495]
gi|410805595|gb|EKS11605.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. Bsw20308]
Length = 237
Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 111/234 (47%), Positives = 154/234 (65%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGNN H YINP R SE+ A+ +HG+T
Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRPSEEEAIDVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL++K F +I F +Y+ +E++IHNA FDVG +D E +LL GY + + + D
Sbjct: 64 EFLRDKPLFHQIAQEFFDYIEGAELVIHNAPFDVGHMDNEFALLNQGYPKTSTFC-EVLD 122
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-K 179
TL MAR +H G++N+LDALC RY++ RTLHG LLD+E+LA+VYLAMT GQ+ LN +
Sbjct: 123 TLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQTKLNLNQ 182
Query: 180 PKINNSNNIETKIKIPNNIPIKL----ANSNELVQHNMILSKIDKHSNGRCIWK 229
K + S + IK N+ L A+ E H L ++K G+C+W+
Sbjct: 183 NKDDGSEQRKGGIKRLNSDRAPLVVLRASDAEQSAHEARLDLVNKEG-GQCLWR 235
>gi|401762404|ref|YP_006577411.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
cloacae ENHKU01]
gi|400173938|gb|AFP68787.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
cloacae ENHKU01]
Length = 243
Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D FL+Y+ +E+IIHNA+FD+GF+D E S L T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFLDYIKGAELIIHNASFDIGFMDYEFSKLHRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQTSMK 186
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + LA+ EL+ H L + K G C+W+
Sbjct: 187 FSMENESQQTQGEAGIQRVVRQASRLRVILASDEELLNHESRLDLVQK-KGGSCMWR 242
>gi|330810139|ref|YP_004354601.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
gi|327378247|gb|AEA69597.1| DNA polymerase III subunit epsilon [Pseudomonas brassicacearum
subsp. brassicacearum NFM421]
Length = 253
Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 160/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFIQGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ ++L +H L I K + +W
Sbjct: 183 GNASDGNGTGEGSGNQATEIRRLPADRQPSRIIRASESDLAEHAARLEAIAKSAGAPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|417700240|ref|ZP_12349387.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-218]
gi|333008996|gb|EGK28455.1| DNA polymerase III, epsilon subunit [Shigella flexneri K-218]
Length = 243
Score = 215 bits (548), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNA FD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAVFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 242
>gi|301021445|ref|ZP_07185469.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1]
gi|300398081|gb|EFJ81619.1| DNA polymerase III, epsilon subunit [Escherichia coli MS 69-1]
Length = 246
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +AR++ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 130 VTDSLAVARRMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILADVYLAMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 245
>gi|183601084|ref|ZP_02962577.1| hypothetical protein PROSTU_04709 [Providencia stuartii ATCC 25827]
gi|386742717|ref|YP_006215896.1| DNA polymerase III subunit epsilon [Providencia stuartii MRSN 2154]
gi|188019425|gb|EDU57465.1| DNA polymerase III, epsilon subunit [Providencia stuartii ATCC
25827]
gi|384479410|gb|AFH93205.1| DNA polymerase III subunit epsilon [Providencia stuartii MRSN 2154]
Length = 253
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 155/238 (65%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F++I D F+ ++ +E+IIHNA FD+GF+D E S L T +
Sbjct: 67 GISDEFLQDKPVFADIADEFIEFIRGAELIIHNAPFDIGFMDYEFSKLNKDIPPTADFCQ 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L+MAR+I GKRN+LDALCDRY I RTLHG LLDAE+LA+VYLAMT GQ++L
Sbjct: 127 ITDSLVMARQIFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILADVYLAMTGGQTSLA 186
Query: 178 FKPKINNSNN--IE--TKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F + + SN +E +I P + + + A EL++H L +DK C+W++
Sbjct: 187 FSMEADTSNESYVEEVQRIDRPVSGLRVLYATDEELIEHEKRLDIVDKKGGKPCLWRQ 244
>gi|161615575|ref|YP_001589540.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|161364939|gb|ABX68707.1| hypothetical protein SPAB_03350 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
Length = 246
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ ++E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVVDEFLDYIRDAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 190 FAMEGETQRQQGEATIQRIVRQASRLRVVFASEEELAAHESRLDLVQK-KGGSCLWR 245
>gi|398855438|ref|ZP_10611931.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM80]
gi|398231457|gb|EJN17445.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM80]
Length = 252
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/242 (43%), Positives = 160/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFNEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQKDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A +EL H + L I K + G +W
Sbjct: 183 GNASDGNGSGEGADNSATEIRRLPADRQPARIIRATEDELAAHLVRLEIIAKSAGGPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|295096912|emb|CBK86002.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae subsp.
cloacae NCTC 9394]
Length = 246
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL NK F+++ D FL+Y+ +E++IHNA+FD+GF+D E S L T +
Sbjct: 70 GIADEFLLNKPTFADVADEFLDYIRGAELVIHNASFDIGFMDYEFSKLNRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQTSMK 189
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ ++ N + + LA+ EL+ H L + K G C+W+
Sbjct: 190 FSMENESQQTRDEGGIQRIVRQANRLRVVLASDEELMNHESRLDLVQK-KGGSCLWR 245
>gi|423094900|ref|ZP_17082696.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens Q2-87]
gi|397886286|gb|EJL02769.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens Q2-87]
Length = 254
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 160/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFIQGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ ++L +H L I K + +W
Sbjct: 183 GNASDGNGTGEGSGNQATEIRRLPADRKPSRIIHASESDLAEHAARLEAIAKSAGAPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|156935271|ref|YP_001439187.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ATCC
BAA-894]
gi|389842119|ref|YP_006344203.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ES15]
gi|424798123|ref|ZP_18223665.1| DNA polymerase III epsilon subunit [Cronobacter sakazakii 696]
gi|156533525|gb|ABU78351.1| hypothetical protein ESA_03124 [Cronobacter sakazakii ATCC BAA-894]
gi|387852595|gb|AFK00693.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii ES15]
gi|423233844|emb|CCK05535.1| DNA polymerase III epsilon subunit [Cronobacter sakazakii 696]
Length = 243
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFMVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL NK F ++VD+FL+Y+ +E++IHNA+FD+GF+D E +L T+ +
Sbjct: 67 GISDEFLMNKPVFGDVVDDFLDYIRGAELVIHNASFDIGFMDYEFGMLNRGIPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 127 ITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQTSIA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGDGQQQQGDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQK-KGGSCLWR 242
>gi|451823301|ref|YP_007459575.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
gi|451776101|gb|AGF47142.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium desouzaii TCC079E]
Length = 236
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/231 (48%), Positives = 152/231 (65%), Gaps = 7/231 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +V D+ETTGL++ GHRIIEIGCVE+ NR ITG +LH Y+NP R+ + ALAIHGLT
Sbjct: 2 RQVVFDLETTGLDVSKGHRIIEIGCVELSNRSITGVDLHLYVNPDREIDPGALAIHGLTN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K KF +IVD FL ++ +EII HNA+FDV FL+ EL L N +Y +I D+L
Sbjct: 62 DFLSDKPKFRDIVDKFLAFIKGAEIIAHNASFDVKFLNYELGKLNLGNLDQYCDKIIDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-----N 177
+AR++ GKRNSLDALCD Y +S + R HG LLD++LL+ V+LAMTRGQ N
Sbjct: 122 SLARELRPGKRNSLDALCDYYGVSNLERKFHGALLDSKLLSHVWLAMTRGQEEFTIVENN 181
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+K K +SN + K + PI A +E+ H+ L + K+++ +W
Sbjct: 182 YKKK-THSNKL-VKDSHHYHCPIIKATKDEINDHHQYLLDMKKNTSEPILW 230
>gi|398978519|ref|ZP_10687842.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM25]
gi|398136919|gb|EJM25993.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM25]
Length = 252
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 160/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F +++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQQDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A EL +H + L I K + +W
Sbjct: 183 GNASDGNGTGEGADNSATEIRRLPADRQPGRIIRATEAELAEHQVRLEIIAKSAGAPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|259909387|ref|YP_002649743.1| DNA polymerase III subunit epsilon [Erwinia pyrifoliae Ep1/96]
gi|387872366|ref|YP_005803747.1| DNA polymerase III subunit epsilon [Erwinia pyrifoliae DSM 12163]
gi|224965009|emb|CAX56539.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae Ep1/96]
gi|283479460|emb|CAY75376.1| DNA polymerase III epsilon subunit [Erwinia pyrifoliae DSM 12163]
Length = 252
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 154/238 (64%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 8 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLIDPEAFGVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G+ +FL +K F++I D+FL Y++ +E++IHNA+FD+GF+D E + L G + T+
Sbjct: 68 GIADEFLLDKPTFAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAK-TETFC 126
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITD+L MARK+ GKRNSLDALC RY I RTLHG LLD+E+LAEV+L MT GQ++L
Sbjct: 127 KITDSLAMARKLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFLTMTGGQTSL 186
Query: 177 NF-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + K I + + + + A+ EL+ H L ++K G C+W+
Sbjct: 187 AFSMEGEREKQQGGETIHRIARPSSGLRVVRASEQELMAHEARLDLVEK-KGGSCLWR 243
>gi|238790133|ref|ZP_04633910.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
33641]
gi|238721802|gb|EEQ13465.1| DNA polymerase III subunit epsilon [Yersinia frederiksenii ATCC
33641]
Length = 259
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 153/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYVKPDRLVDPEAYGVH 71
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I FL ++ +E++IHNAAFD+GF+D E +L T+
Sbjct: 72 GISDEFLADKPTFADITPEFLEFIRGAELVIHNAAFDIGFMDYEFRMLQQDIPKTETFCT 131
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LL+AR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L+
Sbjct: 132 ITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLS 191
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + S N I+ I+ + + I A EL HN L + K G C+W+
Sbjct: 192 FSMEGDQSQNDSSEDIQRIIRPASGLKIIYAADEELEAHNSRLDLVMK-KGGSCLWR 247
>gi|421079737|ref|ZP_15540674.1| DNA-directed DNA polymerase III epsilon subunit [Pectobacterium
wasabiae CFBP 3304]
gi|401705504|gb|EJS95690.1| DNA-directed DNA polymerase III epsilon subunit [Pectobacterium
wasabiae CFBP 3304]
Length = 245
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 112/238 (47%), Positives = 155/238 (65%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG + H YI P R + A IH
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPDRLVDPEAYNIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K +++I D+FL+++ +E++IHNA FD+GF+D E LL T+ +
Sbjct: 67 GISDEFLADKPTYADIADDFLDFIRGAELVIHNATFDIGFMDYESRLLNRDIPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MARKI GKRNSLDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLFMARKIFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLT 186
Query: 178 F------KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + NS I+ ++ + + + A+ EL+ H L I K G C+W+
Sbjct: 187 FSMDGDTQQQNENSETIQRIVRPQSALTVLYADEAELLAHEQRLDLIAK-KGGSCLWR 243
>gi|168238647|ref|ZP_02663705.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|194736138|ref|YP_002113281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|204927010|ref|ZP_03218212.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|374999998|ref|ZP_09724338.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|416424522|ref|ZP_11691703.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|416430793|ref|ZP_11695137.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|416439917|ref|ZP_11700498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|416444725|ref|ZP_11703958.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|416453930|ref|ZP_11710004.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|416458403|ref|ZP_11712922.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|416469920|ref|ZP_11718661.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|416478203|ref|ZP_11721671.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|416484184|ref|ZP_11723980.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|416503146|ref|ZP_11732885.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|416510655|ref|ZP_11737253.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|416513351|ref|ZP_11737917.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|416526476|ref|ZP_11742381.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|416536318|ref|ZP_11748385.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|416542156|ref|ZP_11751326.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|416553718|ref|ZP_11757847.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|416561874|ref|ZP_11761765.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|416568036|ref|ZP_11764475.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|416576505|ref|ZP_11769087.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|416583903|ref|ZP_11773659.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|416595252|ref|ZP_11781066.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|416596423|ref|ZP_11781315.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|416605572|ref|ZP_11787004.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|416610286|ref|ZP_11789958.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|416620853|ref|ZP_11795956.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|416632788|ref|ZP_11801502.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|416639943|ref|ZP_11804857.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|416655695|ref|ZP_11812688.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|416671107|ref|ZP_11820596.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|416678278|ref|ZP_11822583.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|416694074|ref|ZP_11826938.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|416706635|ref|ZP_11831824.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|416713050|ref|ZP_11836692.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|416719619|ref|ZP_11841475.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|416723756|ref|ZP_11844422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|416734338|ref|ZP_11850993.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|416739631|ref|ZP_11853948.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|416745454|ref|ZP_11857386.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|416764569|ref|ZP_11868173.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|416766978|ref|ZP_11869594.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|418484421|ref|ZP_13053419.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|418507351|ref|ZP_13073674.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
gi|418514144|ref|ZP_13080355.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|194711640|gb|ACF90861.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|197288607|gb|EDY27984.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|204323675|gb|EDZ08870.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|322614544|gb|EFY11473.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 315996572]
gi|322620062|gb|EFY16934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-1]
gi|322623357|gb|EFY20196.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-3]
gi|322629345|gb|EFY26124.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 495297-4]
gi|322632065|gb|EFY28819.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-1]
gi|322637197|gb|EFY33899.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 515920-2]
gi|322640310|gb|EFY36970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 531954]
gi|322645923|gb|EFY42443.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. NC_MB110209-0054]
gi|322652378|gb|EFY48732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. OH_2009072675]
gi|322652582|gb|EFY48932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CASC_09SCPH15965]
gi|322660392|gb|EFY56628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 19N]
gi|322664545|gb|EFY60738.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 81038-01]
gi|322669402|gb|EFY65552.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MD_MDA09249507]
gi|322670948|gb|EFY67081.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 414877]
gi|322678813|gb|EFY74868.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 366867]
gi|322681842|gb|EFY77867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 413180]
gi|322687968|gb|EFY83934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 446600]
gi|323194322|gb|EFZ79517.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 609458-1]
gi|323197738|gb|EFZ82870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 556150-1]
gi|323203466|gb|EFZ88491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 609460]
gi|323213392|gb|EFZ98193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 556152]
gi|323214685|gb|EFZ99436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB101509-0077]
gi|323221462|gb|EGA05878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB102109-0047]
gi|323226220|gb|EGA10436.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB110209-0055]
gi|323229992|gb|EGA14112.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. MB111609-0052]
gi|323233731|gb|EGA17820.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009083312]
gi|323238575|gb|EGA22633.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 2009085258]
gi|323244263|gb|EGA28272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 315731156]
gi|323246424|gb|EGA30407.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2009159199]
gi|323252193|gb|EGA36046.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008282]
gi|323258046|gb|EGA41725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008283]
gi|323265129|gb|EGA48628.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008285]
gi|323272692|gb|EGA56099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008287]
gi|353074686|gb|EHB40446.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|363549324|gb|EHL33681.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB31]
gi|363557528|gb|EHL41733.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. LQC 10]
gi|363562362|gb|EHL46461.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 29N]
gi|363565424|gb|EHL49460.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. SARB30]
gi|363568279|gb|EHL52267.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. ATCC BAA710]
gi|363573613|gb|EHL57491.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 42N]
gi|363578138|gb|EHL61954.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 4441 H]
gi|366058665|gb|EHN22948.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 80959-06]
gi|366079964|gb|EHN43945.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Pomona str. ATCC 10729]
gi|366081419|gb|EHN45364.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035327]
Length = 246
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 190 FAMEGETQRQQGEETIQRIVRQASRLRVVFASDEELAAHESRLDLVQK-KGGSCLWR 245
>gi|215485371|ref|YP_002327802.1| DNA polymerase III subunit epsilon [Escherichia coli O127:H6 str.
E2348/69]
gi|312964723|ref|ZP_07778974.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75]
gi|417754058|ref|ZP_12402153.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2B]
gi|418995281|ref|ZP_13542900.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1A]
gi|419000413|ref|ZP_13547975.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1B]
gi|419005950|ref|ZP_13553406.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1C]
gi|419011773|ref|ZP_13559142.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1D]
gi|419016717|ref|ZP_13564043.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1E]
gi|419022298|ref|ZP_13569546.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2A]
gi|419027224|ref|ZP_13574424.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2C]
gi|419033201|ref|ZP_13580299.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2D]
gi|419038006|ref|ZP_13585066.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2E]
gi|425276090|ref|ZP_18667439.1| DNA polymerase III, epsilon subunit [Escherichia coli ARS4.2123]
gi|425298388|ref|ZP_18688442.1| DNA polymerase III, epsilon subunit [Escherichia coli 07798]
gi|215263443|emb|CAS07763.1| DNA polymerase III, epsilon subunit [Escherichia coli O127:H6 str.
E2348/69]
gi|312290744|gb|EFR18622.1| DNA polymerase III, epsilon subunit [Escherichia coli 2362-75]
gi|377850223|gb|EHU15190.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1A]
gi|377850751|gb|EHU15706.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1C]
gi|377853903|gb|EHU18793.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1B]
gi|377864496|gb|EHU29292.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1D]
gi|377866691|gb|EHU31455.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC1E]
gi|377868780|gb|EHU33507.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2A]
gi|377879004|gb|EHU43577.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2B]
gi|377883620|gb|EHU48138.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2D]
gi|377885726|gb|EHU50217.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2C]
gi|377898250|gb|EHU62610.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC2E]
gi|408207518|gb|EKI32256.1| DNA polymerase III, epsilon subunit [Escherichia coli ARS4.2123]
gi|408221906|gb|EKI45829.1| DNA polymerase III, epsilon subunit [Escherichia coli 07798]
Length = 243
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNA FD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNATFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGTCLWR 242
>gi|339998273|ref|YP_004729156.1| DNA polymerase III subunit epsilon [Salmonella bongori NCTC 12419]
gi|339511634|emb|CCC29343.1| DNA polymerase III epsilon subunit [Salmonella bongori NCTC 12419]
Length = 243
Score = 215 bits (548), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E +LL T +
Sbjct: 67 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFALLKRDIPKTSTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQTSMT 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 187 FAMEGETQRQQGEETIQRIVRQASRLRVVFASDEELAAHESRLDLVQK-KGGSCLWR 242
>gi|407364622|ref|ZP_11111154.1| DNA polymerase III subunit epsilon [Pseudomonas mandelii JR-1]
Length = 252
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 161/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFTEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ ++L +H L I K + +W
Sbjct: 183 GNASDGNGSGEGADNSATEIRRLPADRQPTRIIPASEDDLARHVARLEAIAKSAGAPSLW 242
Query: 229 KK 230
++
Sbjct: 243 QQ 244
>gi|167995093|ref|ZP_02576183.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|168232195|ref|ZP_02657253.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168239998|ref|ZP_02664930.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168261338|ref|ZP_02683311.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168465317|ref|ZP_02699199.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819164|ref|ZP_02831164.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194445947|ref|YP_002039498.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194449519|ref|YP_002044248.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194471875|ref|ZP_03077859.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|197248793|ref|YP_002145264.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197263319|ref|ZP_03163393.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|198244203|ref|YP_002214220.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|200389565|ref|ZP_03216176.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|213419655|ref|ZP_03352721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. E01-6750]
gi|213428417|ref|ZP_03361167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. E02-1180]
gi|213646369|ref|ZP_03376422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. J185]
gi|213852644|ref|ZP_03382176.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. M223]
gi|289828784|ref|ZP_06546543.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. E98-3139]
gi|374979753|ref|ZP_09721085.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|375117697|ref|ZP_09762864.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|375122373|ref|ZP_09767537.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|378956354|ref|YP_005213841.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|378960777|ref|YP_005218263.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|378982801|ref|YP_005245956.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|379699480|ref|YP_005241208.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|383495082|ref|YP_005395771.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|386590150|ref|YP_006086550.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|409248685|ref|YP_006884525.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|417324129|ref|ZP_12110463.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|417339423|ref|ZP_12120990.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|417371048|ref|ZP_12141731.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|418761040|ref|ZP_13317189.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|418767868|ref|ZP_13323925.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|418770914|ref|ZP_13326933.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|418775277|ref|ZP_13331236.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|418781542|ref|ZP_13337424.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|418782704|ref|ZP_13338564.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|418791187|ref|ZP_13346950.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|418793687|ref|ZP_13349413.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|418799733|ref|ZP_13355399.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|418803919|ref|ZP_13359532.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|418807406|ref|ZP_13362964.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|418811947|ref|ZP_13367471.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|418824465|ref|ZP_13379825.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|418831583|ref|ZP_13386533.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|418835585|ref|ZP_13390476.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|418838568|ref|ZP_13393410.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|418845953|ref|ZP_13400730.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|418848772|ref|ZP_13403507.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|418855004|ref|ZP_13409667.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|418858354|ref|ZP_13412970.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|418864095|ref|ZP_13418630.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|418869421|ref|ZP_13423857.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
gi|419790870|ref|ZP_14316537.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|419794165|ref|ZP_14319781.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|421882985|ref|ZP_16314232.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|194404610|gb|ACF64832.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|194407823|gb|ACF68042.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194458239|gb|EDX47078.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|195631798|gb|EDX50318.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197212496|gb|ACH49893.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197241574|gb|EDY24194.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|197938719|gb|ACH76052.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|199602010|gb|EDZ00556.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|205327163|gb|EDZ13927.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|205333347|gb|EDZ20111.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205339912|gb|EDZ26676.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205344083|gb|EDZ30847.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205349720|gb|EDZ36351.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|312911229|dbj|BAJ35203.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. T000240]
gi|320084513|emb|CBY94305.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|321224918|gb|EFX49979.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|323128579|gb|ADX16009.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. ST4/74]
gi|326621964|gb|EGE28309.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|326626623|gb|EGE32966.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. SG9]
gi|353579778|gb|EHC41237.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|353609171|gb|EHC62555.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|357206965|gb|AET55011.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Gallinarum/pullorum str. RKS5078]
gi|357960391|gb|EHJ84247.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|374354649|gb|AEZ46410.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. P-stx-12]
gi|379987407|emb|CCF86505.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Senftenberg str. SS209]
gi|380461903|gb|AFD57306.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|383797194|gb|AFH44276.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392612749|gb|EIW95217.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. Levine 1]
gi|392616255|gb|EIW98690.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. Levine 15]
gi|392733088|gb|EIZ90292.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35199]
gi|392735923|gb|EIZ93092.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21539]
gi|392741445|gb|EIZ98548.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35185]
gi|392746874|gb|EJA03878.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35188]
gi|392748780|gb|EJA05762.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 33953]
gi|392755276|gb|EJA12186.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19447]
gi|392759519|gb|EJA16371.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21559]
gi|392763367|gb|EJA20174.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19449]
gi|392764051|gb|EJA20857.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19567]
gi|392772013|gb|EJA28721.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 35202]
gi|392776687|gb|EJA33373.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22513]
gi|392778669|gb|EJA35340.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21550]
gi|392798480|gb|EJA54751.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM N18486]
gi|392802860|gb|EJA59061.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM N1543]
gi|392811955|gb|EJA67953.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19443]
gi|392814394|gb|EJA70345.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21554]
gi|392822119|gb|EJA77931.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 37978]
gi|392822553|gb|EJA78363.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22462]
gi|392823178|gb|EJA78981.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19593]
gi|392831356|gb|EJA86989.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19536]
gi|392832756|gb|EJA88372.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 19470]
gi|392836569|gb|EJA92151.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 4176]
Length = 246
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 190 FAMEGETQRQQGEATIQRIVRQASRLRVVFASEEELAAHESRLDLVQK-KGGSCLWR 245
>gi|392551908|ref|ZP_10299045.1| DNA polymerase III subunit epsilon [Pseudoalteromonas spongiae
UST010723-006]
Length = 238
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/233 (47%), Positives = 152/233 (65%), Gaps = 8/233 (3%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
HR IVLD ETTG++ GHRIIEIGCVE+ NR++TGNN H YI+P RD E A+ +HG+T
Sbjct: 3 HRQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYIDPERDIEDEAIFVHGIT 62
Query: 62 TKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--IYRIT 119
FL K KF ++ FL+Y+ E++IHNAAFDVGF+D E +LL N+ K + ++
Sbjct: 63 RDFLAGKPKFRDVAAEFLDYIKGGELVIHNAAFDVGFMDHEFALL-RQNYPKTHDVCQVL 121
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MAR +H G++N+LDALC RY+I RTLHG LLD+E+LA+VYL MT GQ +LN
Sbjct: 122 DTLAMARDLHPGQKNNLDALCRRYDIDNSKRTLHGALLDSEILADVYLGMTGGQVSLNLA 181
Query: 180 PKINNSNNIETKI-KIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIW 228
K S + I ++ + P + A++ E H L+ ++ G C+W
Sbjct: 182 NKEGQSGDNSKGIRRLSPDRPRLNVVFADNEEQAAHLERLNLVND-KGGHCLW 233
>gi|416015412|ref|ZP_11563019.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
glycinea str. B076]
gi|320325171|gb|EFW81239.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
glycinea str. B076]
Length = 259
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 157/240 (65%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS-IL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINN---------SNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ + E + + P ++ A+ +EL +H + +S I K S +W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPALW 247
>gi|312883833|ref|ZP_07743552.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
BAA-2122]
gi|309368582|gb|EFP96115.1| DNA polymerase III subunit epsilon [Vibrio caribbenthicus ATCC
BAA-2122]
Length = 244
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 154/237 (64%), Gaps = 11/237 (4%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
HR IVLD ETTG+N+ GHRIIEIG VEI NR++TG + H YI P RD + A+
Sbjct: 10 HRIIVLDTETTGMNLEGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPDRDIQAEAVG 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYI 115
+HG+T +FL++K ++ ++ FL +++ +E++ HNA+FDVGF+D E S+L S T
Sbjct: 70 VHGITDEFLRDKPEYKDVHAEFLAFINGAELVAHNASFDVGFMDYEFSMLDASIGKTAQY 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSNNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L F + +E+ + + + A ++E+ H L I+K NG C+W+
Sbjct: 190 LQFNAGSASEEGVESIKRAAQGRKALKVLRATADEIDAHEKRLELIEK--NGHCLWR 244
>gi|16759250|ref|NP_454867.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. CT18]
gi|16763647|ref|NP_459262.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|29142975|ref|NP_806317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56414616|ref|YP_151691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197363544|ref|YP_002143181.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|205351595|ref|YP_002225396.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|207855776|ref|YP_002242427.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|378443710|ref|YP_005231342.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|378448573|ref|YP_005235932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|378698237|ref|YP_005180194.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378987663|ref|YP_005250827.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|418815308|ref|ZP_13370809.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|418821510|ref|ZP_13376935.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|419727364|ref|ZP_14254332.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|419733666|ref|ZP_14260561.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|419741443|ref|ZP_14268138.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|419745441|ref|ZP_14272073.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|419749381|ref|ZP_14275863.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|421357931|ref|ZP_15808239.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|421365079|ref|ZP_15815301.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|421369150|ref|ZP_15819334.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|421372595|ref|ZP_15822744.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|421376207|ref|ZP_15826316.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|421380778|ref|ZP_15830840.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|421384143|ref|ZP_15834172.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|421392642|ref|ZP_15842599.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|421395841|ref|ZP_15845773.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|421398501|ref|ZP_15848406.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|421405318|ref|ZP_15855153.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|421407918|ref|ZP_15857725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|421414008|ref|ZP_15863754.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|421419606|ref|ZP_15869298.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|421423718|ref|ZP_15873369.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|421425471|ref|ZP_15875106.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|421429819|ref|ZP_15879413.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|421435150|ref|ZP_15884691.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|421440907|ref|ZP_15890382.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|421445694|ref|ZP_15895115.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|421451354|ref|ZP_15900720.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|421572799|ref|ZP_16018445.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|421577706|ref|ZP_16023294.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|421582296|ref|ZP_16027837.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|421584304|ref|ZP_16029812.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|422024385|ref|ZP_16370870.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|422029403|ref|ZP_16375667.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|427545177|ref|ZP_18926175.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|427560987|ref|ZP_18930940.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|427598994|ref|ZP_18940160.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|427602219|ref|ZP_18940541.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|427626624|ref|ZP_18945449.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|427649819|ref|ZP_18950204.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|427659602|ref|ZP_18955157.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|427664719|ref|ZP_18959904.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|427693514|ref|ZP_18964798.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|436618860|ref|ZP_20514509.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|436725665|ref|ZP_20519057.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|436803136|ref|ZP_20525634.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|436810434|ref|ZP_20529472.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436813819|ref|ZP_20532007.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436831543|ref|ZP_20536211.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436849619|ref|ZP_20540756.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436856031|ref|ZP_20545136.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436863018|ref|ZP_20549561.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436871492|ref|ZP_20554666.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436878643|ref|ZP_20559062.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436886758|ref|ZP_20563164.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436894575|ref|ZP_20568053.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436904702|ref|ZP_20574719.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436909823|ref|ZP_20576408.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436918075|ref|ZP_20581246.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436925703|ref|ZP_20586135.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436934117|ref|ZP_20590121.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436941458|ref|ZP_20595018.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436949448|ref|ZP_20599462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436959501|ref|ZP_20603698.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436975281|ref|ZP_20611557.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436987028|ref|ZP_20615672.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436999564|ref|ZP_20620137.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437009885|ref|ZP_20623865.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437018320|ref|ZP_20626812.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437035396|ref|ZP_20633322.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437046757|ref|ZP_20638573.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437049508|ref|ZP_20640128.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437056679|ref|ZP_20644047.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437065132|ref|ZP_20648817.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437079091|ref|ZP_20656585.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437082113|ref|ZP_20658188.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437090138|ref|ZP_20662710.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|437115067|ref|ZP_20669289.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|437122707|ref|ZP_20672549.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|437132810|ref|ZP_20678260.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|437137918|ref|ZP_20680713.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|437149231|ref|ZP_20688104.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|437151812|ref|ZP_20689483.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|437160764|ref|ZP_20694837.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|437169479|ref|ZP_20699799.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|437176674|ref|ZP_20703478.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|437181988|ref|ZP_20706747.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|437259542|ref|ZP_20717062.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|437272554|ref|ZP_20724304.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|437276723|ref|ZP_20726537.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|437288192|ref|ZP_20730526.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|437309690|ref|ZP_20735618.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|437328986|ref|ZP_20741076.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|437338685|ref|ZP_20743890.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|437381079|ref|ZP_20750323.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|437413061|ref|ZP_20753483.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|437456111|ref|ZP_20760230.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|437470170|ref|ZP_20765185.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|437485113|ref|ZP_20769225.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|437499212|ref|ZP_20774021.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|437513693|ref|ZP_20777671.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|437531220|ref|ZP_20780700.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|437554585|ref|ZP_20784357.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|437571530|ref|ZP_20788639.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|437586099|ref|ZP_20793186.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|437602530|ref|ZP_20798537.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|437625872|ref|ZP_20805725.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|437643076|ref|ZP_20808338.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|437664550|ref|ZP_20814353.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|437675750|ref|ZP_20816818.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|437699331|ref|ZP_20823460.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|437786548|ref|ZP_20836863.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|437802331|ref|ZP_20838296.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|437820257|ref|ZP_20843153.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|438064947|ref|ZP_20856857.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|438090855|ref|ZP_20860684.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|438105098|ref|ZP_20866164.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|438114623|ref|ZP_20870239.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|438121370|ref|ZP_20872158.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|440770374|ref|ZP_20949324.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|440771995|ref|ZP_20950905.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|445131445|ref|ZP_21381743.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|445144010|ref|ZP_21386759.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|445153374|ref|ZP_21391369.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|445175254|ref|ZP_21397321.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|445215177|ref|ZP_21401823.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|445233445|ref|ZP_21406414.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|445296812|ref|ZP_21411276.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|445339258|ref|ZP_21416320.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|445343690|ref|ZP_21417159.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|445362404|ref|ZP_21424164.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
gi|60392203|sp|P0A1G9.1|DPO3E_SALTY RecName: Full=DNA polymerase III subunit epsilon
gi|60392204|sp|P0A1H0.1|DPO3E_SALTI RecName: Full=DNA polymerase III subunit epsilon
gi|25299960|pir||AF0534 DNA polymerase III epsilon chain [imported] - Salmonella enterica
subsp. enterica serovar Typhi (strain CT18)
gi|1172157|gb|AAA86422.1| dnaQ, partial [Salmonella enterica subsp. enterica serovar
Typhimurium]
gi|1794290|gb|AAC44792.1| DNA polymerase III epsilon chain [Salmonella enterica subsp.
enterica serovar Typhimurium]
gi|16418764|gb|AAL19221.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. LT2]
gi|16501541|emb|CAD08718.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhi]
gi|29138607|gb|AAO70177.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhi str. Ty2]
gi|56128873|gb|AAV78379.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. ATCC 9150]
gi|197095021|emb|CAR60567.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Paratyphi A str. AKU_12601]
gi|205271376|emb|CAR36169.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Gallinarum str. 287/91]
gi|206707579|emb|CAR31853.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Enteritidis str. P125109]
gi|261245489|emb|CBG23279.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. D23580]
gi|267991951|gb|ACY86836.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. 14028S]
gi|301156885|emb|CBW16361.1| DNA polymerase III epsilon subunit [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|332987210|gb|AEF06193.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. UK-1]
gi|381291699|gb|EIC32932.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41573]
gi|381298853|gb|EIC39927.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41563]
gi|381300946|gb|EIC42002.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41579]
gi|381305520|gb|EIC46430.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41566]
gi|381311455|gb|EIC52272.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. 41565]
gi|392791105|gb|EJA47598.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 22425]
gi|392791760|gb|EJA48228.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Newport str. CVM 21538]
gi|395980590|gb|EJH89813.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639016-6]
gi|395983445|gb|EJH92638.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 640631]
gi|395990168|gb|EJH99300.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 622731-39]
gi|396000245|gb|EJI09260.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-0424]
gi|396003434|gb|EJI12422.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-6]
gi|396003827|gb|EJI12814.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 485549-17]
gi|396008203|gb|EJI17138.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-70]
gi|396010885|gb|EJI19796.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-26]
gi|396020705|gb|EJI29546.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 596866-22]
gi|396024629|gb|EJI33415.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-46]
gi|396029850|gb|EJI38586.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 639672-50]
gi|396030291|gb|EJI39025.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629164-37]
gi|396035746|gb|EJI44418.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-2659]
gi|396035766|gb|EJI44437.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 78-1757]
gi|396037102|gb|EJI45753.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 77-1427]
gi|396056742|gb|EJI65215.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22510-1]
gi|396057136|gb|EJI65608.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 8b-1]
gi|396058233|gb|EJI66699.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648905 5-18]
gi|396064109|gb|EJI72497.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 58-6482]
gi|396064129|gb|EJI72516.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-3079]
gi|396065846|gb|EJI74214.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 6-18]
gi|402515733|gb|EJW23147.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00326]
gi|402516294|gb|EJW23707.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00325]
gi|402516625|gb|EJW24036.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00322]
gi|402530822|gb|EJW38035.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Heidelberg str. CFSAN00328]
gi|414023908|gb|EKT07319.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm1]
gi|414024252|gb|EKT07644.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm8]
gi|414025785|gb|EKT09085.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm2]
gi|414025811|gb|EKT09110.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm3]
gi|414037902|gb|EKT20639.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm9]
gi|414042904|gb|EKT25428.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm4]
gi|414052328|gb|EKT34380.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm10]
gi|414053737|gb|EKT35715.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm6]
gi|414058099|gb|EKT39806.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm11]
gi|414062078|gb|EKT43434.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm12]
gi|414067628|gb|EKT47944.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhimurium str. STm5]
gi|434943276|gb|ELL49423.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Pullorum str. ATCC 9120]
gi|434956810|gb|ELL50516.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS44]
gi|434964926|gb|ELL57889.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434965616|gb|ELL58554.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22704]
gi|434975327|gb|ELL67637.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434982500|gb|ELL74323.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434983683|gb|ELL75471.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE30663]
gi|434988196|gb|ELL79795.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434991464|gb|ELL82952.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434997545|gb|ELL88784.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1543]
gi|435000707|gb|ELL91829.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435007319|gb|ELL98172.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435011290|gb|ELM02010.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435017224|gb|ELM07732.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435018389|gb|ELM08864.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435028196|gb|ELM18275.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435030807|gb|ELM20796.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435040096|gb|ELM29865.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435041257|gb|ELM30999.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435045289|gb|ELM34934.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435050232|gb|ELM39737.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435054146|gb|ELM43582.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435054166|gb|ELM43601.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435059609|gb|ELM48884.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435060105|gb|ELM49375.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435066785|gb|ELM55856.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435074763|gb|ELM63586.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435078227|gb|ELM66971.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435081912|gb|ELM70553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435096197|gb|ELM84469.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435097046|gb|ELM85308.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435099780|gb|ELM87971.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435101447|gb|ELM89601.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435111281|gb|ELM99186.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435115156|gb|ELN02946.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 576709]
gi|435115313|gb|ELN03084.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 635290-58]
gi|435122357|gb|ELN09879.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-19]
gi|435123533|gb|ELN11026.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-16]
gi|435131040|gb|ELN18268.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607308-9]
gi|435134552|gb|ELN21680.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 607307-2]
gi|435143285|gb|ELN30151.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 629163]
gi|435146277|gb|ELN33070.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE15-1]
gi|435148338|gb|ELN35065.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_N202]
gi|435155399|gb|ELN41943.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_56-3991]
gi|435164930|gb|ELN50990.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_81-2490]
gi|435165460|gb|ELN51500.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_76-3618]
gi|435167886|gb|ELN53739.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL909]
gi|435173564|gb|ELN59061.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SL913]
gi|435183592|gb|ELN68553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CVM_69-4941]
gi|435185180|gb|ELN70068.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 638970-15]
gi|435190517|gb|ELN75099.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 17927]
gi|435196076|gb|ELN80432.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. CHS4]
gi|435203096|gb|ELN86882.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 22-17]
gi|435203178|gb|ELN86962.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 22558]
gi|435206818|gb|ELN90310.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 40-18]
gi|435215055|gb|ELN97803.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 1-1]
gi|435216288|gb|ELN98763.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 4-1]
gi|435224135|gb|ELO06119.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642046 4-7]
gi|435230330|gb|ELO11664.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648898 4-5]
gi|435243461|gb|ELO23718.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648900 1-16]
gi|435243944|gb|ELO24198.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648899 3-17]
gi|435247983|gb|ELO27904.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 1-17]
gi|435252639|gb|ELO32167.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648903 1-6]
gi|435260218|gb|ELO39431.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648902 6-8]
gi|435260370|gb|ELO39569.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 39-2]
gi|435265678|gb|ELO44483.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 653049 13-19]
gi|435274583|gb|ELO52685.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 561362 9-7]
gi|435275111|gb|ELO53198.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648904 3-6]
gi|435277364|gb|ELO55317.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 642044 8-1]
gi|435296692|gb|ELO73054.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 76-2651]
gi|435303689|gb|ELO79528.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 33944]
gi|435307206|gb|ELO82390.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SARB17]
gi|435312881|gb|ELO86695.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 50-5646]
gi|435316192|gb|ELO89383.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 81-2625]
gi|435321707|gb|ELO94098.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 62-1976]
gi|435329022|gb|ELP00480.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 53-407]
gi|436411518|gb|ELP09467.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Agona str. SH08SF124]
gi|436420223|gb|ELP18091.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Agona str. SH10GFN094]
gi|444847150|gb|ELX72300.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. SL1438]
gi|444850271|gb|ELX75373.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Gallinarum str. 9184]
gi|444852582|gb|ELX77659.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Dublin str. HWS51]
gi|444858592|gb|ELX83575.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE8a]
gi|444859331|gb|ELX84281.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 20037]
gi|444861308|gb|ELX86192.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. SE10]
gi|444872474|gb|ELX96813.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 18569]
gi|444881494|gb|ELY05538.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13-1]
gi|444882485|gb|ELY06448.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 436]
gi|444884083|gb|ELY07927.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. PT23]
Length = 243
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 67 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 187 FAMEGETQRQQGEATIQRIVRQASRLRVVFASEEELAAHESRLDLVQK-KGGSCLWR 242
>gi|422397059|ref|ZP_16477013.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330882898|gb|EGH17047.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 259
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 158/240 (65%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RAVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS-IL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINNSNNIETKI--------KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N ++P + P ++ A+ +EL +H + +S I K S +W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPALW 247
>gi|416648318|ref|ZP_11808963.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|416759300|ref|ZP_11864161.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|418486181|ref|ZP_13055153.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|418493340|ref|ZP_13059808.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|418497916|ref|ZP_13064331.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|418504211|ref|ZP_13070569.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|418525432|ref|ZP_13091412.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|452121435|ref|YP_007471683.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
gi|323259856|gb|EGA43487.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008284]
gi|366065515|gb|EHN29705.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035318]
gi|366071053|gb|EHN35153.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035321]
gi|366073693|gb|EHN37757.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035320]
gi|366076798|gb|EHN40833.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. CT_02035278]
gi|366829312|gb|EHN56188.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. 507440-20]
gi|372206201|gb|EHP19705.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Montevideo str. IA_2010008286]
gi|451910439|gb|AGF82245.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Javiana str. CFSAN001992]
Length = 243
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 67 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 187 FAMEGETQRQQGEETIQRIVRQASRLRVVFASDEELAAHESRLDLVQK-KGGSCLWR 242
>gi|317047021|ref|YP_004114669.1| DNA polymerase III subunit epsilon [Pantoea sp. At-9b]
gi|316948638|gb|ADU68113.1| DNA polymerase III, epsilon subunit [Pantoea sp. At-9b]
Length = 243
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHIYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K FS+I D FL+Y+ +E++IHNA+FD+GF+D E ++L T +
Sbjct: 67 GIADEFLADKPSFSDIADEFLDYIRGAELVIHNASFDIGFMDYEFAMLKRDIGKTDTFCQ 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L MARK+ GKRNSLDALC R I RTLHG LLDAE+LAEV+L +T GQ++L
Sbjct: 127 VTDSLAMARKMFPGKRNSLDALCSRLEIDNSKRTLHGALLDAEILAEVFLTLTGGQTSLA 186
Query: 178 FKPKINNSN-----NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + SN NI+ ++ + + + A+ E + H L + K G C+W+
Sbjct: 187 FSMESEQSNQVDGENIQRIVRPASGLRVVSASDEECLAHESRLDLVMK-KGGSCLWR 242
>gi|423697790|ref|ZP_17672280.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens
Q8r1-96]
gi|388004807|gb|EIK66074.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens
Q8r1-96]
Length = 253
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 160/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFIRGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ ++L +H L I K + +W
Sbjct: 183 GNASDGNGTGEGSGNQATEIRRLPADRQPSRIIRASESDLAEHAARLEAIAKSAGAPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|62178830|ref|YP_215247.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224582105|ref|YP_002635903.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|375113135|ref|ZP_09758305.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
gi|62126463|gb|AAX64166.1| DNA polymerase III, epsilon subunit, 3-5 exonucleolytic
proofreading function [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SC-B67]
gi|224466632|gb|ACN44462.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Paratyphi C strain RKS4594]
gi|322713281|gb|EFZ04852.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Choleraesuis str. SCSA50]
Length = 246
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAMEGETQRQQGEATIQRIVRQASRLRVVFATEEELAAHESRLDLVQK-KGGSCLWR 245
>gi|389683786|ref|ZP_10175117.1| DNA polymerase III, epsilon subunit [Pseudomonas chlororaphis O6]
gi|388552125|gb|EIM15387.1| DNA polymerase III, epsilon subunit [Pseudomonas chlororaphis O6]
Length = 252
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 154/241 (63%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFIQGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTLLMAR+ H G+RNSLDALC RY++ R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLLMARERHPGQRNSLDALCKRYDVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSNNIETKIKIPNNI----------PIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ N E + I + A+ EL +H + L I K + +W
Sbjct: 183 GNASDGNGSEGSGNRASEIRRLSADRQRGRVIRASEAELAEHQVRLEIIAKSAGAPALWT 242
Query: 230 K 230
+
Sbjct: 243 Q 243
>gi|423138814|ref|ZP_17126452.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|379051368|gb|EHY69259.1| DNA polymerase III, epsilon subunit [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
Length = 246
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 190 FAMEGETQRQQGEATIQRIVRQASRLRVVFASDEELAAHESRLDLVQK-KGGSCLWR 245
>gi|110834086|ref|YP_692945.1| DNA polymerase III subunit epsilon [Alcanivorax borkumensis SK2]
gi|110647197|emb|CAL16673.1| DNA polymerase III, epsilon subunit [Alcanivorax borkumensis SK2]
Length = 247
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 157/235 (66%), Gaps = 8/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL DGHR+IEIGCVE++NR++TGN+LH Y+NP R+ + ALA+HG+++
Sbjct: 2 RQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNSLHLYLNPEREIDAGALAVHGISS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFT-KYIYRITDT 121
+FL +K F ++VD FL +V +E++IHNA FDVGFL+ EL LG T + + DT
Sbjct: 62 EFLADKPTFDKVVDEFLAFVDGAELVIHNAPFDVGFLNHELRRLGTRYGTIEQRCGVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL----N 177
L+MAR+ H G++NSLDALC RY + HR LHG LLDAE+LA+VYLAMT GQ+ L N
Sbjct: 122 LVMARQKHPGQKNSLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLFSGGN 181
Query: 178 FKPKINNSNNIETKIKI-PNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ET ++ + +P+ + A+ NE +H L+ I K + +W+
Sbjct: 182 DSSERGGGAAAETIRRLSADRVPLCVVRASENEQQRHRNKLAAIAKKNGVPTVWQ 236
>gi|335042038|ref|ZP_08535065.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
[Methylophaga aminisulfidivorans MP]
gi|333788652|gb|EGL54534.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
[Methylophaga aminisulfidivorans MP]
Length = 247
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 148/237 (62%), Gaps = 12/237 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG++ + HRIIEIGCVE+ NR++TG H YINP R+ + A+ +HG+T
Sbjct: 8 RQVILDTETTGISTAEDHRIIEIGCVEMVNRRLTGQTFHQYINPHREIDAGAIEVHGITN 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMEL-SLLGYSNFTKYIYRITDT 121
+FL +K F +I ++FL ++ +E+IIHNA FDVGF+D EL L G + + + DT
Sbjct: 68 EFLADKPSFEDIAEDFLQFIEGAELIIHNAPFDVGFIDHELKKLSGENRRVNSLCTVLDT 127
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-------- 173
L MAR H G++N+LDALC RY++ +R LHG LLDAE+LA+VYLAMT GQ
Sbjct: 128 LKMARDKHPGQKNNLDALCKRYDVDNSNRELHGALLDAEILADVYLAMTGGQVSMLLAAN 187
Query: 174 --SNLNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ P + + + +K N+ + A+ EL H +L K+ K S G C+W
Sbjct: 188 EEETVTSTPSGSEAEEVIATVK-SRNLKVIRASEEELAAHEAMLEKVQKSSGGECVW 243
>gi|386014775|ref|YP_005933052.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355]
gi|327392834|dbj|BAK10256.1| DNA polymerase III epsilon subunit DnaQ [Pantoea ananatis AJ13355]
Length = 243
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 113/238 (47%), Positives = 154/238 (64%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K FS+I D FL+Y+ +E++IHNA+FD+GF+D E L T+ +
Sbjct: 67 GIADEFLLDKPTFSDIADEFLDYIRGAELVIHNASFDIGFMDYEFGKLQRGIEKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MAR++ GKRNSLDALC RY I RTLHG LLDAE+LAEV L MT GQ++L+
Sbjct: 127 ITDSLAMARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVLLTMTGGQTSLS 186
Query: 178 F-----KPKINNSNNIETKIKIPNN-IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + S I+ +I PN+ + + A+ E+ QH L I K G C+W+
Sbjct: 187 FSSEEERARQQQSEGIQ-RIARPNSGLRVVTASDEEVNQHESRLDLIMK-KGGSCLWR 242
>gi|417082577|ref|ZP_11950848.1| DNA polymerase III subunit epsilon [Escherichia coli cloneA_i1]
gi|355353349|gb|EHG02518.1| DNA polymerase III subunit epsilon [Escherichia coli cloneA_i1]
Length = 243
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL + F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDNPAFAELADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGETTIQRIVRQASKLRVVFATDEELAAHEARLDLVQK-KGGSCLWR 242
>gi|345864986|ref|ZP_08817180.1| DNA polymerase III subunit epsilon [endosymbiont of Tevnia
jerichonana (vent Tica)]
gi|345878065|ref|ZP_08829793.1| CTP synthase [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|344224925|gb|EGV51300.1| CTP synthase [endosymbiont of Riftia pachyptila (vent Ph05)]
gi|345123924|gb|EGW53810.1| DNA polymerase III subunit epsilon [endosymbiont of Tevnia
jerichonana (vent Tica)]
Length = 238
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 159/236 (67%), Gaps = 12/236 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRIIEIGCVE+ +R+++GNN H Y+ P R+ + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEPQQGHRIIEIGCVEMIDRRLSGNNFHQYLQPDREIDAGAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY-SNFTKYIYRITDT 121
+FL +K +F+++ +FL+Y+ +E+IIHNA FDVGFL+ EL L+G S + + DT
Sbjct: 62 EFLADKPRFADLAADFLDYIRGAELIIHNAPFDVGFLNHELQLMGADSPPIGELCAVIDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF--- 178
L+MA+K+H G+RNSLDALC RY++ R LHG LLDAE+LA+VYLAMT GQ+ L+
Sbjct: 122 LVMAKKMHPGQRNSLDALCKRYDVDNTQRELHGALLDAEILADVYLAMTGGQATLSLEMT 181
Query: 179 KPKINNSNNIETKI-KIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + ++ +++ I ++ P + AN+ EL H ++++ G CIW+K
Sbjct: 182 RAEGESTGDVDGGIRRLSAGRPALKVVKANAVELELHE---ARLEAMGEG-CIWRK 233
>gi|429114122|ref|ZP_19175040.1| DNA polymerase III epsilon subunit [Cronobacter sakazakii 701]
gi|426317251|emb|CCK01153.1| DNA polymerase III epsilon subunit [Cronobacter sakazakii 701]
Length = 276
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFMVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL NK F ++VD+FL+Y+ +E++IHNA+FD+GF+D E +L T +
Sbjct: 67 GISDEFLMNKPVFGDVVDDFLDYIRGAELVIHNASFDIGFMDYEFGMLNRGIPKTDTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 127 ITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQTSIA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGDGQQQQGDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQK-KGGSCLWR 242
>gi|378951536|ref|YP_005209024.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens F113]
gi|359761550|gb|AEV63629.1| DNA polymerase III epsilon subunit [Pseudomonas fluorescens F113]
Length = 253
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/242 (42%), Positives = 159/242 (65%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFIQGAQLIIHNAAFDVGFINNEFALMGQHDRADITQHCT-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N ++I ++P P ++ A+ ++L +H L I K + +W
Sbjct: 183 GNASDGNGTGEGSGNQASEIRRLPAERQPSRIIRASESDLAEHAARLEAIAKSAGAPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|417791676|ref|ZP_12439110.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii E899]
gi|449309401|ref|YP_007441757.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii SP291]
gi|333954229|gb|EGL72097.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii E899]
gi|449099434|gb|AGE87468.1| DNA polymerase III subunit epsilon [Cronobacter sakazakii SP291]
Length = 243
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFMVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL NK F ++VD+FL+Y+ +E++IHNA+FD+GF+D E +L T +
Sbjct: 67 GISDEFLMNKPVFGDVVDDFLDYIRGAELVIHNASFDIGFMDYEFGMLNRGIPKTDTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 127 ITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQTSIA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGDGQQQQGDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQK-KGGSCLWR 242
>gi|381160575|ref|ZP_09869807.1| DNA polymerase III, epsilon subunit [Thiorhodovibrio sp. 970]
gi|380878639|gb|EIC20731.1| DNA polymerase III, epsilon subunit [Thiorhodovibrio sp. 970]
Length = 240
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/234 (44%), Positives = 152/234 (64%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRIIEIGCVE+ +R++T ++ H Y+ P R E+ A+ +HG++
Sbjct: 2 RQIVLDTETTGLEPSQGHRIIEIGCVELVDRRLTRSSFHQYLQPDRQVEEGAVQVHGISD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL +K +F ++ + FL+Y+ +++IIHNA FD+GFL+ EL L G ++ + D
Sbjct: 62 EFLADKPRFGDVAEQFLDYIGGAQLIIHNADFDLGFLNHELRLWRKGAASLESQC-EVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN--LNF 178
TL +AR H G+RNSLDALC RY+I R LHG LLDAE+LAEVYLAMT GQ++ L+
Sbjct: 121 TLKLARSRHPGQRNSLDALCKRYHIDNTRRDLHGALLDAEILAEVYLAMTGGQASLELDV 180
Query: 179 KP--KINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
+P + + ++ + + P+ + A E+ H L+ IDK S GRC+W
Sbjct: 181 QPARQRDGQGAQAARVLLKDRPPLAVIRATEVEIDAHRQRLAAIDKASEGRCVW 234
>gi|422606326|ref|ZP_16678336.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. mori
str. 301020]
gi|330889978|gb|EGH22639.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. mori
str. 301020]
Length = 259
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 154/239 (64%), Gaps = 13/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY--RITD 120
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G + I D
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITLHCSILD 128
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 129 TLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLAG 188
Query: 181 KINNSNNIETKI--------KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N ++P + P ++ A+ +EL +H + +S I K S +W
Sbjct: 189 NASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKASGAPALW 247
>gi|332162776|ref|YP_004299353.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|386311593|ref|YP_006007649.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
palearctica Y11]
gi|433547868|ref|ZP_20503918.1| DNA polymerase III epsilon subunit [Yersinia enterocolitica IP
10393]
gi|318606882|emb|CBY28380.1| DNA polymerase III epsilon subunit [Yersinia enterocolitica subsp.
palearctica Y11]
gi|325667006|gb|ADZ43650.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
palearctica 105.5R(r)]
gi|330861137|emb|CBX71400.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica W22703]
gi|431790428|emb|CCO66958.1| DNA polymerase III epsilon subunit [Yersinia enterocolitica IP
10393]
Length = 260
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 155/237 (65%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAYGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I F+ ++ +E++IHNAAFD+GF+D E +L T+
Sbjct: 67 GISDEFLADKPTFADIAPEFIEFIRGAELVIHNAAFDIGFMDYEFRMLQQDIPKTETFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LL+AR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L+
Sbjct: 127 ITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLS 186
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + N+S++I+ + + + I A +EL H L + K G C+W+
Sbjct: 187 FSMEGDQSQNNSSDDIQRITRPASGLKIIYAAEDELAAHESRLDLVMK-KGGSCLWR 242
>gi|374849923|dbj|BAL52925.1| DNA polymerase III subunit epsilon [uncultured beta
proteobacterium]
Length = 243
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 149/234 (63%), Gaps = 5/234 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + LD ETTGL+ G R+IEIG VEI RQ+TG H YINP R+ + A+A+HG+
Sbjct: 1 MQRIVTLDTETTGLDWKRGDRVIEIGAVEIVGRQLTGRRFHKYINPEREIDAGAIAVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI-YRIT 119
T +FL +K KF+++ L+++ ++ ++IHNA+FD+GFL+ EL +G + + I
Sbjct: 61 TAEFLADKPKFADVAPALLDFLRDAVVVIHNASFDLGFLNAELRRVGLEMTVETVAAEIV 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL +A+ KR SLDALC+RY I HRTLHG LLDAELLAEVYLAMTRGQ +L
Sbjct: 121 DTLKLAKTNDPTKRASLDALCERYGIDNQHRTLHGALLDAELLAEVYLAMTRGQESLLID 180
Query: 180 P--KINNSNNIETKIKIPNNIPIK--LANSNELVQHNMILSKIDKHSNGRCIWK 229
+++ T+ + P + + +EL H IL +IDK SNG+ +W+
Sbjct: 181 AIGDAQGASHAATQWQRPATLVLAKVTVTPDELAAHEAILDEIDKASNGQTVWR 234
>gi|418242758|ref|ZP_12869262.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
gi|351777835|gb|EHB20026.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
palearctica PhRBD_Ye1]
Length = 265
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 155/237 (65%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAYGVH 71
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I F+ ++ +E++IHNAAFD+GF+D E +L T+
Sbjct: 72 GISDEFLADKPTFADIAPEFIEFIRGAELVIHNAAFDIGFMDYEFRMLQQDIPKTETFCT 131
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LL+AR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L+
Sbjct: 132 ITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLS 191
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + N+S++I+ + + + I A +EL H L + K G C+W+
Sbjct: 192 FSMEGDQSQNNSSDDIQRITRPASGLKIIYAAEDELAAHESRLDLVMK-KGGSCLWR 247
>gi|425899243|ref|ZP_18875834.1| DNA polymerase III, epsilon subunit [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
gi|397889737|gb|EJL06219.1| DNA polymerase III, epsilon subunit [Pseudomonas chlororaphis
subsp. aureofaciens 30-84]
Length = 252
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 154/241 (63%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG---YSNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFIQGAQLIIHNAAFDVGFINNEFALMGRHDRADITQHCT-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTLLMAR+ H G+RNSLDALC RY++ R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLLMARERHPGQRNSLDALCKRYDVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSNNIETKIKIPNNI----------PIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ N E + I + A+ EL +H + L I K + +W
Sbjct: 183 GNASDGNGSEGSGNRASEIRRLSADRQRGRVIRASEAELAEHQVRLEIIAKSAGAPALWT 242
Query: 230 K 230
+
Sbjct: 243 Q 243
>gi|300715435|ref|YP_003740238.1| DNA polymerase III subunit epsilon [Erwinia billingiae Eb661]
gi|299061271|emb|CAX58380.1| DNA polymerase III epsilon subunit [Erwinia billingiae Eb661]
Length = 244
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 153/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 8 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNYHVYLKPDRLVDPEAFGVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F++I D FL Y+ +E++IHNA+FD+GF+D E + LG + T+ R
Sbjct: 68 GIADEFLADKPTFADIADGFLEYIDGAELVIHNASFDIGFMDYEFAKLGRNIPKTETFCR 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MARK+ GKRNSLDALC RY I RTLHG LLD+E+LAEV+LAMT GQ+ L
Sbjct: 128 ITDSLAMARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDSEILAEVFLAMTGGQTLLK 187
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + +N + I + + + + A+ E + H L + K G C+W+
Sbjct: 188 FSMEGDQQQQSNGDTIHRITRPASGLVVLSASEAENMAHEERLDLVMK-KGGSCLWR 243
>gi|254429095|ref|ZP_05042802.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
gi|196195264|gb|EDX90223.1| DNA polymerase III, epsilon subunit [Alcanivorax sp. DG881]
Length = 246
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 154/235 (65%), Gaps = 8/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL DGHR+IEIGCVE++NR++TGNNLH Y+NP R+ + ALA+HG++T
Sbjct: 2 RQVVLDTETTGLEPNDGHRVIEIGCVEMENRRLTGNNLHLYLNPEREIDAGALAVHGIST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFT-KYIYRITDT 121
+FL +K F ++VD FL +V +E++IHNA FDVGFL+ EL LG T + + DT
Sbjct: 62 EFLADKPTFDKVVDEFLAFVDGAELVIHNAPFDVGFLNHELRRLGARYGTIEQRCGVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL----N 177
L+MAR+ H G++N+LDALC RY + HR LHG LLDAE+LA+VYLAMT GQ+ L N
Sbjct: 122 LVMARQKHPGQKNNLDALCRRYFVENGHRELHGALLDAEILADVYLAMTGGQTRLSLGGN 181
Query: 178 FKPKINNSNNIETKIKIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ E ++ + P + + +E+ +HN L+ I + +W+
Sbjct: 182 DGSEQGGDATAEAIRRLSADRPALAVVRPSESEMQRHNDKLTAIAGKNGEPTVWQ 236
>gi|392977714|ref|YP_006476302.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
dissolvens SDM]
gi|392323647|gb|AFM58600.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
dissolvens SDM]
Length = 243
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D FL+Y+ +E+IIHNA+FD+GF+D E + L T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFLDYIKGAELIIHNASFDIGFMDYEFNKLQRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQTSMK 186
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + LA+ EL+ H L + K G C+W+
Sbjct: 187 FSMENESQQTQGEAGIQRVVRQASRLRVVLASDAELLDHESRLDLVQK-KGGSCMWR 242
>gi|238913716|ref|ZP_04657553.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Tennessee str. CDC07-0191]
Length = 246
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F++++D FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVIDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 190 FAMEGETQRQQGEATIQRIVRQASRLRVVFASEEELAAHESRLDLVQK-KGGSCLWR 245
>gi|170768002|ref|ZP_02902455.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627]
gi|170123490|gb|EDS92421.1| DNA polymerase III, epsilon subunit [Escherichia albertii TW07627]
Length = 243
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFADVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + I A EL H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEVTIQRIVRQASKLRIVFATDEELEAHEARLDLVQK-KGGSCLWR 242
>gi|119944269|ref|YP_941949.1| DNA polymerase III subunit epsilon [Psychromonas ingrahamii 37]
gi|119862873|gb|ABM02350.1| DNA polymerase III, epsilon subunit [Psychromonas ingrahamii 37]
Length = 239
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 110/236 (46%), Positives = 150/236 (63%), Gaps = 8/236 (3%)
Query: 1 MHRHIVLDIETTGLN----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
M R +VLD ETTG+N I GHRIIEIGCVE+ NR++TG + H Y+ P R+ + A+A
Sbjct: 6 MIRQVVLDTETTGMNKGGTIYVGHRIIEIGCVEVINRRLTGRHFHVYVKPDREIDPEAIA 65
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYI 115
+HG+T +FL +K FS+I D F+ ++ +E++IHNA FDVGF+D E L + T I
Sbjct: 66 VHGITDEFLHDKPAFSDIADEFIEFIKGAELVIHNAPFDVGFMDQEFRFLNKRTKPTAEI 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
ITDTL+MARK++ GKR SLDALC I HR LHG LLDAE+LA+VYL MT GQ
Sbjct: 126 STITDTLVMARKMYPGKRASLDALCRELGIDNKHRVLHGALLDAEILADVYLLMTGGQKK 185
Query: 176 LNFKPKINNSNNIETKI-KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
LN N N ++ K + + I A+ +E H L I+K ++ C+W++
Sbjct: 186 LNLSSSGQNDTNTGKRVRKTQSPLTIISASEDEQQAHEKRLDLIEKSAS--CLWRE 239
>gi|372273369|ref|ZP_09509417.1| DNA polymerase III subunit epsilon [Marinobacterium stanieri S30]
Length = 242
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/232 (45%), Positives = 151/232 (65%), Gaps = 5/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG++ GH IIEIGCVE+ R++TGNN H YI P R+ E A+ +HG+T
Sbjct: 4 RQIILDTETTGIDPEAGHNIIEIGCVEMVKRKLTGNNYHRYIKPDREVEAEAIEVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
++L +K KF+ + D FL Y+ +E+IIHNAAFDVGF++ EL+ G + + I ++TDTL
Sbjct: 64 EYLADKPKFAVLADEFLEYIRGAELIIHNAAFDVGFMNAELARNGIAERIEDICQVTDTL 123
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ARK + G+RNSLDALC RY I HR LHG LLD+E+LA+VYL++T GQ++L
Sbjct: 124 ALARKKYPGQRNSLDALCRRYGIDNSHRELHGALLDSEILADVYLSLTGGQTSLQLGQNG 183
Query: 183 NNSNNIETKIKIPNNIPIKL----ANSNELVQHNMILSKIDKHSNGRCIWKK 230
S I+ + + L + +EL H L +DK S+G +W++
Sbjct: 184 GGSEEEGEVIRRIDTAQLSLKVMRPSEDELAAHEAFLDLLDKKSDG-AVWRR 234
>gi|297538708|ref|YP_003674477.1| DNA polymerase III subunit epsilon [Methylotenera versatilis 301]
gi|297258055|gb|ADI29900.1| DNA polymerase III, epsilon subunit [Methylotenera versatilis 301]
Length = 235
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/231 (45%), Positives = 155/231 (67%), Gaps = 8/231 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL GHR+IE+ VE+ NR++T + HYY+NP R+ ++ A +HG++
Sbjct: 2 RQIFLDTETTGLYHAQGHRVIEVAAVEVINRRLTKQHFHYYLNPDREIDQGAQEVHGISL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F++I + + ++++SE+I+HNA FDVGFL+ E L+ +ITDTL
Sbjct: 62 EFLQDKPHFADIANELIAFIADSELIMHNAPFDVGFLNREFGLIEQKPVEAITAKITDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---K 179
+A+++ G+RNSLDALC Y I RTLHG LLDAELLA+VY+AMTRGQ +L K
Sbjct: 122 KIAKEMRPGQRNSLDALCKHYGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMMELDK 181
Query: 180 PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
P+ NS+ I+ +IK P + +KLAN E+ H+ ++ + K S+ C+W K
Sbjct: 182 PQQKNSDAIQ-EIKQP--VLVKLANQAEISAHDEYIASLAKSSD--CLWAK 227
>gi|334123334|ref|ZP_08497360.1| DNA-directed DNA polymerase III epsilon subunit [Enterobacter
hormaechei ATCC 49162]
gi|333390818|gb|EGK61947.1| DNA-directed DNA polymerase III epsilon subunit [Enterobacter
hormaechei ATCC 49162]
Length = 246
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D FL+Y+ +E++IHNA+FD+GF+D E S L T +
Sbjct: 70 GIADEFLLDKPTFADVADEFLDYIRGAELVIHNASFDIGFMDYEFSKLNRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQTSMK 189
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ ++ N + + LA+ EL+ H L + K G C+W+
Sbjct: 190 FSMENESQQTRDEGGIQRIVRQANRLRVVLASDEELMNHESRLDLVQK-KGGSCLWR 245
>gi|260596631|ref|YP_003209202.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
gi|429100220|ref|ZP_19162194.1| DNA polymerase III epsilon subunit [Cronobacter turicensis 564]
gi|260215808|emb|CBA28259.1| DNA polymerase III subunit epsilon [Cronobacter turicensis z3032]
gi|426286869|emb|CCJ88307.1| DNA polymerase III epsilon subunit [Cronobacter turicensis 564]
Length = 243
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 153/238 (64%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFMVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G++ +FL NK F ++V++FL+Y+ +E++IHNA+FD+GF+D E +L G T+
Sbjct: 67 GISDEFLMNKPVFGDVVEDFLDYIRGAELVIHNASFDIGFMDYEFGMLKRGLPK-TETFC 125
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 126 KITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQTSI 185
Query: 177 NFK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 186 AFAMEGDGQQQRDDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQK-KGGSCLWR 242
>gi|395796827|ref|ZP_10476121.1| DNA polymerase III subunit epsilon [Pseudomonas sp. Ag1]
gi|421137694|ref|ZP_15597771.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens BBc6R8]
gi|395339107|gb|EJF70954.1| DNA polymerase III subunit epsilon [Pseudomonas sp. Ag1]
gi|404511047|gb|EKA24940.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens BBc6R8]
Length = 248
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 156/242 (64%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F +++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQTDRADITRHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-NIETKIKIPNNI--------PIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N + E P+ I P + A+ ++ +H L I K + +W
Sbjct: 183 GNASDGNGSAEGSGNRPSEIRRLPADRQPTTIIRASEQDMAEHAARLEAIAKSAGAPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|440229603|ref|YP_007343396.1| DNA polymerase III, epsilon subunit [Serratia marcescens FGI94]
gi|440051308|gb|AGB81211.1| DNA polymerase III, epsilon subunit [Serratia marcescens FGI94]
Length = 245
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 152/237 (64%), Gaps = 10/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG + H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPDRLVDPEAYGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F +I D FL+++ E++IHNA+FD+GF+D E +L + T
Sbjct: 67 GISDEFLADKPTFDQIADEFLDFIRGGELVIHNASFDIGFMDHEFRMLQRNIPNTDTFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L+MAR++ GKRN+LDALC RY I RTLHG LLDAE+LAEVYLAMT GQ+++
Sbjct: 127 ITDSLMMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F+ + ++ ++ ++ N + + A+ ELV H L + K G C+W+
Sbjct: 187 FQMEGDTQQSDSVQEVQRVVRPANAMKVVYASDEELVAHEARLDLVAKKGGGNCLWR 243
>gi|161504623|ref|YP_001571735.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:- str. RSK2980]
gi|160865970|gb|ABX22593.1| hypothetical protein SARI_02738 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 246
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FAIEGETQRQQGEATIQRIVRQASRLRVVFATDEELAAHESRLDLVQK-KGGSCLWR 245
>gi|419960269|ref|ZP_14476312.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
cloacae GS1]
gi|388604858|gb|EIM34085.1| DNA polymerase III subunit epsilon [Enterobacter cloacae subsp.
cloacae GS1]
Length = 243
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D FL+Y+ +E++IHNA+FD+GF+D E S L T +
Sbjct: 67 GIADEFLLDKPTFADVADEFLDYIRGAELVIHNASFDIGFMDYEFSKLNRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQTSMK 186
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ ++ N + + LA+ EL+ H L + K G C+W+
Sbjct: 187 FSMENESQQTRDEGGIQRIVRQANRLRVVLASDEELMNHESRLDLVQK-KGGSCLWR 242
>gi|408373756|ref|ZP_11171450.1| DNA polymerase III subunit epsilon [Alcanivorax hongdengensis
A-11-3]
gi|407766460|gb|EKF74903.1| DNA polymerase III subunit epsilon [Alcanivorax hongdengensis
A-11-3]
Length = 245
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 152/235 (64%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL +GHR+IEIGCVE+ NR++TGNNLH Y+NP RD ++ AL +HG++
Sbjct: 2 RQVVLDTETTGLEPAEGHRVIEIGCVEVVNRRLTGNNLHLYLNPERDIDEGALEVHGISR 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR--ITD 120
+FL +K FS++ + F+ ++ +E++IHNA FDVGFL+ EL LG S F R I D
Sbjct: 62 EFLADKPLFSQVAEEFIRFIDGAELVIHNAPFDVGFLNHELRRLG-SQFGTIEQRCGILD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR+ H G++N+LDALC RY++ HR LHG LLDAE+LA+VYLAMT GQ+ L+
Sbjct: 121 TLKMARQKHPGQKNNLDALCRRYDVENGHRELHGALLDAEILADVYLAMTGGQTRLSLSA 180
Query: 181 KINNSNN----IETKIKIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ E ++ + P + A +E +H L I K ++G +W
Sbjct: 181 NEDAGEGGGAVAEAIRRLSADRPALKVVSATDDERQRHQSKLQAIAKGNDGVALW 235
>gi|350562050|ref|ZP_08930887.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio
thiocyanoxidans ARh 4]
gi|349780368|gb|EGZ34703.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio
thiocyanoxidans ARh 4]
Length = 236
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 147/231 (63%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ GHRIIEIGC+E+ NR++TG LH Y+ P R+ + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLDPAAGHRIIEIGCLEVVNRRVTGERLHEYLQPDREIDAGAVEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDT 121
+FL++K +F ++V+ FL +V +E++IHNA FD+GF++ EL +G + I ++ DT
Sbjct: 62 EFLRDKPRFGDVVERFLEFVDGAELVIHNAPFDLGFINHELQRVGARVRRIEEICQVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK-- 179
L++AR++H G RNSLDALC RY + R LHG +LDAELLAEVYLAMT GQ L
Sbjct: 122 LVLARQMHPGTRNSLDALCRRYQVDASGRVLHGAVLDAELLAEVYLAMTGGQVALGLDQT 181
Query: 180 -PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
P ++ + + +P+ EL H +++ +++ S W+
Sbjct: 182 GPDTTAASTPQRARRSQARLPVIEPGPEELAAHAELVALLEQSSGVPSPWR 232
>gi|399521043|ref|ZP_10761815.1| DNA polymerase III, epsilon subunit [Pseudomonas pseudoalcaligenes
CECT 5344]
gi|399111532|emb|CCH38374.1| DNA polymerase III, epsilon subunit [Pseudomonas pseudoalcaligenes
CECT 5344]
Length = 252
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 157/239 (65%), Gaps = 12/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R++VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+NP R+ ++ A+A+HG+T
Sbjct: 9 RYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPDREIDEGAIAVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS---NFTKYIYRIT 119
+++ +K +F ++ D F ++ +++IIHNAAFDVGF++ E +LLG S + + Y +
Sbjct: 69 EYVADKPRFKDVADEFYEFIKGAQLIIHNAAFDVGFINNEFALLGQSERADVSDYC-SVL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + +R LHG LLD+E+LA+VYLAMT GQ+NL+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAMTGGQTNLSLA 187
Query: 180 PKINNSNNIETKIKIP--------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + + P + A+ EL H L+ I+K + G +W +
Sbjct: 188 GEGSDGDGSGRQQPTPIRRLDASRPRTRVIRASEEELAAHLARLAVIEKSAGGPSLWAQ 246
>gi|293392715|ref|ZP_06637034.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera
DSM 4582]
gi|291424832|gb|EFE98042.1| DNA-directed DNA polymerase III epsilon subunit [Serratia odorifera
DSM 4582]
Length = 245
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 152/237 (64%), Gaps = 10/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG + H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPDRLVDPEAYGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F +I D F+ ++ E++IHNAAFD+GF+D E +L T+
Sbjct: 67 GISDEFLADKPTFDQIADEFIEFIRGGELVIHNAAFDIGFMDHEFRMLQQDIPKTETFCA 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMAR++ GKRN+LDALC RY I RTLHG LLDAE+LAEVYLAMT GQ+ +
Sbjct: 127 ITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQTTMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F+ + +++ +I+ + ++ + A+ +E+V H L + K G C+W+
Sbjct: 187 FQMEGDTQQSDSTQDIQRIARPATSMKVIYASDDEVVAHESRLDLVAKKGGGNCLWR 243
>gi|238794443|ref|ZP_04638053.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909]
gi|238726238|gb|EEQ17782.1| DNA polymerase III subunit epsilon [Yersinia intermedia ATCC 29909]
Length = 259
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 156/237 (65%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPDRLVDPEAYGVH 71
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I FL+++ +E++IHNAAFD+GF+D E +L T+
Sbjct: 72 GISDEFLADKPTFADITPEFLDFIRGAELVIHNAAFDIGFMDYEFRMLQQDIPKTETFCT 131
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LL+AR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L+
Sbjct: 132 ITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLS 191
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + ++S +I+ + + + I A +EL+ H L + K G C+W+
Sbjct: 192 FSMEGDQSQNDSSEDIQRITRPASELKIIYAAEDELLAHESRLDLVMK-KGGSCLWR 247
>gi|333984074|ref|YP_004513284.1| DNA polymerase III subunit epsilon [Methylomonas methanica MC09]
gi|333808115|gb|AEG00785.1| DNA polymerase III, epsilon subunit [Methylomonas methanica MC09]
Length = 239
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 112/234 (47%), Positives = 160/234 (68%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+N +GH+IIEIGCVE+ NR++T N H Y+NP R+ + A+ +HG+T
Sbjct: 8 RQVVLDTETTGINPKEGHKIIEIGCVELINRRLTQNRFHVYLNPDREIDAGAIEVHGITN 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR---IT 119
+FLK+K +F++IV++F+ + S +E+IIHNA FDVGFL+ EL+ L N T+ + +
Sbjct: 68 EFLKDKSRFADIVEDFMRFTSGAELIIHNAPFDVGFLNHELAQL--PNETRSVESNSTVF 125
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL ARK H G RNSLDALC RY I HR LHG LLDAE+LA+VYL MT GQ++L +
Sbjct: 126 DTLAYARKKHPGARNSLDALCKRYGIDNSHRDLHGALLDAEILADVYLIMTGGQASLLDE 185
Query: 180 PKINNSNNIETKIKIPNNIP-IKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++N+ + +++ + P +K+ + EL+ H L KI K S G C+W K
Sbjct: 186 SEEVHNNDQQRVVRLSADRPRLKVIDCTAEELIDHQQRLDKIAKVS-GNCLWLK 238
>gi|395497631|ref|ZP_10429210.1| DNA polymerase III subunit epsilon [Pseudomonas sp. PAMC 25886]
Length = 248
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 102/242 (42%), Positives = 156/242 (64%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F +++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVADEFFEFINGAQLIIHNAAFDVGFINNEFALMGQTDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-NIETKIKIPNNI--------PIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N + E P+ I P + A+ ++ +H L I K + +W
Sbjct: 183 GNASDGNGSAEGSGNRPSEIRRLPADRQPTTIIRASEQDMAEHAARLEAIAKSAGAPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|329894914|ref|ZP_08270713.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
gi|328922643|gb|EGG29978.1| DNA polymerase III epsilon subunit [gamma proteobacterium IMCC3088]
Length = 247
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 154/241 (63%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL DGHR+IEIGCVE+ NR+++G + H YINP R+ + A+ +HG++
Sbjct: 2 RQIVLDTETTGLETSDGHRVIEIGCVELINRRLSGRHFHQYINPQREVDPGAMEVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSL-----LGYSNFTKYIYR 117
+FL++K FS I D FL ++ +E+IIHNA FD+GFLD ELSL + +
Sbjct: 62 EFLQDKPLFSAIADEFLEFIKGAELIIHNAPFDIGFLDYELSLESERRAAPMPTVESLCG 121
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+ DTL+MAR+ H G+RN+LDALC RY++ R LHG LLD+E+LA+VYLAMT GQ+ L
Sbjct: 122 VIDTLVMARRKHPGQRNTLDALCTRYDVDNSSRDLHGALLDSEILADVYLAMTGGQTALT 181
Query: 178 FKPK----INNSNNIETKI----KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + SN + +I + ++P+ AN+ E H L +D S+G +W+
Sbjct: 182 LQSENREGGEQSNWVTGEIVRVQRAGLSLPVVPANAEESQAHEAYLDLLDNKSDG-ALWR 240
Query: 230 K 230
+
Sbjct: 241 R 241
>gi|320538891|ref|ZP_08038567.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
Tucson]
gi|320031051|gb|EFW13054.1| DNA polymerase III epsilon subunit [Serratia symbiotica str.
Tucson]
Length = 247
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG + H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPDRLVDPEAYGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F +I D FL+++ E++IHNAAFD+GF+D E LL T+
Sbjct: 67 GISDEFLADKPTFDQIADEFLDFIRGGELVIHNAAFDIGFMDHEFRLLQQGIPKTETFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMAR++ GKRN+LDALC RY I RTLHG LLDAE+LAEVYLAMT GQ+++
Sbjct: 127 ITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQTSMT 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F+ + N++ +I+ ++ + + A+ EL H L + G C+W+
Sbjct: 187 FQMEGDTQQTNSAQDIQRIVRPAMAMKVVYASDKELAAHEARLDLV-AQKGGSCLWR 242
>gi|261346344|ref|ZP_05973988.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM
4541]
gi|282565658|gb|EFB71193.1| DNA polymerase III, epsilon subunit [Providencia rustigianii DSM
4541]
Length = 253
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 150/238 (63%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F+EI D F+ ++ +E+IIHNA FD+GF+D E L T
Sbjct: 67 GISDEFLQDKPVFAEIADEFIEFIRGAELIIHNAPFDIGFMDYEFRKLNRGIPPTAEFCS 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L++ARKI GKRN+LDALCDRY I RTLHG LLDAE+L++VYLAMT GQ++L
Sbjct: 127 ITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQTSLA 186
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F I +N I+ + + + + A+ E+ +H L +DK C+W+K
Sbjct: 187 FSMDSDSKNIQQANEIQRIQRPASGLKVLYASDQEIAEHEARLDIVDKKGGKPCLWRK 244
>gi|387893640|ref|YP_006323937.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens A506]
gi|423691278|ref|ZP_17665798.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens SS101]
gi|387160765|gb|AFJ55964.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens A506]
gi|387999293|gb|EIK60622.1| DNA polymerase III, epsilon subunit [Pseudomonas fluorescens SS101]
Length = 248
Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 154/241 (63%), Gaps = 13/241 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P RDS++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPDRDSDEGAIGVHGITD 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FLK K +F+E+ D F +++ +++IIHNAAFD+GF++ E +L+G ++ T D
Sbjct: 64 EFLKGKPRFAEVADEFFEFINGAQLIIHNAAFDIGFINNEFALMGQTDRADISQHCTILD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 124 TLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLAG 183
Query: 181 KINN-SNNIETKIKIPNNI----------PIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ S + E P+ I PI A+ +L +H L I K + +W
Sbjct: 184 NASDGSGSAEGSGNRPSEIRRLPADRKPTPIIRASEQDLAEHAARLEAIAKAAGAPALWT 243
Query: 230 K 230
+
Sbjct: 244 Q 244
>gi|157147189|ref|YP_001454508.1| DNA polymerase III subunit epsilon [Citrobacter koseri ATCC
BAA-895]
gi|157084394|gb|ABV14072.1| hypothetical protein CKO_02968 [Citrobacter koseri ATCC BAA-895]
Length = 246
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 154/238 (64%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G+ +FL +K F+++VD+FL Y+ +E++IHNA+FD+GF+D E + L G +++
Sbjct: 70 GIADEFLLDKPVFADVVDDFLEYIRGAELVIHNASFDIGFMDYEFAKLSRGIPKTSEFC- 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITD+L +AR++ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 129 KITDSLALARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQTSM 188
Query: 177 NFK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + LA EL+ H L + K G C+W+
Sbjct: 189 AFSMEGETQQQQGEATIQRIVRQASKLRVVLATDEELMAHESRLDLVQK-KGGSCLWR 245
>gi|354721525|ref|ZP_09035740.1| DNA polymerase III subunit epsilon [Enterobacter mori LMG 25706]
Length = 243
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D FL Y+ +E++IHNA+FD+GF+D E S L T +
Sbjct: 67 GIADEFLLDKPTFADVADEFLEYIKGAELVIHNASFDIGFMDYEFSKLNRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDDTKRTLHGALLDAQILADVYLTMTGGQTSMK 186
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + ++ I+ ++ + + + LA+ EL+ H L + K G C+W+
Sbjct: 187 FSMENESQQTRDAGGIQRVVRQASRLRVVLASDEELLNHESRLDLVQK-KGGSCMWR 242
>gi|90021666|ref|YP_527493.1| DNA polymerase III subunit epsilon [Saccharophagus degradans 2-40]
gi|89951266|gb|ABD81281.1| DNA polymerase III, epsilon subunit [Saccharophagus degradans 2-40]
Length = 238
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 151/235 (64%), Gaps = 7/235 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRIIEIGCVE+ NR++TG + H YI P R+ ++ A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEPSQGHRIIEIGCVELINRKLTGRHYHQYIKPEREIDEGAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY-SNFTKYIYRITDT 121
+FL +K F +I D F+ +V +E++IHNA FDVGFL+ E +LLG S I DT
Sbjct: 62 EFLADKPVFKDIADEFMAFVDGAELVIHNAPFDVGFLNHEFNLLGRGSTVINDRCSILDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L +AR H G++N+LDALC RY R LHG LLDAE+LA+VYL MT GQ+NL
Sbjct: 122 LALARNKHPGQKNNLDALCKRYGADNSARDLHGALLDAEILADVYLLMTGGQTNLALGGA 181
Query: 182 INNS---NNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++S + E +++ + +PI A++ EL H L++IDK S G C+W K
Sbjct: 182 GSSSGMDDGGEELVRVSADRKPLPIIRASAEELALHEKKLAEIDKASGGECLWLK 236
>gi|268592015|ref|ZP_06126236.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
gi|291312407|gb|EFE52860.1| DNA polymerase III, epsilon subunit [Providencia rettgeri DSM 1131]
Length = 247
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 154/238 (64%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F+EI D FL ++ +E++IHNA FD+GF+D E L T+
Sbjct: 67 GISDEFLQDKPVFAEIADEFLEFIRGAELVIHNAPFDIGFMDYEFRKLNKGIPPTQDFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L++ARK+ GKRN+LDALCDRY I RTLHG LLDAE+L++VYLAMT GQ++L+
Sbjct: 127 ITDSLVLARKLFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQTSLS 186
Query: 178 FKPKINNSNNIE----TKIKIPNN-IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F ++NN + +I+ P + + A+ EL+ H L +DK C+W++
Sbjct: 187 FSMDSESANNEQEYEIQRIERPQTGLRVIFASDEELIAHEARLDIVDKKGGKPCLWRQ 244
>gi|311280820|ref|YP_003943051.1| DNA polymerase III subunit epsilon [Enterobacter cloacae SCF1]
gi|308750015|gb|ADO49767.1| DNA polymerase III, epsilon subunit [Enterobacter cloacae SCF1]
Length = 246
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 152/238 (63%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFNVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G+ +FL +K F+++ D FL Y+ +E++IHNA+FD+GF+D E S L G + T
Sbjct: 70 GIADEFLLDKPTFADVCDEFLEYIRGAELVIHNASFDIGFMDYEFSKLNRGIAK-TNTFC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 129 KVTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLAMTGGQTSM 188
Query: 177 NF-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + LA+ EL+ H L + K G C+W+
Sbjct: 189 AFAMEGEAQQTQGEAGIQRVVRAASKLRVVLASDEELMAHESRLDLVQK-KGGSCLWR 245
>gi|429105739|ref|ZP_19167608.1| DNA polymerase III epsilon subunit [Cronobacter malonaticus 681]
gi|426292462|emb|CCJ93721.1| DNA polymerase III epsilon subunit [Cronobacter malonaticus 681]
Length = 243
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFMVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL NK F ++VD+FL+Y+ +E++IHNA+FD+GF+D E +L T+ +
Sbjct: 67 GISDEFLLNKPVFGDVVDDFLDYIRGAELVIHNASFDIGFMDYEFGMLNRGIPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLD+++LA+VYLAMT GQ+++
Sbjct: 127 ITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDSQILADVYLAMTGGQTSIA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FAMEGDGQQQQGDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQK-KGGSCLWR 242
>gi|333900449|ref|YP_004474322.1| DNA polymerase III subunit epsilon [Pseudomonas fulva 12-X]
gi|333115714|gb|AEF22228.1| DNA polymerase III, epsilon subunit [Pseudomonas fulva 12-X]
Length = 250
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 158/239 (66%), Gaps = 12/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHR+IEIGCVE++ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RRVVLDTETTGMPVNDGHRVIEIGCVEVEGRRLTGRHFHIYLQPDREIDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+ LK+K +F +I D F ++ +++IIHNA FD+GFL+ E +L+G S+ + Y +
Sbjct: 62 EDLKDKPRFKDIADEFYEFIKGAQLIIHNAPFDIGFLNNEFALIGQHERSDISSYC-DVL 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ+NL+
Sbjct: 121 DTLQMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTNLSLA 180
Query: 180 PKINNSNNI----ETKI-KIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + T I ++P + P + A+++EL H L+ I+K + +W +
Sbjct: 181 GEGADGDGSGRQQATPIRRLPADRPRGVVITASADELAAHAARLAVIEKAAGAPALWAQ 239
>gi|238784821|ref|ZP_04628822.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
gi|238714237|gb|EEQ06248.1| DNA polymerase III subunit epsilon [Yersinia bercovieri ATCC 43970]
Length = 259
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 154/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPDRLVDPEAYGVH 71
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I FL ++ +E+IIHNAAFD+GF+D E +L T+
Sbjct: 72 GISDEFLADKPTFADIAPEFLEFIRGAELIIHNAAFDIGFMDHEFRMLQQDIPKTETFCT 131
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMAR++ GKRN+LDALCDRY I RTLHG LLDAE+L+EVYLAMT GQ++L
Sbjct: 132 ITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAMTGGQTSLT 191
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + ++S++I+ + + + I A +EL H L + K G C+W+
Sbjct: 192 FSMEGDQSQNDSSDDIQRITRPASGLKIIYAAEDELAAHESRLDLVMK-KGGSCLWR 247
>gi|288940138|ref|YP_003442378.1| DNA polymerase III subunit epsilon [Allochromatium vinosum DSM 180]
gi|288895510|gb|ADC61346.1| DNA polymerase III, epsilon subunit [Allochromatium vinosum DSM
180]
Length = 240
Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 113/235 (48%), Positives = 148/235 (62%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL +GHRIIEIGCVE+ +R+ TG N H Y+NP R + A A+HG++
Sbjct: 2 RQIVLDTETTGLEPREGHRIIEIGCVELVDRRPTGRNFHEYLNPERQIDAEAEAVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--IYRITD 120
FL +K +F+E + + Y+ +E+IIHNAAFDVGFLD E L + + + +TD
Sbjct: 62 AFLADKPRFAERAERLVEYLRGAELIIHNAAFDVGFLDHEFGLWRGAEAPRIADLCTVTD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
+LLMARK+H G+RN LDALC RY I HRTLHG LLDAE+LA+VYLAMT GQ +L
Sbjct: 122 SLLMARKLHPGQRNGLDALCKRYAIDNSHRTLHGALLDAEILADVYLAMTGGQVSLYLGG 181
Query: 181 K-INNSNNIETKI---KIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ +N S E + ++ P + A EL H + L I K S G C+W
Sbjct: 182 EGMNGSGVGEGPVHRGRLDPERPRLRVVRATQTELEAHRVRLDAIWKASGG-CVW 235
>gi|383816237|ref|ZP_09971638.1| DNA polymerase III subunit epsilon [Serratia sp. M24T3]
gi|383294898|gb|EIC83231.1| DNA polymerase III subunit epsilon [Serratia sp. M24T3]
Length = 249
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 110/238 (46%), Positives = 151/238 (63%), Gaps = 11/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H Y+ P R + A IH
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHMYLKPDRLVDPEAFGIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F+EI D FL Y+ E++IHNA FD+GF+D E +LG + T+ +
Sbjct: 67 GISDEFLADKPTFAEIADEFLEYIRGGELVIHNANFDIGFMDYEFGMLGRNIPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MARK+ GKRNSLDAL DRY I RTLHG LLD+E+LAEVYL MT GQ+ +
Sbjct: 127 ITDSLFMARKLFPGKRNSLDALSDRYLIDNSKRTLHGALLDSEILAEVYLMMTGGQTLMK 186
Query: 178 FKPKINNSN-----NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F + + +I+ ++ + + + LA+ ELV H L + K G C+W+
Sbjct: 187 FSHEGEQNTGADGLDIQPIMRPASGLRVLLASDEELVAHESRLDLVQK-KGGSCLWRP 243
>gi|271501671|ref|YP_003334697.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech586]
gi|270345226|gb|ACZ77991.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech586]
Length = 244
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 156/238 (65%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG + H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPDRLIDPEAYNVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K ++E+ D+F++++ +E++IHNA+FD+GF+D E LLG T+
Sbjct: 67 GISDEFLADKPTYAEVADDFIDFIRGAELVIHNASFDIGFMDYEFRLLGRDIPKTETFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMAR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLA 186
Query: 178 F------KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + + I+ + + + + A+ +ELV H L I K G C+W+
Sbjct: 187 FSMEGESQQQTVQAETIQRISRPTSALTVLYASDDELVAHEQRLDLIMK-KGGSCLWR 243
>gi|442610940|ref|ZP_21025646.1| DNA polymerase III epsilon subunit [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
gi|441746868|emb|CCQ11708.1| DNA polymerase III epsilon subunit [Pseudoalteromonas luteoviolacea
B = ATCC 29581]
Length = 237
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 109/236 (46%), Positives = 154/236 (65%), Gaps = 6/236 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+ R IVLD ETTG++ +GHRIIEIGCVE+ NR++TGNN H YINP RD E A+ +HG+
Sbjct: 2 LKRQIVLDTETTGIDPKEGHRIIEIGCVELINRRLTGNNFHVYINPERDIEDEAIDVHGI 61
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIYRIT 119
T +FL++K KF I F++Y+ +E++IHNA FDVGF+D E + G + T + +
Sbjct: 62 TNEFLRDKPKFHNIAQEFIDYIQGAELVIHNAPFDVGFMDHEFAKWGKTQAKTTDLCTVL 121
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF- 178
DTL MARK+H G++NSLDALC RY+I RTLHG LLD+E+LA+VYL MT GQ LN
Sbjct: 122 DTLDMARKMHPGQKNSLDALCRRYDIDNSKRTLHGALLDSEILADVYLGMTGGQVKLNLG 181
Query: 179 --KPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
I+ + + + P+K+ A ++E+ H + ++K S G +K+
Sbjct: 182 QNNEAISKAGQGGFRRLNESRTPLKVIRATADEIRVHEERMQLVEKASGGSLWFKQ 237
>gi|398913103|ref|ZP_10656299.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM49]
gi|398181420|gb|EJM68988.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM49]
Length = 252
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 159/240 (66%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ + F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVAEEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQQDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ ++L +H L I K + +W
Sbjct: 183 GNASDGNGSGEGADNSATEIRRLPADRQPTRIIRASEDDLARHAARLEIISKSAGAPALW 242
>gi|119471754|ref|ZP_01614114.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Alteromonadales bacterium TW-7]
gi|359451189|ref|ZP_09240599.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20480]
gi|392538667|ref|ZP_10285804.1| DNA polymerase III subunit epsilon [Pseudoalteromonas marina mano4]
gi|119445377|gb|EAW26665.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Alteromonadales bacterium TW-7]
gi|358042968|dbj|GAA76848.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20480]
Length = 237
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 110/234 (47%), Positives = 153/234 (65%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGNN H YINP R E+ A+ +HG+T
Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRSIEEEAIDVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL++K + +I F +Y+ +E++IHNA FDVG +D E +LL G+ N Y ++ D
Sbjct: 64 EFLRDKPLYRDIAQEFFDYIKGAELVIHNAPFDVGHMDNEFALLNQGFPNTHDYC-QVLD 122
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-K 179
TL MAR +H G++N+LDALC RY+I RTLHG LLD+E+LA+VYLAMT GQ+ LN +
Sbjct: 123 TLKMARDLHPGQKNNLDALCRRYDIDNAKRTLHGALLDSEILADVYLAMTGGQTKLNLNQ 182
Query: 180 PKINNSNNIETKIKIPNNIPIKL----ANSNELVQHNMILSKIDKHSNGRCIWK 229
K + S + I+ N+ L A E H L ++K G+C+W+
Sbjct: 183 NKDDGSEQQQGGIRRLNSERAPLVVLRATDEEQSAHEARLDLVNKEG-GQCLWR 235
>gi|407789541|ref|ZP_11136641.1| DNA polymerase III subunit epsilon [Gallaecimonas xiamenensis
3-C-1]
gi|407206201|gb|EKE76159.1| DNA polymerase III subunit epsilon [Gallaecimonas xiamenensis
3-C-1]
Length = 243
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 149/239 (62%), Gaps = 11/239 (4%)
Query: 1 MHRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
+HR +VLD ETTG+N +GHRIIEIGCVE+ NR++TG + H Y+ P R + A+
Sbjct: 5 IHRQVVLDTETTGMNQDVGPHWEGHRIIEIGCVEVINRRLTGRHFHVYLQPDRPVDPEAI 64
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSN-FTKY 114
+HG+T FL++K +F+E+ +F+ ++ +E++IHNA FD+GF+D E + T+
Sbjct: 65 QVHGITDDFLRDKPRFAEVAQDFIEFIRGAELVIHNAPFDIGFMDHEFRMWNPQQPATQT 124
Query: 115 IYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
+TDTL+MAR++ GKRN+LD LCDR+ I RTLHG LLDAE+LA+VYLAMT GQ+
Sbjct: 125 FCSVTDTLVMARRMFPGKRNNLDVLCDRFFIDNSGRTLHGALLDAEILADVYLAMTGGQT 184
Query: 175 NLNFKPKINNSNNIETKIK----IPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
LN ++S I+ P + + A EL H L + K G C+W+
Sbjct: 185 KLNLVTGGDSSEEGAGGIRRLDLQPGALRVVRATDTELAAHEQRLDLVQK-KGGSCLWR 242
>gi|188534758|ref|YP_001908555.1| DNA polymerase III subunit epsilon [Erwinia tasmaniensis Et1/99]
gi|188029800|emb|CAO97680.1| DNA polymerase III epsilon subunit [Erwinia tasmaniensis Et1/99]
Length = 249
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 153/238 (64%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 8 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G+ +FL +K F++I D+FL Y++ +E++IHNA+FD+GF+D E + L G + T
Sbjct: 68 GIADEFLLDKPTFAQIADDFLAYINGAELVIHNASFDIGFMDYEFAKLQRGIAK-TDTFC 126
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITD+L MAR++ GKRNSLDALC RY I RTLHG LLD+E+LAEV+L MT GQ++L
Sbjct: 127 KITDSLAMARRLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSEILAEVFLTMTGGQTSL 186
Query: 177 NF-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + K + + + + + + A+ EL H L ++K G C+W+
Sbjct: 187 AFSMEGERGKQQDGETVHRIARPSSGLRVVRASEEELFAHEARLDLVEK-KGGSCLWR 243
>gi|238759160|ref|ZP_04620328.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236]
gi|238702576|gb|EEP95125.1| DNA polymerase III subunit epsilon [Yersinia aldovae ATCC 35236]
Length = 259
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 155/237 (65%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPDRLVDPEAYGVH 71
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I FL ++ +E++IHNAAFD+GF+D E +L T+
Sbjct: 72 GISDEFLADKPSFADITPEFLEFIRGAELVIHNAAFDIGFMDYEFRMLQQDIPKTETFCT 131
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LL+AR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L+
Sbjct: 132 ITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLS 191
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + ++S +I+ + + + I A +EL+ H L + K G C+W+
Sbjct: 192 FSMEGDQSQNDSSEDIQRITRPASALKIIYAAEDELLAHESRLDLVMK-KGGSCLWR 247
>gi|326796075|ref|YP_004313895.1| DNA polymerase III subunit epsilon [Marinomonas mediterranea MMB-1]
gi|326546839|gb|ADZ92059.1| DNA polymerase III, epsilon subunit [Marinomonas mediterranea
MMB-1]
Length = 235
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 154/234 (65%), Gaps = 8/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG++ GHRIIEIGCVE+ R++T + H YINP R+ E+ A +HG++
Sbjct: 2 RQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTKRHFHVYINPDREVEEEAFQVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F EI FL+++ +E+IIHNA FDVGF+D E S+LG T+ + I D+L
Sbjct: 62 EFLADKPRFHEIAQEFLDFIRGAELIIHNAPFDVGFMDHEFSMLGNFPKTRDVCEIFDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL----NF 178
+ ARK H G +N+LDALC RY I HR LHG LLD+E+LA+VYL MT GQ++L N
Sbjct: 122 VFARKKHPGAKNNLDALCRRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGLSMND 181
Query: 179 KPKINNSNNI-ETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
+ +S+N+ E + P+ +K+ AN E+ H L IDK S G+ +W+
Sbjct: 182 GSEGGDSDNVGEIRRLSPDRPMLKVLRANETEMAAHEERLDLIDKKS-GQSLWR 234
>gi|119476004|ref|ZP_01616356.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
HTCC2143]
gi|119450631|gb|EAW31865.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
HTCC2143]
Length = 236
Score = 213 bits (542), Expect = 5e-53, Method: Compositional matrix adjust.
Identities = 111/235 (47%), Positives = 151/235 (64%), Gaps = 8/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL GHRIIEIGCVE+ +R++TG + H YINP R+ + A+ +HG+T
Sbjct: 2 RQVVLDTETTGLEPSQGHRIIEIGCVELVDRKLTGRHYHQYINPKREIDTGAMEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIY-RITD 120
+FL +K FS++ FL++V+ +E+IIHNA FD+GF++ E LL S T Y + D
Sbjct: 62 EFLADKPLFSQVAQEFLDFVTGAELIIHNAPFDIGFINSEFKLLDSKSPGTMESYCGVVD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---- 176
TL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ+ L
Sbjct: 122 TLVMARQKHPGQRNSLDALCSRYEVDNSQRDLHGALLDSEILADVYLLMTGGQTKLLLAG 181
Query: 177 --NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
N + ++ NNI + I LAN EL +H + KIDK S+G W+
Sbjct: 182 DDNEEGSGHSDNNIRRLSTNRQPLKIILANDEELAEHEERMQKIDKASDGGNRWR 236
>gi|325277453|ref|ZP_08143061.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
gi|324097411|gb|EGB95649.1| DNA polymerase III subunit epsilon [Pseudomonas sp. TJI-51]
Length = 252
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 157/238 (65%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R+++LD ETTG+ + +GHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 8 RYVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITD 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
FL K +F+++ D F ++ + ++IHNAAFDVGF++ E +LLG ++ ++Y +
Sbjct: 68 AFLVGKPRFADVADEFFEFIQGATLVIHNAAFDVGFINNEFALLGQQHRADVSQYCT-VL 126
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTLL+AR H G+RNSLDALC RY+I R LHG LLD+ELLA+VYLAMT GQ++L+
Sbjct: 127 DTLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLA 186
Query: 180 -----PKINNSNNIETKI-KIPNNIP--IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + ++I +I P + +AN+ EL H L+ I K + G +W+
Sbjct: 187 GHGADAEGDGQAGGGSEIRRITGRAPGRVIMANAQELEAHAERLAAIAKSAGGPSMWQ 244
>gi|410662935|ref|YP_006915306.1| DNA polymerase III subunit epsilon [Simiduia agarivorans SA1 = DSM
21679]
gi|409025292|gb|AFU97576.1| DNA polymerase III subunit epsilon [Simiduia agarivorans SA1 = DSM
21679]
Length = 241
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 149/235 (63%), Gaps = 9/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRIIEIGCVE+ NR++TG + H YINP R+ E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEPAQGHRIIEIGCVELVNRKLTGRHFHVYINPDREVEQGAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL +K +F ++ D FL +V +E++IHNA FDVGF++ E +LL G Y I D
Sbjct: 62 EFLADKPRFHQVADEFLAFVQGAELVIHNAPFDVGFINHEFALLADGKQPIGHYC-GIID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR H G++N+LDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 121 TLAMARAKHPGQKNNLDALCKRYGVDNSQRDLHGALLDSEILADVYLLMTGGQTDLSLSA 180
Query: 181 KINN--SNNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + ++P + + +A+ EL H L IDK S G +W+K
Sbjct: 181 DSEDKKAGGVTGIRRLPAGRRPLTVVMASEQELALHEAKLDGIDKKSGG-AVWRK 234
>gi|302187967|ref|ZP_07264640.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
syringae 642]
gi|422640423|ref|ZP_16703850.1| DNA polymerase III subunit epsilon [Pseudomonas syringae Cit 7]
gi|422674848|ref|ZP_16734198.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aceris
str. M302273]
gi|440746719|ref|ZP_20925999.1| DNA polymerase III subunit epsilon [Pseudomonas syringae BRIP39023]
gi|330952814|gb|EGH53074.1| DNA polymerase III subunit epsilon [Pseudomonas syringae Cit 7]
gi|330972572|gb|EGH72638.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aceris
str. M302273]
gi|440370979|gb|ELQ07844.1| DNA polymerase III subunit epsilon [Pseudomonas syringae BRIP39023]
Length = 259
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 156/240 (65%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS-IL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINN---------SNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ + E + + P ++ A+ +EL +H + +S I K +W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247
>gi|388467218|ref|ZP_10141428.1| DNA polymerase III, epsilon subunit [Pseudomonas synxantha BG33R]
gi|388010798|gb|EIK71985.1| DNA polymerase III, epsilon subunit [Pseudomonas synxantha BG33R]
Length = 248
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 154/241 (63%), Gaps = 13/241 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P RDS++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPDRDSDEGAIGVHGITD 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FLK K +F+E+ D F +++ +++IIHNAAFD+GF++ E +L+G ++ T D
Sbjct: 64 EFLKGKPRFAEVADEFFEFINGAQLIIHNAAFDIGFINNEFALMGQTDRADISQHCTILD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 124 TLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLAG 183
Query: 181 KINN-SNNIETKIKIPNNI----------PIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ S + E P+ I PI A+ +L +H L I K + +W
Sbjct: 184 NASDGSGSAEGSGNRPSEIRRLPADRKPTPIIRASEQDLAEHVARLEAIAKAAGAPALWT 243
Query: 230 K 230
+
Sbjct: 244 Q 244
>gi|237807686|ref|YP_002892126.1| DNA polymerase III subunit epsilon [Tolumonas auensis DSM 9187]
gi|237499947|gb|ACQ92540.1| DNA polymerase III, epsilon subunit [Tolumonas auensis DSM 9187]
Length = 249
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 155/239 (64%), Gaps = 13/239 (5%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R+++LD ETTG+N + GHRIIEIGCVE+ NR++TGN+ H YI P R ++ A+ +
Sbjct: 8 RYVILDTETTGMNQSGGPVYIGHRIIEIGCVEVINRRLTGNHYHVYIKPDRLVDEEAIRV 67
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR 117
HG+T FL +K F+ I F +++ +E++IHNA+FDVGF+D E + LG++ K I R
Sbjct: 68 HGITDAFLADKPPFAAIAQEFRDFIRGAELVIHNASFDVGFIDHEFNKLGWTERVKDICR 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +AR GKRNSLDALC R+ I HRTLHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 128 VTDSLALARGQFPGKRNSLDALCTRFGIDNSHRTLHGALLDAEILADVYLLMTGGQTRLE 187
Query: 178 FKPKINNSNNIETK-------IKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+N++N+ + I+ ++ + A+++EL H L + K G C+W+
Sbjct: 188 LHNTVNDNNSASSASAQQLKMIQRNGSLKVLSASADELAAHEKRLDLVAK-KGGCCLWR 245
>gi|66045009|ref|YP_234850.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
syringae B728a]
gi|63255716|gb|AAY36812.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
syringae B728a]
Length = 259
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 156/240 (65%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS-IL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINN---------SNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ + E + + P ++ A+ +EL +H + +S I K +W
Sbjct: 188 GNASDGNGSGEGSGNRGSEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247
>gi|253996734|ref|YP_003048798.1| DNA polymerase III subunit epsilon [Methylotenera mobilis JLW8]
gi|253983413|gb|ACT48271.1| DNA polymerase III, epsilon subunit [Methylotenera mobilis JLW8]
Length = 227
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 100/226 (44%), Positives = 149/226 (65%), Gaps = 2/226 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL GHR+IEI VE+ NR++T ++ HYY+NP RD + A +HG++
Sbjct: 2 RQIFLDTETTGLYHAQGHRVIEIAAVEVVNRRLTKHHFHYYLNPDRDIDPGAQEVHGISL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K +F++I + + +++++E+I+HNA FDVGFL+ EL L+G + ++TDTL
Sbjct: 62 EFLQDKPRFADIANELITFIADAELIMHNAPFDVGFLNCELGLIGQKKVEEISAKVTDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+++ G+RN+LDALC + I RTLHG LLDAELLA+VY+AMTRGQ +L
Sbjct: 122 KIAKEMRPGQRNNLDALCKYFGIDNSKRTLHGALLDAELLADVYMAMTRGQDSLMIALDQ 181
Query: 183 NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ +E + +KLANS EL H L+ + K +G C+W
Sbjct: 182 PSHETVEVSAVSHAPLQVKLANSTELADHEAYLAGLAK--SGNCVW 225
>gi|398957978|ref|ZP_10677455.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM33]
gi|426409779|ref|YP_007029878.1| DNA polymerase III subunit epsilon [Pseudomonas sp. UW4]
gi|398147318|gb|EJM36029.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM33]
gi|426267996|gb|AFY20073.1| DNA polymerase III subunit epsilon [Pseudomonas sp. UW4]
Length = 252
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 155/239 (64%), Gaps = 13/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL K +F+E+ + F ++ +++IIHNAAFDVGF++ E +L+G + T D
Sbjct: 64 EFLVGKPRFAEVAEEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQQDRADITQHCTILD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 124 TLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLAG 183
Query: 181 KINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ ++L +H L I K + +W
Sbjct: 184 NASDGNGSGEGADNSATEIRRLPADRQPTRIIRASEDDLARHAARLEIIGKSAGAPALW 242
>gi|50122261|ref|YP_051428.1| DNA polymerase III subunit epsilon [Pectobacterium atrosepticum
SCRI1043]
gi|49612787|emb|CAG76237.1| DNA polymerase III, epsilon chain [Pectobacterium atrosepticum
SCRI1043]
Length = 245
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 155/238 (65%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG + H YI P R + A IH
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIKPDRLVDPEAYNIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K ++++ D+FL+++ +E++IHNA FD+GF+D E LL + T+ +
Sbjct: 67 GISDEFLADKPTYADVADDFLDFIRGAELVIHNATFDIGFMDYEFRLLNRNIPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MARKI GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLFMARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLT 186
Query: 178 FK-----PKINNSNNIETKIKIPNN-IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + N SN +I P + + + A+ EL+ H L + K G C+W+
Sbjct: 187 FSMEGEAQRQNESNETIQRIVRPQSALKVLYADETELLAHEQRLDLVAK-KGGSCLWR 243
>gi|88703294|ref|ZP_01101010.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71]
gi|88702008|gb|EAQ99111.1| DNA polymerase III, epsilon chain [Congregibacter litoralis KT71]
Length = 240
Score = 213 bits (541), Expect = 6e-53, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 146/236 (61%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL + GHRIIEIGCVE++NRQ+TG + H YINP RD + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEVSQGHRIIEIGCVEMENRQLTGRHFHRYINPERDIDAGAIEVHGITA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFT-KYIYRITDT 121
FL +K FS + +F+++V +E+IIHNA FD+GFLD ELS S ITDT
Sbjct: 62 TFLADKPVFSAVAKDFIDFVDGAELIIHNAPFDIGFLDSELSRWDASALPLAQRCDITDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L+MAR H G+RNSLDALC RY + R LHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 122 LIMARSRHPGQRNSLDALCGRYGVDNSSRELHGALLDAEILADVYLTMTGGQTALALGGN 181
Query: 182 INNSNNIETKI----KIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ N ++ ++P + +P+ + EL H L I + +W++
Sbjct: 182 -DDDNQGRARVRGLRRLPADRVRLPVIQPSDEELAAHEGQLDSI-AAAGAEPLWRQ 235
>gi|254480788|ref|ZP_05094035.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
HTCC2148]
gi|214039371|gb|EEB80031.1| DNA polymerase III, epsilon subunit [marine gamma proteobacterium
HTCC2148]
Length = 244
Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 146/239 (61%), Gaps = 14/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL + GHRIIEIGCVE+ R++TGN+ H YINP R+ ++ A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEVSQGHRIIEIGCVELDTRRLTGNHYHQYINPNREIDQGAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY-SNFTKYIYRITDT 121
+FLK+K F + FL +V SE++IHNA FD+GFL+ E+ L + + +I DT
Sbjct: 62 EFLKDKPSFERVFREFLEFVEGSELVIHNAPFDLGFLNSEIQRLEPDAPRLEDRCKIVDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L+MAR H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ+ L
Sbjct: 122 LVMARGKHPGQRNSLDALCQRYGVDNSQRDLHGALLDSEILADVYLLMTGGQTALQLS-- 179
Query: 182 INNSNNIETKIKIPNNI----------PIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+N + E+ I P+ A++ EL H L I S G+ +WK+
Sbjct: 180 -DNDSGAESGASRSERIIRLDAGRQALPVIAASTEELAAHEAQLEAISSASGGKVLWKE 237
>gi|410625152|ref|ZP_11335940.1| DNA polymerase III subunit epsilon [Glaciecola mesophila KMM 241]
gi|410155283|dbj|GAC22709.1| DNA polymerase III subunit epsilon [Glaciecola mesophila KMM 241]
Length = 235
Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 157/235 (66%), Gaps = 8/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGN H Y+NP R E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPRQGHRIIEIGCVELLNRRLTGNTFHVYVNPQRLIEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG--YSNFTKYIYRITD 120
++L +K F++I +F+ ++S ++++IHNA FDVGF+D E + + T + + D
Sbjct: 62 EYLLDKPLFADIAADFVKFISGAQLVIHNAPFDVGFMDHEFARVAAMAGKKTSDMCTVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR+IH G++N+LDALC RY I HR LHG LLD+E+LA+VYL MT GQ++LN
Sbjct: 122 TLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTDLNLSG 181
Query: 181 KINN--SNNIETKIKIP---NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K N+ + +E ++ N + + A ++ELV+H L ++K G C+W++
Sbjct: 182 KSNSEGGSQVERIRRLDPQLNQLKVLRATADELVEHEKRLDLVNK-EGGSCLWRE 235
>gi|392546170|ref|ZP_10293307.1| DNA polymerase III subunit epsilon [Pseudoalteromonas rubra ATCC
29570]
Length = 236
Score = 213 bits (541), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 156/238 (65%), Gaps = 10/238 (4%)
Query: 1 MH-RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHG 59
MH R IVLD ETTG++ +GHRIIEIGCVE+ NR++TGNN H YINP R E+ A+ +HG
Sbjct: 1 MHKRQIVLDTETTGIDPKEGHRIIEIGCVELVNRRLTGNNFHVYINPQRSIEEEAIDVHG 60
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYR 117
+T +FL++K F + F +Y+ +E++IHNA FDVGF+D E ++L G++ T +
Sbjct: 61 ITNEFLRDKPFFHHVAQEFYDYIQGAELVIHNAPFDVGFMDHEFAMLNQGFAK-THEVCE 119
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+ DTL+MAR +H G++NSLDALC RY+I RTLHG LLD+E+L++VYLAMT GQ LN
Sbjct: 120 VLDTLVMARDLHPGQKNSLDALCRRYDIDNSKRTLHGALLDSEILSDVYLAMTGGQKKLN 179
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + I + + LA + EL H + ++K + G+ +W++
Sbjct: 180 LAQHNEQAQQGSGGGIRRLSAERAPLNVVLATAEELDAHEARMELVNK-ACGQSLWQQ 236
>gi|420259659|ref|ZP_14762360.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
enterocolitica WA-314]
gi|404512909|gb|EKA26743.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
enterocolitica WA-314]
Length = 260
Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 153/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAYGVH 71
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I FL ++ +E+IIHNAAFD+GF+D E +L T+
Sbjct: 72 GISDEFLADKPTFADITPEFLEFIRGAELIIHNAAFDIGFMDYEFRMLQQDIPKTETFCT 131
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LL+AR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L+
Sbjct: 132 ITDSLLLARRLFPGKRNNLDALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLS 191
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + +S +I+ + + + I A +E+ H L + K G C+W+
Sbjct: 192 FSMEGDQTQNESSEDIQRITRPASGLKIIYATEDEIAAHESRLDLVMK-KGGSCLWR 247
>gi|398873286|ref|ZP_10628547.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM74]
gi|398200135|gb|EJM87061.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM74]
Length = 252
Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 159/240 (66%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ + F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 64 EFLVGKPRFAEVAEEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQQDRADITQHCS-IL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ ++L +H L I K + +W
Sbjct: 183 GNASDGNGSGEGADNSATEIRRLPADRQPTRIIRASEDDLARHAARLEIIGKSAGAPALW 242
>gi|238750479|ref|ZP_04611980.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380]
gi|238711410|gb|EEQ03627.1| DNA polymerase III subunit epsilon [Yersinia rohdei ATCC 43380]
Length = 259
Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 154/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPDRLIDPEAYGVH 71
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I FL ++ +E++IHNAAFD+GF+D E +L T+
Sbjct: 72 GISDEFLADKPTFADITPEFLEFIRGAELVIHNAAFDIGFMDYEFRMLQQDIPKTETFCT 131
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LL+AR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L+
Sbjct: 132 ITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLS 191
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + N+S +I+ + + + I A +EL H L + K G C+W+
Sbjct: 192 FSMEGDQSQNNSSEDIQRITRPASGLKIIYAAEDELKAHESRLDLVMK-KGGSCLWR 247
>gi|375109059|ref|ZP_09755313.1| DNA polymerase III subunit epsilon [Alishewanella jeotgali KCTC
22429]
gi|397171713|ref|ZP_10495112.1| DNA polymerase III subunit epsilon [Alishewanella aestuarii B11]
gi|374571245|gb|EHR42374.1| DNA polymerase III subunit epsilon [Alishewanella jeotgali KCTC
22429]
gi|396086721|gb|EJI84332.1| DNA polymerase III subunit epsilon [Alishewanella aestuarii B11]
Length = 234
Score = 212 bits (540), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 108/232 (46%), Positives = 151/232 (65%), Gaps = 7/232 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG++ +GHRIIEIGCVE+ NR+ TGNN H YINP R+ + A+A+HG+T
Sbjct: 4 RQIILDTETTGISPKEGHRIIEIGCVELVNRRFTGNNFHVYINPEREIDAEAIAVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+ L + KF EI +F Y+ +E++IHNAAFDVGF+D E +LL +Y I D
Sbjct: 64 ERLAAEPKFREIAQSFYQYIQGAELVIHNAAFDVGFIDHEFALLRPALPPVAQYCT-IVD 122
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLL+AR++H G++N+LDALC RY+I+ HRTLHG LLDAE+LA+VYL MT GQ +LN
Sbjct: 123 TLLLARELHPGQKNNLDALCRRYDINNSHRTLHGALLDAEILADVYLLMTGGQVSLNLAA 182
Query: 181 KINNSNNIETK---IKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + I+ + + A+ +E+ H L + K G C+W+
Sbjct: 183 EEQAEQLEQQSPLHIQRQGRLKVIRASESEVAAHESRLDLVQK-KGGTCLWR 233
>gi|402699084|ref|ZP_10847063.1| DNA polymerase III subunit epsilon [Pseudomonas fragi A22]
Length = 252
Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 150/241 (62%), Gaps = 13/241 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHR+IEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRVIEIGCVELMGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL K +F+E+ D F +++ +++IIHNAAFDVGFL+ E +L+G ++ T D
Sbjct: 62 EFLVGKPRFAEVADEFFDFIKGAQLIIHNAAFDVGFLNNEFALIGQTDRADITRHCTILD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 122 TLAMARARHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLAG 181
Query: 181 KINNSNNIETKIKIPNNIPIKL-----------ANSNELVQHNMILSKIDKHSNGRCIWK 229
++ N + I+L A+ ++L +H L I K + G +W
Sbjct: 182 NASDGNGSGEGSGNQASEIIRLSADRQPGRIIRASESDLAEHAARLEAIAKSAGGPSLWA 241
Query: 230 K 230
+
Sbjct: 242 Q 242
>gi|109898679|ref|YP_661934.1| DNA polymerase III subunit epsilon [Pseudoalteromonas atlantica
T6c]
gi|109700960|gb|ABG40880.1| DNA polymerase III, epsilon subunit [Pseudoalteromonas atlantica
T6c]
Length = 235
Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 157/235 (66%), Gaps = 8/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGN H Y+NP R E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPRQGHRIIEIGCVELLNRRLTGNTFHVYVNPQRLIEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG--YSNFTKYIYRITD 120
++L +K F+++ +F+ ++S ++++IHNA FDVGF+D E + + T + + D
Sbjct: 62 EYLLDKPLFADVAADFVKFISGAQLVIHNAPFDVGFMDHEFARVAAMAGKKTSDMCTVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR+IH G++N+LDALC RY I HR LHG LLD+E+LA+VYL MT GQ++LN
Sbjct: 122 TLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTDLNLSG 181
Query: 181 KINN--SNNIETKIKIP---NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K N+ + +E ++ N + + A ++ELV+H L ++K G C+W++
Sbjct: 182 KSNSDGGSQVERIRRLDPQLNQLKVLRATADELVEHEKRLDLVNK-EGGSCLWRE 235
>gi|289679441|ref|ZP_06500331.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
syringae FF5]
gi|422664666|ref|ZP_16724539.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|424066823|ref|ZP_17804285.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|440721419|ref|ZP_20901818.1| DNA polymerase III subunit epsilon [Pseudomonas syringae BRIP34876]
gi|440724466|ref|ZP_20904748.1| DNA polymerase III subunit epsilon [Pseudomonas syringae BRIP34881]
gi|443644713|ref|ZP_21128563.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
syringae B64]
gi|330975085|gb|EGH75151.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. aptata
str. DSM 50252]
gi|408001908|gb|EKG42184.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
avellanae str. ISPaVe013]
gi|440363840|gb|ELQ00999.1| DNA polymerase III subunit epsilon [Pseudomonas syringae BRIP34876]
gi|440370110|gb|ELQ07056.1| DNA polymerase III subunit epsilon [Pseudomonas syringae BRIP34881]
gi|443284730|gb|ELS43735.1| DNA polymerase III, epsilon subunit [Pseudomonas syringae pv.
syringae B64]
Length = 259
Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 157/240 (65%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRI+EIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RSIVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ +
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS-VL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINNSNNIETKI--------KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N ++P + P ++ A+ +EL +H + +S I K +W
Sbjct: 188 GNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247
>gi|254514367|ref|ZP_05126428.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3]
gi|219676610|gb|EED32975.1| DNA polymerase III, epsilon subunit [gamma proteobacterium NOR5-3]
Length = 240
Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 144/234 (61%), Gaps = 8/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL + GHRIIEIGCVE++NR +TG + H YINP RD + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEVSQGHRIIEIGCVELQNRLLTGRHFHRYINPERDIDAGAIEVHGITA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFT-KYIYRITDT 121
FL +K FS + +F+++V +E+IIHNA FD+GFLD ELS + + ITDT
Sbjct: 62 TFLADKPVFSAVAKDFVDFVDGAELIIHNAPFDIGFLDSELSRIDPAALPLAQRCEITDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L+MAR H G+RNSLDALC RY + R LHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 122 LVMARSRHPGQRNSLDALCQRYAVDNSSRDLHGALLDAEILADVYLTMTGGQTALALGGD 181
Query: 182 INNSNNIETK---IKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+S I++P N +P+ + +EL H L I + +W+
Sbjct: 182 DGDSQGRTRPRGLIRLPENRPRLPVIEPSDSELAAHEAQLDSI-AAAGTEPLWR 234
>gi|283783999|ref|YP_003363864.1| DNA polymerase III subunit epsilon [Citrobacter rodentium ICC168]
gi|282947453|emb|CBG87000.1| DNA polymerase III epsilon subunit [Citrobacter rodentium ICC168]
Length = 243
Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHIYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D FL+Y+ +E++IHNA+FD+GF+D E S L T +
Sbjct: 67 GIADEFLLDKPTFADVADEFLDYIRGAELVIHNASFDIGFMDYEFSKLNRDIPKTSSFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQTSMT 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + A+ E+ H L ++K G C+W+
Sbjct: 187 FAMEGETQQQQGEETIQRLVRQARKLRVVFASDEEVAAHEARLDLVEK-KGGSCLWR 242
>gi|422016495|ref|ZP_16363078.1| DNA polymerase III subunit epsilon [Providencia burhodogranariea
DSM 19968]
gi|414092694|gb|EKT54367.1| DNA polymerase III subunit epsilon [Providencia burhodogranariea
DSM 19968]
Length = 249
Score = 212 bits (540), Expect = 9e-53, Method: Compositional matrix adjust.
Identities = 111/238 (46%), Positives = 156/238 (65%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A IH
Sbjct: 7 RQIVLDTETTGMNKLGIHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAFEIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F+EI D F+ ++ +E+IIHNA FD+GF+D E L T +
Sbjct: 67 GISDEFLQDKPVFAEIADEFIEFIRGAELIIHNAPFDIGFMDHEFRKLNKGIPPTADFCQ 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L+MAR+I GKRN+LDALCDRY I R LHG LLDAE+L++VYLAMT GQ++L
Sbjct: 127 ITDSLVMARQIFPGKRNNLDALCDRYLIDNTKRMLHGALLDAEILSDVYLAMTGGQTSLA 186
Query: 178 FKPKINNSNN--IE--TKIKIPNN-IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F ++SN +E +I+ P++ + + A +EL +H L +DK S C+W++
Sbjct: 187 FSMDNDSSNENYVEQVQRIERPSSGLKVLYATDDELAEHEKRLDIVDKKSGNSCLWRQ 244
>gi|398888521|ref|ZP_10642815.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM55]
gi|398190672|gb|EJM77890.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM55]
Length = 252
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 155/239 (64%), Gaps = 13/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL K +F+E+ + F ++ +++IIHNAAFDVGF++ E +L+G + T D
Sbjct: 64 EFLVGKPRFAEVAEEFFEFIKGAQLIIHNAAFDVGFINNEFALMGRQDRADITQHCTILD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 124 TLIMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLAG 183
Query: 181 KINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ ++L +H L I K + +W
Sbjct: 184 NASDGNGSGEGADNSATEIRRLPADRQPTRIIRASEDDLARHAARLEIISKSAGAPALW 242
>gi|406979301|gb|EKE01112.1| hypothetical protein ACD_21C00211G0001 [uncultured bacterium]
Length = 237
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/233 (46%), Positives = 154/233 (66%), Gaps = 7/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL GHRIIEIGCVE+ +RQ T NN H YINP R+ E ALAIHG+T
Sbjct: 2 RQIILDTETTGLEPEKGHRIIEIGCVELIDRQFTSNNFHRYINPQREVEAEALAIHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR-ITDT 121
+FL +K F+ ++D+FL +++ +E+I HNA+FD+GF++ E+ LL + + Y + DT
Sbjct: 62 EFLSDKPTFANVLDDFLGFINGAELIAHNASFDIGFINHEIRLLAKNAESLDAYATVFDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L +ARK+ G+RN+LDALC RY + R LHG LLDA+LLAEVYL MT GQ +L +
Sbjct: 122 LALARKMFPGQRNTLDALCKRYKVDLSARNLHGALLDAKLLAEVYLLMTGGQVSLFGDDE 181
Query: 182 INNSNNIETKIKIPNN-----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
N ++ + NN +PI AN++E+ H L+ I K++ +C+W+
Sbjct: 182 FNLADEATMALTQKNNKDRSPLPIISANTDEIKAHEDFLAIIKKNAK-KCLWE 233
>gi|407893514|ref|ZP_11152544.1| DNA polymerase III subunit epsilon [Diplorickettsia massiliensis
20B]
Length = 240
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 151/240 (62%), Gaps = 14/240 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG + +GHRIIEIGC+E+ +R++T H Y+NP R+SE ALA+HGLTT
Sbjct: 2 RQIILDTETTGREVNEGHRIIEIGCLEMVDRRLTERYFHRYVNPQRESEAGALAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL++K F I +F+ +V +E+IIHNA FD+ FLD EL+L Y T Y R+ D
Sbjct: 62 EFLQDKPLFPMIAHDFIAFVEGAELIIHNAPFDLSFLDQELALCQKDYKKMTDYC-RVLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS------ 174
TL +AR++H G+RNSLDALC RY I R HG L+D ELLA VYLAMT GQ+
Sbjct: 121 TLPLARQLHPGQRNSLDALCKRYAIDLSKRERHGALIDVELLARVYLAMTGGQTSLFDGV 180
Query: 175 ---NLNFKPKINNSNNIETKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+L + +++ K+ P +PI A E H+ IL ++ K +GRC+W +
Sbjct: 181 HPIDLTVDYAKSVTDHTSNKVSDPFTELPILAATLEECHAHHHILKQL-KEQSGRCLWSQ 239
>gi|77360888|ref|YP_340463.1| DNA polymerase III subunit epsilon [Pseudoalteromonas haloplanktis
TAC125]
gi|76875799|emb|CAI87020.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Pseudoalteromonas haloplanktis
TAC125]
Length = 237
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 153/234 (65%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGNN H YINP R+SE+ A+ +HG+T
Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNNFHVYINPQRNSEEEAIDVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL++K F +I F +Y+ +E++IHNA FD+G +D E SLL GY T ++ D
Sbjct: 64 EFLRDKPLFHQIAQEFFDYIKGAELVIHNAPFDIGHMDNEFSLLNQGYPK-TATFCQVLD 122
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR +H G++N+LDALC RY++ RTLHG LLD+E+LA+VYLAMT GQ LN
Sbjct: 123 TLKMARDLHPGQKNNLDALCRRYDVDNAKRTLHGALLDSEILADVYLAMTGGQVKLNLNQ 182
Query: 181 KINNSNNIET---KIKIPNNIPIKLANSNELVQ--HNMILSKIDKHSNGRCIWK 229
N+ + + + P+ + +++E Q H L ++ + G CIW+
Sbjct: 183 NKNDDTDQQKGGIRRLSAQRAPLVVLSASEAEQAAHEARLDIVN-NEGGHCIWR 235
>gi|418291744|ref|ZP_12903710.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri ATCC 14405
= CCUG 16156]
gi|379063193|gb|EHY75936.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri ATCC 14405
= CCUG 16156]
Length = 237
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 151/234 (64%), Gaps = 9/234 (3%)
Query: 6 VLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFL 65
+LD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+ ++ A+A+HG+T +FL
Sbjct: 1 MLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPDREVDEGAIAVHGITNEFL 60
Query: 66 KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI--YRITDTLL 123
+K +F E+ D F ++ S+++IHNAAFD+GF++ E +LLG + + + DTLL
Sbjct: 61 TDKPRFREVADEFFEFIKGSQLVIHNAAFDLGFINNEFALLGQQDRAEITDHCSVLDTLL 120
Query: 124 MARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKIN 183
MAR+ H G+RNSLDALC RY + R LHG LLDAE+LA+V+L MT GQ+NL+
Sbjct: 121 MARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNLSLAGDGE 180
Query: 184 NSNNIETKI----KIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+S+ + ++P + P + A+ EL H ++ I+K + +W +
Sbjct: 181 SSDGGRQQPSPIRRLPADRPRTAVLRASEEELAAHVARMAAIEKAAGATPLWAQ 234
>gi|422023804|ref|ZP_16370306.1| DNA polymerase III subunit epsilon [Providencia sneebia DSM 19967]
gi|414091819|gb|EKT53500.1| DNA polymerase III subunit epsilon [Providencia sneebia DSM 19967]
Length = 256
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 109/239 (45%), Positives = 156/239 (65%), Gaps = 13/239 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPNRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G++ +FL++K F++I D F+ ++ +E+IIHNA FD+GF+D E L G +++
Sbjct: 67 GISDEFLQDKPVFADIADEFIEFIRGAELIIHNAPFDIGFMDYEFRKLNKGIPPTSEFC- 125
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITD+L+MAR I GKRNSLDALCDRY I R LHG LLDAE+L++VYLAMT GQ++L
Sbjct: 126 QITDSLVMARHIFPGKRNSLDALCDRYLIDNTKRVLHGALLDAEILSDVYLAMTGGQTSL 185
Query: 177 NFKPKINNSNNIE-----TKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + N+S+N + +I+ P + + + A + EL +H L +DK C+W+
Sbjct: 186 AFSMEGNSSSNEQFVEEIQRIERPVSGLKVLYATAEELAEHEKRLDLVDKKHGKPCLWR 244
>gi|260913733|ref|ZP_05920209.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
dagmatis ATCC 43325]
gi|260632272|gb|EEX50447.1| DNA-directed DNA polymerase III epsilon subunit [Pasteurella
dagmatis ATCC 43325]
Length = 253
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 150/237 (63%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N +GH IIEIG VE+ NR++TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPDRPVDPDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K F+EI F+ Y+ +E++IHNA+FD+GF+D E S L T I I
Sbjct: 69 GITDEMLADKPTFNEIAQQFIEYIQGAELLIHNASFDIGFMDYEFSKLNIGLNTSEICLI 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GKRNSLDALCDR I RTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 129 TDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I +++ + ++ + +EL H + ++K S G C+W+K
Sbjct: 189 ESEPEIIVATTQEEVQSAVVFSQDLKKLMPTEDELQAHIEYIKLLNKKSKGNCLWEK 245
>gi|385331543|ref|YP_005885494.1| DNA polymerase III subunit epsilon [Marinobacter adhaerens HP15]
gi|311694693|gb|ADP97566.1| DNA polymerase 3, epsilon subunit [Marinobacter adhaerens HP15]
Length = 239
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 148/231 (64%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHRIIEIGCVE+ RQ+TG N H YINP R+ E A+ +HG+T
Sbjct: 5 RQIVLDTETTGIDPAEGHRIIEIGCVELMERQLTGRNYHVYINPDREVEAEAITVHGITN 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+EI D F ++ +E++IHNAAFDVGF+D E + L T I D+L
Sbjct: 65 EFLADKPRFAEIADEFFEFIKGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGIVDSL 124
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+AR H G++N+LDALC RY + +R LHG LLDAE+LA+VYL +T GQ+ L+
Sbjct: 125 AIARARHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLLTGGQTALSLDAGS 184
Query: 183 NNSNNIETKIKIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
N ++P + P+ + A+S+E H +S ++K + G +W K
Sbjct: 185 ENGGGNGGIRRLPADRAPLSVVRASSSEAEAHQEFMSLLEKQA-GETVWGK 234
>gi|404399571|ref|ZP_10991155.1| DNA polymerase III subunit epsilon [Pseudomonas fuscovaginae
UPB0736]
Length = 247
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 153/240 (63%), Gaps = 13/240 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVEI R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVEIIGRRLTGRHFHVYLQPDRESDEGAIGVHGITD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F E+ D F ++ S++IIHNAAFDVGF++ E +L G ++ +++ I
Sbjct: 62 QFLIGKPRFGEVADEFFEFIKGSQLIIHNAAFDVGFINNEFALAGLHDRADISQHCS-IL 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTLLMAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 121 DTLLMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLA 180
Query: 180 PKINNSNNI-------ETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ E + + P ++ A+ +EL +H L I K + G +W +
Sbjct: 181 GNTSDGAGEGGAGQASEIRRLSADRKPGRIIRASESELAEHQARLEIIAKSAGGPALWTQ 240
>gi|422630364|ref|ZP_16695562.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. pisi
str. 1704B]
gi|330939732|gb|EGH43019.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv. pisi
str. 1704B]
Length = 259
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 157/240 (65%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRI+EIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RAVVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ +
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS-VL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINNSNNIETKI--------KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N ++P + P ++ A+ +EL +H + +S I K +W
Sbjct: 188 GNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247
>gi|409394826|ref|ZP_11245973.1| DNA polymerase III subunit epsilon [Pseudomonas sp. Chol1]
gi|409120475|gb|EKM96819.1| DNA polymerase III subunit epsilon [Pseudomonas sp. Chol1]
Length = 242
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 100/238 (42%), Positives = 150/238 (63%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI--YRITD 120
+FL +K +F ++ D F ++ +++++IHNAAFD+GF++ E +LLG + + D
Sbjct: 62 EFLADKPRFRDVADEFFEFIRDAQLVIHNAAFDIGFINNEFALLGQQERAEITDHCSVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLLMAR+ H G+RNSLDALC RY + R LHG LLDAE+LA+V+L MT GQ+NL+
Sbjct: 122 TLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNLSLAG 181
Query: 181 KINNSNNIETKIKIP-NNIP-------IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ N P +P + A+ E+ H L+ I+K S +W +
Sbjct: 182 DGADTGNGGRPQPSPIRRLPADRQRTIVLRASDEEMAAHAARLAVIEKASGAAPLWAQ 239
>gi|251788641|ref|YP_003003362.1| DNA polymerase III subunit epsilon [Dickeya zeae Ech1591]
gi|247537262|gb|ACT05883.1| DNA polymerase III, epsilon subunit [Dickeya zeae Ech1591]
Length = 244
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 155/238 (65%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG + H Y+ P R + A IH
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYLRPDRLVDPEAYNIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K ++++ D+FL+++ +E++IHNA+FD+GF+D E LLG T+
Sbjct: 67 GISDEFLVDKPTYADVADDFLDFIRGAELVIHNASFDIGFMDYEFRLLGRDIPKTETFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMAR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLLMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLA 186
Query: 178 F------KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + + I+ + + + + A+ EL+ H L I K G C+W+
Sbjct: 187 FSMEGEGQQQAVQTETIQRISRPASALAVLYASDEELIAHEQRLDLIMK-KGGSCLWR 243
>gi|315126186|ref|YP_004068189.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
gi|315014700|gb|ADT68038.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. SM9913]
Length = 237
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 110/234 (47%), Positives = 156/234 (66%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGNN H YINP R E+ A+ +HG+T
Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELMNRRLTGNNFHVYINPQRSIEEEAIDVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL++K F +I F +Y+ ++E++IHNA FD+G +D E +LL GY N T + D
Sbjct: 64 EFLRDKPLFRDIAQEFFDYIKDAELVIHNAPFDIGHMDNEFALLNQGYQN-THDFCGVLD 122
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-K 179
TL MAR +H G++N+LDALC RY++ RTLHG LLD+E+LA+VYLAMT GQ LN +
Sbjct: 123 TLKMARDLHPGQKNNLDALCRRYDVDNTKRTLHGALLDSEILADVYLAMTGGQVKLNLNQ 182
Query: 180 PKINNSNNIETKIKIPNN--IPIKLANSNELVQ--HNMILSKIDKHSNGRCIWK 229
K ++S + + I+ N+ P+ + ++E Q H L + K G C+W+
Sbjct: 183 NKDDSSEDQKGGIRRLNSDRAPLVVVAASEAEQSAHQSRLDIVQKEG-GHCLWR 235
>gi|308185776|ref|YP_003929907.1| DNA polymerase III subunit epsilon [Pantoea vagans C9-1]
gi|308056286|gb|ADO08458.1| DNA polymerase III epsilon subunit [Pantoea vagans C9-1]
Length = 243
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K FSEI D FL+Y+ +E++IHNA FD+GF+D E S L T+ +
Sbjct: 67 GIADEFLADKPAFSEIADEFLDYIRGAELVIHNAPFDIGFMDYEFSKLNRGIEKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS--- 174
ITD+L +AR++ GKRNSLDALC RY I RTLHG LLDAE+LAEV+L MT GQ+
Sbjct: 127 ITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFLTMTGGQTSLS 186
Query: 175 --NLNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + +I+ ++ + + + A+ E+V H L + K G C+W+
Sbjct: 187 FLSESESARQAQGESIQRIVRPASALRVVTASEEEVVAHESRLDLVMK-KGGSCLWR 242
>gi|429109040|ref|ZP_19170810.1| DNA polymerase III epsilon subunit [Cronobacter malonaticus 507]
gi|426310197|emb|CCJ96923.1| DNA polymerase III epsilon subunit [Cronobacter malonaticus 507]
Length = 243
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFMVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL NK F ++VD+FL+Y+ +E++IHNA+FD+GF+D E +L T+ +
Sbjct: 67 GISDEFLLNKPVFGDVVDDFLDYIRGAELVIHNASFDIGFMDYEFGMLNRGIPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLD+++LA+VYLAMT GQ+++
Sbjct: 127 ITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDSQILADVYLAMTGGQTSIA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A EL H L + K G C W+
Sbjct: 187 FAMEGDGQQQQGDTGIQRVVRQASRLKVVRACDEELAAHESRLDLVQK-KGGSCRWR 242
>gi|424071488|ref|ZP_17808912.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
gi|407998818|gb|EKG39217.1| DNA polymerase III subunit epsilon [Pseudomonas syringae pv.
avellanae str. ISPaVe037]
Length = 259
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 157/240 (65%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRI+EIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RAVVLDTETTGMPVTDGHRIVEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ +
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHCS-VL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMTGGQTSLSLA 187
Query: 180 PKINNSNNIETKI--------KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N ++P + P ++ A+ +EL +H + +S I K +W
Sbjct: 188 GNASDGNGSGEGSGNRASEIRRLPADRKPCRIIRASESELAEHEVRMSTIAKACGAPPLW 247
>gi|398929576|ref|ZP_10664037.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM48]
gi|398166961|gb|EJM55048.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM48]
Length = 258
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 155/239 (64%), Gaps = 13/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 10 RMVVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 69
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL K +F+E+ + F ++ +++IIHNAAFDVGF++ E +L+G + T D
Sbjct: 70 EFLVGKPRFAEVAEEFFEFIKGAQLIIHNAAFDVGFINNEFALMGQQDRADITQHCTILD 129
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 130 TLIMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLTMTGGQTSLSLAG 189
Query: 181 KINNSN-------NIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ N N T+I ++P + P ++ A+ ++L +H L I K + +W
Sbjct: 190 NASDGNGSGEGADNSATEIRRLPADRQPTRIIRASEDDLARHAARLEIIGKSAGAPALW 248
>gi|401675734|ref|ZP_10807722.1| DNA polymerase III, epsilon subunit [Enterobacter sp. SST3]
gi|400217036|gb|EJO47934.1| DNA polymerase III, epsilon subunit [Enterobacter sp. SST3]
Length = 246
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D FL Y+ +E++IHNA+FD+GF+D E S L T +
Sbjct: 70 GIADEFLLDKPTFADVADEFLEYIRGAELVIHNASFDIGFMDYEFSKLNRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQTSMK 189
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + LA+ EL+ H L + K G C+W+
Sbjct: 190 FSMENESQQTQGEAGIQRVVRQVSRLRVVLASDEELLDHESRLDLVQK-KGGSCLWR 245
>gi|300112990|ref|YP_003759565.1| DNA polymerase III subunit epsilon [Nitrosococcus watsonii C-113]
gi|299538927|gb|ADJ27244.1| DNA polymerase III, epsilon subunit [Nitrosococcus watsonii C-113]
Length = 243
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 152/237 (64%), Gaps = 10/237 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL +GHRIIEIG VE+ R+ TG H Y+NP R+ ++ AL +HGL+
Sbjct: 2 RQIILDTETTGLEPKEGHRIIEIGGVELNCRRRTGQTFHCYLNPEREVDEGALKVHGLSN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY--RITD 120
+FL +K +F EI + FL ++ +E++IHNA FDVGFLD EL LLG SN+ K ++ D
Sbjct: 62 EFLSDKPRFIEIAEEFLAFIKGAELVIHNAPFDVGFLDHELYLLG-SNWGKVSVNCQVLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +AR+ H G++N+LDALC RY I R LHG LLDAE+LA VYLAMT GQ +L+
Sbjct: 121 TLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMTGGQVSLSLHE 180
Query: 181 KINNSNNIET-----KIKIPNNIPIKLANSNELVQ--HNMILSKIDKHSNGRCIWKK 230
+NS + + + P+K+A ++ Q H L+ IDK S G C+W +
Sbjct: 181 YGDNSTSSRSGEGNYRPVSAERAPLKIARASREEQRAHEACLTAIDKTSAGACVWHQ 237
>gi|358448996|ref|ZP_09159488.1| DNA polymerase III, epsilon subunit [Marinobacter manganoxydans
MnI7-9]
gi|357226791|gb|EHJ05264.1| DNA polymerase III, epsilon subunit [Marinobacter manganoxydans
MnI7-9]
Length = 236
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 148/231 (64%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHRIIEIGCVE+ RQ+TG N H YINP R+ E A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPAEGHRIIEIGCVELMERQLTGRNYHVYINPDREVEAEAITVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F+EI D F ++ +E++IHNAAFDVGF+D E + L T I D+L
Sbjct: 62 EFLADKPRFAEIADEFFEFIKGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGIVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+AR H G++N+LDALC RY + +R LHG LLDAE+LA+VYL +T GQ+ L+
Sbjct: 122 AIARARHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLLTGGQTALSLDAGS 181
Query: 183 NNSNNIETKIKIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
N ++P + P+ + A+S+E H +S ++K + G +W K
Sbjct: 182 ENGGGNGGIRRLPADRAPLSVVRASSSEAEAHEEFMSLLEKQA-GETVWGK 231
>gi|422010012|ref|ZP_16356994.1| DNA polymerase III subunit epsilon [Providencia rettgeri Dmel1]
gi|414092185|gb|EKT53864.1| DNA polymerase III subunit epsilon [Providencia rettgeri Dmel1]
Length = 253
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 155/238 (65%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F++I D FL ++ +E++IHNA FD+GF+D E L T+
Sbjct: 67 GISDEFLQDKPVFADIADEFLEFIRGAELVIHNAPFDIGFMDYEFRKLNKGIPPTQEFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L++ARK+ GKRN+LDALCDRY I RTLHG LLDAE+L++VYLAMT GQ++L+
Sbjct: 127 ITDSLVLARKLFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQTSLS 186
Query: 178 FKPKINNSNNIE----TKIKIPNN-IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F ++NN + +I+ P + + + A+ E++ H L +DK C+W++
Sbjct: 187 FSMDSESANNEQEYEIQRIERPQSGLRVIFASDEEIIAHEARLDIVDKKGGKPCLWRQ 244
>gi|440759498|ref|ZP_20938634.1| DNA polymerase III epsilon subunit [Pantoea agglomerans 299R]
gi|436426752|gb|ELP24453.1| DNA polymerase III epsilon subunit [Pantoea agglomerans 299R]
Length = 243
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 107/237 (45%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K FSEI D FL+Y+ +E++IHNA FD+GF+D E S L T+ +
Sbjct: 67 GIADEFLADKPAFSEIADEFLDYIRGAELVIHNAPFDIGFMDYEFSKLNRGIEKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS--- 174
ITD+L +AR++ GKRNSLDALC RY I RTLHG LLDAE+LAEV+L MT GQ+
Sbjct: 127 ITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFLTMTGGQTSLS 186
Query: 175 --NLNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + +I+ ++ + + + A+ E+V H L + K G C+W+
Sbjct: 187 FLSESESAREAQGESIQRIVRPASALRVVTASEEEVVAHESRLDLVMK-KGGSCLWR 242
>gi|294637713|ref|ZP_06715990.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
gi|451965868|ref|ZP_21919123.1| DNA polymerase III subunit epsilon [Edwardsiella tarda NBRC 105688]
gi|291089143|gb|EFE21704.1| DNA polymerase III, epsilon subunit [Edwardsiella tarda ATCC 23685]
gi|451315117|dbj|GAC64485.1| DNA polymerase III subunit epsilon [Edwardsiella tarda NBRC 105688]
Length = 243
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 151/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVINRRLTGRNFHVYLKPDRLVDPEAFMVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ FL + F+++VD FL ++ +E++IHNA FD+GF+D E + LG T+
Sbjct: 67 GISDDFLLGQPSFADVVDEFLEFIRGAELVIHNAPFDIGFMDYEFAKLGRDLPKTETFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L+MAR++ GKRNSLDALC+RY I RTLHG LLDA++LA+VYL MT GQ++L+
Sbjct: 127 ITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTGGQTSLS 186
Query: 178 FKPKINNSNNIETK-----IKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + +++ ++ ++ + + A+ EL H L + K G C+W+
Sbjct: 187 FASEGDSATQVQAAELRRVVRGAQGLRVVYASEAELAAHEQRLDLVQK-KGGSCLWR 242
>gi|429082333|ref|ZP_19145408.1| DNA polymerase III epsilon subunit [Cronobacter condimenti 1330]
gi|426548943|emb|CCJ71449.1| DNA polymerase III epsilon subunit [Cronobacter condimenti 1330]
Length = 241
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 109/235 (46%), Positives = 153/235 (65%), Gaps = 9/235 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGVHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFMVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL NK F ++VD+FL+Y+ +E++IHNA+FD+GF+D E +L T+ +
Sbjct: 67 GISDEFLLNKPVFGDVVDDFLDYIRGAELVIHNASFDIGFMDYEFGMLNRGIPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLD+++LA+VYLAMT GQ+++
Sbjct: 127 ITDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDSQILADVYLAMTGGQTSIA 186
Query: 178 FKPKINNSNNI-ETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + +T I+ +K+ A ELV H L + K G C+W+
Sbjct: 187 FAMEGDGQQQQGDTGIQRVQASRLKVVRACDEELVAHESRLDLVQK-KGGSCLWR 240
>gi|283834499|ref|ZP_06354240.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC
29220]
gi|291070049|gb|EFE08158.1| DNA polymerase III, epsilon subunit [Citrobacter youngae ATCC
29220]
Length = 245
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 147/236 (62%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQVVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D FL+Y+ +E++IHNA+FD+GF+D E + L T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFLDYIRGAELVIHNASFDIGFMDYEFAKLKRDIPKTNEFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+ +
Sbjct: 130 ITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTTMA 189
Query: 178 FK----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + N I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FSMEGDSQQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQK-KGGSCLWR 244
>gi|238799153|ref|ZP_04642606.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
gi|238716994|gb|EEQ08857.1| DNA polymerase III subunit epsilon [Yersinia mollaretii ATCC 43969]
Length = 259
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 154/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYVKPDRLVDPEAYGVH 71
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F+EI FL ++ +E+IIHNAAFD+GF+D E +L T+
Sbjct: 72 GISDEFLADKPTFAEITPEFLEFIRGAELIIHNAAFDIGFMDYEFRMLQQDIPKTETFCT 131
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMAR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L+
Sbjct: 132 ITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLS 191
Query: 178 FKPK-----INNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + ++S++I+ + + + I A +EL H L + K G C+W+
Sbjct: 192 FSMEGDQSQSDSSDDIQRITRPASGLKIIYAAEDELAAHESRLDLVMK-KGGSCLWR 247
>gi|254786149|ref|YP_003073578.1| DNA polymerase III subunit epsilon [Teredinibacter turnerae T7901]
gi|237685417|gb|ACR12681.1| DNA polymerase III, epsilon subunit [Teredinibacter turnerae T7901]
Length = 239
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 152/234 (64%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRIIEIGCVE+ NR++TG + H YI P R+ ++ A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEPEQGHRIIEIGCVELFNRKLTGKHFHQYIRPDREIDEGAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL +K F++I D+FL ++ ++E++IHNA FDVGFLD EL LL G + + + D
Sbjct: 62 EFLADKPVFAQIADDFLTFIGDAELVIHNAPFDVGFLDHELRLLNRGLAPIRERCG-VLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+ AR+ H G++N+LDALC RY + R LHG LLDAE+LA+VYLAMT GQ+ L
Sbjct: 121 TLVYARRKHPGQKNNLDALCKRYMVDNSQRDLHGALLDAEILADVYLAMTGGQTALALGG 180
Query: 181 KINNSNNI---ETKIKIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + + E I++ + P + AN E+ H L+ +DK S G C+W
Sbjct: 181 QQGDGSGGDGEEQIIRLSADRPRLKVLRANDEEIEAHKAKLATLDKASGGNCLW 234
>gi|339488435|ref|YP_004702963.1| DNA polymerase III subunit epsilon [Pseudomonas putida S16]
gi|338839278|gb|AEJ14083.1| DNA polymerase III, epsilon subunit [Pseudomonas putida S16]
Length = 252
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 150/237 (63%), Gaps = 10/237 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ + +GHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 8 RFVILDTETTGMPVSEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITD 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
FL K +F ++ + F ++ + ++IHNAAFDVGF++ E +LLG + T D
Sbjct: 68 AFLVGKPRFGDVAEEFFEFIQGATLVIHNAAFDVGFINNEFALLGQQDRADISQHCTILD 127
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLL+AR H G+RNSLDALC RY+I R LHG LLD+ELLA+VYLAMT GQ++L+
Sbjct: 128 TLLLARARHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLAA 187
Query: 181 KINNSNNIETKI------KIPNNIP--IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + T +I +P + +A++ EL H L+ I K + G +W+
Sbjct: 188 HGAEAGDEGTGAGGSEIRRITGRVPGRVIMASAEELEAHAERLAAIAKSAGGPSMWQ 244
>gi|238893208|ref|YP_002917942.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
gi|238545524|dbj|BAH61875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae NTUH-K2044]
Length = 246
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNA+FD+GF+D E S L T+ +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNASFDIGFMDYEFSKLNRGIGKTETFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 130 ITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTSMA 189
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 190 FSMEGESQQQAGEMGIQRVVRAGSQLRVVYASDEELANHESRLDLVQK-KGGSCLWR 245
>gi|145299712|ref|YP_001142553.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp.
salmonicida A449]
gi|418356841|ref|ZP_12959545.1| DNA polymerase III, epsilon subunit [Aeromonas salmonicida subsp.
salmonicida 01-B526]
gi|142852484|gb|ABO90805.1| DNA polymerase III, epsilon chain [Aeromonas salmonicida subsp.
salmonicida A449]
gi|356689637|gb|EHI54171.1| DNA polymerase III, epsilon subunit [Aeromonas salmonicida subsp.
salmonicida 01-B526]
Length = 244
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 111/240 (46%), Positives = 155/240 (64%), Gaps = 11/240 (4%)
Query: 1 MHRHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
++R I+LD ETTG+N I GHRIIEIGCVE+ NR++TGN+ H YI P R + A+
Sbjct: 6 LNRQIILDTETTGMNTAGGPIYLGHRIIEIGCVEVINRKLTGNHYHVYIKPDRLVDPEAI 65
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI 115
+HG+T FL +K FS+I ++F++++ +E+I HNA FDV F+D E LG + T+ I
Sbjct: 66 QVHGITDVFLADKPSFSQIANDFIDFIRGAELIAHNAPFDVSFMDYEFGKLGLNFKTRDI 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
ITDTL +AR + GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 126 CSITDTLAIARDLFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTK 185
Query: 176 LNFKPKINNSN-NIETKIKI--PNNIPIKLANSNELVQ--HNMILSKIDKHSNGRCIWKK 230
LN + + S N +T I+ N P+K+ + ++ H L + K G C+W++
Sbjct: 186 LNLATESSESERNQDTSIRRLESNRPPLKVVRAGADIEAVHEARLDLVQK-KGGACLWRQ 244
>gi|104782586|ref|YP_609084.1| DNA polymerase III subunit epsilon [Pseudomonas entomophila L48]
gi|95111573|emb|CAK16293.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Pseudomonas entomophila L48]
Length = 251
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 149/238 (62%), Gaps = 11/238 (4%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
R ++LD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 7 QRLVILDTETTGMPVGDGHRIIEIGCVEVMGRRLTGRHFHVYLQPDRESDEGAIGVHGIT 66
Query: 62 TKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRI 118
FL K +F ++ F ++ + ++IHNAAFDVGF++ E +LLG ++ +++ I
Sbjct: 67 DAFLVGKPRFGDVAQEFFEFIEGATLVIHNAAFDVGFINNEFALLGQHDRADISQHCS-I 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL+MAR H G+RNSLDALC RY I R LHG LLD+ELLA+VYLAMT GQ++L+
Sbjct: 126 LDTLMMARSRHPGQRNSLDALCKRYGIDNSGRELHGALLDSELLADVYLAMTGGQTSLSL 185
Query: 179 KPKINNSNNIET-------KIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
S + + +I + +AN EL H L+ I K + G +W+
Sbjct: 186 AGDGAQSEDGQGGTGSEIRRISGRAAGRVIMANEEELQAHAERLAAIAKSAGGPSMWQ 243
>gi|415780839|ref|ZP_11490626.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa14]
gi|323157950|gb|EFZ44052.1| DNA polymerase III, epsilon subunit [Escherichia coli EPECa14]
Length = 246
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 146/232 (62%), Gaps = 10/232 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNG 224
F + I+ ++ + + + A EL H L ++K +
Sbjct: 187 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEELAAHEARLDLVEKKAEA 238
>gi|402782290|ref|YP_006637836.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|402543152|gb|AFQ67301.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae 1084]
Length = 243
Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNA+FD+GF+D E S L T+ +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNASFDIGFMDYEFSKLNRGIGKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 127 ITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTSMA 186
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 187 FSMEGESQQQAGEMGIQRVVRAGSQLRVVYASDEELANHESRLDLVQK-KGGSCLWR 242
>gi|220934132|ref|YP_002513031.1| DNA polymerase III subunit epsilon [Thioalkalivibrio sulfidophilus
HL-EbGr7]
gi|219995442|gb|ACL72044.1| DNA polymerase III, epsilon subunit [Thioalkalivibrio sulfidophilus
HL-EbGr7]
Length = 235
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 106/229 (46%), Positives = 147/229 (64%), Gaps = 9/229 (3%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
HR +VLD ETTGL GHRIIEIGCVE+ R+IT H+Y+ P R+ ++ ALA+HG++
Sbjct: 6 HRQVVLDTETTGLEPAQGHRIIEIGCVELVGRRITRRTFHHYLQPDREIDEGALAVHGIS 65
Query: 62 TKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRIT 119
+FL +K +F+++VD FL ++ +E++IHNA FDVGFLD EL LL T Y I
Sbjct: 66 NEFLADKPRFADVVDEFLEFIRGAELVIHNAPFDVGFLDHELKLLDAARGQVTDY-SSIL 124
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL +AR++H G+RNSLDALC RY I R LHG LLDA +LA+VYLAMT GQ+ L+
Sbjct: 125 DTLDLARRMHPGQRNSLDALCKRYQIDNSGRELHGALLDARILADVYLAMTGGQTTLSLG 184
Query: 180 PK---INNSNNIETKIKIPN---NIPIKLANSNELVQHNMILSKIDKHS 222
+ +N E+ ++P + + + EL H +L K++ S
Sbjct: 185 GEAAGVNGEARAESIRRLPEARARLRVIRPSEAELQAHTRLLEKLNPPS 233
>gi|91775831|ref|YP_545587.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
KT]
gi|91709818|gb|ABE49746.1| DNA polymerase III, epsilon subunit [Methylobacillus flagellatus
KT]
Length = 231
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 150/230 (65%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL GHRIIEI VE+ NR++T N+ H Y+NP R+ +++A +HG+T
Sbjct: 4 RQIFLDTETTGLYHAQGHRIIEIAGVELVNRRLTNNHFHVYLNPDREIDEAAQEVHGITL 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K +F++IVD FL +VS +++IIHNA FD+GFL+ EL+ +G N + I DTL
Sbjct: 64 EFLQDKPRFADIVDEFLQFVSGADLIIHNAPFDIGFLNAELNRVGRQNIEHSVLEIIDTL 123
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA+++ G+RN+LDALC Y I RTLHG LLDAELLA+VY+AMTRGQ +L
Sbjct: 124 KMAKEMRPGQRNNLDALCRHYGIDNSSRTLHGALLDAELLADVYMAMTRGQESLMIDMLD 183
Query: 183 NNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
+I++ + P+ + A+ EL H L + K +G C+W +
Sbjct: 184 QGPIEGSGEIRLTRSKPLLVLTASEAELAAHEEYLQAMSK--SGACVWPQ 231
>gi|431803456|ref|YP_007230359.1| DNA polymerase III subunit epsilon [Pseudomonas putida HB3267]
gi|430794221|gb|AGA74416.1| DNA polymerase III subunit epsilon [Pseudomonas putida HB3267]
Length = 252
Score = 211 bits (536), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 153/237 (64%), Gaps = 10/237 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ + +GHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 8 RFVILDTETTGMPVSEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITD 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
FL K +F ++ + F ++ + ++IHNAAFDVGF++ E +LLG + T D
Sbjct: 68 AFLVGKPRFGDVAEEFFEFIQGATLVIHNAAFDVGFINNEFALLGQQDRADISQHCTILD 127
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-- 178
TLL+AR H G+RNSLDALC RY+I R LHG LLD+ELLA+VYLAMT GQ++L+
Sbjct: 128 TLLLARARHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLAA 187
Query: 179 ---KPKINNSNNIETKI-KIPNNIP--IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + S ++I +I +P + +A++ EL H L+ I K + G +W+
Sbjct: 188 HGAEAEDEGSGAGGSEIRRISGRVPGRVIMASAEELEAHAERLAAIAKSAGGPSMWQ 244
>gi|374702140|ref|ZP_09709010.1| DNA polymerase III subunit epsilon [Pseudomonas sp. S9]
Length = 258
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 154/238 (64%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL + DGHRIIEIGCVE+ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 10 RKVVLDTETTGLPVTDGHRIIEIGCVEMIGRRLTGRHFHVYLQPDREIDEGAIAVHGITN 69
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG---YSNFTKYIYRIT 119
+FL +K F +I D F ++++ +++IIHNA FD+GF++ E L G S+ T + +
Sbjct: 70 EFLTDKPHFKDIADEFFDFINGAQLIIHNAPFDIGFINNEFVLQGRQDRSDLTDHCS-VL 128
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY++ R LHG LLDAE+LA+VYLAMT GQ+NL+
Sbjct: 129 DTLVMARERHPGQRNSLDALCKRYDVDNSGRDLHGALLDAEILADVYLAMTGGQTNLSLA 188
Query: 180 PKINNSNNI-----ETKIK-IPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + T IK + + P I AN EL +H L+ I+K S +W
Sbjct: 189 GDGSEGDGTGGRQQPTPIKRLAADRPMTRIIAANEAELSEHAARLAAIEKSSGALPLW 246
>gi|77166266|ref|YP_344791.1| DNA polymerase III subunit epsilon [Nitrosococcus oceani ATCC
19707]
gi|254435200|ref|ZP_05048707.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27]
gi|76884580|gb|ABA59261.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani ATCC
19707]
gi|207088311|gb|EDZ65583.1| DNA polymerase III, epsilon subunit [Nitrosococcus oceani AFC27]
Length = 243
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 150/239 (62%), Gaps = 14/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL +GHRIIEIG VE+ R+ TG H Y+NP R+ +K AL IHGL+
Sbjct: 2 RQIILDTETTGLEPKEGHRIIEIGGVELSCRRRTGRTFHCYLNPEREVDKGALKIHGLSN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI--YRITD 120
+FL +K +F EI + FL ++ +E++IHNA FDVGFLD EL LLG S + K ++ D
Sbjct: 62 EFLSDKPRFIEIAEEFLAFIEGAELVIHNAPFDVGFLDHELCLLG-SKWGKISTDCQVLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +AR+ H G++N+LDALC RY I R LHG LLDAE+LA VYLAMT GQ +L+
Sbjct: 121 TLQLARQRHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILAGVYLAMTGGQVSLSLHE 180
Query: 181 KINNSNNIETKIKIPNNIPIKL---------ANSNELVQHNMILSKIDKHSNGRCIWKK 230
N + ++ N P+ A+ E + H+ L+ IDK S G C+W++
Sbjct: 181 Y--GDNGLPFRVGGGNYRPVSAERASLTIARASREERMAHDARLTAIDKASGGACLWRQ 237
>gi|419953828|ref|ZP_14469971.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri TS44]
gi|387969517|gb|EIK53799.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri TS44]
Length = 242
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 150/238 (63%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K +F E+ D F ++ +++++IHNAAFD+GF++ E +LLG + T D
Sbjct: 62 EFLADKPRFREVADEFFEFIRDAQLVIHNAAFDIGFINNEFALLGQQERAEITDHCTVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLLMAR+ H G+RNSLDALC RY + R LHG LLDAE+LA+V+L MT GQ+NL+
Sbjct: 122 TLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNLSLAG 181
Query: 181 KINNSNNIETKIKIP-NNIP-------IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ N P +P + A+ E+ H L+ I+K S +W +
Sbjct: 182 DGADAGNGGRPQPSPIRRLPADRQRTIVLRASDAEMAAHAARLAVIEKASGAAPLWTQ 239
>gi|425064871|ref|ZP_18467991.1| DNA polymerase III epsilon subunit [Pasteurella multocida subsp.
gallicida P1059]
gi|404384586|gb|EJZ81019.1| DNA polymerase III epsilon subunit [Pasteurella multocida subsp.
gallicida P1059]
Length = 250
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 152/237 (64%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N +GH IIEIG VE+ NR++TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K F+E+ F++Y+ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNINTDAICMV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GKRNSLDALCDR I RTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 126 TDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSLFD 185
Query: 177 NFKPKINNS---NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I + I++ + ++ N++EL H L ++K S G C+W+K
Sbjct: 186 ENEPEIAVAAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLNKKSKGNCLWEK 242
>gi|423106773|ref|ZP_17094468.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5243]
gi|423112655|ref|ZP_17100346.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5245]
gi|376388899|gb|EHT01591.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5243]
gi|376390149|gb|EHT02835.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5245]
Length = 246
Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 147/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F ++VD FL+Y+ +E++IHNA+FD+GF+D E S L T +
Sbjct: 70 GIADEFLMDKPVFGDVVDEFLDYIRGAELVIHNASFDIGFMDYEFSKLNRGIPKTDTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+ +
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTTMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A ELV H L + K G C+W+
Sbjct: 190 FSMEGEGQRQAGDTGIQRVVRAASKLRVVYATDEELVNHESRLDLVQK-KGGSCLWR 245
>gi|350426028|ref|XP_003494310.1| PREDICTED: hypothetical protein LOC100744914 [Bombus impatiens]
Length = 1100
Score = 210 bits (535), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/232 (46%), Positives = 150/232 (64%), Gaps = 11/232 (4%)
Query: 2 HRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R IVLD ETTG+N+ G H+IIEIG VEI NR++TG + H YINP R ++ A
Sbjct: 10 ERQIVLDTETTGMNMDGGIHYLGHKIIEIGAVEIINRRLTGKHFHVYINPERMVDEEAYK 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY 116
+HG++ + L++K F+E+ + F+ ++ +E++IHNAAFDVGF+D E SL+ +
Sbjct: 70 VHGISNQSLQDKPLFAEVAEKFIQFIDGAELVIHNAAFDVGFIDYEFSLIAHPFKVAEHC 129
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+TDTL MAR++ GKRN+LDALCDRY I HRTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 130 LVTDTLAMARRLFPGKRNNLDALCDRYQIDNSHRTLHGALLDAEILAEVYLAMTGGQTSL 189
Query: 177 NFKPKINNSNNIETKIKI------PNNIPIKLANSNELVQHNMILSKIDKHS 222
+F +T I++ + + I AN EL +H + L I K S
Sbjct: 190 SFSSDDIAHAQQQTAIEVQKLDRQEHKLTIIQANQQELKEHELFLDMIIKKS 241
>gi|422019622|ref|ZP_16366165.1| DNA polymerase III subunit epsilon [Providencia alcalifaciens
Dmel2]
gi|414102728|gb|EKT64318.1| DNA polymerase III subunit epsilon [Providencia alcalifaciens
Dmel2]
Length = 253
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 153/238 (64%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F++I D F+ ++ +E++IHNA FD+GF+D E L T
Sbjct: 67 GISDEFLQDKPVFADIADEFIEFIRGAELVIHNAPFDIGFMDYEFRKLNRGIPPTAEFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L++ARKI GKRN+LDALCDRY I RTLHG LLDAE+L++VYLAMT GQ++L
Sbjct: 127 ITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQTSLA 186
Query: 178 FKPKINNSN----NIETKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F + +SN N +I+ P + + + A+ E+ +H L +DK C+W++
Sbjct: 187 FSMESESSNTEQANTIQRIERPVSGLKVLYASDEEVAEHEARLDIVDKKGGKPCLWRQ 244
>gi|237730199|ref|ZP_04560680.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
gi|365104750|ref|ZP_09334142.1| DNA polymerase III subunit epsilon [Citrobacter freundii
4_7_47CFAA]
gi|226905738|gb|EEH91656.1| DNA polymerase subunit III epsilon [Citrobacter sp. 30_2]
gi|363643691|gb|EHL82995.1| DNA polymerase III subunit epsilon [Citrobacter freundii
4_7_47CFAA]
Length = 245
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 147/236 (62%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D FL+Y+ +E++IHNA+FD+GF+D E + L T +
Sbjct: 70 GIADEFLLDKPTFADVADEFLDYIRGAELVIHNASFDIGFMDYEFAKLKRDIPKTNEFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+ +
Sbjct: 130 ITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTTMA 189
Query: 178 FK----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + N I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FSMEGDSQQQNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQK-KGGSCLWR 244
>gi|212709216|ref|ZP_03317344.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
30120]
gi|212688128|gb|EEB47656.1| hypothetical protein PROVALCAL_00250 [Providencia alcalifaciens DSM
30120]
Length = 253
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 153/238 (64%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F++I D F+ ++ +E++IHNA FD+GF+D E L T
Sbjct: 67 GISDEFLQDKPVFADIADEFIEFIRGAELVIHNAPFDIGFMDYEFRKLNRGIPPTAEFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L++ARKI GKRN+LDALCDRY I RTLHG LLDAE+L++VYLAMT GQ++L
Sbjct: 127 ITDSLVLARKIFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQTSLA 186
Query: 178 FKPKINNSN----NIETKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F + +SN N +I+ P + + + A+ E+ +H L +DK C+W++
Sbjct: 187 FSMESESSNTEQANAIQRIERPVSGLKVLYASDEEVAEHEARLDIVDKKGGKPCLWRQ 244
>gi|410611214|ref|ZP_11322313.1| DNA polymerase III subunit epsilon [Glaciecola psychrophila 170]
gi|410169065|dbj|GAC36202.1| DNA polymerase III subunit epsilon [Glaciecola psychrophila 170]
Length = 235
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 155/235 (65%), Gaps = 8/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL+ GHRIIEIGCVE+ NR++TGN H YINP R E+ A+ +HG+T
Sbjct: 2 RQVVLDTETTGLDPKQGHRIIEIGCVEMINRRLTGNTFHVYINPQRLVEQEAIGVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELS-LLGYS-NFTKYIYRITD 120
++L +K F I + F++++S ++++IHNA FD+GF+D E + L G + + + + D
Sbjct: 62 EYLTDKPVFKSIANEFIDFISGAQLVIHNAPFDIGFMDHEFNRLTGLAVKESAKMCTVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR+IH G++N+LDALC RY I HR HG LLDAE+LA+VYL MT GQ++LN
Sbjct: 122 TLDMARQIHPGQKNNLDALCRRYGIDNSHREKHGALLDAEILADVYLLMTGGQTDLNLSG 181
Query: 181 KINNSN--NIETKIKI-PNNIPIK--LANSNELVQHNMILSKIDKHSNGRCIWKK 230
K + +ET ++ P+K +A ++EL QH + L + G CIW++
Sbjct: 182 KASGEGGLQVETIRRLSAQRKPLKVVMATADELEQHEIRLDLV-AEKGGACIWRE 235
>gi|392556490|ref|ZP_10303627.1| DNA polymerase III subunit epsilon [Pseudoalteromonas undina NCIMB
2128]
Length = 237
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 153/234 (65%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGNN H YINP R E+ A+ +HG+T
Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELMNRRLTGNNFHVYINPQRSIEEEAIDVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL++K + +I F +Y+ +E++IHNA FD+G +D E +LL GY N T + D
Sbjct: 64 EFLRDKPLYRDIAQEFFDYIKGAELVIHNAPFDIGHMDNEFALLNQGYQN-THSFCGVLD 122
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-K 179
TL MAR +H G++N+LDALC RY++ RTLHG LLD+E+LA+VYLAMT GQ LN +
Sbjct: 123 TLKMARDLHPGQKNNLDALCRRYDVDNTKRTLHGALLDSEILADVYLAMTGGQVKLNLNQ 182
Query: 180 PKINNSNNIETKIK--IPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
K ++S + + I+ + P+ + AN E H L + K G C+W+
Sbjct: 183 NKDDSSEDQKGGIRRLSSDRAPLVVIAANDAEQSAHQTRLDIVQKEG-GHCLWR 235
>gi|288937007|ref|YP_003441066.1| DNA polymerase III subunit epsilon [Klebsiella variicola At-22]
gi|288891716|gb|ADC60034.1| DNA polymerase III, epsilon subunit [Klebsiella variicola At-22]
Length = 246
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D F++Y+ +E++IHNA+FD+GF+D E L T+ +
Sbjct: 70 GIADEFLLDKPTFADVADEFMDYIRGAELVIHNASFDIGFMDYEFGKLNRGIGKTETFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 130 ITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTSMA 189
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ ++ + + + A+ ELV H L + K G C+W+
Sbjct: 190 FSMEGESQQQAGEMGIQRVVRAASQLRVVYASDEELVNHESRLDLVQK-KGGSCLWR 245
>gi|15601971|ref|NP_245043.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
multocida str. Pm70]
gi|383310800|ref|YP_005363610.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
multocida str. HN06]
gi|425062788|ref|ZP_18465913.1| DNA polymerase III epsilon subunit [Pasteurella multocida subsp.
gallicida X73]
gi|31563219|sp|Q9CPE0.1|DPO3E_PASMU RecName: Full=DNA polymerase III subunit epsilon
gi|12720318|gb|AAK02190.1| DnaQ [Pasteurella multocida subsp. multocida str. Pm70]
gi|380872072|gb|AFF24439.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
multocida str. HN06]
gi|404383494|gb|EJZ79945.1| DNA polymerase III epsilon subunit [Pasteurella multocida subsp.
gallicida X73]
Length = 253
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 151/237 (63%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N +GH IIEIG VE+ NR++TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPVDPDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K F+E+ F++Y+ +E++IHNA FDVGF+D E L + T I +
Sbjct: 69 GITDEMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNINTDAICMV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GKRNSLDALCDR I RTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 129 TDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I I++ + ++ N++EL H L ++K S G C+W+K
Sbjct: 189 ENEPEIAVVAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLNKKSKGNCLWEK 245
>gi|348029132|ref|YP_004871818.1| DNA polymerase III subunit epsilon [Glaciecola nitratireducens
FR1064]
gi|347946475|gb|AEP29825.1| DNA polymerase III, epsilon subunit [Glaciecola nitratireducens
FR1064]
Length = 233
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 103/232 (44%), Positives = 153/232 (65%), Gaps = 6/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+N +GHRIIEIGCVE+ NR++TGN H YINP RD E+ A+A+HG+T
Sbjct: 2 RQIVLDTETTGINPKEGHRIIEIGCVEMVNRKLTGNTYHVYINPHRDIEEEAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDT 121
+FLK+K F +I F++++ +E++IHNA FD+GF+D E +L + T I + DT
Sbjct: 62 EFLKDKPGFKQIAQEFIDFIKGAELVIHNAPFDIGFMDNEFALNNSAIKKTSEICTVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L +AR++ G++N+LDALC Y + HRT HG LLD+E+LAEVYL MT GQ+ +++ +
Sbjct: 122 LALAREMRPGQKNNLDALCRVYGVDNTHRTYHGALLDSEILAEVYLWMTGGQTAMSWAHE 181
Query: 182 INNSN----NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
S+ N + + + A+++E+ +H L KI+K S +W+
Sbjct: 182 SEGSDPKNKNAPRVVNFEGILKVVKASADEVSKHEAYLDKIEKKSQ-EVVWR 232
>gi|421262820|ref|ZP_15713906.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
multocida str. P52VAC]
gi|401690448|gb|EJS85723.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
multocida str. P52VAC]
Length = 253
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 151/237 (63%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N +GH IIEIG VE+ NR++TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPVDPDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T L +K F+E+ F++Y+ +E++IHNA FDVGF+D E L + T I +
Sbjct: 69 GITDDMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNINTDAICMV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GKRNSLDALCDR I RTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 129 TDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSLFD 188
Query: 177 NFKPKINNS---NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I + I++ + ++ N++EL H L ++K S G C+W+K
Sbjct: 189 ENEPEIAVAAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLNKKSKGNCLWEK 245
>gi|304395367|ref|ZP_07377250.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB]
gi|304356661|gb|EFM21025.1| DNA polymerase III, epsilon subunit [Pantoea sp. aB]
Length = 243
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K FS+I D FL+Y+ +E++IHNA FD+GF+D E S L T+ +
Sbjct: 67 GIADEFLADKPAFSDIADEFLDYIRGAELVIHNAPFDIGFMDYEFSKLNRGIEKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS--- 174
ITD+L +AR++ GKRNSLDALC RY I RTLHG LLDAE+LAEV+L MT GQ+
Sbjct: 127 ITDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAEILAEVFLTMTGGQTSLS 186
Query: 175 --NLNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + +I+ ++ + + + A+ E+V H L + K G C+W+
Sbjct: 187 FLSESESAREAQGESIQRIVRPASALRVVTASEEEVVAHESRLDLVMK-KGGSCLWR 242
>gi|395231458|ref|ZP_10409747.1| DNA polymerase subunit III epsilon [Citrobacter sp. A1]
gi|424731313|ref|ZP_18159898.1| dna polymerase epsilon subunit [Citrobacter sp. L17]
gi|394714761|gb|EJF20657.1| DNA polymerase subunit III epsilon [Citrobacter sp. A1]
gi|422894287|gb|EKU34101.1| dna polymerase epsilon subunit [Citrobacter sp. L17]
Length = 245
Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 147/236 (62%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D FL+Y+ +E++IHNA+FD+GF+D E + L T +
Sbjct: 70 GIADEFLLDKPTFADVADEFLDYIRGAELVIHNASFDIGFMDYEFAKLKRDIPKTNEFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+ +
Sbjct: 130 ITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTTMA 189
Query: 178 FK----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + N I+ ++ + + + A EL H L + K G C+W+
Sbjct: 190 FSMEGDSQQRNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQK-KGGSCLWR 244
>gi|157369157|ref|YP_001477146.1| DNA polymerase III subunit epsilon [Serratia proteamaculans 568]
gi|157320921|gb|ABV40018.1| DNA polymerase III, epsilon subunit [Serratia proteamaculans 568]
Length = 246
Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 152/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG +E+ NR+ TG + H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGALEVINRRPTGRHYHVYIKPDRLVDPEAYGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I D F++++ E++IHNAAFD+GF+D E +L T
Sbjct: 67 GISDEFLADKPTFAQIADEFIDFIRGGELVIHNAAFDIGFMDHEFRMLQQGIPKTDTFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMAR++ GKRN+LDALC RY I RTLHG LLDAE+LAEVYLAMT GQ+++
Sbjct: 127 ITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQTSMA 186
Query: 178 FKPK-----INNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F+ + N++ +I+ ++ + + A+ E+V H L + K G C+W+
Sbjct: 187 FQMEGDTQNSNSTQDIQRIVRPATTMKVVYASDEEVVAHEARLDLVAK-KGGSCLWR 242
>gi|455646772|gb|EMF25799.1| DNA polymerase III subunit epsilon [Citrobacter freundii GTC 09479]
Length = 242
Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 147/236 (62%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D FL+Y+ +E++IHNA+FD+GF+D E + L T +
Sbjct: 67 GIADEFLLDKPTFADVADEFLDYIRGAELVIHNASFDIGFMDYEFAKLKRDIPKTNEFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+ +
Sbjct: 127 ITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTTMA 186
Query: 178 FK----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + N I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FSMEGDSQQRNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQK-KGGSCLWR 241
>gi|378774828|ref|YP_005177071.1| DNA polymerase III subunit epsilon [Pasteurella multocida 36950]
gi|386834792|ref|YP_006240109.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
multocida str. 3480]
gi|356597376|gb|AET16102.1| DNA polymerase III subunit epsilon [Pasteurella multocida 36950]
gi|385201495|gb|AFI46350.1| DNA polymerase III, epsilon subunit [Pasteurella multocida subsp.
multocida str. 3480]
Length = 253
Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 151/237 (63%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N +GH IIEIG VE+ NR++TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPVDPDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K F+E+ F++Y+ +E++IHNA FDVGF+D E L + T I +
Sbjct: 69 GITDEMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNINTDEICMV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GKRNSLDALCDR I RTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 129 TDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I I++ + ++ N++EL H L ++K S G C+W+K
Sbjct: 189 ENEPEIAVVAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLNKKSKGNCLWEK 245
>gi|206577790|ref|YP_002240302.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae 342]
gi|290509928|ref|ZP_06549298.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
gi|206566848|gb|ACI08624.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae 342]
gi|289776644|gb|EFD84642.1| DNA polymerase III, epsilon subunit [Klebsiella sp. 1_1_55]
Length = 243
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D F++Y+ +E++IHNA+FD+GF+D E L T+ +
Sbjct: 67 GIADEFLLDKPTFADVADEFMDYIRGAELVIHNASFDIGFMDYEFGKLNRGIGKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 127 ITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTSMA 186
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ ++ + + + A+ ELV H L + K G C+W+
Sbjct: 187 FSMEGESQQQAGEMGIQRVVRAASQLRVVYASDEELVNHESRLDLVQK-KGGSCLWR 242
>gi|345297984|ref|YP_004827342.1| DNA polymerase III subunit epsilon [Enterobacter asburiae LF7a]
gi|345091921|gb|AEN63557.1| DNA polymerase III, epsilon subunit [Enterobacter asburiae LF7a]
Length = 246
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D FL Y+ +E++IHNA+FD+GF+D E S L T +
Sbjct: 70 GIADEFLLDKPTFADVADEFLEYIRGAELVIHNASFDIGFMDYEFSKLNRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQTSMA 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + LA+ EL+ H L + K G C+W+
Sbjct: 190 FSMENEGQQTLGEAGIQRVVRQASRLRVVLASDEELLNHESRLDLVQK-KGGSCMWR 245
>gi|372276296|ref|ZP_09512332.1| DNA polymerase III subunit epsilon [Pantoea sp. SL1_M5]
gi|390435578|ref|ZP_10224116.1| DNA polymerase III subunit epsilon [Pantoea agglomerans IG1]
Length = 243
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K FSEI D FL+Y+ +E++IHNA FD+GF+D E + L T+ +
Sbjct: 67 GIADEFLADKPAFSEIADEFLDYIRGAELVIHNAPFDIGFMDYEFAKLNRGIEKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS--- 174
ITD+L +AR++ GKRNSLDALC RY I RTLHG LLDAE+LAEV+L MT GQ+
Sbjct: 127 ITDSLALARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILAEVFLTMTGGQTSLS 186
Query: 175 --NLNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + +I+ ++ + + + A+ E+V H L + K G C+W+
Sbjct: 187 FLSESESARQAQGESIQRIVRPTSALRVVTASDEEVVAHESRLDLVMK-KGGSCLWR 242
>gi|419802314|ref|ZP_14327507.1| DNA polymerase III, epsilon subunit [Haemophilus parainfluenzae
HK262]
gi|419844315|ref|ZP_14367607.1| DNA polymerase III, epsilon subunit [Haemophilus parainfluenzae
HK2019]
gi|385190806|gb|EIF38239.1| DNA polymerase III, epsilon subunit [Haemophilus parainfluenzae
HK262]
gi|386417578|gb|EIJ32055.1| DNA polymerase III, epsilon subunit [Haemophilus parainfluenzae
HK2019]
Length = 249
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 147/238 (61%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPDRLVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K F I +F+ Y+ +E++IHNA FDVGF+D E LG T I +
Sbjct: 66 GITDEMLADKPDFKTIAQDFIEYICGAELLIHNAPFDVGFMDYEFRKLGLDIKTTDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GKRNSLDALCDR I RTLHG LLDAE+LA+VYL+MT GQ++L
Sbjct: 126 TDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLSMTGGQTSLFD 185
Query: 177 ------NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ N ++++ + N+ + +EL H + ++K S+G+C W
Sbjct: 186 EEHADSSIIQTTTNVQDLQSAVNFSQNLKVLQPTDDELQAHLDFIKLVNKKSDGKCFW 243
>gi|87119404|ref|ZP_01075302.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Marinomonas sp. MED121]
gi|86165795|gb|EAQ67062.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Marinomonas sp. MED121]
Length = 235
Score = 209 bits (533), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 108/236 (45%), Positives = 152/236 (64%), Gaps = 10/236 (4%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R I+LD ETTG++ GHRIIEIGCVE+ +R++T N+ H YINP R E+ A +HG+
Sbjct: 1 MMRQIILDTETTGIDPKQGHRIIEIGCVEMLDRKLTKNHFHVYINPDRQVEEEAFQVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--IYRI 118
+ +FL +K +F ++ +FLNY+ +E++IHNA FDVGF+D E + LG NF K I +
Sbjct: 61 SDEFLADKPRFHQVAQDFLNYIQGAELVIHNAPFDVGFIDHEFAKLG--NFPKVADICSV 118
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL AR H G++N+LDALC RY I HR LHG LLD+E+LA+VYL MT GQ++L
Sbjct: 119 FDTLAFARSKHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGL 178
Query: 179 KPKINNSNNIETKI---KIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ++ + P+ IK+ AN EL HN L I+K + G+ +W+
Sbjct: 179 GDDEDGADGMSVPTIRRLSPDRPMIKVLKANQAELDLHNERLDLIEKQA-GKVLWR 233
>gi|226945027|ref|YP_002800100.1| DNA polymerase III subunit epsilon [Azotobacter vinelandii DJ]
gi|226719954|gb|ACO79125.1| DNA polymerase III, epsilon subunit [Azotobacter vinelandii DJ]
Length = 244
Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 148/234 (63%), Gaps = 8/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + +GHRIIEIGCVE++ R++TG + H Y+ P R ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTEGHRIIEIGCVELQGRRLTGRHFHVYLQPDRTVDEGAVAVHGITD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
FL +K +F++I + F ++ +++IIHNAAFD+GF++ E S LG + T D
Sbjct: 62 DFLADKPRFADIAEEFFEFIKGAQLIIHNAAFDIGFIEDEFSRLGQTERADVNAHCTVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLLMAR+ H G+RNSLDALC RY++ +R LHG LLDAE+LA+V+LAMT GQ++L+
Sbjct: 122 TLLMARERHPGQRNSLDALCKRYDVDNSNRDLHGALLDAEILADVWLAMTGGQTHLSLSG 181
Query: 181 KINNSNNIETKIKIPNNIPIKL------ANSNELVQHNMILSKIDKHSNGRCIW 228
+ + + I P + A EL H L+ I+K + +W
Sbjct: 182 EGSENGGRAQASAIRRLSPERQRTRVIRAGEQELAAHAERLAAIEKAAGAPPLW 235
>gi|451936675|ref|YP_007460529.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
gi|451777598|gb|AGF48573.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium oncopeltii TCC290E]
Length = 227
Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 109/231 (47%), Positives = 154/231 (66%), Gaps = 10/231 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTG++ + GHR+IEIGCVE+ +R IT N H YINP RD + AL++HGLT
Sbjct: 2 RQIIFDTETTGIDPVKGHRVIEIGCVEVIDRTITDNYFHVYINPDRDIDPGALSVHGLTV 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K +F +V++F+ ++ ++E+I HNA+FDV F++ ELS++G+ + Y +I D+L
Sbjct: 62 DFLSDKPRFKSVVNDFIEFIKDAELIAHNASFDVKFINNELSMVGFESLISYCSKIIDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
ARK+ GKRNSLDALCD YNIS R LHG LLDA+LLA V+L+MTRGQ L N K
Sbjct: 122 DHARKLRPGKRNSLDALCDFYNISNKDRVLHGALLDAKLLANVWLSMTRGQDELIINNKS 181
Query: 181 KI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ NN +N + I N+P+ A E +H+ + ++ K +N IW
Sbjct: 182 NMYLGNNKHNNDFYI----NLPVLKATIKEQKEHDKYIEELRK-NNKNIIW 227
>gi|269140166|ref|YP_003296867.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
gi|387868686|ref|YP_005700155.1| DNA polymerase III subunit epsilon [Edwardsiella tarda FL6-60]
gi|267985827|gb|ACY85656.1| DNA polymerase III subunit epsilon [Edwardsiella tarda EIB202]
gi|304559999|gb|ADM42663.1| DNA polymerase III epsilon subunit [Edwardsiella tarda FL6-60]
Length = 243
Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPDRLVDPEAFTVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ FL +K F+E+ D FL ++ +E++IHNA FD+GF+D E + LG T+
Sbjct: 67 GISDDFLLDKPSFAEVADEFLAFIRGAELVIHNAPFDIGFMDYEFAKLGRDLPKTETFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L+MAR++ GKRNSLDALC+RY I RTLHG LLDA++LA+VYL MT GQ++L
Sbjct: 127 ITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTGGQTSLA 186
Query: 178 FKP-----KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + ++ I ++ + + A+ EL H L + K G C+W+
Sbjct: 187 FSSDGDGTSQSQASEIRRVVRGAKGLRVVYASEAELAAHEQRLDLVQK-KGGSCLWR 242
>gi|421845700|ref|ZP_16278853.1| DNA polymerase III subunit epsilon [Citrobacter freundii ATCC 8090
= MTCC 1658]
gi|411773235|gb|EKS56806.1| DNA polymerase III subunit epsilon [Citrobacter freundii ATCC 8090
= MTCC 1658]
Length = 242
Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 147/236 (62%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D FL+Y+ +E++IHNA+FD+GF+D E + L T +
Sbjct: 67 GIADEFLLDKPTFADVADEFLDYIRGAELVIHNASFDIGFMDYEFAKLRRDIPKTNEFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+ +
Sbjct: 127 ITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTTMA 186
Query: 178 FK----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + N I+ ++ + + + A EL H L + K G C+W+
Sbjct: 187 FSMEGDSQQRNDTGIQRIVRQSSKLRVVFATDEELAAHESRLDLVQK-KGGSCLWR 241
>gi|417840802|ref|ZP_12486910.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M19501]
gi|341950613|gb|EGT77200.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M19501]
Length = 256
Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 155/243 (63%), Gaps = 15/243 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F E+ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTNDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185
Query: 177 ---NFKPKI------NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCI 227
+ +P++ + I++ + +N+ + ++EL H +L I+K S C+
Sbjct: 186 EEESVEPEVIHVVQEKAAEEIKSAVDFAHNLKLLQPTNDELQAHLELLKMINKKSGNNCL 245
Query: 228 WKK 230
W K
Sbjct: 246 WDK 248
>gi|262044050|ref|ZP_06017130.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|330005755|ref|ZP_08305367.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
gi|365144799|ref|ZP_09348873.1| DNA polymerase III subunit epsilon [Klebsiella sp. 4_1_44FAA]
gi|424934955|ref|ZP_18353327.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
gi|425078253|ref|ZP_18481356.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|425079989|ref|ZP_18483086.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|425088886|ref|ZP_18491979.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|425090108|ref|ZP_18493193.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|259038622|gb|EEW39813.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
ATCC 13884]
gi|328536123|gb|EGF62511.1| DNA polymerase III, epsilon subunit [Klebsiella sp. MS 92-3]
gi|363647825|gb|EHL87029.1| DNA polymerase III subunit epsilon [Klebsiella sp. 4_1_44FAA]
gi|405591232|gb|EKB64745.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW1]
gi|405601978|gb|EKB75131.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW3]
gi|405606914|gb|EKB79884.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW2]
gi|405613792|gb|EKB86513.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae WGLW5]
gi|407809142|gb|EKF80393.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae KpQ3]
Length = 246
Score = 209 bits (532), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D F++Y+ +E++IHNA+FD+GF+D E S L T+ +
Sbjct: 70 GIADEFLLDKPTFADVADEFMDYIRGAELVIHNASFDIGFMDYEFSKLNRGIGKTETFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 130 ITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTSMA 189
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 190 FSMEGESQQQAGEMGIQRVVRAGSQLRVVYASDEELANHESRLDLVQK-KGGSCLWR 245
>gi|399910917|ref|ZP_10779231.1| DNA polymerase III subunit epsilon [Halomonas sp. KM-1]
Length = 254
Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 151/239 (63%), Gaps = 14/239 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHR+IEIG +E+ NR+ TG H YINP R+ E A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPREGHRLIEIGALELVNRRFTGRTYHQYINPEREVEAEAIGVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI------Y 116
+FL++K FS + D F +V +E++IHNAAFDVGF+D E +LL + +
Sbjct: 62 EFLEDKPVFSAVADEFWAFVRGAELVIHNAAFDVGFIDHEFNLLLSARGEPRLGPVAEHC 121
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
RI DTL +AR+ H G+RN+LDALC RY I HR LHG LLDAE+LAEVYLAMT GQ+ L
Sbjct: 122 RILDTLKLARERHPGQRNNLDALCKRYEIDNGHRVLHGALLDAEILAEVYLAMTGGQTAL 181
Query: 177 NFKPKINNSNNIET------KIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + ++S++ ++ +P + + + EL H L +I + ++G C W
Sbjct: 182 SLDAEESSSSDAMASGLSIRRLALPAGTLRVVQPGAEELAAHRAKLEQI-RQASGSCHW 239
>gi|152968805|ref|YP_001333914.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|378977116|ref|YP_005225257.1| DNA polymerase III [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|386033286|ref|YP_005953199.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae KCTC
2242]
gi|419975993|ref|ZP_14491397.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|419981716|ref|ZP_14496988.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|419987301|ref|ZP_14502423.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|419993103|ref|ZP_14508050.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|419999095|ref|ZP_14513875.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|420000904|ref|ZP_14515562.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|420010735|ref|ZP_14525204.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|420013466|ref|ZP_14527777.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|420018550|ref|ZP_14532747.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|420027764|ref|ZP_14541753.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|420033749|ref|ZP_14547549.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|420035499|ref|ZP_14549163.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|420041834|ref|ZP_14555330.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|420047897|ref|ZP_14561213.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|420056588|ref|ZP_14569742.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|420062114|ref|ZP_14575093.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|420064726|ref|ZP_14577535.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|420072459|ref|ZP_14585096.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|420079141|ref|ZP_14591591.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|420083019|ref|ZP_14595308.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|421909407|ref|ZP_16339224.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|421918167|ref|ZP_16347700.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|424829086|ref|ZP_18253814.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|428151686|ref|ZP_18999395.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428931277|ref|ZP_19004876.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae JHCK1]
gi|428938858|ref|ZP_19011978.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae VA360]
gi|449046974|ref|ZP_21730663.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae hvKP1]
gi|150953654|gb|ABR75684.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae MGH 78578]
gi|339760414|gb|AEJ96634.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae KCTC
2242]
gi|364516527|gb|AEW59655.1| DNA polymerase III [Klebsiella pneumoniae subsp. pneumoniae
HS11286]
gi|397341771|gb|EJJ34944.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH1]
gi|397342289|gb|EJJ35452.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH2]
gi|397345242|gb|EJJ38368.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH4]
gi|397358897|gb|EJJ51606.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH6]
gi|397359290|gb|EJJ51989.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH5]
gi|397373119|gb|EJJ65591.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH7]
gi|397377938|gb|EJJ70158.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH8]
gi|397380415|gb|EJJ72600.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH9]
gi|397390507|gb|EJJ82417.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH10]
gi|397392901|gb|EJJ84677.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH11]
gi|397394204|gb|EJJ85939.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH12]
gi|397408235|gb|EJJ99611.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH14]
gi|397416737|gb|EJK07910.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH17]
gi|397418371|gb|EJK09530.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH16]
gi|397420384|gb|EJK11461.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH18]
gi|397429095|gb|EJK19819.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH19]
gi|397433432|gb|EJK24082.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH20]
gi|397438978|gb|EJK29443.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH21]
gi|397444096|gb|EJK34387.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH22]
gi|397451665|gb|EJK41746.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae subsp.
pneumoniae KPNIH23]
gi|410116683|emb|CCM81849.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae ST258-K26BO]
gi|410119494|emb|CCM90325.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae ST258-K28BO]
gi|414706503|emb|CCN28207.1| DNA polymerase III, epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae Ecl8]
gi|426304893|gb|EKV67026.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae VA360]
gi|426308304|gb|EKV70371.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae JHCK1]
gi|427538318|emb|CCM95533.1| DNA polymerase III epsilon subunit [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|448877583|gb|EMB12545.1| DNA polymerase III subunit epsilon [Klebsiella pneumoniae hvKP1]
Length = 243
Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D F++Y+ +E++IHNA+FD+GF+D E S L T+ +
Sbjct: 67 GIADEFLLDKPTFADVADEFMDYIRGAELVIHNASFDIGFMDYEFSKLNRGIGKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 127 ITDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTSMA 186
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 187 FSMEGESQQQAGEMGIQRVVRAGSQLRVVYASDEELANHESRLDLVQK-KGGSCLWR 242
>gi|448240631|ref|YP_007404684.1| DNA polymerase III epsilon subunit [Serratia marcescens WW4]
gi|445210995|gb|AGE16665.1| DNA polymerase III epsilon subunit [Serratia marcescens WW4]
gi|453066028|gb|EMF06984.1| DNA polymerase III subunit epsilon [Serratia marcescens VGH107]
Length = 247
Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAYGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ FL +K F ++ + FL+++ E++IHNAAFD+GF+D E +L T+
Sbjct: 67 GISDDFLADKPTFDQVAEEFLDFIRGGELVIHNAAFDIGFMDHEFRMLQQGIPKTETFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMAR++ GKRN+LDALC RY I RTLHG LLDAE+LAEVYLAMT GQ+++
Sbjct: 127 ITDSLLMARRLFPGKRNNLDALCSRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQTSIA 186
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F+ + + N I+ ++ + + A+ E+ H L + K G C+W+
Sbjct: 187 FQMEGDTQQNDAAQEIQRIVRPATAMKVVYASDEEVKAHEARLDLVAK-KGGSCLWR 242
>gi|417853435|ref|ZP_12498823.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
multocida str. Anand1_goat]
gi|338219623|gb|EGP05256.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
multocida str. Anand1_goat]
Length = 253
Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 150/237 (63%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N +GH IIEIG VE+ NR++TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPVDPDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T L +K F+E+ F++Y+ +E++IHNA FDVGF+D E L + T I +
Sbjct: 69 GITDDMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNINTDAICMV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GKRNSLDALCDR I RTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 129 TDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I I++ + ++ N++EL H L ++K S G C+W+K
Sbjct: 189 ENEPEIAVVAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLNKKSKGNCLWEK 245
>gi|417852330|ref|ZP_12497931.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
gi|338217051|gb|EGP02968.1| DNA polymerase III subunit epsilon [Pasteurella multocida subsp.
gallicida str. Anand1_poultry]
Length = 253
Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 150/237 (63%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N +GH IIEIG VE+ NR++TGNN H YI P R + A +H
Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPVDPDASKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K F+E+ F++Y+ +E++IHNA FDVGF+D E L + T I +
Sbjct: 69 GITDEMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNINTDAICMV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GKRNSLDALCDR I RTLHG LLDAELLA+VYL MT GQ++L
Sbjct: 129 TDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAELLADVYLTMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I I++ + ++ N++EL H L ++K S G C+W+K
Sbjct: 189 ENEPEIAVVAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLNKKSKGNCLWEK 245
>gi|390952168|ref|YP_006415927.1| DNA polymerase III subunit epsilon [Thiocystis violascens DSM 198]
gi|390428737|gb|AFL75802.1| DNA polymerase III, epsilon subunit [Thiocystis violascens DSM 198]
Length = 239
Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 145/238 (60%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL+ +GHRIIEIGCVE+ +R++T N+ H Y+ P R+ + A +HG+T
Sbjct: 2 RQVVLDTETTGLDPREGHRIIEIGCVELIDRRLTRNSFHQYLQPDREIDAGAANVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY---RIT 119
FL +K +F+E+ ++FL YV +E+IIHNA FDVGFLD EL + + T I +T
Sbjct: 62 AFLADKPRFAEVAEDFLRYVEGAELIIHNAPFDVGFLDHELRR--WRDGTPSIQDRCEVT 119
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MAR++H G+RN LDALC RY++ HR LHG LLDAE+LA+VYLAMT GQ +
Sbjct: 120 DTLAMARRLHPGQRNGLDALCKRYSVDNSHRDLHGALLDAEILADVYLAMTGGQVAFHLG 179
Query: 180 PKINNSNNIETKIKIPNNIP-------IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+++ + + + I + A+ H L I S C+W K
Sbjct: 180 GDASDAGGRDPRTRHRGRIDPGRARLCVVRADETSCAAHAARLEAIQSASADGCLWLK 237
>gi|146307095|ref|YP_001187560.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina ymp]
gi|421501802|ref|ZP_15948759.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina DLHK]
gi|145575296|gb|ABP84828.1| DNA polymerase III, epsilon subunit [Pseudomonas mendocina ymp]
gi|400347545|gb|EJO95898.1| DNA polymerase III subunit epsilon [Pseudomonas mendocina DLHK]
Length = 252
Score = 209 bits (532), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 102/241 (42%), Positives = 160/241 (66%), Gaps = 12/241 (4%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
++R++VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+NP R+ ++ A+A+HG+
Sbjct: 7 VNRYVVLDTETTGMPVTDGHRIIEIGCVELLGRRLTGRHFHVYLNPDREIDEGAIAVHGI 66
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS---NFTKYIYR 117
T +++ +K +F ++ D F ++ +++IIHNAAFDVGF++ E +LLG S + + Y
Sbjct: 67 TNEYVADKPRFRDVADEFYEFIKGAQLIIHNAAFDVGFINNEFALLGQSERADVSDYC-S 125
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+ DTL+MAR+ H G+RNSLDALC RY + +R LHG LLD+E+LA+VYLAMT GQ++L+
Sbjct: 126 VLDTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLAMTGGQTHLS 185
Query: 178 FKPKINNSNNIETKIKIP--------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ +S+ + P + A+ +EL H L+ I+K + G +W
Sbjct: 186 LAGEGADSDGSGRQQATPIRRLDAARPRTRVIRASEDELAAHLARLAAIEKSAGGPSLWA 245
Query: 230 K 230
+
Sbjct: 246 Q 246
>gi|325578763|ref|ZP_08148810.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
parainfluenzae ATCC 33392]
gi|325159587|gb|EGC71719.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
parainfluenzae ATCC 33392]
Length = 253
Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 149/238 (62%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPDRLVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K F I +F+ Y+ +E++IHNA FDVGF+D E LG T I +
Sbjct: 66 GITDEMLADKPDFKTIAQDFIEYIRGAELLIHNAPFDVGFMDYEFRKLGLDIKTTDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRNSLDALCDR I RTLHG LLDAE+LA+VYL+MT GQ++L
Sbjct: 126 TDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLSMTGGQTSLFD 185
Query: 179 KPKINNS--------NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ ++S ++++ + N+ + +EL H + ++K S+G+C W
Sbjct: 186 EEHADSSIIQTTANVQDLQSAVNFSQNLKVLQPTDDELQAHLDFIKLVNKKSDGKCFW 243
>gi|431927204|ref|YP_007240238.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri RCH2]
gi|431825491|gb|AGA86608.1| DNA polymerase III, epsilon subunit [Pseudomonas stutzeri RCH2]
Length = 241
Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 147/235 (62%), Gaps = 9/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVADGHRIIEIGCVEVIGRRLTGRHYHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY--RITD 120
+FL +K +F ++ D F ++ ++++IHNAAFD+GF++ E +LLG + D
Sbjct: 62 EFLVDKPRFRDVADEFFEFIKGAQLVIHNAAFDLGFINNEFALLGQQERADIAEHCSVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLLMAR+ H G+RNSLDALC RY + R LHG LLDAE+LA+V+L MT GQ+NL+
Sbjct: 122 TLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNLSLAG 181
Query: 181 KINNSNNIETKIKIPNNIP-------IKLANSNELVQHNMILSKIDKHSNGRCIW 228
+S+ + +P + A+ EL H ++ I+K + +W
Sbjct: 182 DGESSDGGRQQPTPIRRLPADRLRTRVLRASEEELAAHVARMAAIEKAAGATPLW 236
>gi|402843894|ref|ZP_10892275.1| DNA polymerase III, epsilon subunit [Klebsiella sp. OBRC7]
gi|423101404|ref|ZP_17089106.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5242]
gi|376391192|gb|EHT03871.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5242]
gi|402275936|gb|EJU25069.1| DNA polymerase III, epsilon subunit [Klebsiella sp. OBRC7]
Length = 246
Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F ++VD FL+Y+ +E++IHNA+FD+GF+D E + L T +
Sbjct: 70 GIADEFLMDKPAFGDVVDEFLDYIRGAELVIHNASFDIGFMDYEFAKLNRGIPKTDTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+ +
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTTMA 189
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL+ H L + K G C+W+
Sbjct: 190 FSMEGEGQQQAGEMGIQRVVRAASKLRVVYASDEELMNHESRLDLVQK-KGGSCLWR 245
>gi|375259128|ref|YP_005018298.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca KCTC 1686]
gi|397656099|ref|YP_006496801.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca E718]
gi|365908606|gb|AEX04059.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca KCTC 1686]
gi|394344727|gb|AFN30848.1| DNA polymerase III epsilon subunit [Klebsiella oxytoca E718]
Length = 243
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F ++VD FL+Y+ +E++IHNA+FD+GF+D E + L T +
Sbjct: 67 GIADEFLMDKPAFGDVVDEFLDYIRGAELVIHNASFDIGFMDYEFAKLNRGIPKTDTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+ +
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTTMA 186
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL+ H L + K G C+W+
Sbjct: 187 FSMEGEGQQQAGEIGIQRVVRAASKLRVVYASDEELMNHESRLDLVQK-KGGSCLWR 242
>gi|440288991|ref|YP_007341756.1| DNA polymerase III, epsilon subunit [Enterobacteriaceae bacterium
strain FGI 57]
gi|440048513|gb|AGB79571.1| DNA polymerase III, epsilon subunit [Enterobacteriaceae bacterium
strain FGI 57]
Length = 246
Score = 209 bits (531), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 147/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H+Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHFYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F EI D F++Y+ +E++IHNA+FD+GF+D E L T +
Sbjct: 70 GIADEFLLDKPTFGEIADEFMDYIRGAELVIHNASFDIGFMDYEFGKLNRGIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+ +
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLLMTGGQTTMA 189
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ ELV H L + K G C+W+
Sbjct: 190 FSMEGEGQQQQTDVGIQRVNRVGSKLRVVFASDEELVAHESRLDLVQK-KGGSCLWR 245
>gi|381405571|ref|ZP_09930255.1| DNA polymerase III subunit epsilon [Pantoea sp. Sc1]
gi|380738770|gb|EIB99833.1| DNA polymerase III subunit epsilon [Pantoea sp. Sc1]
Length = 243
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K FSEI D FL+Y+ +E++IHNA FD+GF+D E S L T+ +
Sbjct: 67 GIADEFLADKPMFSEIADEFLDYIRGAELVIHNAPFDIGFMDYEFSKLNRGIEKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS--- 174
+TD+L +AR++ GKRNSLDALC RY I RTLHG LLDAE+LA+V+L MT GQ+
Sbjct: 127 VTDSLALARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAEILADVFLTMTGGQTSLS 186
Query: 175 --NLNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + +I+ ++ + + + A+ E+V H L + K G C+W+
Sbjct: 187 FLSESESARQAQGESIQRIVRPASALRVVTASDEEIVAHESRLDLVMK-KGGSCLWR 242
>gi|350553065|ref|ZP_08922251.1| DNA polymerase III, epsilon subunit [Thiorhodospira sibirica ATCC
700588]
gi|349791916|gb|EGZ45786.1| DNA polymerase III, epsilon subunit [Thiorhodospira sibirica ATCC
700588]
Length = 240
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 149/236 (63%), Gaps = 7/236 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R I+LD ETTGL GHRIIEIG VE+ R++TG + H+Y+ P R+ ++ A A+HG+
Sbjct: 1 MQRQIILDTETTGLEPAQGHRIIEIGAVELIERRLTGQHFHHYLQPDREIDEEARAVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELS-LLGYSNFTKYIYRIT 119
+ +FL +K +F++I D FL +VS +E+IIHNA FDVGF+D EL+ L + IT
Sbjct: 61 SNEFLADKPRFAQIADEFLAFVSGAELIIHNAPFDVGFIDAELARLTPHPGKLGSRCHIT 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR++H G R SLDALC RY + +R LHG LLDA +LAEVYLAMT GQ L
Sbjct: 121 DTLVMARRLHPGSRVSLDALCKRYGVDNTNRELHGALLDARILAEVYLAMTGGQVTLLLA 180
Query: 180 PKINNSNNIET-----KIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++S+ +T ++ P ++ I A++ E H L ++ K S C W
Sbjct: 181 SAQDSSSAADTAPQQRRLTDPRPSLKIVRASAAEQHAHAQFLQQLRKSSGSPCPWP 236
>gi|146310412|ref|YP_001175486.1| DNA polymerase III subunit epsilon [Enterobacter sp. 638]
gi|145317288|gb|ABP59435.1| DNA polymerase III, epsilon subunit [Enterobacter sp. 638]
Length = 245
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 153/236 (64%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGRNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D F+ Y++ +E++IHNA+FD+GF+D E S L + T +
Sbjct: 70 GIADEFLLDKPTFADVADEFIEYINGAELVIHNASFDIGFMDYEFSKLNRNIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK++ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 130 VTDSLALARKMYPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLLMTGGQTSMA 189
Query: 178 FKPKINNSNN----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + ++ I+ ++ + + + LA+ EL +H L + K G C+W+
Sbjct: 190 FSTESDSQQQANGGIQRVVRQDSRLRVILASEEELAEHESRLDIVQK-KGGSCLWR 244
>gi|332288192|ref|YP_004419044.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179]
gi|330431088|gb|AEC16147.1| DNA polymerase III subunit epsilon [Gallibacterium anatis UMN179]
Length = 248
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 151/238 (63%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG++ GHRIIEIG VE+ NR+ TG N H Y+ P + + A+A+H
Sbjct: 7 RIVVLDTETTGMSGTSEPQIGHRIIEIGAVELVNRRYTGRNFHVYLQPDQQVDPEAVAVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T +FL +K +F E+ F+N++ +E++IHNA FDV F++ E +L G + T + ++
Sbjct: 67 GITDEFLADKPRFKEVAQEFINFIKGAELVIHNAPFDVAFMNQEFALQGQALTTDQLCKV 126
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TD+L +AR+++ GK+NSLDALC R I RTLHG LLDAE+LA+VYLAMT GQ +L
Sbjct: 127 TDSLKVARQLYPGKKNSLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTGGQGSLQL 186
Query: 179 --KPKINNSNNIETKIKIPNNIPIKL----ANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P + + +N P KL ++ E+ H LS I+K S +C+W++
Sbjct: 187 DTEPAVAVQQQEVQQQIQHSNTPRKLFVLKPSAEEIQAHQEYLSLINKKSGDQCLWQQ 244
>gi|332306364|ref|YP_004434215.1| DNA polymerase III subunit epsilon [Glaciecola sp. 4H-3-7+YE-5]
gi|332173693|gb|AEE22947.1| DNA polymerase III, epsilon subunit [Glaciecola sp. 4H-3-7+YE-5]
Length = 235
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 155/237 (65%), Gaps = 12/237 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGN H YINP R E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPRQGHRIIEIGCVELVNRRLTGNTFHVYINPQRLIEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMEL----SLLGYSNFTKYIYRI 118
++L +K F++I +F +++ ++++IHNA FDVGF+D E S++G T + +
Sbjct: 62 EYLLDKPVFADIAADFAQFINGAQLVIHNAPFDVGFMDHEFDRVASMVGKK--TADMCTV 119
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL MAR+IH G++N+LDALC RY I HR LHG LLD+E+LA+VYL MT GQ+ LN
Sbjct: 120 LDTLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTALNL 179
Query: 179 KPKINN--SNNIETKIKIP---NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K N+ + +E ++ N + + A ++EL +H L + K G C+W++
Sbjct: 180 SGKSNSDGGSQVEPIRRLDPSLNQLKVLRATADELAEHEKRLDLVTKEG-GSCLWRE 235
>gi|359439097|ref|ZP_09229077.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20311]
gi|359445472|ref|ZP_09235207.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20439]
gi|358026331|dbj|GAA65326.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20311]
gi|358040693|dbj|GAA71456.1| DNA polymerase III subunit epsilon [Pseudoalteromonas sp. BSi20439]
Length = 237
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 153/234 (65%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGNN H YINP R E+ A+ +HG+T
Sbjct: 4 RQIVLDTETTGIDPKQGHRIIEIGCVELMNRRLTGNNFHVYINPQRSIEEEAIDVHGITN 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL++K + +I F +Y+ +E++IHNA FD+G +D E +LL GY N T + D
Sbjct: 64 EFLRDKPLYRDIAQEFFDYIKGAELVIHNAPFDIGHMDNEFALLNQGYQN-THSFCGVLD 122
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-K 179
TL MAR +H G++N+LDALC RY++ RTLHG LLD+E+LA+VYLAMT GQ LN +
Sbjct: 123 TLKMARDLHPGQKNNLDALCRRYDVDNTKRTLHGALLDSEILADVYLAMTGGQVKLNLNQ 182
Query: 180 PKINNSNNIETKIK--IPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
K ++S + + I+ + P+ + A+ E H L + K G C+W+
Sbjct: 183 NKDDSSEDQKGGIRRLSSDRAPLVVIAASDAEQSAHQTRLDIVQKEG-GHCLWR 235
>gi|398844559|ref|ZP_10601620.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM84]
gi|398254435|gb|EJN39531.1| DNA polymerase III, epsilon subunit [Pseudomonas sp. GM84]
Length = 251
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 153/236 (64%), Gaps = 9/236 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ + +GHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 8 RLVILDTETTGMPVSEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITD 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
FL K +F+E+ + F ++ + ++IHNAAFDVGF++ E +LLG + T D
Sbjct: 68 AFLVGKPRFAEVAEEFFEFIQGATLVIHNAAFDVGFINNEFALLGQGDRADISQHCTILD 127
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLL+AR H G+RNSLDALC RY+I R LHG LLD+ELLA+VYLAMT GQ++L+
Sbjct: 128 TLLLARARHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLAG 187
Query: 181 KINNSNN----IETKI-KIPNNIP--IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ ++ ++I +I P + +A++ EL H L+ I K + G +W+
Sbjct: 188 HGADGDSEGQGSGSEIRRITGRAPGRVIVASAEELEAHAERLAAIAKSAGGPSMWQ 243
>gi|302878569|ref|YP_003847133.1| DNA polymerase III subunit epsilon [Gallionella capsiferriformans
ES-2]
gi|302581358|gb|ADL55369.1| DNA polymerase III, epsilon subunit [Gallionella capsiferriformans
ES-2]
Length = 233
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 141/231 (61%), Gaps = 7/231 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ GHRIIEI + ++ R+++ + H+Y++P R+ ++ A +HG T
Sbjct: 2 RKIVLDTETTGLDPKKGHRIIEIAAIALEGRKVSKRHFHHYLDPEREVDEDAARVHGFTW 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
LK + KF++I +FL +V +E++ HNA FD+ F++ EL LLG + DTL
Sbjct: 62 DMLKGRAKFADIATSFLEFVDGAELMAHNAPFDMSFINNELRLLGLPPLENP---VVDTL 118
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---NFK 179
MAR++H GK+N LDALC RY I HRTLHG LLD ELLAEVY AMTRGQ +L +
Sbjct: 119 KMAREMHPGKKNGLDALCSRYEIDNTHRTLHGALLDTELLAEVYFAMTRGQESLLGEDEP 178
Query: 180 PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
P + T P + + L + +EL H L IDK S G C+W K
Sbjct: 179 PAAREIAVLSTDASRP-TVRVLLPSPDELAVHAQQLLDIDKASKGACLWTK 228
>gi|423118797|ref|ZP_17106481.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5246]
gi|376400541|gb|EHT13153.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5246]
Length = 246
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 150/238 (63%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G+ +FL +K F+++ D F++Y+ +E++IHNA+FD+GF+D E S L G + T
Sbjct: 70 GIADEFLMDKPVFADVADEFIDYIRGAELVIHNASFDIGFMDYEFSKLNRGIAK-TNTFC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+ +
Sbjct: 129 KVTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTTM 188
Query: 177 NFKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A +E+V H L + K G C+W+
Sbjct: 189 AFSMEGEGQQQAGEMGIQRVVRAASKLRVVYATDDEIVSHESRLDLVQK-KGGSCLWR 245
>gi|387890429|ref|YP_006320727.1| DNA polymerase III [Escherichia blattae DSM 4481]
gi|414595503|ref|ZP_11445123.1| DNA polymerase III subunit epsilon [Escherichia blattae NBRC
105725]
gi|386925262|gb|AFJ48216.1| DNA polymerase III [Escherichia blattae DSM 4481]
gi|403193587|dbj|GAB82775.1| DNA polymerase III subunit epsilon [Escherichia blattae NBRC
105725]
Length = 243
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 152/238 (63%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNYHVYLKPDRLVDPEAFNVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+ + D F++Y+ +E++IHNA+FD+GF+D E S LG + T +
Sbjct: 67 GIADEFLLDKPDFAAVADGFIDYIRGAELVIHNASFDIGFMDYEFSKLGRNLPKTDTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +AR++ GKRNSLDALC RY I RTLHG LLDA++LA+VYLAMT GQ++L
Sbjct: 127 ITDSLALARRMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLAMTGGQTSLK 186
Query: 178 FKPKINNSNNIETKIKI------PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + N +++ I ++ + +A+ EL H L + K G C+W+
Sbjct: 187 FASE-NEGQQRQSEGAIQRIHRRAGSLRVVMASDEELNAHEQRLDLVQK-KGGSCMWR 242
>gi|417842997|ref|ZP_12489074.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21127]
gi|341950231|gb|EGT76820.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21127]
Length = 256
Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 153/244 (62%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L++K +F E+ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLEDKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTTDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
K + I++ + NN+ + ++EL H +L I+K S C
Sbjct: 185 DEEESVESEVIHVVKEKAAEEIKSAVDFSNNLKLLQPTNDELQAHLELLKMINKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|270263405|ref|ZP_06191674.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13]
gi|421781806|ref|ZP_16218268.1| DNA polymerase III, epsilon subunit [Serratia plymuthica A30]
gi|270042289|gb|EFA15384.1| DNA polymerase III subunit epsilon [Serratia odorifera 4Rx13]
gi|407756036|gb|EKF66157.1| DNA polymerase III, epsilon subunit [Serratia plymuthica A30]
Length = 246
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 152/238 (63%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG + H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPDRLVDPEAYGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G++ +FL +K F +I D F++++ E++IHNA+FD+GF+D E +L G T
Sbjct: 67 GISDEFLADKPTFDQIADEFIDFIRGGELVIHNASFDIGFMDHEFRMLQKGLPK-TDTFC 125
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
ITD+LLMAR++ GKRN+LDALC RY I RTLHG LLDAE+LAEVYLAMT GQ+++
Sbjct: 126 TITDSLLMARRLFPGKRNNLDALCGRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQTSM 185
Query: 177 NFKPKINNSNNIETK-----IKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F+ + + +N T+ ++ + + A+ E+V H L + K G C+W+
Sbjct: 186 AFQMEGDTQHNDSTQDIQRIVRPATAMKVVYASDAEVVAHEARLDLVAK-KGGSCLWR 242
>gi|120554453|ref|YP_958804.1| DNA polymerase III subunit epsilon [Marinobacter aquaeolei VT8]
gi|120324302|gb|ABM18617.1| DNA polymerase III, epsilon subunit [Marinobacter aquaeolei VT8]
Length = 236
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 146/231 (63%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHRIIEIGCVE+ R++TG N H YINP R+ E A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPNEGHRIIEIGCVEVIERELTGRNYHVYINPEREVEAEAITVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+ D F ++ +E++IHNAAFDVGF+D E + L T I D+L
Sbjct: 62 EFLADKPKFAEVADEFFEFIKGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGIVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ARK H G++N+LDALC RY + +R LHG LLDAE+LA+VYL MT GQ+ L+
Sbjct: 122 AIARKKHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLMTGGQTALSLDAGS 181
Query: 183 NNSNNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ +I + + A S+E H+ ++ ++K + G +W +
Sbjct: 182 GDEGGDGGIRRISGERAPLAVVRATSDEASAHDEFMAMMEKQA-GETVWSR 231
>gi|440739785|ref|ZP_20919290.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens
BRIP34879]
gi|447916382|ref|YP_007396950.1| DNA polymerase III subunit epsilon [Pseudomonas poae RE*1-1-14]
gi|440378986|gb|ELQ15593.1| DNA polymerase III subunit epsilon [Pseudomonas fluorescens
BRIP34879]
gi|445200245|gb|AGE25454.1| DNA polymerase III subunit epsilon [Pseudomonas poae RE*1-1-14]
Length = 248
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 160/242 (66%), Gaps = 15/242 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 4 RSVVLDTETTGMPVTDGHRIIEIGCVELMGRRLTGRHFHVYLQPDRESDEGAIGVHGITD 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR---IT 119
+FLK K +F+E+ D F +++ +++IIHNAAFD+GF++ E +L+G ++ I R I
Sbjct: 64 EFLKGKPRFAEVADEFFEFINGAQLIIHNAAFDIGFINNEFALMGQTDRAD-ISRHCSIL 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL+MAR+ H G+RNSLDALC RY + +R LHG LLD+E+LA+VYL MT GQ++L+
Sbjct: 123 DTLMMARERHPGQRNSLDALCKRYGVDNSNRELHGALLDSEILADVYLTMTGGQTSLSLA 182
Query: 180 PKINN-------SNNIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
++ S N ++I ++P + P + A+ +L +H L I K + +W
Sbjct: 183 GNASDGSGSAEGSGNRPSEIRRLPADRTPTAIIRASEQDLAEHVARLEAIAKAAGAPALW 242
Query: 229 KK 230
+
Sbjct: 243 TQ 244
>gi|167949084|ref|ZP_02536158.1| DNA polymerase III, epsilon subunit [Endoriftia persephone
'Hot96_1+Hot96_2']
Length = 203
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 132/178 (74%), Gaps = 1/178 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRIIEIGCVE+ +R+++GNN H Y+ P R+ + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEPQQGHRIIEIGCVEMIDRRLSGNNFHQYLQPDREIDAGAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY-SNFTKYIYRITDT 121
+FL +K +F+++ +FL+Y+ +E+IIHNA FDVGFL+ EL L+G S + + DT
Sbjct: 62 EFLADKPRFADLAADFLDYIRGAELIIHNAPFDVGFLNHELQLMGADSPPIGELCAVIDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
L+MA+K+H G+RNSLDALC RY++ R LHG LLDAE+LA+VYLAMT GQ+ L+ +
Sbjct: 122 LVMAKKMHPGQRNSLDALCKRYDVDNTQRELHGALLDAEILADVYLAMTGGQATLSLE 179
>gi|437733986|ref|ZP_20832138.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
gi|435286911|gb|ELO64146.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 648901 16-16]
Length = 250
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 103/231 (44%), Positives = 146/231 (63%), Gaps = 10/231 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 67 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSN 223
F + I+ ++ + + + A+ EL H L + K +
Sbjct: 187 FAMEGETQRQQGEATIQRIVRQASRLRVVFASEEELAAHESRLDLVQKRAE 237
>gi|425067022|ref|ZP_18470138.1| DNA polymerase III subunit epsilon [Proteus mirabilis WGLW6]
gi|425073540|ref|ZP_18476646.1| DNA polymerase III subunit epsilon [Proteus mirabilis WGLW4]
gi|404595225|gb|EKA95776.1| DNA polymerase III subunit epsilon [Proteus mirabilis WGLW4]
gi|404601693|gb|EKB02085.1| DNA polymerase III subunit epsilon [Proteus mirabilis WGLW6]
Length = 252
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 151/238 (63%), Gaps = 11/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPERLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++ F+EI D FL Y+ +E+IIHNA+FD+GF+D E L T+ +
Sbjct: 67 GISDEFLEDCPSFAEIADEFLAYIRGAELIIHNASFDIGFMDYEFQKLNRDIPLTETFCQ 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MAR++ GKRN+LDALCDRY I RTLHG LLDAE+LA+VYLAMT GQ+ L
Sbjct: 127 ITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTGGQTALA 186
Query: 178 FKPKINNS-----NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F + S ++I+ ++ + + A++ ELV H L + K G C+W+
Sbjct: 187 FSMEGEPSEEQKGDDIQRIVRPVRGLRVIKASAEELVAHEARLDLVVK-KGGHCLWRP 243
>gi|288549963|ref|ZP_05968783.2| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
35316]
gi|288316782|gb|EFC55720.1| DNA polymerase III, epsilon subunit [Enterobacter cancerogenus ATCC
35316]
Length = 246
Score = 208 bits (529), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D FL Y+ +E++IHNA+FD+GF+D E S L T +
Sbjct: 70 GIADEFLLDKPTFADVADEFLEYIKGAELVIHNASFDIGFMDYEFSKLNRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +AR++ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 130 VTDSLALARRMFPGKRNSLDALCSRYEIDNTKRTLHGALLDAQILADVYLTMTGGQTSMK 189
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL++H L + K G C+W+
Sbjct: 190 FSMENESQQSQGEAGIQRLVRQASRLRVVHASDEELLKHESRLDLVQK-KGGSCMWR 245
>gi|397663811|ref|YP_006505349.1| DNA polymerase III subunit epsilon [Legionella pneumophila subsp.
pneumophila]
gi|395127222|emb|CCD05412.1| DNA polymerase III epsilon subunit [Legionella pneumophila subsp.
pneumophila]
Length = 233
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 151/225 (67%), Gaps = 4/225 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ GHR+IEIGC+E+ +R++TG + H Y+NP R+ ++ A +HG++T
Sbjct: 2 RQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGIST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F +IV F+ +V SE+IIHNA FDVGFL+ EL + ++ + RI DTL
Sbjct: 62 EFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEEYCRILDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
++AR+ H G+RNSLDALC RY I +R LHG LLDAE+LA VYLAMT GQS+L +
Sbjct: 122 ILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVES 181
Query: 181 KINNSNNIETKIK-IPNNIPIKL-ANSNELVQHNMILSKIDKHSN 223
+++S +IK + P+ + AN EL+QH + I K S
Sbjct: 182 SLSHSKIKTQEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKSG 226
>gi|167034708|ref|YP_001669939.1| DNA polymerase III subunit epsilon [Pseudomonas putida GB-1]
gi|166861196|gb|ABY99603.1| DNA polymerase III, epsilon subunit [Pseudomonas putida GB-1]
Length = 252
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 99/237 (41%), Positives = 150/237 (63%), Gaps = 10/237 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ + +GHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 8 RFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITD 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
FL K +F ++ + F ++ + ++IHNAAFDVGF++ E +L+G + T D
Sbjct: 68 AFLVGKPRFGDVAEEFFEFIQGATLVIHNAAFDVGFINNEFALIGQQDRADVSQHCTILD 127
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLL+AR H G+RNSLDALC RY+I R LHG LLD+ELLA+VYLAMT GQ++L+
Sbjct: 128 TLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLAG 187
Query: 181 KINNSNNIETKI------KIPNNIP--IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ ++ +I P + +A++ EL H L+ I K + G +W+
Sbjct: 188 HGADAEGEGSEAGGSEIRRITGRTPGRVIMASAEELEAHAERLAAIAKSAGGPSMWQ 244
>gi|336248853|ref|YP_004592563.1| DNA polymerase III subunit epsilon [Enterobacter aerogenes KCTC
2190]
gi|444353004|ref|YP_007389148.1| DNA polymerase III epsilon subunit (EC 2.7.7.7) [Enterobacter
aerogenes EA1509E]
gi|334734909|gb|AEG97284.1| DNA polymerase III subunit epsilon [Enterobacter aerogenes KCTC
2190]
gi|443903834|emb|CCG31608.1| DNA polymerase III epsilon subunit (EC 2.7.7.7) [Enterobacter
aerogenes EA1509E]
Length = 243
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++ D F+ Y+ +E++IHNA+FD+GF+D E L T+ +
Sbjct: 67 GIADEFLMDKPTFADVADEFMEYIRGAELVIHNASFDIGFMDYEFKKLNRGIEKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTSMA 186
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ +EL H L + K G C+W+
Sbjct: 187 FSMEGEGQQQAGDIGIQRVVRAASKLRVVYASDSELADHESRLDLVQK-KGGSCLWR 242
>gi|421725224|ref|ZP_16164422.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca M5al]
gi|410374011|gb|EKP28694.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca M5al]
Length = 243
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F ++VD F++Y+ +E++IHNA+FD+GF+D E + L T +
Sbjct: 67 GIADEFLMDKPAFGDVVDEFIDYIRGAELVIHNASFDIGFMDYEFAKLNRGIPKTDTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+ +
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTTMA 186
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL+ H L + K G C+W+
Sbjct: 187 FSMEGEGQQQAGEMGIQRVVRAASKLRVVYASDEELMNHESRLDLVQK-KGGSCLWR 242
>gi|423127528|ref|ZP_17115207.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5250]
gi|376394567|gb|EHT07217.1| DNA polymerase III subunit epsilon [Klebsiella oxytoca 10-5250]
Length = 246
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F ++VD F++Y+ +E++IHNA+FD+GF+D E + L T +
Sbjct: 70 GIADEFLMDKPAFGDVVDEFIDYIRGAELVIHNASFDIGFMDYEFAKLNRGIPKTDTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ+ +
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTTMA 189
Query: 178 FKPKINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL+ H L + K G C+W+
Sbjct: 190 FSMEGEGQQQAGEMGIQRVVRAASKLRVVYASDEELMNHESRLDLVQK-KGGSCLWR 245
>gi|333925718|ref|YP_004499297.1| DNA polymerase III subunit epsilon [Serratia sp. AS12]
gi|333930671|ref|YP_004504249.1| DNA polymerase III subunit epsilon [Serratia plymuthica AS9]
gi|386327542|ref|YP_006023712.1| DNA polymerase III subunit epsilon [Serratia sp. AS13]
gi|386826045|ref|ZP_10113159.1| DNA polymerase III subunit epsilon [Serratia plymuthica PRI-2C]
gi|333472278|gb|AEF43988.1| DNA polymerase III, epsilon subunit [Serratia plymuthica AS9]
gi|333489778|gb|AEF48940.1| DNA polymerase III, epsilon subunit [Serratia sp. AS12]
gi|333959875|gb|AEG26648.1| DNA polymerase III, epsilon subunit [Serratia sp. AS13]
gi|386377059|gb|EIJ17882.1| DNA polymerase III subunit epsilon [Serratia plymuthica PRI-2C]
Length = 246
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 105/238 (44%), Positives = 151/238 (63%), Gaps = 13/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG + H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYVKPDRLVDPEAYGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G++ +FL +K F +I D F+ ++ E++IHNA+FD+GF+D E +L G T
Sbjct: 67 GISDEFLADKPTFDQIADEFIEFIRGGELVIHNASFDIGFMDHEFRMLQKGLPK-TDTFC 125
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
ITD+LLMAR++ GKRN+LDALC RY I RTLHG LLDAE+LAEVYLAMT GQ+++
Sbjct: 126 TITDSLLMARRLFPGKRNNLDALCGRYEIDNSKRTLHGALLDAEILAEVYLAMTGGQTSM 185
Query: 177 NFKPKINNSNNIETK-----IKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F+ + + +N T+ ++ + + A+ E+V H L + K G C+W+
Sbjct: 186 AFQMEGDTQHNDSTQDIQRIVRPATAMKVVYASDAEVVAHEARLDLVAK-KGGSCLWR 242
>gi|359782741|ref|ZP_09285960.1| DNA polymerase III subunit epsilon [Pseudomonas psychrotolerans
L19]
gi|359369193|gb|EHK69765.1| DNA polymerase III subunit epsilon [Pseudomonas psychrotolerans
L19]
Length = 244
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 152/237 (64%), Gaps = 12/237 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R++VLD ETTG+ + DGHRIIEIG VE+ R++TG + H Y+NP R ++ A+A+HG+T
Sbjct: 2 RYVVLDTETTGMPVTDGHRIIEIGGVEVIGRRLTGRHFHVYLNPDRQIDEGAIAVHGITD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY----SNFTKYIYRI 118
+++ +K +F+EI D+F ++ +E++IHNA FDVGF++ME + LG ++ T++ +
Sbjct: 62 EYVADKPRFAEIADSFFEFIEGAELVIHNAPFDVGFINMEFARLGAHPERADITQHC-SV 120
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL+MAR H G+RNSLDALC RY + +R LHG LLDAE+LA+VYLAMT GQ++L+
Sbjct: 121 LDTLVMARGRHPGQRNSLDALCKRYGVDNSNRELHGALLDAEILADVYLAMTGGQTSLSL 180
Query: 179 KPKINNSNNIETKIKIPNNIP-------IKLANSNELVQHNMILSKIDKHSNGRCIW 228
N + +P + A+S +L H ++ I+K +W
Sbjct: 181 AAHGQEGNGDGNYVMPIRRLPADRQRTRVISASSADLDAHAARMAAIEKSCGRTPLW 237
>gi|227357997|ref|ZP_03842339.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
gi|227161732|gb|EEI46764.1| DNA polymerase III, epsilon subunit [Proteus mirabilis ATCC 29906]
Length = 252
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/238 (45%), Positives = 152/238 (63%), Gaps = 11/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPERLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++ F+EI D FL Y+ +E+IIHNA+FD+GF+D E L T+ +
Sbjct: 67 GISDEFLEDCPSFAEIADEFLAYIRGAELIIHNASFDIGFMDYEFQKLNRDIPLTETFCQ 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MAR++ GKRN+LDALCDRY I RTLHG LLDAE+LA+VYLAMT GQ+ L
Sbjct: 127 ITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTGGQTALA 186
Query: 178 F----KP-KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F +P + ++I+ ++ + + A++ ELV H L + K G C+W+
Sbjct: 187 FSMEGEPNEEQKGDDIQRIVRPVRGLRVIKASAEELVAHEARLDLVVK-KGGHCLWRP 243
>gi|410641522|ref|ZP_11352042.1| DNA polymerase III subunit epsilon [Glaciecola chathamensis S18K6]
gi|410139055|dbj|GAC10229.1| DNA polymerase III subunit epsilon [Glaciecola chathamensis S18K6]
Length = 235
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 152/235 (64%), Gaps = 8/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGN H YINP R E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPRQGHRIIEIGCVELVNRRLTGNTFHVYINPQRLIEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY--SNFTKYIYRITD 120
++L +K F++I +F +++ ++++IHNA FDVGF+D E + T + + D
Sbjct: 62 EYLLDKPVFADIAADFAQFINGAQLVIHNAPFDVGFMDHEFDRVASMGGKKTADMCTVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR+IH G++N+LDALC RY I HR LHG LLD+E+LA+VYL MT GQ+ LN
Sbjct: 122 TLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTALNLSG 181
Query: 181 KINN--SNNIETKIKIP---NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K N+ + +E ++ N + + A ++EL +H L + K G C+W++
Sbjct: 182 KSNSDGGSQVEPIRRLDPSLNQLKVLRATADELAEHEKRLDLVTKEG-GSCLWRE 235
>gi|291613978|ref|YP_003524135.1| DNA polymerase III, subunit epsilon [Sideroxydans lithotrophicus
ES-1]
gi|291584090|gb|ADE11748.1| DNA polymerase III, epsilon subunit [Sideroxydans lithotrophicus
ES-1]
Length = 233
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 147/230 (63%), Gaps = 5/230 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ GHRIIE+ +E+ R+++ H YINP R+ ++ A A+HGLT
Sbjct: 2 RQIVLDTETTGLDPKQGHRIIEVAAIELNGRKVSERTFHRYINPEREIDEGAAAVHGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L+++ KF+E+ L +++ +E+IIHNA FD+GFL+ EL+L G + DTL
Sbjct: 62 DRLQDEPKFAEVAPALLEFIAGAELIIHNAPFDIGFLNAELALAGLPLLNNPVI---DTL 118
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
+A+++H GK+N+L+ALCDRY + HRTLHG LLD ELLAEVYL MTRGQ +L +
Sbjct: 119 KVAKELHPGKKNNLNALCDRYQVDNSHRTLHGALLDTELLAEVYLGMTRGQESLLGEERS 178
Query: 181 KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + I ++ + A+ +EL H L I+K S G C+WK+
Sbjct: 179 EEDGVQFTASGEAICLSVRVLPASEDELALHRAQLEDIEKASKGSCLWKR 228
>gi|410645262|ref|ZP_11355729.1| DNA polymerase III subunit epsilon [Glaciecola agarilytica NO2]
gi|410135192|dbj|GAC04128.1| DNA polymerase III subunit epsilon [Glaciecola agarilytica NO2]
Length = 235
Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 104/235 (44%), Positives = 152/235 (64%), Gaps = 8/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGN H YINP R E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPRQGHRIIEIGCVELVNRRLTGNTFHVYINPQRLIEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY--SNFTKYIYRITD 120
++L +K F++I +F +++ ++++IHNA FDVGF+D E + T + + D
Sbjct: 62 EYLLDKPVFADIAADFAQFINGAQLVIHNAPFDVGFMDHEFDRVASMGGKKTADMCTVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR+IH G++N+LDALC RY I HR LHG LLD+E+LA+VYL MT GQ+ LN
Sbjct: 122 TLEMARQIHPGQKNNLDALCKRYGIDNSHRELHGALLDSEILADVYLMMTGGQTALNLSG 181
Query: 181 KINN--SNNIETKIKIP---NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K N+ + +E ++ N + + A ++EL +H L + K G C+W++
Sbjct: 182 KSNSDGGSQVEPIRRLDPSLNQLKVLRATADELAEHEKRLDLVAKEG-GSCLWRE 235
>gi|410632877|ref|ZP_11343527.1| DNA polymerase III subunit epsilon [Glaciecola arctica BSs20135]
gi|410147550|dbj|GAC20394.1| DNA polymerase III subunit epsilon [Glaciecola arctica BSs20135]
Length = 235
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 152/236 (64%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ GHRIIEIGCVE+ NR++TGN H YINP R E+ A+ +HG+T
Sbjct: 2 RQIILDTETTGLDPKQGHRIIEIGCVEMINRRLTGNTFHVYINPQRLVEQEAIGVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDME---LSLLGYSNFTKYIYRIT 119
++L +K FS I F++++ ++++IHNA FD+GF+D E LS L K + +
Sbjct: 62 EYLADKPVFSTIAKEFIDFIYGAQLVIHNAPFDIGFMDHEFNRLSGLAVKESAK-MCTVL 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL +AR+IH G++N+LDALC RY I HR HG LLDAE+LA+VYL MT GQ++LN
Sbjct: 121 DTLDLARQIHPGQKNNLDALCRRYGIDNSHREKHGALLDAEILADVYLMMTGGQTDLNLS 180
Query: 180 PKINNSNNIETKI---KIPNNIPIK--LANSNELVQHNMILSKIDKHSNGRCIWKK 230
K ++ ++ + + P+K +A ++EL QH L I G CIW++
Sbjct: 181 GKASSEGGVQIEAIRRLSTDRKPLKVVMATADELEQHESRLD-IVAEKGGACIWRE 235
>gi|395233976|ref|ZP_10412209.1| DNA polymerase III subunit epsilon [Enterobacter sp. Ag1]
gi|394731502|gb|EJF31269.1| DNA polymerase III subunit epsilon [Enterobacter sp. Ag1]
Length = 243
Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHRIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F ++ D+FL+Y+ +E++IHNA+FD+GF+D E S L T +
Sbjct: 67 GIADEFLADKPTFDQVADSFLDYIRGAELVIHNASFDIGFMDYEFSKLRRDIPKTDTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L MARK+ GKRNSLDALC RY I RTLHG LLDA++LA+VYL MT GQ++L
Sbjct: 127 VTDSLAMARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTSLK 186
Query: 178 FKPKINNSNNIETK-----IKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + + ++ + + A+ ELV H L + K G C+W+
Sbjct: 187 FSMEGDVQQQQGSGGIQRVVRRATGMRVIHASDEELVAHESRLDLVQK-KGGSCLWR 242
>gi|409426222|ref|ZP_11260784.1| DNA polymerase III subunit epsilon [Pseudomonas sp. HYS]
Length = 250
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/240 (43%), Positives = 157/240 (65%), Gaps = 13/240 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIG VE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 7 RSVVLDTETTGMPVTDGHRIIEIGGVELMGRRLTGRHFHVYLQPDRESDEGAIGVHGITD 66
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
FL +K +F+E+ D F ++ +++IIHNAAFDVGF++ E +LLG ++ T++ I
Sbjct: 67 SFLLDKPRFAEVADEFFEFIQGAQLIIHNAAFDVGFINNEFALLGQRDRADITQHCT-IL 125
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL++AR H G+RNSLDALC RY + R LHG LLD+ELLA+VYL MT GQ++L+
Sbjct: 126 DTLMLARSRHPGQRNSLDALCKRYGVDNSGRELHGALLDSELLADVYLNMTGGQTSLSLA 185
Query: 180 -----PKINNSNNIETKI-KIP-NNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ +N ++I ++P + P ++ A+ EL H L I K + G +W++
Sbjct: 186 GHGADGEEEGQDNRASEIRRLPASRQPGRIIRASEQELELHMARLEAIAKSAGGPALWQQ 245
>gi|54297294|ref|YP_123663.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
gi|53751079|emb|CAH12490.1| hypothetical protein lpp1339 [Legionella pneumophila str. Paris]
Length = 233
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 150/225 (66%), Gaps = 4/225 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ GHR+IEIGC+E+ +R++TG + H Y+NP R+ ++ A +HG++T
Sbjct: 2 RQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGIST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F +IV F+ +V SE+IIHNA FDVGFL+ EL + ++ + RI DTL
Sbjct: 62 EFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
++AR+ H G+RNSLDALC RY I +R LHG LLDAE+LA VYLAMT GQS+L +
Sbjct: 122 ILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVES 181
Query: 181 KINNSNNIETKIK-IPNNIPIKL-ANSNELVQHNMILSKIDKHSN 223
++ S +IK + P+ + AN EL+QH + I K S
Sbjct: 182 SLSQSKIKTQEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKSG 226
>gi|229845439|ref|ZP_04465569.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
gi|229811635|gb|EEP47334.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 6P18H1]
Length = 256
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 153/243 (62%), Gaps = 15/243 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F EI +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKEIAQDFLDYINGAELLIHNAPFDVGFMDYEFCKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185
Query: 177 ---NFKPKI------NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCI 227
+ + ++ + I++ + +N+ + +EL H +L I+K S C+
Sbjct: 186 AEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTDDELQAHLELLKMINKKSGNNCL 245
Query: 228 WKK 230
W K
Sbjct: 246 WDK 248
>gi|417954503|ref|ZP_12597537.1| DNA polymerase III subunit epsilon [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|342815223|gb|EGU50147.1| DNA polymerase III subunit epsilon [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 244
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 151/238 (63%), Gaps = 11/238 (4%)
Query: 1 MHRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
HR +VLD ETTG+N GHRIIEIG VEI NR++TG + H YI P RD + A+
Sbjct: 9 QHRIVVLDTETTGMNQEGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPDRDIQSEAV 68
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKY 114
+HG+T +FL +K ++ ++ FL+++ +E++ HNA FD GF+D E +L + T
Sbjct: 69 EVHGITDEFLVDKPEYQDVHAEFLDFIKGAELVAHNAPFDTGFMDYEFGMLDPTIGKTDD 128
Query: 115 IYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
++TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 YCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 188
Query: 175 NLNFKPKINNSNNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+L F +N + E + + + + A ++E+ HN L ++K NG C+W+
Sbjct: 189 SLQFNAGSSNDDGGEAIKRAASGRKALKVLRATADEIDAHNKRLDIVEK--NGSCLWR 244
>gi|429333148|ref|ZP_19213853.1| DNA polymerase III subunit epsilon [Pseudomonas putida CSV86]
gi|428762154|gb|EKX84363.1| DNA polymerase III subunit epsilon [Pseudomonas putida CSV86]
Length = 248
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 143/237 (60%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHR+IEIGCVE+ R+++G + H Y+ P R S+++A+ +HG+T
Sbjct: 7 RSVVLDTETTGMPVTDGHRVIEIGCVELIGRRLSGRHFHVYLQPDRPSDEAAIGVHGITD 66
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY--RITD 120
FL K +F+E+ D F ++ + ++IHNA+FDVGFL+ E +L+G + I D
Sbjct: 67 AFLVGKPRFAEVADEFFEFIQGARLVIHNASFDVGFLNNEFALIGQQDRADLSQHCEILD 126
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ H G+RNSLDALC RY I R LHG LLD+ELLA+V+LAMT GQ++L+
Sbjct: 127 TLMMARERHPGQRNSLDALCKRYGIDNSGRELHGALLDSELLADVFLAMTGGQTSLSLAG 186
Query: 181 KINNSNNIETKIKIPNNIP-------IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ +P I A EL H L + K + +W++
Sbjct: 187 TEGEGEGAANQGSEIRRLPASRQAGRIIRATPEELEAHLARLEAVAKSAGAPALWQQ 243
>gi|148546962|ref|YP_001267064.1| DNA polymerase III subunit epsilon [Pseudomonas putida F1]
gi|148511020|gb|ABQ77880.1| DNA polymerase III, epsilon subunit [Pseudomonas putida F1]
Length = 252
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 148/240 (61%), Gaps = 16/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ + +GHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 8 RFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITD 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
FL K +F ++ + F ++ + ++IHNAAFDVGF++ E +LLG + T D
Sbjct: 68 AFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFDVGFINNEFALLGQQDRADISQHCTILD 127
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLL+AR H G+RNSLDALC RY+I R LHG LLD+ELLA+VYLAMT GQ++L+
Sbjct: 128 TLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLA- 186
Query: 181 KINNSNNIETKIKIPNNIPIK-----------LANSNELVQHNMILSKIDKHSNGRCIWK 229
N + E + I+ +A++ EL H L+ I K + G +W+
Sbjct: 187 --GNGADAEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSAGGPSLWQ 244
>gi|56460794|ref|YP_156075.1| DNA polymerase III subunit epsilon [Idiomarina loihiensis L2TR]
gi|56179804|gb|AAV82526.1| DNA polymerase III, epsilon subunit [Idiomarina loihiensis L2TR]
Length = 235
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 102/233 (43%), Positives = 150/233 (64%), Gaps = 7/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG++ GHRIIEIGCVE+ NR++TGN+ H YINP R E+ A+ +HG+T
Sbjct: 2 RQVVLDTETTGIDPAKGHRIIEIGCVELINRKLTGNHFHVYINPERVVEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDT 121
FL +K F+++V +F+ ++ S+++IHNA FDVGF+D E S + + T + DT
Sbjct: 62 DFLTDKPVFAQVVQDFIEFIKGSQLVIHNAPFDVGFMDAEFSRIRPAVGLTNDFCSVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L +AR++ G+RNSLDALC Y++ R LHG LLDAE+LA+VYL MT GQ+ LN
Sbjct: 122 LQLAREMRPGQRNSLDALCRAYDVDNSARELHGALLDAEILADVYLMMTGGQTALNLASH 181
Query: 182 INNSNNIETKI---KIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
++ K+ +I N +K+ A ++E H L+++ K G C+W+
Sbjct: 182 GKDNQGGSQKVEHQRITNRPALKVLRATADEEALHQERLARV-KEEGGHCLWQ 233
>gi|26990834|ref|NP_746259.1| DNA polymerase III subunit epsilon [Pseudomonas putida KT2440]
gi|24985842|gb|AAN69723.1|AE016608_9 DNA polymerase III, epsilon subunit [Pseudomonas putida KT2440]
Length = 252
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 148/240 (61%), Gaps = 16/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ + +GHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 8 RFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITD 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
FL K +F ++ + F ++ + ++IHNAAFDVGF++ E +LLG + T D
Sbjct: 68 AFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFDVGFINNEFALLGQQDRADISQHCTILD 127
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLL+AR H G+RNSLDALC RY+I R LHG LLD+ELLA+VYLAMT GQ++L+
Sbjct: 128 TLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLA- 186
Query: 181 KINNSNNIETKIKIPNNIPIK-----------LANSNELVQHNMILSKIDKHSNGRCIWK 229
N + E + I+ +A++ EL H L+ I K + G +W+
Sbjct: 187 --GNGADTEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSAGGPSLWQ 244
>gi|365848119|ref|ZP_09388598.1| DNA polymerase III, epsilon subunit [Yokenella regensburgei ATCC
43003]
gi|364571320|gb|EHM48911.1| DNA polymerase III, epsilon subunit [Yokenella regensburgei ATCC
43003]
Length = 243
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGRNFHVYLKPDRLVDPEAFNVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F ++ D F+ ++ +E++IHNA+FD+GF+D E L T +
Sbjct: 67 GIADEFLLDKPTFGDVADEFIEFIRGAELVIHNASFDIGFMDYEFGKLNRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLD+++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNTKRTLHGALLDSQILAEVYLAMTGGQTSMK 186
Query: 178 FKPKINN-----SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ ++ +N+ + LA+ ELV H L + K G C+W+
Sbjct: 187 FSVEGESRQQAGDTGIQRVVRAASNLRVILASDEELVNHESRLDLVQK-KGGSCLWR 242
>gi|395448259|ref|YP_006388512.1| DnaQ [Pseudomonas putida ND6]
gi|397696865|ref|YP_006534748.1| DNA polymerase III subunit epsilon [Pseudomonas putida DOT-T1E]
gi|421520202|ref|ZP_15966869.1| DNA polymerase III subunit epsilon [Pseudomonas putida LS46]
gi|388562256|gb|AFK71397.1| DnaQ [Pseudomonas putida ND6]
gi|397333595|gb|AFO49954.1| DNA polymerase III subunit epsilon [Pseudomonas putida DOT-T1E]
gi|402755961|gb|EJX16428.1| DNA polymerase III subunit epsilon [Pseudomonas putida LS46]
Length = 252
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 148/240 (61%), Gaps = 16/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ + +GHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 8 RFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITD 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
FL K +F ++ + F ++ + ++IHNAAFDVGF++ E +LLG + T D
Sbjct: 68 AFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFDVGFINNEFALLGQQDRADISQHCTILD 127
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLL+AR H G+RNSLDALC RY+I R LHG LLD+ELLA+VYLAMT GQ++L+
Sbjct: 128 TLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLA- 186
Query: 181 KINNSNNIETKIKIPNNIPIK-----------LANSNELVQHNMILSKIDKHSNGRCIWK 229
N + E + I+ +A++ EL H L+ I K + G +W+
Sbjct: 187 --GNGADAEEDGQGAGGSEIRRIVGRAPGRVIMASAEELEAHAERLAAIAKSAGGPSLWQ 244
>gi|148358915|ref|YP_001250122.1| DNA polymerase III subunit epsilon [Legionella pneumophila str.
Corby]
gi|296106963|ref|YP_003618663.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
Alcoy]
gi|148280688|gb|ABQ54776.1| DNA polymerase III, epsilon subunit [Legionella pneumophila str.
Corby]
gi|295648864|gb|ADG24711.1| DNA polymerase III subunit epsilon [Legionella pneumophila 2300/99
Alcoy]
Length = 233
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 106/228 (46%), Positives = 150/228 (65%), Gaps = 10/228 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ GHR+IEIGC+E+ +R++TG + H Y+NP R+ ++ A +HG++T
Sbjct: 2 RQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGIST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F +IV F+ +V SE+IIHNA FDVGFL+ EL + ++ + RI DTL
Sbjct: 62 EFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
++AR+ H G+RNSLDALC RY I +R LHG LLDAE+LA VYLAMT GQS+L + +
Sbjct: 122 ILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVES 181
Query: 183 NNSNNIETKIKIPNNIPIKL-------ANSNELVQHNMILSKIDKHSN 223
+ S+ +KIK + L AN EL+QH + I K S
Sbjct: 182 SMSH---SKIKTQEIKSLSLKKPVIMKANEEELIQHQSFVEFISKKSG 226
>gi|345872584|ref|ZP_08824516.1| DNA polymerase III, epsilon subunit [Thiorhodococcus drewsii AZ1]
gi|343918374|gb|EGV29138.1| DNA polymerase III, epsilon subunit [Thiorhodococcus drewsii AZ1]
Length = 239
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 149/236 (63%), Gaps = 8/236 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ +GHRIIEIGCVE+ +R++T N+ H YI P R+ + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLDPKEGHRIIEIGCVEVVDRRLTRNSFHQYIQPDREIDAEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMEL-SLLGYSNFTKYIYRITDT 121
+FL +K +F+E+ ++F+ +V+ +E+IIHNA FDVGFLD E + + +TDT
Sbjct: 62 EFLADKPRFAEVAESFVRFVAGAELIIHNAPFDVGFLDHEFRRWRPDAPCVADLCAVTDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF--- 178
L MAR++H G+RN LDALC RY++ HR LHG LLDAE+LA+VYLAMT GQ L+
Sbjct: 122 LAMARRLHPGQRNGLDALCKRYSVDNSHRELHGALLDAEILADVYLAMTGGQVALHLGSE 181
Query: 179 -KPKINNSNNIETKIKIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + + + +I P + A+ L H LS I + C+W K
Sbjct: 182 SREEDGGGSGVVHRGRIDLGRPSLRVVRADDVALEAHARRLSAIQSACSDGCLWLK 237
>gi|386011303|ref|YP_005929580.1| DnaQ [Pseudomonas putida BIRD-1]
gi|313498009|gb|ADR59375.1| DnaQ [Pseudomonas putida BIRD-1]
Length = 252
Score = 207 bits (527), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 148/240 (61%), Gaps = 16/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ + +GHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 8 RFVILDTETTGMPVGEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITD 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
FL K +F ++ + F ++ + ++IHNAAFDVGF++ E +LLG + T D
Sbjct: 68 AFLVGKPRFGDVAEEFFQFIQGATLVIHNAAFDVGFINNEFALLGQQDRADISQHCTILD 127
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLL+AR H G+RNSLDALC RY+I R LHG LLD+ELLA+VYLAMT GQ++L+
Sbjct: 128 TLLLARSRHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLA- 186
Query: 181 KINNSNNIETKIKIPNNIPIK-----------LANSNELVQHNMILSKIDKHSNGRCIWK 229
N + E + I+ +A++ EL H L+ I K + G +W+
Sbjct: 187 --GNGADAEEDGQGAGGSEIRRIVGRTPGRVIMASAEELEAHAERLAAIAKSAGGPSLWQ 244
>gi|437999545|ref|YP_007183278.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451813166|ref|YP_007449619.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
gi|429338779|gb|AFZ83201.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|451779135|gb|AGF50015.1| DNA polymerase III subunit epsilon [Candidatus
Kinetoplastibacterium blastocrithidii TCC012E]
Length = 228
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 144/226 (63%), Gaps = 12/226 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IV D ETTGL+ GHRI+EIGCVE+ +R IT N H YINP RD + AL++HGLT
Sbjct: 2 RQIVFDTETTGLDPAKGHRIVEIGCVEVMDRSITDNYFHVYINPDRDIDPGALSVHGLTV 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K F IV +F+ ++ ++E+I HNA+FDV F+D EL++ G Y + D+L
Sbjct: 62 DFLSDKPIFKSIVSSFIEFIRDAELIAHNASFDVKFIDSELNMAGMGPLISYCSGVVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
ARK+ GKRNSLDALCD YNIS R LHG LLDA LLA V+L+MTRGQ L I
Sbjct: 122 DQARKLRPGKRNSLDALCDFYNISNKDRVLHGALLDARLLANVWLSMTRGQDEL----II 177
Query: 183 NNSNNIETKIKIPN-----NIPIKLANSNELVQH-NMI--LSKIDK 220
NN +N + + + N+P+ A + E +H N I L KIDK
Sbjct: 178 NNKSNSYSGKNLRDNRFYLNLPVLKATTEEQKEHDNYIEDLQKIDK 223
>gi|307610085|emb|CBW99626.1| hypothetical protein LPW_13941 [Legionella pneumophila 130b]
Length = 233
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 108/235 (45%), Positives = 154/235 (65%), Gaps = 11/235 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ GHR+IEIGC+E+ +R++TG + H Y+NP R+ ++ A +HG++T
Sbjct: 2 RQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGIST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F +IV F+ +V SE+IIHNA FDVGFL+ EL + ++ + RI DTL
Sbjct: 62 EFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
++AR+ H G+RNSLDALC RY I +R LHG LLDAE+LA VYLAMT GQS+L + +
Sbjct: 122 ILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVE- 180
Query: 183 NNSNNIETKIKIPNNIPIKL-------ANSNELVQHNMILSKIDKHSNGRCIWKK 230
S+ ++KIK + L AN EL+QH + I K S G W++
Sbjct: 181 --SSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKS-GINYWEE 232
>gi|406939883|gb|EKD72813.1| DNA polymerase III subunit epsilon [uncultured bacterium]
Length = 231
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 151/233 (64%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DG+RIIEIGC+E+ NR+IT + H Y+NP RD E A A+HG+T
Sbjct: 2 RQVVLDTETTGMRVEDGNRIIEIGCIEMINRRITNKHFHVYLNPDRDVEAGAQAVHGITA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FLK+K +F+EIVD + +VS +E+IIHNA FD+ ++ E +L + + + Y I D
Sbjct: 62 EFLKDKPRFAEIVDELMAFVSGAELIIHNAPFDLAYIHAEFALTKRAWKDMSAYCA-IID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR++H G+RN+LDALC RY + R HG LLDA+LLA+VYLAMT GQS+
Sbjct: 121 TLQMARRMHAGQRNNLDALCKRYGVDHSKREHHGALLDADLLAQVYLAMTGGQSSFFDTT 180
Query: 181 KINNSNNIETKIKIPNNIPIKL----ANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + ++ + ++ L A+ EL +H+ L + K G+C+W+
Sbjct: 181 ETTTTTVTQSAQTVLSSGRQALFVLKADQAELAEHDRYLELLKK--KGQCVWE 231
>gi|90407281|ref|ZP_01215467.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3]
gi|90311564|gb|EAS39663.1| DNA polymerase III subunit epsilon [Psychromonas sp. CNPT3]
Length = 236
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 98/202 (48%), Positives = 144/202 (71%), Gaps = 5/202 (2%)
Query: 1 MHRHIVLDIETTGLN----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
++R +VLD ETTG+N I GHRIIEIGCVE+ NR++TG + H Y+ P R+ + A+
Sbjct: 6 VNRQVVLDTETTGMNKDGTIYLGHRIIEIGCVEVINRRLTGRHYHVYLQPDREVDPEAVT 65
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYI 115
+HG+T +FL++K F++I D+F++++ ++++IHNA FDVGF+D E L + T+ I
Sbjct: 66 VHGITDEFLQDKPHFADIADDFIDFIRGADLVIHNAPFDVGFMDQEFRFLNKKTQPTEEI 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
+TDTL+MA+K+ GKRN+LD LCDRY I+ HRTLHG LLDAE+LA+VYL M+ GQS
Sbjct: 126 ATVTDTLVMAKKMFPGKRNNLDILCDRYGINTKHRTLHGALLDAEILADVYLLMSGGQSK 185
Query: 176 LNFKPKINNSNNIETKIKIPNN 197
LN ++N ++ + + NN
Sbjct: 186 LNLSDDLDNMDSHTRQPRTSNN 207
>gi|52841614|ref|YP_095413.1| DNA polymerase III subunit epsilon [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|378777249|ref|YP_005185686.1| DNA polymerase III subunit epsilon [Legionella pneumophila subsp.
pneumophila ATCC 43290]
gi|52628725|gb|AAU27466.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
pneumophila str. Philadelphia 1]
gi|364508063|gb|AEW51587.1| DNA polymerase III, epsilon subunit [Legionella pneumophila subsp.
pneumophila ATCC 43290]
Length = 251
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 150/225 (66%), Gaps = 4/225 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ GHR+IEIGC+E+ +R++TG + H Y+NP R+ ++ A +HG++T
Sbjct: 20 RQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGIST 79
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F +IV F+ +V SE+IIHNA FDVGFL+ EL + ++ + RI DTL
Sbjct: 80 EFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTL 139
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
++AR+ H G+RNSLDALC RY I +R LHG LLDAE+LA VYLAMT GQS+L +
Sbjct: 140 ILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVES 199
Query: 181 KINNSNNIETKIK-IPNNIPIKL-ANSNELVQHNMILSKIDKHSN 223
++ S +IK + P+ + AN EL+QH + I K S
Sbjct: 200 SLSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKSG 244
>gi|381152866|ref|ZP_09864735.1| DNA polymerase III, epsilon subunit [Methylomicrobium album BG8]
gi|380884838|gb|EIC30715.1| DNA polymerase III, epsilon subunit [Methylomicrobium album BG8]
Length = 242
Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 157/236 (66%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL+ GHR+IEIGCVE+ NR++TGN H YINP R + A+ +HG+T
Sbjct: 9 RIVVLDTETTGLSPEQGHRVIEIGCVELVNRRLTGNRFHVYINPERVIDAGAIEVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL++K +F+ + ++FL +V +E++IHNA FDVGF++ E +LL ++ T+Y ++ D
Sbjct: 69 EFLEDKPRFAGVAEDFLAFVQGAELVIHNAPFDVGFINHEFALLDDPLASITEYC-QVFD 127
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNLNFK 179
TL AR+ H G+RNSLDALC RY + R LHG LLDAE+LA+VYL MT GQ S L+
Sbjct: 128 TLAFARQKHPGQRNSLDALCKRYGVDNSQRELHGALLDAEILADVYLLMTGGQFSLLDEA 187
Query: 180 PKINNSNNIETKI--KIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ + +E+ + +I ++ P + + EL H L+ I+K + G C+W +
Sbjct: 188 SEVQAAVAVESGLVQRIASDRPRLKVIACDPGELEAHRQRLAAIEK-AGGVCLWNR 242
>gi|85058570|ref|YP_454272.1| DNA polymerase III subunit epsilon [Sodalis glossinidius str.
'morsitans']
gi|84779090|dbj|BAE73867.1| DNA polymerase III epsilon subunit [Sodalis glossinidius str.
'morsitans']
Length = 252
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 152/240 (63%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG + H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRHFHVYLKPDRLVDPEAFNVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G++ +FL +K F+++ D FL+++ E++IHNA FD+GF+D E +L G + T
Sbjct: 67 GISDEFLADKPTFADVADEFLHFIRGGELVIHNAPFDIGFMDYEFGMLNRGIAK-TDTFC 125
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TD+LL+ARK+ GKRNSLDALCDRY I RTLHG LLDAE+LA+V+L MT GQ+ +
Sbjct: 126 KVTDSLLLARKMFPGKRNSLDALCDRYLIDNSKRTLHGALLDAEILADVFLLMTGGQTAM 185
Query: 177 NF-------KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + + I+ ++ ++ + A+ E+V H L + K G C+W+
Sbjct: 186 RFAMEGEQEQRDVGETVQIQRVQRVQTSLKVIYASDEEVVAHEQRLDLVQK-KGGSCVWR 244
>gi|397667002|ref|YP_006508539.1| DNA polymerase III subunit epsilon [Legionella pneumophila subsp.
pneumophila]
gi|395130413|emb|CCD08653.1| DNA polymerase III epsilon subunit [Legionella pneumophila subsp.
pneumophila]
Length = 233
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 105/225 (46%), Positives = 150/225 (66%), Gaps = 4/225 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ GHR+IEIGC+E+ +R++TG + H Y+NP R+ ++ A +HG++T
Sbjct: 2 RQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGIST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F +IV F+ +V SE+IIHNA FDVGFL+ EL + ++ + RI DTL
Sbjct: 62 EFLQDKPLFQDIVTEFVQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
++AR+ H G+RNSLDALC RY I +R LHG LLDAE+LA VYLAMT GQS+L +
Sbjct: 122 ILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVES 181
Query: 181 KINNSNNIETKIK-IPNNIPIKL-ANSNELVQHNMILSKIDKHSN 223
++ S +IK + P+ + AN EL+QH + I K S
Sbjct: 182 SLSQSKIKTQEIKSLSLKKPVIMKANEEELIQHQHFVEFISKKSG 226
>gi|197284137|ref|YP_002150009.1| DNA polymerase III subunit epsilon [Proteus mirabilis HI4320]
gi|194681624|emb|CAR40653.1| DNA polymerase III, epsilon subunit [Proteus mirabilis HI4320]
Length = 252
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 151/238 (63%), Gaps = 11/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPERLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++ F+EI D FL Y+ +E+IIHNA+FD+GF+D E L T+ +
Sbjct: 67 GISDEFLEDCPSFAEIADEFLAYIRGAELIIHNASFDIGFMDYEFQKLNRDIPLTETFCQ 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MAR++ GKRN+LDALCDRY I RTLHG LLDAE+LA+VYLAMT GQ+ L
Sbjct: 127 ITDSLAMARELFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILADVYLAMTGGQTALA 186
Query: 178 FKPKINN-----SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F + + ++I+ ++ + + A++ ELV H L + K G C+W+
Sbjct: 187 FSMEGESNEEQKGDDIQRIVRPVRGLRVIKASAEELVAHEARLDLVVK-KGGHCLWRP 243
>gi|54294270|ref|YP_126685.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
gi|53754102|emb|CAH15575.1| hypothetical protein lpl1335 [Legionella pneumophila str. Lens]
Length = 233
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 106/228 (46%), Positives = 150/228 (65%), Gaps = 10/228 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ GHR+IEIGC+E+ +R++TG + H Y+NP R+ ++ A +HG++T
Sbjct: 2 RQVILDTETTGIGPEQGHRVIEIGCIELIDRKLTGKHFHIYLNPQREVDEGAFRVHGIST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F +IV F+ +V SE+IIHNA FDVGFL+ EL + ++ + RI DTL
Sbjct: 62 EFLQDKPLFQDIVTEFIQFVEGSELIIHNAPFDVGFLNSELKHVKWNKTLEDYCRILDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
++AR+ H G+RNSLDALC RY I +R LHG LLDAE+LA VYLAMT GQS+L + +
Sbjct: 122 ILAREKHPGQRNSLDALCKRYEIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFTEVE- 180
Query: 183 NNSNNIETKIKIPNNIPIKL-------ANSNELVQHNMILSKIDKHSN 223
S+ ++KIK + L AN EL+QH + I K S
Sbjct: 181 --SSFSQSKIKTQEIKSLSLKKPVIMKANEEELMQHQSFVEFISKKSG 226
>gi|261856413|ref|YP_003263696.1| DNA polymerase III subunit epsilon [Halothiobacillus neapolitanus
c2]
gi|261836882|gb|ACX96649.1| DNA polymerase III, epsilon subunit [Halothiobacillus neapolitanus
c2]
Length = 237
Score = 207 bits (526), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 141/228 (61%), Gaps = 7/228 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ DGHR++EIG VE+ R++TG H Y+NP R ++ A +HGL+
Sbjct: 4 RQIVLDTETTGMPAADGHRLVEIGAVEMIERRVTGKTFHCYLNPERLVDEGAFNVHGLSD 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYIYRITDT 121
FL +K KF+++VD FL +++ +E+IIHNA FDVGFLD EL+ L +TD+
Sbjct: 64 AFLADKPKFADVVDEFLAFIAGAELIIHNAEFDVGFLDAELARLANGGRLADVAGSVTDS 123
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L +ARK H G+RNSLDALC RY+I RTLHG LLD+E+LA+VYLA+T GQ L F +
Sbjct: 124 LAIARKKHPGQRNSLDALCRRYSIDNSARTLHGALLDSEILADVYLALTGGQKTLGFDSE 183
Query: 182 INNSN---NIETKIKIPNNIP---IKLANSNELVQHNMILSKIDKHSN 223
+ + I++P + P + AN E H L + K
Sbjct: 184 HGQGDEHKQAASIIRLPADRPPLRVITANEEERAAHAAWLVTLGKEGE 231
>gi|149377452|ref|ZP_01895195.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
gi|149358293|gb|EDM46772.1| DNA polymerase III, epsilon subunit [Marinobacter algicola DG893]
Length = 236
Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 147/231 (63%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHRIIEIGCVE+ RQITG + H YINP R+ E A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPAEGHRIIEIGCVELMERQITGRHYHVYINPEREVEAEAITVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+ I D F ++ +E++IHNAAFD+GF+D E + L T + D+L
Sbjct: 62 EFLADKPKFAAIADEFFEFIKGAELVIHNAAFDIGFMDSEFARLKPVRRTTEHCGVVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ARK H G++N+LDALC RY I +R LHG LLDAE+LA+VYL +T GQ+ L+
Sbjct: 122 AIARKKHPGQKNNLDALCKRYGIDNSNRELHGALLDAEILADVYLLLTGGQTALSLDAGG 181
Query: 183 NNSNNIETKIKIP---NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + ++ N +P+ A+ +E H+ ++ + K + G +W K
Sbjct: 182 DEAGGEGGIRRLADDRNPLPVPRASDDERNAHDEFMALLAKQA-GTTVWDK 231
>gi|345429880|ref|YP_004822998.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae
T3T1]
gi|301155941|emb|CBW15411.1| DNA polymerase III epsilon subunit [Haemophilus parainfluenzae
T3T1]
Length = 253
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 107/238 (44%), Positives = 147/238 (61%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQIGAHYEGHCIIEIGAVEMINRKYTGNNFHIYIKPDRLVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K F I +F+ Y+ +E++IHNA FDVGF+D E LG T I +
Sbjct: 66 GITDEMLADKPDFKTIAQDFIEYIRGAELLIHNAPFDVGFMDYEFRKLGLDIKTTDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRNSLDALCDR I RTLHG LLDAE+LA+VYL+MT GQ++L
Sbjct: 126 TDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLSMTGGQTSLFD 185
Query: 179 KPKIN--------NSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + N + ++ + N+ + +E+ H L ++K S+G+C W
Sbjct: 186 EDHADISIIQAGANMQDRQSTVNFSQNLKVLQPTDDEIQAHLDFLKLVNKKSDGKCFW 243
>gi|238755084|ref|ZP_04616431.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
gi|238706644|gb|EEP99014.1| DNA polymerase III subunit epsilon [Yersinia ruckeri ATCC 29473]
Length = 254
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 154/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAYGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I F+ ++ +E++IHNA FD+GF+ E +L + T
Sbjct: 67 GISDEFLLDKPTFADIAPEFIEFIRGAELVIHNATFDIGFMYYEFRMLQQAIPNTDTFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LLMAR++ GKRN+LDALCDRY I RTLHG LLDAE+L+EVYLAMT GQ++L+
Sbjct: 127 ITDSLLMARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILSEVYLAMTGGQTSLS 186
Query: 178 F-----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + +++ +I+ ++ + + I AN EL H+ L + K G C+W+
Sbjct: 187 FSMEGDQNQSDSAADIQRIVRPTSGLTIIYANDEELDAHHQRLDLVQK-KGGSCLWR 242
>gi|359299710|ref|ZP_09185549.1| DNA polymerase III subunit epsilon [Haemophilus [parainfluenzae]
CCUG 13788]
gi|402306852|ref|ZP_10825887.1| DNA polymerase III, epsilon subunit [Haemophilus sputorum HK 2154]
gi|400373875|gb|EJP26800.1| DNA polymerase III, epsilon subunit [Haemophilus sputorum HK 2154]
Length = 250
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 108/234 (46%), Positives = 147/234 (62%), Gaps = 8/234 (3%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG+N+ GH IIEIG VE+ NR++TG H YI P R+ ++ A+ +H
Sbjct: 8 RQVVLDTETTGMNMTGQPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVDEEAIRVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYR 117
G+T +FL++K F+EI D+FL ++ +E+IIHNA FDV F+D E S L T I
Sbjct: 68 GITNEFLQDKPVFAEIADDFLAFIKGAELIIHNAPFDVAFMDQEFSYLKDPPPKTAEICT 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L MARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ L
Sbjct: 128 VTDSLQMARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQIALL 187
Query: 178 FKPKINNSNNIETKIKIP---NNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + E +K+ +N + A+ EL H L+ I+K S G CIW
Sbjct: 188 VDEENATAQIGEEVVKMSYDLSNAVVLNASDEELSAHETFLALIEKKSKGNCIW 241
>gi|419839278|ref|ZP_14362691.1| DNA polymerase III, epsilon subunit [Haemophilus haemolyticus
HK386]
gi|386909586|gb|EIJ74255.1| DNA polymerase III, epsilon subunit [Haemophilus haemolyticus
HK386]
Length = 256
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 150/244 (61%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H+YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHFYIKPDRPVDPEAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K F+EI FL+Y+ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPSFNEIAQPFLDYIKGAELLIHNAPFDVGFMDYEFRKLNLNVKTTDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I+ + +N+ + N +EL H +L I+K S C
Sbjct: 185 DEEESVESEVIHVVQEKAAEEIKNAVDFAHNLKLLQPNDDELQAHLELLKMINKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|317490808|ref|ZP_07949244.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
gi|365834752|ref|ZP_09376194.1| DNA polymerase III, epsilon subunit [Hafnia alvei ATCC 51873]
gi|316920355|gb|EFV41678.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
gi|364568583|gb|EHM46224.1| DNA polymerase III, epsilon subunit [Hafnia alvei ATCC 51873]
Length = 244
Score = 206 bits (525), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHRIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAYGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ FL +K F++I D FL ++ +E++IHNA FD+GF+D E L T+ +
Sbjct: 67 GISDDFLLDKPTFADIADEFLEFIRGAELVIHNAPFDIGFMDYEFRKLNRDIPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L+MAR++ GKRNSLDALC+RY I RTLHG LLD+++LA+VYL MT GQ++L
Sbjct: 127 ITDSLVMARRLFPGKRNSLDALCNRYEIDNTKRTLHGALLDSQILADVYLTMTGGQTSLT 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F K + ++ ++ + + A++ EL +H L + K G C+W+
Sbjct: 187 FSMESEGEKPRPTGEVQKIVRKMQALKVVRASAEELAEHEHRLDLVQK-KGGSCLWR 242
>gi|170722630|ref|YP_001750318.1| DNA polymerase III subunit epsilon [Pseudomonas putida W619]
gi|169760633|gb|ACA73949.1| DNA polymerase III, epsilon subunit [Pseudomonas putida W619]
Length = 254
Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 149/238 (62%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ + +GHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 8 RLVILDTETTGMPVSEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITD 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
FL K +F ++ + F ++ + ++IHNAAFDVGF++ E +LLG + T D
Sbjct: 68 AFLVGKPRFGDVAEEFFEFIQGATLVIHNAAFDVGFINNEFALLGQRDRADISQHCTILD 127
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLL+AR H G+RNSLDALC RY+I R LHG LLD+ELLA+VYLAMT GQ++L+
Sbjct: 128 TLLLARARHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSLAG 187
Query: 181 -------KINNSNNIETKIKIPNNIP--IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ S E + +I P + +A + EL H L+ I K + G +W+
Sbjct: 188 NGADGDNEGQGSGGSEIR-RITGRAPGRVIMATAEELEAHAERLAAIAKSAGGPSMWQ 244
>gi|429885885|ref|ZP_19367455.1| DNA polymerase III epsilon subunit [Vibrio cholerae PS15]
gi|429227255|gb|EKY33303.1| DNA polymerase III epsilon subunit [Vibrio cholerae PS15]
Length = 247
Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 153/239 (64%), Gaps = 13/239 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P RD + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYI 115
+HG+T +FLK+K ++ ++ + FL+++ +E++ HNA FDVGF+D E + LG + T
Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDF 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSNNIETKI-----KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L F NS + ++ + + A+++EL H L + K +G C+W+
Sbjct: 190 LQFSSATQNSGELSAELLKRARSERKALKVLAASADELQAHQDRLDIVAK--SGTCLWR 246
>gi|429213667|ref|ZP_19204831.1| DNA polymerase III subunit epsilon [Pseudomonas sp. M1]
gi|428155262|gb|EKX01811.1| DNA polymerase III subunit epsilon [Pseudomonas sp. M1]
Length = 247
Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 154/240 (64%), Gaps = 14/240 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE++ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVELEGRRLTGRHFHVYLQPDREIDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--IYRITD 120
+F+K+K +F E+ D F ++ +++IIHNAAFD+GF++ E +LLG S + + D
Sbjct: 62 EFVKDKPRFREVADEFYEFIHGAQLIIHNAAFDIGFINNEFALLGQSERAEVSDYCSVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ H G+RN+LDALC RY + R LHG LLDAE+LA+VYLAMT GQ++L+
Sbjct: 122 TLMMARERHPGQRNNLDALCKRYGVDNSGRDLHGALLDAEILADVYLAMTGGQTSLSLAG 181
Query: 181 KINNSNNIETKIKIPNNI----------PIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + P+ I + A+ EL H L+ ++K + G +W +
Sbjct: 182 QGAEGDG--SGRPQPSAIRRLAAGRALTRVIRASDEELAAHAARLAAVEKSAGGPSLWAQ 239
>gi|342904048|ref|ZP_08725850.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21621]
gi|342904650|ref|ZP_08726449.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21621]
gi|341953071|gb|EGT79585.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21621]
gi|341954057|gb|EGT80551.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21621]
Length = 256
Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 111/244 (45%), Positives = 152/244 (62%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F E+ +FL+Y++ +E+IIHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKEVAQDFLDYINGAELIIHNAPFDVGFMDYEFRKLNLNVKTNDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
K + I++ + +N+ + ++EL H +L I+K S C
Sbjct: 185 DEEESVESEVIHVVKEKAAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMINKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|387814171|ref|YP_005429654.1| DNA polymerase III subunit epsilon [Marinobacter
hydrocarbonoclasticus ATCC 49840]
gi|381339184|emb|CCG95231.1| DNA polymerase III epsilon subunit [Marinobacter
hydrocarbonoclasticus ATCC 49840]
Length = 236
Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 146/231 (63%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHRIIEIGCVE+ R++TG N H YINP R+ E A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPNEGHRIIEIGCVEVIERELTGRNYHVYINPEREVEAEAITVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K KF+E+ D F ++ +E++IHNAAFDVGF+D E + L T I D+L
Sbjct: 62 EFLADKPKFAEVADEFFEFIKGAELVIHNAAFDVGFMDSEFARLKPVRKTADHCGIVDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ARK H G++N+LDALC RY + +R LHG LLDAE+LA+VYL MT GQ+ L+
Sbjct: 122 AIARKKHPGQKNNLDALCKRYGVDNSNRDLHGALLDAEILADVYLLMTGGQTALSLDAGS 181
Query: 183 NNSNNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ +I + + A ++E H+ ++ ++K + G +W +
Sbjct: 182 GDEGGDGGIRRISGERAPLAVVRATNDEASAHDEFMAMMEKQA-GETVWSR 231
>gi|437870410|ref|ZP_20848366.1| DNA polymerase III subunit epsilon, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
gi|435335112|gb|ELP05446.1| DNA polymerase III subunit epsilon, partial [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
Length = 232
Score = 206 bits (524), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 142/220 (64%), Gaps = 10/220 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHN 212
F + I+ ++ + + + A+ EL H
Sbjct: 190 FAMEGETQRQQGEATIQRIVRQASRLRVVFASEEELAAHE 229
>gi|85713113|ref|ZP_01044147.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145]
gi|85693061|gb|EAQ31025.1| DNA polymerase III, epsilon subunit [Idiomarina baltica OS145]
Length = 236
Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 106/233 (45%), Positives = 149/233 (63%), Gaps = 8/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+N DGHRIIEIGCVE+ +R+ TGN+ H YINP R E A+A+HG+T
Sbjct: 2 RQIVLDTETTGINPDDGHRIIEIGCVELIDRKPTGNHFHVYINPERVVEDEAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RITDT 121
++L +K F+++VD F++++ S+++IHNA FDVG +D E LG Y Y + D+
Sbjct: 62 EYLADKPVFAQVVDAFIDFIKGSQLVIHNAPFDVGHMDAEFKRLGKMYGKTYDYCDVLDS 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L +AR+ G+RNSLDALC +++ R LHG LLDAE+LA+VYLAMT GQ+ L+ +
Sbjct: 122 LQLAREKRPGQRNSLDALCKAFHVDNSARELHGALLDAEILADVYLAMTGGQTALSLHGQ 181
Query: 182 INNSNNIET------KIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
++ N E IK + + A ++E QH L+ I K G C+W
Sbjct: 182 NQDNENQEPGAIAHQAIKNRPQLKVLRATADEEEQHQQRLA-IVKSEGGACLW 233
>gi|153876055|ref|ZP_02003569.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS]
gi|152067479|gb|EDN66429.1| DNA polymerase III, epsilon subunit [Beggiatoa sp. PS]
Length = 239
Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 155/236 (65%), Gaps = 15/236 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL++ DGHRIIEIGC+EI NR++T H ++ P R S+ ALA+HG+T
Sbjct: 2 RQIALDTETTGLSVKDGHRIIEIGCIEILNRRVTNKYYHQFLQPDRKSDTEALAVHGITH 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FLK+K +F EIV++F+N++ +E++IHNAAFD+ F++ EL LL + Y +ITD
Sbjct: 62 EFLKDKPRFREIVNDFMNFIKGAELLIHNAAFDMSFINRELELLHQDWQPLEHYC-KITD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
+L++A++ H G++N+LDALC RY + +R LHG LLDAE+LAEVYL MT Q +L
Sbjct: 121 SLVLAKERHPGQKNNLDALCKRYGVDNSNRQLHGALLDAEILAEVYLTMTAEQVSL---- 176
Query: 181 KINNSNNIE-----TKIKIPN---NIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ NNIE T +I + ++ + EL H L+ I+K G+C+W
Sbjct: 177 LASEGNNIEFLKNNTIKRISSKRASLTLITPTEGELQAHKQRLTAINKACGGKCLW 232
>gi|295698439|ref|YP_003603094.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola
USDA]
gi|291157346|gb|ADD79791.1| DNA polymerase III, epsilon subunit [Candidatus Riesia pediculicola
USDA]
Length = 249
Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 111/239 (46%), Positives = 154/239 (64%), Gaps = 11/239 (4%)
Query: 3 RHIVLDIETTGLN----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG++ +GH IIEIG VE+ NR++TGN H YINP R + A IH
Sbjct: 7 RKIILDTETTGMSSSGHPYEGHNIIEIGAVEMINRELTGNLFHVYINPKRSVDPKAFEIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFT-KYIYR 117
++ FLK+K FSEIVD+F++++ NSE+IIHNA+FDVGF++ ELS + YS + K I R
Sbjct: 67 KISDNFLKDKPTFSEIVDDFVDFIRNSELIIHNASFDVGFINHELSRIEYSFCSIKKICR 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITDTL +AR + GK+NSLDALCDRY+I + R++H +LDA++L+E+Y MT GQ + N
Sbjct: 127 ITDTLKIARSLFPGKKNSLDALCDRYHIDRSKRSVHSAILDAKILSEIYKLMTGGQISFN 186
Query: 178 FKPKINNSNN------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F + N + K K + ANS E H IL+ I+K + +W+K
Sbjct: 187 FDHDLEKKENFLNQYYFQRKRKRTRESLVIYANSKEQYCHEFILNTIEKKIGKKTLWRK 245
>gi|145631632|ref|ZP_01787397.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
gi|144982766|gb|EDJ90295.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
Length = 256
Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 109/243 (44%), Positives = 152/243 (62%), Gaps = 15/243 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRSVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F EI +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKEIAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLDLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185
Query: 179 KPKINNSN-----------NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCI 227
+ + S+ I++ + +N+ + ++EL H L ++K S C+
Sbjct: 186 EEESVESDVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNKKSGNNCL 245
Query: 228 WKK 230
W K
Sbjct: 246 WDK 248
>gi|221134302|ref|ZP_03560607.1| DNA polymerase III, epsilon subunit [Glaciecola sp. HTCC2999]
Length = 240
Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 157/239 (65%), Gaps = 12/239 (5%)
Query: 3 RHIVLDIETTGLN------IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R IVLD ETTG++ GHRIIEIGCVE+ +R++TGN+ H YINP +D + A+A
Sbjct: 2 RQIVLDTETTGMSRESGEHFTHGHRIIEIGCVELVDRKLTGNHYHVYINPQQDIDPEAIA 61
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY-- 114
+HG+T +FL++K F EI F++++ +E++IHNA FDVGF+D+E +L + T+
Sbjct: 62 VHGITNEFLEDKPLFKEIAQGFIDFIDGAELVIHNAPFDVGFMDLEFALNPATALTRTEK 121
Query: 115 IYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
+ DTL++A+K+ G+RN+LDALC Y I HR LHG LLDAE+LA+VYL MT GQ
Sbjct: 122 FCTVLDTLVLAKKMRPGQRNNLDALCREYGIDNSHRDLHGALLDAEILADVYLLMTGGQE 181
Query: 175 NLNFKPKINNSNNIETKIKI-PNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
L+ + +S+ + K+ P +K+ A ++EL +H L +++ S G C++++
Sbjct: 182 TLSLETGTKSSSGFDNVEKLAPRTSALKIIHATADELTEHESRLDIVEQAS-GNCLYRQ 239
>gi|146282599|ref|YP_001172752.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri A1501]
gi|386020884|ref|YP_005938908.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 4166]
gi|145570804|gb|ABP79910.1| DNA polymerase III, epsilon chain [Pseudomonas stutzeri A1501]
gi|327480856|gb|AEA84166.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 4166]
Length = 241
Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 145/218 (66%), Gaps = 9/218 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K +F +I D F ++ +++++IHNAAFD+GF++ E +LLG + + T D
Sbjct: 62 EFLVDKPRFRDIADEFFEFIKDAQLVIHNAAFDLGFINNEFALLGQQDRAEITDHCTVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLLMAR+ H G+RNSLDALC RY + R LHG LLDAE+LA+V+L MT GQ+NL+
Sbjct: 122 TLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNLSLAG 181
Query: 181 KINNSNNIETKI----KIPNNIP---IKLANSNELVQH 211
+S+ + ++P + P + A+ EL H
Sbjct: 182 DGESSDGGRPQPSPIRRLPADRPRTAVLRASDEELAAH 219
>gi|386815699|ref|ZP_10102917.1| DNA polymerase III, epsilon subunit [Thiothrix nivea DSM 5205]
gi|386420275|gb|EIJ34110.1| DNA polymerase III, epsilon subunit [Thiothrix nivea DSM 5205]
Length = 242
Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 151/235 (64%), Gaps = 11/235 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG++ +GHRIIEIGCVE+ NR++TGNN H Y+ P R+ + A+ +HG+T
Sbjct: 6 RQIILDTETTGIDPKEGHRIIEIGCVEMINRRLTGNNFHQYLQPDREIDAEAIEVHGITN 65
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSN--FTKYIYRITD 120
+FL +K +F EI ++ L Y++ +E+IIHNA FD+GF++ EL L+ + T Y +TD
Sbjct: 66 EFLADKPRFEEIAEDLLAYLNGAELIIHNAPFDIGFINNELQLVDPRSKPVTDYC-SVTD 124
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR++ G+R SLDALC RY I+ HRTLHG LLD+E+LA+VYLAMT GQ +L
Sbjct: 125 TLVMARQMFPGQRASLDALCKRYEINNAHRTLHGALLDSEILADVYLAMTGGQVSLLLGG 184
Query: 181 KINNSNNIETKIKIPNNIPIKL-------ANSNELVQHNMILSKIDKHSNGRCIW 228
N+ I I A+ EL H ++ I K S G+C++
Sbjct: 185 DAENAGQSAAGGGGIRRIAIDTSRLRVISASEKELAAHAERVAAITK-SAGKCLF 238
>gi|238921062|ref|YP_002934577.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella
ictaluri 93-146]
gi|238870631|gb|ACR70342.1| DNA polymerase III, epsilon subunit, putative [Edwardsiella
ictaluri 93-146]
Length = 243
Score = 206 bits (523), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 147/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GHRIIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQVGAHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPDRLVDPEAFTVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ FL +K F+E+ D FL ++ +E++IHNA FD+GF+D E + LG T+
Sbjct: 67 GISDDFLLDKPSFAEVADEFLAFIRGAELVIHNAPFDIGFMDYEFAKLGRDLPKTETFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L+MAR++ GKRNSLDALC+RY I RTLHG LLDA++LA+VYL MT GQ+ L
Sbjct: 127 ITDSLVMARRLFPGKRNSLDALCNRYEIDNSKRTLHGALLDAQILADVYLIMTGGQTLLA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + ++ I ++ + + A+ EL H L + K + C+W+
Sbjct: 187 FSSDGDGASQSQASEIRRVVRGAKGLRVVYASEVELAAHEQRLDLVQKKGDS-CLWR 242
>gi|410617614|ref|ZP_11328579.1| DNA polymerase III subunit epsilon [Glaciecola polaris LMG 21857]
gi|410162745|dbj|GAC32717.1| DNA polymerase III subunit epsilon [Glaciecola polaris LMG 21857]
Length = 235
Score = 205 bits (522), Expect = 9e-51, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 151/235 (64%), Gaps = 8/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHRIIEIGCVE+ NR++TGN H Y+NP R E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPRQGHRIIEIGCVELLNRRLTGNTFHAYVNPQRLIEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF--TKYIYRITD 120
++L +K FS++ +F+ +++ ++++IHNA FDVGF+D E + + T I + D
Sbjct: 62 EYLLDKPVFSDVAADFVQFITGAQLVIHNAPFDVGFMDHEFARVASMQGLKTADICTVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR+IH G++N+LDALC RY I HR HG LLD+E+LA+VYL MT GQ++LN
Sbjct: 122 TLNMARQIHPGQKNNLDALCKRYGIDNSHREKHGALLDSEILADVYLMMTGGQTDLNLSG 181
Query: 181 KINNSNN-----IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K N+ I N + + A ++E+ +H L ++K G C+W++
Sbjct: 182 KSNSDGGGKVEHIRRLDPSRNQLKVLRATADEIEEHEKRLDLVNK-EGGSCLWRE 235
>gi|223041838|ref|ZP_03612026.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202]
gi|223017331|gb|EEF15754.1| DNA polymerase III subunit epsilon [Actinobacillus minor 202]
Length = 255
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 151/241 (62%), Gaps = 11/241 (4%)
Query: 1 MHRHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
+HR +VLD ETTG+N GH IIEIG VE+ NR++TG H YI P R+ E+ A+
Sbjct: 6 IHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVEEEAIK 65
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYI 115
+HG+T +FL++K F+EIVD F+ ++ +E++IHNA FDVGF+D E S L T +
Sbjct: 66 VHGITNEFLQDKPSFAEIVDEFVAFIKGAELVIHNAPFDVGFMDHEFSFLANPPPKTAEM 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
+TD+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ
Sbjct: 126 CTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQIA 185
Query: 176 LNFKPKINNSNNIETKIKIP------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L + + + + ++ + P +N I A+ +EL H + L + K S CIW
Sbjct: 186 LLAEEEHDENPQVDLLEEGPKIAFDTSNSVILKADESELEAHQLFLKLLYKKSKQNCIWG 245
Query: 230 K 230
K
Sbjct: 246 K 246
>gi|372268032|ref|ZP_09504080.1| DNA polymerase III subunit epsilon [Alteromonas sp. S89]
Length = 240
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/240 (44%), Positives = 148/240 (61%), Gaps = 15/240 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ GHRIIEIGCVE+ NR++TG + H YINP R+ + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLDPKSGHRIIEIGCVELINRKLTGRHYHQYINPEREVDDGAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR--ITD 120
+FL +K FS++VD F+ + +E++IHNA FDVGF+D EL LG + + D
Sbjct: 62 EFLVDKPIFSQVVDEFMTFCDGAELVIHNAPFDVGFIDAELKRLGSPRWQAVATHCGVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NF 178
TL +AR+ H G++N+LDALC RY + R LHG LLDAE+LA+VYL MT GQ++L +
Sbjct: 122 TLALAREKHPGQKNNLDALCKRYFVDNSQRDLHGALLDAEILADVYLIMTGGQTDLLASS 181
Query: 179 KPKINNSNNIETKIKIPNNI--------PIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
N E P I P+ + AN+ EL H L++++K S G+ W
Sbjct: 182 DASAENDQEQEANAAEPGAIRRLSAERAPLNVVRANAQELDAHAAFLAQLEK-SGGKHFW 240
>gi|153825368|ref|ZP_01978035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
gi|183179467|ref|ZP_02957678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
gi|229524236|ref|ZP_04413641.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
VL426]
gi|229528763|ref|ZP_04418153.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
gi|254225776|ref|ZP_04919381.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
gi|254286458|ref|ZP_04961415.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
gi|262192140|ref|ZP_06050301.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
gi|297580875|ref|ZP_06942800.1| DNA polymerase III [Vibrio cholerae RC385]
gi|384425198|ref|YP_005634556.1| DNA polymerase III subunit epsilon [Vibrio cholerae LMA3984-4]
gi|417821565|ref|ZP_12468179.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE39]
gi|417825468|ref|ZP_12472056.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE48]
gi|422911072|ref|ZP_16945700.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-09]
gi|423957540|ref|ZP_17735283.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-40]
gi|423985520|ref|ZP_17738834.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-46]
gi|424660736|ref|ZP_18097983.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-16]
gi|125621682|gb|EAZ50011.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V51]
gi|149741052|gb|EDM55121.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-2]
gi|150423407|gb|EDN15351.1| DNA polymerase III, epsilon subunit [Vibrio cholerae AM-19226]
gi|183012878|gb|EDT88178.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MZO-3]
gi|229332537|gb|EEN98023.1| DNA polymerase III epsilon subunit [Vibrio cholerae 12129(1)]
gi|229337817|gb|EEO02834.1| DNA polymerase III epsilon subunit [Vibrio cholerae bv. albensis
VL426]
gi|262031989|gb|EEY50566.1| DNA polymerase III epsilon subunit [Vibrio cholerae CT 5369-93]
gi|297534701|gb|EFH73537.1| DNA polymerase III [Vibrio cholerae RC385]
gi|327484751|gb|AEA79158.1| DNA polymerase III epsilon subunit [Vibrio cholerae LMA3984-4]
gi|340039196|gb|EGR00171.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE39]
gi|340046953|gb|EGR07883.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE48]
gi|341632444|gb|EGS57310.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-09]
gi|408050109|gb|EKG85282.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-16]
gi|408656532|gb|EKL27626.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-40]
gi|408663637|gb|EKL34499.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-46]
Length = 247
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 13/239 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P RD + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYI 115
+HG+T +FLK+K ++ ++ + FL+++ +E++ HNA FDVGF+D E + LG + T
Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDF 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSNNIETK-IKIPNN----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L F NS + + +K + + + A+++EL H L + K +G C+W+
Sbjct: 190 LQFSSATQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLDIVAK--SGTCLWR 246
>gi|422335530|ref|ZP_16416528.1| DNA polymerase III subunit epsilon [Escherichia coli 4_1_47FAA]
gi|373243485|gb|EHP62990.1| DNA polymerase III subunit epsilon [Escherichia coli 4_1_47FAA]
Length = 222
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 98/181 (54%), Positives = 129/181 (71%), Gaps = 5/181 (2%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPERLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F+NY+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMNYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 189
Query: 178 F 178
F
Sbjct: 190 F 190
>gi|226328903|ref|ZP_03804421.1| hypothetical protein PROPEN_02805 [Proteus penneri ATCC 35198]
gi|225202089|gb|EEG84443.1| DNA polymerase III, epsilon subunit [Proteus penneri ATCC 35198]
Length = 250
Score = 205 bits (522), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/238 (45%), Positives = 152/238 (63%), Gaps = 11/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRNFHVYIKPERLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++ F++I D FL Y+ +E+IIHNA+FD+GF+D E L T+ +
Sbjct: 67 GISDEFLEDCPSFADIADEFLEYIRGAELIIHNASFDIGFMDYEFRKLNRDIPPTETFCQ 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MAR + GKRN+LDALCDRY I RTLHG LLDAE+L++VYLAMT GQ+ L
Sbjct: 127 ITDSLAMARALFPGKRNNLDALCDRYLIDNSKRTLHGALLDAEILSDVYLAMTGGQTALA 186
Query: 178 FKPKINNSNNIE----TKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F + ++N E +I+ P + + + A + EL +H L ++K G C+W+
Sbjct: 187 FSMEGESNNEQEQNDIQRIERPVSGLRVIRATAEELAEHESRLDLVEK-KGGHCLWRP 243
>gi|329296922|ref|ZP_08254258.1| DNA polymerase III subunit epsilon [Plautia stali symbiont]
Length = 237
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 103/228 (45%), Positives = 147/228 (64%), Gaps = 10/228 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N+I +GHRIIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNMIGVHYEGHRIIEIGAVEVINRRLTGNNFHMYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F++I D FL+Y+ +E++IHNA+FD+GF+D E ++L T+ +
Sbjct: 67 GIADEFLADKPTFAQIADEFLDYIRGAELVIHNASFDIGFMDYEFAMLQRDIGKTETFCQ 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MA K+ GKRNSLDALC+R+ I RTLHG LLDA +LAEV+L MT Q++L
Sbjct: 127 ITDSLAMASKMFPGKRNSLDALCNRFEIDNSKRTLHGALLDAGILAEVFLTMTGCQTSLA 186
Query: 178 FKPKINNSNNIETK-----IKIPNNIPIKLANSNELVQHNMILSKIDK 220
F + SN +E + ++ + + A+ E+V H L + K
Sbjct: 187 FSMEGEQSNQVEGEHIQRIVRPGAGLRVVSASDEEIVAHESRLDLVQK 234
>gi|315634676|ref|ZP_07889960.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
segnis ATCC 33393]
gi|315476624|gb|EFU67372.1| DNA-directed DNA polymerase III epsilon subunit [Aggregatibacter
segnis ATCC 33393]
Length = 253
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 148/237 (62%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPEAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K FS+I + F+ Y+ +E++IHNA FDVGF+D E + L T I ++
Sbjct: 69 GITDEMLADKPDFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICQV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GK+N+LDALC R I RTLHG LLDAE+LA+VYLAMT GQ++L
Sbjct: 129 TDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTGGQTSLFD 188
Query: 177 -NFKPKIN--NSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N I N I++ + +N+ + EL H L I+K S C+W +
Sbjct: 189 ENESEIIQQVNEQQIQSAVAFSHNLRLLTPTEEELQAHLEYLKLINKKSKDNCLWTR 245
>gi|153829952|ref|ZP_01982619.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
gi|422923536|ref|ZP_16956684.1| DNA polymerase III, epsilon subunit [Vibrio cholerae BJG-01]
gi|148874587|gb|EDL72722.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 623-39]
gi|341643966|gb|EGS68225.1| DNA polymerase III, epsilon subunit [Vibrio cholerae BJG-01]
Length = 247
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 152/239 (63%), Gaps = 13/239 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P RD + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELS-LLGYSNFTKYI 115
+HG+T +FLK+K ++ ++ + FL+++ +E++ HNA FDVGF+D E + L G T
Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFAKLSGAIGKTSDF 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSNNIETKI-----KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L F NS + ++ + + A+++EL H L + K +G C+W+
Sbjct: 190 LQFSSATQNSGELSAELLKRARSERKALKVLAASADELQAHQDRLDIVAK--SGTCLWR 246
>gi|387773857|ref|ZP_10129142.1| DNA polymerase III, epsilon subunit [Haemophilus parahaemolyticus
HK385]
gi|386903678|gb|EIJ68485.1| DNA polymerase III, epsilon subunit [Haemophilus parahaemolyticus
HK385]
Length = 255
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 148/239 (61%), Gaps = 11/239 (4%)
Query: 1 MHRHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
+HR +VLD ETTG+N GH IIEIG VE+ NR++TG H YI P R+ E+ A+
Sbjct: 7 IHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTYHVYIKPPREVEEEAIK 66
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYI 115
+HG+T +FL++K F+EI D F++++ +E++IHNA FDVGF+D E S L T +
Sbjct: 67 VHGITNEFLQDKPSFAEIADEFVDFIKGAELVIHNAPFDVGFMDHEFSFLKNPPPKTAEM 126
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
+TD+L MARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ
Sbjct: 127 CTVTDSLAMARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQIA 186
Query: 176 LNFKPKINNSNNIETKIKIP------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
L N +E+ +I + + A S+EL H ++ ++K S CIW
Sbjct: 187 LLADETEENIQAVESHEEIAREDVDSSGTIVFQATSSELKAHEAFMALLNKKSKENCIW 245
>gi|386389739|ref|ZP_10074547.1| DNA polymerase III, epsilon subunit [Haemophilus
paraphrohaemolyticus HK411]
gi|385694894|gb|EIG25474.1| DNA polymerase III, epsilon subunit [Haemophilus
paraphrohaemolyticus HK411]
Length = 254
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 149/241 (61%), Gaps = 11/241 (4%)
Query: 1 MHRHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
+HR +VLD ETTG+N GH IIEIG VE+ NR++TG H YI P R+ E+ A+
Sbjct: 6 IHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTYHVYIKPPREVEEEAIK 65
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYI 115
+HG+T +FL++K F+EI F++++ +E++IHNA FDVGF+D E S L T +
Sbjct: 66 VHGITNEFLQDKPSFAEIAHEFVDFIKGAELVIHNAPFDVGFIDHEFSFLKNPPPKTAEM 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
+TD+L MARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ
Sbjct: 126 CTVTDSLAMARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQIA 185
Query: 176 LNFKPKINNSNNIETKIKIP------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L N +E++ +I + + A S+EL H ++ I+K S CIW
Sbjct: 186 LLADETEENVQAVESQEEIAREDVDSSGTIVFQATSSELEAHEAFIALINKKSKENCIWL 245
Query: 230 K 230
K
Sbjct: 246 K 246
>gi|410623347|ref|ZP_11334164.1| DNA polymerase III subunit epsilon [Glaciecola pallidula DSM 14239
= ACAM 615]
gi|410157269|dbj|GAC29538.1| DNA polymerase III subunit epsilon [Glaciecola pallidula DSM 14239
= ACAM 615]
Length = 233
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 151/232 (65%), Gaps = 6/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+N +GHRIIEIGCVE+ NR++TGN H YINP RD E+ A+A+HG+T
Sbjct: 2 RQIVLDTETTGINPKEGHRIIEIGCVEMVNRKLTGNTYHVYINPHRDIEEEAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDT 121
+FLK+ F +I F++++ +++IIHNA FD+GF+D E +L S T I + DT
Sbjct: 62 EFLKDMPAFKQIAQEFIDFIKGAQLIIHNAPFDIGFMDNEFALNNSSIRNTSQICTVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L +AR++ G++N+L+ALC Y + HRT HG LLD+E+LAEVYL MT GQ+ +++ +
Sbjct: 122 LALAREMRPGQKNNLNALCRVYGVDNTHRTHHGALLDSEILAEVYLWMTGGQTAMSWAHE 181
Query: 182 INNSN----NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ N + + + A+++EL H L KI+K S +W+
Sbjct: 182 SEGADPKNKNAPRAVNSKGVLKVVKASADELSNHEAYLDKIEKQSQ-EVVWR 232
>gi|437203115|ref|ZP_20712059.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
gi|435212106|gb|ELN95140.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 13183-1]
Length = 253
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 101/220 (45%), Positives = 142/220 (64%), Gaps = 10/220 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 189
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHN 212
F + I+ ++ + + + A+ EL N
Sbjct: 190 FAMEGETQRQQGEATIQRIVRQASRLRVVFASEEELAAQN 229
>gi|229522180|ref|ZP_04411597.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
gi|419830683|ref|ZP_14354168.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-1A2]
gi|419834366|ref|ZP_14357821.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-61A2]
gi|419837941|ref|ZP_14361379.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-46B1]
gi|421344651|ref|ZP_15795054.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-43B1]
gi|421354933|ref|ZP_15805265.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-45]
gi|422918072|ref|ZP_16952390.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-02A1]
gi|423735898|ref|ZP_17709090.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-41B1]
gi|423822974|ref|ZP_17716984.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55C2]
gi|423856939|ref|ZP_17720791.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-59A1]
gi|423883567|ref|ZP_17724378.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-60A1]
gi|423998497|ref|ZP_17741749.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-02C1]
gi|424010236|ref|ZP_17753170.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-44C1]
gi|424017394|ref|ZP_17757223.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55B2]
gi|424020319|ref|ZP_17760102.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-59B1]
gi|424625693|ref|ZP_18064154.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-50A1]
gi|424630180|ref|ZP_18068464.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-51A1]
gi|424634224|ref|ZP_18072324.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-52A1]
gi|424637302|ref|ZP_18075310.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55A1]
gi|424641209|ref|ZP_18079092.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-56A1]
gi|424649277|ref|ZP_18086940.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-57A1]
gi|443528195|ref|ZP_21094239.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-78A1]
gi|229341105|gb|EEO06110.1| DNA polymerase III epsilon subunit [Vibrio cholerae TM 11079-80]
gi|341636954|gb|EGS61648.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-02A1]
gi|395940731|gb|EJH51412.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-43B1]
gi|395954058|gb|EJH64671.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-45]
gi|408011634|gb|EKG49441.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-50A1]
gi|408017686|gb|EKG55173.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-52A1]
gi|408022829|gb|EKG60020.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-56A1]
gi|408023090|gb|EKG60270.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55A1]
gi|408032095|gb|EKG68691.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-57A1]
gi|408054267|gb|EKG89251.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-51A1]
gi|408620456|gb|EKK93468.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-1A2]
gi|408629324|gb|EKL02023.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-41B1]
gi|408634950|gb|EKL07185.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55C2]
gi|408640286|gb|EKL12082.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-59A1]
gi|408640633|gb|EKL12421.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-60A1]
gi|408649188|gb|EKL20505.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-61A2]
gi|408852396|gb|EKL92224.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-02C1]
gi|408856489|gb|EKL96184.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-46B1]
gi|408859543|gb|EKL99200.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-55B2]
gi|408863266|gb|EKM02756.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-44C1]
gi|408866896|gb|EKM06267.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-59B1]
gi|443453453|gb|ELT17276.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-78A1]
Length = 247
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 13/239 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P RD + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYI 115
+HG+T +FLK+K ++ ++ + FL+++ +E++ HNA FDVGF+D E + LG + T
Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDF 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSNNIETK-IKIPNN----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L F NS + + +K + + + A+++EL H L + K +G C+W+
Sbjct: 190 LQFSSVTQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLEIVAK--SGTCLWR 246
>gi|224824456|ref|ZP_03697563.1| DNA polymerase III, epsilon subunit [Pseudogulbenkiania
ferrooxidans 2002]
gi|224602949|gb|EEG09125.1| DNA polymerase III, epsilon subunit [Pseudogulbenkiania
ferrooxidans 2002]
Length = 242
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/229 (43%), Positives = 140/229 (61%), Gaps = 2/229 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL GHRIIE +E+ NR++TG +LH YI+P RD + A +HG++
Sbjct: 2 RQIILDTETTGLEPSQGHRIIEFAGLEMVNRKLTGRSLHLYIHPERDIDPDAERVHGISL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K +F+ + +++ ++E+IIHNA FDVGFL+ E +G + + DTL
Sbjct: 62 DFLADKPRFAAVGPEIADFLRDAELIIHNAPFDVGFLNAEFDRIGIERVSTLCASVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+MAR GKRNSLDALCDR+ I + +RTLHG L+D ELL EVYL MTRGQ++L +
Sbjct: 122 VMARDQFPGKRNSLDALCDRFEIDRSNRTLHGALIDCELLGEVYLWMTRGQNSLVMDIDL 181
Query: 183 NNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + PIK+ N+ EL H L +DK G C+W+
Sbjct: 182 DVGGGADLGALEFERKPIKILRPNAEELAAHATYLDDLDKAVKGTCLWR 230
>gi|422350348|ref|ZP_16431234.1| DNA polymerase III, epsilon subunit [Sutterella wadsworthensis
2_1_59BFAA]
gi|404657406|gb|EKB30298.1| DNA polymerase III, epsilon subunit [Sutterella wadsworthensis
2_1_59BFAA]
Length = 283
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 101/230 (43%), Positives = 143/230 (62%), Gaps = 6/230 (2%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQIT---GNNLHYYINPGRDSEKSALAIHGL 60
I LD ETTGL+ G RI+EIGCV + R+I+ + L YINP RD + AIHG+
Sbjct: 46 QITLDTETTGLDPDKGDRILEIGCVRLNGREISLDPDDYLQIYINPERDIPEETTAIHGI 105
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
T + +K+ F++IVD FL++VS++E++IHNA FDVGF++MEL LG Y+ +ITD
Sbjct: 106 TNEKVKDCPVFADIVDEFLDFVSDTELLIHNAKFDVGFINMELERLGRGRLEDYVAQITD 165
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +AR+++ G+R SLD LC + I R HG LLD++LLAEVYL MTRGQ ++
Sbjct: 166 TLEIAREMYPGRRVSLDGLCLMHKIDNSARVFHGALLDSQLLAEVYLTMTRGQGEIDLD- 224
Query: 181 KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N + +E +I + + + EL +H +L K DK C W+K
Sbjct: 225 --NWGDAVEIPPEIIARLTMPEPSPEELAEHEKMLDKADKQCKATCAWRK 272
>gi|229513876|ref|ZP_04403338.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
gi|421351953|ref|ZP_15802318.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-25]
gi|422308174|ref|ZP_16395327.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1035(8)]
gi|229349057|gb|EEO14014.1| DNA polymerase III epsilon subunit [Vibrio cholerae TMA 21]
gi|395952398|gb|EJH63012.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HE-25]
gi|408618039|gb|EKK91128.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1035(8)]
Length = 247
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 13/239 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P RD + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYI 115
+HG+T +FLK+K ++ ++ + FL+++ +E++ HNA FDVGF+D E + LG + T
Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFLDFIKGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDF 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSNNIETK-IKIPNN----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L F NS + + +K + + + A+++EL H L + K +G C+W+
Sbjct: 190 LQFSSVTQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLDIVAK--SGTCLWR 246
>gi|343505396|ref|ZP_08742968.1| DNA polymerase III subunit epsilon [Vibrio ichthyoenteri ATCC
700023]
gi|342807694|gb|EGU42874.1| DNA polymerase III subunit epsilon [Vibrio ichthyoenteri ATCC
700023]
Length = 247
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 153/241 (63%), Gaps = 13/241 (5%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
HR +VLD ETTG+N G HRI+EIG VEI +R++TG + H YI P R+ + A+
Sbjct: 9 QHRIVVLDTETTGMNQDGGPHYLGHRIVEIGAVEIIDRKLTGRHFHVYIKPDREIQAEAV 68
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKY 114
AIHG+T +FL++K ++ ++ FL ++ +E++ HNA FDVGF+D E L S T+
Sbjct: 69 AIHGITDEFLRDKPQYRDVHREFLEFIQGAELVAHNAPFDVGFMDYEFEKLDASIGKTEQ 128
Query: 115 IYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
++TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 YCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 188
Query: 175 NLNFKP-----KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L F P + +I+ ++ + A ++E+ HN L ++K +G C+W+
Sbjct: 189 TLQFNPGSGEGEGVGGESIKRASSQRKSLKVLHATADEIEAHNGRLDIVEK--SGSCLWR 246
Query: 230 K 230
+
Sbjct: 247 Q 247
>gi|377579805|ref|ZP_09808766.1| DNA polymerase III subunit epsilon [Escherichia hermannii NBRC
105704]
gi|377538875|dbj|GAB53931.1| DNA polymerase III subunit epsilon [Escherichia hermannii NBRC
105704]
Length = 243
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH IIEIG VE+ NR++TGNN H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHCIIEIGAVEVINRRLTGNNFHVYIKPDRLVDPDAFMVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL++K F ++VD+F+ Y+ +E+IIHNA+FD+GF+D E + L T +
Sbjct: 67 GIADEFLRDKPVFGDVVDDFIEYIRGAELIIHNASFDIGFMDYEFAKLNRGIPKTDTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +AR++ GKRNSLDALC RY I RTLHG LLD+++LA+V+L MT GQ+++
Sbjct: 127 VTDSLALARRLFPGKRNSLDALCSRYEIDNSKRTLHGALLDSQILADVWLTMTGGQTSMT 186
Query: 178 FKPK-----INNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + ++ I+ ++ + + + A E H L + K G C+W+
Sbjct: 187 FAMEGESQNVQDTTGIQRLVRQASRLKVITATDEECAAHESRLDLVQK-KGGSCLWR 242
>gi|449143588|ref|ZP_21774411.1| DNA polymerase III subunit epsilon [Vibrio mimicus CAIM 602]
gi|449080586|gb|EMB51497.1| DNA polymerase III subunit epsilon [Vibrio mimicus CAIM 602]
Length = 247
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 154/239 (64%), Gaps = 13/239 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P R+ + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYI 115
+HG+T +FL++K ++ ++ D FL+++ +E++ HNA FDVGF+D E + LG S T
Sbjct: 70 VHGITDEFLRDKPEYKDVHDEFLDFIKGAELVAHNAPFDVGFMDYEFAKLGGSVVKTTDF 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSNNIET---KIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
L F NS ++ K +K+ A+++EL H L + K +G C+W+
Sbjct: 190 LQFSAATQNSGELDAESLKRSRSERKALKVLHASADELQAHQDRLDLVAK--SGNCLWR 246
>gi|260581298|ref|ZP_05849115.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
gi|260092047|gb|EEW75993.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae RdAW]
Length = 256
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 151/243 (62%), Gaps = 15/243 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F E+ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185
Query: 179 KPKI-----------NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCI 227
+ + + I++ + +N+ + ++EL H L ++K S C+
Sbjct: 186 EEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNKKSGNNCL 245
Query: 228 WKK 230
W K
Sbjct: 246 WDK 248
>gi|253999157|ref|YP_003051220.1| DNA polymerase III subunit epsilon [Methylovorus glucosetrophus
SIP3-4]
gi|253985836|gb|ACT50693.1| DNA polymerase III, epsilon subunit [Methylovorus glucosetrophus
SIP3-4]
Length = 234
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 145/231 (62%), Gaps = 6/231 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL GHRIIEI VE+ NR+IT + H Y+NP R+ + A +HG+T
Sbjct: 2 RQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPDREIDAGAQEVHGITL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K +F+++V FL++V +SE+IIHNA FDVGFL+ EL + I DTL
Sbjct: 62 EFLQDKPRFADVVGEFLDFVQDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGIIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---NFK 179
MA+++ G+RN+LDALC + I RTLHG LLDAELLA+VYLAMTRGQ +L
Sbjct: 122 KMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRGQESLIIDMLD 181
Query: 180 PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++N +N +I+ + + LA+ E H L + K G C+W++
Sbjct: 182 TPVHNDDNDALQIQAISQ-KVVLADETETAAHQQYLQGLAK--GGACVWQE 229
>gi|373467517|ref|ZP_09558811.1| DNA polymerase III, epsilon subunit [Haemophilus sp. oral taxon 851
str. F0397]
gi|371758238|gb|EHO47011.1| DNA polymerase III, epsilon subunit [Haemophilus sp. oral taxon 851
str. F0397]
Length = 256
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 109/244 (44%), Positives = 151/244 (61%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F E+ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTNDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I++ + +N+ + +EL H +L I+K S C
Sbjct: 185 DEEESVESEVIHVVQEKAAEEIKSAVDFAHNLKLLRPTDDELQAHLELLKMINKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|16272104|ref|NP_438306.1| DNA polymerase III subunit epsilon [Haemophilus influenzae Rd KW20]
gi|1169396|sp|P43745.1|DPO3E_HAEIN RecName: Full=DNA polymerase III subunit epsilon
gi|1573090|gb|AAC21808.1| DNA polymerase III, epsilon subunit (dnaQ) [Haemophilus influenzae
Rd KW20]
Length = 256
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 151/243 (62%), Gaps = 15/243 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F E+ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185
Query: 179 KPKI-----------NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCI 227
+ + + I++ + +N+ + ++EL H L ++K S C+
Sbjct: 186 EEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNKKSGNNCL 245
Query: 228 WKK 230
W K
Sbjct: 246 WDK 248
>gi|261211353|ref|ZP_05925641.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
gi|260839308|gb|EEX65934.1| DNA polymerase III epsilon subunit [Vibrio sp. RC341]
Length = 247
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 152/239 (63%), Gaps = 13/239 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P R+ + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYI 115
+HG+T +FL++K ++ E+ FL+++ +E++ HNA FDVGF+D E + LG S T
Sbjct: 70 VHGITDEFLRDKPEYKEVHAEFLDFIKGAELVAHNAPFDVGFMDYEFAKLGSSIGKTTDF 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSNNIET---KIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
L F NS + K +K+ AN++EL H L + K +G C+W+
Sbjct: 190 LQFSASSQNSGELGAESLKRARSGRKALKVLHANADELQAHQERLDLVAK--SGTCLWR 246
>gi|258627375|ref|ZP_05722159.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
gi|258580413|gb|EEW05378.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM603]
Length = 247
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 154/239 (64%), Gaps = 13/239 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P R+ + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYI 115
+HG+T +FL++K ++ ++ D FL+++ ++E++ HNA FDVGF+D E + LG S T
Sbjct: 70 VHGITDEFLRDKPEYKDVHDEFLDFIKDAELVAHNAPFDVGFMDYEFAKLGGSVVKTTDF 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSNNIET---KIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
L F NS + K +K+ A+++EL H L + K +G C+W+
Sbjct: 190 LQFSAATQNSGELGAESLKRSRSERKALKVLHASADELQAHQDRLDLVAK--SGTCLWR 246
>gi|407793691|ref|ZP_11140723.1| DNA polymerase III subunit epsilon [Idiomarina xiamenensis 10-D-4]
gi|407214390|gb|EKE84238.1| DNA polymerase III subunit epsilon [Idiomarina xiamenensis 10-D-4]
Length = 232
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 101/232 (43%), Positives = 151/232 (65%), Gaps = 7/232 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG++ GHRIIEIGCVE+ NR++TGN+ H YINP R E+ A+ +HG+T
Sbjct: 2 RQVVLDTETTGIDPKQGHRIIEIGCVELVNRRLTGNHYHVYINPERVVEQEAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG--YSNFTKYIYRITD 120
++L +K F++I D+FL+++ +E++IHNA FDVGF++ E L + Y + D
Sbjct: 62 EYLADKPVFAQIADDFLSFIQGAELVIHNAPFDVGFMEHEFQKLNPQFGQVADYC-SVLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +ARK H G++N+LDALC RY++ R LHG LLDAE+LA+VYL MT GQ+ L+
Sbjct: 121 TLQLARKKHPGQKNNLDALCRRYHVDNSSRELHGALLDAEILADVYLLMTGGQTKLDLAS 180
Query: 181 KINNSNNIETKI-KIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
+ T+I +I +K+ A ++E H L+ + + G+C+W+
Sbjct: 181 RQQQQGQRGTEISRIKQRPALKVLAATADEEKAHQQRLALV-AEAGGKCLWQ 231
>gi|313201259|ref|YP_004039917.1| DNA polymerase III subunit epsilon [Methylovorus sp. MP688]
gi|312440575|gb|ADQ84681.1| DNA polymerase III, epsilon subunit [Methylovorus sp. MP688]
Length = 234
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 104/231 (45%), Positives = 146/231 (63%), Gaps = 6/231 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL GHRIIEI VE+ NR+IT + H Y+NP R+ + A +HG+T
Sbjct: 2 RQIFLDTETTGLYPAQGHRIIEIAAVEVINRRITSQHYHVYLNPDREIDAGAQEVHGITL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K +F+++V FL++V +SE+IIHNA FDVGFL+ EL + I DTL
Sbjct: 62 EFLQDKPRFADVVGEFLDFVQDSELIIHNAPFDVGFLNAELGRIEKPGIESVASGIIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---NFK 179
MA+++ G+RN+LDALC + I RTLHG LLDAELLA+VYLAMTRGQ +L
Sbjct: 122 KMAKEMRPGQRNNLDALCRHFGIDNSKRTLHGALLDAELLADVYLAMTRGQESLIIDMLD 181
Query: 180 PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++N +N +I+ ++ + LA+ E H L + K G C+W++
Sbjct: 182 TPVHNDDNDALQIQAISH-KVVLADETETAAHQQYLQGLAK--GGACVWQE 229
>gi|386265504|ref|YP_005828996.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R2846]
gi|309972740|gb|ADO95941.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2846]
Length = 255
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 153/242 (63%), Gaps = 14/242 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG++ + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185
Query: 179 KPKINN----------SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + + + I++ + +N+ + ++EL H L ++K S C+W
Sbjct: 186 EESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMMNKKSGNNCLW 245
Query: 229 KK 230
+K
Sbjct: 246 EK 247
>gi|339494213|ref|YP_004714506.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri ATCC 17588
= LMG 11199]
gi|338801585|gb|AEJ05417.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri ATCC 17588
= LMG 11199]
Length = 241
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 95/201 (47%), Positives = 137/201 (68%), Gaps = 7/201 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K +F +I D F ++ +++++IHNAAFD+GF++ E +LLG + + T D
Sbjct: 62 EFLVDKPRFRDIADEFFEFIKDAQLVIHNAAFDLGFINNEFALLGQQDRAEITDHCTVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLLMAR+ H G+RNSLDALC RY + R LHG LLDAE+LA+V+L MT GQ+NL+
Sbjct: 122 TLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNLSLAG 181
Query: 181 KINNSNNIETKIKIPNNIPIK 201
+S+ P PI+
Sbjct: 182 DGESSDGGR-----PQPSPIR 197
>gi|323498002|ref|ZP_08103011.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
gi|323317047|gb|EGA70049.1| DNA polymerase III subunit epsilon [Vibrio sinaloensis DSM 21326]
Length = 247
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 155/241 (64%), Gaps = 13/241 (5%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
HR IVLD ETTG+N G HRIIEIG VEI NR++TG + H YI P R + A+
Sbjct: 9 QHRIIVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPDRQIQPEAV 68
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKY 114
+HG+T +FL +K ++ ++ FL ++ +E++ HNA FD GF+D E +L T+
Sbjct: 69 LVHGITDEFLVDKPEYQDVHQEFLEFIKGAELVAHNAPFDTGFMDYEFEMLNAQIGKTED 128
Query: 115 IYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 YCKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 188
Query: 175 NLNFKPKINNSNNI--ETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+L F P ++S+ + E+ ++ + + + A+++EL H L ++K +G C+W+
Sbjct: 189 SLQFNPGASDSDAVGGESIKRVASGRKALKVIRASADELEAHQSRLDIVEK--SGSCLWR 246
Query: 230 K 230
+
Sbjct: 247 Q 247
>gi|418465896|ref|ZP_13036828.1| DNA polymerase III subunit epsilon [Aggregatibacter
actinomycetemcomitans RhAA1]
gi|359755394|gb|EHK89558.1| DNA polymerase III subunit epsilon [Aggregatibacter
actinomycetemcomitans RhAA1]
Length = 253
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDTDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K FS++ + F+ Y+ +E++IHNA FDVGF+D E + L T I +
Sbjct: 69 GITDEMLADKPDFSQVANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICLV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+I+ GK+N+LDALC R I RTLHG LLDAE+LA+VYLAMT GQ++L
Sbjct: 129 TDTLTMARQIYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I +++ + +N+ + EL H L I+K S C+W++
Sbjct: 189 ENEPEIIQHAGEQQVQSAVVFSHNLRLLTPTEEELQAHLEYLKLINKKSKDNCLWER 245
>gi|421618040|ref|ZP_16059021.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri KOS6]
gi|409780035|gb|EKN59680.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri KOS6]
Length = 241
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 93/201 (46%), Positives = 139/201 (69%), Gaps = 7/201 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI--YRITD 120
+FL +K +F ++ D F +++ +++++IHNAAFD+GF++ E +LLG + + + D
Sbjct: 62 EFLLDKPRFRDVADEFFDFIKDAQLVIHNAAFDLGFINNEFALLGQQDRAEITDHCSVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLLMAR+ H G+RNSLDALC RY + R LHG LLDAE+LA+V+L MT GQ+NL+
Sbjct: 122 TLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNLSLAG 181
Query: 181 KINNSNNIETKIKIPNNIPIK 201
+ +S+ P PI+
Sbjct: 182 EGESSDGGR-----PQPSPIR 197
>gi|284009180|emb|CBA76234.1| DNA polymerase III subunit epsilon [Arsenophonus nasoniae]
Length = 254
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 10/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG + H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGIHYEGHNIIEIGAVEVINRRLTGRHFHVYIKPARLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F++I D FL+++ +E++IHNA FD+GF+D E S L T +
Sbjct: 67 GISDEFLQDKPTFAQIADEFLDFIRGAELVIHNAPFDIGFMDYEFSKLNRDIPPTANFCQ 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L++ARK+ GKRN+LDALCDRY+I RTLHG LLDAE+LAEVY+AMT GQ++L
Sbjct: 127 ITDSLVLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILAEVYMAMTGGQTSLA 186
Query: 178 F----KPKINNSNNIETKIK-IPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F +P +IK + + AN E+ H L I+K +W+
Sbjct: 187 FSVDSEPGSEVYRGDVKRIKRQATGLSVVYANQEEIAAHEARLDLIEKKGGKISLWR 243
>gi|68248745|ref|YP_247857.1| DNA polymerase III subunit epsilon [Haemophilus influenzae
86-028NP]
gi|68056944|gb|AAX87197.1| DNA polymerase III, epsilon chain [Haemophilus influenzae 86-028NP]
Length = 255
Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 153/242 (63%), Gaps = 14/242 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALC+R I RTLHG LLDAE+LA+VYL MT GQ+NL
Sbjct: 126 TDTLQMARQMYLGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185
Query: 179 KPKINN----------SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + + + I++ + +N+ + ++EL H L ++K S C+W
Sbjct: 186 EESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNKKSGNNCLW 245
Query: 229 KK 230
+K
Sbjct: 246 EK 247
>gi|262170796|ref|ZP_06038474.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
gi|261891872|gb|EEY37858.1| DNA polymerase III epsilon subunit [Vibrio mimicus MB-451]
Length = 247
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 154/239 (64%), Gaps = 13/239 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P R+ + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYI 115
+HG+T +FL++K ++ ++ D FL+++ ++E++ HNA FDVGF+D E + LG S T
Sbjct: 70 VHGITDEFLRDKPEYKDVHDEFLDFIKDAELVAHNAPFDVGFMDYEFAKLGGSVVKTTDF 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNS-----NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L F NS +++ + + A+++EL H L + K +G C+W+
Sbjct: 190 LQFSAATQNSGEQGAESLKRSRSERKALKVLHASADELQAHQDRLDLVAK--SGTCLWR 246
>gi|145635316|ref|ZP_01791019.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
gi|145267460|gb|EDK07461.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittAA]
Length = 255
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 153/242 (63%), Gaps = 14/242 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG++ + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185
Query: 179 KPKINN----------SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + + + I++ + +N+ + ++EL H L ++K S C+W
Sbjct: 186 EESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMMNKKSGNNCLW 245
Query: 229 KK 230
+K
Sbjct: 246 EK 247
>gi|392420969|ref|YP_006457573.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri CCUG
29243]
gi|390983157|gb|AFM33150.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri CCUG
29243]
Length = 241
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 94/206 (45%), Positives = 139/206 (67%), Gaps = 7/206 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI--YRITD 120
+FL +K +F +I D F ++ +++++IHNAAFD+GF++ E +LLG + + D
Sbjct: 62 EFLVDKPRFRDIADEFFEFIKDAQLVIHNAAFDLGFINNEFALLGQQERAEITDHCSVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLLMAR+ H G+RNSLDALC RY + R LHG LLDAE+LA+V+L MT GQ+NL+
Sbjct: 122 TLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNLSLAG 181
Query: 181 KINNSNNIETKIKIPNNIPIKLANSN 206
+S+ P PI+ +++
Sbjct: 182 DGESSDG-----GRPQPTPIRRLSAD 202
>gi|258621021|ref|ZP_05716055.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
gi|262166312|ref|ZP_06034049.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
gi|424807447|ref|ZP_18232855.1| DNA polymerase III, epsilon subunit [Vibrio mimicus SX-4]
gi|258586409|gb|EEW11124.1| DNA polymerase III subunit epsilon [Vibrio mimicus VM573]
gi|262026028|gb|EEY44696.1| DNA polymerase III epsilon subunit [Vibrio mimicus VM223]
gi|342325389|gb|EGU21169.1| DNA polymerase III, epsilon subunit [Vibrio mimicus SX-4]
Length = 247
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 153/239 (64%), Gaps = 13/239 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P R+ + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYI 115
+HG+T +FL++K ++ ++ D FL+++ +E++ HNA FDVGF+D E + LG S T
Sbjct: 70 VHGITDEFLRDKPEYKDVHDEFLDFIKGAELVAHNAPFDVGFMDYEFAKLGGSVVKTTDF 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSNNIET---KIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
L F NS + K +K+ A+++EL H L + K +G C+W+
Sbjct: 190 LQFSAATQNSGELGAESLKRSRSERKALKVLHASADELQAHQDRLDLVAK--SGTCLWR 246
>gi|378696267|ref|YP_005178225.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810]
gi|301168790|emb|CBW28381.1| DNA polymerase III epsilon subunit [Haemophilus influenzae 10810]
Length = 255
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/242 (43%), Positives = 152/242 (62%), Gaps = 14/242 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALC+R I RTLHG LLDAE+LA+VYL MT GQ+NL
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185
Query: 179 KPKINN----------SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + + + I++ + +N+ + ++EL H L ++K S C+W
Sbjct: 186 EESVESEVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNKKSGNNCLW 245
Query: 229 KK 230
K
Sbjct: 246 DK 247
>gi|416052312|ref|ZP_11578205.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
gi|347992227|gb|EGY33643.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype e str. SC1083]
Length = 253
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 149/237 (62%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K FS++ + F+ Y+ +E++IHNA FDVGF+D E + L T I +
Sbjct: 69 GITDEMLADKPDFSQVANEFIAYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICLV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GK+N+LDALC R I RTLHG LLDAE+LA+VYLAMT GQ++L
Sbjct: 129 TDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I +++ + +N+ + EL H L I+K S C+W++
Sbjct: 189 ESEPEIIQHAGEQQVQSAVVFSHNLRLLTPTEEELQAHLEYLKLINKKSKDNCLWER 245
>gi|300724515|ref|YP_003713838.1| DNA polymerase III subunit epsilon [Xenorhabdus nematophila ATCC
19061]
gi|297631055|emb|CBJ91741.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Xenorhabdus nematophila ATCC
19061]
Length = 249
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 152/237 (64%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG + H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHIYIKPERLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F++I D F+ ++ +E+IIHNA FD+GF+D E S L T
Sbjct: 67 GISDEFLQDKPLFADIADEFIEFIRGAELIIHNATFDIGFMDYEFSKLNRDIPPTADFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L++ARK+ GKRN+LDALCDRY+I RTLHG LLDAE+L++VYLAMT GQ++L
Sbjct: 127 ITDSLMLARKLFPGKRNNLDALCDRYHIDNSKRTLHGALLDAEILSDVYLAMTGGQTSLA 186
Query: 178 FKPKINNSNNIET----KIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + S++ KI P + + A+ EL QH L ++K G C+W+
Sbjct: 187 FSMEGEVSSHALVSEIHKITRPQVGLKVIYASDEELTQHESRLDLVEK-KGGSCLWR 242
>gi|397687147|ref|YP_006524466.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 10701]
gi|395808703|gb|AFN78108.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri DSM 10701]
Length = 250
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 136/199 (68%), Gaps = 2/199 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+ ++ A+A+HG+T
Sbjct: 2 RSVVLDTETTGMPVTDGHRIIEIGCVEVIGRKLTGRHYHVYLQPDREVDEGAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI--YRITD 120
+FL +K +F ++ D F ++ +++IIHNAAFD+GF++ E +LLG + + D
Sbjct: 62 EFLVDKPRFRDVADEFFEFIKGAQLIIHNAAFDIGFINNEFALLGQQDRADIADHCSVLD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLLMAR+ H G+RNSLDALC RY + R LHG LLDAE+LA+V+L MT GQ++L+
Sbjct: 122 TLLMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVFLTMTGGQTHLSLAG 181
Query: 181 KINNSNNIETKIKIPNNIP 199
+ ++SN + +P
Sbjct: 182 EGDDSNGGRQQPTAIRRLP 200
>gi|343509204|ref|ZP_08746489.1| DNA polymerase III subunit epsilon [Vibrio scophthalmi LMG 19158]
gi|343513822|ref|ZP_08750917.1| DNA polymerase III subunit epsilon [Vibrio sp. N418]
gi|342801441|gb|EGU36907.1| DNA polymerase III subunit epsilon [Vibrio sp. N418]
gi|342805271|gb|EGU40547.1| DNA polymerase III subunit epsilon [Vibrio scophthalmi LMG 19158]
Length = 247
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 152/241 (63%), Gaps = 13/241 (5%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
HR +VLD ETTG+N G HRI+EIG VEI +R++TG + H YI P R+ + A+
Sbjct: 9 QHRIVVLDTETTGMNQDGGPHYLGHRIVEIGAVEIIDRKLTGRHFHVYIKPDREIQAEAV 68
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKY 114
AIHG+T +FL++K ++ ++ FL ++ +E++ HNA FDVGF+D E L S T+
Sbjct: 69 AIHGITDEFLRDKPEYRDVHREFLEFIQGAELVAHNAPFDVGFMDYEFEKLDASIGNTEQ 128
Query: 115 IYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
++TDTL MA++I GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 YCKVTDTLAMAKRIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 188
Query: 175 NLNFKP-----KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L F P + +I+ + + A ++E+ HN L ++K +G C+W+
Sbjct: 189 TLQFNPGSGDGEGVGGESIKRASSQRKALKVLRATADEIEAHNSRLDIVEK--SGSCLWR 246
Query: 230 K 230
+
Sbjct: 247 Q 247
>gi|15642231|ref|NP_231864.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121586228|ref|ZP_01676018.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
gi|121726541|ref|ZP_01679790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
gi|147674786|ref|YP_001217749.1| DNA polymerase III subunit epsilon [Vibrio cholerae O395]
gi|153213799|ref|ZP_01949007.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
gi|153817083|ref|ZP_01969750.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
gi|153820811|ref|ZP_01973478.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
gi|227082357|ref|YP_002810908.1| DNA polymerase III subunit epsilon [Vibrio cholerae M66-2]
gi|227118679|ref|YP_002820575.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
gi|229507692|ref|ZP_04397197.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
gi|229512113|ref|ZP_04401592.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
gi|229519248|ref|ZP_04408691.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
gi|229607196|ref|YP_002877844.1| DNA polymerase III subunit epsilon [Vibrio cholerae MJ-1236]
gi|254849364|ref|ZP_05238714.1| DNA polymerase III [Vibrio cholerae MO10]
gi|255747069|ref|ZP_05421014.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
gi|262161386|ref|ZP_06030496.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
gi|262167744|ref|ZP_06035446.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
gi|298500392|ref|ZP_07010197.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
gi|360036110|ref|YP_004937873.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 str.
2010EL-1786]
gi|379742038|ref|YP_005334007.1| DNA polymerase III subunit epsilon [Vibrio cholerae IEC224]
gi|417814261|ref|ZP_12460914.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-49A2]
gi|417817998|ref|ZP_12464627.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HCUF01]
gi|418335243|ref|ZP_12944154.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-06A1]
gi|418338852|ref|ZP_12947746.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-23A1]
gi|418346776|ref|ZP_12951534.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-28A1]
gi|418350538|ref|ZP_12955269.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-43A1]
gi|418355397|ref|ZP_12958116.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-61A1]
gi|419827192|ref|ZP_14350691.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1033(6)]
gi|421318306|ref|ZP_15768874.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1032(5)]
gi|421321990|ref|ZP_15772543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1038(11)]
gi|421325792|ref|ZP_15776316.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1041(14)]
gi|421329450|ref|ZP_15779960.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1042(15)]
gi|421333406|ref|ZP_15783883.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1046(19)]
gi|421336948|ref|ZP_15787409.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1048(21)]
gi|421340376|ref|ZP_15790808.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-20A2]
gi|421347824|ref|ZP_15798201.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-46A1]
gi|422897331|ref|ZP_16934775.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-40A1]
gi|422903529|ref|ZP_16938499.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-48A1]
gi|422907414|ref|ZP_16942212.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-70A1]
gi|422914258|ref|ZP_16948763.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HFU-02]
gi|422926462|ref|ZP_16959475.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-38A1]
gi|423145784|ref|ZP_17133378.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-19A1]
gi|423150460|ref|ZP_17137774.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-21A1]
gi|423154279|ref|ZP_17141460.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-22A1]
gi|423157362|ref|ZP_17144455.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-32A1]
gi|423160933|ref|ZP_17147873.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-33A2]
gi|423165760|ref|ZP_17152484.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-48B2]
gi|423731780|ref|ZP_17705083.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-17A1]
gi|423769065|ref|ZP_17713203.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-50A2]
gi|423895927|ref|ZP_17727406.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-62A1]
gi|423931459|ref|ZP_17731799.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-77A1]
gi|424003212|ref|ZP_17746287.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-17A2]
gi|424007003|ref|ZP_17749973.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-37A1]
gi|424024983|ref|ZP_17764633.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-62B1]
gi|424027869|ref|ZP_17767471.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-69A1]
gi|424587149|ref|ZP_18026727.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1030(3)]
gi|424591940|ref|ZP_18031364.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1037(10)]
gi|424595800|ref|ZP_18035119.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1040(13)]
gi|424599714|ref|ZP_18038892.1| DNA polymerase III, epsilon subunit [Vibrio Cholerae CP1044(17)]
gi|424602475|ref|ZP_18041615.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1047(20)]
gi|424607407|ref|ZP_18046348.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1050(23)]
gi|424611226|ref|ZP_18050065.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-39A1]
gi|424614041|ref|ZP_18052826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-41A1]
gi|424618015|ref|ZP_18056686.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-42A1]
gi|424622798|ref|ZP_18061303.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-47A1]
gi|424645762|ref|ZP_18083497.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-56A2]
gi|424653531|ref|ZP_18090911.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-57A2]
gi|440710473|ref|ZP_20891121.1| DNA polymerase III epsilon subunit [Vibrio cholerae 4260B]
gi|443504580|ref|ZP_21071536.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-64A1]
gi|443508481|ref|ZP_21075242.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-65A1]
gi|443512325|ref|ZP_21078960.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-67A1]
gi|443515879|ref|ZP_21082389.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-68A1]
gi|443519673|ref|ZP_21086066.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-71A1]
gi|443524564|ref|ZP_21090774.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-72A2]
gi|443532158|ref|ZP_21098172.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-7A1]
gi|443535966|ref|ZP_21101837.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-80A1]
gi|443539499|ref|ZP_21105353.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-81A1]
gi|449055309|ref|ZP_21733977.1| DNA polymerase III epsilon subunit [Vibrio cholerae O1 str. Inaba
G4222]
gi|9656792|gb|AAF95377.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O1 biovar El
Tor str. N16961]
gi|121549494|gb|EAX59520.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 2740-80]
gi|121630994|gb|EAX63373.1| DNA polymerase III, epsilon subunit [Vibrio cholerae V52]
gi|124115723|gb|EAY34543.1| DNA polymerase III, epsilon subunit [Vibrio cholerae 1587]
gi|126512351|gb|EAZ74945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae NCTC 8457]
gi|126521603|gb|EAZ78826.1| DNA polymerase III, epsilon subunit [Vibrio cholerae B33]
gi|146316669|gb|ABQ21208.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
gi|227010245|gb|ACP06457.1| DNA polymerase III, epsilon subunit [Vibrio cholerae M66-2]
gi|227014129|gb|ACP10339.1| DNA polymerase III, epsilon subunit [Vibrio cholerae O395]
gi|229343937|gb|EEO08912.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC9]
gi|229352078|gb|EEO17019.1| DNA polymerase III epsilon subunit [Vibrio cholerae B33]
gi|229355197|gb|EEO20118.1| DNA polymerase III epsilon subunit [Vibrio cholerae BX 330286]
gi|229369851|gb|ACQ60274.1| DNA polymerase III epsilon subunit [Vibrio cholerae MJ-1236]
gi|254845069|gb|EET23483.1| DNA polymerase III [Vibrio cholerae MO10]
gi|255735471|gb|EET90871.1| DNA polymerase III epsilon subunit [Vibrio cholera CIRS 101]
gi|262023809|gb|EEY42508.1| DNA polymerase III epsilon subunit [Vibrio cholerae RC27]
gi|262028697|gb|EEY47351.1| DNA polymerase III epsilon subunit [Vibrio cholerae INDRE 91/1]
gi|297541085|gb|EFH77139.1| DNA polymerase III, epsilon subunit [Vibrio cholerae MAK 757]
gi|340036747|gb|EGQ97723.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-49A2]
gi|340037721|gb|EGQ98696.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HCUF01]
gi|341620469|gb|EGS46240.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-48A1]
gi|341620605|gb|EGS46372.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-70A1]
gi|341621214|gb|EGS46961.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-40A1]
gi|341636500|gb|EGS61195.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HFU-02]
gi|341645852|gb|EGS69976.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-38A1]
gi|356416619|gb|EHH70244.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-06A1]
gi|356417782|gb|EHH71395.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-21A1]
gi|356422622|gb|EHH76096.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-19A1]
gi|356427971|gb|EHH81202.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-22A1]
gi|356430494|gb|EHH83703.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-23A1]
gi|356431760|gb|EHH84960.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-28A1]
gi|356439252|gb|EHH92239.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-32A1]
gi|356444210|gb|EHH97022.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-33A2]
gi|356445034|gb|EHH97843.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-43A1]
gi|356450261|gb|EHI02991.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-48B2]
gi|356451895|gb|EHI04574.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-61A1]
gi|356647264|gb|AET27319.1| DNA polymerase III subunit epsilon [Vibrio cholerae O1 str.
2010EL-1786]
gi|378795548|gb|AFC59019.1| DNA polymerase III subunit epsilon [Vibrio cholerae IEC224]
gi|395916564|gb|EJH27394.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1032(5)]
gi|395917630|gb|EJH28458.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1041(14)]
gi|395918984|gb|EJH29808.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1038(11)]
gi|395927984|gb|EJH38747.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1042(15)]
gi|395928808|gb|EJH39561.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1046(19)]
gi|395932047|gb|EJH42791.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1048(21)]
gi|395939659|gb|EJH50341.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-20A2]
gi|395942403|gb|EJH53079.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-46A1]
gi|395958300|gb|EJH68796.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-56A2]
gi|395958821|gb|EJH69285.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-57A2]
gi|395961491|gb|EJH71815.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-42A1]
gi|395970446|gb|EJH80211.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-47A1]
gi|395972497|gb|EJH82087.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1030(3)]
gi|395975153|gb|EJH84650.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1047(20)]
gi|408006577|gb|EKG44715.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-39A1]
gi|408011964|gb|EKG49762.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-41A1]
gi|408030118|gb|EKG66795.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1037(10)]
gi|408031358|gb|EKG67988.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1040(13)]
gi|408041071|gb|EKG77211.1| DNA polymerase III, epsilon subunit [Vibrio Cholerae CP1044(17)]
gi|408042514|gb|EKG78563.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1050(23)]
gi|408607982|gb|EKK81385.1| DNA polymerase III, epsilon subunit [Vibrio cholerae CP1033(6)]
gi|408622823|gb|EKK95790.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-17A1]
gi|408633342|gb|EKL05703.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-50A2]
gi|408653686|gb|EKL24841.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-77A1]
gi|408654629|gb|EKL25764.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-62A1]
gi|408844857|gb|EKL84980.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-37A1]
gi|408845746|gb|EKL85861.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-17A2]
gi|408869843|gb|EKM09130.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-62B1]
gi|408878492|gb|EKM17493.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-69A1]
gi|439973802|gb|ELP50006.1| DNA polymerase III epsilon subunit [Vibrio cholerae 4260B]
gi|443431051|gb|ELS73605.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-64A1]
gi|443434889|gb|ELS81035.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-65A1]
gi|443438713|gb|ELS88431.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-67A1]
gi|443442816|gb|ELS96119.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-68A1]
gi|443446672|gb|ELT03331.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-71A1]
gi|443449422|gb|ELT09716.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-72A2]
gi|443457548|gb|ELT24945.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-7A1]
gi|443460856|gb|ELT31936.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-80A1]
gi|443465599|gb|ELT40259.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-81A1]
gi|448265351|gb|EMB02586.1| DNA polymerase III epsilon subunit [Vibrio cholerae O1 str. Inaba
G4222]
Length = 247
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 155/239 (64%), Gaps = 13/239 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P RD + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYI 115
+HG+T +FLK+K ++ ++ + F++++ +E++ HNA FDVGF+D E + LG + T
Sbjct: 70 VHGITDEFLKDKPEYKDVHEEFVDFIKGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDF 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSNNIETK-IKIPNN----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L F NS + + +K + + + A+++EL H L + K +G C+W+
Sbjct: 190 LQFSSVTQNSGELSAESLKRARSERKALKVLAASADELQAHQDRLDIVAK--SGTCLWR 246
>gi|336451985|ref|ZP_08622418.1| DNA polymerase III, epsilon subunit [Idiomarina sp. A28L]
gi|336281032|gb|EGN74316.1| DNA polymerase III, epsilon subunit [Idiomarina sp. A28L]
Length = 256
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 148/233 (63%), Gaps = 7/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ GHR+IEIGCVE+ R++TGN+ H Y+NP R E+ A+ IHG+T
Sbjct: 18 RQIVLDTETTGIDPAQGHRVIEIGCVEMIGRKLTGNHFHVYLNPERFVEEDAIRIHGITN 77
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFT-KYIYRITDT 121
+FL +K F+++VD+FL ++ +SE++IHNA FDVGFL+ EL LLG + T + + DT
Sbjct: 78 EFLVDKPVFAQVVDDFLAFIKDSELVIHNAPFDVGFLNNELRLLGSQHGTVTDVASVFDT 137
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL----- 176
L AR+ G+RNSLDALC R+++ HRTLHG LLDAE+LA+VYL MT GQ L
Sbjct: 138 LSFARQQFPGQRNSLDALCKRFDVENGHRTLHGALLDAEILADVYLLMTGGQRKLFQPAQ 197
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ I + + A+++E H + I + S G+ +W+
Sbjct: 198 AQQTAAGREQEIRRLASARAALKVITASADEKAAHETYMQGIQEES-GKRLWE 249
>gi|417840525|ref|ZP_12486656.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M19107]
gi|341948021|gb|EGT74659.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M19107]
Length = 256
Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 109/244 (44%), Positives = 152/244 (62%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F E+ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTNDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KPKINNS------------NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I++ + +N+ + ++EL H +L I+K S C
Sbjct: 185 DEEESVESEVIHVVQEKAVEEIKSAVDFAHNLKLLQPTNDELQAHLELLKMINKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|319775991|ref|YP_004138479.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3047]
gi|329123857|ref|ZP_08252414.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
aegyptius ATCC 11116]
gi|317450582|emb|CBY86799.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3047]
gi|327468820|gb|EGF14294.1| DNA-directed DNA polymerase III epsilon subunit [Haemophilus
aegyptius ATCC 11116]
Length = 256
Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 152/244 (62%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG++ + +GHRIIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMSQLGAHYEGHRIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFHKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I++ + +N+ + ++EL H L ++K S C
Sbjct: 185 DEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMMNKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|417844960|ref|ZP_12490996.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21639]
gi|341956161|gb|EGT82600.1| DNA polymerase III subunit epsilon [Haemophilus haemolyticus
M21639]
Length = 256
Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 108/244 (44%), Positives = 150/244 (61%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTNDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 K------------PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I+ + +N+ + +EL H +L I+K S C
Sbjct: 185 DEEESVESEVIHVEQEKTAEEIKNAVDFAHNLKLLQPTDDELQAHLELLKMINKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|347538900|ref|YP_004846324.1| DNA polymerase III subunit epsilon [Pseudogulbenkiania sp. NH8B]
gi|345642077|dbj|BAK75910.1| DNA polymerase III, epsilon subunit [Pseudogulbenkiania sp. NH8B]
Length = 242
Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 99/229 (43%), Positives = 139/229 (60%), Gaps = 2/229 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL GHRIIE +E+ NR++TG +LH YI+P RD + A +HG++
Sbjct: 2 RQIILDTETTGLEPSQGHRIIEFAGLEMVNRKLTGRSLHLYIHPERDIDPDAERVHGISL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K +F+ + +++ ++E+IIHNA FDVGFL+ E +G + + DTL
Sbjct: 62 DFLADKPRFAAVGPEIADFLRDAELIIHNAPFDVGFLNAEFDRIGVERVSTLCASVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+MAR GKRNSLDALCDR+ I + +RTLHG L+D ELL EVYL MTRGQ++L +
Sbjct: 122 VMARDQFPGKRNSLDALCDRFEIDRSNRTLHGALIDCELLGEVYLWMTRGQNSLVMDIDL 181
Query: 183 NNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + PI + N+ EL H L +DK G C+W+
Sbjct: 182 DVGGGADLGALEFERKPITILRPNAEELAAHATYLDDLDKAVKGTCLWR 230
>gi|59712542|ref|YP_205318.1| DNA polymerase III subunit epsilon [Vibrio fischeri ES114]
gi|59480643|gb|AAW86430.1| DNA polymerase III epsilon subunit [Vibrio fischeri ES114]
Length = 243
Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 111/237 (46%), Positives = 153/237 (64%), Gaps = 14/237 (5%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IVLD ETTG+N + +GHRI+EIG VEI NR++TGN+ H YI P R + A+ +
Sbjct: 10 RIIVLDTETTGMNFSGGPVYEGHRIVEIGAVEIINRKLTGNHFHVYIKPDRLIDLEAIDV 69
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY- 116
HG+T +FL +K ++ +I D FL ++ +E++ HNA FDVGF+D E S L T Y
Sbjct: 70 HGITDEFLYDKPEYKDIHDEFLEFIKGAELVAHNAPFDVGFMDYEFSKLNKLIGTTDQYC 129
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 130 KITDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 189
Query: 177 NFKPKINNSNNIETKIKIPNN----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+F N+S++ E IK N+ + + A ++EL H L + C+W+
Sbjct: 190 SFSSGENSSDSDEETIKRLNSGRKGLKVLRATADELEAHEKRLDIV----GDACLWR 242
>gi|262404569|ref|ZP_06081124.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
gi|262349601|gb|EEY98739.1| DNA polymerase III epsilon subunit [Vibrio sp. RC586]
Length = 247
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 13/239 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P R+ + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYI 115
+HG+T +FL++K ++ ++ + FL+++ +E++ HNA FDVGF+D E + LG S T
Sbjct: 70 VHGITDEFLRDKPEYKQVHEEFLDFIKGAELVAHNAPFDVGFMDYEFAKLGGSVIKTTDF 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSN--NIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
L F NS N E+ + + + + A+++EL H L + K +G C+W+
Sbjct: 190 LQFSASTQNSGELNAESLKRARSERKALKVLHASADELQAHQERLDLVAK--SGTCLWR 246
>gi|344942486|ref|ZP_08781773.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
SV96]
gi|344259773|gb|EGW20045.1| DNA polymerase III, epsilon subunit [Methylobacter tundripaludum
SV96]
Length = 241
Score = 203 bits (516), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 109/234 (46%), Positives = 149/234 (63%), Gaps = 7/234 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGLN +GHRIIEIGCVE+ NR++TG H YINP R + A+ +HG+T
Sbjct: 9 RLVVLDTETTGLNPQEGHRIIEIGCVELVNRRLTGKRFHTYINPERIIDDGAIEVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RITDT 121
+FL++K F+++V +F+ ++ ++E++IHNA FDVGF++ E S L T Y ++ DT
Sbjct: 69 QFLEDKPCFADVVKDFIAFIQDAELVIHNAPFDVGFINYEFSRLNSQTGTVTDYSKVFDT 128
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L ARK H G+RNSLDALC RY I HR LHG LLDAE+LA+V+L MT GQS+L + +
Sbjct: 129 LTYARKKHPGQRNSLDALCKRYGIDNSHRDLHGALLDAEILADVFLLMTGGQSSLLDEGQ 188
Query: 182 INNSN---NIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
N E K + +K+ EL H L I+K + G CIW +
Sbjct: 189 GRQEGAAVNREIKHLSADRPALKIIRCTEEELNAHQQRLEAIEK-AGGGCIWNQ 241
>gi|392954387|ref|ZP_10319938.1| DNA polymerase III subunit epsilon [Hydrocarboniphaga effusa AP103]
gi|391857044|gb|EIT67575.1| DNA polymerase III subunit epsilon [Hydrocarboniphaga effusa AP103]
Length = 243
Score = 202 bits (515), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 139/233 (59%), Gaps = 7/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPG-RDSEKSALAIHGLT 61
R IVLD ETTGL +I GHR+IEIGCVE+ NR+ T N+ H YI+P +D + A +HG++
Sbjct: 2 RQIVLDTETTGLEVIQGHRVIEIGCVELVNRRPTNNDFHRYIHPDDKDIDPGAEQVHGIS 61
Query: 62 TKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDT 121
FL +K KF E+ +Y++ SE++IHNAAFD+GFLD E LG + + + DT
Sbjct: 62 MAFLADKPKFVELGRELWDYLAGSELVIHNAAFDIGFLDAEFQRLGINRKLSEVCSVVDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
+ +AR++H G++ +LDALC RY + HR HG LLDA LLA+VYLAMT GQS L
Sbjct: 122 VALARRLHPGQKVNLDALCRRYAVDASHRDFHGALLDARLLADVYLAMTGGQSALGLDDS 181
Query: 182 I------NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
S +E I + + NE H L IDK S G+ IW
Sbjct: 182 SAQAGAQRRSRFVELLGAIEAPLRVIRVGENEQAAHLDRLKTIDKKSGGKLIW 234
>gi|444378121|ref|ZP_21177326.1| DNA polymerase III epsilon subunit [Enterovibrio sp. AK16]
gi|443677923|gb|ELT84599.1| DNA polymerase III epsilon subunit [Enterovibrio sp. AK16]
Length = 247
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 108/242 (44%), Positives = 151/242 (62%), Gaps = 19/242 (7%)
Query: 3 RHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IVLD ETTG+N +GHRIIEIG VEI NR++TG + H YI P R+ + A+++
Sbjct: 7 RIIVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYIKPDREIDPEAISV 66
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL++K ++ +I FL ++ +E++ HNA FD GF+D E + S T
Sbjct: 67 HGITDEFLRDKPEYGDIHAEFLEFIKGAELVAHNAPFDTGFMDYEFQMQDPSIGKTDDFC 126
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 127 KVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTTL 186
Query: 177 NFKPKINNSNN--------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
F +N +E K + I A+++EL +H L I+K NG C+W
Sbjct: 187 KFSGSDSNEEGGGGEAIRRVEAGTK---KLKIISASADELSEHEKQLDIIEK--NGSCLW 241
Query: 229 KK 230
++
Sbjct: 242 RQ 243
>gi|289664175|ref|ZP_06485756.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
vasculorum NCPPB 702]
gi|289668767|ref|ZP_06489842.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
musacearum NCPPB 4381]
Length = 244
Score = 202 bits (515), Expect = 7e-50, Method: Compositional matrix adjust.
Identities = 105/236 (44%), Positives = 150/236 (63%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +GNN H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F E+VD FL Y+ +E+IIHNAAFD+GFLD ELSLLG N+ + + R T D
Sbjct: 62 EFLADKPLFGEVVDEFLAYIDGAELIIHNAAFDLGFLDNELSLLG-DNYGRIVERATVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIGFAS 180
Query: 181 -----KINNSNNI---ETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ N+++ + + + +P P ++E H L+++ K + GR +W
Sbjct: 181 ADAGQQTNSASGMIAFDPALLLPR--PRVAVTASESQAHEARLAQLRKKA-GRALW 233
>gi|261868455|ref|YP_003256377.1| DNA polymerase III subunit epsilon [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|415768235|ref|ZP_11483574.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|444346215|ref|ZP_21154187.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
gi|261413787|gb|ACX83158.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans D11S-1]
gi|348658189|gb|EGY75765.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans D17P-2]
gi|443541950|gb|ELT52336.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype c str. AAS4A]
Length = 253
Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 149/237 (62%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K FS++ + F+ Y+ +E++IHNA FDVGF+D E + L T I +
Sbjct: 69 GITDEMLADKPDFSQVANQFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICLV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GK+N+LDALC R I RTLHG LLDA++LA+VYLAMT GQ++L
Sbjct: 129 TDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDADILADVYLAMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I +++ + +N+ + EL H L I+K S C+W++
Sbjct: 189 ESEPEIIQHAGEQQVQSTVVFSHNLRLLTPTEEELQAHLEYLKLINKKSKDNCLWER 245
>gi|343500520|ref|ZP_08738412.1| DNA polymerase III subunit epsilon [Vibrio tubiashii ATCC 19109]
gi|418477289|ref|ZP_13046422.1| DNA polymerase III subunit epsilon [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
gi|342820236|gb|EGU55062.1| DNA polymerase III subunit epsilon [Vibrio tubiashii ATCC 19109]
gi|384575029|gb|EIF05483.1| DNA polymerase III subunit epsilon [Vibrio tubiashii NCIMB 1337 =
ATCC 19106]
Length = 245
Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 150/239 (62%), Gaps = 11/239 (4%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
HR +VLD ETTG+N G HRIIEIG VEI +R++TG + H YI P RD + A+
Sbjct: 9 QHRIVVLDTETTGMNREGGPHYQDHRIIEIGAVEIIDRKLTGRHFHVYIKPDRDIQPDAV 68
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI 115
+HG+T +FL +K ++ ++ FL ++ ++E++ HNA FDVGF+D E +L
Sbjct: 69 EVHGITDEFLVDKPEYQDVHAEFLEFIKDAELVAHNAPFDVGFMDYEFGMLDPQIGKTVD 128
Query: 116 Y-RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
Y ++TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 YCKVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 188
Query: 175 NLNFKPKINNSNNIETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+L F N E + + + I A+++E+ H L ++K +G C+W++
Sbjct: 189 SLQFNAGNGNEEGGEAIKRAASGRKALKILRASADEIEAHQSRLDIVEK--SGSCLWRQ 245
>gi|262276480|ref|ZP_06054289.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
gi|262220288|gb|EEY71604.1| DNA polymerase III epsilon subunit [Grimontia hollisae CIP 101886]
Length = 247
Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 152/242 (62%), Gaps = 19/242 (7%)
Query: 3 RHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IVLD ETTG+N +GHRIIEIG VEI NR++TG + H YI P R+ + A+++
Sbjct: 7 RIIVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYIKPDREIDPEAISV 66
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL++K +++I FL ++ +E++ HNA FD GF+D E +L S T
Sbjct: 67 HGITDEFLRDKPSYADIHAEFLEFIKGAELVAHNAPFDTGFMDHEFQMLDPSIGKTGDFC 126
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 127 KVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTTL 186
Query: 177 NFKPKINNSNN--------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
F ++ + +E K + I A+++EL +H L I+K G C+W
Sbjct: 187 KFGGSESSDQDSGGEAIRRVEAGTK---KLKIIRASADELKEHEAQLDVIEK--KGSCLW 241
Query: 229 KK 230
++
Sbjct: 242 RQ 243
>gi|365968241|ref|YP_004949803.1| DNA polymerase III subunit epsilon [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|416075683|ref|ZP_11585137.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|444344787|ref|ZP_21152977.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|444349272|ref|ZP_21156762.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
gi|348005912|gb|EGY46379.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype b str. SCC1398]
gi|365747154|gb|AEW78059.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans ANH9381]
gi|443543378|gb|ELT53623.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype b str. SCC4092]
gi|443545011|gb|ELT54882.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype b str. S23A]
Length = 253
Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 148/237 (62%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K FS+ + F+ Y+ +E++IHNA FDVGF+D E + L T I +
Sbjct: 69 GITDEMLADKPDFSQAANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICLV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GK+N+LDALC R I RTLHG LLDAE+LA+VYLAMT GQ++L
Sbjct: 129 TDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I +++ + +N+ + EL H L I+K S C+W++
Sbjct: 189 ESEPEIIQHAGEQQVQSAVVFSHNLRLLTPTEEELQAHLEYLKLINKKSKDNCLWER 245
>gi|443702652|gb|ELU00575.1| hypothetical protein CAPTEDRAFT_101314 [Capitella teleta]
Length = 239
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 110/235 (46%), Positives = 150/235 (63%), Gaps = 11/235 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG++ GHRIIEIGCVE+ R++TGN+ H YINP R E+ A+A+HG+T
Sbjct: 2 RQIILDTETTGIDPKQGHRIIEIGCVEMIGRKLTGNHYHVYINPQRIVEQEAIAVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--IYRITD 120
+ L +K FS I D FL ++ +E++IHNA FD GF++ E +LL F K + D
Sbjct: 62 EDLADKPVFSAIADEFLEFIRGAELVIHNAPFDTGFINHEFALL-RRGFPKVEDCCGVLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +ARK H G++N+LDALC RY I RTLHG LLDAE+LAEVYL MT GQ+ L+
Sbjct: 121 TLALARKKHPGQKNNLDALCKRYFIDNSSRTLHGALLDAEILAEVYLVMTGGQTALSLSN 180
Query: 181 KINNSNNIE---TKI-KIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + + E +KI ++ + P + A+ EL H L +I K S G C+W
Sbjct: 181 SEDGAEDSEEGGSKIRRLASTRPELRVITASEVELQNHQTKLEQIQKQS-GNCLW 234
>gi|387120294|ref|YP_006286177.1| DNA polymerase III subunit epsilon [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|415757428|ref|ZP_11481332.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|416039498|ref|ZP_11574340.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|416043565|ref|ZP_11574629.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|416063641|ref|ZP_11581607.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|416069154|ref|ZP_11583141.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|429734369|ref|ZP_19268391.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans Y4]
gi|444334636|ref|ZP_21150121.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
gi|347994398|gb|EGY35687.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype a str. H5P1]
gi|347996383|gb|EGY37469.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype e str. SCC393]
gi|347997066|gb|EGY38096.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype d str. I63B]
gi|348000369|gb|EGY41155.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype f str. D18P1]
gi|348655527|gb|EGY70978.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans D17P-3]
gi|385874786|gb|AFI86345.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans D7S-1]
gi|429152177|gb|EKX95009.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans Y4]
gi|443550127|gb|ELT58583.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype a str. A160]
Length = 253
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 148/237 (62%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K FS+ + F+ Y+ +E++IHNA FDVGF+D E + L T I +
Sbjct: 69 GITDEMLADKPDFSQAANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICLV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GK+N+LDALC R I RTLHG LLDAE+LA+VYLAMT GQ++L
Sbjct: 129 TDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I +++ + +N+ + EL H L I+K S C+W++
Sbjct: 189 ESEPEIIQHAGEQQVQSAVVFSHNLRLLTPTEEELQAHLEYLKLINKKSRDNCLWER 245
>gi|145637904|ref|ZP_01793548.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
gi|145268904|gb|EDK08863.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittHH]
Length = 256
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 152/244 (62%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG++ + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F E+ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I++ + +N+ + ++EL H +L ++K S C
Sbjct: 185 DEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLNKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|242240256|ref|YP_002988437.1| DNA polymerase III subunit epsilon [Dickeya dadantii Ech703]
gi|242132313|gb|ACS86615.1| DNA polymerase III, epsilon subunit [Dickeya dadantii Ech703]
Length = 244
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 150/238 (63%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG+N + +GHRIIEIG VE+ NR++TG + H Y+ P R + A IH
Sbjct: 7 RQVVLDTETTGMNRLGVHYEGHRIIEIGAVEVINRRLTGRHYHVYLKPDRLVDPEAFQIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL ++ +++IVD F+ ++ +E++IHNA+FD+GF+D E +L T+ +
Sbjct: 67 GISDEFLIDRPAYADIVDEFIEFIRGAELVIHNASFDIGFMDYEFRMLNRDIPKTETFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MAR++ GKRN+LD LC RY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLAMARRLFPGKRNNLDVLCTRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLA 186
Query: 178 FKPKINNSNN------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ + + + + AN +EL+ H L + K G C+W+
Sbjct: 187 FSSDSEGTQQAVVAEAIQRIARPASALKVIHANDDELMAHEQRLDLVMK-KGGSCLWR 243
>gi|420389544|ref|ZP_14888817.1| DNA polymerase III, epsilon subunit [Escherichia coli EPEC C342-62]
gi|391315089|gb|EIQ72622.1| DNA polymerase III, epsilon subunit [Escherichia coli EPEC C342-62]
Length = 226
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 138/218 (63%), Gaps = 7/218 (3%)
Query: 18 DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDN 77
+GH+IIEIG VE+ NR++TGNN H Y+ P R + A +HG+ +FL +K F+E+ D
Sbjct: 9 EGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADE 68
Query: 78 FLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDTLLMARKIHTGKRNSL 136
F++Y+ +E++IHNAAFD+GF+D E SLL T ++TD+L +ARK+ GKRNSL
Sbjct: 69 FMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSL 128
Query: 137 DALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK-----PKINNSNNIETK 191
DALC RY I RTLHG LLDA++LAEVYLAMT GQ+++ F + I+
Sbjct: 129 DALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGEATIQRI 188
Query: 192 IKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ + + + A EL H L ++K G C+W+
Sbjct: 189 VRQASKLRVVFATDEELAAHEARLDLVEK-KGGSCLWR 225
>gi|307132179|ref|YP_003884195.1| DNA polymerase III subunit epsilon [Dickeya dadantii 3937]
gi|306529708|gb|ADM99638.1| DNA polymerase III epsilon subunit [Dickeya dadantii 3937]
Length = 244
Score = 202 bits (514), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 106/238 (44%), Positives = 150/238 (63%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG + H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYLRPDRLVDPEAYNVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K + ++VD+FL+++ +E++IHNA FD+GF+D E LL T+
Sbjct: 67 GISDEFLADKPTYGDVVDDFLDFIRGAELVIHNATFDIGFMDYEFRLLKRDIPKTETFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MAR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L
Sbjct: 127 ITDSLQMARRLFPGKRNNLDALCDRYQIDNSKRTLHGALLDAEILAEVYLAMTGGQTSLA 186
Query: 178 FKPKIN-----NSNNIETKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + +I P + + + A+ EL H L I K G C+W+
Sbjct: 187 FSMEGDTQQQTAQTETIQRIARPASALAVLYASDEELAAHEQRLDLIMK-KGGSCLWR 243
>gi|145628970|ref|ZP_01784769.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
gi|144978473|gb|EDJ88196.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.1-21]
Length = 256
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 152/244 (62%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I++ + +N+ + ++EL H +L ++K S C
Sbjct: 185 DEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLNKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|419168230|ref|ZP_13712628.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7A]
gi|378018636|gb|EHV81482.1| DNA polymerase III, epsilon subunit [Escherichia coli DEC7A]
Length = 226
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/218 (44%), Positives = 138/218 (63%), Gaps = 7/218 (3%)
Query: 18 DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDN 77
+GH+IIEIG VE+ NR++TGNN H Y+ P R + A +HG+ +FL +K F+E+ D
Sbjct: 9 EGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFAEVADE 68
Query: 78 FLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDTLLMARKIHTGKRNSL 136
F++Y+ +E++IHNAAFD+GF+D E SLL T ++TD+L +ARK+ GKRNSL
Sbjct: 69 FMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCKVTDSLAVARKMFPGKRNSL 128
Query: 137 DALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK-----PKINNSNNIETK 191
DALC RY I RTLHG LLDA++LAEVYLAMT GQ+++ F + I+
Sbjct: 129 DALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMAFAMEGETQQQQGEATIQRI 188
Query: 192 IKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ + + + A +EL H L + K G C+W+
Sbjct: 189 VRQASKLRVVFATDDELAAHEARLDLVQK-KGGSCLWR 225
>gi|319898105|ref|YP_004136302.1| DNA polymerase III subunit epsilon [Haemophilus influenzae F3031]
gi|317433611|emb|CBY81995.1| DNA polymerase III epsilon subunit [Haemophilus influenzae F3031]
Length = 256
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 151/244 (61%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I++ + +N+ + ++EL H L ++K S C
Sbjct: 185 DEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLIQPTNDELQAHLEFLKMMNKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|148825595|ref|YP_001290348.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
gi|229847255|ref|ZP_04467358.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
gi|148715755|gb|ABQ97965.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittEE]
gi|229809798|gb|EEP45521.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 7P49H1]
Length = 256
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 152/244 (62%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I++ + +N+ + ++EL H +L ++K S C
Sbjct: 185 DEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLNKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|323495336|ref|ZP_08100414.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
gi|323310407|gb|EGA63593.1| DNA polymerase III subunit epsilon [Vibrio brasiliensis LMG 20546]
Length = 245
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 152/239 (63%), Gaps = 11/239 (4%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
HR +VLD ETTG+N G HRIIEIG VEI NR++TG + H YI P R+ + A+
Sbjct: 9 QHRIVVLDTETTGMNREGGPHYQDHRIIEIGAVEIINRKLTGRHFHVYIKPDREIQPDAV 68
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI 115
+HG+T +FL +K + ++ FL ++ +E++ HNA FDVGF+D E +L S
Sbjct: 69 EVHGITDEFLVDKPDYRDVHAEFLEFIKGAELVAHNAPFDVGFMDHEFGMLDPSIGKTVD 128
Query: 116 Y-RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
Y ++TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 YCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 188
Query: 175 NLNFKPKINNSNNIETKIKIPN---NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+L F ++ + E ++ + ++ + A ++EL H L ++K +G C+W++
Sbjct: 189 SLQFNAGNSSEDGGEAIKRVASGRKSLKVLRATADELEAHQSRLDIVEK--SGSCLWRQ 245
>gi|309750446|gb|ADO80430.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae R2866]
Length = 256
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 107/244 (43%), Positives = 152/244 (62%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG++ + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F E+ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I++ + +N+ + ++EL H +L ++K S C
Sbjct: 185 DEEESVESEVIRVVQEKAAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLNKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|383188896|ref|YP_005199024.1| DNA polymerase III subunit epsilon [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
gi|371587154|gb|AEX50884.1| DNA polymerase III, epsilon subunit [Rahnella aquatilis CIP 78.65 =
ATCC 33071]
Length = 245
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 147/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG+N + +GHRIIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 9 RIVVLDTETTGMNKLGVHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPDRLVDPEAFGVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I D+F+ Y+ E++IHNA FD+GF+D E +LG T+ +
Sbjct: 69 GISDEFLADKPTFADIADDFIEYIRGGELVIHNATFDIGFMDYEFGMLGRDLPKTETFCK 128
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MARK+ GKRN+LDAL DRY I RTLHG LLD+E+LAEVYL MT GQ+++
Sbjct: 129 ITDSLAMARKLFPGKRNNLDALSDRYLIDNSKRTLHGALLDSEILAEVYLMMTGGQTSIK 188
Query: 178 FKPKINNSN-----NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ + + + + A EL H L + K G C+W+
Sbjct: 189 FTHEGEQNTGADGLGIQRVARPASGLKVIAATEQELAWHEERLDLVVK-KGGSCLWR 244
>gi|238762660|ref|ZP_04623629.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC
33638]
gi|238698965|gb|EEP91713.1| DNA polymerase III subunit epsilon [Yersinia kristensenii ATCC
33638]
Length = 259
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 98/190 (51%), Positives = 133/190 (70%), Gaps = 5/190 (2%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH+IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 12 RQIVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAYGVH 71
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I FL ++ +E++IHNAAFD+GF+D E +L T+
Sbjct: 72 GISDEFLADKPTFADIASEFLEFIRGAELVIHNAAFDIGFMDYEFRMLQQDIPKTETFCT 131
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+LL+AR++ GKRN+LDALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L+
Sbjct: 132 ITDSLLLARRLFPGKRNNLDALCDRYLIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLS 191
Query: 178 FKPKINNSNN 187
F + + S N
Sbjct: 192 FSMEGDQSQN 201
>gi|335424999|ref|ZP_08553990.1| DNA polymerase III subunit epsilon [Salinisphaera shabanensis
E1L3A]
gi|334886675|gb|EGM25022.1| DNA polymerase III subunit epsilon [Salinisphaera shabanensis
E1L3A]
Length = 241
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 147/235 (62%), Gaps = 8/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL GHRIIE+GCVE+ NR++TGN+LH YI+P R+ ++ A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEPAQGHRIIEVGCVELANRRLTGNDLHLYIHPDREIDQGAIDVHGITL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFT-KYIYRITDT 121
+FL++K +F+EI Y+ +E+IIHNA FD+GFL+ E + ++ + + DT
Sbjct: 62 EFLEDKPRFAEIAQTLAEYLEGAELIIHNAPFDLGFLNHEFKAVNPAHVALESRQPVIDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L+ AR+++ G+RNSLDALC R+ I +R LHG LLDA+LL +VYL+MT GQ ++ +
Sbjct: 122 LVEARQLYPGQRNSLDALCKRFEIDNSNRELHGALLDAQLLGDVYLSMTGGQIDIGLAAE 181
Query: 182 INNSNNIETKIKIPNNIP-------IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + ++ + A+ +E H L + K S RC+W+
Sbjct: 182 DSAESGALATAGLAEHLAQAATRPRVTRASEDEQAAHARYLDMLAKASGDRCLWR 236
>gi|383317696|ref|YP_005378538.1| DNA polymerase III subunit epsilon [Frateuria aurantia DSM 6220]
gi|379044800|gb|AFC86856.1| DNA polymerase III, epsilon subunit [Frateuria aurantia DSM 6220]
Length = 236
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 145/233 (62%), Gaps = 6/233 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL + GHR+IEI CVE+ R+ TG Y+NP R ++ A + G+
Sbjct: 2 RQVVLDTETTGLEVRQGHRLIEIACVEMIERRPTGKTFQTYLNPDRAIDEGARQVTGIED 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG--YSNFTKYIYRITD 120
+FL +K +F E+++ FL +V SE+IIHNA+FDVGFL+ EL+ G + + Y + D
Sbjct: 62 EFLLDKPRFPEVIEPFLAFVRGSELIIHNASFDVGFLNAELARAGTQWGQISDYCP-VLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS--NLNF 178
TL MAR + G+RNSLDALC R + R LHGGL+DA+LLA+VYLAMT GQ +L F
Sbjct: 121 TLAMARTRYPGQRNSLDALCKRLGVDNSRRDLHGGLIDAQLLADVYLAMTSGQVALDLGF 180
Query: 179 KPKINNSN-NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + ++ + I + I A+ EL +H L+ +DK + G +W++
Sbjct: 181 EGEQGGADHEVAKPINLSRRPRILRASEAELARHEARLTALDKSAGGESLWRR 233
>gi|254508645|ref|ZP_05120760.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16]
gi|219548402|gb|EED25412.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus 16]
Length = 247
Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 155/241 (64%), Gaps = 13/241 (5%)
Query: 1 MHRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSAL 55
HR +VLD ETTG+N G HRIIEIG VEI NR++TG + H YI P RD + A+
Sbjct: 9 QHRIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPDRDIQAEAV 68
Query: 56 AIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKY 114
+HG+T +FL +K ++ ++ FL ++ +E++ HNA FD GF+D E +L S T
Sbjct: 69 QVHGITDEFLVDKPEYQDVHAEFLEFIKGAELVAHNAPFDTGFMDYEFEMLDPSIGKTDD 128
Query: 115 IYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
++TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 YCKVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQT 188
Query: 175 NLNFKPKINNSNNI--ETKIKIPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+L F ++ +++ E+ ++ + + + A+++EL H L ++K +G C+W+
Sbjct: 189 SLQFNAGNSDGSDVGGESIKRVASGRKALKVIRASADELEAHQNRLDIVEK--SGSCLWR 246
Query: 230 K 230
+
Sbjct: 247 Q 247
>gi|21230449|ref|NP_636366.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66769557|ref|YP_244319.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
campestris str. 8004]
gi|188992765|ref|YP_001904775.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
campestris str. B100]
gi|384426853|ref|YP_005636210.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
raphani 756C]
gi|21112012|gb|AAM40290.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
campestris str. ATCC 33913]
gi|66574889|gb|AAY50299.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
campestris str. 8004]
gi|167734525|emb|CAP52735.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
campestris]
gi|341935953|gb|AEL06092.1| DNA polymerase III, epsilon subunit [Xanthomonas campestris pv.
raphani 756C]
Length = 245
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/234 (45%), Positives = 146/234 (62%), Gaps = 10/234 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +GNN H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLRPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F+E+V+ FL Y+ +E+IIHNAAFD+GFLD ELSLLG F + I R T D
Sbjct: 62 EFLADKPVFAEVVEEFLAYIDGAELIIHNAAFDLGFLDNELSLLG-DQFGRIIDRATVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIGFGA 180
Query: 181 --KINNSNNIETKIKIPNNI----PIKLANSNELVQHNMILSKIDKHSNGRCIW 228
++ E I ++ P + +EL H L ++ K + GR +W
Sbjct: 181 MDAGQHAEGGEGMIAFDPSLLLPRPRVVVTPSELQAHEARLERLRKKA-GRALW 233
>gi|260772249|ref|ZP_05881165.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
gi|260611388|gb|EEX36591.1| DNA polymerase III epsilon subunit [Vibrio metschnikovii CIP 69.14]
Length = 246
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 103/241 (42%), Positives = 156/241 (64%), Gaps = 18/241 (7%)
Query: 3 RHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N +GHRIIEIG VEI +R++TG + H Y+ P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNFEGGPHYEGHRIIEIGAVEIIDRKLTGRHFHVYLKPDREIQPQAIEV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T FL +K ++ E+ FL+++ +E++ HNA+FDVGF+D E + + + T+
Sbjct: 71 HGITDAFLVDKPQYKEVHQEFLDFIKGAELVAHNASFDVGFMDYEFAKVNPAIGKTEQYC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KITDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NF-------KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F +P + ++ + K N+ + A+++E+ H L ++K +G C+W+
Sbjct: 191 QFSASSQSGEPAGSFVQRVQGERK---NLKVLRASADEIEAHQQRLDVVEK--SGICLWR 245
Query: 230 K 230
+
Sbjct: 246 Q 246
>gi|374313990|ref|YP_005060419.1| DNA polymerase III, e subunit [Serratia symbiotica str. 'Cinara
cedri']
gi|363988216|gb|AEW44407.1| DNA polymerase III, e subunit [Serratia symbiotica str. 'Cinara
cedri']
Length = 257
Score = 201 bits (512), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 112/239 (46%), Positives = 157/239 (65%), Gaps = 12/239 (5%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I LD ETTG+N + +GHRIIEIG VE NR+ITG + H Y+ P R + A IH
Sbjct: 16 RQIFLDTETTGMNKLGVHYEGHRIIEIGAVEAINRRITGRHYHAYVKPNRLVDLEAYNIH 75
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYR 117
G++ +FL +K F++IVD+FLN++ SE+IIHNA FD+GFLD E LL + +
Sbjct: 76 GISDEFLADKPTFNQIVDDFLNFIRGSELIIHNAMFDLGFLDYEFRLLEKVIPKIEDVCN 135
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L++AR++ GKRN+LDALC RYNI +RTLHG LLDA+LLA+VYLAMT GQ ++
Sbjct: 136 IVDSLVIARRLFPGKRNNLDALCSRYNIDNRNRTLHGALLDADLLAKVYLAMTGGQISII 195
Query: 178 FKPK------INNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F+ + I+ + +I+ I+ +I + A+ EL H L+ I + S G C+W+K
Sbjct: 196 FQMEGDIHYNIDAAQDIQRIIRPEMDIKVIYASDKELASHERYLNLIMEKS-GSCLWQK 253
>gi|437710186|ref|ZP_20826291.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
gi|435288959|gb|ELO65949.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Enteritidis str. 543463 42-20]
Length = 221
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 96/181 (53%), Positives = 129/181 (71%), Gaps = 5/181 (2%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 189
Query: 178 F 178
F
Sbjct: 190 F 190
>gi|374619884|ref|ZP_09692418.1| DNA polymerase III, epsilon subunit [gamma proteobacterium HIMB55]
gi|374303111|gb|EHQ57295.1| DNA polymerase III, epsilon subunit [gamma proteobacterium HIMB55]
Length = 237
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 144/236 (61%), Gaps = 8/236 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL + GHRIIEIGCVEI +R++TG + H YI P R ++ AL +HG+T
Sbjct: 2 RQVVLDTETTGLEVSQGHRIIEIGCVEIIDRKLTGRHYHQYIKPQRAIDQGALEVHGITE 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RITDT 121
+FL +K F+ + D FL+++ +E++IHNA FD+GF++ E LL S+ Y +ITD+
Sbjct: 62 EFLADKPVFARVADEFLDFIRGAELVIHNAPFDIGFMEAEFKLLDPSSSPVSSYCKITDS 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
L +AR H G+RN+LDALC RY + +RTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 122 LQLARSKHPGQRNNLDALCQRYAVDNSNRTLHGALLDAEILADVYLLMTGGQTSLGLSAD 181
Query: 182 -------INNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+S+ I + + + +E+ H L + +W++
Sbjct: 182 EEGAGVGAASSSAIRRLASDRPKLKVITPSDDEIASHEARLDVLADRCEEGAVWRR 237
>gi|253988342|ref|YP_003039698.1| putative DNA polymerase III epsilon chain [Photorhabdus
asymbiotica]
gi|253779792|emb|CAQ82953.1| putative DNA polymerase III epsilon chain [Photorhabdus
asymbiotica]
Length = 248
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG+N + +GH+IIEIG VE+ NR++TG + H Y+ P R + A +H
Sbjct: 7 RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHIYVKPDRLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F++I D F+ ++ +E+IIHNA FD+GF+D E L T +
Sbjct: 67 GISDEFLQDKPLFADIADEFIEFIRGAELIIHNAPFDIGFMDYEFGKLNRDIPPTTDFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +AR + GKRN+LDALCDRY+I RTLHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 127 VTDSLQLARALFPGKRNNLDALCDRYDIDNSQRTLHGALLDAEILADVYLIMTGGQTALA 186
Query: 178 F--KPKINNSNNIE--TKIKIPNN-IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + +++ S N+ +I P + + A EL H L ++K G C+W+
Sbjct: 187 FSMEGEVSGSANVSEVQRITRPQTALKVIYATGEELAAHESRLDLVEK-KGGSCLWR 242
>gi|270156747|ref|ZP_06185404.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
gi|289164806|ref|YP_003454944.1| DNA polymerase III, epsilon chain [Legionella longbeachae NSW150]
gi|269988772|gb|EEZ95026.1| DNA polymerase III epsilon subunit [Legionella longbeachae D-4968]
gi|288857979|emb|CBJ11839.1| putative DNA polymerase III, epsilon chain [Legionella longbeachae
NSW150]
Length = 233
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 157/233 (67%), Gaps = 7/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ GHR+IEIGCVE+ +R++TGN+ H Y+NP R ++ A +HG++
Sbjct: 2 RQVVLDTETTGIGHEHGHRVIEIGCVELIDRKLTGNHFHVYLNPQRLVDEGAFRVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F+++ + F ++S +E+IIHNA FDVGFL+ EL L+ ++ + +ITDTL
Sbjct: 62 EFLQDKPLFADVAEKFWRFISGAELIIHNAPFDVGFLNSELQLINWNKKLEVYCKITDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK- 181
++AR+ + G+RNSLDALC RY I +R LHG LLDAE+LA VYLAMT GQ++L + +
Sbjct: 122 VLAREKYPGQRNSLDALCKRYGIDHFNRELHGALLDAEILAFVYLAMTGGQTSLFAEVEE 181
Query: 182 ----INNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+N+ + + + N++ + A++ EL H + + + K S G W++
Sbjct: 182 TSLHVNSKSQETVALHLENSVVLP-ASAEELESHQLFIDFLHKKS-GVNYWEE 232
>gi|226939810|ref|YP_002794883.1| DnaQ [Laribacter hongkongensis HLHK9]
gi|226714736|gb|ACO73874.1| DnaQ [Laribacter hongkongensis HLHK9]
Length = 240
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 145/229 (63%), Gaps = 5/229 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ HR+IE+ +E+ NR++TG +LH YI+P RD + A +HG++
Sbjct: 2 RQIILDTETTGLDP-QSHRLIEVAGLEMVNRKLTGRHLHLYIHPQRDIDPDAQRVHGISL 60
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L+ K F + +++ ++E+IIHNAAFD+GFL+ E + +G K + DTL
Sbjct: 61 DMLEGKPVFKAVAGEIADFLRDAELIIHNAAFDIGFLNAEFARVGLPATQKVAGNVIDTL 120
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MAR+I GKRN+LDALCDR++I + +RTLHG L+D ELLA+VYLAMTRGQ +L I
Sbjct: 121 AMAREIFPGKRNNLDALCDRFDIDRSNRTLHGALIDCELLADVYLAMTRGQESLEM--AI 178
Query: 183 NNSNNIETKIKIPNNIP--IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+++ N P ++ A+ E H+ L +DK + G C+W+
Sbjct: 179 EPDQGEGGTLRLGNRKPLVVQKASEAECAVHSRYLELLDKKAGGPCVWR 227
>gi|251792047|ref|YP_003006767.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus
NJ8700]
gi|422336806|ref|ZP_16417778.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus
F0387]
gi|247533434|gb|ACS96680.1| DNA polymerase III, epsilon subunit [Aggregatibacter aphrophilus
NJ8700]
gi|353345816|gb|EHB90105.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus
F0387]
Length = 254
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 104/238 (43%), Positives = 147/238 (61%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPEAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K FS+I + F+ Y+ +E++IHNA FDVGF+D E L T I +
Sbjct: 69 GITDEMLADKPDFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFRKLNLPIKTNDICTV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL+MAR+++ GK+N+LDALC R +I RTLHG LLDAE+LA+VYLAMT GQ++L
Sbjct: 129 TDTLVMARQMYPGKKNNLDALCSRLDIDNSKRTLHGALLDAEILADVYLAMTGGQTSLFD 188
Query: 177 ----NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + +++ + N+ + EL H L I+K S C+W +
Sbjct: 189 ESEQDVIQQAVTHHQVKSAVTFSRNLRLLTPTEEELEAHLEYLKLINKKSKENCLWDR 246
>gi|452748111|ref|ZP_21947900.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri NF13]
gi|452008260|gb|EME00504.1| DNA polymerase III subunit epsilon [Pseudomonas stutzeri NF13]
Length = 239
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 92/199 (46%), Positives = 135/199 (67%), Gaps = 7/199 (3%)
Query: 5 IVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKF 64
+VLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+ ++ A+A+HG+T +F
Sbjct: 2 VVLDTETTGMPVTDGHRIIEIGCVEVIGRRLTGRHYHVYLQPDREVDEGAIAVHGITNEF 61
Query: 65 LKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI--YRITDTL 122
L +K +F ++ D F ++ +++++IHNAAFD+GF++ E +LLG + + DTL
Sbjct: 62 LVDKPRFRDVADEFFEFIKDAQLVIHNAAFDLGFINNEFALLGQQERAEITDHCSVLDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
LMAR+ H G+RNSLDALC RY + R LHG LLDAE+LA+V+L MT GQ+NL+
Sbjct: 122 LMARERHPGQRNSLDALCKRYGVDNSGRDLHGALLDAEILADVWLTMTGGQTNLSLAGDG 181
Query: 183 NNSNNIETKIKIPNNIPIK 201
+S+ P PI+
Sbjct: 182 ESSDGGR-----PQPTPIR 195
>gi|145639808|ref|ZP_01795410.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
gi|145271176|gb|EDK11091.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittII]
Length = 256
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 152/244 (62%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG++ + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I++ + +N+ + ++EL H +L ++K S C
Sbjct: 185 DEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMMNKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|322831648|ref|YP_004211675.1| DNA polymerase III subunit epsilon [Rahnella sp. Y9602]
gi|384256762|ref|YP_005400696.1| DNA polymerase III subunit epsilon [Rahnella aquatilis HX2]
gi|321166849|gb|ADW72548.1| DNA polymerase III, epsilon subunit [Rahnella sp. Y9602]
gi|380752738|gb|AFE57129.1| DNA polymerase III subunit epsilon [Rahnella aquatilis HX2]
Length = 245
Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG+N + +GHRIIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 9 RIVVLDTETTGMNKLGVHYEGHRIIEIGAVEVVNRRLTGRNFHVYLKPDRLVDPEAFGVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F+++ D+F+ Y+ E++IHNA FD+GF+D E +LG + T+ +
Sbjct: 69 GISDEFLADKPTFADVADDFIEYIRGGELVIHNATFDIGFMDYEFDMLGRNLPKTETFCK 128
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L MARK+ GKRN+LDAL DRY I RTLHG LLD+E+LAEVYL MT GQ+++
Sbjct: 129 ITDSLAMARKLFPGKRNNLDALSDRYLIDNSKRTLHGALLDSEILAEVYLMMTGGQTSIK 188
Query: 178 FKPKINNSN-----NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + + I+ + + + + A EL H L + K G C+W+
Sbjct: 189 FTHEGEQNTGADGLGIQRVARPASGLKVIAATDQELAWHEERLDLVVK-KGGSCLWR 244
>gi|145579465|pdb|2GUI|A Chain A, Structure And Function Of Cyclized Versions Of The
Proofread Exonuclease Subunit Of E. Coli Dna Polymerase
Iii
Length = 194
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 128/179 (71%), Gaps = 5/179 (2%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 70 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 130 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSM 188
>gi|346723966|ref|YP_004850635.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
citrumelo F1]
gi|346648713|gb|AEO41337.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
citrumelo F1]
Length = 244
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 145/236 (61%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +GNN H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F E+VD FL Y+ +E+IIHNAAFD+GFLD EL+LLG ++ + + R T D
Sbjct: 62 EFLADKPLFGEVVDEFLAYIDGAELIIHNAAFDLGFLDNELALLG-DHYGRIVERATVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIGFAS 180
Query: 181 KINNSNN--------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +P P ++EL H L+++ K + GR +W
Sbjct: 181 ADAGQQTDAASGVIAFDPALLLPR--PRVAVTASELQAHEARLAQLRKKA-GRALW 233
>gi|334143656|ref|YP_004536812.1| DNA polymerase III subunit epsilon [Thioalkalimicrobium cyclicum
ALM1]
gi|333964567|gb|AEG31333.1| DNA polymerase III, epsilon subunit [Thioalkalimicrobium cyclicum
ALM1]
Length = 234
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 152/239 (63%), Gaps = 19/239 (7%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG++ GHRIIEIG VE+ +R++TG+ H YI+P R+ EK A+ +HG+T
Sbjct: 2 RQIILDTETTGIDPKKGHRIIEIGAVEVIDRRVTGSYYHQYIHPEREVEKEAINVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FLK+K FS IVD F+ +V+ +E+IIHNA FDVGF++ EL+LL + +ITD
Sbjct: 62 EFLKDKPVFSAIVDEFMAFVTGAELIIHNAPFDVGFINHELNLLKPNTRGIIEDYCKITD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK- 179
TL MAR+++ G+R SLDALC R + +RTLHG LLDAE+LA+VYL MT GQ +L+ K
Sbjct: 122 TLKMARRMYPGQRASLDALCKRLMVDNSNRTLHGALLDAEILADVYLLMTGGQVSLSLKN 181
Query: 180 ----------PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
++ N +T+++I + EL H L+++ K +N W
Sbjct: 182 QQDAASAAAQTRLTNPAEAQTQLRIIT------PSDEELAAHRDYLTQLAKETNTEIRW 234
>gi|24987377|pdb|1J53|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 8.5
gi|24987378|pdb|1J54|A Chain A, Structure Of The N-Terminal Exonuclease Domain Of The
Epsilon Subunit Of E.Coli Dna Polymerase Iii At Ph 5.8
gi|119390109|pdb|2IDO|A Chain A, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
Complex
gi|119390111|pdb|2IDO|C Chain C, Structure Of The E. Coli Pol Iii Epsilon-Hot Proofreading
Complex
gi|340707380|pdb|2XY8|A Chain A, Paramagnetic-Based Nmr Structure Of The Complex Between
The N-Terminal Epsilon Domain And The Theta Domain Of
The Dna Polymerase Iii
Length = 186
Score = 201 bits (510), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 96/179 (53%), Positives = 128/179 (71%), Gaps = 5/179 (2%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSM 185
>gi|319941413|ref|ZP_08015741.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
gi|319805033|gb|EFW01863.1| DNA polymerase III [Sutterella wadsworthensis 3_1_45B]
Length = 246
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 104/232 (44%), Positives = 148/232 (63%), Gaps = 9/232 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHY---YINPGRDSEKSALAIHG 59
R I LD ETTGL+ +G RIIEIGCV I+ R + + H+ ++NP R+ + A+AIHG
Sbjct: 6 RLITLDTETTGLDAQNGDRIIEIGCVAIEGRMMRSTDEHHLQIFVNPEREVPEEAVAIHG 65
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
+TT++L++K KF+EI D F+++V S ++IHNAAFD GFLDMEL G + Y ++
Sbjct: 66 ITTEYLQDKPKFAEIADKFIDFVKGSTLVIHNAAFDTGFLDMELGRCGRGKISDYC-QVI 124
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DT+ +A+K+ G+ SLD+LC Y I +RTLHG LLDAELLAEVYL+++RGQ L
Sbjct: 125 DTVKLAKKLLPGRAVSLDSLCRYYEIDNSNRTLHGALLDAELLAEVYLSLSRGQDTLTL- 183
Query: 180 PKINNS-NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+N +N+ +I IK A+ EL +H IL +K + W+K
Sbjct: 184 --VNEDIDNLPPMPAFDASIVIK-ASPEELAEHERILDIAEKKAKATPAWRK 232
>gi|345874504|ref|ZP_08826315.1| DNA polymerase III, epsilon subunit [Neisseria weaveri LMG 5135]
gi|417957847|ref|ZP_12600765.1| DNA polymerase III, epsilon subunit [Neisseria weaveri ATCC 51223]
gi|343967593|gb|EGV35836.1| DNA polymerase III, epsilon subunit [Neisseria weaveri ATCC 51223]
gi|343970415|gb|EGV38592.1| DNA polymerase III, epsilon subunit [Neisseria weaveri LMG 5135]
Length = 241
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 143/231 (61%), Gaps = 5/231 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL + R++E +E+ NRQ T NNLH Y++P RD + A A+HGLT
Sbjct: 4 RQIILDTETTGLYANNDDRLVEFAGLEMVNRQFTANNLHLYVHPERDMPEEAAAVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME + +G + +TD
Sbjct: 64 EVLEEKNAPVFAEVGRRIADFLRGAELIIHNAKFDVGFLNMEFTRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NF 178
TL MA+++ G++ SLDALC R+ I + R HG L+D ELL EVYLAMTRGQ +L N
Sbjct: 124 TLAMAKEMFPGQKASLDALCTRFEIDRSKRVFHGALIDCELLGEVYLAMTRGQFSLVDNL 183
Query: 179 KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ +++ + K + P + + A+ EL H L +DK S+G+C W+
Sbjct: 184 QDEVSAGEEAQ-KTQRPEYLKVLCADEGELALHEAYLDALDKASDGQCAWR 233
>gi|145633563|ref|ZP_01789291.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
gi|144985769|gb|EDJ92383.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 3655]
Length = 256
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 106/244 (43%), Positives = 152/244 (62%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG++ + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDLAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I++ + +N+ + ++EL H +L ++K S C
Sbjct: 185 DEEESVESEVIRVVQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLELLKMLNKKSGNNC 244
Query: 227 IWKK 230
+W K
Sbjct: 245 LWDK 248
>gi|94502173|ref|ZP_01308671.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
gi|94425698|gb|EAT10708.1| DNA polymerase III, epsilon subunit [Oceanobacter sp. RED65]
Length = 237
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 101/222 (45%), Positives = 145/222 (65%), Gaps = 13/222 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG+ DGHRIIEIGCVE+ R++TG + H YINP R+ + A+ +HG+T
Sbjct: 2 RQVVLDTETTGIG--DGHRIIEIGCVELVGRKLTGRHYHQYINPQREVDPEAMEVHGITD 59
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--IYRITD 120
+FL +K F+++ + FL++++ +E++IHNA FDVGF+DME + L SNF K + + D
Sbjct: 60 EFLADKPVFAQVANEFLDFINGAELVIHNAPFDVGFMDMEFAKL--SNFPKTAEVCGVLD 117
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +ARK++ G+RNSLDALC R I HR LHG LLD+E+LA+VYL MT GQ+ L+
Sbjct: 118 TLTLARKMYPGQRNSLDALCRRLGIDNSHRELHGALLDSEILADVYLLMTGGQTALSLAS 177
Query: 181 K---INNSNNIETKIKIPN----NIPIKLANSNELVQHNMIL 215
+ S+ + K+ + N+P +E QH L
Sbjct: 178 EDASTEGSHELSVKVLVDQSQVANLPSWGVTDDEARQHQEYL 219
>gi|78046646|ref|YP_362821.1| DNA polymerase III subunit epsilon [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325925275|ref|ZP_08186679.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
gi|78035076|emb|CAJ22721.1| DNA polymerase III epsilon chain [Xanthomonas campestris pv.
vesicatoria str. 85-10]
gi|325544321|gb|EGD15700.1| DNA polymerase III, epsilon subunit [Xanthomonas perforans 91-118]
Length = 244
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 145/236 (61%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +GNN H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F E+VD FL Y+ +E+IIHNAAFD+GFLD EL+LLG ++ + + R T D
Sbjct: 62 EFLADKPLFGEVVDEFLAYIDGAELIIHNAAFDLGFLDNELALLG-DHYGRIVERATVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIGFAS 180
Query: 181 KINNSNN--------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +P P ++EL H L+++ K + GR +W
Sbjct: 181 ADAGQQTDAASGVIAFDPALLLPR--PRIAVTASELQAHEARLAQLRKKA-GRALW 233
>gi|386717358|ref|YP_006183684.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
D457]
gi|384076920|emb|CCH11506.1| DNA polymerase III epsilon subunit [Stenotrophomonas maltophilia
D457]
Length = 243
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 143/235 (60%), Gaps = 13/235 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+RI+EIGCVE+ R+ TGNN H YI P + E+ A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F++I D FL ++ +E+IIHNAAFD+GFLD ELSLLG + K R T D
Sbjct: 62 EFLADKPDFAQIADEFLAFIDGAELIIHNAAFDLGFLDNELSLLG-PQYGKITDRCTVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-- 178
TL+MAR+ G+RNSLDALC R + HR LHGGLLDA++L +VY+A+T GQ + F
Sbjct: 121 TLVMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIGFGL 180
Query: 179 -----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+T +P P +A +EL H L ++ K + G +W
Sbjct: 181 GDDDGGGAGAALQAFDTSKLLPR--PRVMATPSELEAHAARLERLRKKA-GHALW 232
>gi|433679147|ref|ZP_20510922.1| DNA polymerase III subunit epsilon [Xanthomonas translucens pv.
translucens DSM 18974]
gi|430815734|emb|CCP41473.1| DNA polymerase III subunit epsilon [Xanthomonas translucens pv.
translucens DSM 18974]
Length = 246
Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 146/237 (61%), Gaps = 17/237 (7%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +G N H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRVVEIGAVELLKRRPSGRNFHRYLRPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K +F E+VD FL ++ +E+IIHNA+FD+GFLD ELSLLG S + + + R T D
Sbjct: 62 EFLADKPEFREVVDEFLAFIDGAELIIHNASFDLGFLDNELSLLGAS-YGRILDRATVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLLMAR+ G+RNSLDALC R + HR LHG LLDA++L+EVY+A+T GQ + F
Sbjct: 121 TLLMARERFPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILSEVYIALTSGQEEIGFAL 180
Query: 181 KINNSN---------NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ ++ T + P +P ++EL H L K+ K + GR +W
Sbjct: 181 ADERGSHAHGQRVAFDMATLLPRPRVLP----TASELDAHQARLEKLRKKA-GRAVW 232
>gi|330445182|ref|ZP_08308834.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
gi|328489373|dbj|GAA03331.1| DNA polymerase III, epsilon subunit [Photobacterium leiognathi
subsp. mandapamensis svers.1.1.]
Length = 241
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 148/237 (62%), Gaps = 11/237 (4%)
Query: 2 HRHIVLDIETTGLNI----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IV D ETTG+N+ +GHRIIEIG VEI NR++TGN H YI P R + A+ +
Sbjct: 6 QRIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPDRPIDPEAIDV 65
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL K ++EI F++++ +E++ HNA+FD+GF+D E L+G T+ I
Sbjct: 66 HGITDEFLVGKPSYAEIHQEFIDFIDGAELVAHNASFDIGFMDYEFQLMGSDLKKTEDIC 125
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+++ GKRN+LD LC RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 126 KVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLMMTGGQTSL 185
Query: 177 NFKPKINNSNNIETKIK----IPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ E IK + + LA ++EL H L I K ++ +W+
Sbjct: 186 KLSSDSEGDSDTEFAIKRLTGERKGLKVILAAADELTAHEERLDLIGKKAD--VLWR 240
>gi|260767799|ref|ZP_05876734.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
gi|260617308|gb|EEX42492.1| DNA polymerase III epsilon subunit [Vibrio furnissii CIP 102972]
Length = 246
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 102/238 (42%), Positives = 151/238 (63%), Gaps = 12/238 (5%)
Query: 3 RHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N+ +GHRIIEIG VEI NR++TG + H Y+ P R + A+ +
Sbjct: 11 RIVVLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRAIQDEAIEV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG+T +FL +K ++ ++ + FL+++ +E++ HNA FDVGF+D E S L T +
Sbjct: 71 HGITDEFLVDKPEYKDVHEEFLDFIRGAELVAHNAPFDVGFMDYEFSKLSIPTAKTDELC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NFKPKIN----NSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F + I+ + + + A ++E+ H L ++K +G C+W++
Sbjct: 191 QFSGSSQENGMGAGAIKRVAEGRKALKVLRATADEIQAHQDRLDIVEK--SGTCLWRQ 246
>gi|325914917|ref|ZP_08177249.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
35937]
gi|325538810|gb|EGD10474.1| DNA polymerase III, epsilon subunit [Xanthomonas vesicatoria ATCC
35937]
Length = 244
Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 146/234 (62%), Gaps = 10/234 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +GNN H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F ++V+ FL Y+ +E+IIHNAAFD+GFLD ELSLLG + + I R T D
Sbjct: 62 EFLADKPLFGDVVEEFLAYIDGAELIIHNAAFDLGFLDNELSLLG-DGYGRIIDRATVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLMMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQEEIGFAS 180
Query: 181 KINNSNNIETKIKIPNNI------PIKLANSNELVQHNMILSKIDKHSNGRCIW 228
N+ E+ I + P + ++E H L+++ K + GR +W
Sbjct: 181 ADAGQNSNESSGMIAFDPALLLPRPRVVVTASESQAHEARLAQLRKKA-GRALW 233
>gi|319787627|ref|YP_004147102.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas suwonensis
11-1]
gi|317466139|gb|ADV27871.1| DNA polymerase III, epsilon subunit [Pseudoxanthomonas suwonensis
11-1]
Length = 247
Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 144/234 (61%), Gaps = 8/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIGCVE+ R+ +G N H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRVVEIGCVELLERRPSGRNFHRYLKPDCDFEAGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR--ITD 120
+FL +K F EIVD FL Y+ +E+IIHNAAFD+GFLD ELS G ++ + + R + D
Sbjct: 62 EFLADKPAFEEIVDEFLEYIDGAELIIHNAAFDLGFLDYELSRCG-AHLGRIVDRCSVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLL+AR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLLLARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIGFGD 180
Query: 181 -KINNSNNIETKI---KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + T + + P A EL H L ++ K + GR +W +
Sbjct: 181 VEAASRGPVVTTVSFAPVSGERPRISAQPEELEAHARRLERLRKKA-GRALWDQ 233
>gi|126667360|ref|ZP_01738332.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
gi|126628116|gb|EAZ98741.1| DNA polymerase III subunit epsilon [Marinobacter sp. ELB17]
Length = 236
Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 143/231 (61%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHRIIEIGCVE+ R +TG N H Y+NPGR+ E A+AIHG+T
Sbjct: 2 RQIVLDTETTGIDPNEGHRIIEIGCVELVERTLTGRNYHVYVNPGREVEAEAVAIHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ + D F ++ +E++IHNAAFDVGF+D E L T I DTL
Sbjct: 62 EFLADKPLFAVVADEFFEFIRGAELVIHNAAFDVGFMDAEFGRLDGGRKTAEHCGIVDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ARK H G++N+L+ALC RY + +R LHG LLDAE+LA+VYL +T GQ+ L
Sbjct: 122 AIARKRHPGQKNNLNALCKRYGVDNSNRELHGALLDAEILADVYLLLTGGQTALLLDAGS 181
Query: 183 NN---SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ I + + A+++E + H ++ ++K + G +W +
Sbjct: 182 GEGAHGDGIRRVQAAREALQVIRASADEDLAHREFMAMMEKKA-GSTVWSQ 231
>gi|344206269|ref|YP_004791410.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
JV3]
gi|343777631|gb|AEM50184.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
JV3]
Length = 243
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 143/235 (60%), Gaps = 13/235 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+RI+EIGCVE+ R+ TGNN H YI P + E+ A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F++I D FL ++ +E+IIHNAAFD+GFLD ELSLLG + K R T D
Sbjct: 62 EFLADKPDFAQIADEFLAFIDGAELIIHNAAFDLGFLDNELSLLG-PQYGKITDRCTVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-- 178
TL+MAR+ G+RNSLDALC R + HR LHGGLLDA++L +VY+A+T GQ + F
Sbjct: 121 TLVMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIGFGL 180
Query: 179 -----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+T +P P +A +EL H L ++ K + G +W
Sbjct: 181 GDDDGGGAGAALQAFDTSKLLPR--PRVVATPSELEAHAARLERLRKKA-GHALW 232
>gi|424667293|ref|ZP_18104318.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
Ab55555]
gi|401068907|gb|EJP77430.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
Ab55555]
Length = 243
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 143/235 (60%), Gaps = 13/235 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+RI+EIGCVE+ R+ TGNN H YI P + E+ A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K +F++I D FL ++ +E+IIHNAAFD+GFLD ELSLLG + K R T D
Sbjct: 62 EFLDDKPEFAQIADEFLAFIDGAELIIHNAAFDLGFLDNELSLLG-PQYGKIADRCTVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-- 178
TL MAR+ G+RNSLDALC R + HR LHGGLLDA++L +VY+A+T GQ + F
Sbjct: 121 TLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIGFGL 180
Query: 179 -----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+T +P P +A +EL H L ++ K + G +W
Sbjct: 181 GDDDGGGAGAALQAFDTSKLLPR--PRVVATPSELEAHAARLERLRKKA-GHALW 232
>gi|27479696|gb|AAO17223.1| DnaQ [Photorhabdus luminescens]
Length = 248
Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/237 (42%), Positives = 147/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG+N + +GH+IIEIG VE+ NR++TG + H YI P R + A +H
Sbjct: 7 RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVVNRRLTGRHFHVYIQPDRLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F+++ D F+ ++ +E+IIHNA FD+GF+D E L T +
Sbjct: 67 GISDEFLQDKPLFADVADEFVEFIRGAELIIHNAPFDIGFIDYEFGKLDRDIPPTADFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +AR + GKRN+LDALCDRY+I RTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 127 ITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILADVYLIMTGGQTSLA 186
Query: 178 FKPKIN-----NSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + N + I+ + + + A EL H L ++K G C+W+
Sbjct: 187 FSMEGEIAGGANVSEIQRVTRSQTALKVVYATDEELAAHESRLDLVEK-KGGSCLWR 242
>gi|408823471|ref|ZP_11208361.1| DNA polymerase III subunit epsilon [Pseudomonas geniculata N1]
Length = 243
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 143/235 (60%), Gaps = 13/235 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+RI+EIGCVE+ R+ TGNN H YI P + E+ A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F++I D FL ++ +E+IIHNAAFD+GFLD ELSLLG + K R T D
Sbjct: 62 EFLDDKPDFAQIADEFLAFIDGAELIIHNAAFDLGFLDNELSLLG-PQYGKITDRCTVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-- 178
TL+MAR+ G+RNSLDALC R + HR LHGGLLDA++L +VY+A+T GQ + F
Sbjct: 121 TLVMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIGFGL 180
Query: 179 -----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+T +P P +A +EL H L ++ K + G +W
Sbjct: 181 GDDDGGGAGAALQAFDTSKLLPR--PRVVATPSELEAHAARLERLRKKA-GHALW 232
>gi|381394068|ref|ZP_09919786.1| DNA polymerase III subunit epsilon [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379330340|dbj|GAB54919.1| DNA polymerase III subunit epsilon [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 220
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/219 (47%), Positives = 145/219 (66%), Gaps = 5/219 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+N +GHRIIEIGCVE+ +R++TGN H YINP R+ E+ A+ +HG+T
Sbjct: 2 RQIVLDTETTGINPKEGHRIIEIGCVELIDRKLTGNTFHVYINPMREIEQEAINVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDT 121
+FL +K F +V F++++ +E+IIHNA FDVGF+D E +L S T I DT
Sbjct: 62 EFLTDKPLFKNVVHGFVDFIKGAELIIHNAPFDVGFMDNEFALTDRSLPMTNTFCTILDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS--NLNFK 179
L+MAR++ G++NSLDALC Y + RT HG LLD+E+LAEVYL MT GQ+ +LN
Sbjct: 122 LVMARRMRPGQKNSLDALCKFYQVDNSRRTYHGALLDSEILAEVYLYMTGGQTSLSLNAN 181
Query: 180 PKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILS 216
+ NNS+ IE K+ +K+ A ++++ + I
Sbjct: 182 SENNNSDGIENVKKLSQKPALKIIRATADDIARDEAIFG 220
>gi|322515310|ref|ZP_08068307.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus
ureae ATCC 25976]
gi|322118686|gb|EFX90898.1| DNA-directed DNA polymerase III epsilon subunit [Actinobacillus
ureae ATCC 25976]
Length = 257
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/241 (44%), Positives = 146/241 (60%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG++ GH IIEIG VE+ NR++TG H YI P R+ E+ A+ +H
Sbjct: 8 RQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVEEEAIKVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYR 117
G+T +FL++K F+E+ D F+ ++ +E+IIHNA FDV F+D E S L T I
Sbjct: 68 GITNEFLQDKPVFAEVADEFIEFIKGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEICS 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNL 176
+TD+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ + L
Sbjct: 128 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLIMTGGQLALL 187
Query: 177 NFKPKINNSNNIE-------TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ N NI TK + I ++L+ E H L IDK S G CIW
Sbjct: 188 GEEDASTNHENITDLGLGTITKFETSGLIVLQLSE-EEQAAHEEYLKLIDKKSKGNCIWM 246
Query: 230 K 230
+
Sbjct: 247 R 247
>gi|290476066|ref|YP_003468963.1| DNA polymerase III subunit epsilon [Xenorhabdus bovienii SS-2004]
gi|289175396|emb|CBJ82199.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Xenorhabdus bovienii SS-2004]
Length = 249
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG + H YI P R + A +H
Sbjct: 7 RQIVLDTETTGMNKLGVHYEGHNIIEIGAVEVINRRLTGRHFHLYIKPERLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F++I D F+ ++ +E+IIHNA FD+GF+D E L T
Sbjct: 67 GISDEFLQDKPTFADIADEFIEFIRGAELIIHNATFDIGFMDYEFRKLNRDIPPTADFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L++AR++ GKRN+L+ALCDRY I RTLHG LLDAE+L++VYL MT GQ++L
Sbjct: 127 ITDSLVLARQLFPGKRNNLNALCDRYQIDNSKRTLHGALLDAEILSDVYLTMTGGQTSLT 186
Query: 178 FKPKINNSNNIE----TKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + S + KI P + + A+ EL+QH L ++K G C+W+
Sbjct: 187 FSMEGEISGGAQMAEIQKITRPQTGLKVIYASDEELLQHESRLDLVEK-KGGSCLWR 242
>gi|190573031|ref|YP_001970876.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
K279a]
gi|190010953|emb|CAQ44562.1| putative DNA polymerase III, epsilon chain [Stenotrophomonas
maltophilia K279a]
Length = 243
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 143/235 (60%), Gaps = 13/235 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+RI+EIGCVE+ R+ TGNN H YI P + E+ A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K +F++I D FL ++ +E+IIHNAAFD+GFLD ELSLLG + K R T D
Sbjct: 62 EFLDDKPEFAQIADEFLAFIDGAELIIHNAAFDLGFLDNELSLLG-PQYGKITDRCTVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-- 178
TL MAR+ G+RNSLDALC R + HR LHGGLLDA++L +VY+A+T GQ + F
Sbjct: 121 TLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIGFGL 180
Query: 179 -----KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+T +P P +A +EL H L ++ K + G +W
Sbjct: 181 GDDDGGGAGAALQAFDTSKLLPR--PRVVATPSELEAHAARLERLRKKA-GHALW 232
>gi|455738322|ref|YP_007504588.1| DNA polymerase III epsilon subunit [Morganella morganii subsp.
morganii KT]
gi|455419885|gb|AGG30215.1| DNA polymerase III epsilon subunit [Morganella morganii subsp.
morganii KT]
Length = 244
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 147/237 (62%), Gaps = 10/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A ++H
Sbjct: 7 RQIVLDTETTGMNKLGAHYEGHNIIEIGAVEVINRRLTGRNFHLYIRPDRLVDPEAFSVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I D F+ ++ +E++IHNA FD+GF+D E L T
Sbjct: 67 GISDEFLMDKPVFADIADEFIEFIRGAELVIHNAPFDIGFMDYEFRKLNRGIPPTAEFCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +AR++ GKRN+LDALCDRY I R LHG LLDAE+L++VYLAMT GQ++L
Sbjct: 127 ITDSLTLARQLFPGKRNNLDALCDRYQIDNSKRLLHGALLDAEILSDVYLAMTGGQTSLA 186
Query: 178 FKPKINNS--NNIET--KIKIPNN-IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F +S N++T ++ P + + + A E+ H L +K CIW+
Sbjct: 187 FSADNESSGEENVQTIQRVTRPQSGLRVVYATDEEIAAHEARLDLAEKKGANPCIWR 243
>gi|194364623|ref|YP_002027233.1| DNA polymerase III subunit epsilon [Stenotrophomonas maltophilia
R551-3]
gi|194347427|gb|ACF50550.1| DNA polymerase III, epsilon subunit [Stenotrophomonas maltophilia
R551-3]
Length = 243
Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 145/235 (61%), Gaps = 13/235 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+RI+EIGCVE+ R+ TGNN H YI P + E+ A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F++I D FL ++ +E+IIHNAAFD+GFLD ELSLLG + K R T D
Sbjct: 62 EFLDDKPDFAQIADEFLAFIDGAELIIHNAAFDLGFLDNELSLLG-PQYGKITDRCTVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ G+RNSLDALC R + HR LHGGLLDA++L +VY+A+T GQ + F
Sbjct: 121 TLVMARERFPGQRNSLDALCRRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIGFGL 180
Query: 181 KINNS-------NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +T +P P +A +EL H L ++ K + G +W
Sbjct: 181 GDDEAGAAGAALQAFDTSKLLPR--PRVVATPSELEAHTARLERLRKKA-GHALW 232
>gi|421492483|ref|ZP_15939843.1| DNAQ [Morganella morganii subsp. morganii KT]
gi|400193090|gb|EJO26226.1| DNAQ [Morganella morganii subsp. morganii KT]
Length = 257
Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 147/238 (61%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A ++H
Sbjct: 20 RQIVLDTETTGMNKLGAHYEGHNIIEIGAVEVINRRLTGRNFHLYIRPDRLVDPEAFSVH 79
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I D F+ ++ +E++IHNA FD+GF+D E L T
Sbjct: 80 GISDEFLMDKPVFADIADEFIEFIRGAELVIHNAPFDIGFMDYEFRKLNRGIPPTAEFCT 139
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +AR++ GKRN+LDALCDRY I R LHG LLDAE+L++VYLAMT GQ++L
Sbjct: 140 ITDSLTLARQLFPGKRNNLDALCDRYQIDNSKRLLHGALLDAEILSDVYLAMTGGQTSLA 199
Query: 178 FKPKINNSN--NIET--KIKIPNN-IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F +S N++T ++ P + + + A E+ H L +K CIW+
Sbjct: 200 FSADNESSGEENVQTIQRVTRPQSGLRVVYATDEEIAAHEARLDLAEKKGANPCIWRS 257
>gi|325920993|ref|ZP_08182879.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
19865]
gi|325548527|gb|EGD19495.1| DNA polymerase III, epsilon subunit [Xanthomonas gardneri ATCC
19865]
Length = 244
Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 147/236 (62%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +GNN H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F+++V+ FL Y+ +E+IIHNAAFD+GFLD ELSLLG N+ + + R T D
Sbjct: 62 EFLADKPLFADVVEEFLAYIDGAELIIHNAAFDLGFLDNELSLLG-DNYGRIVERATVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIGFAS 180
Query: 181 KINNSN--------NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + + + +P P ++E H L+++ K + GR +W
Sbjct: 181 ADAGQSTQDADGMISFDPALLLPR--PRVAVTASESQAHEARLAQLRKKA-GRALW 233
>gi|260583276|ref|ZP_05851052.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
gi|260093683|gb|EEW77595.1| DNA polymerase III, epsilon subunit [Haemophilus influenzae NT127]
Length = 256
Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/244 (43%), Positives = 152/244 (62%), Gaps = 17/244 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKR++LDALC+R I RTLHG LLDAE+LA+VYL MT GQ+NL F
Sbjct: 126 TDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNL-F 184
Query: 179 KP------------KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + I++ + +N+ + ++EL H L ++K S C
Sbjct: 185 DEEESVESEVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNKKSGNNC 244
Query: 227 IWKK 230
+W+K
Sbjct: 245 LWEK 248
>gi|148827278|ref|YP_001292031.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
gi|148718520|gb|ABQ99647.1| DNA polymerase III subunit epsilon [Haemophilus influenzae PittGG]
Length = 256
Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 105/243 (43%), Positives = 151/243 (62%), Gaps = 15/243 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F ++ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKDVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKR++LDALC+R I RTLHG LLDAE+LA+VYL MT GQ+NL
Sbjct: 126 TDTLQMARQMYPGKRSNLDALCERLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185
Query: 179 KPKINNS-----------NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCI 227
+ + S I++ + +N+ + ++EL H L ++K S C+
Sbjct: 186 EEESVESGVIHVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNKKSGNNCL 245
Query: 228 WKK 230
W K
Sbjct: 246 WDK 248
>gi|375130196|ref|YP_004992296.1| DNA polymerase III subunit epsilon [Vibrio furnissii NCTC 11218]
gi|315179370|gb|ADT86284.1| DNA polymerase III, epsilon subunit [Vibrio furnissii NCTC 11218]
Length = 234
Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 150/236 (63%), Gaps = 12/236 (5%)
Query: 5 IVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHG 59
+VLD ETTG+N+ +GHRIIEIG VEI NR++TG + H Y+ P R + A+ +HG
Sbjct: 1 MVLDTETTGMNLEGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDRAIQDEAIEVHG 60
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIYRI 118
+T +FL +K ++ ++ + FL+++ +E++ HNA FDVGF+D E S L T + ++
Sbjct: 61 ITDEFLVDKPEYKDVHEEFLDFIRGAELVAHNAPFDVGFMDYEFSKLSIPTAKTDELCKV 120
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ++L F
Sbjct: 121 TDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLQF 180
Query: 179 KPKIN----NSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ I+ + + + A ++E+ H L ++K +G C+W++
Sbjct: 181 SGSSQENGMGAGAIKRVAEGRKALKVLRATADEIQAHQDRLDIVEK--SGTCLWRQ 234
>gi|357418066|ref|YP_004931086.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas spadix
BD-a59]
gi|355335644|gb|AER57045.1| DNA polymerase III subunit epsilon [Pseudoxanthomonas spadix
BD-a59]
Length = 249
Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 141/233 (60%), Gaps = 8/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIGCVE+ R+ +G N H Y+ P + E A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRVVEIGCVELIERRPSGRNFHRYLKPDCEFEAGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG--YSNFTKYIYRITD 120
+FL +K F E+V+ FL Y+ +E+IIHNAAFDVGFLD EL+ LG Y + + D
Sbjct: 62 EFLADKPGFEEVVEEFLAYIRGAEVIIHNAAFDVGFLDSELARLGDHYGRLADHCT-VID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR G+RNSLDALC R + HR LHGGLLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLAMARVRFPGQRNSLDALCRRLGVDNTHRHLHGGLLDAQILADVYIALTSGQEEIGFGA 180
Query: 181 KINNSNNIETKIKI--PNNIPIK---LANSNELVQHNMILSKIDKHSNGRCIW 228
+N + + +N+ ++ L EL H L K+ +S G C+W
Sbjct: 181 MEDNGSATGSVRHAFDASNLGLRARVLPTPGELEAHARRLEKLRSNSGGSCLW 233
>gi|389722525|ref|ZP_10189154.1| DNA polymerase III subunit epsilon [Rhodanobacter sp. 115]
gi|388441558|gb|EIL97823.1| DNA polymerase III subunit epsilon [Rhodanobacter sp. 115]
Length = 239
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 99/234 (42%), Positives = 146/234 (62%), Gaps = 7/234 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL + GHR+IEI CVE+ R+ +G N Y+NP R ++ A + G+
Sbjct: 2 RQVVLDTETTGLEVRQGHRLIEIACVEMVGRRPSGRNYQTYLNPDRAIDEGARQVTGIAD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG--YSNFTKYIYRITD 120
+FL +K F ++V+ FL Y+ +E+IIHNA+FDVGFLD EL+ G Y + + D
Sbjct: 62 EFLLDKPHFEDVVEEFLAYIDGAELIIHNASFDVGFLDAELARAGAHYGRIADHCP-VLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-- 178
TL MAR+ + G+RNSLDALC R + R LHGGL+DA LLAEVYL+MT GQ ++
Sbjct: 121 TLAMARERYPGQRNSLDALCKRLGVDNSARDLHGGLIDALLLAEVYLSMTSGQVAMDLGF 180
Query: 179 -KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHS-NGRCIWKK 230
+P+ + ++ I + + + AN++E H +L +DK + +G +W+K
Sbjct: 181 EEPEESRTSGIVQPVVLTRRPRVLRANADEAAAHERLLDALDKSAGDGGSLWRK 234
>gi|209695823|ref|YP_002263753.1| DNA polymerase III subunit epsilon [Aliivibrio salmonicida LFI1238]
gi|208009776|emb|CAQ80082.1| DNA polymerase III, epsilon chain [Aliivibrio salmonicida LFI1238]
Length = 243
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 112/237 (47%), Positives = 148/237 (62%), Gaps = 14/237 (5%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IVLD ETTG+N I +GHRIIEIG VEI NR++TGN+ H YI P R + A+ +
Sbjct: 10 RIIVLDTETTGMNLSGGPIYEGHRIIEIGAVEIINRKLTGNHFHVYIKPDRLIDLEAIDV 69
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY- 116
HG+T +FL K ++ +I D FL ++ +E++ HNA FDVGF+D E S L T Y
Sbjct: 70 HGITDEFLYGKPEYKDIHDEFLAFIKGAELVAHNAPFDVGFMDYEFSKLNKLIGTTDQYC 129
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITDTL MA+KI GKRN+LD LC RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 130 KITDTLAMAKKISPGKRNNLDVLCGRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 189
Query: 177 NFKPKINNSNNIETKIKIPN----NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+F N S++ E I N + + A ++EL H L + C+W+
Sbjct: 190 SFSAGGNESDSSEESINRLNLGRKGLKVLRATADELEAHEKRLDIV----GDACLWR 242
>gi|410084914|ref|ZP_11281635.1| DNA polymerase III epsilon subunit [Morganella morganii SC01]
gi|409768559|gb|EKN52619.1| DNA polymerase III epsilon subunit [Morganella morganii SC01]
Length = 257
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 103/238 (43%), Positives = 146/238 (61%), Gaps = 10/238 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR++TG N H YI P R + A +H
Sbjct: 20 RQIVLDTETTGMNKLGAHYEGHNIIEIGAVEVINRRLTGRNFHLYIRPDRLVDPEAFGVH 79
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL +K F++I D F+ ++ +E++IHNA FD+GF+D E L T
Sbjct: 80 GISDEFLMDKPVFADIADEFIEFIRGAELVIHNAPFDIGFMDYEFRKLNRGIPPTAEFCT 139
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +AR++ GKRN+LDALCDRY I R LHG LLDAE+L++VYLAMT GQ++L
Sbjct: 140 ITDSLTLARQLFPGKRNNLDALCDRYQIDNSKRLLHGALLDAEILSDVYLAMTGGQTSLA 199
Query: 178 FKPKINNSN--NIET--KIKIPNN-IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F +S N++T ++ P + + + A E+ H L +K CIW+
Sbjct: 200 FSADNESSGEENVQTIQRVTRPQSGLRVVYATDEEIAAHEARLDLAEKKGANPCIWRS 257
>gi|399545146|ref|YP_006558454.1| DNA polymerase III subunit epsilon [Marinobacter sp. BSs20148]
gi|399160478|gb|AFP31041.1| DNA polymerase III subunit epsilon [Marinobacter sp. BSs20148]
Length = 236
Score = 199 bits (506), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 144/231 (62%), Gaps = 4/231 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ +GHRIIEIGCVE+ R +TG N H Y+NPGR E A+AIHG+T
Sbjct: 2 RQIVLDTETTGIDPNEGHRIIEIGCVELVERALTGRNYHVYVNPGRQVEAEAVAIHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ + D F ++ +E++IHNAAFDVGF+D E L T I DTL
Sbjct: 62 EFLADKPLFAVVADEFFEFIRGAELVIHNAAFDVGFMDAEFGRLDGGRKTAEHCGIVDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ARK H G++N+L+ALC RY + +R LHG LLDAE+LA+VYL +T GQ+ L
Sbjct: 122 AIARKRHPGQKNNLNALCKRYGVDNSNRELHGALLDAEILADVYLLLTGGQTALLLDSGS 181
Query: 183 NN---SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ I + + + A+++E + H+ ++ ++K + G +W +
Sbjct: 182 GEGAYGDGIRRVQAARDALQVIRASADEDLAHHKFMAMMEKKA-GLTVWSQ 231
>gi|307246199|ref|ZP_07528280.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|307255179|ref|ZP_07536997.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|307259617|ref|ZP_07541341.1| hypothetical protein appser11_14150 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
gi|306852808|gb|EFM85032.1| hypothetical protein appser1_14030 [Actinobacillus pleuropneumoniae
serovar 1 str. 4074]
gi|306862052|gb|EFM94028.1| hypothetical protein appser9_14150 [Actinobacillus pleuropneumoniae
serovar 9 str. CVJ13261]
gi|306866262|gb|EFM98126.1| hypothetical protein appser11_14150 [Actinobacillus
pleuropneumoniae serovar 11 str. 56153]
Length = 257
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 146/241 (60%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG++ GH IIEIG VE+ NR++TG H YI P R+ E+ A+ +H
Sbjct: 8 RQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVEEEAIKVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYR 117
G+T +FL++K F+E+ D F+ ++ +E+IIHNA FDV F+D E S L T +
Sbjct: 68 GITNEFLQDKPVFAEVADEFIEFIKGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNL 176
+TD+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ + L
Sbjct: 128 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALL 187
Query: 177 NFKPKINNSNNIE-------TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ +N N+ TK + I + L+ E H L IDK S G CIW
Sbjct: 188 GEEDATSNHENVADLGLGTITKFETSGLIVLSLSE-EEQTAHEEYLKLIDKKSKGNCIWM 246
Query: 230 K 230
+
Sbjct: 247 R 247
>gi|33151469|ref|NP_872822.1| DNA polymerase III subunit epsilon [Haemophilus ducreyi 35000HP]
gi|33147689|gb|AAP95211.1| DNA polymerase III epsilon chain [Haemophilus ducreyi 35000HP]
Length = 256
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 108/237 (45%), Positives = 145/237 (61%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG+N GH IIEIG VE+ NR++TG H YI P R+ E+ A+ +H
Sbjct: 8 RQVVLDTETTGMNFNGPPQIGHNIIEIGAVELINRRLTGRTFHVYIKPPREVEEEAIKVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMEL-SLLGYSNFTKYIYR 117
G+T FL++K F+EI FL ++ +E+IIHNA FDV F+D E SL+ + T +
Sbjct: 68 GITNAFLQDKPTFAEIAHEFLAFIQGAELIIHNAPFDVAFIDQEFSSLVNPPSKTAEMCT 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNL 176
+TDTL MARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ + L
Sbjct: 128 VTDTLQMARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALL 187
Query: 177 NFKPKINNSNNIETKIKIPNNIP----IKLANSNELVQ-HNMILSKIDKHSNGRCIW 228
+ + ET + + + I L S E Q H L+ +DK S G C+W
Sbjct: 188 TEEEHSHTQQQRETSLAVKEHFDTSGLIVLQLSQEECQAHQEYLALLDKKSKGNCLW 244
>gi|28199104|ref|NP_779418.1| DNA polymerase III subunit epsilon [Xylella fastidiosa Temecula1]
gi|182681831|ref|YP_001829991.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M23]
gi|386083135|ref|YP_005999417.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|417558079|ref|ZP_12209072.1| DNA polymerase III epsilon subunit [Xylella fastidiosa EB92.1]
gi|28057202|gb|AAO29067.1| DNA polymerase III epsilon chain [Xylella fastidiosa Temecula1]
gi|71728719|gb|EAO30865.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
subunit [Xylella fastidiosa subsp. sandyi Ann-1]
gi|182631941|gb|ACB92717.1| DNA polymerase III, epsilon subunit [Xylella fastidiosa M23]
gi|307578082|gb|ADN62051.1| DNA polymerase III subunit epsilon [Xylella fastidiosa subsp.
fastidiosa GB514]
gi|338179323|gb|EGO82276.1| DNA polymerase III epsilon subunit [Xylella fastidiosa EB92.1]
Length = 239
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 104/233 (44%), Positives = 149/233 (63%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL G+RI+EIG VE+ +R+++G+ H Y+ P E A + GLT
Sbjct: 6 RQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFESGAQEVTGLTM 65
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR--ITD 120
+FL +K +FS I D FL Y++ +E+IIHNAAFD+GFLD ELS LG S + K R + D
Sbjct: 66 EFLADKPEFSMIADKFLAYINGAELIIHNAAFDLGFLDYELSRLG-SQYGKITDRASVLD 124
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 125 TLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQEEIGFAL 184
Query: 181 KINNSNNIETK--IKIPNNI---PIKLANSNELVQHNMILSKIDKHSNGRCIW 228
++ ++ +P+ + P +A+ +EL H L+K+ K + G +W
Sbjct: 185 PESSRGGVDAASVAFMPDVLLTRPCVVASQSELEAHEARLAKLRKIA-GHVLW 236
>gi|444921743|ref|ZP_21241574.1| DNA polymerase III subunit epsilon [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444507121|gb|ELV07302.1| DNA polymerase III subunit epsilon [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 226
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 141/232 (60%), Gaps = 18/232 (7%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R IVLD ETTG++ G RI+EIGCVE+ +R +TGN+ H YINP RD A +HGL
Sbjct: 1 MSRQIVLDTETTGMDPATGDRIVEIGCVEMVDRMLTGNHFHVYINPERDMPVEAFKVHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ +FL +K F+ I +F++Y+ +E+IIHNAAFD+ FLD EL LL + + D
Sbjct: 61 SEEFLSDKPVFASIAQDFVDYIDGAELIIHNAAFDMKFLDHELKLLKMQTLSAQC-GVID 119
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---- 176
+L MAR ++ G+RNSLDALC R I RTLHG LLD+E+LA+V+LAMT GQ +L
Sbjct: 120 SLKMARDMYPGQRNSLDALCRRLGIDNSKRTLHGALLDSEILAQVFLAMTGGQDSLFGGE 179
Query: 177 --------NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDK 220
+ P + N+ + +P + A + E+ H+ +K+ K
Sbjct: 180 GDDDTAAVSLDPSLLNAAAV-----LPEATRVIYATAEEIAAHDAFFAKLKK 226
>gi|91793373|ref|YP_563024.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
OS217]
gi|91715375|gb|ABE55301.1| DNA polymerase III, epsilon subunit [Shewanella denitrificans
OS217]
Length = 242
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 103/235 (43%), Positives = 151/235 (64%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R I+LD ETTG+N I GHRIIEIGCVE+ NR++TG H YINPG+ + A+A+
Sbjct: 9 RQIILDTETTGMNQAGGAIYIGHRIIEIGCVEVINRRLTGRTYHQYINPGQSIDPEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG+T + + N+ +F +I F++++ +EI+ HNA+FDV F+D E S+L TK I
Sbjct: 69 HGITDERVANEPRFHQIAQEFIDFIQGAEIVAHNASFDVSFMDHEFSMLQPRGPKTKDIT 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ--S 174
I D+L +A+++H G++N+LDALC RY I RT HG LLDAE+LA+VYL MT GQ
Sbjct: 129 DILDSLAIAKRLHPGQKNNLDALCKRYGIDNSRRTYHGALLDAEILADVYLLMTGGQIKF 188
Query: 175 NLNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
NL+ + + I+ N+ + A+++ELV H L + K +G+C+W+
Sbjct: 189 NLSNEQAGQEAGGIQRLDPSGFNLKVIAASADELVLHESRLDLVQK--SGKCLWR 241
>gi|333908476|ref|YP_004482062.1| DNA polymerase III subunit epsilon [Marinomonas posidonica
IVIA-Po-181]
gi|333478482|gb|AEF55143.1| DNA polymerase III, epsilon subunit [Marinomonas posidonica
IVIA-Po-181]
Length = 238
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 99/236 (41%), Positives = 151/236 (63%), Gaps = 11/236 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG++ GH+IIEIGCVE+ R++T N+ H YINP R+ E+ A +HG++
Sbjct: 2 RQVILDTETTGIDPRQGHKIIEIGCVEMVGRKLTKNHFHVYINPDREIEEEAFRVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--IYRITD 120
+FL +K +F ++ F ++ +E+IIHNA FD+GF+D E +LLG + + K + + D
Sbjct: 62 EFLNDKPRFHQVAQEFFEFIKGAELIIHNAPFDIGFIDHEFALLG-AGYPKVADVCGVFD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
+L+ ARK H G++N+LDALC RY I HR LHG LLD+E+LA+VYL MT GQ++L
Sbjct: 121 SLVYARKKHPGQKNNLDALCKRYGIDNSHRDLHGALLDSEILADVYLLMTGGQTSLGLAN 180
Query: 181 KINNSNNIETKIK-----IPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
++ +N + + P +K+ A+ EL H L I+K S G+ +W+
Sbjct: 181 SSDSDSNEDGSVGEIRRLSPERPALKVIRASERELQAHEERLDLIEKKS-GQALWR 235
>gi|254361771|ref|ZP_04977906.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
haemolytica PHL213]
gi|261494027|ref|ZP_05990530.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
haemolytica serotype A2 str. BOVINE]
gi|261496213|ref|ZP_05992619.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|452745402|ref|ZP_21945237.1| DNA polymerase III subunit epsilon [Mannheimia haemolytica serotype
6 str. H23]
gi|153093306|gb|EDN74302.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
haemolytica PHL213]
gi|261308165|gb|EEY09462.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
haemolytica serotype A2 str. OVINE]
gi|261310193|gb|EEY11393.1| DNA-directed DNA polymerase III epsilon subunit [Mannheimia
haemolytica serotype A2 str. BOVINE]
gi|452086551|gb|EME02939.1| DNA polymerase III subunit epsilon [Mannheimia haemolytica serotype
6 str. H23]
Length = 258
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 145/241 (60%), Gaps = 13/241 (5%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N+ G H IIEIG VE+ NR++TG H YI P R+ ++ A+A+
Sbjct: 8 RQVVLDTETTGMNMAGGPPQIGHNIIEIGAVEVINRRLTGRTYHVYIKPPREVDEEAIAV 67
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG+T +FL++K F+EI + FL+++ +E+IIHNA FDV F+D E S L T +
Sbjct: 68 HGITNEFLQDKPVFAEIAEEFLDFIKGAELIIHNAPFDVAFMDQEFSYLPNPPAKTAEMC 127
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+TD+L MAR+++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ +L
Sbjct: 128 TVTDSLQMARRMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQISL 187
Query: 177 -------NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
I+ + + I AN E H +L I+K S G C+W
Sbjct: 188 LGEEETEVVSEVIDIEEEFSAIVLNADEAIILKANDEEEESHLALLKLIEKKSKGNCLWT 247
Query: 230 K 230
K
Sbjct: 248 K 248
>gi|336123526|ref|YP_004565574.1| DNA polymerase III subunit epsilon [Vibrio anguillarum 775]
gi|335341249|gb|AEH32532.1| DNA polymerase III, epsilon chain [Vibrio anguillarum 775]
Length = 247
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/240 (42%), Positives = 150/240 (62%), Gaps = 13/240 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRI+EIG VEI NR++TG + H Y+ P R+ + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIVEIGAVEIINRKLTGRHFHVYLKPDREIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYI 115
IHG+T +FL +K ++ ++ FL+++ +E++ HNA FDVGF+D E L T+
Sbjct: 70 IHGITDEFLMDKPQYRDVHQEFLDFIKGAELVAHNAPFDVGFMDYEFRKLDAKIGKTEQY 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINN-----SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
L F + +I+ + + + A ++EL H L ++K +G C+W++
Sbjct: 190 LQFSAGTRSDGSVGGESIKRAVAGRKKLKVLQACADELQAHQERLDLVEK--SGSCLWRQ 247
>gi|307545281|ref|YP_003897760.1| DNA polymerase III subunit epsilon [Halomonas elongata DSM 2581]
gi|307217305|emb|CBV42575.1| DNA polymerase III, epsilon subunit [Halomonas elongata DSM 2581]
Length = 255
Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 145/241 (60%), Gaps = 16/241 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG++ +GHR+IEIG VE+ NR++TGN H YINP RD E A+ +HG+T
Sbjct: 2 RQIILDTETTGIDPREGHRLIEIGAVEMVNRRLTGNTYHQYINPERDIEAEAVEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI------Y 116
+ + ++ F+E+ D F ++ +E++IHNA FDVGF+D E + L + +
Sbjct: 62 EKVADEPVFAEVADAFWAFIKGAELVIHNAPFDVGFIDHEFARLNEARGGPVLGPVAEHC 121
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
RI DTL +AR H G+RN+LDALC RY I HR LHG LLDAE+LA+VYLAMT GQ+ L
Sbjct: 122 RILDTLQLARDKHPGQRNNLDALCKRYEIQNGHRVLHGALLDAEILADVYLAMTGGQTAL 181
Query: 177 NFKPKINN-----SNNIETKIK----IPNNIPIKLANSNELVQHNMILSKIDKHSNGRCI 227
+ + N +I+ P + ++ + E H L+ I + ++G C
Sbjct: 182 SLDASAGDDTEQADNGGGLRIRRLSLSPGQLRVRQPDEAEWQAHRDKLAGI-REASGECR 240
Query: 228 W 228
W
Sbjct: 241 W 241
>gi|123441273|ref|YP_001005260.1| DNA polymerase III subunit epsilon [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|122088234|emb|CAL11023.1| DNA polymerase III, epsilon chain [Yersinia enterocolitica subsp.
enterocolitica 8081]
Length = 238
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 141/218 (64%), Gaps = 7/218 (3%)
Query: 18 DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDN 77
+GH+IIEIG VE+ NR++TG N H YI P R + A +HG++ +FL +K F++I
Sbjct: 9 EGHKIIEIGAVEVINRRLTGRNFHVYIKPDRLVDPEAYGVHGISDEFLADKPTFADITPE 68
Query: 78 FLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDTLLMARKIHTGKRNSL 136
FL ++ +E+IIHNAAFD+GF+D E +L T+ ITD+LL+AR++ GKRN+L
Sbjct: 69 FLEFIRGAELIIHNAAFDIGFMDYEFRMLQQDIPKTETFCTITDSLLLARRLFPGKRNNL 128
Query: 137 DALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF-----KPKINNSNNIETK 191
DALCDRY I RTLHG LLDAE+LAEVYLAMT GQ++L+F + + +S +I+
Sbjct: 129 DALCDRYQIDNTKRTLHGALLDAEILAEVYLAMTGGQTSLSFSMEGDQTQNESSEDIQRI 188
Query: 192 IKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + I A +E+ H L + K G C+W+
Sbjct: 189 TRPASGLKIIYATEDEIAAHESRLDLVMK-KGGSCLWR 225
>gi|339477842|ref|YP_004706662.1| DNA polymerase III subunit epsilon [Candidatus Moranella endobia
PCIT]
gi|338172393|gb|AEI74794.1| DNA polymerase III, epsilon subunit [Candidatus Moranella endobia
PCIT]
Length = 246
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 151/241 (62%), Gaps = 15/241 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG+N + GHRIIEIG VE+ NR++TG N H Y+ P R + A +H
Sbjct: 7 RQIILDTETTGMNKVGTHYQGHRIIEIGAVEVINRRLTGRNFHVYLKPDRLVDPEAFQVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSL--LGYSNFTKYIY 116
G++ FL +K F+ + D FL ++ SE++IHNA FD+GF+D E ++ LG + T+
Sbjct: 67 GISNDFLVDKPTFAAVADEFLQFIRGSELVIHNAPFDIGFMDYEFAMLKLGIAK-TETFC 125
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TD+L +ARK+ GKRNSLDALC+RY I K R LH LLDA++LA+++L MT GQ+ +
Sbjct: 126 KVTDSLRLARKMFPGKRNSLDALCERYMIDKSKRILHSALLDAKILADIFLLMTGGQTTM 185
Query: 177 NFKPKINNSN------NIETKIKIPNN-IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + N ++ +++ P + I A++ E+ H L + + G+C+W+
Sbjct: 186 RFAIEEEEWNINGGKIKLQQQVQQPKTALKIIYASNEEVSSHEQRLDLV-QQQGGKCLWR 244
Query: 230 K 230
+
Sbjct: 245 E 245
>gi|407691663|ref|YP_006816452.1| DNA polymerase III subunit epsilon [Actinobacillus suis H91-0380]
gi|407387720|gb|AFU18213.1| DNA polymerase III subunit epsilon [Actinobacillus suis H91-0380]
Length = 257
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/241 (44%), Positives = 146/241 (60%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG++ GH IIEIG VE+ NR++TG H YI P R+ E+ A+ +H
Sbjct: 8 RQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVEEEAIKVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYR 117
G+T +FL++K F+E+ D F+ ++ +E+IIHNA FDV F+D E S L T +
Sbjct: 68 GITNEFLQDKPVFAEVADEFIEFIKGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNL 176
+TD+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ + L
Sbjct: 128 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLIMTGGQLALL 187
Query: 177 NFKPKINNSNNIE-------TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ N NI TK + I ++L+ E H L IDK S G CIW
Sbjct: 188 GEEDASANHENITDLGLGTITKFETSGLIVLQLSE-EEQAAHEEYLKLIDKKSKGNCIWM 246
Query: 230 K 230
+
Sbjct: 247 R 247
>gi|294627921|ref|ZP_06706500.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|294666553|ref|ZP_06731794.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
gi|292597835|gb|EFF41993.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 11122]
gi|292603697|gb|EFF47107.1| DNA polymerase III subunit epsilon [Xanthomonas fuscans subsp.
aurantifolii str. ICPB 10535]
Length = 244
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 144/236 (61%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +GNN H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F E+VD FL Y+ +E+IIHNAAFD+GFLD EL+LLG ++ + + R T D
Sbjct: 62 EFLADKPLFGEVVDEFLAYIDGAELIIHNAAFDLGFLDNELALLG-DHYGRIVERATVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIGFAS 180
Query: 181 KINNSNN--------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +P P ++E H L+++ K + GR +W
Sbjct: 181 ADAGQQTDAASGMIAFDPALLLPR--PRVAVTASESQAHEARLAQLRKKA-GRALW 233
>gi|400406392|ref|YP_006589140.1| DNA polymerase III, epsilon subunit [secondary endosymbiont of
Heteropsylla cubana]
gi|400364645|gb|AFP85712.1| DNA polymerase III, epsilon subunit [secondary endosymbiont of
Heteropsylla cubana]
Length = 251
Score = 198 bits (503), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 110/239 (46%), Positives = 148/239 (61%), Gaps = 15/239 (6%)
Query: 3 RHIVLDIETTGLNI----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +V+D ETTG+N HRIIEIG VE+ NR+++G H Y+ P R E+ A IH
Sbjct: 7 RQVVMDTETTGMNKSGPHYKDHRIIEIGAVEVINRRLSGQYFHVYLQPDRLIEQEAFTIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G++ KFL +K FS+I D FL+++ +E+IIHNA FDVGF+D E SLL G Y
Sbjct: 67 GISDKFLADKPTFSDIADKFLDFIHGAELIIHNAPFDVGFIDYEFSLLNRGIPKIHTYC- 125
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITD+LL+ARKI GKRN+LDALCDRY I+K R HG LLDAE+LA+++L MT GQ+ +
Sbjct: 126 KITDSLLIARKIFPGKRNNLDALCDRYLINKSKRAHHGALLDAEILADIFLLMTGGQTTM 185
Query: 177 NFKPKINNSNNIETKIKIP------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F NIE K K + + EL H L+++ K + G+CIW+
Sbjct: 186 LFTED-KTLLNIEEKTKEKPVFRHLEALKVIYPTKEELFLHEQKLNQLQKKA-GKCIWR 242
>gi|32035046|ref|ZP_00135112.1| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
exonucleases [Actinobacillus pleuropneumoniae serovar 1
str. 4074]
gi|126208748|ref|YP_001053973.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
gi|126097540|gb|ABN74368.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 5b str. L20]
Length = 257
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 145/241 (60%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG++ GH IIEIG VE+ NR++TG H YI P R+ ++ A+ +H
Sbjct: 8 RQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVDEEAIKVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYIYR 117
G+T +FL++K F+E+ D F+ ++ +E+IIHNA FDV F+D E S LG T +
Sbjct: 68 GITNEFLQDKPVFAEVADEFIEFIKGAELIIHNAPFDVAFMDQEFSYLGNPPPKTAEMCS 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNL 176
+TD+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ + L
Sbjct: 128 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALL 187
Query: 177 NFKPKINNSNNIE-------TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ N+ TK + I + L+ E H L IDK S G CIW
Sbjct: 188 GEEDATATHENVADLGLGTITKFETSGLIVLSLSE-EEQTAHEEYLKLIDKKSKGNCIWM 246
Query: 230 K 230
+
Sbjct: 247 R 247
>gi|424795905|ref|ZP_18221710.1| DNA polymerase III epsilon chain [Xanthomonas translucens pv.
graminis ART-Xtg29]
gi|422795250|gb|EKU23975.1| DNA polymerase III epsilon chain [Xanthomonas translucens pv.
graminis ART-Xtg29]
Length = 245
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 145/237 (61%), Gaps = 17/237 (7%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +G N H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRVVEIGAVELLERRPSGRNFHRYLRPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K +F E+VD FL ++ +E+IIHNA+FD+GFLD ELS LG S + + + R T D
Sbjct: 62 EFLADKPEFHEVVDEFLAFIDGAELIIHNASFDLGFLDYELSRLGAS-YGRILDRATVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLLMAR+ G+RNSLDALC R + HR LHG LLDA++L+EVY+A+T GQ + F
Sbjct: 121 TLLMARERFPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILSEVYIALTSGQEEIGFAL 180
Query: 181 KINNSN---------NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ ++ T + P +P ++EL H L K+ K + GR +W
Sbjct: 181 ADERGSHAHGQRVAFDMATLLPRPRVLP----TASELDAHQARLEKLRKKA-GRALW 232
>gi|113460748|ref|YP_718815.1| DNA polymerase III subunit epsilon [Haemophilus somnus 129PT]
gi|170719139|ref|YP_001784286.1| DNA polymerase III subunit epsilon [Haemophilus somnus 2336]
gi|112822791|gb|ABI24880.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 129PT]
gi|168827268|gb|ACA32639.1| DNA polymerase III, epsilon subunit [Haemophilus somnus 2336]
Length = 252
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 142/236 (60%), Gaps = 8/236 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG+N +GH IIEIG VE+ NR+ TG LH YI P R + A+ +H
Sbjct: 9 RQIILDTETTGMNEFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPDRLVDPEAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K FS I F++++ +E+IIHNA FD+GF+D E ++ T I I
Sbjct: 69 GITDEMLADKPDFSAIAQEFIDFIKGAELIIHNAPFDIGFMDYEFKKHNFNINTADICLI 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GKRNSLDALCDR NI RTLHG LLDAE+L +VYLAMT GQ++L
Sbjct: 129 TDTLQMARQMYPGKRNSLDALCDRLNIDNSKRTLHGALLDAEILGDVYLAMTGGQTSLFG 188
Query: 177 --NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
P I NI +N + L E + H L +++ S C+W K
Sbjct: 189 DEEHTPIITLEENIHQHTTNTHNFKLLLPTEEEKLAHQDYLKLLNQKSKENCLWFK 244
>gi|350564776|ref|ZP_08933592.1| DNA polymerase III, epsilon subunit [Thioalkalimicrobium aerophilum
AL3]
gi|349777478|gb|EGZ31842.1| DNA polymerase III, epsilon subunit [Thioalkalimicrobium aerophilum
AL3]
Length = 235
Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 156/234 (66%), Gaps = 8/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG++ GHRIIEIG VE+ +R+ITG H YI+P R+ E+ A+ +HG+T
Sbjct: 2 RQIILDTETTGIDPKKGHRIIEIGAVEVIDRRITGAYYHQYIHPEREVEQEAIDVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI--YRITD 120
+FL +K F IV F+++V+ +E+IIHNA FDVGF++ EL+LL +++ K +ITD
Sbjct: 62 EFLTDKPLFKAIVSEFMDFVAGAELIIHNAPFDVGFINHELNLLQPNSWGKIEDHCKITD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR+++ G+R SLDALC R + +RTLHG LLDAE+LA+VYLAMT GQ +L+ K
Sbjct: 122 TLKMARRMYPGQRASLDALCKRLMVDNSNRTLHGALLDAEILADVYLAMTGGQVSLSLKN 181
Query: 181 KIN-NSNNIETKIK-----IPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ +S+++ ++ I + + + + +EL H L+++ K + W
Sbjct: 182 QHEAHSHSLTQQVATARADIIDQLKVIYPSDDELAAHQAYLAQLSKETKTEINW 235
>gi|37524935|ref|NP_928279.1| DNA polymerase III subunit epsilon [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784361|emb|CAE13238.1| DNA polymerase III epsilon chain [Photorhabdus luminescens subsp.
laumondii TTO1]
Length = 248
Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG+N + +GH+IIEIG VE+ NR++TG + H YI P R + A +H
Sbjct: 7 RQVVLDTETTGMNKLGVHYEGHKIIEIGAVEVINRRLTGRHFHVYIQPDRLVDPEAFEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ +FL++K F++I D F+ ++ +E+IIHNA FD+GF+D E L T +
Sbjct: 67 GISDEFLQDKPLFADIADEFIEFIRGAELIIHNAPFDIGFIDYEFGKLNRDIPPTADFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +AR + GKRN+LDALCDRY+I RTLHG LLDAE+L++VYL MT GQ++L
Sbjct: 127 ITDSLQLARGLFPGKRNNLDALCDRYDIDNSKRTLHGALLDAEILSDVYLIMTGGQTSLA 186
Query: 178 F--KPKINNSNNIE--TKIKIPN-NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + +I + N+ +I P + + A EL H L ++K G C+W+
Sbjct: 187 FSMEGEIASGANVSEIQRITRPQMALKVIYATDEELAAHESRLDLVEK-KGGSCLWR 242
>gi|170726953|ref|YP_001760979.1| DNA polymerase III subunit epsilon [Shewanella woodyi ATCC 51908]
gi|169812300|gb|ACA86884.1| DNA polymerase III, epsilon subunit [Shewanella woodyi ATCC 51908]
Length = 242
Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 152/235 (64%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R I+LD ETTG+N I GHRIIEIGCVE+ NR++TG + H YINP + ++ A+ +
Sbjct: 9 RQIILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQQIIDEEAIEV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIY 116
HG+T +F+ +K KF+E+ +F+ ++ +EI+ HNA FDV F+D E SLL T I
Sbjct: 69 HGITNEFVAHKPKFAEVAQSFIEFIDGAEIVAHNANFDVSFMDHEFSLLQPVGPKTADIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS-- 174
I DTL +A+ +H G++N+LDALC RY I R LHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 PILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYLMMTGGQTKF 188
Query: 175 NLNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
NL+ + + + S I + N + + A ++EL H L+ + K +G+CIW+
Sbjct: 189 NLSSEKEGSESGGIRRLSQSRNKLKVITATADELAMHEERLNLVAK--SGQCIWR 241
>gi|254876950|ref|ZP_05249660.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
ATCC 25015]
gi|254842971|gb|EET21385.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
ATCC 25015]
Length = 230
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 132/190 (69%), Gaps = 3/190 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R++TGNNLH+Y NP + E ALA+HGL
Sbjct: 1 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPNYEVEAGALAVHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F E VD ++++ +EIIIHNAAFDV F++ EL LL Y +++ +
Sbjct: 61 TNEFLADKPSFEENVDQMIDFLRGAEIIIHNAAFDVPFINWELGLLKNNKYGTLEQHVAK 120
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY+I HRT HG LLD+ELLA+VYLAMT GQ+NL
Sbjct: 121 IVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMTGGQTNLV 180
Query: 178 FKPKINNSNN 187
+ N S +
Sbjct: 181 LQTTKNASKD 190
>gi|365540520|ref|ZP_09365695.1| DNA polymerase III subunit epsilon [Vibrio ordalii ATCC 33509]
Length = 247
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 151/240 (62%), Gaps = 13/240 (5%)
Query: 2 HRHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N +GHRIIEIG VEI NR++TG + H Y+ P R+ + A+
Sbjct: 10 QRIVVLDTETTGMNREGGPHYEGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQLEAIE 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYI 115
IHG+T +FL +K ++ ++ FL+++ +E++ HNA FDVGF+D E L T+
Sbjct: 70 IHGITDEFLVDKPQYRDVHQEFLDFIKGAELVAHNAPFDVGFMDYEFRKLDAKIGKTEQY 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA++I GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKRIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSNNI---ETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
L F + ++ K + +K+ A ++EL H L ++K +G C+W++
Sbjct: 190 LQFNAGTRSDGSVGGESIKRAVAGRKKLKVLHACADELQAHQERLDLVEK--SGSCLWRQ 247
>gi|152995731|ref|YP_001340566.1| DNA polymerase III subunit epsilon [Marinomonas sp. MWYL1]
gi|150836655|gb|ABR70631.1| DNA polymerase III, epsilon subunit [Marinomonas sp. MWYL1]
Length = 237
Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 145/234 (61%), Gaps = 8/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG++ GHRIIEIGCVE+ R++T + H YINP R+ E+ A +HG++
Sbjct: 2 RQVVLDTETTGIDPKQGHRIIEIGCVEMIGRKLTNRHFHVYINPDREVEEEAFRVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F EI F +++ +E+IIHNA FD+GF+D E + +G T + + D+L
Sbjct: 62 EFLADKPRFHEIAQEFFDFIKGAELIIHNAPFDIGFMDHEFARIGGYPKTAEVCGVFDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK--- 179
+ ARK H G++N+LD LC RY I HR LHG LLD+E+LA+VYL MT GQ++L
Sbjct: 122 VYARKKHPGQKNNLDILCRRYGIDNSHRELHGALLDSEILADVYLLMTGGQTSLGLASSS 181
Query: 180 -PKINNSNNIETKIKIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ +E + + P + A+S EL H L IDK S G+ +W+
Sbjct: 182 ESESKEEGGVEEIRRFSADRPALKVIRASSEELKLHEERLDLIDKKS-GQSLWR 234
>gi|350572048|ref|ZP_08940358.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
wadsworthii 9715]
gi|349790750|gb|EGZ44652.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
wadsworthii 9715]
Length = 241
Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 143/230 (62%), Gaps = 3/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG G RI+E +E+K+RQ+TG++LH YI+P RD + ++ +HG+T
Sbjct: 5 RQIILDTETTGFKPNMGDRILEFAGIEMKSRQLTGSHLHLYIHPDRDIPEDSINVHGITL 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+ L+ + KF E+ +Y+ +E+IIHNA FDVGFLDME +G + +TDTL
Sbjct: 65 EKLEGEPKFEEVGQRIADYLRGAELIIHNAPFDVGFLDMEFQRMGLPTISGLGCTVTDTL 124
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MAR++ G++NSLDALC+R+ + + R HG L+D ELLAEVYL+MTRGQ +L +
Sbjct: 125 AMAREMFPGQKNSLDALCNRFEVDRSKRVFHGALIDCELLAEVYLSMTRGQFSL-VEDMA 183
Query: 183 NNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ I + +++ A++ EL +H L +DK G C W++
Sbjct: 184 EETEEISAARRAARPACLQVLHASAEELAEHEAYLDGLDKAVGGTCRWRE 233
>gi|257483794|ref|ZP_05637835.1| DNA polymerase III subunit epsilon, partial [Pseudomonas syringae
pv. tabaci str. ATCC 11528]
Length = 178
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 90/171 (52%), Positives = 127/171 (74%), Gaps = 4/171 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ + DGHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 9 RSIVLDTETTGMPVTDGHRIIEIGCVELIGRRLTGRHFHVYLQPDRESDEGAIGVHGITN 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY---SNFTKYIYRIT 119
+FL K +F+E+ D F ++ +++IIHNAAFDVGF++ E +L+G ++ T++ I
Sbjct: 69 EFLVGKPRFAEVADEFFEFIKGAQLIIHNAAFDVGFINNEFALMGSQDRADITQHC-SIL 127
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMT 170
DTL+MAR+ H G+RNSLDALC RY + R LHG LLD+E+LA+VYLAMT
Sbjct: 128 DTLMMARERHPGQRNSLDALCKRYGVDNSGRELHGALLDSEILADVYLAMT 178
>gi|165976701|ref|YP_001652294.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
gi|165876802|gb|ABY69850.1| DNA polymerase III epsilon chain [Actinobacillus pleuropneumoniae
serovar 3 str. JL03]
Length = 257
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 106/241 (43%), Positives = 145/241 (60%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG++ GH IIEIG VE+ NR++TG H YI P R+ E+ A+ +H
Sbjct: 8 RQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVEEEAIKVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYR 117
G+T +FL+++ F+E+ D F+ ++ +E+IIHNA FDV F+D E S L T +
Sbjct: 68 GITNEFLQDRPVFAEVADEFIEFIKGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNL 176
+TD+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ + L
Sbjct: 128 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALL 187
Query: 177 NFKPKINNSNNIE-------TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ N NI TK + I + L+ E H L IDK S G CIW
Sbjct: 188 GEEDASANHENIADLGLGTITKFETSGLIVLSLSE-EEQTAHEEYLKLIDKKSKGNCIWM 246
Query: 230 K 230
+
Sbjct: 247 R 247
>gi|374262772|ref|ZP_09621334.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
gi|363536824|gb|EHL30256.1| DNA polymerase III, epsilon subunit [Legionella drancourtii LLAP12]
Length = 232
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 105/227 (46%), Positives = 146/227 (64%), Gaps = 8/227 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ GHR+IEIGCVE+ +R++TG + H Y+NP R ++ A +HG++
Sbjct: 2 RQIVLDTETTGIGHEQGHRVIEIGCVELIDRKLTGRHFHVYLNPERLVDEGAFRVHGISD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F++ V FL +V +E+IIHNAAFD+GFL+ EL + + + + DTL
Sbjct: 62 EFLQDKPLFADKVSEFLQFVGGAELIIHNAAFDMGFLNSELRHVQWKKKLEDYCDVFDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR G+RNSLDALC R+ I +R LHG LLDAE+LA VYLAMT GQS+L F
Sbjct: 122 TYARDKFPGQRNSLDALCKRFGIDHFNRQLHGALLDAEILAFVYLAMTGGQSSL-FADVE 180
Query: 183 NNSNNIETKI------KIPNNIPIKLANSNELVQHNMILSKIDKHSN 223
N+NN K+ ++ N I + LA +NEL QH + + + K S
Sbjct: 181 ENANNTTVKVQEIAALRLANPIVV-LAEANELDQHQIFVEFLTKKSG 226
>gi|167856497|ref|ZP_02479211.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755]
gi|167852377|gb|EDS23677.1| 6-phosphogluconate dehydrogenase [Haemophilus parasuis 29755]
Length = 256
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 103/239 (43%), Positives = 145/239 (60%), Gaps = 11/239 (4%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG+N GH IIEIG VE+ NR++TG H YI P R+ E A+ +H
Sbjct: 8 RQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVEAEAMQVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYIYR 117
G+T + L +K F+EI D F+ ++ +E+IIHNA FDVGF+D E S L +
Sbjct: 68 GITNEMLADKPAFAEIADEFIEFIKGAELIIHNAPFDVGFIDHEFSFLPNPPEKVAQMCT 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL- 176
+TD+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ L
Sbjct: 128 VTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQIALI 187
Query: 177 ----NFKPKINNSNNIETKIKI-PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + K ++ + + I +N+ + + EL +H L I+K S G C+W +
Sbjct: 188 GEDEHEQAKTSSVEQVYQPLNIDTSNLIVLAPDEKELAEHLKYLELINKKSKGNCLWTR 246
>gi|389774774|ref|ZP_10192893.1| DNA polymerase III subunit epsilon [Rhodanobacter spathiphylli B39]
gi|388438373|gb|EIL95128.1| DNA polymerase III subunit epsilon [Rhodanobacter spathiphylli B39]
Length = 234
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/232 (43%), Positives = 146/232 (62%), Gaps = 6/232 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL + GHR++EI CVE+ R++TG + Y+NP R ++ A + G+
Sbjct: 2 RQIVLDTETTGLEVRQGHRLVEIACVEMVERRLTGRHYQTYLNPDRAIDEGARLVTGIED 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K +F E+V+ FL ++ +E+IIHNA+FD+GFLD EL+ LG + + R T D
Sbjct: 62 EFLLDKPRFPEVVEEFLAFIDGAELIIHNASFDIGFLDAELARLG-NGAGRIGDRCTVLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS--NLNF 178
TL MAR+ + G+RNSLDALC R + R LHGGL+DA+LLA+VYLAMT GQ +L F
Sbjct: 121 TLAMARERYPGQRNSLDALCKRLGVDNSRRDLHGGLIDAQLLADVYLAMTSGQVAFDLGF 180
Query: 179 KPKINNSNNIETKIKIPNNIPIKL-ANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + + + P L A+ ELV H L +DK + G +W+
Sbjct: 181 EGAAEQHDVMVVAPVVLHARPRVLHASPEELVLHEQRLDALDKSAGGVSVWR 232
>gi|90416118|ref|ZP_01224051.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
HTCC2207]
gi|90332492|gb|EAS47689.1| DNA polymerase III, epsilon subunit [gamma proteobacterium
HTCC2207]
Length = 239
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 102/234 (43%), Positives = 147/234 (62%), Gaps = 9/234 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL HRIIEIGCVE+ R++TG + H Y+NP R + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLETSQDHRIIEIGCVELVGRKLTGRHYHQYVNPQRKVDVGAMEVHGITD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYRITDT 121
+FL++K F + FL +V ++++IHNA FDVGF++ E++ L G + RI DT
Sbjct: 62 QFLEDKPLFETVAREFLEFVDGADLVIHNAPFDVGFINHEIAKLNGAYQAIESGCRIIDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF--- 178
L +AR+ H G++N+LDALC RY + R LHG LLDAE+LA+VYL MT GQ NLN
Sbjct: 122 LALARQKHPGQKNNLDALCKRYGVDNSQRDLHGALLDAEILADVYLLMTGGQVNLNISGQ 181
Query: 179 KPKINNSNNIETKIK--IPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
+ +N + I+ + P+++ A+ E+ +H L I+K S+G C+W
Sbjct: 182 QASDGGQDNSRSGIRRLAQDRQPLRVVTASREEIERHQQKLEAINK-SSGNCLW 234
>gi|260775260|ref|ZP_05884157.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
BAA-450]
gi|260608441|gb|EEX34606.1| DNA polymerase III epsilon subunit [Vibrio coralliilyticus ATCC
BAA-450]
Length = 246
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 104/239 (43%), Positives = 150/239 (62%), Gaps = 14/239 (5%)
Query: 3 RHIVLDIETTGLNI-----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N GHRIIEIG VEI NR++TG + H YI P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNREGGPHYQGHRIIEIGAVEIINRKLTGRHFHVYIKPDREIQPDAVEV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYI 115
HG+T +FL +K ++ ++ FL ++ +E++ HNA FD GF+D E ++L G Y
Sbjct: 71 HGITDEFLVDKPEYQDVHKEFLEFIKGAELVAHNAPFDTGFMDYEFNMLDPGIGKTDDYC 130
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 131 -KVTDTLAMAKKIFPGKRNNLDVLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNFKPKINNSN----NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
L F + N +I+ ++ + A ++EL H L ++K +G C+W++
Sbjct: 190 LQFNSGNADGNVGGESIKRAAGGRKSLKVIRATADELEAHQNRLDLVEK--SGSCLWRQ 246
>gi|289809670|ref|ZP_06540299.1| DNA polymerase III subunit epsilon [Salmonella enterica subsp.
enterica serovar Typhi str. AG3]
Length = 187
Score = 197 bits (500), Expect = 4e-48, Method: Compositional matrix adjust.
Identities = 95/178 (53%), Positives = 127/178 (71%), Gaps = 5/178 (2%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ++
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTS 187
>gi|92114064|ref|YP_573992.1| DNA polymerase III subunit epsilon [Chromohalobacter salexigens DSM
3043]
gi|91797154|gb|ABE59293.1| DNA polymerase III, epsilon subunit [Chromohalobacter salexigens
DSM 3043]
Length = 253
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 101/242 (41%), Positives = 146/242 (60%), Gaps = 17/242 (7%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ DGHR+IEIG VE+ NR++TGNN H YINP RD + A+ +HG+T
Sbjct: 2 RQIVLDTETTGIDPKDGHRLIEIGAVEVVNRRLTGNNYHQYINPERDIDPEAVEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--- 119
+ + ++ F++I D F Y+ +E++IHNAAFDVGF+D E LL + +
Sbjct: 62 ERVADEPVFADIADAFWEYIRGAELVIHNAAFDVGFIDHEFGLLHDKRGGPRLGPVADYC 121
Query: 120 ---DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
DTL MARK+H G+RN+LDALC RY I R LHG LLDAE+L++VYL MT GQ+ L
Sbjct: 122 SVLDTLAMARKLHPGQRNNLDALCKRYGIDNGRRVLHGALLDAEILSDVYLTMTGGQTAL 181
Query: 177 NFK-------PKINNSNNIETKIKIPN---NIPIKLANSNELVQHNMILSKIDKHSNGRC 226
+ + ++N++ ++ ++ + + E H L I + + G+C
Sbjct: 182 SLAGIEERAGDEGQDANSVSGIRRVSREGLSLAVTRPSEAEEAAHRAKLDSI-RQAAGQC 240
Query: 227 IW 228
W
Sbjct: 241 HW 242
>gi|15838748|ref|NP_299436.1| DNA polymerase III subunit epsilon [Xylella fastidiosa 9a5c]
gi|9107294|gb|AAF84956.1|AE004030_2 DNA polymerase III, epsilon chain [Xylella fastidiosa 9a5c]
Length = 239
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 148/233 (63%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL G+RI+EIG VE+ +R+++G+ H Y+ P E A + GLT
Sbjct: 6 RQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFESGAQEVTGLTM 65
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR--ITD 120
+FL +K +FS I D FL Y++ +E+IIHNAAFD+GFLD ELS LG S + K R + D
Sbjct: 66 EFLADKPEFSMIADEFLAYINGAELIIHNAAFDLGFLDYELSRLG-SQYGKITDRASVLD 124
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 125 TLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTSGQEEIGFAL 184
Query: 181 KINNSNNIETK--IKIPNNI---PIKLANSNELVQHNMILSKIDKHSNGRCIW 228
++ ++ +P+ + P + + +EL H L+K+ K + G +W
Sbjct: 185 PESSRGGVDAASVAFMPDVLLTRPCVVVSQSELEAHEARLAKLRKIA-GHVLW 236
>gi|240950342|ref|ZP_04754612.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305]
gi|240295153|gb|EER45972.1| DNA polymerase III subunit epsilon [Actinobacillus minor NM305]
Length = 253
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 150/239 (62%), Gaps = 11/239 (4%)
Query: 1 MHRHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
+HR +VLD ETTG+N GH IIEIG VE+ NR++TG H YI P R+ E+ A+
Sbjct: 6 IHRQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVEEEAIK 65
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYI 115
+HG+T +FL++K F+EIVD F+ ++ +E++IHNA FDVGF+D E S L T +
Sbjct: 66 VHGITNEFLQDKPTFAEIVDEFVAFIKGAELVIHNAPFDVGFMDHEFSFLANPPPKTAEM 125
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
+TD+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ
Sbjct: 126 CTVTDSLALARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQIA 185
Query: 176 LNFKPKINNSNNIETKIKIP------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
L + + + + ++ + P +N I A+ +EL H + L + K S CIW
Sbjct: 186 LLAEEEHDENPQVDLLEEGPKIAFDTSNSVILKADESELEAHQLFLKLLYKKSKKNCIW 244
>gi|389806660|ref|ZP_10203707.1| DNA polymerase III subunit epsilon [Rhodanobacter thiooxydans LCS2]
gi|388445312|gb|EIM01392.1| DNA polymerase III subunit epsilon [Rhodanobacter thiooxydans LCS2]
Length = 236
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 104/234 (44%), Positives = 148/234 (63%), Gaps = 7/234 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL + GHR++EI CVE+ R++TG + Y+NPGR ++ A + G+
Sbjct: 2 RQIVLDTETTGLEVRQGHRLVEIACVEMVERRLTGRHWQTYLNPGRAMDEGASQVTGIRD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR--ITD 120
+ L +K F++ VD FL +V +E++IHNA+FDVGFLD EL+ LG S + + R + D
Sbjct: 62 EHLVDKPLFADKVDEFLAFVDGAELVIHNASFDVGFLDAELARLGES-YGRIGDRCSVLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS--NLNF 178
TL MAR+ + G+RNSLDALC R + R LHGGL+DA+LLA+VYLAMT GQ +L F
Sbjct: 121 TLAMARERYPGQRNSLDALCKRLGVDNSRRDLHGGLIDAQLLADVYLAMTSGQVAFDLGF 180
Query: 179 KPKINNSNNIETKIKIPNNIPIKL-ANSNELVQHNMILSKIDKHS-NGRCIWKK 230
+ + + T + + P L A+ EL H L +DK S G+ +W++
Sbjct: 181 EGASEQLDVVVTAPMVLHARPQVLRASMEELSAHEQRLDALDKGSAEGQSVWRR 234
>gi|338999479|ref|ZP_08638122.1| DNA polymerase III subunit epsilon [Halomonas sp. TD01]
gi|338763628|gb|EGP18617.1| DNA polymerase III subunit epsilon [Halomonas sp. TD01]
Length = 250
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 91/191 (47%), Positives = 129/191 (67%), Gaps = 6/191 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG++ DGHR++EIG VE+ NR+ TG + H YINP R + +A+HG+
Sbjct: 2 RQVILDTETTGIDPKDGHRLVEIGAVEMINRRFTGRSYHQYINPERHIDAEVVAVHGIDD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI------Y 116
+ N+ F+EI D+F ++ +E++IHNA FDVGF+D EL++L + +
Sbjct: 62 AKVANEPVFAEIADDFWAFIEGAELVIHNAPFDVGFIDHELTMLNQRRRSPALGPVSDHC 121
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
RI DTL+MAR++H G+RNSLDALC RY+I HR LHG LLDAE+LA+VYLAMT GQ+ L
Sbjct: 122 RILDTLVMARQMHPGQRNSLDALCKRYDIDNGHRVLHGALLDAEILADVYLAMTGGQTAL 181
Query: 177 NFKPKINNSNN 187
+ ++
Sbjct: 182 TLDSEASSGEQ 192
>gi|21241847|ref|NP_641429.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
citri str. 306]
gi|418517016|ref|ZP_13083184.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
gi|418520585|ref|ZP_13086633.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|21107228|gb|AAM35965.1| DNA polymerase III epsilon chain [Xanthomonas axonopodis pv. citri
str. 306]
gi|410703470|gb|EKQ61961.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
malvacearum str. GSPB2388]
gi|410706229|gb|EKQ64691.1| DNA polymerase III subunit epsilon [Xanthomonas axonopodis pv.
malvacearum str. GSPB1386]
Length = 244
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 144/236 (61%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +GNN H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F E+VD FL Y+ +E+IIHNAAFD+GFLD EL+LLG ++ + + R T D
Sbjct: 62 EFLADKPLFGEVVDEFLAYIDGAELIIHNAAFDLGFLDNELALLG-DHYGRIVERATVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIGFAS 180
Query: 181 KINNSNN--------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +P P ++E H L+++ K + GR +W
Sbjct: 181 ADAGQQADAASGMIAFDPALLLPR--PRVAVTASESQAHEARLAQLRKKA-GRALW 233
>gi|417355786|ref|ZP_12131505.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353597940|gb|EHC54511.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
Length = 189
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 95/177 (53%), Positives = 126/177 (71%), Gaps = 5/177 (2%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186
>gi|84389766|ref|ZP_00991318.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
gi|84376867|gb|EAP93741.1| DNA polymerase III subunit epsilon [Vibrio splendidus 12B01]
Length = 255
Score = 196 bits (499), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 103/236 (43%), Positives = 147/236 (62%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IVLD ETTG+N G HRI+EIG VEI NR++TG + H YI P R ++ A+ +
Sbjct: 22 RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPDRAIQEEAIGV 81
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K ++ +I FL+++ +E++ HNA FD GF+D E L + T
Sbjct: 82 HGITDEFLIDKPEYQDIHKEFLDFIKGAELVAHNAPFDTGFMDYEFEKLNSAIGKTDDYC 141
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 142 KVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 201
Query: 177 NFKP--KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F K +I ++ + A ++E+ H L ++K +G C+W++
Sbjct: 202 QFNAGQKEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEK--SGSCLWRQ 255
>gi|303250637|ref|ZP_07336834.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|302650625|gb|EFL80784.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 257
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/241 (43%), Positives = 144/241 (59%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG++ GH IIEIG VE+ NR++TG H YI P R+ E+ A+ +H
Sbjct: 8 RQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVEEEAIKVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYR 117
G+T +FL++K F+E+ D F+ ++ +E+IIHNA FDV F+D E S L T +
Sbjct: 68 GITNEFLQDKPVFAEVADEFIEFIKGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNL 176
+TD+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ + L
Sbjct: 128 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALL 187
Query: 177 NFKPKINNSNNIE-------TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ N+ TK + I + L+ E H L IDK S G CIW
Sbjct: 188 GEEDATATHENVADLGLGTITKFETSGLIVLSLSE-EEQTAHEEYLKLIDKKSKGNCIWM 246
Query: 230 K 230
+
Sbjct: 247 R 247
>gi|219871037|ref|YP_002475412.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165]
gi|219691241|gb|ACL32464.1| DNA polymerase III subunit epsilon [Haemophilus parasuis SH0165]
Length = 256
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 146/239 (61%), Gaps = 11/239 (4%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG+N GH IIEIG VE+ NR++TG H YI P R+ + A+ +H
Sbjct: 8 RQVVLDTETTGMNFNGAPHIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVDAEAMQVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYIYR 117
G+T + L +K F+EI D F+ ++ +E+IIHNA FDVGF+D E S L +
Sbjct: 68 GITNEMLADKPAFAEIADEFIEFIKGAELIIHNAPFDVGFIDHEFSFLPNPPEKVAQMCT 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL- 176
+TD+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ L
Sbjct: 128 VTDSLQLARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQIALI 187
Query: 177 ----NFKPKINNSNNIETKIKI-PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + K +++ + + I +N+ + + EL +H L I+K S G C+W +
Sbjct: 188 GEDEHEQVKTSSAEQVYQPLTIDTSNLIVLAPDEKELAEHLKYLELINKKSKGNCLWTR 246
>gi|167627857|ref|YP_001678357.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
gi|167597858|gb|ABZ87856.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
philomiragia ATCC 25017]
Length = 230
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 97/190 (51%), Positives = 132/190 (69%), Gaps = 3/190 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R++TGNNLH+Y NP + E ALA+HGL
Sbjct: 1 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPNYEVEAGALAVHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F E VD ++++ +EIIIHNAAFDV F++ EL LL Y +++ +
Sbjct: 61 TNEFLADKPLFEENVDQMIDFLRGAEIIIHNAAFDVPFINWELGLLKNNKYGTLEQHVAK 120
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY+I HRT HG LLD+ELLA+VYLAMT GQ+NL
Sbjct: 121 IVDSLELARKKHPLQKNNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMTGGQTNLV 180
Query: 178 FKPKINNSNN 187
+ N S +
Sbjct: 181 LQTTKNASKD 190
>gi|417449875|ref|ZP_12162821.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|353637245|gb|EHC83110.1| DNA polymerase 3 epsilon subunit [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
Length = 191
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 95/177 (53%), Positives = 126/177 (71%), Gaps = 5/177 (2%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 10 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 69
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 70 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 129
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+
Sbjct: 130 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQT 186
>gi|149908875|ref|ZP_01897535.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
gi|149808149|gb|EDM68090.1| DNA polymerase III subunit epsilon [Moritella sp. PE36]
Length = 245
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 105/235 (44%), Positives = 143/235 (60%), Gaps = 13/235 (5%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IV D ETTG+N+ G HR+IEIGC+E+ NR+ TG H YI P R + A+A+
Sbjct: 14 RVIVFDTETTGMNMGAGGVHIGHRVIEIGCIELINRRPTGRTYHVYIKPDRLVDPEAIAV 73
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL++K F+ I D F+ ++ +E++ HNA+FD FLD E LL TK I
Sbjct: 74 HGITDEFLQDKPSFATIADEFIAFIVGAELVAHNASFDTNFLDHEFRLLNKGLPATKEIC 133
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ITDTL +A+K+ GKRN+LD LC RY I HRTLHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 134 KITDTLAIAKKLFPGKRNNLDVLCTRYGIDNSHRTLHGALLDAEILADVYLFMTGGQTKL 193
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
N NS + + P+K+ A +EL H+ L + G +W+
Sbjct: 194 NLSQDSANSQGGGIRRVAASRAPLKVVQATDDELKAHDERLGIV-----GDALWQ 243
>gi|157962223|ref|YP_001502257.1| DNA polymerase III subunit epsilon [Shewanella pealeana ATCC
700345]
gi|157847223|gb|ABV87722.1| DNA polymerase III, epsilon subunit [Shewanella pealeana ATCC
700345]
Length = 242
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 151/235 (64%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R I+LD ETTG+N I GHRIIEIGCVE+ NR++TG + H YINP + ++ A+A+
Sbjct: 9 RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRRLTGRHYHEYINPQQPIDEEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIY 116
HG+T +F+ +K KF E+ +F+ ++ +EI+ HNA FDV F+D E S+L T I
Sbjct: 69 HGITNEFVADKPKFHEVAQSFIEFIDGAEIVAHNANFDVSFMDHEFSMLQPLGPKTADIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS-- 174
+I D+L +A+ +H G++N+LDALC RY I R LHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 QILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYLLMTGGQTKF 188
Query: 175 NLNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
NL+ + I+ + + A+++EL++H L + K +G+C+W+
Sbjct: 189 NLSSEKAGQEGGGIQRLSADRTKLKVIAASADELIRHEERLDLVAK--SGQCLWR 241
>gi|163752245|ref|ZP_02159446.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
gi|161327875|gb|EDP99054.1| DNA polymerase III, epsilon subunit [Shewanella benthica KT99]
Length = 240
Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 146/233 (62%), Gaps = 8/233 (3%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R ++LD ETTG+N I GHRIIEIGCVE+ NR++TG + H YINP + ++ A+A+
Sbjct: 9 RQVILDTETTGMNQGAGAIFLGHRIIEIGCVEVINRRLTGRHYHEYINPQQLIDEEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG++ +++ NK KF+EI +F+ ++ +E++ HNA+FD+ F+D E LL T I
Sbjct: 69 HGISNEYVANKPKFAEIAQSFIEFIDGAEVVAHNASFDISFMDHEFGLLQPKGPKTADIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
I DTL +A+ +H G++N+LDALC RY I R LHG LLDAE+LA+VYL MT GQ+ L
Sbjct: 129 AILDTLAIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLLMTGGQTKL 188
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
N + I + + + A+++EL +H L + K G C W+
Sbjct: 189 NLSGDSGGAGGIIRLSQERTKLKVIAASADELAKHEARLDIVAK--GGLCAWR 239
>gi|374622737|ref|ZP_09695258.1| DNA polymerase III subunit epsilon [Ectothiorhodospira sp. PHS-1]
gi|373941859|gb|EHQ52404.1| DNA polymerase III subunit epsilon [Ectothiorhodospira sp. PHS-1]
Length = 239
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 96/194 (49%), Positives = 129/194 (66%), Gaps = 3/194 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTGL DGHRIIEIGCVE+ R+ T + H Y+ P R+ + A+ +HG+T
Sbjct: 8 RIVILDTETTGLEPSDGHRIIEIGCVEMVRRRHTSRHYHQYLQPDREVDAGAVEVHGITN 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIYRITD 120
+FL +K +F+++V++F+ +V SE+IIHNA FDVGF++ ELS L + Y ITD
Sbjct: 68 EFLADKPRFADVVEDFIEFVRGSELIIHNAPFDVGFINHELSRLDGDWGRLEDYCT-ITD 126
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
+L ARK+H G+RNSLDALC RY I R LHG LLDA +LAEVYLAMT GQ +L+
Sbjct: 127 SLATARKMHPGQRNSLDALCKRYQIDNSGRELHGALLDARILAEVYLAMTGGQKSLSLGM 186
Query: 181 KINNSNNIETKIKI 194
+ T +I
Sbjct: 187 ESEGQGGASTDTRI 200
>gi|71276291|ref|ZP_00652569.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
subunit [Xylella fastidiosa Dixon]
gi|170730488|ref|YP_001775921.1| DNA polymerase III subunit epsilon [Xylella fastidiosa M12]
gi|71162899|gb|EAO12623.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
subunit [Xylella fastidiosa Dixon]
gi|71731793|gb|EAO33852.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
subunit [Xylella fastidiosa subsp. sandyi Ann-1]
gi|167965281|gb|ACA12291.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
Length = 239
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 103/233 (44%), Positives = 148/233 (63%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL G+RI+EIG VE+ +R+++G+ H Y+ P E A + GLT
Sbjct: 6 RQIVLDTETTGLEWSKGNRIVEIGAVELLDRRLSGDKFHRYLKPDVSFESGAQEVTGLTM 65
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR--ITD 120
+FL +K +FS I D FL Y++ +E+IIHNAAFD+GFLD ELS LG S + K R + D
Sbjct: 66 EFLADKPEFSMIADEFLAYINGAELIIHNAAFDLGFLDYELSRLG-SQYGKITDRASVLD 124
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 125 TLVMARERYPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILADVYIALTCGQEEIGFAL 184
Query: 181 KINNSNNIETKIK--IPNNI---PIKLANSNELVQHNMILSKIDKHSNGRCIW 228
++ ++ +P+ + P + + +EL H L+K+ K + G +W
Sbjct: 185 PESSCGGVDAASAAFMPDVLLTRPCVVVSQSELEAHEARLAKLRKIA-GHVLW 236
>gi|381170428|ref|ZP_09879585.1| DNA polymerase III, epsilon subunit [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
gi|380689089|emb|CCG36072.1| DNA polymerase III, epsilon subunit [Xanthomonas citri pv.
mangiferaeindicae LMG 941]
Length = 244
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 144/236 (61%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +GNN H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F E+VD FL Y+ +E+IIHNAAFD+GFLD EL+LLG ++ + + R T D
Sbjct: 62 EFLADKPLFGEVVDEFLAYIDGAELIIHNAAFDLGFLDNELALLG-DHYGRIVERATVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIGFAS 180
Query: 181 KINNSNN--------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +P P ++E H L+++ K + GR +W
Sbjct: 181 ADAAQQADAASGMIAFDPALLLPR--PRVAVTASESQAHEARLAQLRKKA-GRALW 233
>gi|269101978|ref|ZP_06154675.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
damselae CIP 102761]
gi|268161876|gb|EEZ40372.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
damselae CIP 102761]
Length = 241
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 149/236 (63%), Gaps = 11/236 (4%)
Query: 3 RHIVLDIETTGLNI----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IV D ETTG+N+ +GHRIIEIG VEI NR++TGN H YI P R + A+ +H
Sbjct: 7 RIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPDRAIDPEAIEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIYR 117
G+T +FL K ++EI F++++ +E++ HNA FD+GF+D E LG + T + +
Sbjct: 67 GITDEFLVGKPTYAEIHQEFMDFIQGAELVAHNAPFDIGFMDYEFRKLGLKDLKTDEMCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TDTL MA+++ GKRN+LD LC RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 127 VTDTLDMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLMMTGGQTSLQ 186
Query: 178 FKPKINNSNNIETKIKIPNN----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+++ E +I+ + + + A+++E+ H L I K ++ IW+
Sbjct: 187 LSSGESSAAGAENEIRRLTSGRKALKVIRASADEIAAHEDRLDLIGKKAD--VIWR 240
>gi|352085695|ref|ZP_08953286.1| DNA polymerase III, epsilon subunit [Rhodanobacter sp. 2APBS1]
gi|389798011|ref|ZP_10201039.1| DNA polymerase III subunit epsilon [Rhodanobacter sp. 116-2]
gi|351681636|gb|EHA64760.1| DNA polymerase III, epsilon subunit [Rhodanobacter sp. 2APBS1]
gi|388445906|gb|EIM01959.1| DNA polymerase III subunit epsilon [Rhodanobacter sp. 116-2]
Length = 235
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 149/235 (63%), Gaps = 9/235 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL + GHR++EI CVE+ R++TG + Y+NP R ++ A + G+
Sbjct: 2 RQIVLDTETTGLEVRQGHRLVEIACVELVERRLTGRHYQTYLNPDRAIDEGARLVTGIED 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI---YRIT 119
+FL +K +F+E+ + FL ++ +E+IIHNA+FD+GFLD EL+ LG N I +
Sbjct: 62 EFLLDKPRFAEVAEEFLAFIDGAELIIHNASFDIGFLDAELARLG--NAAGRIGDRCSVL 119
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS--NLN 177
DTL MAR+ + G+RNSLDALC R + R LHGGL+DA+LLA+VYLAMT GQ +L
Sbjct: 120 DTLAMARERYPGQRNSLDALCKRLGVDNSRRDLHGGLIDAQLLADVYLAMTSGQVAFDLG 179
Query: 178 FKPKINNSNNIETKIKIPNNIPIKL-ANSNELVQHNMILSKIDKHS-NGRCIWKK 230
F+ + + + + P L A++ E+ H L+ +DK S +G+ +W++
Sbjct: 180 FEGAAEQRDVMVMVPAVLHARPRVLRASAEEISAHEQRLAALDKSSADGQSVWRR 234
>gi|254468292|ref|ZP_05081698.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
gi|207087102|gb|EDZ64385.1| DNA polymerase III, epsilon subunit [beta proteobacterium KB13]
Length = 219
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 101/219 (46%), Positives = 137/219 (62%), Gaps = 1/219 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL+ GHRIIEI VE+ NRQ+T N H YINP R+ +++A +HGLT
Sbjct: 2 RQIFLDTETTGLDPAQGHRIIEIAAVEMINRQVTNNQFHVYINPEREIDEAAQEVHGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F I + F++++++SE+IIHNA FD+GFL+MEL + Y ITD+L
Sbjct: 62 EFLSDKPGFESISEKFISFIADSELIIHNAPFDIGFLNMELGRIKKGVVEDYAEVITDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+MAR++ G+RN+LDALC Y + R LHG LLD+ LLAEV++ MTRGQ L
Sbjct: 122 VMARELRPGQRNNLDALCRHYGVDNSERNLHGALLDSLLLAEVFIGMTRGQEALEIDFNN 181
Query: 183 NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKH 221
+I+ I N + + A+ EL H L K KH
Sbjct: 182 QEKLSIDFDKDILNKLKVVSASQEELELHQEYLKKF-KH 219
>gi|78485275|ref|YP_391200.1| DNA polymerase III subunit epsilon [Thiomicrospira crunogena XCL-2]
gi|78363561|gb|ABB41526.1| DNA polymerase III, epsilon subunit [Thiomicrospira crunogena
XCL-2]
Length = 231
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 105/230 (45%), Positives = 147/230 (63%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG + +G +IIEIG VE+ R++T NN H YI P RD A+ +HG+T
Sbjct: 2 RQILLDTETTGFDPKNGDKIIEIGAVELIKRKLTHNNYHQYIQPERDVPIDAIEVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI--YRITD 120
+FL K F+++VD+F+ YV+ +E+IIHNA FDVGF++ ELS L + + K ITD
Sbjct: 62 EFLVGKPIFADVVDDFMEYVAGAELIIHNAPFDVGFINQELSQLPNNKWGKIEDHCTITD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
+L MARK + G+RNSLDALC R+ I +RTLHG LLD+E+LA+VYLAMT GQ+ L
Sbjct: 122 SLKMARKAYPGQRNSLDALCKRFLIDNSNRTLHGALLDSEILADVYLAMTGGQTALILAD 181
Query: 181 KINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
+ +S++ P+K+ A++ EL HN L +I + W
Sbjct: 182 EEGSSSDASRVNLNTQRAPLKVLKASAEELAAHNGKLQQISEKCGDTITW 231
>gi|421531375|ref|ZP_15977786.1| DNA polymerase III subunit epsilon [Pseudomonas putida S11]
gi|402211187|gb|EJT82673.1| DNA polymerase III subunit epsilon [Pseudomonas putida S11]
Length = 263
Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 126/178 (70%), Gaps = 2/178 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG+ + +GHRIIEIGCVE+ R++TG + H Y+ P R+S++ A+ +HG+T
Sbjct: 8 RFVILDTETTGMPVSEGHRIIEIGCVEVIGRRLTGRHFHVYLQPDRESDEGAINVHGITD 67
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
FL K +F ++ + F ++ + ++IHNAAFDVGF++ E +LLG + T D
Sbjct: 68 AFLVGKPRFGDVAEEFFEFIQGATLVIHNAAFDVGFINNEFALLGQQDRADISQHCTILD 127
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TLL+AR H G+RNSLDALC RY+I R LHG LLD+ELLA+VYLAMT GQ++L+
Sbjct: 128 TLLLARARHPGQRNSLDALCKRYDIDNSGRELHGALLDSELLADVYLAMTGGQTSLSL 185
>gi|307261758|ref|ZP_07543424.1| hypothetical protein appser12_13170 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
gi|306868576|gb|EFN00387.1| hypothetical protein appser12_13170 [Actinobacillus
pleuropneumoniae serovar 12 str. 1096]
Length = 248
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 145/239 (60%), Gaps = 14/239 (5%)
Query: 5 IVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+VLD ETTG++ GH IIEIG VE+ NR++TG H YI P R+ ++ A+ +HG+
Sbjct: 1 MVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVDEEAIKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYIYRIT 119
T +FL++K F+E+ D F+ ++ +E+IIHNA FDV F+D E S LG T + +T
Sbjct: 61 TNEFLQDKPVFAEVADEFIEFIKGAELIIHNAPFDVAFMDQEFSYLGNPPPKTAEMCSVT 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNLNF 178
D+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ + L
Sbjct: 121 DSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALLGE 180
Query: 179 KPKINNSNNIE-------TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N NI TK + I + L+ E H L IDK S G CIW +
Sbjct: 181 EDASANHENIADLGLGTITKFETSGLIVLSLSE-EEQTAHEEYLKLIDKKSKGNCIWMR 238
>gi|440731344|ref|ZP_20911369.1| DNA polymerase III subunit epsilon [Xanthomonas translucens
DAR61454]
gi|440373306|gb|ELQ10065.1| DNA polymerase III subunit epsilon [Xanthomonas translucens
DAR61454]
Length = 246
Score = 196 bits (497), Expect = 9e-48, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 145/237 (61%), Gaps = 17/237 (7%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +G N H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRVVEIGAVELLERRPSGRNFHRYLRPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K +F E+VD FL ++ +E+IIHNA+FD+GFLD ELS LG S + + + R T D
Sbjct: 62 EFLADKPEFHEVVDEFLAFIDGAELIIHNASFDLGFLDNELSRLGTS-YGRILDRATVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TLL+AR+ G+RNSLDALC R + HR LHG LLDA++L+EVY+A+T GQ + F
Sbjct: 121 TLLLARERFPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILSEVYIALTSGQEEIGFAL 180
Query: 181 KINNSN---------NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ ++ T + P +P ++EL H L K+ K + GR +W
Sbjct: 181 ADERGSHAHGQRVAFDMATLLPRPRVLP----TASELDAHQARLEKLRKKA-GRAVW 232
>gi|294670031|ref|ZP_06734988.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
gi|291308152|gb|EFE49395.1| DNA polymerase III, epsilon subunit [Neisseria elongata subsp.
glycolytica ATCC 29315]
Length = 244
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 144/233 (61%), Gaps = 6/233 (2%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
R I+LD ETTGL G R++E +E+K RQ+T NNLH YI+P RD + A A+HG+T
Sbjct: 4 ERQIILDTETTGLYADRGDRMLEFAGIEMKKRQLTMNNLHLYIHPDRDIPEEAAAVHGIT 63
Query: 62 TKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
+ L +N KF ++ +++ +E+IIHNA FDVGFL+ME + +G + + IT
Sbjct: 64 LEQLEERNAPKFEQVGRQIADFLRGAELIIHNARFDVGFLNMEFARMGLPSIEELDCEIT 123
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-NF 178
DTL MAR+ G++ SLDALC R ++ + R LHG L+D ELLAEVYLAMTR Q +L
Sbjct: 124 DTLAMAREKFPGQKASLDALCSRLDVDRSKRVLHGALIDCELLAEVYLAMTREQFDLVGA 183
Query: 179 KPKINNSNNIETKIKIP---NNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + + +T I + + I A++ E H L+++DK S G+C+W
Sbjct: 184 EETAAAAQSADTGIAVQTAGGGLRILRADAEETAAHLEYLAELDKASGGQCLW 236
>gi|167623805|ref|YP_001674099.1| DNA polymerase III subunit epsilon [Shewanella halifaxensis
HAW-EB4]
gi|167353827|gb|ABZ76440.1| DNA polymerase III, epsilon subunit [Shewanella halifaxensis
HAW-EB4]
Length = 242
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 151/235 (64%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R I+LD ETTG+N I GHRIIEIGCVE+ NR++TG + H YINP + ++ A+A+
Sbjct: 9 RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQQPIDEEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG+T +F+ +K KF EI +F+ ++ +EI+ HNA FDV F+D E S+L T I
Sbjct: 69 HGITNEFVADKPKFHEIAQSFIEFIDGAEIVAHNANFDVSFMDHEFSMLQPRGPKTADIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS-- 174
+I D+L +A+ +H G++N+LDALC RY I R LHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 QILDSLAIAKHLHPGQKNNLDALCKRYGIDNSARDLHGALLDAEILADVYLLMTGGQTKF 188
Query: 175 NLNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
NL+ + I + + + A+++EL++H L + K +G+C+W+
Sbjct: 189 NLSSEKAGQEGGGIHRLSADRSKLKVIAASADELIRHEERLDLVAK--SGQCLWR 241
>gi|56707679|ref|YP_169575.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110670150|ref|YP_666707.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis FSC198]
gi|134301975|ref|YP_001121944.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis WY96-3418]
gi|254370187|ref|ZP_04986193.1| DNA polymerase III [Francisella tularensis subsp. tularensis
FSC033]
gi|254874491|ref|ZP_05247201.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|379716933|ref|YP_005305269.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis TIGB03]
gi|379725537|ref|YP_005317723.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis TI0902]
gi|385794308|ref|YP_005830714.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis NE061598]
gi|421751785|ref|ZP_16188823.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis AS_713]
gi|421753639|ref|ZP_16190629.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis 831]
gi|421755174|ref|ZP_16192126.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis 80700075]
gi|421757365|ref|ZP_16194246.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis 80700103]
gi|421759224|ref|ZP_16196057.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis 70102010]
gi|424674543|ref|ZP_18111460.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis 70001275]
gi|56604171|emb|CAG45181.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
tularensis SCHU S4]
gi|110320483|emb|CAL08564.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
tularensis FSC198]
gi|134049752|gb|ABO46823.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
tularensis WY96-3418]
gi|151568431|gb|EDN34085.1| DNA polymerase III [Francisella tularensis subsp. tularensis
FSC033]
gi|254840490|gb|EET18926.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
tularensis MA00-2987]
gi|282158843|gb|ADA78234.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
tularensis NE061598]
gi|377826986|gb|AFB80234.1| DNA polymerase III epsilon subunit [Francisella tularensis subsp.
tularensis TI0902]
gi|377828610|gb|AFB78689.1| DNA polymerase III epsilon subunit [Francisella tularensis subsp.
tularensis TIGB03]
gi|409086512|gb|EKM86629.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis 831]
gi|409086719|gb|EKM86833.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis AS_713]
gi|409088893|gb|EKM88950.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis 80700075]
gi|409090950|gb|EKM90955.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis 70102010]
gi|409092631|gb|EKM92600.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis 80700103]
gi|417434829|gb|EKT89768.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
tularensis 70001275]
Length = 230
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 135/196 (68%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R+ITGNNLH+Y NP + E ALAIHGL
Sbjct: 1 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAGALAIHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD + ++ +E+IIHNAAFDV F++ ELSLL Y + + +
Sbjct: 61 TNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVAK 120
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 121 IVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNLS 180
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ +
Sbjct: 181 LQTAKTVSKNSIDIDV 196
>gi|62261930|gb|AAX78030.1| unknown protein [synthetic construct]
Length = 265
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 135/196 (68%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R+ITGNNLH+Y NP + E ALAIHGL
Sbjct: 27 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAGALAIHGL 86
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD + ++ +E+IIHNAAFDV F++ ELSLL Y + + +
Sbjct: 87 TNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVAK 146
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 147 IVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNLS 206
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ +
Sbjct: 207 LQTAKTVSKNSIDIDV 222
>gi|343496843|ref|ZP_08734930.1| DNA polymerase III subunit epsilon [Vibrio nigripulchritudo ATCC
27043]
gi|342820636|gb|EGU55455.1| DNA polymerase III subunit epsilon [Vibrio nigripulchritudo ATCC
27043]
Length = 246
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/239 (42%), Positives = 146/239 (61%), Gaps = 12/239 (5%)
Query: 2 HRHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
R +VLD ETTG+N G HRIIEIG VEI NR++TG + H Y+ P RD + A+
Sbjct: 10 QRIVVLDTETTGMNRESGPHYLDHRIIEIGAVEIVNRKLTGKHFHVYLKPDRDIQPDAIL 69
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYI 115
+HG+T +FL +K ++ ++ FL ++ +E++ HNA FDVGF+D E L + T+
Sbjct: 70 VHGITDEFLVDKPEYRDVHKEFLEFIDGAELVAHNAPFDVGFMDYEFEKLDPTIGKTEQY 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ+
Sbjct: 130 CKVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTT 189
Query: 176 LNFKPKINNSNNIETKIKI----PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
L F IK ++ + A+++E+ H L ++K G C+W++
Sbjct: 190 LKFNSDEQGDGGTGEAIKRVTSGRKSLKVIRASADEIEAHGARLDIVEK--AGACLWRQ 246
>gi|54114497|gb|AAV29882.1| NT02FT1179 [synthetic construct]
Length = 230
Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 135/196 (68%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R+ITGNNLH+Y NP + E ALAIHGL
Sbjct: 1 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAGALAIHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD + ++ +E+IIHNAAFDV F++ ELSLL Y + + +
Sbjct: 61 TNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVAK 120
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 121 IVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNLS 180
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ +
Sbjct: 181 LQTAKTVSKNSIDIDV 196
>gi|118497560|ref|YP_898610.1| DNA polymerase III subunit epsilon [Francisella novicida U112]
gi|195536256|ref|ZP_03079263.1| DNA polymerase III, epsilon subunit [Francisella novicida FTE]
gi|118423466|gb|ABK89856.1| DNA polymerase III, epsilon subunit [Francisella novicida U112]
gi|194372733|gb|EDX27444.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
novicida FTE]
Length = 230
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 135/196 (68%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R+ITGNNLH+Y NP + E ALAIHGL
Sbjct: 1 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAGALAIHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD + ++ +E+IIHNAAFDV F++ ELSLL Y + + +
Sbjct: 61 TNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVAK 120
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 121 IVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNLS 180
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ +
Sbjct: 181 LQTAKTVSKNSIDIDV 196
>gi|58580665|ref|YP_199681.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|84622598|ref|YP_449970.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
MAFF 311018]
gi|384418143|ref|YP_005627503.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv.
oryzicola BLS256]
gi|58425259|gb|AAW74296.1| DNA polymerase III epsilon chain [Xanthomonas oryzae pv. oryzae
KACC 10331]
gi|84366538|dbj|BAE67696.1| DNA polymerase III epsilon chai [Xanthomonas oryzae pv. oryzae MAFF
311018]
gi|353461057|gb|AEQ95336.1| DNA polymerase III, epsilon subunit [Xanthomonas oryzae pv.
oryzicola BLS256]
Length = 244
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 143/236 (60%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +GNN H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F E+V+ FL Y+ +E+IIHNAAFD+GFLD EL+LLG ++ + + R T D
Sbjct: 62 EFLADKPLFGEVVEEFLAYIDGAELIIHNAAFDLGFLDNELALLG-DHYGRIVERATVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIGFAS 180
Query: 181 KINNSNN--------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +P P ++E H L ++ K + GR +W
Sbjct: 181 ADAGQQTDAASGMIAFDPALLLPR--PRVAVTASESQAHEARLVQLRKKA-GRALW 233
>gi|390990698|ref|ZP_10260979.1| DNA polymerase III, epsilon subunit [Xanthomonas axonopodis pv.
punicae str. LMG 859]
gi|372554551|emb|CCF67954.1| DNA polymerase III, epsilon subunit [Xanthomonas axonopodis pv.
punicae str. LMG 859]
Length = 244
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 143/236 (60%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +GNN H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F E+ D FL Y+ +E+IIHNAAFD+GFLD EL+LLG ++ + + R T D
Sbjct: 62 EFLADKPLFGEVADEFLAYIDGAELIIHNAAFDLGFLDNELALLG-DHYGRIVERATVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIGFAS 180
Query: 181 KINNSNN--------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +P P ++E H L+++ K + GR +W
Sbjct: 181 ADAGQQADAASGMIAFDPALLLPR--PRVAVTASESQAHEARLAQLRKKA-GRALW 233
>gi|218710290|ref|YP_002417911.1| DNA polymerase III subunit epsilon [Vibrio splendidus LGP32]
gi|218323309|emb|CAV19486.1| DNA polymerase III, epsilon subunit [Vibrio splendidus LGP32]
Length = 255
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 147/236 (62%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IVLD ETTG+N G HRI+EIG VEI NR++TG + H YI P R ++ A+ +
Sbjct: 22 RIIVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPDRAIQEEAIGV 81
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K ++ +I FL+++ +E++ HNA FD GF+D E L + T
Sbjct: 82 HGITDEFLIDKPEYQDIHKEFLDFIKGAELVAHNAPFDTGFMDYEFEKLNPAIGKTDDYC 141
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 142 KVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 201
Query: 177 NFKP--KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F + +I ++ + A ++E+ H L ++K +G C+W++
Sbjct: 202 QFNAGQQEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEK--SGSCLWRQ 255
>gi|358410584|gb|AEU09982.1| DNA polymerase III epsilon subunit [Photobacterium damselae subsp.
piscicida]
Length = 241
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 149/236 (63%), Gaps = 11/236 (4%)
Query: 3 RHIVLDIETTGLNI----IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IV D ETTG+N+ +GHRIIEIG VEI NR++TGN H YI P R + A+ +H
Sbjct: 7 RIIVFDTETTGMNMSGPHYEGHRIIEIGAVEIINRKLTGNTFHVYIKPDRAIDPEAIEVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIYR 117
G+T +FL K ++EI F++++ +E++ HNA FD+GF+D E LG + T + +
Sbjct: 67 GITDEFLVGKPTYAEIHQEFMDFIQGAELVAHNAPFDIGFMDYEFRKLGLKDLKTDEMCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TDTL MA+++ GKRN+LD LC RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 127 VTDTLDMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLMMTGGQTSLQ 186
Query: 178 FKPKINNSNNIETKIKIPNN----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+++ E +I+ + + + ++++E+ H L I K ++ IW+
Sbjct: 187 LSSGESSAAGAENEIRRLTSGRKALKVVRSSADEITAHEGRLDLIGKKAD--VIWR 240
>gi|387770612|ref|ZP_10126791.1| DNA polymerase III, epsilon subunit [Pasteurella bettyae CCUG 2042]
gi|386903978|gb|EIJ68777.1| DNA polymerase III, epsilon subunit [Pasteurella bettyae CCUG 2042]
Length = 258
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/240 (42%), Positives = 145/240 (60%), Gaps = 10/240 (4%)
Query: 1 MHRHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
++R IVLD ETTG+N +GH IIEIG VE+ NR+ TG LH YI P R + A+
Sbjct: 7 LNRQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGKKLHLYIKPDRPVDPEAIK 66
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY 116
+HG+T + L +K F+E+ F++++ +E++IHNA FDVGF+D E T I
Sbjct: 67 VHGITDEMLSDKPDFTEVAQEFIDFIKGAELLIHNAPFDVGFMDYEFRKHQIDVKTSDIC 126
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+TDTL +AR+++ GKRNSLDALCDR I R LHG LLDAE+L +VYLAMT GQ++L
Sbjct: 127 TVTDTLQLARQMYPGKRNSLDALCDRLAIDNTKRVLHGALLDAEILGDVYLAMTGGQTSL 186
Query: 177 -----NFKPKINNSNNIETKI-KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P + ++ I+ K + + + EL H + I+K S C+W+K
Sbjct: 187 FDDHETDEPIMASTQAIQQTFEKTKHKLSTLQPSEQELAAHLEYIKLINKKSKDNCLWEK 246
>gi|90581658|ref|ZP_01237447.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
gi|90437142|gb|EAS62344.1| DNA polymerase III subunit epsilon [Vibrio angustum S14]
Length = 241
Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 102/237 (43%), Positives = 147/237 (62%), Gaps = 11/237 (4%)
Query: 2 HRHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IV D ETTG+N+ +GHRIIEIG VEI NR++TG H YI P R + A+ +
Sbjct: 6 QRIIVFDTETTGMNMTGPHYEGHRIIEIGAVEIINRKLTGKTFHVYIKPDRPIDPEAIDV 65
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL K +++I F++++ +E++ HNA+FD+GF+D E L+G T+ I
Sbjct: 66 HGITDEFLIGKPSYADIHQEFIDFIDGAELVAHNASFDIGFMDYEFQLMGSDLKKTEDIC 125
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+++ GKRN+LD LC RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 126 KVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLMMTGGQTSL 185
Query: 177 NFKPKINNSNNIETKIK----IPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ E IK + + A+++ELV H L I K ++ +W+
Sbjct: 186 KLSGDDEGDSEKEFAIKRLVSERKGLKVICASADELVSHEERLDLIGKKTD--VLWR 240
>gi|190150601|ref|YP_001969126.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|303252089|ref|ZP_07338258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
gi|189915732|gb|ACE61984.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 7 str. AP76]
gi|302649071|gb|EFL79258.1| DNA polymerase III subunit epsilon [Actinobacillus pleuropneumoniae
serovar 2 str. 4226]
Length = 257
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 104/241 (43%), Positives = 144/241 (59%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R +VLD ETTG++ GH IIEIG VE+ NR++TG H YI P R+ ++ A+ +H
Sbjct: 8 RQVVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVDEEAIKVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYR 117
G+T +FL++K F+E+ D F+ ++ +E+IIHNA FDV F+D E S L T +
Sbjct: 68 GITNEFLQDKPVFAEVADEFIEFIKGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCS 127
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNL 176
+TD+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ + L
Sbjct: 128 VTDSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALL 187
Query: 177 NFKPKINNSNNIE-------TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ N+ TK + I + L+ E H L IDK S G CIW
Sbjct: 188 GEEDATATHENVADLGLGTITKFETSGLIVLSLSE-EEQTAHEEYLKLIDKKSKGNCIWM 246
Query: 230 K 230
+
Sbjct: 247 R 247
>gi|244539322|dbj|BAH83365.1| DNA polymerase III subunit epsilon [Candidatus Ishikawaella
capsulata Mpkobe]
Length = 241
Score = 195 bits (495), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 161/236 (68%), Gaps = 9/236 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG+N + +GHRIIEI VEI NR+ITGN+ H Y+NP R + A IH
Sbjct: 7 RQIILDTETTGINTMGIHYEGHRIIEIAAVEIINRKITGNSFHTYVNPNRSVDSEAFHIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G++ KFL +K FSEI D F+ Y+ +E+IIHNA+FD+GF++ E ++L + + + +
Sbjct: 67 GISDKFLADKPTFSEIADKFIKYIKGTELIIHNASFDIGFINNEFTILNLAVGKIENLCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L++ARKI GKRNSLDALC RY I R LHG L+DA++LA+VYLAMT GQ+ ++
Sbjct: 127 IIDSLILARKIFPGKRNSLDALCSRYKIDNKQRELHGALIDAKILAKVYLAMTSGQTLID 186
Query: 178 FKP--KINN-SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F ++N+ +NN +T I +++ + AN EL+ H L I + S+G C+W+K
Sbjct: 187 FSSHNELNSFTNNNKTIIPQLSSLIVIKANEKELLAHESQLDIITQ-SSGNCLWRK 241
>gi|456738239|gb|EMF62916.1| DNA polymerase III epsilon subunit [Stenotrophomonas maltophilia
EPM1]
Length = 243
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/235 (45%), Positives = 143/235 (60%), Gaps = 13/235 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+RI+EIGCVE+ R+ TGNN H YI P + E+ A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K +F++I D FL ++ +E+IIHNAAFD+GFLD ELSLLG + K R T D
Sbjct: 62 EFLDDKPEFAQIADEFLAFIDGAELIIHNAAFDLGFLDNELSLLG-PQYGKITDRCTVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---- 176
TL MAR+ G+RNSLDALC R + HR LHGGLLDA++L +VY+A+T GQ +
Sbjct: 121 TLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIGFGL 180
Query: 177 ---NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ +T +P P +A +EL H L ++ K + G +W
Sbjct: 181 GEEDGGGAGAALQAFDTSKLLPR--PRVVATPSELEAHAARLERLRKKA-GHALW 232
>gi|27365234|ref|NP_760762.1| DNA polymerase III subunit epsilon [Vibrio vulnificus CMCP6]
gi|37680713|ref|NP_935322.1| DNA polymerase III subunit epsilon [Vibrio vulnificus YJ016]
gi|320155618|ref|YP_004187997.1| DNA polymerase III subunit epsilon [Vibrio vulnificus MO6-24/O]
gi|27361381|gb|AAO10289.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus CMCP6]
gi|37199462|dbj|BAC95293.1| DNA polymerase III, epsilon subunit [Vibrio vulnificus YJ016]
gi|319930930|gb|ADV85794.1| DNA polymerase III epsilon subunit [Vibrio vulnificus MO6-24/O]
Length = 243
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 103/240 (42%), Positives = 151/240 (62%), Gaps = 19/240 (7%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N G HRIIEIG VEI NR++TG + H Y+ P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQPDAIDV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K ++ ++ FL ++ +E++ HNA FDVGF+D E L + T
Sbjct: 71 HGITDQFLVDKPEYRQVHQEFLEFIKGAELVAHNAPFDVGFMDYEFGKLDAAIGKTDDYC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NFKPKINNSNNIE------TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F N+N+ E ++ ++ + A ++EL H L ++K +G C+W++
Sbjct: 191 EF-----NANSQEGGGEDIRRVAGRKSLKVLRATADELEAHQSRLDIVEK--SGTCLWRQ 243
>gi|152978551|ref|YP_001344180.1| DNA polymerase III subunit epsilon [Actinobacillus succinogenes
130Z]
gi|150840274|gb|ABR74245.1| DNA polymerase III, epsilon subunit [Actinobacillus succinogenes
130Z]
Length = 259
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/245 (43%), Positives = 146/245 (59%), Gaps = 22/245 (8%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N +GH IIEIG VE+ NR+ TG LH Y+ P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVELINRKYTGRKLHLYVKPDRPIDPEAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K FS + F++++ ++E++IHNA FDVGF+D E T I +
Sbjct: 69 GITDEMLADKPDFSTVAQEFIDFIKDAELLIHNAPFDVGFMDYEFRKHHIDIKTADICTV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+ + GKRN+LDALCDR +I RTLHG LLDAE+L +VYLAMT GQ +L
Sbjct: 129 TDTLQMARRQYPGKRNNLDALCDRLHIDNSKRTLHGALLDAEILGDVYLAMTGGQVSLFA 188
Query: 179 KPK----INNSNNIETKIKIPNNIPIKLAN---------SNELVQHNMILSKIDKHSNGR 225
+ + + + IE + IP+++++ EL H LS I+K S
Sbjct: 189 EEETEISVQKTEEIEEEF-----IPVQVSSEGLIALPLTEEELAAHTEYLSLINKKSKDN 243
Query: 226 CIWKK 230
CIW K
Sbjct: 244 CIWIK 248
>gi|387886659|ref|YP_006316958.1| DNA-directed DNA polymerase [Francisella noatunensis subsp.
orientalis str. Toba 04]
gi|386871475|gb|AFJ43482.1| DNA-directed DNA polymerase [Francisella noatunensis subsp.
orientalis str. Toba 04]
Length = 230
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/190 (50%), Positives = 132/190 (69%), Gaps = 3/190 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R++TGNNLH+Y NP + E ALA+HGL
Sbjct: 1 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPNYEVEAGALAVHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F E V+ + ++ +E+IIHNAAFDV F++ EL LL Y +++ +
Sbjct: 61 TNEFLADKPLFEENVEKMIGFLKGAEVIIHNAAFDVPFINWELGLLKNNKYGTLEQHVAK 120
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
ITD+L +ARK H ++++LDALC RY+I HRT HG LLD+ELLA+VYLAMT GQ+NL
Sbjct: 121 ITDSLELARKKHPLQKSNLDALCKRYHIRNDHRTFHGALLDSELLADVYLAMTGGQTNLV 180
Query: 178 FKPKINNSNN 187
+ N S N
Sbjct: 181 LQTTKNASKN 190
>gi|261253702|ref|ZP_05946275.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891 =
ATCC 33934]
gi|260937093|gb|EEX93082.1| DNA polymerase III epsilon subunit [Vibrio orientalis CIP 102891 =
ATCC 33934]
Length = 223
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 96/215 (44%), Positives = 139/215 (64%), Gaps = 6/215 (2%)
Query: 19 GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNF 78
GHRIIEIG VEI NR++TG + H YI P RD + A+ +HG+T +FL +K ++ ++ F
Sbjct: 11 GHRIIEIGAVEIINRKLTGRHFHVYIKPDRDIQSEAVEVHGITDEFLVDKPEYQDVHAEF 70
Query: 79 LNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDTLLMARKIHTGKRNSLD 137
L+++ +E++ HNA FD GF+D E +L + T ++TDTL MA+KI GKRN+LD
Sbjct: 71 LDFIKGAELVAHNAPFDTGFMDYEFGMLDPTIGKTDDYCKVTDTLAMAKKIFPGKRNNLD 130
Query: 138 ALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKINNSNNIETKIKIPNN 197
LCDRY I HRTLHG LLDAE+LA+VYL MT GQ++L F +N + E + +
Sbjct: 131 VLCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLQFNAGSSNDDGGEAIKRAASG 190
Query: 198 ---IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + A ++E+ HN L ++K NG C+W+
Sbjct: 191 RKALKVLRATADEIDAHNKRLDIVEK--NGSCLWR 223
>gi|86146863|ref|ZP_01065182.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
gi|85835315|gb|EAQ53454.1| DNA polymerase III subunit epsilon [Vibrio sp. MED222]
Length = 255
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 147/236 (62%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N G HRI+EIG VEI NR++TG + H YI P R ++ A+ +
Sbjct: 22 RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPDRAIQEEAIGV 81
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K ++ +I FL+++ +E++ HNA FD GF+D E L + T
Sbjct: 82 HGITDEFLIDKPEYQDIHKEFLDFIKGAELVAHNAPFDTGFMDYEFEKLNPAIGKTDDYC 141
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 142 KVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 201
Query: 177 NFKP--KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F + +I ++ + A ++E+ H L ++K +G C+W++
Sbjct: 202 QFNAGQQEGEGESIRRAESGRKSLKVLRATADEVEAHQSRLDLVEK--SGSCLWRQ 255
>gi|422938743|ref|YP_007011890.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
holarctica FSC200]
gi|407293894|gb|AFT92800.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica FSC200]
Length = 230
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 134/196 (68%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R+ITGNNLH+Y NP E ALAIHGL
Sbjct: 1 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYKVEAGALAIHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD + ++ +E+IIHNAAFDV F++ ELSLL Y + + +
Sbjct: 61 TNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVAK 120
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 121 IVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNLS 180
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ +
Sbjct: 181 LQTAKTVSKNSIDIDV 196
>gi|423050695|ref|YP_007009129.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
holarctica F92]
gi|421951417|gb|AFX70666.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
holarctica F92]
Length = 230
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 134/196 (68%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R+ITGNNLH+Y NP E ALAIHGL
Sbjct: 1 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYKVEAGALAIHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD + ++ +E+IIHNAAFDV F++ ELSLL Y + + +
Sbjct: 61 TNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVAK 120
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 121 IVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNLS 180
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ +
Sbjct: 181 LQTAKTVSKNSIDIDV 196
>gi|307250533|ref|ZP_07532477.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306857426|gb|EFM89538.1| hypothetical protein appser4_13130 [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 248
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 144/239 (60%), Gaps = 14/239 (5%)
Query: 5 IVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+VLD ETTG++ GH IIEIG VE+ NR++TG H YI P R+ E+ A+ +HG+
Sbjct: 1 MVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVEEEAIKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYRIT 119
T +FL++K F+E+ D F+ ++ +E+IIHNA FDV F+D E S L T + +T
Sbjct: 61 TNEFLQDKPVFAEVADEFIEFIKGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVT 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNLNF 178
D+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ + L
Sbjct: 121 DSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALLGE 180
Query: 179 KPKINNSNNIE-------TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N NI TK + I + L+ E H L IDK S G CIW +
Sbjct: 181 EDASANHENIADLGLGTITKFETSGLIVLSLSE-EEQTAHEEYLKLIDKKSKGNCIWMR 238
>gi|27904727|ref|NP_777853.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Bp
(Baizongia pistaciae)]
gi|31340041|sp|Q89AN3.1|DPO3E_BUCBP RecName: Full=DNA polymerase III subunit epsilon
gi|27904124|gb|AAO26958.1| putative DNA polymerase III epsilon chain [Buchnera aphidicola str.
Bp (Baizongia pistaciae)]
Length = 245
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 146/235 (62%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLDIETTG+N H+IIEIG VE+ N TGNN H YI P R +K + IH
Sbjct: 6 RKIVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-R 117
G+T FL +K KF EI FL Y++NS++IIHNA FDVGF++ EL+++ Y
Sbjct: 66 GITDNFLLDKPKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKISDYCN 125
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+ DTL +AR++ GK+NSLDALC+RY I+ HR H L+DA+LLA+VY MT Q +++
Sbjct: 126 VVDTLPLARQLFPGKKNSLDALCNRYKINVSHRDFHSALIDAKLLAKVYTFMTSFQQSIS 185
Query: 178 FKPKINNSNNIETKIKIPNNIPIK----LANSNELVQHNMILSKIDKHSNGRCIW 228
K +N N+I+ K+ + +P + LA +EL QH L + K G C+W
Sbjct: 186 IFDKNSNLNSIQKNAKLDSRVPFRSTLLLATKDELQQHMKYLKYV-KQETGNCVW 239
>gi|89075025|ref|ZP_01161470.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
gi|89049264|gb|EAR54828.1| DNA polymerase III subunit epsilon [Photobacterium sp. SKA34]
Length = 241
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 149/239 (62%), Gaps = 15/239 (6%)
Query: 2 HRHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IV D ETTG+N+ +GHRI+EIG VEI NR++TG H YI P R + A+ +
Sbjct: 6 QRIIVFDTETTGMNMTGPHYEGHRIVEIGAVEIINRKLTGKTFHVYIKPDRPIDPEAIDV 65
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL K +++I F++++ +E++ HNA+FD+GF+D E L+G T+ I
Sbjct: 66 HGITDEFLIGKPSYADIHQEFIDFIDGAELVAHNASFDIGFMDYEFQLMGSDLKKTEDIC 125
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+++ GKRN+LD LC RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 126 KVTDTLEMAKRLFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLMMTGGQTSL 185
Query: 177 NFKPKINNSNNIETKIKIP------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+N + E + I + + A+++ELV H L I K ++ +W+
Sbjct: 186 KLSG--DNEGDSEKEFAIKRLVGERKGLKVICASADELVSHEERLDLIGKKAD--VLWR 240
>gi|187931822|ref|YP_001891807.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
mediasiatica FSC147]
gi|187712731|gb|ACD31028.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
mediasiatica FSC147]
Length = 230
Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 134/196 (68%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R+ITGNNLH+Y NP + E ALAIHGL
Sbjct: 1 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAGALAIHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD + ++ +E+IIHNAAFDV F++ E SLL Y + + +
Sbjct: 61 TNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWEFSLLKNNKYGTLEQNVAK 120
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 121 IVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNLS 180
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ +
Sbjct: 181 LQTAKTVSKNSIDIDV 196
>gi|387824655|ref|YP_005824126.1| DNA polymerase III subunit epsilon [Francisella cf. novicida 3523]
gi|332184121|gb|AEE26375.1| DNA polymerase III epsilon subunit [Francisella cf. novicida 3523]
Length = 230
Score = 194 bits (493), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 135/196 (68%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R++TGN LH+Y NP + E ALAIHGL
Sbjct: 1 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRVTGNTLHFYCNPNYEVEAGALAIHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD ++++ +E+IIHNAAFDV F++ ELSLL Y + + +
Sbjct: 61 TNEFLADKPLFEDKVDEMIDFLKGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVAK 120
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 121 IVDSLELARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNLS 180
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ I
Sbjct: 181 LQTAKTISKNSIDIDI 196
>gi|89256347|ref|YP_513709.1| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
holarctica LVS]
gi|115314792|ref|YP_763515.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
gi|254367683|ref|ZP_04983704.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica 257]
gi|254369321|ref|ZP_04985333.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp.
holarctica FSC022]
gi|89144178|emb|CAJ79442.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica LVS]
gi|115129691|gb|ABI82878.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
holarctica OSU18]
gi|134253494|gb|EBA52588.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica 257]
gi|157122271|gb|EDO66411.1| hypothetical protein FTAG_00288 [Francisella tularensis subsp.
holarctica FSC022]
Length = 238
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 134/196 (68%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R+ITGNNLH+Y NP E ALAIHGL
Sbjct: 9 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYKVEAGALAIHGL 68
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD + ++ +E+IIHNAAFDV F++ ELSLL Y + + +
Sbjct: 69 TNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVAK 128
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 129 IVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNLS 188
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ +
Sbjct: 189 LQTAKTVSKNSIDIDV 204
>gi|169656602|ref|YP_001428489.2| DNA polymerase III subunit epsilon [Francisella tularensis subsp.
holarctica FTNF002-00]
gi|290954177|ref|ZP_06558798.1| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica URFT1]
gi|164551670|gb|ABU61533.2| DNA polymerase III, epsilon subunit [Francisella tularensis subsp.
holarctica FTNF002-00]
Length = 238
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 99/196 (50%), Positives = 134/196 (68%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R+ITGNNLH+Y NP E ALAIHGL
Sbjct: 9 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYKVEAGALAIHGL 68
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD + ++ +E+IIHNAAFDV F++ ELSLL Y + + +
Sbjct: 69 TNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVAK 128
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 129 IVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNLS 188
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ +
Sbjct: 189 LQTAKTVSKNSIDIDV 204
>gi|188578361|ref|YP_001915290.1| DNA polymerase III subunit epsilon [Xanthomonas oryzae pv. oryzae
PXO99A]
gi|188522813|gb|ACD60758.1| DNA polymerase III, epsilon subunit [Xanthomonas oryzae pv. oryzae
PXO99A]
Length = 244
Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust.
Identities = 100/236 (42%), Positives = 143/236 (60%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +GNN H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWRKGNRVVEIGAVELLERRPSGNNFHRYLKPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F ++V+ FL Y+ +E+IIHNAAFD+GFLD EL+LLG ++ + + R T D
Sbjct: 62 EFLADKPLFGDVVEEFLAYIDGAELIIHNAAFDLGFLDNELALLG-DHYGRIVERATVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL+MAR+ + G+RNSLDALC R + HR LHG LLDA++LA+VY+A+T GQ + F
Sbjct: 121 TLMMARERYPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILADVYIALTSGQEEIGFAS 180
Query: 181 KINNSNN--------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +P P ++E H L ++ K + GR +W
Sbjct: 181 ADAGQQTDAASGMIAFDPALLLPR--PRVAVTASESQAHEARLVQLRKKA-GRALW 233
>gi|343518319|ref|ZP_08755312.1| DNA polymerase III, epsilon subunit [Haemophilus pittmaniae HK 85]
gi|343393810|gb|EGV06362.1| DNA polymerase III, epsilon subunit [Haemophilus pittmaniae HK 85]
Length = 256
Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 96/178 (53%), Positives = 123/178 (69%), Gaps = 4/178 (2%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRKFTGNNFHLYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K F I +FL+Y+ +E++IHNA FDVGF+D E L T I +
Sbjct: 66 GITDEMLADKPDFRMIAQDFLDYIRGAELLIHNAPFDVGFMDYEFRKLNLDVKTNDICAV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYLAMT GQ++L
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLAMTGGQTSL 183
>gi|420376713|ref|ZP_14876434.1| DNA polymerase III, epsilon subunit [Shigella flexneri 1235-66]
gi|391301670|gb|EIQ59553.1| DNA polymerase III, epsilon subunit [Shigella flexneri 1235-66]
Length = 225
Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 92/217 (42%), Positives = 135/217 (62%), Gaps = 6/217 (2%)
Query: 18 DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDN 77
+GH+IIEIG VE+ NR++TGNN H Y+ P R + A +HG+ +FL +K F+++ D
Sbjct: 9 EGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFADVADE 68
Query: 78 FLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDTLLMARKIHTGKRNSL 136
FL+Y+ +E++IHNA+FD+GF+D E + L T ++TD+L +ARK+ GKRNSL
Sbjct: 69 FLDYIRGAELVIHNASFDIGFMDYEFAKLHRDIPKTNTFCKVTDSLALARKMFPGKRNSL 128
Query: 137 DALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK----PKINNSNNIETKI 192
DALC RY I RTLHG LLDA++LA+VYL MT GQ+ + F + N I+ +
Sbjct: 129 DALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTTMAFSMEGDSQQQNDTGIQRIV 188
Query: 193 KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + + A EL H L + K G C+W+
Sbjct: 189 RQSSKLRVVFATDEELAAHESRLDLVQK-KGGSCLWR 224
>gi|208779358|ref|ZP_03246704.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG]
gi|208745158|gb|EDZ91456.1| DNA polymerase III, epsilon subunit [Francisella novicida FTG]
Length = 238
Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 134/196 (68%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R+ITGNNLH+Y NP + E ALAIHGL
Sbjct: 9 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNNLHFYCNPNYEVEAGALAIHGL 68
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD + ++ +E+IIHNAAFDV F++ ELSLL Y + + +
Sbjct: 69 TNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELSLLKNNKYGTLEQNVAK 128
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HR HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 129 IVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRAFHGALLDSELLADVYLAMTGGQTNLS 188
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ +
Sbjct: 189 LQTAKTVSKNSIDIDV 204
>gi|117920808|ref|YP_870000.1| DNA polymerase III subunit epsilon [Shewanella sp. ANA-3]
gi|117613140|gb|ABK48594.1| DNA polymerase III, epsilon subunit [Shewanella sp. ANA-3]
Length = 242
Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 147/235 (62%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R ++LD ETTG+N + GHRIIEIGCVE+ NR++TG H YINPG+ + A+A+
Sbjct: 9 RQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINPGQAIDPEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIY 116
HG+T + + N+ +F +I F++++S +EI+ HNA FDV F+D E SLL T I
Sbjct: 69 HGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPLGPKTSEIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
I D+L +A+ +H G++N+LDALC RY I R HG LLDAE+LA+VYLAMT GQ+
Sbjct: 129 EILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYLAMTGGQTKF 188
Query: 177 NFK--PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
N + I+ N+ + A+++ELV H L + K +G+C+W+
Sbjct: 189 NLSNDEVGQEAGGIQRFDPASLNLKVISASADELVMHEKRLDLVAK--SGKCLWR 241
>gi|407070718|ref|ZP_11101556.1| DNA polymerase III subunit epsilon [Vibrio cyclitrophicus ZF14]
Length = 255
Score = 193 bits (491), Expect = 4e-47, Method: Compositional matrix adjust.
Identities = 101/236 (42%), Positives = 148/236 (62%), Gaps = 10/236 (4%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N G HRI+EIG VEI NR++TG + H YI P R ++ A+ +
Sbjct: 22 RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRRLTGRHFHVYIKPDRAIQEEAIGV 81
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K ++ +I FL+++ +E++ HNA FD GF+D E L + T
Sbjct: 82 HGITDEFLIDKPEYQDIHKEFLDFIKGAELVAHNAPFDTGFMDYEFEKLNPAIGKTDDYC 141
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LCDRY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 142 KVTDTLAMAKKIFPGKRNNLDILCDRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 201
Query: 177 NFKP--KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F + + +I ++ + A ++E+ H L ++K +G C+W++
Sbjct: 202 QFNAGQQEGEAESIRRVESGRKSLKVLRATADEVEAHQNRLDLVEK--SGSCLWRQ 255
>gi|148979853|ref|ZP_01815731.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
gi|417949127|ref|ZP_12592266.1| DNA polymerase III subunit epsilon [Vibrio splendidus ATCC 33789]
gi|145961545|gb|EDK26846.1| DNA polymerase III subunit epsilon [Vibrionales bacterium SWAT-3]
gi|342808735|gb|EGU43879.1| DNA polymerase III subunit epsilon [Vibrio splendidus ATCC 33789]
Length = 255
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 150/237 (63%), Gaps = 12/237 (5%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N G HRI+EIG VEI NR++TG + H YI P R ++ A+ +
Sbjct: 22 RIVVLDTETTGMNTEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYIKPDRAIQEEAIGV 81
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K ++ +I FL+++ +E++ HNA FD GF+D E L + T
Sbjct: 82 HGITDEFLVDKPEYQDIHKEFLDFIKGAELVAHNAPFDTGFMDYEFEKLDPTIGKTDDYC 141
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 142 KVTDTLDMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 201
Query: 177 NFKPKINNSNNIETKIKIPN---NIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
F +E+ ++ + ++ + A ++E+ H L ++K +G C+W++
Sbjct: 202 QFNAG-QQEGGVESIRRVESGRKSLKVLRATADEVEAHQSRLDLVEK--SGSCLWRQ 255
>gi|337755292|ref|YP_004647803.1| DNA polymerase III subunit epsilon [Francisella sp. TX077308]
gi|336446897|gb|AEI36203.1| DNA polymerase III epsilon subunit [Francisella sp. TX077308]
Length = 230
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 95/190 (50%), Positives = 130/190 (68%), Gaps = 3/190 (1%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R++TGNNLH+Y NP + E ALA+HGL
Sbjct: 1 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRKVTGNNLHFYCNPNYEVEAGALAVHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F E V+ ++++ +E+IIHNAAFDV F++ EL LL Y +++ +
Sbjct: 61 TNEFLADKPLFEENVEKMIDFLKGAEVIIHNAAFDVPFINWELGLLKNNKYGTLEQHVAK 120
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL
Sbjct: 121 IVDSLELARKKHPLQKNNLDALCKRYYIRNDHRTFHGALLDSELLADVYLAMTGGQTNLT 180
Query: 178 FKPKINNSNN 187
N S +
Sbjct: 181 LHTAKNASKD 190
>gi|157375130|ref|YP_001473730.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
gi|157317504|gb|ABV36602.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
Length = 242
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 152/237 (64%), Gaps = 14/237 (5%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R ++LD ETTG+N I GHRIIEIGCVE+ NR++TG + H YINP + ++ A+ +
Sbjct: 9 RQVILDTETTGMNQGAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQQIIDEEAIEV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG+T +++ NK KF+EI +F++++ +E++ HNA+FDV F+D E SLL T I
Sbjct: 69 HGITNEYVANKPKFAEISQSFIDFIDGAEVVAHNASFDVNFMDHEFSLLQPRGPKTADIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+I DTL +A+ +H G++N+LDALC RY I R LHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 QILDTLDIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLMMTGGQTKF 188
Query: 177 NFKPKINNSNNIETKIKIPN----NIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
N + + E I N N+ + A ++EL +H L + K +G+CIW+
Sbjct: 189 NLSG--DKAGEGEGGIIRLNSNRANLKVIRATADELTKHEERLDLVAK--SGQCIWR 241
>gi|254522635|ref|ZP_05134690.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
gi|219720226|gb|EED38751.1| DNA polymerase III, epsilon subunit [Stenotrophomonas sp. SKA14]
Length = 243
Score = 193 bits (490), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 105/233 (45%), Positives = 142/233 (60%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+RI+EIGCVE+ R+ TGNN H YI P + E+ A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRIVEIGCVELFKRRPTGNNYHQYIKPDCEFEQGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
+FL +K F++I D FL ++ +E+IIHNAAFD+GFLD ELSLLG + K R T D
Sbjct: 62 EFLDDKPGFAQIADEFLAFIDGAELIIHNAAFDLGFLDNELSLLG-PQYGKITDRCTVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR+ G+RNSLDALC R + HR LHGGLLDA++L +VY+A+T GQ + F
Sbjct: 121 TLAMARERFPGQRNSLDALCKRLGVDNSHRALHGGLLDAQILGDVYIALTSGQEEIGFGL 180
Query: 181 KINNSNNIETKIKIPNNI-----PIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ ++ + P +A +EL H L ++ K + G +W
Sbjct: 181 GDEDGGGAGAALQAFDASKLLPRPRVMATPSELEAHAARLERLRKKA-GHALW 232
>gi|406036155|ref|ZP_11043519.1| bifunctional protein dnaQ [Acinetobacter parvus DSM 16617 = CIP
108168]
Length = 452
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 98/233 (42%), Positives = 142/233 (60%), Gaps = 10/233 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGR---DSEKSALAIHG 59
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + DSE AIHG
Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSE----AIHG 280
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
+T FL++K ++EI D Y+ +EII HNA FD+ FLDME G ++ + +T
Sbjct: 281 ITDDFLQDKPTYAEIADTLFAYLKGAEIIAHNATFDMNFLDMEFKRAGLPLLSE-VCEVT 339
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL +A+ H G++NSLDAL RY I RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 340 DTLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDID 399
Query: 180 P--KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N T+ ++ +P+ A+ +EL QH + + ++ C + K
Sbjct: 400 ALSQTEQGQNKNTRQRVQIELPVIYASGDELAQHETWVKQFEQKHGKPCFFAK 452
>gi|113970494|ref|YP_734287.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-4]
gi|114047729|ref|YP_738279.1| DNA polymerase III subunit epsilon [Shewanella sp. MR-7]
gi|113885178|gb|ABI39230.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-4]
gi|113889171|gb|ABI43222.1| DNA polymerase III, epsilon subunit [Shewanella sp. MR-7]
Length = 242
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 148/235 (62%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R ++LD ETTG+N + GHRIIEIGCVE+ NR++TG H YINPG+ + A+A+
Sbjct: 9 RQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINPGQAIDPEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIY 116
HG+T + + N+ +F +I F++++S +EI+ HNA FDV F+D E SLL T I
Sbjct: 69 HGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPLGPKTSDIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
I D+L +A+ +H G++N+LDALC RY I R HG LLDAE+LA+VYLAMT GQ+
Sbjct: 129 EILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRLYHGALLDAEILADVYLAMTGGQTKF 188
Query: 177 NFKPKI--NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
N + + I+ N+ + A+++ELV H L + K +G+C+W+
Sbjct: 189 NLSNEEVGQEAGGIQRFDPTSLNLKVIRASADELVMHEERLDLVAK--SGKCLWR 241
>gi|397166896|ref|ZP_10490339.1| DNA polymerase III, epsilon subunit [Enterobacter radicincitans DSM
16656]
gi|396091042|gb|EJI88609.1| DNA polymerase III, epsilon subunit [Enterobacter radicincitans DSM
16656]
Length = 226
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 92/218 (42%), Positives = 138/218 (63%), Gaps = 7/218 (3%)
Query: 18 DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDN 77
+GH+IIEIG VE+ NR++TGNN H Y+ P R + A +HG+ +FL +K F++I D
Sbjct: 9 EGHKIIEIGAVEVVNRRLTGNNYHIYLKPDRLVDPEAFGVHGIADEFLLDKPTFADIADE 68
Query: 78 FLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDTLLMARKIHTGKRNSL 136
F++Y+ +E++IHNA+FD+GF+D E L T ++TD+L +ARK+ GKRNSL
Sbjct: 69 FIDYIRGAELVIHNASFDIGFMDYEFGKLNRGIPKTDTFCKVTDSLALARKMFPGKRNSL 128
Query: 137 DALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKINNSNN-----IETK 191
DALC RY I RTLHG LLDA++LA+VYL MT GQ+++ F + + I+
Sbjct: 129 DALCSRYEIDNSKRTLHGALLDAQILADVYLMMTGGQTSMKFSMEGEGQSQTGEVGIQRV 188
Query: 192 IKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ + + + LA+ +EL H L + K G C+W+
Sbjct: 189 VRAASKLRVVLASDDELAAHESRLDLVQK-KGGSCLWR 225
>gi|380510638|ref|ZP_09854045.1| DNA polymerase III subunit epsilon [Xanthomonas sacchari NCPPB
4393]
Length = 245
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 142/235 (60%), Gaps = 13/235 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +G N H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRVVEIGAVELLERRPSGRNFHRYLRPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--D 120
FL +K +F E+VD FL ++ +E+IIHNA+FD+GFLD ELS LG S + + + R T D
Sbjct: 62 DFLADKPEFHEVVDEFLEFIDGAELIIHNASFDLGFLDYELSRLGES-YGRILDRATVID 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK- 179
TLL+AR+ G+RNSLDALC R + HR LHG LLDA++L++VY+A+T GQ + F
Sbjct: 121 TLLLARERFPGQRNSLDALCKRLGVDNSHRQLHGALLDAQILSDVYIALTSGQEEIGFAL 180
Query: 180 ------PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + +P P + ++EL H L K+ K + GR +W
Sbjct: 181 AEDGAAHAAAQGPAFDMTMLLPR--PRVVPTASELEAHQARLEKLRKKA-GRALW 232
>gi|424657352|ref|ZP_18094637.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-81A2]
gi|408052473|gb|EKG87512.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HC-81A2]
Length = 226
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 95/218 (43%), Positives = 144/218 (66%), Gaps = 8/218 (3%)
Query: 18 DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDN 77
+GHRIIEIG VEI NR++TG + H Y+ P RD + A+ +HG+T +FLK+K ++ ++ +
Sbjct: 10 EGHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQLEAIEVHGITDEFLKDKPEYKDVHEE 69
Query: 78 FLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDTLLMARKIHTGKRNSL 136
F++++ +E++ HNA FDVGF+D E + LG + T ++TDTL MA++I GKRN+L
Sbjct: 70 FVDFIKGAELVAHNAPFDVGFMDYEFAKLGGAIGKTSDFCKVTDTLAMAKRIFPGKRNNL 129
Query: 137 DALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKINNSNNIETK-IKIP 195
D LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L F NS + + +K
Sbjct: 130 DILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLQFSSVTQNSGELSAESLKRA 189
Query: 196 NN----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + + A+++EL H L + K +G C+W+
Sbjct: 190 RSERKALKVLAASADELQAHQDRLDIVAK--SGTCLWR 225
>gi|254372921|ref|ZP_04988410.1| hypothetical protein FTCG_00492 [Francisella tularensis subsp.
novicida GA99-3549]
gi|385792934|ref|YP_005825910.1| hypothetical protein [Francisella cf. novicida Fx1]
gi|151570648|gb|EDN36302.1| hypothetical protein FTCG_00492 [Francisella novicida GA99-3549]
gi|332678259|gb|AEE87388.1| DNA polymerase III epsilon subunit [Francisella cf. novicida Fx1]
Length = 230
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 133/196 (67%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R+ITGN LH+Y NP + E ALAIHGL
Sbjct: 1 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPNYEVEAGALAIHGL 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD + ++ +E+IIHNAAFDV F++ EL LL Y + + R
Sbjct: 61 TNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQNVAR 120
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 121 IVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNLS 180
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ +
Sbjct: 181 LQTAKTVSKNSIDIDV 196
>gi|254374374|ref|ZP_04989856.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548]
gi|151572094|gb|EDN37748.1| hypothetical protein FTDG_00541 [Francisella novicida GA99-3548]
Length = 238
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 98/196 (50%), Positives = 133/196 (67%), Gaps = 4/196 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R + +D ETTG + G+RIIE G VE+ +R+ITGN LH+Y NP + E ALAIHGL
Sbjct: 9 MSRQVFIDTETTGFDYKIGNRIIEFGAVEVIDRRITGNTLHFYCNPNYEVEAGALAIHGL 68
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL---GYSNFTKYIYR 117
T +FL +K F + VD + ++ +E+IIHNAAFDV F++ EL LL Y + + R
Sbjct: 69 TNEFLADKPLFEDKVDEMIEFLRGAEVIIHNAAFDVPFINWELGLLRNNKYGTLEQNVAR 128
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
I D+L +ARK H ++N+LDALC RY I HRT HG LLD+ELLA+VYLAMT GQ+NL+
Sbjct: 129 IVDSLDLARKKHPLQKNNLDALCKRYQIRNDHRTFHGALLDSELLADVYLAMTGGQTNLS 188
Query: 178 FK-PKINNSNNIETKI 192
+ K + N+I+ +
Sbjct: 189 LQTAKTVSKNSIDIDV 204
>gi|417319207|ref|ZP_12105765.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
gi|328474397|gb|EGF45202.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus 10329]
Length = 240
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 146/236 (61%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N G HRIIEIG VEI NR++TG + H YI P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPDREIQPEAIQV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K +++ I FL+++ +E++ HNA+FD GF+D E L + T
Sbjct: 71 HGITDEFLVDKPEYASIHQEFLDFIKGAELVAHNASFDTGFMDYEFEKLDPTIGKTDDYC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
F +ET +I +K+ A ++EL H L ++ CIW +
Sbjct: 191 EFNAN-KQEGGVETIRRIEGRKALKVLRATADELEAHQKRLELVND-----CIWHQ 240
>gi|388456635|ref|ZP_10138930.1| DNA polymerase III subunit epsilon [Fluoribacter dumoffii Tex-KL]
Length = 233
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 99/228 (43%), Positives = 146/228 (64%), Gaps = 10/228 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG+ GHR+IEIGCVE+ +R++TG + H Y+NP R ++ A +HG++
Sbjct: 2 RQIVLDTETTGIGHEQGHRVIEIGCVELFDRKLTGKHFHVYLNPQRQVDEGAFRVHGISN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F+E + F ++ +E+IIHNA FDVGFL+ EL L+ ++ + I DTL
Sbjct: 62 EFLQDKPLFAEKAEEFWQFIVGAELIIHNAPFDVGFLNSELKLIQWNKKLEEYCSIIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL------ 176
++AR + G+RNSLDALC R+ I +R LHG LLDAE+LA VYLAMT GQS+L
Sbjct: 122 VLARDKYPGQRNSLDALCKRFGIDHFNRELHGALLDAEILAYVYLAMTGGQSSLFSEVEE 181
Query: 177 -NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSN 223
+ K+ N T + + N + ++ A++ EL H+ + + K S
Sbjct: 182 TSIHAKVKNQEV--TALCLANPVVLQ-ADNGELESHHAFIEFLSKKSG 226
>gi|336311668|ref|ZP_08566629.1| DNA polymerase III epsilon subunit [Shewanella sp. HN-41]
gi|335864782|gb|EGM69851.1| DNA polymerase III epsilon subunit [Shewanella sp. HN-41]
Length = 242
Score = 192 bits (489), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 147/235 (62%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R I+LD ETTG+N + GHRIIEIGCVE+ NR++TG H YINPG+ + A+A+
Sbjct: 9 RQIILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINPGQAIDPEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG+T + + ++ +F ++ F+ ++ +EI+ HNA FDV F+D E SLL T I
Sbjct: 69 HGITDERVAHEPRFHQVAQQFIEFIDGAEIVAHNANFDVSFMDHEFSLLQPQGPKTASIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
I DTL +A+ +H G++N+LDALC RY I R HG LLDAE+LA+VYL MT GQ+
Sbjct: 129 DILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRQYHGALLDAEILADVYLTMTGGQTKF 188
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
N + + PN++ +K+ A+++ELV H L + K +G+C+W+
Sbjct: 189 NLSNEEVGQEAGGIQRFDPNSLNLKVISASADELVMHEQRLDLVAK--SGKCLWR 241
>gi|400405140|ref|YP_006587999.1| DNA polymerase III subunit epsilon [secondary endosymbiont of
Ctenarytaina eucalypti]
gi|400363503|gb|AFP84571.1| DNA polymerase III, epsilon subunit [secondary endosymbiont of
Ctenarytaina eucalypti]
Length = 253
Score = 192 bits (489), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 101/241 (41%), Positives = 144/241 (59%), Gaps = 15/241 (6%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG++ + GHRIIEIG VE+ NR++TG N H Y+ P R A +H
Sbjct: 8 RQIILDTETTGMSKVGPHYAGHRIIEIGAVEVMNRRLTGRNFHVYLKPDRLVAPEAFHVH 67
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYIY 116
G++ FL +K FS+I D FL ++ +E++IHNA FD+GF+D E S+L G S +
Sbjct: 68 GISNAFLSDKPTFSDIADEFLQFICGAELVIHNAPFDIGFIDYEFSMLHRGISKTCTFC- 126
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TD+LL+ARK+ GKRNSLDALC RY + RT HG L DAE+LA V+L MT GQ+ +
Sbjct: 127 KVTDSLLLARKLFPGKRNSLDALCVRYLVDNSKRTRHGALYDAEILANVFLLMTGGQTAM 186
Query: 177 NF-------KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+F + K I + + I A+ E+ H L + K +G C+W+
Sbjct: 187 HFSMADEDEQSKGGGGVQIHRVPRGQKFLKIIYASDEEIFSHEQQLDLL-KEKSGSCLWR 245
Query: 230 K 230
+
Sbjct: 246 E 246
>gi|381401886|ref|ZP_09926776.1| DNA polymerase III, epsilon subunit [Kingella kingae PYKK081]
gi|380833128|gb|EIC13006.1| DNA polymerase III, epsilon subunit [Kingella kingae PYKK081]
Length = 252
Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 146/241 (60%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLN---IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHG 59
R I+LD ETTG + R+IE +E+ NRQ T NNLH YI+P RD A+A+HG
Sbjct: 7 RQIILDTETTGFEHSAAENPDRMIEFAGLEMVNRQFTKNNLHLYIHPQRDISPDAIAVHG 66
Query: 60 LTTKFLK--NKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR 117
+T + L+ N F+E+ +++ +E+IIHNA FDVGFLD E + +G K I
Sbjct: 67 ITLEKLESENAPVFAEVAQQIFDFIKGAELIIHNAKFDVGFLDAEFARVGLPK-VKTICT 125
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+ DTL MAR + G++NSLDALC+R ++ + R LHG L+D ELL EVYLAMTRGQ +L+
Sbjct: 126 VVDTLEMARDRYPGQKNSLDALCNRLDVDRSRRVLHGALIDCELLGEVYLAMTRGQFSLD 185
Query: 178 --FKPKINNSN------NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + S+ T + P + ++ A+ EL +H L+++DK +G CI++
Sbjct: 186 AAFASDVAESSASPVIATTATLLPRPEYLKVQAASPEELAEHEEYLNQLDKAVDGSCIYR 245
Query: 230 K 230
+
Sbjct: 246 Q 246
>gi|307257347|ref|ZP_07539117.1| hypothetical protein appser10_13450 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
gi|306864197|gb|EFM96110.1| hypothetical protein appser10_13450 [Actinobacillus
pleuropneumoniae serovar 10 str. D13039]
Length = 248
Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 144/239 (60%), Gaps = 14/239 (5%)
Query: 5 IVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+VLD ETTG++ GH IIEIG VE+ NR++TG H YI P R+ ++ A+ +HG+
Sbjct: 1 MVLDTETTGMSFSGPPQIGHNIIEIGAVEVINRRLTGRTFHVYIKPPREVDEEAIKVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYRIT 119
T +FL++K F+E+ D F+ ++ +E+IIHNA FDV F+D E S L T + +T
Sbjct: 61 TNEFLQDKPVFAEVADEFIEFIKGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVT 120
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNLNF 178
D+L +ARK++ GKRN+LDALCDR I R LHG LLDAE+LA+V+L MT GQ + L
Sbjct: 121 DSLAVARKMYPGKRNNLDALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALLGE 180
Query: 179 KPKINNSNNIE-------TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N NI TK + I + L+ E H L IDK S G CIW +
Sbjct: 181 EDASANHENIADLGLGTITKFETSGLIVLSLSE-EEQTAHEEYLKLIDKKSKGNCIWMR 238
>gi|423686715|ref|ZP_17661523.1| DNA polymerase III subunit epsilon [Vibrio fischeri SR5]
gi|371494783|gb|EHN70381.1| DNA polymerase III subunit epsilon [Vibrio fischeri SR5]
Length = 223
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 144/223 (64%), Gaps = 9/223 (4%)
Query: 12 TGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKF 71
+G + +GHRI+EIG VEI NR++TGN+ H YI P R + A+ +HG+T +FL +K ++
Sbjct: 4 SGGPVYEGHRIVEIGAVEIINRKLTGNHFHVYIKPDRLIDLEAIDVHGITDEFLYDKPEY 63
Query: 72 SEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RITDTLLMARKIHT 130
+I D FL ++ +E++ HNA FDVGF+D E S L T Y +ITDTL MA+KI
Sbjct: 64 KDIHDEFLEFIKGAELVAHNAPFDVGFMDYEFSKLNKLIGTTDQYCKITDTLAMAKKIFP 123
Query: 131 GKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKINNSNNIET 190
GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L+F N+S++ E
Sbjct: 124 GKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLSFSSGENSSDSDEE 183
Query: 191 KIKIPNN----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
IK N+ + + A ++EL H L + C+W+
Sbjct: 184 TIKRLNSGRKGLKVLRATADELEAHEKRLDIV----GDACLWR 222
>gi|445423886|ref|ZP_21436793.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
sp. WC-743]
gi|444755207|gb|ELW79799.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
sp. WC-743]
Length = 471
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 145/231 (62%), Gaps = 5/231 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
+ +LD ETTG D RI+E+G +E+ NR++TG+++H YINPG+ +S AIHG+T
Sbjct: 243 KQFILDTETTGFYYQDSDRIVEVGAIEMVNRKLTGSSIHIYINPGKPVGESE-AIHGITD 301
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FLK+K K+ EI + +Y+ SEII HNA+FD+ FLDME G ++ + +TDTL
Sbjct: 302 EFLKDKPKYEEIAEVLFDYLKGSEIIAHNASFDMNFLDMEFKRSGLPALSE-VCTVTDTL 360
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA+ H G++NSLDAL RY I + RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 361 AMAKSKHPGQKNSLDALVRRYEIVQRDRTFHGALLDAEILADVYLAMTGGQVSFDMDAIS 420
Query: 183 NNSNNIE---TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ + T+ KI ++P+ A+ EL H ++K + CI+ K
Sbjct: 421 AHTEQAQGNTTRQKIEIDVPVIYASDEELEAHENWVNKYQEKHGEACIFAK 471
>gi|384086175|ref|ZP_09997350.1| DNA polymerase III subunit epsilon [Acidithiobacillus thiooxidans
ATCC 19377]
Length = 242
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 90/174 (51%), Positives = 125/174 (71%), Gaps = 3/174 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG++ GHR+IEIG VE+ +R++TGNN Y+NP R S+ AL +HGLT
Sbjct: 4 RQVVLDTETTGIDWKQGHRVIEIGAVELLDRRLTGNNYQQYLNPQRSSDPEALRVHGLTD 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K F+E+ +NFLNY+ ++E+IIHNA FD+GFL+ E LG T +++ DTL
Sbjct: 64 AFLADKPLFAEVAENFLNYLGDAELIIHNAPFDLGFLNHE---LGKIEKTPLNHKVLDTL 120
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ AR+ H G++N L++LC RYN+ HR LHG LLD E+LA+VYL MT GQ ++
Sbjct: 121 VDARRRHPGQKNDLNSLCRRYNVDNSHRELHGALLDCEILAKVYLGMTGGQVDM 174
>gi|153000540|ref|YP_001366221.1| DNA polymerase III subunit epsilon [Shewanella baltica OS185]
gi|160875177|ref|YP_001554493.1| DNA polymerase III subunit epsilon [Shewanella baltica OS195]
gi|217973494|ref|YP_002358245.1| DNA polymerase III subunit epsilon [Shewanella baltica OS223]
gi|378708382|ref|YP_005273276.1| DNA polymerase III subunit epsilon [Shewanella baltica OS678]
gi|418025944|ref|ZP_12664919.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS625]
gi|151365158|gb|ABS08158.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS185]
gi|160860699|gb|ABX49233.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS195]
gi|217498629|gb|ACK46822.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS223]
gi|315267371|gb|ADT94224.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS678]
gi|353534673|gb|EHC04240.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS625]
Length = 242
Score = 192 bits (488), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 148/235 (62%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R ++LD ETTG+N I GHRIIEIGCVE+ NR++TG H YINPG+ + A+A+
Sbjct: 9 RQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINPGQAIDPEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG+T + + + +F ++ +F+N++ +EI+ HNA FDV F+D E SLL T I
Sbjct: 69 HGITDERVSKEPRFHQVAQDFINFIDGAEIVAHNANFDVSFMDHEFSLLQPRGPKTADIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+I DTL++A+ +H G++N+LDALC RY + R HG LLDAE+LA+VYL MT GQ+
Sbjct: 129 QILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYLIMTGGQTKF 188
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
N + + P ++ +K+ A+++EL H L + K +G+C+W+
Sbjct: 189 NLSNEEAGQEAGGIQRFDPQSLNLKVIGASADELTMHEQRLDLVAK--SGKCLWR 241
>gi|403050837|ref|ZP_10905321.1| bifunctional protein dnaQ [Acinetobacter bereziniae LMG 1003]
Length = 471
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 145/231 (62%), Gaps = 5/231 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
+ +LD ETTG D RI+E+G +E+ NR++TG+++H YINPG+ +S AIHG+T
Sbjct: 243 KQFILDTETTGFYYQDSDRIVEVGAIEMVNRKLTGSSIHIYINPGKPVGESE-AIHGITD 301
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FLK+K K+ EI + +Y+ SEII HNA+FD+ FLDME G ++ + +TDTL
Sbjct: 302 EFLKDKPKYEEIAEVLFDYLKGSEIIAHNASFDMNFLDMEFKRSGLPALSE-VCTVTDTL 360
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
MA+ H G++NSLDAL RY I + RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 361 AMAKSKHPGQKNSLDALVRRYEIVQRDRTFHGALLDAEILADVYLAMTGGQVSFDMDAIS 420
Query: 183 NNSNNIE---TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ + T+ KI ++P+ A+ EL H ++K + CI+ K
Sbjct: 421 AHTEQAQGNTTRQKIEIDVPVIYASDEELEAHENWVNKYQEKHGEACIFAK 471
>gi|28899066|ref|NP_798671.1| DNA polymerase III subunit epsilon [Vibrio parahaemolyticus RIMD
2210633]
gi|153837020|ref|ZP_01989687.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ3810]
gi|260361704|ref|ZP_05774731.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
gi|260876852|ref|ZP_05889207.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AN-5034]
gi|260897333|ref|ZP_05905829.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
Peru-466]
gi|260899809|ref|ZP_05908204.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ4037]
gi|433658369|ref|YP_007275748.1| DNA polymerase III epsilon subunit [Vibrio parahaemolyticus BB22OP]
gi|28807290|dbj|BAC60555.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus RIMD
2210633]
gi|149749793|gb|EDM60538.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ3810]
gi|308088283|gb|EFO37978.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
Peru-466]
gi|308091367|gb|EFO41062.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AN-5034]
gi|308107229|gb|EFO44769.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ4037]
gi|308113581|gb|EFO51121.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus K5030]
gi|432509057|gb|AGB10574.1| DNA polymerase III epsilon subunit [Vibrio parahaemolyticus BB22OP]
Length = 240
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 104/236 (44%), Positives = 145/236 (61%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N G HRIIEIG VEI NR++TG + H YI P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPDREIQPEAIQV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K +++ I FL+++ +E++ HNA FD GF+D E L + T
Sbjct: 71 HGITDEFLVDKPEYASIHQEFLDFIKGAELVAHNAPFDTGFMDYEFEKLDPTIGKTDDYC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
F +ET +I +K+ A ++EL H L ++ CIW +
Sbjct: 191 EFNAN-KQEGGVETIRRIEGRKALKVLRATADELEAHQKRLELVND-----CIWHQ 240
>gi|419798328|ref|ZP_14323742.1| DNA polymerase III, epsilon subunit [Neisseria sicca VK64]
gi|385694977|gb|EIG25553.1| DNA polymerase III, epsilon subunit [Neisseria sicca VK64]
Length = 248
Score = 192 bits (488), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/233 (42%), Positives = 142/233 (60%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQITGNNLH Y++P RD + A +HGLT
Sbjct: 12 RQIILDTETTGLYAEGGDRLVEFAGLEMINRQITGNNLHLYVHPERDMPEEAAKVHGLTI 71
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ ++E+IIHNA FDVGFL+ME +G + + ITD
Sbjct: 72 EVLEEKNAPPFAEVGRQIADFIRDAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCTITD 131
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR++ G++ SLDALC+R ++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 132 TLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQFDLMGGE 191
Query: 181 KINNSN---NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K + I + K P ++ + AN+ EL H L + + C+W+K
Sbjct: 192 KEEDEEVKPVIIAETKRPAHLKVIKANAEELAAHEQYLDGLGEA----CLWRK 240
>gi|255065954|ref|ZP_05317809.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
gi|255049865|gb|EET45329.1| DNA polymerase III, epsilon subunit [Neisseria sicca ATCC 29256]
Length = 255
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 99/233 (42%), Positives = 142/233 (60%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQITGNNLH Y++P RD + A +HGLT
Sbjct: 19 RQIILDTETTGLYAEGGDRLVEFAGLEMINRQITGNNLHLYVHPERDMPEEAAKVHGLTI 78
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ ++E+IIHNA FDVGFL+ME +G + + +TD
Sbjct: 79 EVLEEKNAPPFAEVGRQIADFIRDAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCTVTD 138
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR++ G++ SLDALC+R ++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 139 TLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQFDLMGGE 198
Query: 181 KINNSN---NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K + I + K P ++ + AN+ EL H L + + C+W+K
Sbjct: 199 KEEDEEVKPVIIAETKRPAHLKVIKANAEELAAHEQYLDGLGEA----CLWRK 247
>gi|24374102|ref|NP_718145.1| DNA polymerase III epsilon subunit DnaQ [Shewanella oneidensis
MR-1]
gi|24348589|gb|AAN55589.1| DNA polymerase III epsilon subunit DnaQ [Shewanella oneidensis
MR-1]
Length = 242
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 148/235 (62%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R ++LD ETTG+N + GHRIIEIGCVE+ NR++TG H YINPG+ + A+A+
Sbjct: 9 RQVILDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYYHQYINPGQAIDPEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIY 116
HG+T + + N+ +F +I F++++S +EI+ HNA FDV F+D E SLL T+ I
Sbjct: 69 HGITDERVANEPRFHQIAQEFIDFISGAEIVAHNANFDVSFMDHEFSLLQPLGPKTRDIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
I D+L +A+ +H G++N+LDALC RY I R HG LLDAE+LA+VYL+MT GQ+
Sbjct: 129 EILDSLDIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYLSMTGGQTKF 188
Query: 177 NFKPKI--NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
N + I+ N+ + A+++ELV H L + K +G+C+W+
Sbjct: 189 NLSNEEVGQEGGGIQRFDPTSLNLKVICASADELVMHEKRLDLVAK--SGKCLWR 241
>gi|126174224|ref|YP_001050373.1| DNA polymerase III subunit epsilon [Shewanella baltica OS155]
gi|386340982|ref|YP_006037348.1| DNA polymerase III subunit epsilon [Shewanella baltica OS117]
gi|125997429|gb|ABN61504.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS155]
gi|334863383|gb|AEH13854.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS117]
Length = 242
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 148/235 (62%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R ++LD ETTG+N I GHRIIEIGCVE+ NR++TG H YINPG+ + A+A+
Sbjct: 9 RQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINPGQAIDPEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG+T + + + +F ++ +F+N++ +EI+ HNA FDV F+D E SLL T I
Sbjct: 69 HGITDERVSKEPRFHQVAQDFINFIDGAEIVAHNANFDVSFMDHEFSLLQPRGPKTADIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+I DTL++A+ +H G++N+LDALC RY + R HG LLDAE+LA+VYL MT GQ+
Sbjct: 129 QILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYLIMTGGQTKF 188
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
N + + P ++ +K+ A+++EL H L + K +G+C+W+
Sbjct: 189 NLSNEEAGQEAGGIQRFDPQSLNLKVIGASADELTMHEQRLDLVAK--SGKCLWR 241
>gi|34496712|ref|NP_900927.1| DNA-directed DNA polymerase subunit epsilon [Chromobacterium
violaceum ATCC 12472]
gi|34102567|gb|AAQ58932.1| DNA-directed DNA polymerase, epsilon chain [Chromobacterium
violaceum ATCC 12472]
Length = 239
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 97/229 (42%), Positives = 140/229 (61%), Gaps = 3/229 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ GHRIIE +E+ R++TG +LH YI+P R+ + A +HG++
Sbjct: 2 RQIILDTETTGLDPQQGHRIIEFAGLEMVGRKLTGKHLHLYIHPEREIDPEAQRVHGISL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL K F+++ +++ ++E+IIHNA FDVGFL+ E + G K + DTL
Sbjct: 62 EFLAGKPVFAKVAHEIADFLRDAELIIHNAPFDVGFLNAEFAKAGIEPVGKLCASVIDTL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR + GKRNSLDALCDR+ I + +RTLHG L+D ELL+EVYL MTRGQ +L ++
Sbjct: 122 AEARDMFPGKRNSLDALCDRFEIDRSNRTLHGALVDCELLSEVYLWMTRGQESLAMDIEV 181
Query: 183 NNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
I+ P+K+ A+ E +H L +DK G C+W+
Sbjct: 182 ELPGGDAGAIQFERK-PLKVLAASEAEEAEHQAYLDVLDKAVKGICVWR 229
>gi|212556594|gb|ACJ29048.1| DNA polymerase III, epsilon subunit [Shewanella piezotolerans WP3]
Length = 242
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 102/235 (43%), Positives = 149/235 (63%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R I+LD ETTG+N I GHRIIEIGCVE+ NR++TG + H YINP + ++ A+ +
Sbjct: 9 RQIILDTETTGMNQSSGPIYLGHRIIEIGCVEVVNRKLTGRHYHEYINPLQPIDEEAIEV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIY 116
HG+T +F+ +K KF +I +F+ ++ +EI+ HNA FDV F+D E S+L T I
Sbjct: 69 HGITNEFVADKPKFHQIAQSFIEFIDGAEIVAHNANFDVSFMDHEFSMLQPIGPKTAEIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS-- 174
+I D+L +A+ +H G++N+LDALC RY I R LHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 QILDSLAIAKYLHPGQKNNLDALCKRYGIDNSRRDLHGALLDAEILADVYLIMTGGQTKF 188
Query: 175 NLNFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
NL+ + I K + + A+++EL +H L + K +G+CIW+
Sbjct: 189 NLSSEKAGQEGGGINRLPKDRAKLKVISASADELTRHEERLDLVAK--SGQCIWR 241
>gi|429745273|ref|ZP_19278703.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 020
str. F0370]
gi|429160714|gb|EKY03165.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 020
str. F0370]
Length = 269
Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 138/237 (58%), Gaps = 9/237 (3%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
R I+LD ETTGL G RI+E +E++ RQ+T + LH YI+P RD A A+HG+T
Sbjct: 4 ERQIILDTETTGLYPDRGDRILEFAGIEMRKRQLTDSTLHLYIHPDRDIPAEAAAVHGIT 63
Query: 62 TKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
L KN KFS + +++ +E+IIHNA FDVGFLDME +G + +T
Sbjct: 64 LDVLEEKNAPKFSAVSTQIADFLRGAELIIHNARFDVGFLDMEFERMGLPTIKELGCEVT 123
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MAR+ + G++ SLDALC+R +I + R HG L+D ELLAEVYLAMTR Q +L +
Sbjct: 124 DTLAMAREKYPGQKASLDALCNRLDIDRSKRVYHGALIDCELLAEVYLAMTREQFDLVGE 183
Query: 180 PKINNSNN-------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ K + + + A++ EL H IL +++ + GRCIW+
Sbjct: 184 SSETPNEQAASAATRQAAKTERTGRLKVIAADAGELAAHAAILDDLNQATGGRCIWQ 240
>gi|127513039|ref|YP_001094236.1| DNA polymerase III subunit epsilon [Shewanella loihica PV-4]
gi|126638334|gb|ABO23977.1| DNA polymerase III, epsilon subunit [Shewanella loihica PV-4]
Length = 242
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 152/239 (63%), Gaps = 18/239 (7%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R ++LD ETTG+N + GHRIIEIGCVE+ NR++TG + H YINP + ++ A+ +
Sbjct: 9 RQVILDTETTGMNQGAGAVYFGHRIIEIGCVEVINRKLTGRHFHEYINPMQAIDEEAITV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG+T +F+ +K F++I FL ++ +EI+ HNA FDV F+D E SLL T I
Sbjct: 69 HGITNEFVADKPVFAQIAPAFLEFIDGAEIVAHNANFDVSFMDHEFSLLTPRGPKTTDIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++ D+L +A+ +H G++N+LDALC RY I R LHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 QVLDSLEIAKFLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLIMTGGQTKF 188
Query: 177 ---NFKPKINNSNNIETKIKIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
N KP S I I++ NN P + A+++EL H L ++K +G+CIW+
Sbjct: 189 ELSNEKPG-QESGGI---IRLANNRPSLKVIGASADELNMHEQRLDLVEK--SGQCIWR 241
>gi|120599049|ref|YP_963623.1| DNA polymerase III subunit epsilon [Shewanella sp. W3-18-1]
gi|146292880|ref|YP_001183304.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens CN-32]
gi|386313573|ref|YP_006009738.1| DNA polymerase III subunit epsilon [Shewanella putrefaciens 200]
gi|120559142|gb|ABM25069.1| DNA polymerase III, epsilon subunit [Shewanella sp. W3-18-1]
gi|145564570|gb|ABP75505.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens CN-32]
gi|319426198|gb|ADV54272.1| DNA polymerase III, epsilon subunit [Shewanella putrefaciens 200]
Length = 242
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 146/235 (62%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IVLD ETTG+N + GHRIIEIGCVE+ NR++TG H YINPG+ + A+A+
Sbjct: 9 RQIVLDTETTGMNQGSGAVYLGHRIIEIGCVEVINRRLTGRYFHQYINPGQAIDPEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG+T + + N+ +F +I F+ ++ +EI+ HNA FDV F+D E S+L T I
Sbjct: 69 HGITDERVANEPRFHQIAQQFIEFIDGAEIVAHNANFDVSFMDHEFSMLPSKGPKTMDIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
I DTL +A+ +H G++N+LDALC RY I R HG LLDAE+LA+VYL MT GQ+
Sbjct: 129 DILDTLEIAKFLHPGQKNNLDALCKRYGIDNSRRHYHGALLDAEILADVYLIMTGGQTKF 188
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
N + + PN++ +K+ A+++EL H L + K +G+C+W+
Sbjct: 189 NLSNEEVGQEAGGIQRFAPNSLNLKVISASADELAMHEQRLDLVAK--SGKCLWR 241
>gi|333376608|ref|ZP_08468380.1| DNA-directed DNA polymerase III epsilon subunit [Kingella kingae
ATCC 23330]
gi|332967672|gb|EGK06783.1| DNA-directed DNA polymerase III epsilon subunit [Kingella kingae
ATCC 23330]
Length = 252
Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 146/241 (60%), Gaps = 14/241 (5%)
Query: 3 RHIVLDIETTGLN---IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHG 59
R I+LD ETTG + R+IE +E+ NRQ T NNLH YI+P RD A+A+HG
Sbjct: 7 RQIILDTETTGFEHSAAENPDRMIEFAGLEMVNRQFTKNNLHLYIHPQRDINPDAIAVHG 66
Query: 60 LTTKFLK--NKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR 117
+T + L+ N F+E+ +++ +E+IIHNA FDVGFLD E + +G K I
Sbjct: 67 ITLEKLESENAPVFAEVAQQIFDFIKGAELIIHNAKFDVGFLDAEFARVGLPK-VKTICT 125
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+ DTL MAR + G++NSLDALC+R ++ + R LHG L+D ELL EVYLAMTRGQ +L+
Sbjct: 126 VVDTLEMARDRYPGQKNSLDALCNRLDVDRSRRVLHGALIDCELLGEVYLAMTRGQFSLD 185
Query: 178 --FKPKINNSN------NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + S+ T + P + ++ A+ EL +H L+++DK +G CI++
Sbjct: 186 AAFASDVAESSASPVIATTATLLPRPEYLKVQAASPEELAEHEEYLNQLDKAVDGSCIYR 245
Query: 230 K 230
+
Sbjct: 246 Q 246
>gi|153208787|ref|ZP_01947019.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
Q177']
gi|161831371|ref|YP_001596268.1| DNA polymerase III subunit epsilon [Coxiella burnetii RSA 331]
gi|165920933|ref|ZP_02219603.1| DNA polymerase III, epsilon subunit [Coxiella burnetii Q321]
gi|120575749|gb|EAX32373.1| DNA polymerase III, epsilon subunit [Coxiella burnetii 'MSU Goat
Q177']
gi|161763238|gb|ABX78880.1| DNA polymerase III, epsilon subunit [Coxiella burnetii RSA 331]
gi|165916781|gb|EDR35385.1| DNA polymerase III, epsilon subunit [Coxiella burnetii Q321]
Length = 232
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 149/232 (64%), Gaps = 10/232 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL +GHRIIEIG +E+ NR++TGN+LH+YINP R E+ A+ IHG+T
Sbjct: 2 RQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPERSIERDAIEIHGITD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG--YSNFTKYIYRITD 120
FL +K F +I ++++ +E+IIHNA FDVGFL+ EL L G + T Y ++ D
Sbjct: 62 SFLIDKPLFKDIATELISFLKGAELIIHNAPFDVGFLNHELKLTGQSFKTLTHYC-QVLD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +AR+ H G+ N+LDALC RY++ +R HG LLDAELLA+VYL MT GQ+ L F+
Sbjct: 121 TLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGGQTVL-FEQ 179
Query: 181 K----INNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + S ++ +++ + AN+ E H L + + NG C+W
Sbjct: 180 QGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTE--NGLCLW 229
>gi|451970893|ref|ZP_21924117.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus E0666]
gi|451933310|gb|EMD80980.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus E0666]
Length = 240
Score = 191 bits (486), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 104/237 (43%), Positives = 147/237 (62%), Gaps = 16/237 (6%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N G HRIIEIG VEI NR++TG + H Y+ P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQPEAVEV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--I 115
HG+T +FL +K +++ + FL ++ +E++ HNA FD GF+D E +L SN K
Sbjct: 71 HGITDEFLVDKPEYASVHQEFLEFIKGAELVAHNAPFDTGFMDYEFGMLD-SNIGKTDDY 129
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 130 CKVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLFMTGGQTS 189
Query: 176 LNFKPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
L F +ET +I +K+ A+++EL H L ++ CIW +
Sbjct: 190 LEFNAN-KQEGGVETIRRIEGRKALKVLRASADELEAHQKRLELVND-----CIWHQ 240
>gi|416103255|ref|ZP_11589248.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
gi|348007990|gb|EGY48269.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype c str. SCC2302]
Length = 262
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 144/229 (62%), Gaps = 9/229 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K FS++ + F+ Y+ +E++IHNA FDVGF+D E + L T I +
Sbjct: 69 GITDEMLADKPDFSQVANQFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICLV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GK+N+LDALC R I RTLHG LLDA++LA+VYLAMT GQ++L
Sbjct: 129 TDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDADILADVYLAMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHS 222
+P+I +++ + +N+ + EL H L I+K +
Sbjct: 189 ESEPEIIQHAGEQQVQSTVVFSHNLRLLTPTEEELQAHLEYLKLINKKA 237
>gi|416893055|ref|ZP_11924341.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus
ATCC 33389]
gi|347814083|gb|EGY30733.1| DNA polymerase III subunit epsilon [Aggregatibacter aphrophilus
ATCC 33389]
Length = 271
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 125/178 (70%), Gaps = 4/178 (2%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPIDPEAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K FS+I + F+ Y+ +E++IHNA FDVGF+D E L T I +
Sbjct: 69 GITDEMLADKPDFSQIANEFIEYIKGAELLIHNAPFDVGFMDYEFRKLNLPIKTNDICTV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
TDTL+MAR+++ GK+N+LDALC R +I RTLHG LLD+E+LA+VYLAMT GQ++L
Sbjct: 129 TDTLVMARQMYPGKKNNLDALCSRLDIDNSKRTLHGALLDSEILADVYLAMTGGQTSL 186
>gi|209364170|ref|YP_001425094.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
5J108-111]
gi|212213173|ref|YP_002304109.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
gi|212218153|ref|YP_002304940.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
gi|215918940|ref|NP_819360.2| DNA polymerase III subunit epsilon [Coxiella burnetii RSA 493]
gi|206583825|gb|AAO89874.2| DNA polymerase III, epsilon chain [Coxiella burnetii RSA 493]
gi|207082103|gb|ABS77173.2| DNA polymerase III, epsilon chain [Coxiella burnetii Dugway
5J108-111]
gi|212011583|gb|ACJ18964.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuG_Q212]
gi|212012415|gb|ACJ19795.1| DNA polymerase III, epsilon chain [Coxiella burnetii CbuK_Q154]
Length = 236
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 149/232 (64%), Gaps = 10/232 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL +GHRIIEIG +E+ NR++TGN+LH+YINP R E+ A+ IHG+T
Sbjct: 6 RQIVLDTETTGLVPEEGHRIIEIGALEMVNRRLTGNHLHFYINPERSIERDAIEIHGITD 65
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG--YSNFTKYIYRITD 120
FL +K F +I ++++ +E+IIHNA FDVGFL+ EL L G + T Y ++ D
Sbjct: 66 SFLIDKPLFKDIATELISFLKGAELIIHNAPFDVGFLNHELKLTGQSFKTLTHYC-QVLD 124
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL +AR+ H G+ N+LDALC RY++ +R HG LLDAELLA+VYL MT GQ+ L F+
Sbjct: 125 TLTIARQKHPGQHNNLDALCRRYHVDNSNRDYHGALLDAELLAQVYLLMTGGQTVL-FEQ 183
Query: 181 K----INNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + S ++ +++ + AN+ E H L + + NG C+W
Sbjct: 184 QGFAVASRSVSVRPLGTDRDSLSVIRANAAETEAHRAFLQLLTE--NGLCLW 233
>gi|416090055|ref|ZP_11588024.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
gi|348009273|gb|EGY49439.1| DNA polymerase III, epsilon subunit [Aggregatibacter
actinomycetemcomitans serotype b str. I23C]
Length = 262
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 102/229 (44%), Positives = 143/229 (62%), Gaps = 9/229 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVEMINRRYTGNNFHIYIKPNRPVDPDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K FS+ + F+ Y+ +E++IHNA FDVGF+D E + L T I +
Sbjct: 69 GITDEMLADKPDFSQAANEFIEYIKGAELLIHNAPFDVGFMDYEFAKLNLPIKTNDICLV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GK+N+LDALC R I RTLHG LLDAE+LA+VYLAMT GQ++L
Sbjct: 129 TDTLTMARQMYPGKKNNLDALCSRLGIDNSKRTLHGALLDAEILADVYLAMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHS 222
+P+I +++ + +N+ + EL H L I+K +
Sbjct: 189 ESEPEIIQHAGEQQVQSAVVFSHNLRLLTPTEEELQAHLEYLKLINKKA 237
>gi|359396686|ref|ZP_09189737.1| DNA polymerase III subunit epsilon [Halomonas boliviensis LC1]
gi|357969364|gb|EHJ91812.1| DNA polymerase III subunit epsilon [Halomonas boliviensis LC1]
Length = 246
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 89/184 (48%), Positives = 123/184 (66%), Gaps = 6/184 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R ++LD ETTG++ DGHR++EIG +E+ NR+ TG H YINP R + +A+HG+
Sbjct: 1 MMRQVILDTETTGIDPKDGHRLVEIGAIEMVNRRFTGRTYHQYINPERHIDAEVVAVHGI 60
Query: 61 TTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT- 119
+ N+ F++I D F ++ +E++IHNA FDVGF+D EL +L + + ++
Sbjct: 61 DNAKVANEPVFAKIADEFWAFIEGAELVIHNAPFDVGFIDHELGMLNRQRKSPVLGPVSD 120
Query: 120 -----DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
DTL MARK+H G+RNSLDALC RY+I HR LHG LLD+E+LAEVYLAMT GQ+
Sbjct: 121 HCGVLDTLTMARKMHPGQRNSLDALCKRYDIDNGHRVLHGALLDSEILAEVYLAMTGGQT 180
Query: 175 NLNF 178
L
Sbjct: 181 ALTL 184
>gi|406946549|gb|EKD77718.1| DNA polymerase III epsilon subunit [uncultured bacterium]
Length = 216
Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 93/212 (43%), Positives = 134/212 (63%), Gaps = 6/212 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL + +GHR+IEIGC+E+ NR+ T + H+Y+NP + A+ +HG+T
Sbjct: 2 RQIVLDTETTGLEVEEGHRLIEIGCIEMVNRRFTNRHFHFYVNPDHAVDLGAMKVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FLK+K +F+ I D LN+++N+E+IIHNA FD+GFL E + L + DTL
Sbjct: 62 EFLKDKPRFANIADALLNFIANAELIIHNAEFDLGFLTAEFTRL---KIKWKPSSVIDTL 118
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+AR +H G++NSLD LC RY + R LHG LLDA+LLA VYL MT GQ+ L + +
Sbjct: 119 SLARNLHPGQKNSLDILCKRYGVDNTQRDLHGALLDAKLLASVYLQMTSGQTQLFDESSV 178
Query: 183 NNSNNIE---TKIKIPNNIPIKLANSNELVQH 211
+ ++ TK +++P+ EL H
Sbjct: 179 KVTTVLQDHSTKSVFFDDLPVIAPTEEELAAH 210
>gi|90414055|ref|ZP_01222038.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
gi|90324850|gb|EAS41378.1| DNA polymerase III subunit epsilon [Photobacterium profundum 3TCK]
Length = 246
Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 147/239 (61%), Gaps = 12/239 (5%)
Query: 2 HRHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IVLD ETTG+N+ +GH IIEIG VEI NR++TGN+ H YI P R E A+ +
Sbjct: 10 QRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPDRTIEVEAIGV 69
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL K + E+ D FL ++ +E++ HNA FDVGF+D E L + T+
Sbjct: 70 HGITDEFLIGKPVYKEVHDEFLEFIKGAELVAHNAPFDVGFMDYEFRKLNPNIGKTEDFC 129
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 130 KVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 189
Query: 177 NFKPKINNSN---NIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + E K P +K+ A+++E+ H L I K G +W++
Sbjct: 190 ALSAEREDRDAGTGSEIKRIAPGRKLLKVLHASADEIEAHESRLDIISK--KGDVMWRQ 246
>gi|359785344|ref|ZP_09288496.1| DNA polymerase III subunit epsilon [Halomonas sp. GFAJ-1]
gi|359297273|gb|EHK61509.1| DNA polymerase III subunit epsilon [Halomonas sp. GFAJ-1]
Length = 245
Score = 191 bits (484), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 93/205 (45%), Positives = 133/205 (64%), Gaps = 8/205 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG++ DGHR++EIG VE+ NR+ TG H YINP R + +A+HG+
Sbjct: 2 RQVILDTETTGIDPKDGHRLVEIGAVEMINRRFTGRTYHQYINPERHIDAEVVAVHGIDD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI------Y 116
+ N+ F+EI + F ++ +E++IHNA FDVGF+D EL++L + +
Sbjct: 62 AKVANEPVFAEIAEAFWAFIDGAELVIHNAPFDVGFIDHELTMLSQRHKAPVLGPVREHC 121
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
RI DTL+MAR+ H G+RN+LDALC RY+I HR LHG LLDAE+LAEVYLAMT GQ+ L
Sbjct: 122 RILDTLVMAREKHPGQRNNLDALCKRYDIDNGHRVLHGALLDAEILAEVYLAMTGGQTAL 181
Query: 177 NFKPKINNSNNIETKIKIPNNIPIK 201
+ S+N + + + + +K
Sbjct: 182 IL--DADTSSNKQQQQQATEGLAVK 204
>gi|373949361|ref|ZP_09609322.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
gi|386324801|ref|YP_006020918.1| DNA polymerase III subunit epsilon [Shewanella baltica BA175]
gi|333818946|gb|AEG11612.1| DNA polymerase III, epsilon subunit [Shewanella baltica BA175]
gi|373885961|gb|EHQ14853.1| DNA polymerase III, epsilon subunit [Shewanella baltica OS183]
Length = 242
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 148/235 (62%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R ++LD ETTG+N I GHRIIEIGCVE+ NR++TG H YINPG+ + A+A+
Sbjct: 9 RQVILDTETTGMNQGSGAIYLGHRIIEIGCVEVVNRRLTGRYYHQYINPGQTIDPEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG+T + + + +F ++ +F+N++ +EI+ HNA FDV F+D E SLL T I
Sbjct: 69 HGITDERVSKEPRFHQVAQDFINFIDGAEIVAHNANFDVSFMDHEFSLLQPRGPKTADIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+I DTL++A+ +H G++N+LDALC RY + R HG LLDAE+LA+VYL MT GQ+
Sbjct: 129 QILDTLVIAKFLHPGQKNNLDALCKRYGVDTSRREYHGALLDAEILADVYLIMTGGQTKF 188
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
N + + P ++ +K+ A+++EL H L + K +G+C+W+
Sbjct: 189 NLSNEEAGQEAGGIQRFDPQSLNLKVIGASADELNMHEQRLDLVAK--SGKCLWR 241
>gi|52425625|ref|YP_088762.1| DNA polymerase III subunit epsilon [Mannheimia succiniciproducens
MBEL55E]
gi|52307677|gb|AAU38177.1| DnaQ protein [Mannheimia succiniciproducens MBEL55E]
Length = 260
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 100/242 (41%), Positives = 150/242 (61%), Gaps = 12/242 (4%)
Query: 1 MHRHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALA 56
++R I+LD ETTG+N +GH IIEIG VE+ NR+ TG LH YI P R + A+
Sbjct: 7 LNRQILLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRYTGRKLHLYIKPDRLVDPEAIK 66
Query: 57 IHGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY 116
+HG+T + L++K F+E+ F++++ +E++IHNA FDVGF+D E T I
Sbjct: 67 VHGITDEMLEDKPVFTEVAQEFIDFIKGAELLIHNAPFDVGFMDYEFRKHHIDVKTADIC 126
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+TDTL +AR+++ GKRNSLDALCDR I R LHG LLDAE+L +VYL MT GQ++L
Sbjct: 127 SVTDTLQLARQMYPGKRNSLDALCDRLGIDNTKRVLHGALLDAEILGDVYLVMTGGQTSL 186
Query: 177 --NFKPKINNSNNIETKI------KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ +P++ + ++ + I K+ +++ + EL H + I+K S C+W
Sbjct: 187 FDDNEPELADIHSAKAHILAQNADKVAHHLSLLQPTDEELQAHLEYIKLINKKSKDNCLW 246
Query: 229 KK 230
+K
Sbjct: 247 EK 248
>gi|91223500|ref|ZP_01258765.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
gi|254228411|ref|ZP_04921837.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
gi|262393546|ref|YP_003285400.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
gi|269966277|ref|ZP_06180366.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
gi|91191586|gb|EAS77850.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 12G01]
gi|151938999|gb|EDN57831.1| DNA polymerase III, epsilon subunit [Vibrio sp. Ex25]
gi|262337140|gb|ACY50935.1| DNA polymerase III epsilon subunit [Vibrio sp. Ex25]
gi|269829192|gb|EEZ83437.1| DNA polymerase III subunit epsilon [Vibrio alginolyticus 40B]
Length = 240
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 102/236 (43%), Positives = 146/236 (61%), Gaps = 14/236 (5%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N G HRIIEIG VEI NR++TG + H Y+ P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNREGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQPEAVEV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K +++ + FL ++ +E++ HNA FD GF+D E +L + T
Sbjct: 71 HGITDEFLVDKPEYASVHQEFLEFIKGAELVAHNAPFDTGFMDYEFGMLDPNIGKTDDYC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLFMTGGQTSL 190
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
F +ET +I +K+ A+++EL H L ++ CIW +
Sbjct: 191 EFNAN-KQEGGVETIRRIEGRKALKVLRASADELEAHQKRLELVND-----CIWHQ 240
>gi|54310042|ref|YP_131062.1| DNA polymerase III subunit epsilon [Photobacterium profundum SS9]
gi|46914481|emb|CAG21260.1| Putative DNA polymerase III, epsilon subunit [Photobacterium
profundum SS9]
Length = 246
Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 107/239 (44%), Positives = 151/239 (63%), Gaps = 12/239 (5%)
Query: 2 HRHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IVLD ETTG+N+ +GH IIEIG VEI NR++TGN+ H YI P R E A+ +
Sbjct: 10 QRIIVLDTETTGMNMTGPHYEGHCIIEIGAVEIINRKLTGNSFHVYIKPDRTIEVEAIGV 69
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL K + E+ D FL ++ +E++ HNA FDVGF+D E L + T+
Sbjct: 70 HGITDEFLIGKPVYKEVHDEFLEFIKGAELVAHNAPFDVGFMDYEFRKLNPNIGKTEDFC 129
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 130 KVTDTLAMAKKIFPGKRNNLDILCSRYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 189
Query: 177 NFKPKINNSN-NIETKIK-IPNN---IPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + E++IK I + + + A+++E+ H L I K S+ +W++
Sbjct: 190 ALSAEREDRDAGTESEIKRIASGRKLLKVLHASADEIEAHESRLDIISKKSD--VMWRQ 246
>gi|153840553|ref|ZP_01993220.1| DNA polymerase III, epsilon subunit, partial [Vibrio
parahaemolyticus AQ3810]
gi|149745784|gb|EDM56914.1| DNA polymerase III, epsilon subunit [Vibrio parahaemolyticus
AQ3810]
Length = 229
Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 103/234 (44%), Positives = 143/234 (61%), Gaps = 14/234 (5%)
Query: 5 IVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHG 59
+VLD ETTG+N G HRIIEIG VEI NR++TG + H YI P R+ + A+ +HG
Sbjct: 2 VVLDTETTGMNQEGGPHYLGHRIIEIGAVEIINRKLTGRHFHVYIKPDREIQPEAIQVHG 61
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYIYRI 118
+T +FL +K +++ I FL+++ +E++ HNA FD GF+D E L T ++
Sbjct: 62 ITDEFLVDKPEYASIHQEFLDFIKGAELVAHNAPFDTGFMDYEFEKLDPIIGKTDDYCKV 121
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L F
Sbjct: 122 TDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLEF 181
Query: 179 KPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ET +I +K+ A ++EL H L ++ CIW +
Sbjct: 182 NAN-KQEGGVETIRRIEGRKALKVLRATADELEAHQKRLELVND-----CIWHQ 229
>gi|441505447|ref|ZP_20987431.1| DNA polymerase III epsilon subunit [Photobacterium sp. AK15]
gi|441426838|gb|ELR64316.1| DNA polymerase III epsilon subunit [Photobacterium sp. AK15]
Length = 243
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 101/239 (42%), Positives = 152/239 (63%), Gaps = 11/239 (4%)
Query: 2 HRHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IV D ETTG+N+ +GHRIIEIG VEI NR++TGN+ H YI P R+ + A+ +
Sbjct: 6 ERIIVFDTETTGMNMTGPHYEGHRIIEIGAVEIINRKLTGNSFHVYIKPDREIDLEAIDV 65
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL++K +++I + F+ ++ +E++ HNA FD+GF+D E L S T+
Sbjct: 66 HGITDEFLQDKPTYADIHEEFMEFIRGAELVAHNAPFDIGFMDYEFRKLDPSIGKTEDFC 125
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+++ GKRN+LD LC RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 126 KVTDTLDMAKRLFPGKRNNLDVLCSRYGIDNSHRTLHGALLDAEILADVYLMMTGGQTSL 185
Query: 177 NFKPKINNSNN-IETKIKI----PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ E+ I+ + I A+++E+ H L I+K + IW++
Sbjct: 186 ALSSGDSEGDSGAESTIRRLASGRKALKIIRASADEIQAHEARLDLIEKKGD-VTIWRQ 243
>gi|329118044|ref|ZP_08246757.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
bacilliformis ATCC BAA-1200]
gi|327465932|gb|EGF12204.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
bacilliformis ATCC BAA-1200]
Length = 247
Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 139/236 (58%), Gaps = 8/236 (3%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
R I+LD ETTGL G RI+E +E++ R++T LH YI+P RD + A A+HG+T
Sbjct: 4 ERQIILDTETTGLYSDRGDRILEFAGIEMRKRRLTERTLHLYIHPDRDIPEEAAAVHGIT 63
Query: 62 TKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
L KN KF+ + +++ +E+IIHNA FDVGFLDME +G + +T
Sbjct: 64 LDTLAEKNAPKFAAVGQEIADFLRGAELIIHNARFDVGFLDMEFERMGLPTIEELGCEVT 123
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MAR+ + G++ SLDALC R +I + R HG L+D ELLAEVYLAMTR Q +L
Sbjct: 124 DTLAMAREKYPGQKASLDALCGRLDIDRSKRVYHGALIDCELLAEVYLAMTREQFDLVGG 183
Query: 180 PKINNSNNIE--TKIKIP----NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
NN + T+ P + + A++ EL H IL +I++ + G C+W+
Sbjct: 184 SDDNNGDTPAQNTRTAAPLVRTGRLKVIKADATELAAHAAILDEINQATGGHCLWQ 239
>gi|304387081|ref|ZP_07369332.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
meningitidis ATCC 13091]
gi|385855550|ref|YP_005902063.1| DNA polymerase III subunit epsilon [Neisseria meningitidis
M01-240355]
gi|416177271|ref|ZP_11610012.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190]
gi|416191485|ref|ZP_11616111.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
ES14902]
gi|421563705|ref|ZP_16009521.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM2795]
gi|421907264|ref|ZP_16337146.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
alpha704]
gi|433492904|ref|ZP_20449993.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM586]
gi|433502390|ref|ZP_20459360.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM126]
gi|304338830|gb|EFM04933.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
meningitidis ATCC 13091]
gi|325132669|gb|EGC55354.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M6190]
gi|325138557|gb|EGC61120.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
ES14902]
gi|325204491|gb|ADY99944.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
M01-240355]
gi|393291603|emb|CCI73133.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
alpha704]
gi|402340190|gb|EJU75393.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM2795]
gi|432227199|gb|ELK82910.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM586]
gi|432243064|gb|ELK98579.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM126]
Length = 244
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 140/233 (60%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 QVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---N 177
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGAA 183
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K+ + T+ K + + A+ NEL +H L + + CIW+K
Sbjct: 184 AEEKMETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEA----CIWRK 232
>gi|299771048|ref|YP_003733074.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter oleivorans DR1]
gi|298701136|gb|ADI91701.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter oleivorans DR1]
Length = 458
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 98/233 (42%), Positives = 142/233 (60%), Gaps = 10/233 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGR---DSEKSALAIHG 59
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + DSE IHG
Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSEN----IHG 286
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
++ FLK+K ++EI D +Y+ +EII HNA FD+ FLDME G ++ + +T
Sbjct: 287 ISDNFLKDKPLYAEIADTLFDYLKGAEIIAHNATFDMNFLDMEFRRAGLPALSE-VCEVT 345
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL +A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 346 DTLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDID 405
Query: 180 P--KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ NS N K +I ++P+ + EL H + + +K C++ K
Sbjct: 406 ALSQSENSQNTTNKTRIQIDLPVIYPSEEELNTHETWVKEFEKKHGEPCLFAK 458
>gi|402758559|ref|ZP_10860815.1| hypothetical protein ANCT7_12811 [Acinetobacter sp. NCTC 7422]
Length = 452
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 144/235 (61%), Gaps = 14/235 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGR---DSEKSALAIHG 59
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + DSE +HG
Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINPEKAVGDSEN----VHG 280
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
++ FLK+K K++EI D Y+ +EII HNA FD+ FLDME G ++ + +T
Sbjct: 281 ISDDFLKDKPKYAEIADTLFAYLKGAEIIAHNATFDMNFLDMEFKRTGLPPLSE-VCEVT 339
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF- 178
DTL MA+ H G++NSLDAL RY I RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 340 DTLAMAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDMD 399
Query: 179 ---KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + N S ++++ ++P+ + EL +H + + ++ C++ K
Sbjct: 400 ALSQTEQNQSKTTRQRVQV--DLPVIEPSEQELNEHETWVKQFEQKHGEPCLFAK 452
>gi|421566914|ref|ZP_16012655.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM3001]
gi|402344857|gb|EJU79990.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM3001]
Length = 244
Score = 189 bits (481), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 140/233 (60%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 EVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---N 177
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGAA 183
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K+ + T+ K + + A+ NEL +H L + + CIW+K
Sbjct: 184 AEEKMETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEA----CIWRK 232
>gi|389795685|ref|ZP_10198799.1| DNA polymerase III subunit epsilon [Rhodanobacter fulvus Jip2]
gi|388430337|gb|EIL87511.1| DNA polymerase III subunit epsilon [Rhodanobacter fulvus Jip2]
Length = 243
Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 142/232 (61%), Gaps = 4/232 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL + GHR++EI CVE+ R++TG Y+NP R ++ A + G+
Sbjct: 2 RQVVLDTETTGLEVRQGHRLVEIACVEMVERRLTGRYYQTYLNPDRAIDEGARMVTGIED 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYIYRITDT 121
FL +K F ++ + FL ++ +E++IHNA+FD+GFLD EL+ LG + + DT
Sbjct: 62 AFLLDKPHFEDVAEEFLAFIDGAELVIHNASFDIGFLDAELARLGEQAGRVGDRCAVLDT 121
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS--NLNFK 179
L MAR++ G+RN+LDALC R + R LHGGL+DA+LLA+VYLAMT GQ +L F+
Sbjct: 122 LKMARELFPGQRNNLDALCKRLGVDNSRRDLHGGLIDAQLLADVYLAMTSGQVAFDLGFE 181
Query: 180 PKINN-SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + S + + + + A++ E+ H L+ +DK + +W++
Sbjct: 182 DEADTRSTTVAVPLSLQERPRVLRASAEEVEAHQGRLAALDKSAADGSLWRR 233
>gi|119775015|ref|YP_927755.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
gi|119767515|gb|ABM00086.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
Length = 242
Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 98/236 (41%), Positives = 147/236 (62%), Gaps = 12/236 (5%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R I+LD ETTG+N + GHRIIEIGCVE+ NR++TG H YINPG+ ++ A+A+
Sbjct: 9 RQIILDTETTGMNQGAGAVYLGHRIIEIGCVEVVNRRLTGRTFHQYINPGQAIDEEAIAV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIY 116
HG+T + + +F EIV FL+++ +E++ HNA+FD+ F++ E S+L + I
Sbjct: 69 HGITNDRVAGEPRFHEIVGGFLDFIRGAELVAHNASFDMSFINHEFSMLVPQGPKVEDIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ D+L +A+ +H G++N+LDALC RY I RT HG LLDAE+LA+VYL MT GQ+
Sbjct: 129 TVLDSLAIAKFLHPGQKNNLDALCKRYGIDNTRRTYHGALLDAEILADVYLVMTGGQTKF 188
Query: 177 NFKPKINNSNNIETKIKIPNNIP---IKLANSNELVQHNMILSKIDKHSNGRCIWK 229
N S I++ +N P + A ++EL H L + K +G+C+W+
Sbjct: 189 NLHAD-EGSQEQGGIIRLDSNRPSLKVVRATADELGNHEKRLDLVGK--SGKCLWR 241
>gi|385340392|ref|YP_005894264.1| DNA polymerase III subunit epsilon [Neisseria meningitidis G2136]
gi|416202579|ref|ZP_11619997.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
961-5945]
gi|433469695|ref|ZP_20427110.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 98080]
gi|433509102|ref|ZP_20465974.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 12888]
gi|433511716|ref|ZP_20468536.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 4119]
gi|325142705|gb|EGC65085.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
961-5945]
gi|325198636|gb|ADY94092.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis G2136]
gi|432202462|gb|ELK58525.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 98080]
gi|432246363|gb|ELL01814.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 4119]
gi|432247275|gb|ELL02713.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 12888]
Length = 244
Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 140/233 (60%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 EVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---N 177
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGEA 183
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K+ + T+ K + + A+ NEL +H L + + CIW+K
Sbjct: 184 AEEKMETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEA----CIWRK 232
>gi|153835770|ref|ZP_01988437.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01]
gi|156975479|ref|YP_001446386.1| DNA polymerase III subunit epsilon [Vibrio harveyi ATCC BAA-1116]
gi|148867537|gb|EDL66875.1| DNA polymerase III, epsilon subunit [Vibrio harveyi HY01]
gi|156527073|gb|ABU72159.1| hypothetical protein VIBHAR_03210 [Vibrio harveyi ATCC BAA-1116]
Length = 238
Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 126/182 (69%), Gaps = 6/182 (3%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N+ G HRIIEIG VEI NR++TG + H Y+ P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQPDAIGV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K ++S + FL+++ +E++ HNA FD GF+D E +L S T
Sbjct: 71 HGITDEFLVDKPEYSAVHQEFLDFIKGAELVAHNAPFDTGFMDYEFEMLNPSIGKTDDYC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NF 178
F
Sbjct: 191 EF 192
>gi|388602547|ref|ZP_10160943.1| DNA polymerase III subunit epsilon [Vibrio campbellii DS40M4]
Length = 238
Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 126/182 (69%), Gaps = 6/182 (3%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N+ G HRIIEIG VEI NR++TG + H Y+ P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQPDAIGV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K ++S + FL+++ +E++ HNA FD GF+D E +L S T
Sbjct: 71 HGITDEFLVDKPEYSAVHQEFLDFIKGAELVAHNAPFDTGFMDYEFEMLNPSIGKTDGYC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NF 178
F
Sbjct: 191 EF 192
>gi|416182441|ref|ZP_11612067.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399]
gi|433495029|ref|ZP_20452095.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM762]
gi|433497198|ref|ZP_20454232.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M7089]
gi|433499265|ref|ZP_20456272.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M7124]
gi|433501230|ref|ZP_20458214.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM174]
gi|325134669|gb|EGC57309.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13399]
gi|432229417|gb|ELK85105.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM762]
gi|432232911|gb|ELK88546.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M7089]
gi|432233692|gb|ELK89318.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M7124]
gi|432235036|gb|ELK90655.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM174]
Length = 244
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 140/235 (59%), Gaps = 9/235 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+ R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGL
Sbjct: 2 IQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGL 61
Query: 61 TTKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
T + L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +
Sbjct: 62 TIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTV 121
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 122 TDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMG 181
Query: 177 -NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K+ + T+ K + + A+ NEL H L + + CIW+K
Sbjct: 182 AAAEEKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEA----CIWRK 232
>gi|285017397|ref|YP_003375108.1| DNA polymerase III subunit epsilon [Xanthomonas albilineans GPE
PC73]
gi|283472615|emb|CBA15120.1| probable dna polymerase III, epsilon subunit protein [Xanthomonas
albilineans GPE PC73]
Length = 244
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/233 (42%), Positives = 141/233 (60%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G+R++EIG VE+ R+ +G + H Y+ P D E A + GLT
Sbjct: 2 RQIILDTETTGLEWKKGNRVVEIGAVELLERRPSGRHFHRYLRPDCDFEPGAQEVTGLTL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR--ITD 120
+FL +K +F E+VD FL ++ +E++IHNA+FD+GFLD ELS LG S + + R + D
Sbjct: 62 EFLADKPEFHEVVDEFLEFIDGAELVIHNASFDLGFLDYELSRLGES-YGCILDRASVVD 120
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK- 179
TLL+AR+ G+RNSLDALC R + HR LHG LLDA++L EVY+A+T GQ + F
Sbjct: 121 TLLLARERFPGQRNSLDALCKRLGVDNAHRQLHGALLDAQILCEVYIALTSGQEEIGFAL 180
Query: 180 ----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+++ + + P L ++EL H L + K + GR +W
Sbjct: 181 VEETTGKTDAHGVAFDMATLLPRPQVLPTASELEAHQARLDTLRKKA-GRALW 232
>gi|389605328|emb|CCA44248.1| DNA polymerase III subunit epsilon [Neisseria meningitidis
alpha522]
Length = 253
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 140/235 (59%), Gaps = 9/235 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+ R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGL
Sbjct: 11 IQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGL 70
Query: 61 TTKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
T + L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +
Sbjct: 71 TIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTV 130
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 131 TDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMG 190
Query: 177 -NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K+ + T+ K + + A+ NEL H L + + CIW+K
Sbjct: 191 EAAEEKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEA----CIWRK 241
>gi|121635185|ref|YP_975430.1| DNA polymerase III subunit epsilon [Neisseria meningitidis FAM18]
gi|120866891|emb|CAM10650.1| DNA polymerase III, epsilon chain [Neisseria meningitidis FAM18]
Length = 253
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 140/235 (59%), Gaps = 9/235 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+ R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGL
Sbjct: 11 IQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGL 70
Query: 61 TTKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
T + L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +
Sbjct: 71 TIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTV 130
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 131 TDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMG 190
Query: 177 -NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K+ + T+ K + + A+ NEL H L + + CIW+K
Sbjct: 191 AAAEEKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEA----CIWRK 241
>gi|392380895|ref|YP_005030091.1| DNA polymerase III, epsilon subunit [Azospirillum brasilense Sp245]
gi|356875859|emb|CCC96607.1| DNA polymerase III, epsilon subunit [Azospirillum brasilense Sp245]
Length = 225
Score = 189 bits (479), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 98/218 (44%), Positives = 129/218 (59%), Gaps = 4/218 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG +GHR+IEIGCVE+ N TG H Y+NP RD A+A+HGLTT
Sbjct: 2 REIVLDTETTGFKPEEGHRLIEIGCVELHNHVATGKTFHCYVNPERDVPPDAVAVHGLTT 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+++V F+ ++ ++ ++IHNAAFD+ FL+ EL + GY K R DTL
Sbjct: 62 EFLSDKPLFNDVVAEFVAFIGDAPLVIHNAAFDMHFLNWELRIAGYPVMPK--DRAIDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
LMAR+ G +LDALC R+ + RT HG LLDA+LLAEVYL + G Q+ L
Sbjct: 120 LMARQKFPGAPATLDALCKRFGVDNSSRTYHGALLDAQLLAEVYLELRGGRQAGLALASG 179
Query: 182 INNSNNIETKIKIPNNIPIKLANS-NELVQHNMILSKI 218
+I P P A S EL H +L K+
Sbjct: 180 PATGGPAAIRIDRPYRAPRAHAPSEEELAAHAELLKKL 217
>gi|269960617|ref|ZP_06174989.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3]
gi|424047422|ref|ZP_17784981.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HENC-03]
gi|269834694|gb|EEZ88781.1| DNA polymerase III subunit epsilon [Vibrio harveyi 1DA3]
gi|408883915|gb|EKM22678.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HENC-03]
Length = 238
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 91/182 (50%), Positives = 126/182 (69%), Gaps = 6/182 (3%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N+ G HRI+EIG VEI NR++TG + H Y+ P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNLEGGPHYMGHRIVEIGAVEIINRKLTGRHFHVYLKPDREIQPDAIGV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K ++S + FL+++ +E++ HNA FD GF+D E +L S T
Sbjct: 71 HGITDEFLVDKPEYSAVHQEFLDFIKGAELVAHNAPFDTGFMDYEFEMLNPSIGKTDDYC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NF 178
F
Sbjct: 191 EF 192
>gi|15677367|ref|NP_274522.1| DNA polymerase III subunit epsilon [Neisseria meningitidis MC58]
gi|385323852|ref|YP_005878291.1| DNA polymerase III subunit epsilon [Neisseria meningitidis 8013]
gi|385328807|ref|YP_005883110.1| DNA polymerase III subunit epsilon [Neisseria meningitidis
alpha710]
gi|385341588|ref|YP_005895459.1| DNA polymerase III subunit epsilon [Neisseria meningitidis
M01-240149]
gi|385852879|ref|YP_005899393.1| DNA polymerase III subunit epsilon [Neisseria meningitidis H44/76]
gi|385857564|ref|YP_005904076.1| DNA polymerase III subunit epsilon [Neisseria meningitidis
NZ-05/33]
gi|416169442|ref|ZP_11608183.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
OX99.30304]
gi|416187031|ref|ZP_11614087.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579]
gi|416196003|ref|ZP_11617972.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385]
gi|421551122|ref|ZP_15997122.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 69166]
gi|427826131|ref|ZP_18993192.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
gi|433465466|ref|ZP_20422945.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM422]
gi|433471803|ref|ZP_20429186.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 68094]
gi|433473894|ref|ZP_20431253.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 97021]
gi|433477966|ref|ZP_20435283.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 70012]
gi|433482404|ref|ZP_20439662.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
2006087]
gi|433484917|ref|ZP_20442131.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
2002038]
gi|433486712|ref|ZP_20443904.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 97014]
gi|433487893|ref|ZP_20445062.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13255]
gi|433490853|ref|ZP_20447972.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM418]
gi|433505325|ref|ZP_20462263.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 9506]
gi|433507508|ref|ZP_20464413.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 9757]
gi|433526476|ref|ZP_20483105.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 69096]
gi|433539284|ref|ZP_20495758.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 70030]
gi|7226758|gb|AAF41870.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis MC58]
gi|261392239|emb|CAX49759.1| DNA polymerase III epsilon subunit [Neisseria meningitidis 8013]
gi|308389659|gb|ADO31979.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha710]
gi|316986028|gb|EFV64965.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
gi|325130586|gb|EGC53333.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
OX99.30304]
gi|325136592|gb|EGC59193.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M0579]
gi|325140658|gb|EGC63175.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis CU385]
gi|325199883|gb|ADY95338.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis H44/76]
gi|325201794|gb|ADY97248.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
M01-240149]
gi|325208453|gb|ADZ03905.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
NZ-05/33]
gi|402328656|gb|EJU64023.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 69166]
gi|432202121|gb|ELK58186.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM422]
gi|432207760|gb|ELK63748.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 68094]
gi|432208823|gb|ELK64795.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 97021]
gi|432214371|gb|ELK70272.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 70012]
gi|432215124|gb|ELK71014.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
2006087]
gi|432219154|gb|ELK75002.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
2002038]
gi|432221231|gb|ELK77044.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 97014]
gi|432224924|gb|ELK80686.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis M13255]
gi|432226619|gb|ELK82345.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM418]
gi|432240525|gb|ELK96060.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 9757]
gi|432240617|gb|ELK96151.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 9506]
gi|432260236|gb|ELL15496.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 69096]
gi|432272776|gb|ELL27882.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 70030]
Length = 244
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 139/233 (59%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 QVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---N 177
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGAA 183
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K+ + T+ K + + A+ NEL H L + + CIW+K
Sbjct: 184 AEEKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEA----CIWRK 232
>gi|425744684|ref|ZP_18862739.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-323]
gi|425490280|gb|EKU56580.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-323]
Length = 449
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 144/233 (61%), Gaps = 10/233 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGR---DSEKSALAIHG 59
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + DSE +HG
Sbjct: 222 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDSEN----VHG 277
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
++ FLK+K K++EI D Y+ +EII HNA FD+ FLDME G ++ + +T
Sbjct: 278 ISDDFLKDKPKYAEIADVLFAYLKGAEIIAHNATFDMNFLDMEFKRTGLPALSE-VCDVT 336
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MA+ H G++NSLDAL RY I RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 337 DTLAMAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDMD 396
Query: 180 P--KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + N T+ ++ ++P+ + +EL +H + + ++ C++ K
Sbjct: 397 ALSQTEQNQNKTTRQRVEVDLPVIEPSEHELNEHETWVKQFEQKHGEPCLFAK 449
>gi|384083502|ref|ZP_09994677.1| DNA polymerase III subunit epsilon [gamma proteobacterium HIMB30]
Length = 238
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/237 (42%), Positives = 142/237 (59%), Gaps = 16/237 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ DGHR+IEIGC+E+ NR++T H YINP R+ ++ A+ +HG+T
Sbjct: 2 RQIILDTETTGLDPKDGHRVIEIGCIELVNRRLTDRTFHVYINPEREIDQEAIDVHGITN 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT--- 119
+FL +K F+ I D F+ ++ +E+I HNA+FD+ FLD ELS + + I+ +
Sbjct: 62 EFLADKPNFAGIADEFVEFIRGAELIAHNASFDINFLDSELSRIPEA---PTIFALMHGG 118
Query: 120 ---DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
DTL MA++ GKRNSLDALC Y I RTLHG LLDAELL VYLAMTR QS +
Sbjct: 119 AAIDTLAMAKEKRPGKRNSLDALCRDYKIDASERTLHGALLDAELLTRVYLAMTREQSRM 178
Query: 177 NFKPKINNSNNIE----TKIKIPNNIP-IKLANSNELVQHNMILSKIDKHSNGRCIW 228
F N S ++ + +P + +EL H L+ + + + + +W
Sbjct: 179 -FGGTDNQSQGSRFEPIQRLTSVDRVPRVSQPTDSELANHQSFLNTL-RETKTQLLW 233
>gi|384228250|ref|YP_005619985.1| DNA polymerase III subunit epsilon [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
gi|345539183|gb|AEO08050.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Ua
(Uroleucon ambrosiae)]
Length = 238
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 111/236 (47%), Positives = 145/236 (61%), Gaps = 11/236 (4%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG+N I HRIIEIG VEI R+ TGNN H YI P R E AL +H
Sbjct: 5 RMIILDTETTGINKIGIPHVNHRIIEIGAVEIIERRFTGNNFHVYIKPDRLIESEALKVH 64
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-R 117
G+T FLK+K F +IV+ FL Y+ NS +IIHNA+FD+GF++ EL+LL T +
Sbjct: 65 GITNNFLKDKPIFKDIVNKFLKYIQNSTLIIHNASFDLGFINQELNLLNQKIKTIDTFCN 124
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+ DTL +ARK+ GK+N+LDALC RY I+K R LH +LDA LL +VYL MT GQ +L
Sbjct: 125 VLDTLKIARKLFPGKKNTLDALCTRYKINKSSRNLHSAILDAYLLGKVYLLMTNGQESLF 184
Query: 178 FKPKINNSNNIETKIKI--PNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
F +N+ K NIP+K+ A E+ H L + +H+ C+WK
Sbjct: 185 FNTIVNSKKISSKPKKFIRSQNIPLKILYAKKQEIDSHIKYLQYMKRHN--LCLWK 238
>gi|294141155|ref|YP_003557133.1| DNA polymerase III subunit epsilon [Shewanella violacea DSS12]
gi|293327624|dbj|BAJ02355.1| DNA polymerase III, epsilon subunit [Shewanella violacea DSS12]
Length = 242
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 100/241 (41%), Positives = 147/241 (60%), Gaps = 22/241 (9%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R I+LD ETTG+N I GHRIIEIGCVE+ NR++TG + H YINP + ++ A+ +
Sbjct: 9 RQIILDTETTGMNQAAGAIYLGHRIIEIGCVEVINRRLTGRHYHEYINPQQLIDEEAIQV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNF-TKYIY 116
HG++ +++ NK KF+EI +F+ ++ +E++ HNA+FD+ F+D E LL T I
Sbjct: 69 HGISNEYVANKPKFAEIAQSFIEFIDGAEVVAHNASFDISFMDHEFGLLRPKGPKTADIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
I DTL +A+ +H G++N+LDALC RY I R LHG LLDAE+LA+VYL MT GQ+
Sbjct: 129 GILDTLAIAKYLHPGQKNNLDALCKRYGIDNSRRELHGALLDAEILADVYLLMTGGQTKF 188
Query: 177 NFKPKINNS--------NNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
N + TK+K+ + A+++EL +H L + K G+C W
Sbjct: 189 NLSGDTGGIGAGGIIRLSQERTKLKVIS------ASADELAKHEARLDIVAK--GGQCAW 240
Query: 229 K 229
+
Sbjct: 241 R 241
>gi|421538466|ref|ZP_15984642.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 93003]
gi|421540762|ref|ZP_15986901.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 93004]
gi|421565860|ref|ZP_16011627.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM3081]
gi|402316493|gb|EJU52038.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 93003]
gi|402317800|gb|EJU53329.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 93004]
gi|402342598|gb|EJU77757.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM3081]
Length = 244
Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 139/233 (59%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 EVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---N 177
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGEA 183
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K+ + T+ K + + A+ NEL H L + + CIW+K
Sbjct: 184 AEEKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEA----CIWRK 232
>gi|421555160|ref|ZP_16001097.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 98008]
gi|402331439|gb|EJU66776.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 98008]
Length = 244
Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 139/233 (59%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAALVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 QVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---N 177
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGAA 183
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K+ + T+ K + + A+ NEL H L + + CIW+K
Sbjct: 184 AEEKMETKPVVHTETKRSGKLKVIRADENELAAHGQYLDGLGEA----CIWRK 232
>gi|114563375|ref|YP_750888.1| DNA polymerase III subunit epsilon [Shewanella frigidimarina NCIMB
400]
gi|114334668|gb|ABI72050.1| DNA polymerase III, epsilon subunit [Shewanella frigidimarina NCIMB
400]
Length = 242
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 100/235 (42%), Positives = 147/235 (62%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN-----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R ++LD ETTG+N I GHRIIEIGCVE+ NR++TG H YINPG+ ++ A+ +
Sbjct: 9 RQVILDTETTGMNQAGGPIYVGHRIIEIGCVEVINRRLTGRTYHQYINPGQAIDEEAIQV 68
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLG-YSNFTKYIY 116
HG+T + N+ +F +I +F++++ +EI+ HNA FDV F+D E S L TK I
Sbjct: 69 HGITNDRVANEPRFHQIAKDFIDFIDGAEIVAHNANFDVSFMDHEFSKLNPIGPKTKDIC 128
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
I D+L +A+++H G++N+LDALC RY I RT HG LLDAE+LA+VYL MT GQ
Sbjct: 129 SILDSLAIAKRLHPGQKNNLDALCRRYGIDNGRRTYHGALLDAEILADVYLIMTGGQIKF 188
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWK 229
N + K P+ +K+ A+++E++ H L I K +G+C+W+
Sbjct: 189 NLSNEKAGQEGGGIKNIDPSAFNLKVVGASADEILLHEQRLDLIAK--SGKCLWR 241
>gi|444427601|ref|ZP_21222976.1| DNA polymerase III subunit epsilon [Vibrio campbellii CAIM 519 =
NBRC 15631]
gi|444239125|gb|ELU50701.1| DNA polymerase III subunit epsilon [Vibrio campbellii CAIM 519 =
NBRC 15631]
Length = 238
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/183 (50%), Positives = 126/183 (68%), Gaps = 8/183 (4%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N+ G HRIIEIG VEI NR++TG + H Y+ P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQPDAIGV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL--GYSNFTKYI 115
HG+T +FL +K ++S + FL+++ +E++ HNA FD GF+D E +L G Y
Sbjct: 71 HGITDEFLVDKPEYSAVHQEFLDFIKGAELVAHNAPFDTGFMDYEFEMLNPGIGKTDDYC 130
Query: 116 YRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN 175
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++
Sbjct: 131 -KVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTS 189
Query: 176 LNF 178
L F
Sbjct: 190 LEF 192
>gi|424742955|ref|ZP_18171273.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-141]
gi|422943697|gb|EKU38709.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-141]
Length = 458
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 143/233 (61%), Gaps = 10/233 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGR---DSEKSALAIHG 59
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + DSE IHG
Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSEN----IHG 286
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
++ FLK+K ++EI D +Y+ +EII HNA FD+ FLDME G ++ + +T
Sbjct: 287 ISDNFLKDKPLYAEIADTLFDYLKGAEIIAHNATFDMNFLDMEFRRAGLPALSE-VCEVT 345
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL +A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 346 DTLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDID 405
Query: 180 P--KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ NS N K ++ ++P+ + +EL H + + ++ C++ K
Sbjct: 406 ALSQSENSQNTTNKTRVQIDLPVIFPSEDELNIHETWVKEFEEKHGEPCLFAK 458
>gi|433466554|ref|ZP_20424015.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 87255]
gi|432204664|gb|ELK60703.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 87255]
Length = 244
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 140/233 (60%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 EVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLLTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---N 177
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGEA 183
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K+ + T+ K + + A+ NEL +H L + + CIW+K
Sbjct: 184 AEEKMETKPVVHTETKRSGKLKVIRADENELAEHGQYLDGLGEA----CIWRK 232
>gi|349574568|ref|ZP_08886512.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
shayeganii 871]
gi|348013868|gb|EGY52768.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria
shayeganii 871]
Length = 251
Score = 188 bits (477), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 87/236 (36%), Positives = 144/236 (61%), Gaps = 11/236 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTG R+IE +E+ +R++TG LH Y++P RD + A+ +HG+T
Sbjct: 17 RQIILDTETTGFYYDRDDRLIEFAGLEMIDRRLTGRYLHLYVHPERDIPEEAVRVHGITL 76
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L +K KF+E+ + +++ ++++IHNAAFD+GFLDMEL G ++ +TDTL
Sbjct: 77 AQLADKPKFAEVAEEIADFIRGADLVIHNAAFDMGFLDMELGKAGLPTASQLAAEVTDTL 136
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKP 180
MA++++ G++NSLDALC R + + R HG L+D ELL+EVYL MTR Q +L F
Sbjct: 137 AMAKELYPGQKNSLDALCTRLGVDRSKRVYHGALIDCELLSEVYLGMTRSQFSLVDQFA- 195
Query: 181 KINNSNNIETKIKI------PNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
++ +I+ P ++ + A+++E+ H L +D+ ++G +W++
Sbjct: 196 --EEEADVRAEIRSAAVSERPAHLRVLQADADEMAAHEAYLDGLDQAADGGSLWRR 249
>gi|319760362|ref|YP_004124300.1| DNA polymerase III subunit epsilon [Candidatus Blochmannia vafer
str. BVAF]
gi|318039076|gb|ADV33626.1| DNA polymerase III, epsilon subunit [Candidatus Blochmannia vafer
str. BVAF]
Length = 251
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 110/248 (44%), Positives = 150/248 (60%), Gaps = 25/248 (10%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R+++LD ETTG+N +GH+IIEIG VEI NR +T N H Y+NP R + A IH
Sbjct: 7 RYVILDTETTGMNKFGIHYEGHKIIEIGAVEIINRSLTKNKFHVYLNPNRPVDSEAFKIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMEL--SLLGYSNFTKYIY 116
G++ +FLK+K FS+I + FL+++ S ++IHNA+FDVGFL+ EL + L Y Y
Sbjct: 67 GISDRFLKDKPVFSDISNKFLSFICGSNLVIHNASFDVGFLNFELRETNLKYKTLETYC- 125
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
I D+L +AR + G+RNSLDALC+RY I R LH L+DA++LA V+LAMT GQ+ +
Sbjct: 126 SIIDSLKLARNLFPGQRNSLDALCERYFIDISQRNLHNALIDAQILAYVFLAMTGGQTEM 185
Query: 177 NFKPKINN-------------SNNIETK-IKIPNNIPIKLANSNELVQHNMILSKIDKHS 222
I N S N++T+ IK N I A E HN L I+K S
Sbjct: 186 QLTNDIINLDKNTSVLSDMQRSYNVDTQEIKSLN---IIYATVEEKTNHNRYLELIEKQS 242
Query: 223 NGRCIWKK 230
G+C+WKK
Sbjct: 243 -GKCLWKK 249
>gi|255320390|ref|ZP_05361574.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
SK82]
gi|262379328|ref|ZP_06072484.1| ribonuclease HI [Acinetobacter radioresistens SH164]
gi|255302585|gb|EET81818.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
SK82]
gi|262298785|gb|EEY86698.1| ribonuclease HI [Acinetobacter radioresistens SH164]
Length = 455
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 142/219 (64%), Gaps = 14/219 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + IHG+T
Sbjct: 228 RQLILDTETTGFYFQDGDRIIEVGAIEMVNRKLTGSSIHIYINPEKPVGDS-VDIHGITD 286
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K +++EI + NY+ +EII HNA+FD+ FLDME G+ ++ + +TDTL
Sbjct: 287 EFLQDKPRYAEIAEVLFNYLKGAEIIAHNASFDMNFLDMEFKRAGFPALSE-VCEVTDTL 345
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---- 178
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 346 ALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 405
Query: 179 KPKINNSN------NIETKIKIPNNIPIKLANSNELVQH 211
+ +I+ S N++ + +P+ P +LA E VQH
Sbjct: 406 QSEISQSQASRQVINVDLPVIVPS--PEELAAHEEWVQH 442
>gi|297250280|ref|ZP_06863987.2| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC
43768]
gi|296839296|gb|EFH23234.1| DNA polymerase III, epsilon subunit [Neisseria polysaccharea ATCC
43768]
Length = 253
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/235 (40%), Positives = 140/235 (59%), Gaps = 9/235 (3%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+ R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGL
Sbjct: 11 IQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGL 70
Query: 61 TTKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
T + L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +
Sbjct: 71 TIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTV 130
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN- 177
TDTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 131 TDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMG 190
Query: 178 --FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K+ T+ K + + A+ NEL +H L + + CIW+K
Sbjct: 191 AVAEEKMETKPVAHTETKRSGKLKVIRADENELAEHGQYLDGLGES----CIWRK 241
>gi|298369358|ref|ZP_06980676.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
str. F0314]
gi|298283361|gb|EFI24848.1| DNA polymerase III, epsilon subunit [Neisseria sp. oral taxon 014
str. F0314]
Length = 240
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 141/233 (60%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NNLH YI+P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYAEGGDRLVEFAGLEMINRQMTDNNLHLYIHPERDMPEEAAKVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ ++E+IIHNA FD+GFL+ME +G + + +TD
Sbjct: 64 EVLEEKNAPPFAEVGRQIADFIRDAELIIHNAKFDIGFLNMEFRRMGLPSIEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR++ G++ SLDALC+R ++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQFDLMGGE 183
Query: 181 KINNSN---NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K + I + K P ++ + AN+ EL H L + + C+W+K
Sbjct: 184 KEEDEEVKPVIIAETKRPAHLKVIKANAEELAAHEQYLDGLGEA----CLWRK 232
>gi|301596826|ref|ZP_07241834.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB059]
Length = 438
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 211 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 269
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 270 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 328
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 329 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 388
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 389 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 438
>gi|260557363|ref|ZP_05829578.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|445451861|ref|ZP_21444854.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-A-92]
gi|260408989|gb|EEX02292.1| ribonuclease HI [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|444754904|gb|ELW79509.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-A-92]
gi|452947140|gb|EME52630.1| hypothetical protein G347_17404 [Acinetobacter baumannii MSP4-16]
Length = 459
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 410 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 459
>gi|33519691|ref|NP_878523.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia
floridanus]
gi|33517354|emb|CAD83739.1| DNA polymerase III epsilon subunit [Candidatus Blochmannia
floridanus]
Length = 258
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 106/250 (42%), Positives = 155/250 (62%), Gaps = 22/250 (8%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R++VLD ETTG+N +GHRIIEIG VEI NR++T N H Y+NP R + A AIH
Sbjct: 7 RYVVLDTETTGMNKFGVHYEGHRIIEIGAVEIINRRLTNNQFHVYLNPNRSVDSEAFAIH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-R 117
G++ +FL ++ F +I ++FL ++ S ++IHNA+FD+GFL+ EL + ++ T Y
Sbjct: 67 GISDQFLVDQPCFLDIANDFLQFIRGSTLVIHNASFDLGFLNFELHNIYLNSRTVESYCT 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+ D+L +ARKI G+RNSLDALC+RY I R LH L+DA+LLA V+L MT GQ+ +
Sbjct: 127 VIDSLKLARKIFPGQRNSLDALCERYCIKNSKRILHNALIDAQLLAYVFLVMTGGQTRIQ 186
Query: 178 FKPKINNSN-NI-------ETKIKIPNN---------IPIKLANSNELVQHNMILSKIDK 220
F ++NS+ NI + K ++ N + I A S E ++H L + K
Sbjct: 187 FMDMLDNSDTNILNNTITHDNKFELCLNNSVCTEKKSLKILYATSIEKLEHEKYLDFVMK 246
Query: 221 HSNGRCIWKK 230
SN +C+W+K
Sbjct: 247 ASNNQCLWRK 256
>gi|416212701|ref|ZP_11621992.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
M01-240013]
gi|254673235|emb|CBA08224.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha275]
gi|325144796|gb|EGC67087.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
M01-240013]
Length = 244
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 139/233 (59%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 EVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---N 177
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGAA 183
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K+ T+ K + + A+ NEL +H L + + CIW+K
Sbjct: 184 AEEKMETKPVAHTETKRSGKLKVIRADENELAEHGRYLDGLGEA----CIWRK 232
>gi|163801804|ref|ZP_02195701.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
gi|159174312|gb|EDP59116.1| DNA polymerase III subunit epsilon [Vibrio sp. AND4]
Length = 238
Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 92/182 (50%), Positives = 125/182 (68%), Gaps = 6/182 (3%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IVLD ETTG+N+ G HRIIEIG VEI NR++TG + H Y+ P R+ + A+ +
Sbjct: 11 RIIVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQPEAIGV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K +S + FL+++ +E++ HNA FD GF+D E +L + T
Sbjct: 71 HGITDEFLVDKPDYSHVHQEFLDFIKGAELVAHNAPFDTGFMDYEFEMLDPAIGKTDDFC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NF 178
F
Sbjct: 191 EF 192
>gi|126641104|ref|YP_001084088.1| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
Length = 459
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 410 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 459
>gi|262279776|ref|ZP_06057561.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
gi|262260127|gb|EEY78860.1| ribonuclease HI [Acinetobacter calcoaceticus RUH2202]
Length = 458
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 97/233 (41%), Positives = 142/233 (60%), Gaps = 10/233 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGR---DSEKSALAIHG 59
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + DSE IHG
Sbjct: 231 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSEN----IHG 286
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
++ FLK+K +++I D +Y+ +EII HNA FD+ FLDME G ++ + +T
Sbjct: 287 ISDNFLKDKPLYADIADTLFDYLKGAEIIAHNATFDMNFLDMEFRRAGLPALSE-VCEVT 345
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL +A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 346 DTLALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDID 405
Query: 180 P--KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ NS N K ++ +P+ L + EL H + + +K C++ K
Sbjct: 406 ALSQSENSLNTANKTRVQIELPVILPSEEELNTHETWVKEFEKKHGEPCLFAK 458
>gi|417551326|ref|ZP_12202404.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-18]
gi|417563743|ref|ZP_12214617.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC143]
gi|395555499|gb|EJG21500.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC143]
gi|400385781|gb|EJP48856.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-18]
Length = 459
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 410 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 459
>gi|193076772|gb|ABO11486.2| hypothetical protein A1S_1054 [Acinetobacter baumannii ATCC 17978]
Length = 497
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 328
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 329 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 387
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 388 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 447
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 448 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 497
>gi|421854781|ref|ZP_16287166.1| ribonuclease H [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
gi|403189796|dbj|GAB73367.1| ribonuclease H [Acinetobacter radioresistens DSM 6976 = NBRC
102413]
Length = 455
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 142/219 (64%), Gaps = 14/219 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + IHG+T
Sbjct: 228 RQLILDTETTGFYFQDGDRIIEVGAIEMVNRKLTGSSIHIYINPEKPVGDS-VDIHGITD 286
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K +++EI + NY+ +EII HNA+FD+ FLDME G+ ++ + +TDTL
Sbjct: 287 EFLQDKPRYAEIAEVLFNYLKGAEIIAHNASFDMNFLDMEFKRAGFPALSE-VCEVTDTL 345
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---- 178
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 346 ALAKSKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 405
Query: 179 KPKINNSN------NIETKIKIPNNIPIKLANSNELVQH 211
+ +I+ S N++ + +P+ P +LA E VQH
Sbjct: 406 QSEISQSQASRQVINVDLPVIMPS--PEELAAHEEWVQH 442
>gi|421789662|ref|ZP_16225911.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-82]
gi|424060619|ref|ZP_17798110.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Ab33333]
gi|404668571|gb|EKB36480.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Ab33333]
gi|410397901|gb|EKP50138.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-82]
Length = 459
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 410 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 459
>gi|421651165|ref|ZP_16091536.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC0162]
gi|425749509|ref|ZP_18867486.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-348]
gi|445456437|ref|ZP_21445883.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC047]
gi|408508567|gb|EKK10248.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC0162]
gi|425488855|gb|EKU55180.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-348]
gi|444778383|gb|ELX02401.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC047]
Length = 459
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 410 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 459
>gi|332852350|ref|ZP_08434135.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6013150]
gi|332870148|ref|ZP_08439060.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6013113]
gi|332875093|ref|ZP_08442929.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6014059]
gi|384142489|ref|YP_005525199.1| hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
gi|332729293|gb|EGJ60634.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6013150]
gi|332732415|gb|EGJ63671.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6013113]
gi|332736710|gb|EGJ67701.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
6014059]
gi|347592982|gb|AEP05703.1| conserve hypothetical protein [Acinetobacter baumannii MDR-ZJ06]
Length = 497
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 270 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 328
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 329 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 387
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 388 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 447
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 448 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 497
>gi|421624925|ref|ZP_16065785.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC098]
gi|421661347|ref|ZP_16101523.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC110]
gi|421696113|ref|ZP_16135703.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-692]
gi|421807622|ref|ZP_16243482.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC035]
gi|404563049|gb|EKA68260.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-692]
gi|408700118|gb|EKL45582.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC098]
gi|408715759|gb|EKL60881.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC110]
gi|410416603|gb|EKP68375.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC035]
Length = 459
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 410 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 459
>gi|384227111|ref|YP_005618861.1| DNA polymerase III subunit epsilon [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
gi|311085987|gb|ADP66069.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LL01
(Acyrthosiphon pisum)]
Length = 237
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 130/203 (64%), Gaps = 7/203 (3%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG+N HRIIEIG VEI +R TGNN H YI PGR E AL +H
Sbjct: 5 RTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQPGRSIESGALKVH 64
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T KFL +K F +I D+FLNY+ NS ++IHNA+FDVGF++ EL +L I
Sbjct: 65 GITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFCSI 124
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL MARK+ GK+N+LDALC RY I+K HR LH ++D+ LL ++YL MT GQ +L
Sbjct: 125 VDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQDSLFS 184
Query: 179 KPKINNSNNIETKIKIPNNIPIK 201
IN N + K+ NI +K
Sbjct: 185 DNTINYKENFK---KLKKNIQLK 204
>gi|145641463|ref|ZP_01797041.1| DNA polymerase III subunit epsilon [Haemophilus influenzae R3021]
gi|145273754|gb|EDK13622.1| DNA polymerase III subunit epsilon [Haemophilus influenzae 22.4-21]
Length = 205
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/181 (51%), Positives = 125/181 (69%), Gaps = 4/181 (2%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG++ + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMSQLGAHYEGHCIIEIGAVELINRRYTGNNFHIYIKPDRPVDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F E+ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT G+ +
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGKQIYSM 185
Query: 179 K 179
K
Sbjct: 186 K 186
>gi|417552985|ref|ZP_12204055.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-81]
gi|417563225|ref|ZP_12214104.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC137]
gi|421198333|ref|ZP_15655499.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC109]
gi|421454528|ref|ZP_15903875.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-123]
gi|421634687|ref|ZP_16075301.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-13]
gi|421805528|ref|ZP_16241410.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-A-694]
gi|395525807|gb|EJG13896.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC137]
gi|395566020|gb|EJG27666.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC109]
gi|400212318|gb|EJO43277.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-123]
gi|400393244|gb|EJP60290.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-81]
gi|408704220|gb|EKL49593.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-13]
gi|410408603|gb|EKP60561.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-A-694]
Length = 459
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 410 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 459
>gi|169796679|ref|YP_001714472.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter baumannii AYE]
gi|184157414|ref|YP_001845753.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii ACICU]
gi|213156097|ref|YP_002318517.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii AB0057]
gi|215484167|ref|YP_002326392.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
AB307-0294]
gi|301344775|ref|ZP_07225516.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB056]
gi|301510946|ref|ZP_07236183.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB058]
gi|384131074|ref|YP_005513686.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii 1656-2]
gi|385236816|ref|YP_005798155.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii
TCDC-AB0715]
gi|387124633|ref|YP_006290515.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii MDR-TJ]
gi|407932156|ref|YP_006847799.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii TYTH-1]
gi|416149170|ref|ZP_11602731.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB210]
gi|417546648|ref|ZP_12197734.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC032]
gi|417567921|ref|ZP_12218787.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC189]
gi|417571711|ref|ZP_12222565.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Canada BC-5]
gi|417578804|ref|ZP_12229637.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Naval-17]
gi|417869349|ref|ZP_12514340.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH1]
gi|417872816|ref|ZP_12517706.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH2]
gi|417877392|ref|ZP_12522106.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH3]
gi|417883514|ref|ZP_12527751.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH4]
gi|421203374|ref|ZP_15660514.1| ribonuclease HI [Acinetobacter baumannii AC12]
gi|421536201|ref|ZP_15982451.1| ribonuclease HI [Acinetobacter baumannii AC30]
gi|421622720|ref|ZP_16063618.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC074]
gi|421630852|ref|ZP_16071549.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC180]
gi|421643553|ref|ZP_16084047.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-235]
gi|421646141|ref|ZP_16086593.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-251]
gi|421656494|ref|ZP_16096800.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-72]
gi|421660486|ref|ZP_16100676.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-83]
gi|421666986|ref|ZP_16107068.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC087]
gi|421669661|ref|ZP_16109680.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC099]
gi|421686491|ref|ZP_16126243.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-143]
gi|421700078|ref|ZP_16139595.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-58]
gi|421702938|ref|ZP_16142409.1| hypothetical protein B825_06716 [Acinetobacter baumannii ZWS1122]
gi|421709193|ref|ZP_16148555.1| hypothetical protein B837_18845 [Acinetobacter baumannii ZWS1219]
gi|421790518|ref|ZP_16226723.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-2]
gi|421795919|ref|ZP_16231993.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-21]
gi|421801698|ref|ZP_16237655.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Canada BC1]
gi|424053146|ref|ZP_17790678.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Ab11111]
gi|424064515|ref|ZP_17802000.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Ab44444]
gi|425754873|ref|ZP_18872706.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-113]
gi|445400985|ref|ZP_21430286.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-57]
gi|445468926|ref|ZP_21450989.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC338]
gi|445483174|ref|ZP_21456377.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Naval-78]
gi|445486931|ref|ZP_21457552.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii AA-014]
gi|169149606|emb|CAM87496.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
,epsilon subunit, 3-5 exonucleolytic proofreading
function] [Acinetobacter baumannii AYE]
gi|183209008|gb|ACC56406.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii ACICU]
gi|213055257|gb|ACJ40159.1| DNA polymerase III ,epsilon subunit [Acinetobacter baumannii
AB0057]
gi|213985858|gb|ACJ56157.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
AB307-0294]
gi|322507294|gb|ADX02748.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
1656-2]
gi|323517313|gb|ADX91694.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
TCDC-AB0715]
gi|333364586|gb|EGK46600.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB210]
gi|342230912|gb|EGT95734.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH1]
gi|342233050|gb|EGT97804.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH2]
gi|342235720|gb|EGU00298.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH4]
gi|342235812|gb|EGU00376.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
ABNIH3]
gi|385879125|gb|AFI96220.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
MDR-TJ]
gi|395558245|gb|EJG24242.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC189]
gi|395567942|gb|EJG28616.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Naval-17]
gi|398327122|gb|EJN43260.1| ribonuclease HI [Acinetobacter baumannii AC12]
gi|400207279|gb|EJO38249.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Canada BC-5]
gi|400384536|gb|EJP43214.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC032]
gi|404568201|gb|EKA73306.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-143]
gi|404570460|gb|EKA75533.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-58]
gi|404670676|gb|EKB38562.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Ab11111]
gi|404673251|gb|EKB41050.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Ab44444]
gi|407188484|gb|EKE59730.1| hypothetical protein B837_18845 [Acinetobacter baumannii ZWS1219]
gi|407193314|gb|EKE64481.1| hypothetical protein B825_06716 [Acinetobacter baumannii ZWS1122]
gi|407900737|gb|AFU37568.1| DNA polymerase III subunit epsilon [Acinetobacter baumannii TYTH-1]
gi|408505180|gb|EKK06906.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-72]
gi|408508236|gb|EKK09922.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-235]
gi|408517528|gb|EKK19066.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-251]
gi|408694554|gb|EKL40124.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC074]
gi|408696625|gb|EKL42157.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC180]
gi|408704271|gb|EKL49642.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-83]
gi|409985868|gb|EKO42071.1| ribonuclease HI [Acinetobacter baumannii AC30]
gi|410386458|gb|EKP38929.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC087]
gi|410388046|gb|EKP40486.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC099]
gi|410400746|gb|EKP52913.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-21]
gi|410404955|gb|EKP57008.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Canada BC1]
gi|410406071|gb|EKP58096.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-2]
gi|425495816|gb|EKU61985.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-113]
gi|444768871|gb|ELW93076.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii
Naval-78]
gi|444769158|gb|ELW93355.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii AA-014]
gi|444774567|gb|ELW98644.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC338]
gi|444783112|gb|ELX06974.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii Naval-57]
Length = 459
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 410 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 459
>gi|389720653|ref|ZP_10187480.1| bifunctional protein dnaQ [Acinetobacter sp. HA]
gi|388609500|gb|EIM38665.1| bifunctional protein dnaQ [Acinetobacter sp. HA]
Length = 467
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 141/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 240 RQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINPKKPVGDS-VNVHGITD 298
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F +I +Y+ +EII HNA FD+ FLDME G+ ++ + +TDTL
Sbjct: 299 EFLQDKPLFEDISQVLFDYLKGAEIIAHNATFDMNFLDMEFKRAGFQTLSE-VCEVTDTL 357
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP-- 180
MA+ H G++NSLDAL RY I + RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 358 AMAKSRHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 417
Query: 181 KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N +KI ++P+ L + EL +H + + ++ C++ K
Sbjct: 418 HSEEQNASSGSVKIEIDLPVILPSDEELSEHENWVKQYEEKHGAPCLFAK 467
>gi|169633080|ref|YP_001706816.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter baumannii SDF]
gi|169151872|emb|CAP00707.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
,epsilon subunit, 3-5 exonucleolytic proofreading
function] [Acinetobacter baumannii]
Length = 459
Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 410 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 459
>gi|352101209|ref|ZP_08958632.1| DNA polymerase III subunit epsilon [Halomonas sp. HAL1]
gi|350600693|gb|EHA16754.1| DNA polymerase III subunit epsilon [Halomonas sp. HAL1]
Length = 245
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/182 (47%), Positives = 119/182 (65%), Gaps = 6/182 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG++ DGHR++EIG +E+ NR+ TG H YINP R + +A+HG+
Sbjct: 2 RQVILDTETTGIDPKDGHRLVEIGAIEMVNRRFTGRTYHQYINPERHIDAEVVAVHGIDD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYI------Y 116
+ N+ F++I D F ++ +E++IHNA FDVGF+D EL +L +
Sbjct: 62 ARVANEPVFAKIADEFWAFIEGAELVIHNAPFDVGFIDHELGMLNQQRKAPALGPVRDHC 121
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ DTL MAR +H G+RNSLDALC RY+I HR LHG LLD+E+LAEVYLAMT GQ+ L
Sbjct: 122 AVLDTLTMARAMHPGQRNSLDALCKRYDIDNGHRVLHGALLDSEILAEVYLAMTGGQTAL 181
Query: 177 NF 178
Sbjct: 182 TL 183
>gi|239503330|ref|ZP_04662640.1| DNA polymerase III, epsilon subunit [Acinetobacter baumannii AB900]
gi|421677691|ref|ZP_16117582.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC111]
gi|410393027|gb|EKP45382.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC111]
Length = 459
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK ++ +P+ + EL H + + +K C++ K
Sbjct: 410 QSESDQQKTTKARVQIELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 459
>gi|50084331|ref|YP_045841.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter sp. ADP1]
gi|49530307|emb|CAG68019.1| bifunctional protein [Includes: ribonuclease HI; DNA polymerase III
,epsilon subunit, 3-5 exonucleolytic proofreading
function] [Acinetobacter sp. ADP1]
Length = 450
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 223 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VDVHGITD 281
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI + Y+ +EII HNA+FD+ FLDME G ++ + +TDTL
Sbjct: 282 EFLLDKPKYAEIAEPLFEYLKGAEIIAHNASFDMNFLDMEFKRAGLPTLSE-VCEVTDTL 340
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 341 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 400
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N + +I ++P+ ++NEL +HN + + + C++ K
Sbjct: 401 QREQNQRKGQRARIEADLPVIRPSANELEKHNEWVKSYQEKNGEPCLFAK 450
>gi|118594819|ref|ZP_01552166.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
subunit [Methylophilales bacterium HTCC2181]
gi|118440597|gb|EAV47224.1| DNA polymerase III, epsilon subunit:DNA polymerase 3, epsilon
subunit [Methylophilales bacterium HTCC2181]
Length = 222
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 120/179 (67%), Gaps = 2/179 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTGL+ GHR+IEI +E NRQ T N H+Y+NP R+ + +A +HG+T
Sbjct: 2 RQIFLDTETTGLDPNQGHRVIEIAAIEFNNRQATSNRFHFYVNPQREIDAAAQEVHGITL 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K F +I +F+ +++ SE++IHNA FDVGFL+MEL +G Y I D+L
Sbjct: 62 DFLNDKPLFVDIAADFIAFINGSELVIHNAPFDVGFLNMELGKIGMEKLESYCDGIMDSL 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS--NLNFK 179
A++I G+RNSLDALC +++ R+LHG LLDA+LL EVY+ MTRGQ +NF+
Sbjct: 122 KFAKEIRPGQRNSLDALCRAFDVDNSTRSLHGALLDAQLLGEVYIQMTRGQEAFTINFE 180
>gi|421674461|ref|ZP_16114392.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC065]
gi|421692975|ref|ZP_16132624.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-116]
gi|404559238|gb|EKA64503.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii IS-116]
gi|410384310|gb|EKP36822.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC065]
Length = 459
Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 93/232 (40%), Positives = 143/232 (61%), Gaps = 8/232 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VQVHGITD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 EFLVDKPKYAEIADTLFEYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---- 178
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 179 KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ +I+ + +++I +P+ + EL H + + +K C++ K
Sbjct: 410 QSEIDQQKTTKARVQI--ELPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 459
>gi|384226055|ref|YP_005617218.1| DNA polymerase III subunit epsilon [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
gi|311086562|gb|ADP66643.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. TLW03
(Acyrthosiphon pisum)]
Length = 237
Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 130/203 (64%), Gaps = 7/203 (3%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG+N HRIIEIG VEI +R TGNN H YI PGR E AL +H
Sbjct: 5 RTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQPGRSIESGALKVH 64
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T KFL +K F +I D+FLNY+ NS ++IHNA+FDVGF++ EL +L I
Sbjct: 65 GITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFCSI 124
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL MARK+ GK+N+LDALC RY I+K HR LH ++D+ LL ++YL MT GQ +L
Sbjct: 125 IDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQDSLFS 184
Query: 179 KPKINNSNNIETKIKIPNNIPIK 201
IN N + K+ NI +K
Sbjct: 185 DNTINYKENFK---KLKKNIQLK 204
>gi|219681615|ref|YP_002468001.1| DNA polymerase III subunit epsilon [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|219682172|ref|YP_002468556.1| DNA polymerase III subunit epsilon [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|257471303|ref|ZP_05635302.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. LSR1
(Acyrthosiphon pisum)]
gi|384226580|ref|YP_005618331.1| DNA polymerase III subunit epsilon [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
gi|219621905|gb|ACL30061.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Tuc7
(Acyrthosiphon pisum)]
gi|219624458|gb|ACL30613.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. 5A
(Acyrthosiphon pisum)]
gi|311087677|gb|ADP67756.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF98
(Acyrthosiphon pisum)]
Length = 237
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 102/203 (50%), Positives = 130/203 (64%), Gaps = 7/203 (3%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG+N HRIIEIG VEI +R TGNN H YI PGR E AL +H
Sbjct: 5 RTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQPGRSIESGALKVH 64
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T KFL +K F +I D+FLNY+ NS ++IHNA+FDVGF++ EL +L I
Sbjct: 65 GITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFCSI 124
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL MARK+ GK+N+LDALC RY I+K HR LH ++D+ LL ++YL MT GQ +L
Sbjct: 125 IDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQDSLFS 184
Query: 179 KPKINNSNNIETKIKIPNNIPIK 201
IN N + K+ NI +K
Sbjct: 185 DNTINYKENFK---KLKKNIQLK 204
>gi|91974903|ref|YP_567562.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
BisB5]
gi|91681359|gb|ABE37661.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
BisB5]
Length = 231
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 87/165 (52%), Positives = 114/165 (69%), Gaps = 2/165 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H YINP RD A A+HGL+
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQAFHRYINPERDMPAEAFAVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+++VD FL+++ ++ ++IHNA+FD GFL+ EL+ L + + R+ DTL
Sbjct: 62 EFLADKPLFAQVVDEFLDFIGDAPLVIHNASFDAGFLNAELARLSRAAIPR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYL 167
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYI 164
>gi|340362671|ref|ZP_08685043.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria macacae
ATCC 33926]
gi|339887193|gb|EGQ76779.1| DNA-directed DNA polymerase III epsilon subunit [Neisseria macacae
ATCC 33926]
Length = 256
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 141/234 (60%), Gaps = 10/234 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NNLH YI+P RD + A +HGLT
Sbjct: 19 RQIILDTETTGLYAEGGDRLVEFAGLEMINRQMTDNNLHLYIHPERDMPEEAAKVHGLTI 78
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ ++E+IIHNA FDVGFL+ME +G + + +TD
Sbjct: 79 EVLEEKNAPPFAEVGRQIADFIRDAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCTVTD 138
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR++ G++ SLDALC+R ++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 139 TLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQFDLMGGE 198
Query: 181 KINNSNNIETKI----KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ I K P ++ + AN+ EL H L + + C+W+K
Sbjct: 199 EKEEDEEVKPVIVAETKRPAHLKVIKANAEELAAHEQYLDGLGEA----CLWRK 248
>gi|421465580|ref|ZP_15914267.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
WC-A-157]
gi|400203847|gb|EJO34832.1| DNA polymerase III, epsilon subunit [Acinetobacter radioresistens
WC-A-157]
Length = 329
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 95/219 (43%), Positives = 141/219 (64%), Gaps = 14/219 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + IHG+T
Sbjct: 102 RQLILDTETTGFYFQDGDRIIEVGAIEMVNRKLTGSSIHIYINPEKPVGDS-VDIHGITD 160
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K ++ EI + NY+ +EII HNA+FD+ FLDME G+ ++ + +TDTL
Sbjct: 161 EFLQDKPRYVEIAEVLFNYLKGAEIIAHNASFDMNFLDMEFKRAGFPALSE-VCEVTDTL 219
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---- 178
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 220 ALAKSKHPGQKNSLDALVRRYEIPVRDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 279
Query: 179 KPKINNSN------NIETKIKIPNNIPIKLANSNELVQH 211
+ +I+ S N++ + +P+ P +LA E VQH
Sbjct: 280 QSEISQSQASRQVINVDLPVIVPS--PEELAAHEEWVQH 316
>gi|350532139|ref|ZP_08911080.1| DNA polymerase III subunit epsilon [Vibrio rotiferianus DAT722]
Length = 239
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 90/182 (49%), Positives = 125/182 (68%), Gaps = 6/182 (3%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N+ G HRIIEIG VEI NR++TG + H Y+ P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNLEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQPDAIGV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K ++ + FL+++ +E++ HNA FD GF+D E +L + T
Sbjct: 71 HGITDEFLVDKPDYANVHQEFLDFIKGAELVAHNAPFDTGFMDYEFEMLDPTIGKTDDFC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKKIFPGKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NF 178
F
Sbjct: 191 EF 192
>gi|262372107|ref|ZP_06065386.1| ribonuclease HI [Acinetobacter junii SH205]
gi|262312132|gb|EEY93217.1| ribonuclease HI [Acinetobacter junii SH205]
Length = 448
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 139/230 (60%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG D RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 221 RQLILDTETTGFYYQDNDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VDVHGITD 279
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D ++ +EII HNA FD+ FLDME G ++ + +TDTL
Sbjct: 280 EFLADKPKYAEIADVLFEFLKGAEIIAHNATFDMNFLDMEFKRAGLPALSE-VCEVTDTL 338
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP-- 180
+A+ H G++NSLDAL RY I RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 339 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDMDALS 398
Query: 181 KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N T+ ++ ++PI +EL QH + + ++ C + K
Sbjct: 399 QTEQQQNKTTRQRVQIDLPIIYPTDDELQQHETWVKQFEEKHGKPCFFAK 448
>gi|411001031|gb|AFV98762.1| DNA polymerase III epsilon subunit [Candidatus Snodgrassella sp.
T3_2_35043]
Length = 246
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 137/235 (58%), Gaps = 7/235 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL +G R+IE VE+ +R++TGNNLH YINP RD A+A+HG+T
Sbjct: 2 RQIILDTETTGLYANNGDRLIEFAGVEMVDRRLTGNNLHLYINPERDIPDEAVAVHGITL 61
Query: 63 KFLK--NKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L+ N F+ + +Y+ +E+IIHNA FD GFLDME LG D
Sbjct: 62 EKLQEMNAPVFAGVAQQIADYLHGAELIIHNAVFDEGFLDMEFERLGMPKIKTITSGTVD 121
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN--- 177
TL MAR + G++NSLDALC R + + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 122 TLKMARDKYPGQKNSLDALCTRLEVDRSKRVLHGALIDCELLGEVYLAMTRSQFSLVDEL 181
Query: 178 FKPKINNSNNI-ETKIKIP-NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N I ++K +I + + ++ EL +H L +DK CIW+K
Sbjct: 182 MATAAASENQIADSKYQIKHTGLTVVEPSAEELAEHEAYLQALDKIVGEPCIWRK 236
>gi|414562607|ref|YP_005617798.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
gi|311087143|gb|ADP67223.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. JF99
(Acyrthosiphon pisum)]
Length = 237
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 101/203 (49%), Positives = 130/203 (64%), Gaps = 7/203 (3%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG+N HRIIEIG VEI +R TGNN H YI PGR E AL +H
Sbjct: 5 RTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQPGRSIESGALKVH 64
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T KFL +K F +I D+FLNY+ NS ++IHNA+FD+GF++ EL +L I
Sbjct: 65 GITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDIGFINQELEILNKKIKINTFCSI 124
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL MARK+ GK+N+LDALC RY I+K HR LH ++D+ LL ++YL MT GQ +L
Sbjct: 125 IDTLKMARKLFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQDSLFS 184
Query: 179 KPKINNSNNIETKIKIPNNIPIK 201
IN N + K+ NI +K
Sbjct: 185 DNTINYKENFK---KLKKNIQLK 204
>gi|349609687|ref|ZP_08889064.1| DNA polymerase III, epsilon subunit [Neisseria sp. GT4A_CT1]
gi|348611255|gb|EGY60916.1| DNA polymerase III, epsilon subunit [Neisseria sp. GT4A_CT1]
Length = 255
Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 141/233 (60%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NR++T NNLH Y++P RD + A +HGLT
Sbjct: 19 RQIILDTETTGLYAEGGDRLVEFAGLEMINRKMTDNNLHLYVHPERDMPEEAAKVHGLTI 78
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ ++E+IIHNA FDVGFL+ME +G + + +TD
Sbjct: 79 EVLEEKNAPPFAEVGRQIADFIRDAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCTVTD 138
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP 180
TL MAR++ G++ SLDALC+R ++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 139 TLAMAREMFPGQKASLDALCNRLSVDRSKRVLHGALIDCELLGEVYLAMTRQQFDLMGGE 198
Query: 181 KINNSN---NIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K + I + K P ++ + AN+ EL H L + + C+W+K
Sbjct: 199 KEEDEEVKPVIIAETKRPAHLKVIKANAEELAAHEQYLDGLGEA----CLWRK 247
>gi|319638369|ref|ZP_07993131.1| DNA polymerase subunit III [Neisseria mucosa C102]
gi|317400118|gb|EFV80777.1| DNA polymerase subunit III [Neisseria mucosa C102]
Length = 245
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/240 (40%), Positives = 145/240 (60%), Gaps = 21/240 (8%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
R I+LD ETTGL +G R++E +E+ NRQ+T +NLH Y++P RD + A +HGLT
Sbjct: 3 QRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPERDMPEEAAKVHGLT 62
Query: 62 TKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
+ L KN F+++ +++ +E+IIHNA FDVGFL+ME +G + + ++T
Sbjct: 63 IEVLEAKNAPPFAQVGKQIADFIRGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCKVT 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--- 176
DTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQFDLMGG 182
Query: 177 ------NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
KP I +++K+ IK A+++EL H L + + C+W+K
Sbjct: 183 EAEEEGEVKPTIIAETKRTSQLKV-----IK-ADADELAAHEKYLDDLGEA----CVWRK 232
>gi|39933378|ref|NP_945654.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
CGA009]
gi|39653003|emb|CAE25745.1| putative DNA polymerase III epsilon chain [Rhodopseudomonas
palustris CGA009]
Length = 232
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 141/231 (61%), Gaps = 11/231 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H Y+NP RD A A+HGL++
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPERDMPAEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ + D FL ++ ++ ++IHNA+FD+GF++ ELS L + + R+ DTL
Sbjct: 62 EFLADKPLFAHVADEFLEFIGDAPLVIHNASFDIGFINAELSRLSRAPVPR--DRLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL---NF 178
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L +
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILADV 179
Query: 179 KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ + + + + P +P +L +++ L H ++ + + + IW
Sbjct: 180 PVEVAGAASESRRRQRPAPLPNRLTDAD-LEAHRTFIATMGE----KAIWP 225
>gi|90421821|ref|YP_530191.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
BisB18]
gi|90103835|gb|ABD85872.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
BisB18]
Length = 231
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/230 (41%), Positives = 134/230 (58%), Gaps = 11/230 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H YINP RD + A A+HGL+
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTFHRYINPERDMPQEAFAVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL K F+E+VD FL +++ + ++IHNA+FD+GF++ EL + + R+ DTL
Sbjct: 62 EFLSTKPLFAEVVDEFLEFIAEAPLVIHNASFDIGFINAELGKIARPPIPR--DRLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL---NF 178
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILAEA 179
Query: 179 KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
P +N + + + ++ +++ + + + DK IW
Sbjct: 180 APSRSNRPGDAPRRQRETPLAARVTDADRIAHREFVATLGDKP-----IW 224
>gi|118602424|ref|YP_903639.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
gi|118567363|gb|ABL02168.1| DNA polymerase III, epsilon subunit [Candidatus Ruthia magnifica
str. Cm (Calyptogena magnifica)]
Length = 222
Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 109/223 (48%), Positives = 139/223 (62%), Gaps = 6/223 (2%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNN-LHYYINPGRDSEKSALAIHG 59
M R IVLD ETTG+ +GHRIIEIGC EI +RQIT NN H YI P R+ S + IHG
Sbjct: 1 MERLIVLDTETTGIEPSEGHRIIEIGCTEIVDRQITENNEYHEYIQPSRNVGDS-VRIHG 59
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
+T KFL NK KF IV FL Y+ + +IIHNA FD+GFL+ EL L+G + I
Sbjct: 60 ITDKFLTNKPKFKAIVKTFLTYIEGATLIIHNAPFDLGFLNHELKLIGIDERIEDKCNII 119
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-NF 178
D+L ++++ G ++LDALC R+ I+ RT+HG LLDA++LA+VYLAMT GQS L N
Sbjct: 120 DSLELSKQQRPGTLHNLDALCRRFEINSSARTVHGALLDAKILAQVYLAMTGGQSTLFNN 179
Query: 179 KPKIN---NSNNIETKIKIPNNIPIKLANSNELVQHNMILSKI 218
+ IN N+NNI + I + AN EL H KI
Sbjct: 180 EQTINEQANTNNIIRVERAIGKIKVVYANKQELAAHASYFEKI 222
>gi|294649872|ref|ZP_06727272.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter haemolyticus ATCC 19194]
gi|292824246|gb|EFF83049.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter haemolyticus ATCC 19194]
Length = 452
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 145/230 (63%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VDVHGITD 283
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 284 EFLQDKPKYAEIADALFAYLKGAEIIAHNATFDMNFLDMEFKRVGLPLLSE-VCEVTDTL 342
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP-- 180
+A+ H G++NSLDAL RY I RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 343 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDIDALS 402
Query: 181 KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + N T+ ++ ++ + L + +EL +H + + ++ C++ K
Sbjct: 403 QHEQNQNKTTRQRVQIDLAVILPSEHELNEHETWVKQFEEKHGEPCLFAK 452
>gi|154251704|ref|YP_001412528.1| DNA polymerase III subunit epsilon [Parvibaculum lavamentivorans
DS-1]
gi|154155654|gb|ABS62871.1| DNA polymerase III, epsilon subunit [Parvibaculum lavamentivorans
DS-1]
Length = 228
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 96/229 (41%), Positives = 137/229 (59%), Gaps = 11/229 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ DGHR++EIGC+E+ N +TG H YI+P RD + A IHGL++
Sbjct: 2 REIVLDTETTGISPNDGHRLVEIGCLELFNHVVTGKYFHAYIDPERDMPEGAFRIHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL+ K KF+E+ D+FL ++ ++IHNAAFD+GF++ EL +G + R TDTL
Sbjct: 62 DFLRGKPKFAEVADDFLAFIGEDPLVIHNAAFDMGFINAELKRIGRPALP--VSRATDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
+AR+ G +NSLDALC R+ + RT HG LLD+ELLAEVYL + G Q L +
Sbjct: 120 DIARRKFPGAQNSLDALCRRFGVDNSGRTKHGALLDSELLAEVYLELMGGRQPGLVLQAD 179
Query: 182 INNSNNIETKIKIPNNI--PIKLANSNELVQHNMILSKIDKHSNGRCIW 228
E + P +I P +L + E H+ ++ + G +W
Sbjct: 180 YAGMKG-ERVTRAPRDIALPPRLTEA-EKAAHDAFVATL----GGEPLW 222
>gi|316931718|ref|YP_004106700.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
DX-1]
gi|315599432|gb|ADU41967.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
DX-1]
Length = 232
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 140/231 (60%), Gaps = 11/231 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H Y+NP RD A A+HGL+
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHRYLNPERDMPAEAFAVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+++ D FL ++ + ++IHNA+FD+GF++ ELS L + + R+ DTL
Sbjct: 62 EFLADKPLFAQVADEFLEFIGDDPLVIHNASFDIGFINAELSRLSRAPVPR--DRLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL---NF 178
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L +
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILADV 179
Query: 179 KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ + + + + P +P +L +++ L H ++ + + + IW
Sbjct: 180 PAEVVGAASENRRRQRPAPLPNRLTDAD-LEAHRAFIATMGE----KAIWP 225
>gi|261380159|ref|ZP_05984732.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
gi|284796997|gb|EFC52344.1| DNA polymerase III, epsilon subunit [Neisseria subflava NJ9703]
Length = 245
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 142/234 (60%), Gaps = 9/234 (3%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
R I+LD ETTGL +G R++E +E+ NRQ+T +NLH Y++P RD + A +HGLT
Sbjct: 3 QRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPERDMPEEAAKVHGLT 62
Query: 62 TKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
+ L KN F+++ +++ +E+IIHNA FDVGFL+ME +G + + ++T
Sbjct: 63 IEVLEAKNAPPFAQVGKQIADFIRGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCKVT 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQFDLMGG 182
Query: 180 PKINNSNNIETKI---KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+T I K + + + AN++EL H L + + C+W+K
Sbjct: 183 EAEEEGEVKQTVIAETKRTSQLKVIKANADELAAHEKYLDDLGEA----CVWRK 232
>gi|241758776|ref|ZP_04756889.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
gi|241320984|gb|EER57197.1| DNA polymerase III, epsilon subunit [Neisseria flavescens SK114]
Length = 245
Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 142/234 (60%), Gaps = 9/234 (3%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
R I+LD ETTGL +G R++E +E+ NRQ+T +NLH Y++P RD + A +HGLT
Sbjct: 3 QRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPERDMPEEAAKVHGLT 62
Query: 62 TKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
+ L KN F+++ +++ +E+IIHNA FDVGFL+ME +G + + ++T
Sbjct: 63 IEVLEAKNAPPFAQVGKQIADFIRGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCKVT 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQFDLMGG 182
Query: 180 PKINNSNNIETKI---KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+T I K + + + AN++EL H L + + C+W+K
Sbjct: 183 EAEEEGEVKQTVIAETKRTSQLKVIKANADELAAHEKYLDDLGEA----CVWRK 232
>gi|375266401|ref|YP_005023844.1| DNA polymerase III subunit epsilon [Vibrio sp. EJY3]
gi|369841721|gb|AEX22865.1| DNA polymerase III subunit epsilon [Vibrio sp. EJY3]
Length = 240
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/234 (41%), Positives = 145/234 (61%), Gaps = 14/234 (5%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG+N G HRIIEIG VEI NR++TG + H Y+ P R+ + A+ +
Sbjct: 11 RIVVLDTETTGMNQEGGPHYMGHRIIEIGAVEIINRKLTGRHFHVYLKPDREIQAEAVGV 70
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIY 116
HG+T +FL +K +++ + F++++ +E++ HNA FD GF+D E +L + T
Sbjct: 71 HGITDEFLVDKPEYASVHQEFIDFIKGAELVAHNAPFDTGFMDYEFEMLDPNIGKTDDFC 130
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++TDTL MA+KI GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 131 KVTDTLAMAKKIFPGKRNNLDILCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSL 190
Query: 177 NFKPKINNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIW 228
F +E+ ++ +K+ A+++E+ H L ++ IW
Sbjct: 191 EFNAN-KQEGGVESVRRVEGRKALKVLRASADEIDAHQKRLELVND-----SIW 238
>gi|225075242|ref|ZP_03718441.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
NRL30031/H210]
gi|224953417|gb|EEG34626.1| hypothetical protein NEIFLAOT_00242 [Neisseria flavescens
NRL30031/H210]
Length = 245
Score = 185 bits (469), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/234 (40%), Positives = 142/234 (60%), Gaps = 9/234 (3%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
R I+LD ETTGL +G R++E +E+ NRQ+T +NLH Y++P RD + A +HGLT
Sbjct: 3 QRQIILDTETTGLYPENGDRLVEFAGLEMINRQMTDSNLHLYVHPERDMPEEAAKVHGLT 62
Query: 62 TKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
+ L KN F+++ +++ +E+IIHNA FDVGFL+ME +G + + ++T
Sbjct: 63 IEVLEAKNAPPFAQVGKQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPSIEELGCKVT 122
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 123 DTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQFDLMGG 182
Query: 180 PKINNSNNIETKI---KIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+T I K + + + AN++EL H L + + C+W+K
Sbjct: 183 EAEEEGEVKQTVIAETKRTSQLKVVKANADELAAHEKYLDDLGEA----CVWRK 232
>gi|375133954|ref|YP_004994604.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2]
gi|325121399|gb|ADY80922.1| bifunctional protein dnaQ [Acinetobacter calcoaceticus PHEA-2]
Length = 459
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 142/233 (60%), Gaps = 10/233 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGR---DSEKSALAIHG 59
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + DSE IHG
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSEN----IHG 287
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
++ FLK+K +++I D +Y+ +EII HNA FD+ FLDME +G ++ + +T
Sbjct: 288 ISDDFLKDKPLYADIADTLFDYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVT 346
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL +A+ H G++NSLDAL RY I RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 347 DTLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDID 406
Query: 180 P--KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ NS + ++ ++P+ + EL H + + ++ C++ K
Sbjct: 407 ALSQSENSQQTTNRSRVQIDLPVIYPSDEELNTHETWVKEYEEKHGEPCLFAK 459
>gi|406040692|ref|ZP_11048047.1| bifunctional protein dnaQ [Acinetobacter ursingii DSM 16037 = CIP
107286]
Length = 492
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 141/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + +S IHG++
Sbjct: 265 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGESE-NIHGISD 323
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FLK+K K++EI D +Y+ +EII HNA FD+ FLD E G ++ + +TDTL
Sbjct: 324 DFLKDKPKYAEIADVLFDYLKGAEIIAHNATFDMNFLDTEFKRAGLVALSE-VCAVTDTL 382
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK--P 180
+A+ H G++NSLDAL RY+I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 383 ALAKSKHPGQKNSLDALVRRYDIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDVLS 442
Query: 181 KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N ++ ++ ++P+ L EL +H + + ++ C + K
Sbjct: 443 QHENHGQQNSRQRVQIDLPVILPEPEELARHETWVKQFEEKQGKPCFFAK 492
>gi|307252915|ref|ZP_07534803.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
gi|306859553|gb|EFM91578.1| hypothetical protein appser6_14260 [Actinobacillus pleuropneumoniae
serovar 6 str. Femo]
Length = 239
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 97/221 (43%), Positives = 133/221 (60%), Gaps = 10/221 (4%)
Query: 19 GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNF 78
GH IIEIG VE+ NR++TG H YI P R+ E+ A+ +HG+T +FL++K F+E+ D F
Sbjct: 10 GHNIIEIGAVEVINRRLTGRTFHVYIKPPREVEEEAIKVHGITNEFLQDKPVFAEVADEF 69
Query: 79 LNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYRITDTLLMARKIHTGKRNSLD 137
+ ++ +E+IIHNA FDV F+D E S L T + +TD+L +ARK++ GKRN+LD
Sbjct: 70 IEFIKGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRNNLD 129
Query: 138 ALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNLNFKPKINNSNNIE------- 189
ALCDR I R LHG LLDAE+LA+V+L MT GQ + L + N+
Sbjct: 130 ALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALLGEEDATATHENVADLGLGTI 189
Query: 190 TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
TK + I + L+ E H L IDK S G CIW +
Sbjct: 190 TKFETSGLIVLSLSE-EEQTAHEEYLKLIDKKSKGNCIWMR 229
>gi|313668102|ref|YP_004048386.1| DNA polymerase III subunit epsilon [Neisseria lactamica 020-06]
gi|313005564|emb|CBN87000.1| DNA polymerase III, epsilon chain [Neisseria lactamica 020-06]
Length = 244
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 138/233 (59%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 QVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---N 177
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L +
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGED 183
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K + + ++K + + A+ EL H L + + CIW+K
Sbjct: 184 EKEEPAAQPAVSAEMKRSAKLKVVKADEAELAAHEKYLDGLGES----CIWRK 232
>gi|261400727|ref|ZP_05986852.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
23970]
gi|269209492|gb|EEZ75947.1| DNA polymerase III, epsilon subunit [Neisseria lactamica ATCC
23970]
Length = 244
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 138/233 (59%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAAKVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 EVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---N 177
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L +
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGED 183
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K + + ++K + + A+ EL H L + + CIW+K
Sbjct: 184 EKEEPAAQPAVSVEMKRSAKLKVVKADETELAAHEKYLDGLGES----CIWRK 232
>gi|92115747|ref|YP_575476.1| DNA polymerase III subunit epsilon [Nitrobacter hamburgensis X14]
gi|91798641|gb|ABE61016.1| DNA polymerase III, epsilon subunit [Nitrobacter hamburgensis X14]
Length = 239
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 93/210 (44%), Positives = 124/210 (59%), Gaps = 26/210 (12%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLDIETTGL+ + G R++EIGCVEI NR TG H YINP RD + A A+HGL++
Sbjct: 2 REIVLDIETTGLDPLRGDRVVEIGCVEIFNRMPTGQTFHRYINPERDMPQEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL K F+ IVD+FL ++ ++ ++IHNA+FD+ F++ EL L + R+ DTL
Sbjct: 62 EFLAEKPLFTHIVDDFLEFIGDAPLVIHNASFDISFINAELDRLKMRTIGR--DRLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVY---------------- 166
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQPQLILAET 179
Query: 167 --------LAMTRGQSNLNFKPKINNSNNI 188
L M R Q + P++ +++ I
Sbjct: 180 ASRRTGGTLDMPRRQRTVPLAPRVTDADRI 209
>gi|192288734|ref|YP_001989339.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
TIE-1]
gi|192282483|gb|ACE98863.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
TIE-1]
Length = 232
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 140/231 (60%), Gaps = 11/231 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H Y+NP RD A A+HGL++
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGRTYHQYLNPERDMPAEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ + D FL ++ ++ ++IHNA+FD+GF++ ELS L + + R+ DTL
Sbjct: 62 EFLADKPLFAHVADEFLEFIGDAPLVIHNASFDIGFINAELSRLSRAPVPR--DRLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL---NF 178
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L +
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILADV 179
Query: 179 KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
++ + + + + P +P +L ++ L H ++ + + + IW
Sbjct: 180 PAEVVGAASENRRRQRPAPLPNRLTEAD-LEAHRAFIATMGE----KAIWP 225
>gi|261364618|ref|ZP_05977501.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
gi|288567207|gb|EFC88767.1| DNA polymerase III, epsilon subunit [Neisseria mucosa ATCC 25996]
Length = 239
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 141/241 (58%), Gaps = 20/241 (8%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R I+LD ETTGL +G R++E +E+ NRQ+TG LH Y++P RD + A +HGL
Sbjct: 1 MRRQIILDTETTGLYAENGDRLVEFAGLEMVNRQMTGRFLHLYVHPQRDMPEEAARVHGL 60
Query: 61 TTKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
T L KN F+++ ++ +E+IIHNA FDVGFL+ME +G + + I
Sbjct: 61 TIDVLEEKNAPPFAKVGQEISEFIRGAELIIHNAKFDVGFLNMEFRRMGLPSVEELGCEI 120
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR++ G++ SLDALC+R +I + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 121 TDTLAMAREMFPGQKASLDALCNRLSIDRSKRVLHGALIDCELLGEVYLAMTRQQFDL-- 178
Query: 179 KPKINNSNNIETKIKIP---------NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
+ + ETK P +++ + ANS EL +H L + + CIW+
Sbjct: 179 ---MGGESEEETKEDKPVIIAETKRSSSLKVIKANSEELEEHEKYLDALGEP----CIWR 231
Query: 230 K 230
+
Sbjct: 232 Q 232
>gi|422110479|ref|ZP_16380476.1| unnamed protein product [Neisseria lactamica Y92-1009]
gi|309378712|emb|CBX22662.1| unnamed protein product [Neisseria lactamica Y92-1009]
Length = 244
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 138/233 (59%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 EVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---N 177
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L +
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGED 183
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
K + + ++K + + A+ EL H L + + CIW+K
Sbjct: 184 EKEEPAAQPAVSAEMKRSAKLKVVKADEAELAAHEKYLDGLGES----CIWRK 232
>gi|344200719|ref|YP_004785045.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrivorans
SS3]
gi|343776163|gb|AEM48719.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrivorans
SS3]
Length = 241
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 84/174 (48%), Positives = 124/174 (71%), Gaps = 3/174 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG++ GHR+IEIG VE+ +R++TG + Y+NP R S+ AL +HGLT
Sbjct: 4 RQVVLDTETTGIDWKQGHRVIEIGAVELIDRRVTGVHYQQYLNPQRSSDPEALRVHGLTA 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F+E+ D FL+++ ++E+IIHNA FD+GFL+ EL + + + + DTL
Sbjct: 64 EFLQDKPGFAEVADAFLDFLGDAELIIHNAPFDLGFLNHELQQVEKAPLRQA---VMDTL 120
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+ AR+ H G++N L++LC RY++ R LHG LLD E+LAEVYLAMT GQ ++
Sbjct: 121 VDARRRHPGQKNDLNSLCRRYSVDNSRRDLHGALLDCEILAEVYLAMTGGQVDM 174
>gi|445431482|ref|ZP_21438836.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC021]
gi|444759585|gb|ELW84051.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii OIFC021]
Length = 459
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 142/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + +S IHG++
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGESE-NIHGISD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FLK+K +++I D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 DFLKDKPVYADIADTLFEYLKGAEIIAHNATFDMNFLDMEFRRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK +I ++P+ + EL H + + +K C++ K
Sbjct: 410 QSESDQQKTTKARIQIDLPVIYPSDEELNIHETWVKEFEKKHGEPCLFAK 459
>gi|194098390|ref|YP_002001448.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
NCCP11945]
gi|254493581|ref|ZP_05106752.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
gi|268594640|ref|ZP_06128807.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
gi|268598788|ref|ZP_06132955.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
gi|268601147|ref|ZP_06135314.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
gi|268681945|ref|ZP_06148807.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
gi|268686413|ref|ZP_06153275.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
gi|291044028|ref|ZP_06569744.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
gi|293399220|ref|ZP_06643385.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
gi|385335542|ref|YP_005889489.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
TCDC-NG08107]
gi|193933680|gb|ACF29504.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
NCCP11945]
gi|226512621|gb|EEH61966.1| DNA polymerase subunit III [Neisseria gonorrhoeae 1291]
gi|268548029|gb|EEZ43447.1| DNA polymerase III [Neisseria gonorrhoeae 35/02]
gi|268582919|gb|EEZ47595.1| DNA polymerase subunit III [Neisseria gonorrhoeae MS11]
gi|268585278|gb|EEZ49954.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID18]
gi|268622229|gb|EEZ54629.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID332]
gi|268626697|gb|EEZ59097.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-93-1035]
gi|291012491|gb|EFE04480.1| DNA polymerase subunit III [Neisseria gonorrhoeae DGI2]
gi|291610634|gb|EFF39744.1| DNA polymerase III, epsilon subunit [Neisseria gonorrhoeae F62]
gi|317164085|gb|ADV07626.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
TCDC-NG08107]
Length = 244
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 140/241 (58%), Gaps = 21/241 (8%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGL
Sbjct: 2 MTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGL 61
Query: 61 TTKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
T + L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +
Sbjct: 62 TIQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTV 121
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 122 TDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMG 181
Query: 177 -------NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
KP + + K+K+ IK A+ EL H L + + CIW+
Sbjct: 182 ETEEEEPTAKPVASAEMKLGAKLKV-----IK-ADEAELAAHEEYLDGLGEA----CIWR 231
Query: 230 K 230
K
Sbjct: 232 K 232
>gi|198282704|ref|YP_002219025.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218665705|ref|YP_002424896.1| DNA polymerase III subunit epsilon [Acidithiobacillus ferrooxidans
ATCC 23270]
gi|198247225|gb|ACH82818.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
ATCC 53993]
gi|218517918|gb|ACK78504.1| DNA polymerase III, epsilon subunit [Acidithiobacillus ferrooxidans
ATCC 23270]
Length = 248
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 85/174 (48%), Positives = 121/174 (69%), Gaps = 3/174 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG++ GHR+IEIG VE+ +R++T Y+NP R S+ AL IHGLT
Sbjct: 4 RQVVLDTETTGIDWKQGHRVIEIGAVELIDRRVTEAYYQQYLNPQRSSDPEALRIHGLTD 63
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL+++ F+E+ D FL ++ ++E+IIHNA FD+GFL+ EL L G + + + DTL
Sbjct: 64 EFLQDQPGFAEVADAFLEFLGDAELIIHNAPFDLGFLNHELQLAGKAPLRQA---VMDTL 120
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
AR+ H G++N L++LC RY++ HR LHG LLD +LAEVYLAMT GQ ++
Sbjct: 121 ADARRRHPGQKNDLNSLCRRYSVENSHRELHGALLDTRILAEVYLAMTGGQVDM 174
>gi|359430545|ref|ZP_09221551.1| ribonuclease H [Acinetobacter sp. NBRC 100985]
gi|358234009|dbj|GAB03090.1| ribonuclease H [Acinetobacter sp. NBRC 100985]
Length = 451
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 141/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG D RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 224 RQLILDTETTGFYYQDSDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VDVHGITD 282
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K K++EI D Y+ +EII HNA FD+ FLDME +G + + +TDTL
Sbjct: 283 EFLVDKPKYAEIADTLFAYLKGAEIIAHNATFDMNFLDMEFKRVGLPLLSD-VCDVTDTL 341
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP-- 180
+A+ H G++NSLDAL RY I RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 342 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDMDALS 401
Query: 181 KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ N ++ +I ++P+ N++E+ QH + + ++ C + K
Sbjct: 402 ESEEGQNKTSRQRIEVDLPVIYPNNDEINQHETWVKQFEEKHGKPCFFAK 451
>gi|384214328|ref|YP_005605491.1| DNA polymerase III subunit epsilon [Bradyrhizobium japonicum USDA
6]
gi|354953224|dbj|BAL05903.1| DNA polymerase III epsilon chain [Bradyrhizobium japonicum USDA 6]
Length = 240
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 90/175 (51%), Positives = 116/175 (66%), Gaps = 3/175 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H YINP RD A A+HGL+
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEIFNRMPTGQTYHVYINPERDMPAEAFAVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL K F E+VD FL ++ ++ ++IHNA+FD+GF++ EL + + R+ DTL
Sbjct: 62 EFLSTKPLFHEVVDAFLEFIGDAPLVIHNASFDIGFINAELDKVKRVAIPR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL 176
L+AR+ H G N LD LC RY+I HRT HG LLDAELLAEVY+ + QS L
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYSIDNSHRTKHGALLDAELLAEVYVDLVGARQSQL 174
>gi|59801359|ref|YP_208071.1| DNA polymerase III subunit epsilon [Neisseria gonorrhoeae FA 1090]
gi|268597034|ref|ZP_06131201.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
gi|59718254|gb|AAW89659.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
FA 1090]
gi|268550822|gb|EEZ45841.1| DNA polymerase III [Neisseria gonorrhoeae FA19]
Length = 244
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 140/241 (58%), Gaps = 21/241 (8%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGL
Sbjct: 2 MTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGL 61
Query: 61 TTKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
T + L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +
Sbjct: 62 TIQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCTV 121
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 122 TDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMG 181
Query: 177 -------NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
KP + + K+K+ IK A+ EL H L + + CIW+
Sbjct: 182 ETEEEEPTAKPVASAEMKLGAKLKV-----IK-ADEAELAAHEEYLDGLGEA----CIWR 231
Query: 230 K 230
K
Sbjct: 232 K 232
>gi|260550748|ref|ZP_05824956.1| ribonuclease HI [Acinetobacter sp. RUH2624]
gi|424056342|ref|ZP_17793863.1| DNA polymerase III, epsilon subunit [Acinetobacter nosocomialis
Ab22222]
gi|425741702|ref|ZP_18859842.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-487]
gi|260406254|gb|EEW99738.1| ribonuclease HI [Acinetobacter sp. RUH2624]
gi|407441382|gb|EKF47888.1| DNA polymerase III, epsilon subunit [Acinetobacter nosocomialis
Ab22222]
gi|425491526|gb|EKU57808.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-487]
Length = 459
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 141/230 (61%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + +S IHG++
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGESE-NIHGISD 290
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FLK+K +++I D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 291 DFLKDKPVYADIADTLFEYLKGAEIIAHNATFDMNFLDMEFRRVGLPALSE-VCEVTDTL 349
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+A+ H G++NSLDAL RY I RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 350 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILSDVYLAMTGGQVSFDMDALS 409
Query: 183 NNSNNIE--TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ ++ + TK +I ++P+ + EL H + + +K C + K
Sbjct: 410 QSESDQQKTTKARIQIDLPVIYPSDEELNIHETWVKEFEKKHGEPCFFAK 459
>gi|293608835|ref|ZP_06691138.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
gi|427424441|ref|ZP_18914564.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-136]
gi|292829408|gb|EFF87770.1| hypothetical protein HMPREF0013_00973 [Acinetobacter sp. SH024]
gi|425698741|gb|EKU68374.1| ribonuclease HI/DNA polymerase III, epsilon subunit [Acinetobacter
baumannii WC-136]
Length = 459
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 142/233 (60%), Gaps = 10/233 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGR---DSEKSALAIHG 59
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + DSE IHG
Sbjct: 232 RQLILDTETTGFYFQDGDRIIEVGAIEMINRKLTGSSIHIYINPQKPVGDSEN----IHG 287
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
++ FLK+K +++I D +Y+ +EII HNA FD+ FLDME +G ++ + +T
Sbjct: 288 ISDDFLKDKPLYADIADTLFDYLKGAEIIAHNATFDMNFLDMEFKRVGLPALSE-VCEVT 346
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL +A+ H G++NSLDAL RY I RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 347 DTLALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDID 406
Query: 180 P--KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ NS + ++ ++P+ + EL H + + ++ C++ K
Sbjct: 407 ALSQSENSQQTTNRSRVQIDLPVIYPSDEELNIHETWVKEYEEKHGEPCLFAK 459
>gi|15616860|ref|NP_240073.1| DNA polymerase III subunit epsilon [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
gi|11132278|sp|P57337.1|DPO3E_BUCAI RecName: Full=DNA polymerase III subunit epsilon
gi|25299956|pir||G84958 DNA-directed DNA polymerase (EC 2.7.7.7) epsilon chain [imported] -
Buchnera sp. (strain APS)
gi|10038924|dbj|BAB12959.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. APS
(Acyrthosiphon pisum)]
Length = 237
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 130/203 (64%), Gaps = 7/203 (3%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG+N HRIIEIG VEI +R TGNN H YI PGR E AL +H
Sbjct: 5 RTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQPGRSIESGALKVH 64
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T KFL +K F +I D+FLNY+ NS ++IHNA+FDVGF++ EL +L I
Sbjct: 65 GITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFCSI 124
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL +AR++ GK+N+LDALC RY I+K HR LH ++D+ LL ++YL MT GQ +L
Sbjct: 125 IDTLKIARELFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQDSLFS 184
Query: 179 KPKINNSNNIETKIKIPNNIPIK 201
IN N + K+ NI +K
Sbjct: 185 DNTINYKENFK---KLKKNIQLK 204
>gi|357386348|ref|YP_004901072.1| DNA polymerase III epsilon subunit [Pelagibacterium halotolerans
B2]
gi|351594985|gb|AEQ53322.1| DNA polymerase III epsilon subunit [Pelagibacterium halotolerans
B2]
Length = 240
Score = 183 bits (465), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/233 (41%), Positives = 137/233 (58%), Gaps = 13/233 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ +G R++EIGCVE+ N TG + H YINP RD + A +HGL+
Sbjct: 5 REIVLDTETTGLSAANGDRLVEIGCVELINHVPTGRHYHVYINPERDMPEEAFRVHGLSE 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL++K KF+E+ F +++ + +IIHNA FD+GFL+ EL G T + DT+
Sbjct: 65 DFLRDKPKFAEVAQAFADFIGDDTLIIHNAPFDMGFLNAELEWTGRPRLTN---DVIDTV 121
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
++ARKIH G R SLDALC Y I RTLHG LLD+E+LAEVYL + G Q L +
Sbjct: 122 MLARKIHPGARVSLDALCKHYGIDNSRRTLHGALLDSEILAEVYLELIGGRQVALALSAE 181
Query: 182 ----INNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
I + + P +P +L + E + H ++++ + + +W K
Sbjct: 182 ADVSIRGAGTRPPARQRPTPLPARL-TAQEKLAHAGFIAQMGESA----VWLK 229
>gi|378823298|ref|ZP_09845956.1| DNA polymerase III, epsilon subunit [Sutterella parvirubra YIT
11816]
gi|378597874|gb|EHY31104.1| DNA polymerase III, epsilon subunit [Sutterella parvirubra YIT
11816]
Length = 245
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 100/232 (43%), Positives = 131/232 (56%), Gaps = 7/232 (3%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITG---NNLHYYINPGRDSEKSALAIH 58
R I LD ETTGL G RIIEIGCV + R +T + L YINP R+ A+ +H
Sbjct: 4 QRLITLDTETTGLEAQGGDRIIEIGCVALDGRLLTNRPEDRLQLYINPEREVPADAIEVH 63
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T +FL +K KF+EIVD FL +V+ +IIHNAAFD GFLD EL G + Y +
Sbjct: 64 GITNEFLADKPKFAEIVDQFLAFVNGGTLIIHNAAFDTGFLDAELERCGRGKISDYC-EV 122
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DT+ +A+++ G+ SL +LC Y I RT HG LLDA+LLAEVY ++TRGQ
Sbjct: 123 IDTIKLAKQLLPGRAVSLASLCRYYEIDDSARTYHGALLDAQLLAEVYQSLTRGQDTFEL 182
Query: 179 KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+N + I I A E+ +HN IL +K G IW+K
Sbjct: 183 ---LNVDADNLPPIPPFEAFVITKATDEEIAEHNRILDIAEKKCKGISIWRK 231
>gi|325267110|ref|ZP_08133779.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
denitrificans ATCC 33394]
gi|324981463|gb|EGC17106.1| DNA-directed DNA polymerase III epsilon subunit [Kingella
denitrificans ATCC 33394]
Length = 245
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 139/239 (58%), Gaps = 11/239 (4%)
Query: 2 HRHIVLDIETTGLN---IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG + R+IE +E+ NRQ T N+LH YI+P RD A A+H
Sbjct: 3 QRQIILDTETTGFEHSRADNPDRMIEFAGLEMVNRQFTQNDLHLYIHPERDIPAEATAVH 62
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T L +K F+++ +++ +E+IIHNA FDVGFL+ E + +G N + +
Sbjct: 63 GITLDDLADKPVFADVAQQIFDFLKGAELIIHNAKFDVGFLNAEFARVGLPNIDS-VCTV 121
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL MARK + G++NSLDALC R + + R LHG L+D ELL VYLAMTRGQ +L+
Sbjct: 122 VDTLEMARKRYPGQKNSLDALCTRLGVDRSRRVLHGALIDCELLGGVYLAMTRGQFSLDD 181
Query: 179 KPKINNS----NNIETKIKIP---NNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+N+ N + + P + ++ A+ E H L +DK + GRCI+++
Sbjct: 182 AFAADNAVSAGNAAKGALAAPLSAGKLKVQAASEEECAAHENYLDGLDKAAGGRCIYRQ 240
>gi|307248305|ref|ZP_07530330.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|307263945|ref|ZP_07545548.1| hypothetical protein appser13_13530 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
gi|306855175|gb|EFM87353.1| hypothetical protein appser2_12830 [Actinobacillus pleuropneumoniae
serovar 2 str. S1536]
gi|306870707|gb|EFN02448.1| hypothetical protein appser13_13530 [Actinobacillus
pleuropneumoniae serovar 13 str. N273]
Length = 239
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 96/221 (43%), Positives = 133/221 (60%), Gaps = 10/221 (4%)
Query: 19 GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNF 78
GH IIEIG VE+ NR++TG H YI P R+ ++ A+ +HG+T +FL++K F+E+ D F
Sbjct: 10 GHNIIEIGAVEVINRRLTGRTFHVYIKPPREVDEEAIKVHGITNEFLQDKPVFAEVADEF 69
Query: 79 LNYVSNSEIIIHNAAFDVGFLDMELSLL-GYSNFTKYIYRITDTLLMARKIHTGKRNSLD 137
+ ++ +E+IIHNA FDV F+D E S L T + +TD+L +ARK++ GKRN+LD
Sbjct: 70 IEFIKGAELIIHNAPFDVAFMDQEFSYLENPPPKTAEMCSVTDSLAVARKMYPGKRNNLD 129
Query: 138 ALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-SNLNFKPKINNSNNIE------- 189
ALCDR I R LHG LLDAE+LA+V+L MT GQ + L + N+
Sbjct: 130 ALCDRLGIDNSKRVLHGALLDAEILADVFLMMTGGQLALLGEEDATATHENVADLGLGTI 189
Query: 190 TKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
TK + I + L+ E H L IDK S G CIW +
Sbjct: 190 TKFETSGLIVLSLSE-EEQTAHEEYLKLIDKKSKGNCIWMR 229
>gi|226952576|ref|ZP_03823040.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter sp. ATCC 27244]
gi|226836656|gb|EEH69039.1| bifunctional ribonuclease HI/DNA polymerase III subunit epsilon
[Acinetobacter sp. ATCC 27244]
Length = 452
Score = 183 bits (464), Expect = 6e-44, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 144/230 (62%), Gaps = 4/230 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + S + +HG+T
Sbjct: 225 RQLILDTETTGFYYQDGDRIIEVGAIEMINRKLTGSSIHIYINPEKPVGDS-VDVHGITD 283
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K K++EI D Y+ +EII HNA FD+ FLDME +G ++ + +TDTL
Sbjct: 284 EFLQDKPKYAEIADALFAYLKGAEIIAHNATFDMNFLDMEFKRVGLPLLSE-VCEVTDTL 342
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKP-- 180
+A+ H G++NSLDAL RY I RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 343 ALAKNKHPGQKNSLDALVRRYEIPARDRTFHGALLDAEILADVYLAMTGGQVSFDIDALS 402
Query: 181 KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + N T+ ++ ++ + + +EL +H + + ++ C++ K
Sbjct: 403 QHEQNQNKTTRQRVQIDLAVIRPSEHELNEHETWVKQFEEKHGEPCLFAK 452
>gi|421556883|ref|ZP_16002793.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 80179]
gi|402336137|gb|EJU71399.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 80179]
Length = 244
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 140/241 (58%), Gaps = 21/241 (8%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+ R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGL
Sbjct: 2 IQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGL 61
Query: 61 TTKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
T + L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +
Sbjct: 62 TIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTV 121
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 122 TDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMG 181
Query: 177 -------NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
KP + + K+K+ IK A+ EL H L + + CIW+
Sbjct: 182 EAEEEEPAAKPVASAEMKLGAKLKV-----IK-ADEAELAAHGQYLDGLGEA----CIWR 231
Query: 230 K 230
K
Sbjct: 232 K 232
>gi|197335831|ref|YP_002156764.1| DNA polymerase III subunit epsilon [Vibrio fischeri MJ11]
gi|197317321|gb|ACH66768.1| DNA polymerase III, epsilon subunit [Vibrio fischeri MJ11]
Length = 223
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 102/223 (45%), Positives = 144/223 (64%), Gaps = 9/223 (4%)
Query: 12 TGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKF 71
+G + +GHRI+EIG VEI NR++TGN+ H YI P R + A+ +HG+T +FL +K ++
Sbjct: 4 SGGPVYEGHRIVEIGAVEIINRKLTGNHFHVYIKPDRLIDLEAIDVHGITDEFLYDKPEY 63
Query: 72 SEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-RITDTLLMARKIHT 130
+I D FL ++ +E++ HNA FDVGF+D E S L T Y +ITDTL MA+KI
Sbjct: 64 KDIHDEFLEFIKGAELVAHNAPFDVGFMDYEFSKLNKLIGTTDQYCKITDTLAMAKKIFP 123
Query: 131 GKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKINNSNNIET 190
GKRN+LD LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L+F N+S++ E
Sbjct: 124 GKRNNLDVLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLSFSSGDNSSDSDEE 183
Query: 191 KIKIPNN----IPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
IK N+ + + A ++EL H L + C+W+
Sbjct: 184 TIKRLNSGRKGLKVLRATADELEAHEKRLDIV----GDACLWR 222
>gi|240014290|ref|ZP_04721203.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
DGI18]
gi|240121853|ref|ZP_04734815.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
PID24-1]
gi|268603465|ref|ZP_06137632.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
gi|268684159|ref|ZP_06151021.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
gi|268587596|gb|EEZ52272.1| DNA polymerase subunit III [Neisseria gonorrhoeae PID1]
gi|268624443|gb|EEZ56843.1| DNA polymerase subunit III [Neisseria gonorrhoeae SK-92-679]
Length = 244
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 99/241 (41%), Positives = 140/241 (58%), Gaps = 21/241 (8%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGL
Sbjct: 2 MTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGL 61
Query: 61 TTKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
T + L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +
Sbjct: 62 TIQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCTV 121
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 122 TDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMG 181
Query: 177 -------NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
KP + + K+K+ IK A+ EL H L + + CIW+
Sbjct: 182 ETEEEETTAKPVASAEMKLGAKLKV-----IK-ADEAELAAHEEYLDGLGEA----CIWR 231
Query: 230 K 230
K
Sbjct: 232 K 232
>gi|375336961|ref|ZP_09778305.1| DNA polymerase III subunit epsilon [Succinivibrionaceae bacterium
WG-1]
Length = 264
Score = 182 bits (463), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 94/190 (49%), Positives = 130/190 (68%), Gaps = 7/190 (3%)
Query: 2 HRHIVLDIETTGLNIIDG----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R +VLD ETTG + DG HRIIEIGCVE+KNR +TG L Y+NP R ++ A +
Sbjct: 7 ERKVVLDTETTGKSD-DGTPGDHRIIEIGCVELKNRNLTGRKLQLYVNPERAVDEEAYNV 65
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR 117
H ++ +FL++K KF EI + F ++ +E+IIHNA FDVGF++ E L+G + + I
Sbjct: 66 HHISNEFLQDKPKFQEIFEEFYEFIKGAELIIHNAKFDVGFINHEFKLIGKNLKVENICT 125
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD++ +ARK G+R SLDALC + NI RT HG LLD+E+LAEVYLA+T GQ NLN
Sbjct: 126 VTDSIEIARKKFPGQRVSLDALCSKLNIDNSSRTSHGALLDSEILAEVYLALTGGQENLN 185
Query: 178 FKPKINNSNN 187
F +NN+++
Sbjct: 186 F--SVNNTSS 193
>gi|339320277|ref|YP_004679972.1| DNA polymerase III subunit epsilon [Candidatus Midichloria
mitochondrii IricVA]
gi|338226402|gb|AEI89286.1| DNA polymerase III, epsilon subunit [Candidatus Midichloria
mitochondrii IricVA]
Length = 225
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 100/231 (43%), Positives = 142/231 (61%), Gaps = 17/231 (7%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL + GHRIIEIGCVE+ N+ TG H Y+NP R + +A +HG++
Sbjct: 5 REIVLDTETTGLRVKHGHRIIEIGCVELVNKVRTGKTFHTYLNPQRKIDPTAYEVHGISD 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+ + +K FS++ + F+ ++ NS +IIHNA FD+ F++ EL+L G +T ++R DTL
Sbjct: 65 ELVADKPTFSKVAEQFMEFIGNSNLIIHNAVFDMQFINQELTLSG--RYTLPMHRAIDTL 122
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
LMARK G + SLDALC R+NIS R HG L+DAELLA VY+ M+ G Q +
Sbjct: 123 LMARKKFPGSQASLDALCRRFNISLHAREKHGALVDAELLALVYIEMSSGSQGQIRLDAS 182
Query: 182 INNSNNIETKIKIPNNIPIKL--ANSNELVQHNMILSKIDKHSNGRCIWKK 230
IN + N+ N P ++ A+++EL +H I+ I + IW K
Sbjct: 183 INRAINL-------RNYPYRIFEASADELRRHAYIMKLIKE-----PIWMK 221
>gi|365896113|ref|ZP_09434200.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Bradyrhizobium sp. STM 3843]
gi|365423122|emb|CCE06742.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Bradyrhizobium sp. STM 3843]
Length = 232
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 90/198 (45%), Positives = 124/198 (62%), Gaps = 8/198 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGC+EI NR TG H YINP RD A A+HGL++
Sbjct: 2 REIVLDTETTGLDALRGDRLVEIGCIEIFNRMPTGQTFHRYINPERDMPAEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL K F E+V+ FL ++ ++ ++IHNA+FD+GF++ EL + + R+ DTL
Sbjct: 62 EFLATKPLFHEVVEEFLTFIGDAPLVIHNASFDIGFINAELDRVSRVPIPR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQL----- 174
Query: 182 INNSNNIETKIKIPNNIP 199
I ++E ++ ++P
Sbjct: 175 ILTQESVEIRVGTSTDMP 192
>gi|421559600|ref|ZP_16005473.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 92045]
gi|402335399|gb|EJU70665.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 92045]
Length = 244
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 139/239 (58%), Gaps = 21/239 (8%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 QVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---- 176
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGEA 183
Query: 177 -----NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
KP + + K+K+ IK A+ EL H L + + CIW+K
Sbjct: 184 EEEEPAAKPVASAEMKLGAKLKV-----IK-ADEAELAAHGQYLDGLGEA----CIWRK 232
>gi|421542803|ref|ZP_15988908.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM255]
gi|402316600|gb|EJU52143.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM255]
Length = 244
Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 140/233 (60%), Gaps = 9/233 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 EVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL--NF 178
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGEV 183
Query: 179 KPKINNSNNIET-KIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ K + + + ++K+ + + A+ EL H L + + CIW+K
Sbjct: 184 EEKEPAAKPVASAEMKLGAKLKVIKADEAELAAHGQYLDGLGEA----CIWRK 232
>gi|374293371|ref|YP_005040406.1| DNA polymerase III subunit epsilon [Azospirillum lipoferum 4B]
gi|357425310|emb|CBS88197.1| DNA polymerase III, epsilon subunit [Azospirillum lipoferum 4B]
Length = 227
Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 88/193 (45%), Positives = 123/193 (63%), Gaps = 3/193 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG +GHR++EIGC+E+ N TG H Y+NP RD A A+HGL+T
Sbjct: 2 REIVLDTETTGFKPEEGHRLVEIGCIELVNHLATGERFHVYLNPERDMPPEAFAVHGLST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+++ +F+ ++ +S ++IHNAAFD+ FL+ EL + GY K R DTL
Sbjct: 62 EFLADKPLFNDVAADFVAFIGDSPLVIHNAAFDMHFLNWELKIAGYPVMPK--DRAIDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
LMAR+ G +LDALC R+ + +RTLHG LLDA+LLAEVYL + G Q+ L+F
Sbjct: 120 LMARQKFPGSPATLDALCKRFGVDNSNRTLHGALLDAQLLAEVYLELLGGRQTGLSFAGG 179
Query: 182 INNSNNIETKIKI 194
+ ++I
Sbjct: 180 PASKGGSAGPVRI 192
>gi|182680101|ref|YP_001834247.1| DNA polymerase III subunit epsilon [Beijerinckia indica subsp.
indica ATCC 9039]
gi|182635984|gb|ACB96758.1| DNA polymerase III, epsilon subunit [Beijerinckia indica subsp.
indica ATCC 9039]
Length = 236
Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 139/230 (60%), Gaps = 11/230 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ +GHRIIEIGC+EI + TG H YI+P RD + A+ +HG+T
Sbjct: 2 REIVLDTETTGLDPAEGHRIIEIGCIEILHTIPTGQIFHVYIDPQRDIPEDAVRVHGITA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL K F++I FL ++ +++++ HNAAFD+ FL+ EL LLG R+ DTL
Sbjct: 62 EFLAGKPVFADIASEFLAFIGDAKLVAHNAAFDMRFLNAELGLLGLEPIDS--ERVVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFK-- 179
+AR+ H G NSLDALC+RY I RT HG LLD+E+LA+VY + G Q+ L F+
Sbjct: 120 ALARRRHPGASNSLDALCNRYGIDNTRRTKHGALLDSEILADVYAELLGGRQAALTFETA 179
Query: 180 PKINNSNNIETKIKIPNNIPIKLA-NSNELVQHNMILSKIDKHSNGRCIW 228
+ N +T + +P++ A +S E H ++K+ + IW
Sbjct: 180 TALRQDNTHQTPFR-QRPVPLESALSSQERDAHRAFIAKL----GDKAIW 224
>gi|384227685|ref|YP_005619430.1| DNA polymerase III subunit epsilon [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538625|gb|AEO08602.1| DNA polymerase III epsilon chain [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 239
Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 110/237 (46%), Positives = 144/237 (60%), Gaps = 14/237 (5%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG+N I HR+IEIG VEI NR+ TGNN H YI P R E AL IH
Sbjct: 5 RTIILDTETTGINKISLPHINHRVIEIGAVEIINRRFTGNNFHVYIQPNRLIESGALKIH 64
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY--SNFTKYIY 116
G+T FL +K F +I D FLNYV NSE++IHNA+FD+GF++ EL +L + N +
Sbjct: 65 GITNSFLSDKPFFKDISDQFLNYVKNSELVIHNASFDLGFINQELEILNHKIKNINTFC- 123
Query: 117 RITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
I DTL +AR + GK+N+LDALC RY I+K HR +H ++DA LL ++YL MT GQ ++
Sbjct: 124 SIIDTLKIARMLFPGKKNTLDALCKRYKINKSHRKVHSAIVDAYLLGKLYLLMTGGQESM 183
Query: 177 ---NFKPKINNSNNIETKIKIPN-NIPIKLANSNELVQHNMIL-SKIDKHSNGRCIW 228
N N N++ IK N ++ I E+ H L S ID N C+W
Sbjct: 184 FSFNTIDHKKNPQNLKKNIKRKNSSLRILYPTLKEMDLHKKYLQSMID--DNSICLW 238
>gi|385850916|ref|YP_005897431.1| DNA polymerase III subunit epsilon [Neisseria meningitidis
M04-240196]
gi|325205739|gb|ADZ01192.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
M04-240196]
Length = 244
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 139/239 (58%), Gaps = 21/239 (8%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 EVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---- 176
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGEA 183
Query: 177 -----NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
KP + + K+K+ IK A+ EL H L + + CIW+K
Sbjct: 184 EEEEPAAKPVASAEMKLGAKLKV-----IK-ADEAELAAHGQYLDGLGEA----CIWRK 232
>gi|86747524|ref|YP_484020.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
HaA2]
gi|86570552|gb|ABD05109.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
HaA2]
Length = 231
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 115/165 (69%), Gaps = 2/165 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H YINP RD A A+HGL++
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEIYNRMPTGQVYHQYINPERDMPAEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+++ D F++++ ++ ++IHNA+FD+GF++ EL+ L + + R+ DTL
Sbjct: 62 EFLADKPVFAQVADAFIDFIGDAPLVIHNASFDIGFINAELARLSRAAIPR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYL 167
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYI 164
>gi|421544830|ref|ZP_15990902.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM140]
gi|421546915|ref|ZP_15992956.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM183]
gi|421549165|ref|ZP_15995183.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM2781]
gi|421553095|ref|ZP_15999063.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM576]
gi|402322391|gb|EJU57853.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM183]
gi|402322623|gb|EJU58075.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM140]
gi|402324555|gb|EJU59987.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM2781]
gi|402329005|gb|EJU64368.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM576]
Length = 244
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 140/241 (58%), Gaps = 21/241 (8%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+ R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGL
Sbjct: 2 IQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGL 61
Query: 61 TTKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
T + L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +
Sbjct: 62 TIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTV 121
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 122 TDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMG 181
Query: 177 -------NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
KP + + K+K+ IK A+ EL H L + + CIW+
Sbjct: 182 EAEEEEPAAKPVASAEMKLGAKLKV-----IK-ADEAELAAHEKYLDGLGEA----CIWR 231
Query: 230 K 230
K
Sbjct: 232 K 232
>gi|333367812|ref|ZP_08460046.1| DNA polymerase III, epsilon subunit [Psychrobacter sp. 1501(2011)]
gi|332978349|gb|EGK15074.1| DNA polymerase III, epsilon subunit [Psychrobacter sp. 1501(2011)]
Length = 577
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 81/174 (46%), Positives = 119/174 (68%), Gaps = 1/174 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +++D ETTGL+ + G R+IE+G +E+ NR+ TG LH YINP R + + +HG+T
Sbjct: 306 RQLIMDTETTGLDALKGDRVIEVGIIELVNRKFTGEKLHVYINPERGMDDEVIRVHGITE 365
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K KF E+ ++ +E+I HNA FD+ FL ME +G S+F + + +TD+L
Sbjct: 366 AFLADKPKFKEVAKPLYEFMLGAELIAHNAPFDMSFLSMEFDRVGLSDFAEKV-TVTDSL 424
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+MA++ + G++N+LDAL R N+ K+ RT HG LLD+E+LAEVYLAMT GQ L
Sbjct: 425 VMAKQQYPGQKNTLDALVRRLNVGKMDRTFHGALLDSEILAEVYLAMTGGQVAL 478
>gi|218768496|ref|YP_002343008.1| DNA polymerase III subunit epsilon [Neisseria meningitidis Z2491]
gi|254805280|ref|YP_003083501.1| DNA polymerase III subunit epsilon [Neisseria meningitidis alpha14]
gi|385338330|ref|YP_005892203.1| DNA polymerase III subunit epsilon [Neisseria meningitidis WUE
2594]
gi|416166382|ref|ZP_11607560.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568]
gi|433475921|ref|ZP_20433258.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 88050]
gi|433480058|ref|ZP_20437345.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 63041]
gi|433513822|ref|ZP_20470610.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 63049]
gi|433516057|ref|ZP_20472823.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
2004090]
gi|433517895|ref|ZP_20474638.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 96023]
gi|433519214|ref|ZP_20475937.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 65014]
gi|433524574|ref|ZP_20481232.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 97020]
gi|433528572|ref|ZP_20485180.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM3652]
gi|433530779|ref|ZP_20487363.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM3642]
gi|433533045|ref|ZP_20489605.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
2007056]
gi|433534922|ref|ZP_20491458.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
2001212]
gi|433541359|ref|ZP_20497807.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 63006]
gi|121052504|emb|CAM08843.1| DNA polymerase III, epsilon chain [Neisseria meningitidis Z2491]
gi|254668822|emb|CBA06831.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
alpha14]
gi|319410744|emb|CBY91127.1| DNA polymerase III epsilon subunit [Neisseria meningitidis WUE
2594]
gi|325127153|gb|EGC50103.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis N1568]
gi|432209030|gb|ELK65001.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 88050]
gi|432215018|gb|ELK70909.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 63041]
gi|432246469|gb|ELL01916.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 63049]
gi|432252383|gb|ELL07739.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
2004090]
gi|432252639|gb|ELL07991.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 96023]
gi|432256142|gb|ELL11466.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 65014]
gi|432258801|gb|ELL14082.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 97020]
gi|432264251|gb|ELL19455.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM3652]
gi|432265589|gb|ELL20781.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM3642]
gi|432265788|gb|ELL20979.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
2007056]
gi|432270672|gb|ELL25808.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis
2001212]
gi|432276900|gb|ELL31954.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 63006]
Length = 244
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 139/239 (58%), Gaps = 21/239 (8%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 EVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---- 176
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGEA 183
Query: 177 -----NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
KP + + K+K+ IK A+ EL H L + + CIW+K
Sbjct: 184 EEEEPAAKPVASAEMKLGAKLKV-----IK-ADEAELAAHGQYLDGLGEA----CIWRK 232
>gi|91205177|ref|YP_537532.1| DNA polymerase III subunit epsilon [Rickettsia bellii RML369-C]
gi|157827486|ref|YP_001496550.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
gi|122425898|sp|Q1RJM1.1|DPO3E_RICBR RecName: Full=DNA polymerase III subunit epsilon
gi|91068721|gb|ABE04443.1| DNA polymerase III epsilon chain [Rickettsia bellii RML369-C]
gi|157802790|gb|ABV79513.1| DNA polymerase III subunit epsilon [Rickettsia bellii OSU 85-389]
Length = 229
Score = 182 bits (462), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 5/225 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ GHRI+EIG +E+ N+ +TG + H+Y+NP RD A IHG++
Sbjct: 5 REIILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPFEAYRIHGISG 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY-IYRITDT 121
+FLK+K F I D+FL ++++S+++IHNA FDV FL+ ELSLL + + DT
Sbjct: 65 EFLKDKPLFHTIADDFLEFIADSKLVIHNAPFDVKFLNHELSLLKRAEIKLLELEHAIDT 124
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN----LN 177
L+MAR + G + SLDALC R+ + R LHG L DA LLAEVY+ +T G+ + L+
Sbjct: 125 LVMARSMFPGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTGGRQSAFKMLD 184
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHS 222
KINN + + NIP+ EL +H LS++ K +
Sbjct: 185 KAAKINNLSYNRLDSQAHRNIPVIKPTKEELQKHKEFLSRVLKQA 229
>gi|359409296|ref|ZP_09201764.1| DNA polymerase III, epsilon subunit [SAR116 cluster alpha
proteobacterium HIMB100]
gi|356676049|gb|EHI48402.1| DNA polymerase III, epsilon subunit [SAR116 cluster alpha
proteobacterium HIMB100]
Length = 235
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 97/230 (42%), Positives = 140/230 (60%), Gaps = 15/230 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
RHIVLD ETTGL+ DGHRIIEIG VE+ N +TG +LH YINP R+ + A IHGL+
Sbjct: 2 RHIVLDTETTGLSAKDGHRIIEIGAVEMVNLSLTGQSLHLYINPEREIDAGAQEIHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F++I+ F +++ ++IHNA FD+GFL+ ELS G + + R+ DTL
Sbjct: 62 EFLADKPVFADILSAFTDFIGEDILVIHNAPFDIGFLNAELSRCGQPPLS--MERVVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNF--- 178
+AR+ + G + SLDALC R+ + HR LHG L+DA+LLA VY+ + G Q L
Sbjct: 120 PLAREKYPGAQASLDALCRRFGVDNSHRDLHGALIDADLLAAVYVELQGGRQPGLQLHED 179
Query: 179 -KPKINNSNNIE-TKIK--IPNNIPIKLANS-----NELVQHNMILSKID 219
P I ++ E T + I N P++ S +E +H ++ ++D
Sbjct: 180 TAPPITEASAAEDTDLSGFILTNKPVRPPRSFTLPEDEAAEHKALIEQMD 229
>gi|146337369|ref|YP_001202417.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. ORS 278]
gi|365892149|ref|ZP_09430480.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Bradyrhizobium sp. STM 3809]
gi|146190175|emb|CAL74167.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Bradyrhizobium sp. ORS 278]
gi|365331814|emb|CCE03011.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Bradyrhizobium sp. STM 3809]
Length = 232
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 118/175 (67%), Gaps = 3/175 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H YINP RD A A+HGL+T
Sbjct: 2 REIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPQRDMPAEAFAVHGLST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F E+V++FL ++ ++ ++IHNA+FD+GF++ EL + + + R+ DTL
Sbjct: 62 EFLSDKPLFHEVVEDFLAFIGDAPLVIHNASFDIGFINAELDRVKRAAIPR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL 176
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQL 174
>gi|404378937|ref|ZP_10984013.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
29453]
gi|294483228|gb|EFG30914.1| DNA polymerase III, epsilon subunit [Simonsiella muelleri ATCC
29453]
Length = 272
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 143/235 (60%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGL---NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHG 59
R I+LD ETTGL + R+IE +E+ NRQ+TG NLH I+P R+ + A A+H
Sbjct: 8 RQIILDTETTGLYANAAENPDRLIEFAGLEMMNRQLTGRNLHLLIHPQREISEEATAVHN 67
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
+T L +K F+++ +++ +E+IIHNA FDVGFL+ E + +G N + I IT
Sbjct: 68 ITLSQLVDKPIFAQVAQQIFDFIKGAELIIHNAKFDVGFLNAEFARVGLPN-VETICEIT 126
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MA+ ++ G++NSLDALC+R + + R HG L+D ELL+EVYL MTRGQ +L
Sbjct: 127 DTLEMAKNLYHGQKNSLDALCNRLGVDRSKRVFHGALIDCELLSEVYLGMTRGQFSLMAD 186
Query: 180 PKINNSNN------IETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIW 228
+ + N+ ++ + ++ + LAN +EL H IL+ +DK G CI+
Sbjct: 187 WEDEDENSEINQIVVQHTFQRTGSLKVVLANEDELAAHEAILADLDKTVGGSCIY 241
>gi|421561557|ref|ZP_16007398.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM2657]
gi|433537454|ref|ZP_20493949.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 77221]
gi|254670687|emb|CBA06809.1| DNA polymerase III, epsilon chain [Neisseria meningitidis alpha153]
gi|402337257|gb|EJU72506.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM2657]
gi|432271219|gb|ELL26345.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis 77221]
Length = 244
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 98/239 (41%), Positives = 139/239 (58%), Gaps = 21/239 (8%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +TD
Sbjct: 64 EVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTVTD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---- 176
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMGEA 183
Query: 177 -----NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
KP + + K+K+ IK A+ EL H L + + CIW+K
Sbjct: 184 EEEEPAAKPVASAEMKLGAKLKV-----IK-ADEAELAAHEKYLDGLGEA----CIWRK 232
>gi|456351788|dbj|BAM86233.1| DNA polymerase III subunit epsilon [Agromonas oligotrophica S58]
Length = 232
Score = 181 bits (460), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 91/198 (45%), Positives = 126/198 (63%), Gaps = 8/198 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H YINP RD A A+HGL++
Sbjct: 2 REIVLDTETTGLDALRGDRLVEIGCVEILNRMPTGQVFHRYINPQRDMPAEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F E+V++FL ++ ++ ++IHNA+FD+GF++ EL + + + R+ DTL
Sbjct: 62 EFLADKPLFHEVVEDFLEFIGDAPLVIHNASFDIGFINAELDRVKRAAIPR--DRLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
++AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L
Sbjct: 120 MLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQL----- 174
Query: 182 INNSNNIETKIKIPNNIP 199
I + E +I + + P
Sbjct: 175 ILTQDTQEIRIGMAGDTP 192
>gi|414164583|ref|ZP_11420830.1| DNA polymerase III, epsilon subunit [Afipia felis ATCC 53690]
gi|410882363|gb|EKS30203.1| DNA polymerase III, epsilon subunit [Afipia felis ATCC 53690]
Length = 230
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 93/230 (40%), Positives = 136/230 (59%), Gaps = 8/230 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVE+ N TG H YINP RD + A A+HGL++
Sbjct: 2 REIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTFHVYINPERDMPQEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F + D FL ++ ++ +IIHNA+FD+GF++MEL L + R+ DTL
Sbjct: 62 EFLSDKPLFVAVADEFLEFIGDAPLIIHNASFDIGFINMELERLKRQAIPR--DRLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAM--TRGQSNLNFKP 180
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + R S + +
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSSLILAET 179
Query: 181 KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + +E + ++ S+E+ H ++ + + IW++
Sbjct: 180 QTTSIRIVEVERRVRETPLSPRVTSDEIEAHRAFVATLGDNP----IWRE 225
>gi|365884923|ref|ZP_09423949.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Bradyrhizobium sp. ORS 375]
gi|365286471|emb|CCD96480.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Bradyrhizobium sp. ORS 375]
Length = 232
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 118/175 (67%), Gaps = 3/175 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H YINP RD A A+HGL++
Sbjct: 2 REIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPERDMPAEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F E+V++FL ++ ++ ++IHNA+FD+GF++ EL + + + R+ DTL
Sbjct: 62 EFLADKPLFHEVVEDFLTFIGDAPLVIHNASFDIGFINAELDRVKRAAIPR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL 176
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQL 174
>gi|288956846|ref|YP_003447187.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
gi|288909154|dbj|BAI70643.1| DNA polymerase III subunit epsilon [Azospirillum sp. B510]
Length = 227
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 86/193 (44%), Positives = 123/193 (63%), Gaps = 3/193 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG +GHR++EIGC+E+ N TG H Y+NP RD A A+HGL+
Sbjct: 2 REIVLDTETTGFKPEEGHRLVEIGCIELVNHLATGERFHVYLNPERDMPPEAFAVHGLSE 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+++ +F+ ++ +S ++IHNAAFD+ FL+ EL + GY K R DTL
Sbjct: 62 EFLADKPLFNDVAADFVAFIGDSPLVIHNAAFDMHFLNWELKIAGYPVMPK--DRAIDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
LMAR+ G +LDALC R+ + +RTLHG LLDA+LLAEVYL + G Q+ L+F
Sbjct: 120 LMARQKFPGSPATLDALCKRFGVDNSNRTLHGALLDAQLLAEVYLELLGGRQTGLSFAGG 179
Query: 182 INNSNNIETKIKI 194
+ + +++
Sbjct: 180 PVSKGGVAGPVRV 192
>gi|148251776|ref|YP_001236361.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. BTAi1]
gi|146403949|gb|ABQ32455.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. BTAi1]
Length = 232
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/198 (46%), Positives = 124/198 (62%), Gaps = 8/198 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H YINP RD A A+HGL++
Sbjct: 2 REIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHRYINPERDMPAEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F EIV+ FL ++ ++ ++IHNA+FD+GF++ EL + + + R+ DTL
Sbjct: 62 EFLADKPLFHEIVEEFLEFIGDAPLVIHNASFDIGFINAELDRVKRAAIPR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQL----- 174
Query: 182 INNSNNIETKIKIPNNIP 199
I + E ++ + P
Sbjct: 175 ILTQDTQEIRVGAAGDTP 192
>gi|418288692|ref|ZP_12901142.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM233]
gi|418290950|ref|ZP_12903032.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM220]
gi|372200732|gb|EHP14763.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM220]
gi|372201304|gb|EHP15246.1| DNA polymerase III, epsilon subunit [Neisseria meningitidis NM233]
Length = 253
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 97/241 (40%), Positives = 140/241 (58%), Gaps = 21/241 (8%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
+ R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGL
Sbjct: 11 IQRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGL 70
Query: 61 TTKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
T + L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +
Sbjct: 71 TIEVLEGKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTV 130
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL +VYLAMTR Q +L
Sbjct: 131 TDTLAMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGKVYLAMTRRQFDLMG 190
Query: 177 -------NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
KP + + K+K+ IK A+ EL H L + + CIW+
Sbjct: 191 EAEEEEPAAKPVASAEMKLGAKLKV-----IK-ADEAELAAHGQYLDGLGEA----CIWR 240
Query: 230 K 230
K
Sbjct: 241 K 241
>gi|262375943|ref|ZP_06069174.1| ribonuclease HI [Acinetobacter lwoffii SH145]
gi|262309037|gb|EEY90169.1| ribonuclease HI [Acinetobacter lwoffii SH145]
Length = 458
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 145/232 (62%), Gaps = 8/232 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + ++ +HG+T
Sbjct: 231 RQLILDTETTGFYYQDGDRIIEVGALEMINRKLTGSSIHIYINP-KTPVGDSVNVHGITD 289
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K F EI +Y+ +EII HNA FD+ FLDME G+ ++ + +TDTL
Sbjct: 290 EFLQDKPLFEEISQVLFDYLHGAEIIAHNATFDMNFLDMEFKRAGFKALSE-VCDVTDTL 348
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF---- 178
+A+ H G++NSLDAL RY I + RT HG LLDAE+L++VYLAMT GQ + +
Sbjct: 349 ALAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILSDVYLAMTGGQVSFDIDALS 408
Query: 179 KPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + NS + +++I +P+ L + EL +H + + ++ C++ K
Sbjct: 409 QSEDQNSRSGMARVEI--ELPVILPSEQELQEHENWVKQFEEKHGTACLFAK 458
>gi|85709813|ref|ZP_01040878.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
gi|85688523|gb|EAQ28527.1| DNA polymerase III epsilon subunit [Erythrobacter sp. NAP1]
Length = 234
Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 94/240 (39%), Positives = 135/240 (56%), Gaps = 19/240 (7%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R ++ D ETTGL+ G R++EIGCVE+ R TG + H Y NP RD +A A+HGL+
Sbjct: 2 REVIFDTETTGLDPKTGDRMVEIGCVEMVGRVETGRSYHAYYNPERDMPSAAEAVHGLSI 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL+ K +FSE D L ++ ++ ++ HNA FD GFL+ EL +G + + R+ DT+
Sbjct: 62 SFLETKPRFSETADELLEFLGDAPLVAHNAGFDFGFLNAELERIGRESIA--MDRMVDTV 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ-------SN 175
+ARK H G + SLDALC RY I + HR HG LLDAELLA+VY+ +T G+ ++
Sbjct: 120 AIARKKHPGAKLSLDALCTRYGIDRSHRVKHGALLDAELLAQVYVELTGGRQIGLELAAD 179
Query: 176 LNFKPKINNSNNIETKIKIPNNIPIK-----LANSNELVQHNMILSKIDKHSNGRCIWKK 230
P +ET I ++ P + A+ NEL +H + I IW +
Sbjct: 180 TVEDPHAAAEKVVETVIGRRSDQPFREPRPHAASENELARHREFVEGIKD-----AIWAR 234
>gi|341613849|ref|ZP_08700718.1| DNA polymerase III, epsilon subunit [Citromicrobium sp. JLT1363]
Length = 233
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 136/239 (56%), Gaps = 18/239 (7%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IV D ETTG++ GHR++EIGCVE+ +R TG H Y NP RD A AIHGL+
Sbjct: 2 REIVFDTETTGIDPRQGHRMVEIGCVELIDRMPTGKTFHAYYNPERDMPAEAEAIHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL K F + V+ FL +V + +++ HNA FD GFL+ EL S + R DTL
Sbjct: 62 QFLSEKPLFFDEVEAFLEFVGDDKLVAHNAGFDFGFLNAELERC--SREAICLSRKIDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
+AR+ H G ++SLDALC RY + + HR HG LLDAELLA+VY+ +T G Q + P
Sbjct: 120 ELARRKHPGGKHSLDALCTRYGVDRSHRVFHGALLDAELLAQVYIELTGGRQIAMGLVPV 179
Query: 182 INNSNNIETKIKI----PN-NIPIK-----LANSNELVQHNMILSKIDKHSNGRCIWKK 230
+N +I P+ + P++ AN EL++H L +I R IW +
Sbjct: 180 ADNVGEAARDDRIVPLHPSADRPVRPPRPHTANEAELMRHAAFLERI-----ARPIWNR 233
>gi|374571854|ref|ZP_09644950.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. WSM471]
gi|374420175|gb|EHQ99707.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. WSM471]
Length = 238
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 115/175 (65%), Gaps = 3/175 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVE+ NR TG + H YINP RD A A+HGL+
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEMLNRMPTGQSFHVYINPERDMPAEAFAVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL K F E+VD+FL ++ ++ ++IHNA+FD+ F++ EL + + R+ DTL
Sbjct: 62 EFLATKQLFHEVVDDFLEFIGDAPLVIHNASFDISFINAELDRIKRPGIPR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL 176
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQL 174
>gi|42520014|ref|NP_965929.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
gi|99034422|ref|ZP_01314429.1| hypothetical protein Wendoof_01000768 [Wolbachia endosymbiont of
Drosophila willistoni TSC#14030-0811.24]
gi|42409751|gb|AAS13863.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila melanogaster]
Length = 231
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 104/230 (45%), Positives = 144/230 (62%), Gaps = 9/230 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ GHRIIEIGCVE+ NR TG H Y+NP RD + IHG++
Sbjct: 6 REIVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPERDIPYHSFKIHGISE 65
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K FS++ FL+++SN ++IHNA FDV FL+MELS L + R+ DTL
Sbjct: 66 EFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELSKLNARLISS--DRVLDTL 123
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ARK G SL+ALC R++IS +R LHG L+DA+LLA+VY+ +T G F +
Sbjct: 124 PLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFLFDNEC 183
Query: 183 N-NSNNIETKIKIPNNIPIK-LANSNELVQHNMILSKIDKHSNGRCIWKK 230
N +SN+ + K+ N P + L NS E+ +H +L KI+ +W K
Sbjct: 184 NQDSNSTFVQHKVRNLTPREHLPNSEEIDEHKKLLDKINN-----TLWNK 228
>gi|386399428|ref|ZP_10084206.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. WSM1253]
gi|385740054|gb|EIG60250.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. WSM1253]
Length = 238
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 115/175 (65%), Gaps = 3/175 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVE+ NR TG + H YINP RD A A+HGL+
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEMLNRMPTGQSFHVYINPERDMPAEAFAVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL K F E+VD+FL ++ ++ ++IHNA+FD+ F++ EL + + R+ DTL
Sbjct: 62 EFLATKQLFHEVVDDFLEFIGDAPLVIHNASFDISFINAELDRIKRPAIPR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL 176
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQL 174
>gi|336233260|ref|YP_004590006.1| DNA polymerase III subunit epsilon [Buchnera aphidicola (Cinara
tujafilina)]
gi|335345201|gb|AEH39747.1| DNA polymerase III, epsilon subunit [Buchnera aphidicola (Cinara
tujafilina)]
Length = 236
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 103/206 (50%), Positives = 132/206 (64%), Gaps = 18/206 (8%)
Query: 3 RHIVLDIETTGLNIIDG-----HRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IVLDIETTG+N DG HRIIEIG +E+ NRQ+TGN LHYY+ P + A I
Sbjct: 2 RQIVLDIETTGMNQ-DGLLYLNHRIIEIGMIELINRQVTGNILHYYLKPDCKINEEAYKI 60
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGY-----SNFT 112
HG++ FLKNK +F +I N LN++ N+EII+HNA FD+GFLD E SLL ++F
Sbjct: 61 HGISESFLKNKPRFKDIFKNLLNFLHNAEIIVHNATFDIGFLDYEFSLLNLKIQKINDFC 120
Query: 113 KYIYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG 172
I DTL +ARK+ GK+NSL+ALC+RY I R++HG LLDA+LL +VY MT
Sbjct: 121 ----NILDTLTLARKLFPGKKNSLNALCNRYKIPTKDRSVHGALLDAKLLTKVYRFMTVK 176
Query: 173 QSNLNFKPKINNSNNIETKIKIPNNI 198
Q + F N NI+ KI + I
Sbjct: 177 QEKIFFS---NTPRNIQENYKINSRI 199
>gi|115522405|ref|YP_779316.1| DNA polymerase III subunit epsilon [Rhodopseudomonas palustris
BisA53]
gi|115516352|gb|ABJ04336.1| DNA polymerase III, epsilon subunit [Rhodopseudomonas palustris
BisA53]
Length = 229
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 85/165 (51%), Positives = 112/165 (67%), Gaps = 2/165 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H YINP RD A A+HGL+
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEILNRMPTGQIYHCYINPERDMPAEAFAVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL K F+E+ + FL +++++ ++IHNA+FD+GF++ EL+ L + R+ DTL
Sbjct: 62 EFLSTKPLFAEVAEEFLAFIADAPLVIHNASFDIGFINAELARLSQPPIPR--DRLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYL 167
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYV 164
>gi|240016725|ref|ZP_04723265.1| putative DNA polymerase III, epsilon chain [Neisseria gonorrhoeae
FA6140]
Length = 244
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 98/241 (40%), Positives = 140/241 (58%), Gaps = 21/241 (8%)
Query: 1 MHRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGL 60
M R I+LD ETTGL G R++E +E+ NRQ+T NLH Y++P RD + A +HGL
Sbjct: 2 MTRQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYVHPERDMPEEAARVHGL 61
Query: 61 TTKFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
T + L KN F+E+ +++ +E+IIHNA FDVGFL+ME +G + +
Sbjct: 62 TIQVLEEKNAPPFAEVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRVGLPTVEELGCTV 121
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL +AR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 122 TDTLAIAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRRQFDLMG 181
Query: 177 -------NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
KP + + K+K+ IK A+ EL H L + + CIW+
Sbjct: 182 ETEEEETTAKPVASAEMKLGAKLKV-----IK-ADEAELAAHEEYLDGLGEA----CIWR 231
Query: 230 K 230
K
Sbjct: 232 K 232
>gi|209883542|ref|YP_002287399.1| DNA polymerase III subunit epsilon [Oligotropha carboxidovorans
OM5]
gi|337739388|ref|YP_004631116.1| DNA polymerase III subunit epsilon [Oligotropha carboxidovorans
OM5]
gi|386028407|ref|YP_005949182.1| DNA polymerase III subunit epsilon [Oligotropha carboxidovorans
OM4]
gi|209871738|gb|ACI91534.1| DNA polymerase III, epsilon subunit [Oligotropha carboxidovorans
OM5]
gi|336093475|gb|AEI01301.1| DNA polymerase III subunit epsilon [Oligotropha carboxidovorans
OM4]
gi|336097052|gb|AEI04875.1| DNA polymerase III subunit epsilon [Oligotropha carboxidovorans
OM5]
Length = 230
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 89/175 (50%), Positives = 117/175 (66%), Gaps = 3/175 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVE+ N TG H YINP RD + A A+HGL+T
Sbjct: 2 REIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPERDMPQEAFAVHGLST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ + D FL ++ ++ +IIHNA+FD+GF++MEL L + R+ DTL
Sbjct: 62 EFLADKPLFAAVADEFLEFIGDAPLIIHNASFDIGFINMELDRLKRAAIP--CERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL 176
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS+L
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSSL 174
>gi|225677154|ref|ZP_03788153.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Muscidifurax uniraptor]
gi|225590821|gb|EEH12049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Muscidifurax uniraptor]
Length = 231
Score = 180 bits (457), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/227 (45%), Positives = 143/227 (62%), Gaps = 4/227 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ GHRIIEIGCVE+ NR TG H Y+NP RD + IHG++
Sbjct: 6 REIVLDTETTGLDTGSGHRIIEIGCVELINRIPTGKVFHRYLNPERDIPYHSFKIHGISE 65
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K FS++ FL+++SN ++IHNA FDV FL+MELS L + R+ DTL
Sbjct: 66 EFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELSKLNAGLISS--DRVLDTL 123
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ARK G SL+ALC R++IS +R LHG L+DA+LLA+VY+ +T G F +
Sbjct: 124 PLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFLFDNEC 183
Query: 183 N-NSNNIETKIKIPNNIPIK-LANSNELVQHNMILSKIDKHSNGRCI 227
N +SN+ + K+ N P + NS E+ +H +L KI+ +CI
Sbjct: 184 NQDSNSTFVQHKVRNLTPREHSPNSEEIDEHKKLLDKINNTLWNKCI 230
>gi|452965410|gb|EME70433.1| DNA polymerase III, epsilon subunit [Magnetospirillum sp. SO-1]
Length = 227
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 85/172 (49%), Positives = 115/172 (66%), Gaps = 2/172 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG + + GHR++EIGCVE+ N TG+ H Y NP RD + A +HGL+
Sbjct: 2 REIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGSVFHRYCNPERDMPEEAFKVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K F+EIV +FL ++ ++ ++IHNA FD+ FL+ EL+ LG+ + R DT+
Sbjct: 62 DFLSDKPLFAEIVADFLEFIGDAPLVIHNAEFDMRFLNAELARLGFPALP--MSRSIDTV 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
LMARK G + +LDALC R+ I HRT HG LLD+ELLAEVYL + G+
Sbjct: 120 LMARKKFPGAQANLDALCRRFEIDNTHRTRHGALLDSELLAEVYLQLIGGRQ 171
>gi|296284843|ref|ZP_06862841.1| DNA polymerase III epsilon subunit [Citromicrobium bathyomarinum
JL354]
Length = 240
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 92/239 (38%), Positives = 133/239 (55%), Gaps = 18/239 (7%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+ D ETTG++ GHR++EIGCVE+ +R TG H Y NP RD A AIHGL+
Sbjct: 9 REIIFDTETTGIDPRQGHRMVEIGCVELVDRMPTGETFHAYYNPERDMPAEAEAIHGLSA 68
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K +F++ VD FL++V + ++ HNA FD FL+ EL L + R DTL
Sbjct: 69 QFLADKPRFADAVDEFLDFVRDDMLVAHNAGFDFAFLNAELELCTREPIC--LTRKIDTL 126
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
MAR+ + G ++SLDALC RY + + HR HG LLDAELLA+VY+ +T G Q + +
Sbjct: 127 EMARRKNPGGKHSLDALCSRYGVDRSHRVFHGALLDAELLAQVYIELTGGRQIAMGLIGE 186
Query: 182 INNSNNIETKIKIPNNIP----------IKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + ++ +P A+ EL H L ++ R IW +
Sbjct: 187 LAEGDTAPAEPELAAMLPSGDRPRRPARPHSASEQELAAHAAFLDRMT-----RPIWHR 240
>gi|421250851|ref|ZP_15707168.1| DNA polymerase III subunit epsilon, partial [Pasteurella multocida
subsp. multocida str. Anand1_buffalo]
gi|401699084|gb|EJS90668.1| DNA polymerase III subunit epsilon, partial [Pasteurella multocida
subsp. multocida str. Anand1_buffalo]
Length = 215
Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 131/207 (63%), Gaps = 5/207 (2%)
Query: 29 EIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNFLNYVSNSEII 88
E+ NR++TGNN H YI P R + A+ +HG+T L +K F+E+ F++Y+ +E++
Sbjct: 1 EMINRRLTGNNFHIYIKPNRPVDPDAIKVHGITDDMLADKPMFNEVAQQFIDYIQGAELL 60
Query: 89 IHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLMARKIHTGKRNSLDALCDRYNISKI 148
IHNA FDVGF+D E L + T I +TDTL MAR+++ GKRNSLDALCDR I
Sbjct: 61 IHNAPFDVGFMDYEFKKLNLNINTDAICMVTDTLQMARQMYPGKRNSLDALCDRLGIDNS 120
Query: 149 HRTLHGGLLDAELLAEVYLAMTRGQSNL--NFKPKINNS---NNIETKIKIPNNIPIKLA 203
RTLHG LLDAE+LA+VYL MT GQ++L +P+I + I++ + ++
Sbjct: 121 KRTLHGALLDAEILADVYLTMTGGQTSLFDENEPEIAVAAVQEQIQSAVAFSQDLKRLQP 180
Query: 204 NSNELVQHNMILSKIDKHSNGRCIWKK 230
N++EL H L ++K S G C+W+K
Sbjct: 181 NADELQAHLDYLLLLNKKSKGNCLWEK 207
>gi|85714087|ref|ZP_01045076.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
gi|85699213|gb|EAQ37081.1| DNA polymerase III, epsilon subunit [Nitrobacter sp. Nb-311A]
Length = 230
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 95/234 (40%), Positives = 139/234 (59%), Gaps = 15/234 (6%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++E+GCVEI NR TG H YINP RD + A A+HGL++
Sbjct: 2 REIVLDTETTGLDPVRGDRLVELGCVEIFNRMPTGQTFHCYINPERDMPQEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+++VD FL ++ ++ +IIHNA+FD+ F++ EL L + R+ DTL
Sbjct: 62 EFLADKPLFAQVVDEFLEFIGDAPLIIHNASFDISFINAELERLKRQVIGR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L
Sbjct: 120 LIARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYIDLIGARQSQLILTE- 178
Query: 182 INNSNNIETKIKIP---NNIPI--KLANSNELVQHNMILSKIDKHSNGRCIWKK 230
S + +++P +P+ ++ ++ + N + + +K IW +
Sbjct: 179 -TTSRQLGGTLELPRRQRTVPLASRVTEADRIAHRNFVATLGEK-----AIWTE 226
>gi|261377592|ref|ZP_05982165.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685]
gi|269146340|gb|EEZ72758.1| DNA polymerase III, epsilon subunit [Neisseria cinerea ATCC 14685]
Length = 244
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 99/239 (41%), Positives = 138/239 (57%), Gaps = 21/239 (8%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL G R++E +E+ NRQ+T NLH YI+P RD + A +HGLT
Sbjct: 4 RQIILDTETTGLYADGGDRLVEFAGLEMVNRQMTDKNLHLYIHPERDMPEEAARVHGLTI 63
Query: 63 KFL--KNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITD 120
+ L KN F+ + +++ +E+IIHNA FDVGFL+ME +G + ITD
Sbjct: 64 EVLEGKNAPPFARVGRQIADFLRGAELIIHNAKFDVGFLNMEFRRMGLPTVEELGCTITD 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL---- 176
TL MAR++ G++ SLDALC+R+++ + R LHG L+D ELL EVYLAMTR Q +L
Sbjct: 124 TLSMAREMFPGQKASLDALCNRFSVDRSKRVLHGALIDCELLGEVYLAMTRQQFDLMGEA 183
Query: 177 -----NFKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
KP + + K+K+ IK A+ EL H L + + CIW+K
Sbjct: 184 EEEGPAAKPVASAEMKLGAKLKV-----IK-ADEAELAAHEEYLDGLGES----CIWRK 232
>gi|262368670|ref|ZP_06061999.1| ribonuclease HI [Acinetobacter johnsonii SH046]
gi|262316348|gb|EEY97386.1| ribonuclease HI [Acinetobacter johnsonii SH046]
Length = 474
Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 137/233 (58%), Gaps = 10/233 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGR---DSEKSALAIHG 59
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + DSE +HG
Sbjct: 247 RQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINPKKPVGDSEN----VHG 302
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
++ FLK+K + EI D Y+ +EII HNA+FD+ FLDME G+ ++ + +T
Sbjct: 303 ISDDFLKDKPLYQEIADTLFAYLKGAEIIAHNASFDMNFLDMEFKRAGFVALSE-VCAVT 361
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
DTL MA+ H G++NSLDAL RY I + RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 362 DTLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILADVYLAMTGGQVSFDMD 421
Query: 180 P--KINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
N + + + + ++ EL H + + + C++ K
Sbjct: 422 ALSHSEQQNGQSQRQALDIELAVIQPSAEELEAHETWVKQYQEKHGTPCLFAK 474
>gi|414176729|ref|ZP_11430958.1| DNA polymerase III, epsilon subunit [Afipia broomeae ATCC 49717]
gi|410886882|gb|EKS34694.1| DNA polymerase III, epsilon subunit [Afipia broomeae ATCC 49717]
Length = 231
Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 81/165 (49%), Positives = 114/165 (69%), Gaps = 2/165 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVE+ NR TG H Y+NP RD + A A+HGL++
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEMINRMPTGQTFHVYLNPERDMPQEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ + D+FL ++ ++ ++IHNA+FD+GF++ EL+ + + + R+ DTL
Sbjct: 62 EFLADKPLFAAVADDFLTFIGDAPLVIHNASFDIGFINAELTKVSRAAIPR--DRLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYL 167
+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+
Sbjct: 120 TLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYI 164
>gi|367475402|ref|ZP_09474864.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Bradyrhizobium sp. ORS 285]
gi|365272293|emb|CCD87332.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Bradyrhizobium sp. ORS 285]
Length = 232
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 88/175 (50%), Positives = 117/175 (66%), Gaps = 3/175 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVEI NR TG H YINP RD A A+HGL++
Sbjct: 2 REIVLDTETTGLDALRGDRLVEIGCVEIINRMPTGQVFHVYINPERDMPAEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F E+V++FL ++ ++ ++IHNA+FD+GF++ EL + + R+ DTL
Sbjct: 62 EFLADKPLFHEVVEDFLAFIGDAPLVIHNASFDIGFINAELDRAKRAAIPR--DRLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL 176
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYVDLVGARQSQL 174
>gi|51473901|ref|YP_067658.1| DNA polymerase III subunit epsilon [Rickettsia typhi str.
Wilmington]
gi|383752676|ref|YP_005427776.1| DNA polymerase III subunit epsilon [Rickettsia typhi str. TH1527]
gi|383843511|ref|YP_005424014.1| DNA polymerase III subunit epsilon [Rickettsia typhi str.
B9991CWPP]
gi|81826284|sp|Q68W16.1|DPO3E_RICTY RecName: Full=DNA polymerase III subunit epsilon
gi|51460213|gb|AAU04176.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
Wilmington]
gi|380759319|gb|AFE54554.1| DNA polymerase III subunit epsilon [Rickettsia typhi str. TH1527]
gi|380760158|gb|AFE55392.1| DNA polymerase III subunit epsilon [Rickettsia typhi str.
B9991CWPP]
Length = 229
Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 137/223 (61%), Gaps = 9/223 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ GHRIIEIG +E+ N+ +TG + H YINP RD A IHG++
Sbjct: 5 REIILDTETTGLDPQQGHRIIEIGAIEMVNKVLTGKHFHCYINPERDMPFEAYKIHGISG 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--IYRITD 120
+FLK+K F I ++FL ++++S +IIHNA FD+ FL+ ELSLL + K+ + D
Sbjct: 65 EFLKDKPLFHTIANDFLKFIADSTLIIHNAPFDIKFLNHELSLLKRTEI-KFLELTNTID 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFK 179
TL+MAR + G R SLDALC R+ + R LHG L DA LLAEVY+A+T G QS
Sbjct: 124 TLVMARSMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALTGGRQSTFKMI 183
Query: 180 PKINNSNNIETKI----KIPNNIPIKLANSNELVQHNMILSKI 218
K N NN+ K KI +I +K EL +H + KI
Sbjct: 184 DKPNEINNLTVKCIEVQKIKRSIVVK-PTKEELQKHKEFIDKI 225
>gi|299133202|ref|ZP_07026397.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
gi|298593339|gb|EFI53539.1| DNA polymerase III, epsilon subunit [Afipia sp. 1NLS2]
Length = 230
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 83/165 (50%), Positives = 114/165 (69%), Gaps = 2/165 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVE+ N TG H YINP RD + A A+HGL++
Sbjct: 2 REIVLDTETTGLDALRGDRLVEIGCVEMFNHMPTGQTYHVYINPERDMPQEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ + ++FL ++ ++ +IIHNA+FD+GF++MEL + + + R+ DTL
Sbjct: 62 EFLSDKPLFAAVAEDFLTFIGDAPLIIHNASFDIGFINMELERVKRAAIPR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYL 167
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYI 164
>gi|296113099|ref|YP_003627037.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
gi|416158113|ref|ZP_11605552.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1]
gi|416217726|ref|ZP_11624459.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
gi|416225073|ref|ZP_11626813.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1]
gi|416230940|ref|ZP_11628598.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1]
gi|416235518|ref|ZP_11630194.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1]
gi|416240473|ref|ZP_11632444.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
gi|416242545|ref|ZP_11633581.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
gi|416246634|ref|ZP_11635092.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
gi|416249509|ref|ZP_11636606.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
gi|416254841|ref|ZP_11638943.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
gi|421779925|ref|ZP_16216415.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
gi|295920793|gb|ADG61144.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BBH18]
gi|326560092|gb|EGE10482.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 46P47B1]
gi|326560475|gb|EGE10857.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 7169]
gi|326561678|gb|EGE12015.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 103P14B1]
gi|326564194|gb|EGE14430.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 12P80B1]
gi|326565793|gb|EGE15955.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC1]
gi|326570446|gb|EGE20486.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC8]
gi|326571129|gb|EGE21153.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis BC7]
gi|326573423|gb|EGE23391.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis 101P30B1]
gi|326575681|gb|EGE25604.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis CO72]
gi|326577147|gb|EGE27041.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis O35E]
gi|407812719|gb|EKF83503.1| DNA polymerase III epsilon subunit [Moraxella catarrhalis RH4]
Length = 432
Score = 179 bits (454), Expect = 9e-43, Method: Compositional matrix adjust.
Identities = 80/172 (46%), Positives = 119/172 (69%), Gaps = 1/172 (0%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
R +++D ETTG N G RI+E+G VE+ R+ TGN LH YINP + + + + +HG++
Sbjct: 211 ERQLIMDTETTGFNEAGGDRIVEVGIVELVGRKFTGNILHVYINPEKHMDDAVIQVHGIS 270
Query: 62 TKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDT 121
F+ +K KF+E+ +++ SE+I HNAAFD+ FL+ME + G SNF + ++TDT
Sbjct: 271 NAFVADKPKFAEVAQQIYEFMAGSEVIAHNAAFDMKFLNMEFNRAGLSNFANSV-KVTDT 329
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ 173
L +A++++ G++NSLDAL R + + RT HG LLD+E+LAEVYLAMT GQ
Sbjct: 330 LALAKQMYPGQKNSLDALVKRLGVGQKDRTFHGALLDSEILAEVYLAMTGGQ 381
>gi|255019824|ref|ZP_05291900.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
51756]
gi|340783198|ref|YP_004749805.1| DNA polymerase III subunit epsilon [Acidithiobacillus caldus SM-1]
gi|254970753|gb|EET28239.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus ATCC
51756]
gi|340557349|gb|AEK59103.1| DNA polymerase III epsilon subunit [Acidithiobacillus caldus SM-1]
Length = 243
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 89/242 (36%), Positives = 134/242 (55%), Gaps = 21/242 (8%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTG++ GHR+IEIG VE+ +R+IT Y+NPGR S+ AL +HG+
Sbjct: 2 RQVVLDTETTGIDPRQGHRVIEIGAVELVDREITEGRYQQYLNPGRSSDPEALRVHGIRD 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL ++ F++IV++FL ++ ++E+IIHNA FD+ FL+ EL +G + DTL
Sbjct: 62 DFLADQPDFADIVEDFLAFLGDAELIIHNAPFDLAFLNAELERVGRPALQNP---VRDTL 118
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK--- 179
+ AR+ H G++N LDALC RY + R HG LLD E+LAEVYL M+ GQ +
Sbjct: 119 VEARRRHPGQKNDLDALCRRYGVDNSRRQQHGALLDCEILAEVYLRMSGGQLGMRLAADR 178
Query: 180 ----PKINNSNNIETKIKIPNNIP-------IKLANSNELVQHNMILSKIDKHSNGRCIW 228
P + + ++ A++ EL H L + G+ +W
Sbjct: 179 EAQGPSVAEEGQAGAPFQAHAQAADRRRPLRLRRADAAELAAHEAYLRGL----GGKALW 234
Query: 229 KK 230
++
Sbjct: 235 RE 236
>gi|381197708|ref|ZP_09905048.1| bifunctional protein dnaQ [Acinetobacter lwoffii WJ10621]
Length = 474
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 120/179 (67%), Gaps = 8/179 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGR---DSEKSALAIHG 59
R ++LD ETTG DG RIIE+G +E+ NR++TG+++H YINP + DSE +HG
Sbjct: 247 RQLILDTETTGFYYQDGDRIIEVGAIEMVNRKLTGSSIHIYINPKKPVGDSEN----VHG 302
Query: 60 LTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRIT 119
++ FLK+K + EI D Y+ +EII HNA+FD+ FLDME G+ ++ + +T
Sbjct: 303 ISDDFLKDKPLYQEIADTLFAYLKGAEIIAHNASFDMNFLDMEFKRAGFVALSE-VCAVT 361
Query: 120 DTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL MA+ H G++NSLDAL RY I + RT HG LLDAE+LA+VYLAMT GQ + +
Sbjct: 362 DTLAMAKSKHPGQKNSLDALVRRYEIPQRDRTFHGALLDAEILADVYLAMTGGQVSFDM 420
>gi|328541691|ref|YP_004301800.1| DNA polymerase III subunit epsilon [Polymorphum gilvum SL003B-26A1]
gi|326411443|gb|ADZ68506.1| DNA polymerase III, epsilon subunit [Polymorphum gilvum
SL003B-26A1]
Length = 240
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 96/241 (39%), Positives = 135/241 (56%), Gaps = 19/241 (7%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I D ETTGL+ +G R++EIG VE+ N TGN H YINP RD ++A +HGL+
Sbjct: 2 REIAFDTETTGLDPRNGDRLVEIGGVELFNHVPTGNTYHVYINPERDMPEAAFNVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+EIVD FL +V ++ ++IHNAAFD+GF++MELS G + ++ DTL
Sbjct: 62 EFLADKPVFAEIVDEFLAFVGDARLVIHNAAFDMGFINMELSRAGRLPIPR--TQVLDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ--------- 173
+AR+ H NSLDALC RY I RT HG LLD+ELLAEVYL + G+
Sbjct: 120 ELARRKHPMGPNSLDALCGRYGIDNSRRTRHGALLDSELLAEVYLELIGGRQTALGLVLQ 179
Query: 174 ---SNLNFKPKINNSNNIETKIKIPNNIPI-KLANSNELVQHNMILSKIDKHSNGRCIWK 229
S ++ + S + + P +P+ E H ++ + + IW
Sbjct: 180 EEVSGRSYGGQSEGSGPAQVRSAPPRPVPLASWLTEEEKAAHATFVAGMGE----TAIWS 235
Query: 230 K 230
K
Sbjct: 236 K 236
>gi|383640132|ref|ZP_09952538.1| DNA polymerase III, epsilon subunit [Sphingomonas elodea ATCC
31461]
Length = 236
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 93/224 (41%), Positives = 135/224 (60%), Gaps = 10/224 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IV D ETTGL+ G R++EIGCVE+ NR TGN+ H YINP R A +HGL+
Sbjct: 2 REIVFDTETTGLSFSGGDRLVEIGCVELVNRVATGNHFHAYINPQRGMPVEAFNVHGLSE 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F ++V++ L ++ +S ++ HNA FD GFL+ EL S + R+ DTL
Sbjct: 62 RFLSDKPLFEDVVEDLLAFIGDSPMVAHNAGFDFGFLNGELGRC--SRPPVDLSRMVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
++AR H G +++LDALC RY I RTLHG LLDA+LLA+VY+ +T G Q L +
Sbjct: 120 VLARTKHPGAKHTLDALCSRYGIDLSARTLHGALLDAQLLAQVYVELTGGRQITLGLAEE 179
Query: 182 INNSNNIETKIKIPNNIPIKL-----ANSNELVQHNMILSKIDK 220
+ ET ++ P + ++ A++ EL +H L +D+
Sbjct: 180 VPVMP--ETVVEAPTRVHVRAARRFTASAAELERHAAFLKSLDE 221
>gi|209966072|ref|YP_002298987.1| DNA polymerase III subunit epsilon [Rhodospirillum centenum SW]
gi|209959538|gb|ACJ00175.1| DNA polymerase III, epsilon subunit [Rhodospirillum centenum SW]
Length = 227
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 116/179 (64%), Gaps = 3/179 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG++ ++G R++EIGCVE+ N TG H YINP RD A +HGL+T
Sbjct: 2 REIVLDTETTGIDALNGDRVVEIGCVELMNHVATGRTYHQYINPERDMPIEAFNVHGLST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL + F+EIV FL+++ +S ++IHNA FDVGFL+ EL+ LG R DT+
Sbjct: 62 EFLSGQPTFAEIVGPFLDFIQDSPLVIHNATFDVGFLNAELTRLGMRTLPA--ARAIDTV 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKP 180
++AR+ G SLDALC R+ I R+ HG LLDA+LLAEVYL + G Q +L P
Sbjct: 120 VLARRRFPGAPASLDALCRRFEIDNSARSYHGALLDAQLLAEVYLELLGGRQPDLVLAP 178
>gi|85375423|ref|YP_459485.1| DNA polymerase III subunit epsilon [Erythrobacter litoralis
HTCC2594]
gi|84788506|gb|ABC64688.1| DNA polymerase III epsilon subunit [Erythrobacter litoralis
HTCC2594]
Length = 229
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/225 (40%), Positives = 129/225 (57%), Gaps = 11/225 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IV D ETTGL+ G R++EIGCVE+ NR TG H Y NP RD +A +HGL+
Sbjct: 2 REIVFDTETTGLDPKTGDRMVEIGCVELMNRVPTGETFHAYYNPERDMPPAAEEVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K F + D L ++ ++ ++ HNA FD GFL+ EL L+ + + R+ DT+
Sbjct: 62 AFLSDKPLFRDTADALLEFLGDAPLVAHNAGFDFGFLNTELELIEREAIS--LDRMVDTV 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
+ARK H G + SLDALC RY + + HR HG LLDAELLA+VY+ + G Q L P+
Sbjct: 120 QIARKKHPGAKVSLDALCSRYGVDRSHRVKHGALLDAELLAQVYVELLGGRQIGLGLDPE 179
Query: 182 INNSNNIETKIKIPNNIPIKL-------ANSNELVQHNMILSKID 219
+++ E K P + A++ EL +H + L I+
Sbjct: 180 AADTDPSEAAWK-PETVARAFRTPRPHAASAEELARHKVFLEGIE 223
>gi|381167649|ref|ZP_09876856.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Phaeospirillum molischianum DSM
120]
gi|380683403|emb|CCG41668.1| DNA polymerase III: epsilon subunit, 3-5 exonucleolytic
proofreading function [Phaeospirillum molischianum DSM
120]
Length = 229
Score = 178 bits (452), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/172 (48%), Positives = 116/172 (67%), Gaps = 2/172 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG + + GHR++EIGCVE+ N TG H Y+NP RD + A +HGL+
Sbjct: 2 REIVLDTETTGFDPLSGHRLVEIGCVELVNHLPTGEVFHRYVNPERDMPEEAFKVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K FS++VD FL+++++S ++IHNA FD+ F++ EL+ +G T + R DT+
Sbjct: 62 AFLSDKPLFSDVVDAFLDFIADSTLVIHNAEFDMRFINAELARIGRP--TLPMARSLDTV 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
MARK G + +LDALC R+ I HRT HG LLD+ELLAEVYL + G+
Sbjct: 120 AMARKRFPGAQANLDALCRRFGIDNTHRTQHGALLDSELLAEVYLQLIGGRQ 171
>gi|296444995|ref|ZP_06886956.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
OB3b]
gi|296257416|gb|EFH04482.1| DNA polymerase III, epsilon subunit [Methylosinus trichosporium
OB3b]
Length = 242
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 131/232 (56%), Gaps = 11/232 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IV D ETTGL+ GHRI+EIG VEI N TG H+Y++P RD + A +HGL+T
Sbjct: 2 REIVFDTETTGLDPAKGHRIVEIGAVEISNLIPTGRTFHFYLDPERDMPEEAFRVHGLST 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL + KF EI + FL +V++++++ HNA FD+ F++ EL++LG R+ DTL
Sbjct: 62 AFLTGQKKFREIAEAFLEFVADAQLVAHNAEFDMRFVNAELAMLGLEAIAA--DRVVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
+AR++H G NSLDALC RY + R HG LLD+ LLAEVY + G QS L +
Sbjct: 120 TIARRLHPGAANSLDALCQRYGVDSSRRDKHGALLDSYLLAEVYAELMGGRQSALVLQTS 179
Query: 182 INNSNNIETKIKIPNNIPIKLAN---SNELVQHNMILSKIDKHSNGRCIWKK 230
+ + + + + P LA E+ H + + K IW +
Sbjct: 180 VAAAAQ-DLGADLLRSRPAPLAPRLAEEEIAAHERFAATLGKAP----IWSR 226
>gi|144899676|emb|CAM76540.1| DNA polymerase III, epsilon subunit [Magnetospirillum
gryphiswaldense MSR-1]
Length = 228
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 116/172 (67%), Gaps = 2/172 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG + + GHRI+EIGCVE+ N TG H Y+NP RD + A +HGL+
Sbjct: 2 REIVLDTETTGFDPLTGHRIVEIGCVELFNHLPTGKVYHQYVNPERDMPEEAFKVHGLSE 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+EIV +F++++ ++ ++IHNA FD+ F++ ELS LG+ + R DT+
Sbjct: 62 QFLSDKPVFAEIVADFMDFIGDAILVIHNAEFDMRFINAELSRLGFQPLP--MSRSIDTV 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
MARK G + +LDALC R+ I HR+ HG LLD+ELLAEVYL + G+
Sbjct: 120 AMARKKFPGAQANLDALCRRFEIDNTHRSFHGALLDSELLAEVYLQLIGGRQ 171
>gi|46201693|ref|ZP_00054536.2| COG0847: DNA polymerase III, epsilon subunit and related 3'-5'
exonucleases [Magnetospirillum magnetotacticum MS-1]
Length = 230
Score = 178 bits (451), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 83/172 (48%), Positives = 115/172 (66%), Gaps = 2/172 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTG + + GHR++EIGCVE+ N TG H Y NP RD + A +HGL+
Sbjct: 2 REIVLDTETTGFDPLSGHRLVEIGCVELFNHLPTGEVFHRYCNPERDMPEEAFKVHGLSV 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+EIV +FL ++ ++ ++IHNA FD+ F++ EL+ LG+ + R DT+
Sbjct: 62 EFLSDKPLFAEIVADFLEFIGDAPLVIHNAEFDMRFINAELARLGFPALP--MSRSIDTV 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQS 174
+MARK G + +LDALC R+ I HRT HG LLD+ELLAEVYL + G+
Sbjct: 120 MMARKKFPGAQANLDALCRRFEIDNTHRTKHGALLDSELLAEVYLQLIGGRQ 171
>gi|75674304|ref|YP_316725.1| DNA polymerase III subunit epsilon [Nitrobacter winogradskyi
Nb-255]
gi|74419174|gb|ABA03373.1| DNA polymerase III, epsilon subunit [Nitrobacter winogradskyi
Nb-255]
Length = 239
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 84/165 (50%), Positives = 111/165 (67%), Gaps = 2/165 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVE+ NR TG H YINP RD + A A+HGL++
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEMFNRMPTGQTFHRYINPERDMPQEAFAVHGLSS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K F+ +VD FL ++ ++ ++IHNA+FD+ F++ EL L + R+ DTL
Sbjct: 62 DFLADKPLFAHVVDEFLEFIGDAPLVIHNASFDISFINAELDRLKRQAIGR--DRLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYL 167
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYAIDNSRRTKHGALLDAELLAEVYI 164
>gi|400286595|ref|ZP_10788627.1| DNA polymerase III subunit epsilon [Psychrobacter sp. PAMC 21119]
gi|400288072|ref|ZP_10790104.1| DNA polymerase III subunit epsilon [Psychrobacter sp. PAMC 21119]
Length = 533
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 78/174 (44%), Positives = 122/174 (70%), Gaps = 1/174 (0%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +++D ETTGL+ + G RI+E+G VE+ R+ TG LH YINP R ++ + IHG++
Sbjct: 308 RQLIMDTETTGLDALKGDRIVEVGIVEMVGRKFTGEKLHVYINPQRGMDEEVIRIHGISE 367
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K F ++ + +++ +EII HNA FD+ FL+ME + +G ++F + + ++TD+L
Sbjct: 368 AFLADKPTFDQVAQSLYDFMDGAEIIAHNATFDMNFLNMEFAKVGMNDFAQRV-KVTDSL 426
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
+MA++ + G++N+LDAL R ++ K RT HG LLD+E+LAEVYLAMT GQ L
Sbjct: 427 VMAKQQYPGQKNTLDALVRRLDVGKQDRTFHGALLDSEILAEVYLAMTGGQVTL 480
>gi|15604567|ref|NP_221085.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
Madrid E]
gi|383486714|ref|YP_005404394.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
GvV257]
gi|383488128|ref|YP_005405807.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
Chernikova]
gi|383488973|ref|YP_005406651.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
Katsinyian]
gi|383489812|ref|YP_005407489.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
Dachau]
gi|383499952|ref|YP_005413313.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
BuV67-CWPP]
gi|383500786|ref|YP_005414146.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
RpGvF24]
gi|386082608|ref|YP_005999187.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
Rp22]
gi|6685391|sp|Q9ZCJ9.1|DPO3E_RICPR RecName: Full=DNA polymerase III subunit epsilon
gi|3861262|emb|CAA15161.1| DNA POLYMERASE III, EPSILON CHAIN (dnaQ) [Rickettsia prowazekii
str. Madrid E]
gi|292572374|gb|ADE30289.1| DNA polymerase III epsilon chain [Rickettsia prowazekii str. Rp22]
gi|380757079|gb|AFE52316.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
GvV257]
gi|380758483|gb|AFE53719.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
RpGvF24]
gi|380761007|gb|AFE49529.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
Chernikova]
gi|380761852|gb|AFE50373.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
Katsinyian]
gi|380762698|gb|AFE51218.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
BuV67-CWPP]
gi|380763535|gb|AFE52054.1| DNA polymerase III subunit epsilon [Rickettsia prowazekii str.
Dachau]
Length = 229
Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 137/223 (61%), Gaps = 9/223 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ GHRI+EIG +E+ N+ +TG + H+YINP RD A IHG++
Sbjct: 5 REIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGKHFHFYINPERDMPFEAYKIHGISG 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--IYRITD 120
+FLK+K F I ++FL ++++S +IIHNA FD+ FL+ ELSLL + K+ + D
Sbjct: 65 EFLKDKPLFKTIANDFLKFIADSTLIIHNAPFDIKFLNHELSLLKRTEI-KFLELTNTID 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFK 179
TL+MAR + G R SLDALC R+ + R LHG L DA LLAEVY+A+T G QS
Sbjct: 124 TLVMARNMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALTGGRQSTFKMI 183
Query: 180 PKINNSNNIETKI----KIPNNIPIKLANSNELVQHNMILSKI 218
K + NN+ K +I I +K EL +H + KI
Sbjct: 184 NKPDEINNLAVKCVDVQQIKRGIVVK-PTKEELQKHKEFIDKI 225
>gi|298293766|ref|YP_003695705.1| DNA polymerase III subunit epsilon [Starkeya novella DSM 506]
gi|296930277|gb|ADH91086.1| DNA polymerase III, epsilon subunit [Starkeya novella DSM 506]
Length = 232
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 132/231 (57%), Gaps = 10/231 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGLN + G R++EIGCVEI NR TG H Y+NP RD A +HGL+
Sbjct: 2 REIVLDTETTGLNPLTGDRLVEIGCVEIFNRIPTGQTFHVYLNPERDMPLEAFNVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL +K F+ +VD+FL +++ ++IHNAAFD+GF++ EL+ L T R+ DTL
Sbjct: 62 EFLSDKPLFAAVVDDFLAFIAGDPLVIHNAAFDIGFINAELARLARPALT--FDRVVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKPK 181
+AR+ H G N LD L +RY I RT HG LLD+ELLA+VY + G Q+ L
Sbjct: 120 SLARRRHPGASNRLDDLMNRYGIDGSRRTKHGALLDSELLADVYAELCGGRQTALGLTVV 179
Query: 182 INNSNNIETKIKIPNNIPIKLA---NSNELVQHNMILSKIDKHSNGRCIWK 229
E + P P LA ++ ++ H ++ + + IWK
Sbjct: 180 ETTVVLAERQSAAPLQRPRPLAPRLDAAQVATHEAFVATLGDSA----IWK 226
>gi|383768471|ref|YP_005447534.1| DNA polymerase III subunit epsilon [Bradyrhizobium sp. S23321]
gi|381356592|dbj|BAL73422.1| DNA polymerase III epsilon chain [Bradyrhizobium sp. S23321]
Length = 238
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 87/175 (49%), Positives = 114/175 (65%), Gaps = 3/175 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVE+ NR TG H YINP RD A A+HGL+
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEMLNRMPTGQTYHVYINPERDMPAEAFAVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL K F E+VD FL ++ ++ ++IHNA+FD+ F++ EL + + + R+ DTL
Sbjct: 62 EFLSTKPLFHEVVDAFLEFIGDAPLVIHNASFDISFINAELDRIKRAAIPR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL 176
L+AR+ H G N LD LC RY I RT HG LLDAELLAEVY+ + QS L
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYLIDNSRRTKHGALLDAELLAEVYVDLVGARQSQL 174
>gi|294085203|ref|YP_003551963.1| DNA polymerase III subunit epsilon [Candidatus Puniceispirillum
marinum IMCC1322]
gi|292664778|gb|ADE39879.1| DNA polymerase III, epsilon subunit and related 3'-5' exonuclease
[Candidatus Puniceispirillum marinum IMCC1322]
Length = 255
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/171 (50%), Positives = 118/171 (69%), Gaps = 2/171 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I LD ETTG+N DGHRIIEIGC+E+ + TGN LH YINP R+ ++ A+ +HGLT+
Sbjct: 2 REIALDTETTGINPRDGHRIIEIGCLELLHHLPTGNKLHIYINPEREIDEGAVKVHGLTS 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
FL +K F++IVD FL ++ +++IHNA+FD+GFL+ EL+ L + R DTL
Sbjct: 62 AFLADKPLFADIVDEFLAFIGGDQMVIHNASFDMGFLNAELARLDRPVLP--MDRAVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQ 173
+MARK G + +LDALC R+ I HR LHG L+DA+LLA VY+ + G+
Sbjct: 120 MMARKKFPGAQANLDALCRRFEIDNGHRDLHGALIDADLLASVYIELLGGK 170
>gi|398821399|ref|ZP_10579863.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. YR681]
gi|398227927|gb|EJN14085.1| DNA polymerase III, epsilon subunit [Bradyrhizobium sp. YR681]
Length = 238
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/175 (49%), Positives = 114/175 (65%), Gaps = 3/175 (1%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R IVLD ETTGL+ + G R++EIGCVE+ NR TG H YINP RD A A+HGL+
Sbjct: 2 REIVLDTETTGLDPLRGDRLVEIGCVEMLNRMPTGQTYHVYINPERDMPAEAFAVHGLSA 61
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL K F E+V+ FL ++ + ++IHNA+FD+ F++ EL + + + R+ DTL
Sbjct: 62 EFLSTKPLFHEVVEAFLEFIGEAPLVIHNASFDISFINAELDRIKRAAIPR--ERLVDTL 119
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNL 176
L+AR+ H G N LD LC RY+I RT HG LLDAELLAEVY+ + QS L
Sbjct: 120 LLARRKHPGVSNRLDDLCSRYSIDNSRRTKHGALLDAELLAEVYVDLVGARQSQL 174
>gi|58696733|ref|ZP_00372277.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila simulans]
gi|58698126|ref|ZP_00373049.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila ananassae]
gi|225629990|ref|YP_002726781.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
gi|58535372|gb|EAL59448.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila ananassae]
gi|58537085|gb|EAL60207.1| DNA polymerase III, epsilon subunit [Wolbachia endosymbiont of
Drosophila simulans]
gi|225591971|gb|ACN94990.1| DNA polymerase III, epsilon subunit [Wolbachia sp. wRi]
Length = 231
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 102/230 (44%), Positives = 144/230 (62%), Gaps = 9/230 (3%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R +VLD ETTGL+ GHRIIEIGCVE+ NR TG H Y+NP RD + IHG++
Sbjct: 6 RELVLDTETTGLDTESGHRIIEIGCVELINRIPTGKVFHRYLNPERDIPYHSFKIHGISE 65
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+FL++K FS++ FL+++SN ++IHNA FDV FL+MELS L + R+ DTL
Sbjct: 66 EFLEDKPLFSDVALEFLDFISNDILVIHNAEFDVKFLNMELSKLNAGLISS--DRVLDTL 123
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
+ARK G SL+ALC R++IS +R LHG L+DA+LLA+VY+ +T G F +
Sbjct: 124 PLARKKFAGSPASLNALCKRFDISLENRELHGALVDAQLLAKVYVELTGGLQTFLFDNEC 183
Query: 183 N-NSNNIETKIKIPNNIPIKLA-NSNELVQHNMILSKIDKHSNGRCIWKK 230
N +SN+ + K+ N P + + NS E+ +H +L KI+ +W K
Sbjct: 184 NQDSNSTFVQHKVRNLTPREHSPNSEEIDEHKKLLDKINN-----TLWNK 228
>gi|424042736|ref|ZP_17780411.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HENC-02]
gi|408887447|gb|EKM26036.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HENC-02]
Length = 209
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 113/161 (70%), Gaps = 1/161 (0%)
Query: 19 GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNF 78
GHRIIEIG VEI NR++TG + H Y+ P RD + A+ +HG+T +FL +K ++ + F
Sbjct: 2 GHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQPDAIEVHGITDEFLVDKPDYANVHQEF 61
Query: 79 LNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDTLLMARKIHTGKRNSLD 137
L+++ +E++ HNA FD GF+D E +L + T ++TDTL MA+KI GKRN+LD
Sbjct: 62 LDFIKGAELVAHNAPFDTGFMDYEFEMLDPTIGKTDDFCKVTDTLAMAKKIFPGKRNNLD 121
Query: 138 ALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L F
Sbjct: 122 VLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLEF 162
>gi|424033745|ref|ZP_17773156.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HENC-01]
gi|408873858|gb|EKM13041.1| DNA polymerase III, epsilon subunit [Vibrio cholerae HENC-01]
Length = 209
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 82/161 (50%), Positives = 113/161 (70%), Gaps = 1/161 (0%)
Query: 19 GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKFLKNKLKFSEIVDNF 78
GHRIIEIG VEI NR++TG + H Y+ P RD + A+ +HG+T +FL +K ++ + F
Sbjct: 2 GHRIIEIGAVEIINRKLTGRHFHVYLKPDRDIQPDAIEVHGITDEFLVDKPDYANVHQEF 61
Query: 79 LNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYRITDTLLMARKIHTGKRNSLD 137
L+++ +E++ HNA FD GF+D E +L + T ++TDTL MA+KI GKRN+LD
Sbjct: 62 LDFIKGAELVAHNAPFDTGFMDYEFEMLDPTIGKTDDFCKVTDTLAMAKKIFPGKRNNLD 121
Query: 138 ALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
LC+RY I HRTLHG LLDAE+LA+VYL MT GQ++L F
Sbjct: 122 VLCERYGIDNSHRTLHGALLDAEILADVYLLMTGGQTSLEF 162
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,393,882,296
Number of Sequences: 23463169
Number of extensions: 131745650
Number of successful extensions: 367989
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 3679
Number of HSP's successfully gapped in prelim test: 3976
Number of HSP's that attempted gapping in prelim test: 358188
Number of HSP's gapped (non-prelim): 7786
length of query: 230
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 92
effective length of database: 9,121,278,045
effective search space: 839157580140
effective search space used: 839157580140
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)