BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14503
(230 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P03007|DPO3E_ECOLI DNA polymerase III subunit epsilon OS=Escherichia coli (strain K12)
GN=dnaQ PE=1 SV=1
Length = 243
Score = 216 bits (550), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 149/237 (62%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVVNRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+E+ D F++Y+ +E++IHNAAFD+GF+D E SLL T +
Sbjct: 67 GIADEFLLDKPTFAEVADEFMDYIRGAELVIHNAAFDIGFMDYEFSLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLAVARKMFPGKRNSLDALCARYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMA 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A E+ H L + K G C+W+
Sbjct: 187 FAMEGETQQQQGEATIQRIVRQASKLRVVFATDEEIAAHEARLDLVQK-KGGSCLWR 242
>sp|P0A1G9|DPO3E_SALTY DNA polymerase III subunit epsilon OS=Salmonella typhimurium
(strain LT2 / SGSC1412 / ATCC 700720) GN=dnaQ PE=3 SV=1
Length = 243
Score = 215 bits (547), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 67 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 187 FAMEGETQRQQGEATIQRIVRQASRLRVVFASEEELAAHESRLDLVQK-KGGSCLWR 242
>sp|P0A1H0|DPO3E_SALTI DNA polymerase III subunit epsilon OS=Salmonella typhi GN=dnaQ PE=3
SV=1
Length = 243
Score = 215 bits (547), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 106/237 (44%), Positives = 150/237 (63%), Gaps = 11/237 (4%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N I +GH+IIEIG VE+ NR++TGNN H Y+ P R + A +H
Sbjct: 7 RQIVLDTETTGMNQIGAHYEGHKIIEIGAVEVINRRLTGNNFHVYLKPDRLVDPEAFGVH 66
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYS-NFTKYIYR 117
G+ +FL +K F+++VD FL+Y+ +E++IHNA+FD+GF+D E LL T +
Sbjct: 67 GIADEFLLDKPVFADVVDEFLDYIRGAELVIHNASFDIGFMDYEFGLLKRDIPKTNTFCK 126
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+TD+L +ARK+ GKRNSLDALC RY I RTLHG LLDA++LAEVYLAMT GQ+++
Sbjct: 127 VTDSLALARKMFPGKRNSLDALCSRYEIDNSKRTLHGALLDAQILAEVYLAMTGGQTSMT 186
Query: 178 FK-----PKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWK 229
F + I+ ++ + + + A+ EL H L + K G C+W+
Sbjct: 187 FAMEGETQRQQGEATIQRIVRQASRLRVVFASEEELAAHESRLDLVQK-KGGSCLWR 242
>sp|Q9CPE0|DPO3E_PASMU DNA polymerase III subunit epsilon OS=Pasteurella multocida (strain
Pm70) GN=dnaQ PE=3 SV=1
Length = 253
Score = 210 bits (534), Expect = 8e-54, Method: Compositional matrix adjust.
Identities = 109/237 (45%), Positives = 151/237 (63%), Gaps = 9/237 (3%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N +GH IIEIG VE+ NR++TGNN H YI P R + A+ +H
Sbjct: 9 RQIVLDTETTGMNQFGAHYEGHCIIEIGAVEMINRRLTGNNFHIYIKPNRPVDPDAIKVH 68
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K F+E+ F++Y+ +E++IHNA FDVGF+D E L + T I +
Sbjct: 69 GITDEMLADKPMFNEVAQQFIDYIQGAELLIHNAPFDVGFMDYEFKKLNLNINTDAICMV 128
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL-- 176
TDTL MAR+++ GKRNSLDALCDR I RTLHG LLDAE+LA+VYL MT GQ++L
Sbjct: 129 TDTLQMARQMYPGKRNSLDALCDRLGIDNSKRTLHGALLDAEILADVYLTMTGGQTSLFD 188
Query: 177 NFKPKI---NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCIWKK 230
+P+I I++ + ++ N++EL H L ++K S G C+W+K
Sbjct: 189 ENEPEIAVVAVQEQIQSAVAFSQDLKRLQPNADELQAHLDYLLLLNKKSKGNCLWEK 245
>sp|P43745|DPO3E_HAEIN DNA polymerase III subunit epsilon OS=Haemophilus influenzae
(strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=dnaQ PE=3
SV=1
Length = 256
Score = 204 bits (519), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 107/243 (44%), Positives = 151/243 (62%), Gaps = 15/243 (6%)
Query: 3 RHIVLDIETTGLNII----DGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLD ETTG+N + +GH IIEIG VE+ NR+ TGNN H YI P R + A+ +H
Sbjct: 6 RQIVLDTETTGMNQLGAHYEGHCIIEIGAVELINRRYTGNNXHIYIKPDRPXDPDAIKVH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T + L +K +F E+ +FL+Y++ +E++IHNA FDVGF+D E L + T I +
Sbjct: 66 GITDEMLADKPEFKEVAQDFLDYINGAELLIHNAPFDVGFMDYEFRKLNLNVKTDDICLV 125
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
TDTL MAR+++ GKRN+LDALCDR I RTLHG LLDAE+LA+VYL MT GQ+NL
Sbjct: 126 TDTLQMARQMYPGKRNNLDALCDRLGIDNSKRTLHGALLDAEILADVYLMMTGGQTNLFD 185
Query: 179 KPKI-----------NNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHSNGRCI 227
+ + + I++ + +N+ + ++EL H L ++K S C+
Sbjct: 186 EEESVESGVIRVMQEKTAEEIKSAVDFSHNLKLLQPTNDELQAHLEFLKMMNKKSGNNCL 245
Query: 228 WKK 230
W K
Sbjct: 246 WDK 248
>sp|Q89AN3|DPO3E_BUCBP DNA polymerase III subunit epsilon OS=Buchnera aphidicola subsp.
Baizongia pistaciae (strain Bp) GN=dnaQ PE=3 SV=1
Length = 245
Score = 194 bits (493), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 107/235 (45%), Positives = 146/235 (62%), Gaps = 10/235 (4%)
Query: 3 RHIVLDIETTGLN----IIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R IVLDIETTG+N H+IIEIG VE+ N TGNN H YI P R +K + IH
Sbjct: 6 RKIVLDIETTGMNPAGCFYKNHKIIEIGAVEMINNVFTGNNFHSYIQPNRLIDKQSFKIH 65
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIY-R 117
G+T FL +K KF EI FL Y++NS++IIHNA FDVGF++ EL+++ Y
Sbjct: 66 GITDNFLLDKPKFHEISVKFLEYITNSDLIIHNAKFDVGFINYELNMINSDKRKISDYCN 125
Query: 118 ITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLN 177
+ DTL +AR++ GK+NSLDALC+RY I+ HR H L+DA+LLA+VY MT Q +++
Sbjct: 126 VVDTLPLARQLFPGKKNSLDALCNRYKINVSHRDFHSALIDAKLLAKVYTFMTSFQQSIS 185
Query: 178 FKPKINNSNNIETKIKIPNNIPIK----LANSNELVQHNMILSKIDKHSNGRCIW 228
K +N N+I+ K+ + +P + LA +EL QH L + K G C+W
Sbjct: 186 IFDKNSNLNSIQKNAKLDSRVPFRSTLLLATKDELQQHMKYLKYV-KQETGNCVW 239
>sp|P57337|DPO3E_BUCAI DNA polymerase III subunit epsilon OS=Buchnera aphidicola subsp.
Acyrthosiphon pisum (strain APS) GN=dnaQ PE=3 SV=1
Length = 237
Score = 183 bits (465), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 100/203 (49%), Positives = 130/203 (64%), Gaps = 7/203 (3%)
Query: 3 RHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIH 58
R I+LD ETTG+N HRIIEIG VEI +R TGNN H YI PGR E AL +H
Sbjct: 5 RTIILDTETTGINQTSLPHINHRIIEIGAVEIIDRCFTGNNFHVYIQPGRSIESGALKVH 64
Query: 59 GLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRI 118
G+T KFL +K F +I D+FLNY+ NS ++IHNA+FDVGF++ EL +L I
Sbjct: 65 GITNKFLLDKPIFKDIADSFLNYIKNSILVIHNASFDVGFINQELEILNKKIKINTFCSI 124
Query: 119 TDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNF 178
DTL +AR++ GK+N+LDALC RY I+K HR LH ++D+ LL ++YL MT GQ +L
Sbjct: 125 IDTLKIARELFPGKKNTLDALCTRYKINKSHRNLHSAIVDSYLLGKLYLLMTGGQDSLFS 184
Query: 179 KPKINNSNNIETKIKIPNNIPIK 201
IN N + K+ NI +K
Sbjct: 185 DNTINYKENFK---KLKKNIQLK 204
>sp|Q1RJM1|DPO3E_RICBR DNA polymerase III subunit epsilon OS=Rickettsia bellii (strain
RML369-C) GN=dnaQ PE=3 SV=1
Length = 229
Score = 182 bits (462), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 97/225 (43%), Positives = 139/225 (61%), Gaps = 5/225 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ GHRI+EIG +E+ N+ +TG + H+Y+NP RD A IHG++
Sbjct: 5 REIILDTETTGLDPKGGHRIVEIGAIEMVNKVLTGRHFHFYLNPERDMPFEAYRIHGISG 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY-IYRITDT 121
+FLK+K F I D+FL ++++S+++IHNA FDV FL+ ELSLL + + DT
Sbjct: 65 EFLKDKPLFHTIADDFLEFIADSKLVIHNAPFDVKFLNHELSLLKRAEIKLLELEHAIDT 124
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSN----LN 177
L+MAR + G + SLDALC R+ + R LHG L DA LLAEVY+ +T G+ + L+
Sbjct: 125 LVMARSMFPGSKYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTGGRQSAFKMLD 184
Query: 178 FKPKINNSNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDKHS 222
KINN + + NIP+ EL +H LS++ K +
Sbjct: 185 KAAKINNLSYNRLDSQAHRNIPVIKPTKEELQKHKEFLSRVLKQA 229
>sp|Q68W16|DPO3E_RICTY DNA polymerase III subunit epsilon OS=Rickettsia typhi (strain ATCC
VR-144 / Wilmington) GN=dnaQ PE=3 SV=1
Length = 229
Score = 179 bits (454), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 103/223 (46%), Positives = 137/223 (61%), Gaps = 9/223 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ GHRIIEIG +E+ N+ +TG + H YINP RD A IHG++
Sbjct: 5 REIILDTETTGLDPQQGHRIIEIGAIEMVNKVLTGKHFHCYINPERDMPFEAYKIHGISG 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--IYRITD 120
+FLK+K F I ++FL ++++S +IIHNA FD+ FL+ ELSLL + K+ + D
Sbjct: 65 EFLKDKPLFHTIANDFLKFIADSTLIIHNAPFDIKFLNHELSLLKRTEI-KFLELTNTID 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFK 179
TL+MAR + G R SLDALC R+ + R LHG L DA LLAEVY+A+T G QS
Sbjct: 124 TLVMARSMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALTGGRQSTFKMI 183
Query: 180 PKINNSNNIETKI----KIPNNIPIKLANSNELVQHNMILSKI 218
K N NN+ K KI +I +K EL +H + KI
Sbjct: 184 DKPNEINNLTVKCIEVQKIKRSIVVK-PTKEELQKHKEFIDKI 225
>sp|Q9ZCJ9|DPO3E_RICPR DNA polymerase III subunit epsilon OS=Rickettsia prowazekii (strain
Madrid E) GN=dnaQ PE=3 SV=1
Length = 229
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 100/223 (44%), Positives = 137/223 (61%), Gaps = 9/223 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ GHRI+EIG +E+ N+ +TG + H+YINP RD A IHG++
Sbjct: 5 REIILDTETTGLDPQQGHRIVEIGAIEMVNKVLTGKHFHFYINPERDMPFEAYKIHGISG 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY--IYRITD 120
+FLK+K F I ++FL ++++S +IIHNA FD+ FL+ ELSLL + K+ + D
Sbjct: 65 EFLKDKPLFKTIANDFLKFIADSTLIIHNAPFDIKFLNHELSLLKRTEI-KFLELTNTID 123
Query: 121 TLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFK 179
TL+MAR + G R SLDALC R+ + R LHG L DA LLAEVY+A+T G QS
Sbjct: 124 TLVMARNMFPGARYSLDALCKRFKVDNSGRQLHGALKDAALLAEVYVALTGGRQSTFKMI 183
Query: 180 PKINNSNNIETKI----KIPNNIPIKLANSNELVQHNMILSKI 218
K + NN+ K +I I +K EL +H + KI
Sbjct: 184 NKPDEINNLAVKCVDVQQIKRGIVVK-PTKEELQKHKEFIDKI 225
>sp|Q4UN31|DPO3E_RICFE DNA polymerase III subunit epsilon OS=Rickettsia felis (strain ATCC
VR-1525 / URRWXCal2) GN=dnaQ PE=3 SV=1
Length = 229
Score = 176 bits (445), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 99/223 (44%), Positives = 133/223 (59%), Gaps = 5/223 (2%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ GHRI+EIG +E+ N+ +TG N H+YINP RD A IHG++
Sbjct: 5 REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFDAYRIHGISG 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY-IYRITDT 121
+FLK+K F I D+FL ++S+S++IIHNA FD+ FL+ ELSLL + + DT
Sbjct: 65 EFLKDKPLFHTIADDFLEFISDSKLIIHNAPFDIKFLNHELSLLKRAEIKLLELSNAIDT 124
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKP 180
L+MAR + G + +LDALC R+ + R LHG L DA LLAEVY+ +T G QS
Sbjct: 125 LVMARSMFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELTGGRQSAFKMVD 184
Query: 181 KINNSNNIETKI---KIPNNIPIKLANSNELVQHNMILSKIDK 220
K +NN+ T K + EL +H LS I K
Sbjct: 185 KSVETNNLATNQVNNKTEQATIVIKPTKEELQKHKEFLSSILK 227
>sp|Q92GL1|DPO3E_RICCN DNA polymerase III subunit epsilon OS=Rickettsia conorii (strain
ATCC VR-613 / Malish 7) GN=dnaQ PE=3 SV=1
Length = 230
Score = 174 bits (442), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 103/225 (45%), Positives = 138/225 (61%), Gaps = 9/225 (4%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
R I+LD ETTGL+ GHRI+EIG +E+ N+ +TG N H+YINP RD A IHG++
Sbjct: 5 REIILDTETTGLDPRQGHRIVEIGAIEMVNKVLTGRNFHFYINPERDMPFEAYRIHGISG 64
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKY-IYRITDT 121
+FLK+K F I D+FL ++S+S++IIHNA FD+ FL+ ELSLL ++ + DT
Sbjct: 65 EFLKDKPLFHTIADDFLEFISDSKLIIHNAPFDIKFLNHELSLLKRTDIKLLELANTIDT 124
Query: 122 LLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG-QSNLNFKP 180
L+MAR I G + +LDALC R+ + R LHG L DA LLAEVY+ + G QS
Sbjct: 125 LVMARSIFPGSKYNLDALCKRFKVDNSGRQLHGALKDAALLAEVYVELMGGRQSAFKMVD 184
Query: 181 K---INN--SNNIETKIKIPNNIPIKLANSNELVQHNMILSKIDK 220
K INN +N + K + I IK EL +H LS+I K
Sbjct: 185 KSAVINNLATNQVNNKTE-QTTIVIK-PTKEELQKHKEFLSRILK 227
>sp|Q08880|DPO3E_BUCAP DNA polymerase III subunit epsilon OS=Buchnera aphidicola subsp.
Schizaphis graminum (strain Sg) GN=dnaQ PE=3 SV=2
Length = 233
Score = 166 bits (421), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 108/227 (47%), Positives = 134/227 (59%), Gaps = 17/227 (7%)
Query: 2 HRHIVLDIETTGLNIID----GHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
R IVLD ETTG+N + HRIIEIG +EI NR+ TG H YI P R E A I
Sbjct: 5 QRIIVLDTETTGMNSVGPPYLNHRIIEIGAIEIINRRFTGKKFHTYIKPNRLIESDASKI 64
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLL-----GYSNFT 112
HG+T FL +K F +I +F NY+ NSE+IIHNA+FDVGF++ E S+L SNF
Sbjct: 65 HGITDDFLSDKPSFKDIAKDFFNYIKNSELIIHNASFDVGFINQEFSMLTKKIQDISNFC 124
Query: 113 KYIYRITDTLLMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG 172
I DTL +ARK+ GK+N+LDALC RY I HR LHG +LDA LL ++YL MT G
Sbjct: 125 ----NIIDTLKIARKLFPGKKNTLDALCMRYKIKNSHRVLHGAILDAFLLGKLYLLMTSG 180
Query: 173 QSNLNFKPKINNSNNI----ETKIKIPNNIPIKLANSNELVQHNMIL 215
Q ++ F I N N ++ K + I AN EL HN L
Sbjct: 181 QESIIFNKNIQNERNFRYIKKSITKKHRFLKIIKANKTELKLHNEYL 227
>sp|A5IJJ8|DPO3_THEP1 DNA polymerase III PolC-type OS=Thermotoga petrophila (strain RKU-1
/ ATCC BAA-488 / DSM 13995) GN=polC PE=3 SV=1
Length = 1367
Score = 85.9 bits (211), Expect = 2e-16, Method: Composition-based stats.
Identities = 58/165 (35%), Positives = 92/165 (55%), Gaps = 11/165 (6%)
Query: 5 IVLDIETTGLNI-IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
+VLD ETTGL+ +D IIEIG V+I++ QI + H I P R+ + + I G+T +
Sbjct: 359 VVLDFETTGLDPQVD--EIIEIGAVKIQDGQIV-DEYHTLIKPSREISRRSSEITGITQE 415
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMEL-SLLGYSNFTKYIYRITDTL 122
L+NK E++ FL ++ NS I+ HNA FD FL + + ++G YI DTL
Sbjct: 416 MLENKRSIEEVLPEFLGFLENSIIVAHNANFDYRFLRLWIKKVMGLDWERPYI----DTL 471
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYL 167
+A+ + + SLD++ ++ + H L DA + A+V+L
Sbjct: 472 ALAKSLLKMRSYSLDSVVEKLGLGPFRH--HRALDDARVTAQVFL 514
>sp|O68045|DPO3E_RHOCB DNA polymerase III subunit epsilon-like protein OS=Rhodobacter
capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003)
GN=dnaQ PE=3 SV=1
Length = 704
Score = 79.0 bits (193), Expect = 3e-14, Method: Composition-based stats.
Identities = 52/167 (31%), Positives = 82/167 (49%), Gaps = 6/167 (3%)
Query: 5 IVLDIETTGLNIIDGHRIIEIGCVEIKN-RQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
+V D ETTGL G I++I V I N R++ G +NPGR ++ A+HG+T
Sbjct: 511 VVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNPGRPIPAASTAVHGITEA 570
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
+ +E+ F + + ++ HNA FD+ FL + L+G NF + DT+L
Sbjct: 571 MVATAPAIAEVGRRFHKFAEGAVLVAHNAPFDLEFLRRKELLIG-KNFDN---PVLDTVL 626
Query: 124 MARKIH-TGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAM 169
++ + + +SLDAL R I+ H L D AE +L +
Sbjct: 627 LSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGDTVATAEAFLRL 673
>sp|Q8RA32|DPO3_THETN DNA polymerase III PolC-type OS=Thermoanaerobacter tengcongensis
(strain DSM 15242 / JCM 11007 / NBRC 100824 / MB4)
GN=polC PE=3 SV=1
Length = 1401
Score = 77.4 bits (189), Expect = 7e-14, Method: Composition-based stats.
Identities = 51/176 (28%), Positives = 89/176 (50%), Gaps = 9/176 (5%)
Query: 5 IVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKF 64
+V DIETTGL+ I+ IIEIG V+IKN++I + ++NP + G+
Sbjct: 389 VVFDIETTGLSNIN-DEIIEIGAVKIKNKKIV-DTFETFVNPQIPISSFITKLTGIDESM 446
Query: 65 LKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLM 124
+K+ E++ FL + + ++ HNA FDV F+ + LG + + DTL +
Sbjct: 447 VKDAPLIEEVLPKFLEFAKGAVLVAHNANFDVSFIKSKAKKLGLTVENT----VLDTLEL 502
Query: 125 ARKIHTGKRN-SLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFK 179
+R ++ +N LD L + + + +H H + DA+ AE+++ M + K
Sbjct: 503 SRHLYQDLKNYKLDTLAEFFEVKLLHH--HRAVEDAKATAEIFIKMLEKLQEIGIK 556
>sp|Q9ZHF6|DPO3_THEMA DNA polymerase III PolC-type OS=Thermotoga maritima (strain ATCC
43589 / MSB8 / DSM 3109 / JCM 10099) GN=polC PE=1 SV=1
Length = 1367
Score = 77.0 bits (188), Expect = 9e-14, Method: Composition-based stats.
Identities = 57/165 (34%), Positives = 91/165 (55%), Gaps = 11/165 (6%)
Query: 5 IVLDIETTGLNI-IDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
+VLD ETTGL+ +D IIEIG V+I+ QI + H I P R+ + + I G+T +
Sbjct: 359 VVLDFETTGLDPQVD--EIIEIGAVKIQGGQIV-DEYHTLIKPSREISRKSSEITGITQE 415
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMEL-SLLGYSNFTKYIYRITDTL 122
L+NK E++ FL ++ +S I+ HNA FD FL + + ++G YI DTL
Sbjct: 416 MLENKRSIEEVLPEFLGFLEDSIIVAHNANFDYRFLRLWIKKVMGLDWERPYI----DTL 471
Query: 123 LMARKIHTGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYL 167
+A+ + + SLD++ ++ + H L DA + A+V+L
Sbjct: 472 ALAKSLLKLRSYSLDSVVEKLGLGPFRH--HRALDDARVTAQVFL 514
>sp|Q9KA72|DPO3_BACHD DNA polymerase III PolC-type OS=Bacillus halodurans (strain ATCC
BAA-125 / DSM 18197 / FERM 7344 / JCM 9153 / C-125)
GN=polC PE=3 SV=1
Length = 1433
Score = 74.7 bits (182), Expect = 5e-13, Method: Composition-based stats.
Identities = 44/168 (26%), Positives = 90/168 (53%), Gaps = 8/168 (4%)
Query: 5 IVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKF 64
+V D+ETTGL+ + ++IIE+ V++KN +I + + +P + + + G+T
Sbjct: 420 VVFDVETTGLSAV-YNKIIELAAVKVKNGEII-DRFERFADPHEPLTNTIIELTGITDDM 477
Query: 65 LKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLM 124
LK + + ++++ F ++ ++ ++ HNA+FD+GFL+ +G + DTL +
Sbjct: 478 LKGQPEVEQVLNEFHAFIGDAVLVAHNASFDMGFLNTGFQKMGLGEAKN---PVIDTLEL 534
Query: 125 ARKIH-TGKRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTR 171
R ++ T K + L+ LC +++I + H + DAE + M +
Sbjct: 535 GRFLYPTLKNHRLNTLCKKFDIELVSH--HRAIYDAEATGHLLWRMVK 580
>sp|Q8CPG6|DPO3_STAES DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 12228) GN=polC PE=3 SV=1
Length = 1442
Score = 71.6 bits (174), Expect = 4e-12, Method: Composition-based stats.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 426 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 482
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 483 DMLTDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 539
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 540 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELG---- 593
Query: 182 INNSNNIETKI 192
+NN I K+
Sbjct: 594 VNNHLEINKKL 604
>sp|Q5HPS7|DPO3_STAEQ DNA polymerase III PolC-type OS=Staphylococcus epidermidis (strain
ATCC 35984 / RP62A) GN=polC PE=3 SV=2
Length = 1438
Score = 71.6 bits (174), Expect = 4e-12, Method: Composition-based stats.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 422 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 478
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 479 DMLTDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 535
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 536 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELG---- 589
Query: 182 INNSNNIETKI 192
+NN I K+
Sbjct: 590 VNNHLEINKKL 600
>sp|Q4L5W6|DPO3_STAHJ DNA polymerase III PolC-type OS=Staphylococcus haemolyticus (strain
JCSC1435) GN=polC PE=3 SV=1
Length = 1438
Score = 71.2 bits (173), Expect = 6e-12, Method: Composition-based stats.
Identities = 51/191 (26%), Positives = 96/191 (50%), Gaps = 14/191 (7%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++K+ +I + + NP ++ + + +T
Sbjct: 422 YVVFDVETTGLSNQYD--QIIELAAVKVKDGEII-DKFERFSNPHEKLSETIINLTHITD 478
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 479 DMLTDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 535
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 536 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTESTAYIFIKMVQQMKELG---- 589
Query: 182 INNSNNIETKI 192
+ N +I K+
Sbjct: 590 VTNHKDINQKL 600
>sp|O83649|DPO3E_TREPA DNA polymerase III subunit epsilon OS=Treponema pallidum (strain
Nichols) GN=dnaQ PE=3 SV=1
Length = 215
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Query: 1 MHRHIVL---DIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAI 57
+H H+ D ETTGL + RIIEIG V + I I P R I
Sbjct: 9 VHEHVAFTAFDTETTGLKA-EEDRIIEIGAVTFDRKGIIAR-FSTLIFPDRAIPPDVSKI 66
Query: 58 HGLTTKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYR 117
+ +T L NK +F EIV +F ++ + ++ HNA FDV FL+ ELSL + ++
Sbjct: 67 NHITDDMLVNKPRFCEIVSDFSRFIKGTVLVAHNANFDVEFLNAELSLCKKQPLS---HK 123
Query: 118 ITDTLLMARKIHTG 131
+ DT MA+ + G
Sbjct: 124 VVDTYAMAQAVFPG 137
>sp|P0C1P9|DPO3_STAAU DNA polymerase III PolC-type OS=Staphylococcus aureus GN=polC PE=3
SV=1
Length = 1435
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 420 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 476
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 477 DMLVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 533
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 534 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELG---- 587
Query: 182 INNSNNIETKI 192
+ N N I K+
Sbjct: 588 VLNHNEINKKL 598
>sp|P68852|DPO3_STAAW DNA polymerase III PolC-type OS=Staphylococcus aureus (strain MW2)
GN=polC PE=3 SV=1
Length = 1436
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 420 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 476
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 477 DMLVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 533
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 534 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKEL 586
>sp|Q2G1Z8|DPO3_STAA8 DNA polymerase III PolC-type OS=Staphylococcus aureus (strain NCTC
8325) GN=polC PE=3 SV=1
Length = 1436
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 420 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 476
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 477 DMLVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 533
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 534 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKEL 586
>sp|Q2FHH4|DPO3_STAA3 DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
USA300) GN=polC PE=3 SV=1
Length = 1436
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 89/175 (50%), Gaps = 10/175 (5%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 420 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 476
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 477 DMLVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 533
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNL 176
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 534 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKEL 586
>sp|Q6G9U9|DPO3_STAAS DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
MSSA476) GN=polC PE=3 SV=1
Length = 1438
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 422 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 478
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 479 DMLVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 535
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 536 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELG---- 589
Query: 182 INNSNNIETKI 192
+ N N I K+
Sbjct: 590 VLNHNEINKKL 600
>sp|A6QGG4|DPO3_STAAE DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
Newman) GN=polC PE=3 SV=1
Length = 1438
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 422 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 478
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 479 DMLVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 535
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 536 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELG---- 589
Query: 182 INNSNNIETKI 192
+ N N I K+
Sbjct: 590 VLNHNEINKKL 600
>sp|Q5HGG7|DPO3_STAAC DNA polymerase III PolC-type OS=Staphylococcus aureus (strain COL)
GN=polC PE=3 SV=2
Length = 1438
Score = 69.7 bits (169), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 422 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 478
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 479 DMLVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 535
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 536 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELG---- 589
Query: 182 INNSNNIETKI 192
+ N N I K+
Sbjct: 590 VLNHNEINKKL 600
>sp|Q6GHH1|DPO3_STAAR DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
MRSA252) GN=polC PE=3 SV=1
Length = 1438
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 422 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 478
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 479 DMLVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 535
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 536 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELG---- 589
Query: 182 INNSNNIETKI 192
+ N N I K+
Sbjct: 590 VLNHNEINKKL 600
>sp|P63982|DPO3_STAAN DNA polymerase III PolC-type OS=Staphylococcus aureus (strain N315)
GN=polC PE=1 SV=1
Length = 1438
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 422 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 478
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 479 DMLVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 535
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 536 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELG---- 589
Query: 182 INNSNNIETKI 192
+ N N I K+
Sbjct: 590 VLNHNEINKKL 600
>sp|P63981|DPO3_STAAM DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Mu50
/ ATCC 700699) GN=polC PE=3 SV=1
Length = 1438
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 422 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 478
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 479 DMLVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 535
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 536 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELG---- 589
Query: 182 INNSNNIETKI 192
+ N N I K+
Sbjct: 590 VLNHNEINKKL 600
>sp|A7X1P4|DPO3_STAA1 DNA polymerase III PolC-type OS=Staphylococcus aureus (strain Mu3 /
ATCC 700698) GN=polC PE=3 SV=1
Length = 1438
Score = 69.3 bits (168), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 52/191 (27%), Positives = 95/191 (49%), Gaps = 14/191 (7%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 422 YVVFDVETTGLSNQYD--KIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITD 478
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 479 DMLVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTL 535
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 536 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELG---- 589
Query: 182 INNSNNIETKI 192
+ N N I K+
Sbjct: 590 VLNHNEINKKL 600
>sp|Q720A2|DPO3_LISMF DNA polymerase III PolC-type OS=Listeria monocytogenes serotype 4b
(strain F2365) GN=polC PE=3 SV=1
Length = 1444
Score = 68.9 bits (167), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 15/187 (8%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
+ V D+ETTGL+ + IIE+ V++KN +I + +I+PG + + + G+T
Sbjct: 428 YCVFDVETTGLSAV-YDTIIELAGVKMKNGEII-DKFEAFIDPGHPLSATTINLTGITDD 485
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
+K ++ F + + ++ HNA+FD+GF++ +G K + DTL
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVG---LEKAENAVVDTLE 542
Query: 124 MARKIHTGKRN-SLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAM-----TRGQSNLN 177
+AR ++ +N L+ L ++NI I H + DAE A YLA + N++
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNI--ILEQHHRAVFDAE--ATAYLAWKLIKDAKEMHNID 598
Query: 178 FKPKINN 184
F +N+
Sbjct: 599 FHDSLND 605
>sp|Q8Y7G1|DPO3_LISMO DNA polymerase III PolC-type OS=Listeria monocytogenes serovar 1/2a
(strain ATCC BAA-679 / EGD-e) GN=polC PE=3 SV=1
Length = 1444
Score = 68.9 bits (167), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 15/187 (8%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
+ V D+ETTGL+ + IIE+ V++KN +I + +I+PG + + + G+T
Sbjct: 428 YCVFDVETTGLSAV-YDTIIELAGVKMKNGEII-DKFEAFIDPGHPLSATTINLTGITDD 485
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
+K ++ F + + ++ HNA+FD+GF++ +G K + DTL
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVG---LEKAENAVVDTLE 542
Query: 124 MARKIHTGKRN-SLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAM-----TRGQSNLN 177
+AR ++ +N L+ L ++NI I H + DAE A YLA + N++
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNI--ILEQHHRAVFDAE--ATAYLAWKLIKDAKEMHNID 598
Query: 178 FKPKINN 184
F +N+
Sbjct: 599 FHDSLND 605
>sp|Q2YXK4|DPO3_STAAB DNA polymerase III PolC-type OS=Staphylococcus aureus (strain
bovine RF122 / ET3-1) GN=polC PE=3 SV=1
Length = 1438
Score = 68.9 bits (167), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/190 (26%), Positives = 95/190 (50%), Gaps = 12/190 (6%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
++V D+ETTGL+ ++IIE+ V++ N +I + + NP ++ + + +T
Sbjct: 422 YVVFDVETTGLSN-QYNKIIELAAVKVHNGEII-DKFERFSNPHERLSETIINLTHITDD 479
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
L + + E++ F +V ++ + HNA+FD+GF+D LG+ T + DTL
Sbjct: 480 MLVDAPEIEEVLTEFKEWVGDAIFVAHNASFDMGFIDTGYERLGFGPSTN---GVIDTLE 536
Query: 124 MARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
++R I+T ++ L+ L +Y + H + D E A +++ M + L +
Sbjct: 537 LSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYIFIKMVQQMKELG----V 590
Query: 183 NNSNNIETKI 192
N N I K+
Sbjct: 591 LNHNEINKKL 600
>sp|A0AIC1|DPO3_LISW6 DNA polymerase III PolC-type OS=Listeria welshimeri serovar 6b
(strain ATCC 35897 / DSM 20650 / SLCC5334) GN=polC PE=3
SV=1
Length = 1444
Score = 68.6 bits (166), Expect = 3e-11, Method: Composition-based stats.
Identities = 52/187 (27%), Positives = 93/187 (49%), Gaps = 15/187 (8%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
+ V D+ETTGL+ + IIE+ V++KN +I + +I+PG + + + G+T
Sbjct: 428 YCVFDVETTGLSAVY-DTIIELAGVKMKNGEII-DKFEAFIDPGHPLSATTINLTGITDD 485
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
+K ++ F + + ++ HNA+FD+GF++ +G K + DTL
Sbjct: 486 MVKGSDPIDVVLKRFKEWSGDDILVAHNASFDMGFINTAYEKVG---LEKADNAVVDTLE 542
Query: 124 MARKIHTGKRN-SLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAM-----TRGQSNLN 177
+AR ++ +N L+ L ++NI I H + DAE A YLA + ++N
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNI--ILEQHHRAVFDAE--ATAYLAWKLIKDAKEMHDIN 598
Query: 178 FKPKINN 184
F +N+
Sbjct: 599 FHDSLND 605
>sp|P13267|DPO3_BACSU DNA polymerase III PolC-type OS=Bacillus subtilis (strain 168)
GN=polC PE=1 SV=2
Length = 1437
Score = 68.6 bits (166), Expect = 4e-11, Method: Composition-based stats.
Identities = 45/169 (26%), Positives = 87/169 (51%), Gaps = 7/169 (4%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
++V D+ETTGL+ + IIE+ V++K +I + + NP R + + + G+T
Sbjct: 421 YVVFDVETTGLSAVY-DTIIELAAVKVKGGEII-DKFEAFANPHRPLSATIIELTGITDD 478
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
L++ +++ +F ++ + ++ HNA+FD+GFL++ L K + DTL
Sbjct: 479 MLQDAPDVVDVIRDFREWIGDDILVAHNASFDMGFLNVAYKKL--LEVEKAKNPVIDTLE 536
Query: 124 MARKIHTGKRN-SLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTR 171
+ R ++ +N L+ LC +++I H + D E A + L M +
Sbjct: 537 LGRFLYPEFKNHRLNTLCKKFDIELTQH--HRAIYDTEATAYLLLKMLK 583
>sp|Q92C34|DPO3_LISIN DNA polymerase III PolC-type OS=Listeria innocua serovar 6a (strain
CLIP 11262) GN=polC PE=3 SV=1
Length = 1444
Score = 68.2 bits (165), Expect = 5e-11, Method: Composition-based stats.
Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 10/166 (6%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
+ V D+ETTGL+ + IIE+ V++KN +I + +I+PG + + + G+T
Sbjct: 428 YCVFDVETTGLSAV-YDTIIELAGVKMKNGEII-DKFEAFIDPGHPLSATTINLTGITDD 485
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
+K ++ F + + ++ HNA+FD+GF++ +G K + DTL
Sbjct: 486 MVKGSDPIDVVLKQFREWSGDDILVAHNASFDMGFINTAYEKVG---LEKAKNAVVDTLE 542
Query: 124 MARKIHTGKRN-SLDALCDRYNISKIHRTLHGGLLDAELLAEVYLA 168
+AR ++ +N L+ L ++NI I H + DAE A YLA
Sbjct: 543 LARFLYPHFKNHRLNTLTKKFNI--ILEQHHRAVFDAE--ATAYLA 584
>sp|Q8DWE0|DPO3_STRMU DNA polymerase III PolC-type OS=Streptococcus mutans serotype c
(strain ATCC 700610 / UA159) GN=polC PE=3 SV=1
Length = 1465
Score = 67.8 bits (164), Expect = 6e-11, Method: Composition-based stats.
Identities = 50/190 (26%), Positives = 90/190 (47%), Gaps = 11/190 (5%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
++V D+ETTGL+ I+ + +I+I ++ I +I+PG + + G+T +
Sbjct: 425 YVVFDVETTGLSAIN-NDLIQIAASKMHKGNIV-EQFDEFIDPGHPLSQFTTDLTGITDQ 482
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
+K S+++ F ++ ++ ++ HNA FDVGF++ + K + DTL
Sbjct: 483 HVKGAKPISQVLQEFQSFCQDTVLVAHNATFDVGFMNANYE---RHDLPKITQPVIDTLE 539
Query: 124 MARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR ++ KR+ L L R+ +S H H DAE + + K +
Sbjct: 540 FARNLYPEYKRHGLGPLTKRFQVSLEHH--HMANYDAEATGRLLFIFLKEAKE---KHGV 594
Query: 183 NNSNNIETKI 192
NN ++ TKI
Sbjct: 595 NNLLDLNTKI 604
>sp|A3CQI2|DPO3_STRSV DNA polymerase III PolC-type OS=Streptococcus sanguinis (strain
SK36) GN=polC PE=3 SV=1
Length = 1462
Score = 67.0 bits (162), Expect = 1e-10, Method: Composition-based stats.
Identities = 45/158 (28%), Positives = 78/158 (49%), Gaps = 8/158 (5%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
++V D+ETTGL+ + + +I++ ++ I +INPG + G+T +
Sbjct: 424 YVVFDVETTGLSAV-YNDLIQVAASKMHKGNIIAE-FDEFINPGHPLSAFTTDLTGITDE 481
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
++N +++ F + +S ++ HNA FDVGF+++ G K I + DTL
Sbjct: 482 HVRNAKPLEQVLKEFQEFCQDSVLVAHNATFDVGFMNVNYERHG---LPKIIQPVIDTLE 538
Query: 124 MARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAE 160
AR ++ KR+ L L R+ I+ H H DAE
Sbjct: 539 FARNLYPEYKRHGLGPLTKRFQIALEHH--HMANYDAE 574
>sp|Q8EQU6|DPO3_OCEIH DNA polymerase III PolC-type OS=Oceanobacillus iheyensis (strain
DSM 14371 / JCM 11309 / KCTC 3954 / HTE831) GN=polC PE=3
SV=1
Length = 1428
Score = 67.0 bits (162), Expect = 1e-10, Method: Composition-based stats.
Identities = 44/157 (28%), Positives = 81/157 (51%), Gaps = 8/157 (5%)
Query: 5 IVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTKF 64
+V D+ETTGL+ + IIE+ V+IK +I + + NP ++ + + G+T
Sbjct: 415 VVFDVETTGLSAV-YDTIIELAAVKIKGGEIV-DRFESFANPHHALSQTTIDLTGITDDM 472
Query: 65 LKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLLM 124
+ + + ++++ +F ++ N ++ HNA+FD+GFL+ + Y + + DTL +
Sbjct: 473 VNDAPEVADVLKDFHTWMGNDILVAHNASFDMGFLNQGFQRIDYEKASN---PVVDTLEL 529
Query: 125 ARKIHTGKRN-SLDALCDRYNISKIHRTLHGGLLDAE 160
AR + RN L+ LC +I H + DAE
Sbjct: 530 ARFLLPELRNHRLNTLCKHLDIELTQH--HRAIYDAE 564
>sp|Q49X49|DPO3_STAS1 DNA polymerase III PolC-type OS=Staphylococcus saprophyticus subsp.
saprophyticus (strain ATCC 15305 / DSM 20229) GN=polC
PE=3 SV=1
Length = 1438
Score = 65.1 bits (157), Expect = 4e-10, Method: Composition-based stats.
Identities = 53/215 (24%), Positives = 105/215 (48%), Gaps = 22/215 (10%)
Query: 4 HIVLDIETTGL-NIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL N D +IIE+ V++K+ +I + + NP ++ + ++
Sbjct: 422 YVVFDVETTGLSNQYD--KIIELAAVKVKDGEII-DKFERFSNPHERLSETIKNLTHISD 478
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
L + + E++ F ++V ++ + HNA+FD+GF+D +G T + DTL
Sbjct: 479 DMLVDAPEIEEVLTEFKSWVGDAIFVAHNASFDMGFIDTGYEHVGIGASTN---GVIDTL 535
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPK 181
++R I+T ++ L+ L +Y + H + D E A +++ M + L
Sbjct: 536 ELSRTINTEYGKHGLNFLAKKYGVELTQH--HRAIYDTEATAYMFIKMLKQLEALG---- 589
Query: 182 INNSNNIETKIK--------IPNNIPIKLANSNEL 208
++N +I T + PN++ + + N + L
Sbjct: 590 VHNHQDINTSLSNEDAYKRARPNHVTLIVQNQDGL 624
>sp|Q9CDT7|DPO3_LACLA DNA polymerase III PolC-type OS=Lactococcus lactis subsp. lactis
(strain IL1403) GN=polC PE=3 SV=1
Length = 1638
Score = 65.1 bits (157), Expect = 4e-10, Method: Composition-based stats.
Identities = 48/159 (30%), Positives = 78/159 (49%), Gaps = 10/159 (6%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEI-KNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V D+ETTGL+ + + +I+I ++ K I + +INPG + + G+T
Sbjct: 596 YVVFDVETTGLSAVH-NDLIQIAATKMHKGNPI--DEFDEFINPGYRLSEFTTELTGITD 652
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+KN E++ F + + ++ HNA FDVGF++M S G T+ + DTL
Sbjct: 653 DHVKNAKPLYEVLTKFQKFCEGTILVAHNATFDVGFMNMNYSRNGLPIITQ---PVVDTL 709
Query: 123 LMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAE 160
AR ++ KR L L ++ I H H DAE
Sbjct: 710 EFARNLYPEMKRFGLGQLTKKFQIGLEHH--HMANFDAE 746
>sp|P54394|DING_BACSU Probable ATP-dependent helicase DinG homolog OS=Bacillus subtilis
(strain 168) GN=dinG PE=3 SV=1
Length = 931
Score = 64.7 bits (156), Expect = 5e-10, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 80/169 (47%), Gaps = 7/169 (4%)
Query: 2 HRHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLT 61
R +V+D+ETTG + G +II+I V I+N QIT YINP + + G++
Sbjct: 4 QRFVVIDVETTGNSPKKGDKIIQIAAVVIENGQIT-ERFSKYINPNKSIPAFIEQLTGIS 62
Query: 62 TKFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDT 121
+ ++N+ F + + + + + HN FD+GF+ EL G F + DT
Sbjct: 63 NQMVENEQPFEAVAEEVFQLLDGAYFVAHNIHFDLGFVKYELHKAG---FQLPDCEVLDT 119
Query: 122 LLMARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAM 169
+ ++R + G + L L + + H H DAE+ ++L +
Sbjct: 120 VELSRIVFPGFEGYKLTELSEELQLR--HDQPHRADSDAEVTGLIFLEI 166
>sp|Q8XJR3|DPO3_CLOPE DNA polymerase III PolC-type OS=Clostridium perfringens (strain 13
/ Type A) GN=polC PE=3 SV=1
Length = 1449
Score = 64.7 bits (156), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/163 (28%), Positives = 83/163 (50%), Gaps = 9/163 (5%)
Query: 3 RHIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTT 62
++V DIETTG + +IIEIG V++K+ +I ++ +++P + + +T
Sbjct: 434 EYVVFDIETTGFSS-KNDKIIEIGAVKLKDGEIV-DSFSTFVDPKVNIPYKITELTSITQ 491
Query: 63 KFLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTL 122
+ + E++ F+ +V NS ++ HNAAFDVGF+ L +G + + DT+
Sbjct: 492 NMVNGQPTIDEVLPKFMEFVGNSVLVAHNAAFDVGFIKKNLMDMGKT----LKNPVMDTV 547
Query: 123 LMARKIHTG-KRNSLDALCDRYNIS--KIHRTLHGGLLDAELL 162
+AR ++ K+ L+ + IS HR + AE+L
Sbjct: 548 PLARYLYPDLKKVKLNLVAKHLGISLENHHRAVDDAKATAEIL 590
>sp|Q8NZB5|DPO3_STRP8 DNA polymerase III PolC-type OS=Streptococcus pyogenes serotype M18
(strain MGAS8232) GN=polC PE=3 SV=1
Length = 1465
Score = 64.3 bits (155), Expect = 7e-10, Method: Composition-based stats.
Identities = 46/169 (27%), Positives = 79/169 (46%), Gaps = 8/169 (4%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
++V D+ETTGL+ ++ + +I+I ++ I +I+PG + G+T K
Sbjct: 427 YVVFDVETTGLSAMN-NDLIQIAASKMFKGNIV-EQFDEFIDPGHPLSAFTTELTGITDK 484
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
L+ ++ F ++ +S ++ HNA+FDVGF++ N K + DTL
Sbjct: 485 HLQGAKPLVTVLKAFQDFCKDSILVAHNASFDVGFMNANYE---RHNLPKITQPVIDTLE 541
Query: 124 MARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTR 171
AR ++ KR+ L L R+ +S H H DAE + R
Sbjct: 542 FARNLYPEYKRHGLGPLTKRFQVSLDHH--HMANYDAEATGRLLFIFLR 588
>sp|Q819Y5|DPO3_BACCR DNA polymerase III PolC-type OS=Bacillus cereus (strain ATCC 14579
/ DSM 31) GN=polC PE=3 SV=1
Length = 1435
Score = 63.9 bits (154), Expect = 8e-10, Method: Composition-based stats.
Identities = 43/185 (23%), Positives = 90/185 (48%), Gaps = 10/185 (5%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
++V D+ETTGL+ + +IE+ V++K +I + + NP + + + + G+T
Sbjct: 420 YVVFDVETTGLSAV-YDTVIELAAVKVKGGEII-DRFESFANPHQPLSATIIELTGITDD 477
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
L + + E+ F ++ + ++ HNA+FD+GF+++ G K + DTL
Sbjct: 478 MLTDAPEVDEVFKKFEEWMGDHTLVAHNASFDMGFINVGFKKAG---LEKTNNPVIDTLE 534
Query: 124 MARKIHTGKRN-SLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRG--QSNLNFKP 180
+AR + +N L+ +C + +I H + D E + + M + + +
Sbjct: 535 LARFLFPEMKNHRLNTMCKKLDIELTQH--HRAIYDTEATGYLLVKMLKDVIEKGFEYHD 592
Query: 181 KINNS 185
++N+S
Sbjct: 593 QLNDS 597
>sp|A4VXT1|DPO3_STRSY DNA polymerase III PolC-type OS=Streptococcus suis (strain 05ZYH33)
GN=polC PE=3 SV=1
Length = 1463
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 11/190 (5%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
++V D+ETTGL+ ++ + +I+I ++ I +I+PG + + G+T +
Sbjct: 425 YVVFDVETTGLSAVN-NALIQIAASKMHKGNIIAE-FDEFIDPGHPLSQFTTDLTGITDE 482
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
++ +++ F ++ +S ++ HNA FDVGF+++ G ++ + DTL
Sbjct: 483 HVRGSKPLEQVLREFQDFCQDSVMVAHNATFDVGFMNVNYERAGLPIISQ---PVIDTLE 539
Query: 124 MARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR ++ KR+ L L R+ ++ H H DAE + + K +
Sbjct: 540 FARNLYPDFKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLLFIFLKDALE---KHNL 594
Query: 183 NNSNNIETKI 192
N N + T++
Sbjct: 595 TNLNQLNTEL 604
>sp|A4W428|DPO3_STRS2 DNA polymerase III PolC-type OS=Streptococcus suis (strain 98HAH33)
GN=polC PE=3 SV=1
Length = 1463
Score = 63.5 bits (153), Expect = 1e-09, Method: Composition-based stats.
Identities = 45/190 (23%), Positives = 90/190 (47%), Gaps = 11/190 (5%)
Query: 4 HIVLDIETTGLNIIDGHRIIEIGCVEIKNRQITGNNLHYYINPGRDSEKSALAIHGLTTK 63
++V D+ETTGL+ ++ + +I+I ++ I +I+PG + + G+T +
Sbjct: 425 YVVFDVETTGLSAVN-NALIQIAASKMHKGNIIAE-FDEFIDPGHPLSQFTTDLTGITDE 482
Query: 64 FLKNKLKFSEIVDNFLNYVSNSEIIIHNAAFDVGFLDMELSLLGYSNFTKYIYRITDTLL 123
++ +++ F ++ +S ++ HNA FDVGF+++ G ++ + DTL
Sbjct: 483 HVRGSKPLEQVLREFQDFCQDSVMVAHNATFDVGFMNVNYERAGLPIISQ---PVIDTLE 539
Query: 124 MARKIHTG-KRNSLDALCDRYNISKIHRTLHGGLLDAELLAEVYLAMTRGQSNLNFKPKI 182
AR ++ KR+ L L R+ ++ H H DAE + + K +
Sbjct: 540 FARNLYPDFKRHGLGPLTKRFGVALEHH--HMANYDAEATGRLLFIFLKDALE---KHNL 594
Query: 183 NNSNNIETKI 192
N N + T++
Sbjct: 595 TNLNQLNTEL 604
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.138 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,051,715
Number of Sequences: 539616
Number of extensions: 3264241
Number of successful extensions: 10017
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 105
Number of HSP's that attempted gapping in prelim test: 9793
Number of HSP's gapped (non-prelim): 232
length of query: 230
length of database: 191,569,459
effective HSP length: 114
effective length of query: 116
effective length of database: 130,053,235
effective search space: 15086175260
effective search space used: 15086175260
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.3 bits)