BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14504
(951 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 632 bits (1631), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/678 (50%), Positives = 456/678 (67%), Gaps = 10/678 (1%)
Query: 11 NGKNILSQQDEEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVL 70
G+ + ++ E L++Y IDLT A GKLDPVIGRD+EIRR IQ+L RR+KNNPVL
Sbjct: 137 GGRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVL 196
Query: 71 IGEPGVGKTAIVEGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFEDRLKKILK 130
IGEPGVGKTAIVEGLAQRI+ G+VP G KYRGEFE+RLK +++
Sbjct: 197 IGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQ 256
Query: 131 EISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIE 190
E+ +Q ++I+FIDELHT++G GK EG++DAGNMLKP L+RGEL IGATTL+EYR+ IE
Sbjct: 257 EVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IE 315
Query: 191 KDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 250
KD A ERRFQ + V+EP +EETISILRGL++KYEVHHGV I+D AI+AA+ LS+RYI++R
Sbjct: 316 KDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITER 375
Query: 251 FMPXXXXXXXXXXXXXXXXXXXXXPEIMDKLERRLIQLKIEHEAIKREYDXXXXXXXXXX 310
+P PE +D LER+ +QL+IE EA+K+E D
Sbjct: 376 RLPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAI 435
Query: 311 XXXXXXXXXXYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYG 370
A L W+ E+ +++ ++ + +++VR +I A R+ D ++L+YG
Sbjct: 436 EAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYG 495
Query: 371 ELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREK 430
EL KLE ++ S+K +F L+ V E+IAEIVSR TGIPVSK+++ EREK
Sbjct: 496 ELPKLEAEVEALSEK-----LRGARFVRLE--VTEEDIAEIVSRWTGIPVSKLLEGEREK 548
Query: 431 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTL 490
LL +E L KRVVGQDEAI AV++AIRR+R+GL D RP GSF+FLGPTGVGKTEL KTL
Sbjct: 549 LLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTL 608
Query: 491 SACIFNNEESIIRIDMSEFIEKHSISRLIXXXXXXXXXXXXXXLTEIVRRKPYSLILLDE 550
+A +F+ EE++IRIDM+E++EKH++SRLI LTE VRR+PYS+IL DE
Sbjct: 609 AATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDE 668
Query: 551 IEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE-MEKG-DKEII 608
IEKA+ DVFNILLQILDDGRLTD+ GRT++FRNT+I++TSNLGS I E ++KG E I
Sbjct: 669 IEKAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERI 728
Query: 609 KLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSXXXXXXXXXXXXXXXXXXXXXXSK 668
+ V ++ +FRPEF+NR+D+I+VFR L ++ I ++
Sbjct: 729 RDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTE 788
Query: 669 AALKKISNIGFDLIYGAR 686
AA ++ G+D ++GAR
Sbjct: 789 AAKDFLAERGYDPVFGAR 806
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 496 bits (1276), Expect = e-140, Method: Compositional matrix adjust.
Identities = 300/654 (45%), Positives = 388/654 (59%), Gaps = 111/654 (16%)
Query: 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIING 92
DLT A+ LDPVIGR EI+R I+VL RR+KNNPVLIGEPGVGKTAI EGLAQ+IIN
Sbjct: 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINN 228
Query: 93 EVPNXXXXXXXXXXXXXXXXXGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGT 152
EVP GTKYRGEFEDRLKK++ EI +II+FID
Sbjct: 229 EVPEILRDKRVMTLDM-----GTKYRGEFEDRLKKVMDEI-RQAGNIILFID-------- 274
Query: 153 GKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEET 212
+IDA N+LKP L+RGEL CIGATTL+EYR+YIEKDAA ERRFQ I V++P ++E+
Sbjct: 275 ----AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDES 330
Query: 213 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPXXXXXXXXXXXXXXXXXXX 272
I IL+GL+ +YE HH V ITD AI AA +LS RYISDRF+P
Sbjct: 331 IQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSF 390
Query: 273 XXPEIMDKLERRLIQLKIEHEAIKREYDXXXXXXXXXXXXXXXXXXXXYANLEKIWKYEK 332
P + +LE++L +++ E +A + + ++
Sbjct: 391 TTPPNLKELEQKLDEVRKEKDAAVQSQE---------------------------FEKAA 423
Query: 333 TLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNN 392
+L Q+++E++E T+KS W K K G+ N
Sbjct: 424 SLRDTEQRLREQVED--------TKKS-W----KEKQGQEN------------------- 451
Query: 393 ANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAV 452
++V ++IA +VS TG+PVSKI Q E +KLLN+EN+L RV+GQDEA+ AV
Sbjct: 452 --------SEVTVDDIAMVVSSWTGVPVSKIAQTETDKLLNMENILHSRVIGQDEAVVAV 503
Query: 453 SNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 512
+ A+RR+R+GL D KRP GSF+FLGPTGVGKTEL + L+ IF +EES+IRIDMSE++EK
Sbjct: 504 AKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEK 563
Query: 513 HSISRLIXXXXXXXXXXXXXXLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLT 572
HS S LTE VRRKPYS++LLD IEKA+ DVFNILLQ+L+DGRLT
Sbjct: 564 HSTS--------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLT 609
Query: 573 DNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDII 632
D++GRT++FRNTI++MTSN+G+ + K VM E+K FRPEFINRID+II
Sbjct: 610 DSKGRTVDFRNTILIMTSNVGASE------------KDKVMGELKRAFRPEFINRIDEII 657
Query: 633 VFRYLNRKNILSXXXXXXXXXXXXXXXXXXXXXXSKAALKKISNIGFDLIYGAR 686
VF L +K++ + AA K++ G DL YGAR
Sbjct: 658 VFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGAR 711
>pdb|4HSE|A Chain A, Crystal Structure Of Clpb Nbd1 In Complex With Guanidinium
Chloride And Adp
Length = 397
Score = 362 bits (929), Expect = e-100, Method: Compositional matrix adjust.
Identities = 195/405 (48%), Positives = 262/405 (64%), Gaps = 8/405 (1%)
Query: 12 GKNILSQQDEEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLI 71
G ++ ++ E L++Y IDLT A GKLDPVIGRD+EIRR IQ+L RR+KNNPVLI
Sbjct: 1 GSHMQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLI 60
Query: 72 GEPGVGKTAIVEGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFEDRLKKILKE 131
GEPGVGKTAIVEGLAQRI+ G+VP G KYRGEFE+RLK +++E
Sbjct: 61 GEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQE 120
Query: 132 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEK 191
+ +Q ++I+FIDELHT++G GK EG++DAGNMLKP L+RGEL IGATTL+EYR+ IEK
Sbjct: 121 VVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALARGELRLIGATTLDEYRE-IEK 179
Query: 192 DAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251
D A ERRFQ + V+EP +EETISILRGL++KYEVHHGV I+D AI+AA+ LS+RYI++R
Sbjct: 180 DPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERR 239
Query: 252 MPXXXXXXXXXXXXXXXXXXXXXPEIMDKLERRLIQLKIEHEAIKREYDXXXXXXXXXXX 311
+P PE +D LER+ +QL+IE EA+K+E D
Sbjct: 240 LPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIE 299
Query: 312 XXXXXXXXXYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGE 371
A L W+ E+ +++ ++ + +++VR +I A R+ D ++L+YGE
Sbjct: 300 AEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGE 359
Query: 372 LNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTT 416
L KLE ++ S+K +F L +V E+IAEIVSR T
Sbjct: 360 LPKLEAEVEALSEK-----LRGARFVRL--EVTEEDIAEIVSRWT 397
>pdb|1JBK|A Chain A, Crystal Structure Of The First Nucelotide Binding Domain
Of Clpb
Length = 195
Score = 284 bits (727), Expect = 1e-76, Method: Composition-based stats.
Identities = 135/195 (69%), Positives = 159/195 (81%)
Query: 23 HIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIV 82
H+ LKKYTIDLTE+A GKLDPVIGRD+EIRR IQVLQRR+KNNPVLIGEPGVGKTAIV
Sbjct: 1 HMQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIV 60
Query: 83 EGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFEDRLKKILKEISNNQKDIIIF 142
EGLAQRIINGEVP G KYRGEFE+RLK +L +++ + ++I+F
Sbjct: 61 EGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILF 120
Query: 143 IDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKI 202
IDELHTM+G GK +G++DAGNMLKP L+RGELHC+GATTL+EYRQYIEKDAA ERRFQK+
Sbjct: 121 IDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKV 180
Query: 203 LVEEPDIEETISILR 217
V EP +E+TI+ILR
Sbjct: 181 FVAEPSVEDTIAILR 195
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 256 bits (654), Expect = 4e-68, Method: Compositional matrix adjust.
Identities = 139/262 (53%), Positives = 171/262 (65%), Gaps = 18/262 (6%)
Query: 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIING 92
DLT A+ LDPVIGR EI+R I+VL RR+KNNPVLIGEPGVGKTAI EGLAQ+IIN
Sbjct: 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINN 228
Query: 93 EVPNXXXXXXXXXXXXXXXXXGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGT 152
EVP GTKYRGEFEDRLKK++ EI +II+FID
Sbjct: 229 EVPEILRDKRVMTLDM-----GTKYRGEFEDRLKKVMDEI-RQAGNIILFID-------- 274
Query: 153 GKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEET 212
+IDA N+LKP L+RGEL CIGATTL+EYR+YIEKDAA ERRFQ I V++P ++E+
Sbjct: 275 ----AAIDASNILKPSLARGELQCIGATTLDEYRKYIEKDAALERRFQPIQVDQPSVDES 330
Query: 213 ISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPXXXXXXXXXXXXXXXXXXX 272
I IL+GL+ +YE HH V ITD AI AA +LS RYISDRF+P
Sbjct: 331 IQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLIDEAGSKVRLRSF 390
Query: 273 XXPEIMDKLERRLIQLKIEHEA 294
P + +LE++L +++ E +A
Sbjct: 391 TTPPNLKELEQKLDEVRKEKDA 412
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 254 bits (648), Expect = 2e-67, Method: Composition-based stats.
Identities = 132/249 (53%), Positives = 175/249 (70%), Gaps = 2/249 (0%)
Query: 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 499
KRVVGQDEAI AV++AIRR+R+GL D RP GSF+FLGPTGVGKTEL KTL+A +F+ EE
Sbjct: 14 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE 73
Query: 500 SIIRIDMSEFIEKHSISRLIXXXXXXXXXXXXXXLTEIVRRKPYSLILLDEIEKANSDVF 559
++IRIDM+E++EKH++SRLI LTE VRR+PYS+IL D IEKA+ DVF
Sbjct: 74 AMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVF 133
Query: 560 NILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE-MEKG-DKEIIKLAVMNEVK 617
NILLQILDDGRLTD+ GRT++FRNT+I++TSNLGS I E ++KG E I+ V ++
Sbjct: 134 NILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQ 193
Query: 618 IYFRPEFINRIDDIIVFRYLNRKNILSXXXXXXXXXXXXXXXXXXXXXXSKAALKKISNI 677
+FRPEF+NR+D+I+VFR L ++ I ++AA ++
Sbjct: 194 QHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAER 253
Query: 678 GFDLIYGAR 686
G+D ++GAR
Sbjct: 254 GYDPVFGAR 262
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 246 bits (629), Expect = 3e-65, Method: Composition-based stats.
Identities = 131/249 (52%), Positives = 171/249 (68%), Gaps = 2/249 (0%)
Query: 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 499
KRVVGQDEAI AV++AIRR+R+GL D RP GSF+FLGPTGVGKTEL KTL+A +F+ EE
Sbjct: 17 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEE 76
Query: 500 SIIRIDMSEFIEKHSISRLIXXXXXXXXXXXXXXLTEIVRRKPYSLILLDEIEKANSDVF 559
+ IRID +E+ EKH++SRLI LTE VRR+PYS+IL D IEKA+ DVF
Sbjct: 77 AXIRIDXTEYXEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVF 136
Query: 560 NILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE-MEKG-DKEIIKLAVMNEVK 617
NILLQ LDDGRLTD+ GRT++FRNT+I+ TSNLGS I E ++KG E I+ V ++
Sbjct: 137 NILLQXLDDGRLTDSHGRTVDFRNTVIIXTSNLGSPLILEGLQKGWPYERIRDEVFKVLQ 196
Query: 618 IYFRPEFINRIDDIIVFRYLNRKNILSXXXXXXXXXXXXXXXXXXXXXXSKAALKKISNI 677
+FRPEF+NR+D+I+VFR L ++ I ++AA ++
Sbjct: 197 QHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQXSYLRARLAEKRISLELTEAAKDFLAER 256
Query: 678 GFDLIYGAR 686
G+D ++GAR
Sbjct: 257 GYDPVFGAR 265
>pdb|2P65|A Chain A, Crystal Structure Of The First Nucleotide Binding Domain
Of Chaperone Clpb1, Putative, (Pv089580) From Plasmodium
Vivax
Length = 187
Score = 237 bits (605), Expect = 2e-62, Method: Composition-based stats.
Identities = 113/182 (62%), Positives = 144/182 (79%), Gaps = 1/182 (0%)
Query: 27 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLA 86
L+KY+ DLT AR GKLDPVIGRD EIRRAIQ+L RR+KNNP+L+G+PGVGKTAIVEGLA
Sbjct: 5 LEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLA 64
Query: 87 QRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 146
+I+ G+VP+ G KYRG+FE+RLK ILKE+ + + +++FIDE+
Sbjct: 65 IKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEI 124
Query: 147 HTMIGTGKV-EGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVE 205
HT++G G V EG++DAGN+LKP L+RGEL CIGATT++EYRQ+IEKD A ERRFQ+ILVE
Sbjct: 125 HTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTVSEYRQFIEKDKALERRFQQILVE 184
Query: 206 EP 207
+P
Sbjct: 185 QP 186
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 231 bits (590), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/237 (49%), Positives = 155/237 (65%), Gaps = 5/237 (2%)
Query: 21 EEHIG---YLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVG 77
EE G L+ +T +L + AR+G +DP+IGR+ E+ RAIQVL RR KNNP+L+GE GVG
Sbjct: 160 EEQAGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVG 219
Query: 78 KTAIVEGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFEDRLKKILKEISNNQK 137
KTAI EGLA RI+ G+VP GTKYRG+FE R K +LK++ +
Sbjct: 220 KTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTN 279
Query: 138 DIIIFIDELHTMIGTGKVEGS-IDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFE 196
I+ FIDE+HT+IG G G +DA N++KP LS G++ IG+TT E+ EKD A
Sbjct: 280 SIL-FIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALA 338
Query: 197 RRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 253
RRFQKI + EP IEET+ I+ GL+ KYE HH V T A+ AA EL+ +YI+DR +P
Sbjct: 339 RRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLP 395
Score = 194 bits (494), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 118/326 (36%), Positives = 174/326 (53%), Gaps = 18/326 (5%)
Query: 400 KTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRS 459
K V +I +V+R IP + Q +R+ L N+ + L V GQD+AI A++ AI+ +
Sbjct: 418 KKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMA 477
Query: 460 RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519
R+GL +P GSF+F GPTGVGKTE+ LS + ++R DMSE++E+H++SRLI
Sbjct: 478 RAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE---LLRFDMSEYMERHTVSRLI 534
Query: 520 XXXXXXXXXXXXXXLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 579
LT+ V + P++++LLDEIEKA+ DVFNILLQ++D+G LTDN GR
Sbjct: 535 GAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKA 594
Query: 580 NFRNTIIVMTSNLGSDKIKEMEKGDKEII----KLAVMNEVKIYFRPEFINRIDDIIVFR 635
+FRN ++VMT+N G ++E E+ +I M E+K F PEF NR+D+II F
Sbjct: 595 DFRNVVLVMTTNAG---VRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFD 651
Query: 636 YLNRKNILSXXXXXXXXXXXXXXXXXXXXXXSKAALKKISNIGFDLIYGARDVHGCXXXX 695
+L+ I S+ A ++ G+D GAR +
Sbjct: 652 HLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPM------- 704
Query: 696 XXXXXXXXXXXPEANFIFLGDLINKG 721
P AN + G L++ G
Sbjct: 705 -ARVIQDNLKKPLANELLFGSLVDGG 729
>pdb|2DFJ|A Chain A, Crystal Structure Of The Diadenosine Tetraphosphate
Hydrolase From Shigella Flexneri 2a
pdb|2DFJ|B Chain B, Crystal Structure Of The Diadenosine Tetraphosphate
Hydrolase From Shigella Flexneri 2a
Length = 280
Score = 156 bits (395), Expect = 4e-38, Method: Composition-based stats.
Identities = 90/268 (33%), Positives = 130/268 (48%), Gaps = 10/268 (3%)
Query: 687 DVHGCXXXXXXXXXXXXXXXPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHE 746
DVHGC + GDL+ +GP SLD LR V S+ + ++VLGNH+
Sbjct: 8 DVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHD 67
Query: 747 IHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY--YKKYLMIHAGVAKQW 804
+HLL V I++ D +L+APD +L++WLR QPL KK +M HAG+ QW
Sbjct: 68 LHLLAVFAGISRNKPKDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQW 127
Query: 805 TAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTR 864
Q + + VE +L + + +Y NW + L + +L+FI N TR
Sbjct: 128 DLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNNW-----SPELRGLGRLRFITNAFTR 182
Query: 865 TRFCKIDGTIEXXXXXXXXXXXXXXYIPWFDLPNRKTIDITVLFGHWSTL-GLIMKPNII 923
RFC +G ++ PWF +P + ++ FGHW++L G I
Sbjct: 183 MRFCFPNGQLDMYSKESPEEAPAPLK-PWFAIPGPVAEEYSIAFGHWASLEGKGTPEGIY 241
Query: 924 CLDTGCVWGNKLTALCLEDRS-IIQVNN 950
LDTGC WG LT L ED+ +Q +N
Sbjct: 242 ALDTGCCWGGSLTCLRWEDKQYFVQPSN 269
>pdb|2QJC|A Chain A, Crystal Structure Of A Putative Diadenosine
Tetraphosphatase
Length = 262
Score = 40.8 bits (94), Expect = 0.004, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Query: 687 DVHGCXXXXXXXXXXXXXXXPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHE 746
D+HGC + +GDL+NKGP S +R++ + Y+ VLGNH+
Sbjct: 26 DIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRLGAYS--VLGNHD 83
Score = 33.1 bits (74), Expect = 0.69, Method: Composition-based stats.
Identities = 20/46 (43%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Query: 905 TVLFGHWSTLGLI--MKPNIICLDTGCVWGNKLTALCLEDRSIIQV 948
TV+FGH + GL KP I LD+ CV+G +L+A II V
Sbjct: 199 TVVFGHDARRGLQEQYKPLAIGLDSRCVYGGRLSAAVFPGGCIISV 244
>pdb|1S70|A Chain A, Complex Between Protein Ser/thr Phosphatase-1 (delta) And
The Myosin Phosphatase Targeting Subunit 1 (mypt1)
Length = 330
Score = 40.0 bits (92), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/122 (27%), Positives = 57/122 (46%), Gaps = 16/122 (13%)
Query: 707 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHEIHLLDVLININKKSKL 762
PEAN++FLGD +++G QSL+T L + Y ++ L GNHE ++ + + K
Sbjct: 85 PEANYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECK- 143
Query: 763 DTFDDILDAPDKKKLVSWLRTQPL-AIYYKKYLMIHAGVAKQWTAQQTIKLSHQVEKILR 821
F+ L K P+ AI +K H G++ + + Q+ +I+R
Sbjct: 144 RRFNIKL----WKTFTDCFNCLPIAAIVDEKIFCCHGGLSPDLQSME------QIRRIMR 193
Query: 822 TS 823
+
Sbjct: 194 PT 195
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 38.9 bits (89), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 44/159 (27%), Positives = 70/159 (44%), Gaps = 31/159 (19%)
Query: 62 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEF 121
R+ + +L G PG GK+ + + +A +K+ GE
Sbjct: 57 RKPTSGILLYGPPGTGKSYLAKAVATE------------ANSTFFSVSSSDLVSKWMGES 104
Query: 122 EDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----------SR 171
E +L K L ++ K IIFIDE+ + GT + EG +A +K EL S+
Sbjct: 105 E-KLVKQLFAMARENKPSIIFIDEVDALTGT-RGEGESEASRRIKTELLVQMNGVGNDSQ 162
Query: 172 GELHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDI 209
G L +GAT + + D+A RRF+ +I + PD+
Sbjct: 163 GVL-VLGATNIP-----WQLDSAIRRRFERRIYIPLPDL 195
>pdb|4G9J|A Chain A, Protein SerTHR PHOSPHATASE-1 In Complex With
Cell-Permeable Peptide
pdb|4G9J|B Chain B, Protein SerTHR PHOSPHATASE-1 In Complex With
Cell-Permeable Peptide
Length = 331
Score = 38.5 bits (88), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 30/129 (23%)
Query: 707 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHEIHLLDVLININKKSK- 761
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE ++ + + K
Sbjct: 84 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKR 143
Query: 762 ------LDTFDDILDAPDKKKLVSWLRTQPL-AIYYKKYLMIHAGVAKQWTAQQTIKLSH 814
TF D + P+ AI +K H G++ + +
Sbjct: 144 RYNIKLWKTFTDCFNC------------LPIAAIVDEKIFCCHGGLSPDLQSME------ 185
Query: 815 QVEKILRTS 823
Q+ +I+R +
Sbjct: 186 QIRRIMRPT 194
>pdb|2O8A|A Chain A, Rat Pp1cgamma Complexed With Mouse Inhibitor-2
pdb|2O8A|B Chain B, Rat Pp1cgamma Complexed With Mouse Inhibitor-2
pdb|2O8G|A Chain A, Rat Pp1c Gamma Complexed With Mouse Inhibitor-2
pdb|2O8G|B Chain B, Rat Pp1c Gamma Complexed With Mouse Inhibitor-2
Length = 329
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 707 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHEI 747
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE
Sbjct: 89 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 133
>pdb|1JK7|A Chain A, Crystal Structure Of The Tumor-Promoter Okadaic Acid Bound
To Protein Phosphatase-1
pdb|1IT6|A Chain A, Crystal Structure Of The Complex Between Calyculin A And
The Catalytic Subunit Of Protein Phosphatase 1
pdb|1IT6|B Chain B, Crystal Structure Of The Complex Between Calyculin A And
The Catalytic Subunit Of Protein Phosphatase 1
pdb|2BCD|A Chain A, X-Ray Crystal Structure Of Protein Phosphatase-1 With The
Marine Toxin Motuporin Bound
pdb|2BDX|A Chain A, X-Ray Crystal Structure Of Dihydromicrocystin-La Bound To
Protein Phosphatase-1
Length = 323
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 707 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHEI 747
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE
Sbjct: 83 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 127
>pdb|1FJM|A Chain A, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
1) Complexed With Microcystin-Lr Toxin
pdb|1FJM|B Chain B, Protein SerineTHREONINE PHOSPHATASE-1 (Alpha Isoform, Type
1) Complexed With Microcystin-Lr Toxin
Length = 330
Score = 38.5 bits (88), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 30/129 (23%)
Query: 707 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHEIHLLDVLININKKSK- 761
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE ++ + + K
Sbjct: 83 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKR 142
Query: 762 ------LDTFDDILDAPDKKKLVSWLRTQPL-AIYYKKYLMIHAGVAKQWTAQQTIKLSH 814
TF D + P+ AI +K H G++ + +
Sbjct: 143 RYNIKLWKTFTDCFNC------------LPIAAIVDEKIFCCHGGLSPDLQSME------ 184
Query: 815 QVEKILRTS 823
Q+ +I+R +
Sbjct: 185 QIRRIMRPT 193
>pdb|3N5U|A Chain A, Crystal Structure Of An Rb C-Terminal Peptide Bound To The
Catalytic Subunit Of Pp1
pdb|3N5U|B Chain B, Crystal Structure Of An Rb C-Terminal Peptide Bound To The
Catalytic Subunit Of Pp1
Length = 300
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 707 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHEI 747
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE
Sbjct: 83 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 127
>pdb|3EGG|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGG|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Spinophilin
pdb|3EGH|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3EGH|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1), The Pp1 Binding And Pdz Domains Of
Spinophilin And The Small Natural Molecular Toxin
Nodularin-R
pdb|3HVQ|A Chain A, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
pdb|3HVQ|B Chain B, Crystal Structure Of A Complex Between Protein Phosphatase
1 Alpha (Pp1) And The Pp1 Binding And Pdz Domains Of
Neurabin
Length = 329
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 30/129 (23%)
Query: 707 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHEIHLLDVLININKKSK- 761
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE ++ + + K
Sbjct: 82 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDECKR 141
Query: 762 ------LDTFDDILDAPDKKKLVSWLRTQPL-AIYYKKYLMIHAGVAKQWTAQQTIKLSH 814
TF D + P+ AI +K H G++ + +
Sbjct: 142 RYNIKLWKTFTDCFNC------------LPIAAIVDEKIFCCHGGLSPDLQSME------ 183
Query: 815 QVEKILRTS 823
Q+ +I+R +
Sbjct: 184 QIRRIMRPT 192
>pdb|1U32|A Chain A, Crystal Structure Of A Protein Phosphatase-1: Calcineurin
Hybrid Bound To Okadaic Acid
Length = 293
Score = 38.5 bits (88), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 707 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHEI 747
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE
Sbjct: 78 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 122
>pdb|3V4Y|A Chain A, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|C Chain C, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|E Chain E, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
pdb|3V4Y|G Chain G, Crystal Structure Of The First Nuclear Pp1 Holoenzyme
Length = 306
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 707 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHEI 747
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE
Sbjct: 82 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 126
>pdb|3E7A|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Nodularin-R
pdb|3E7A|B Chain B, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Nodularin-R
pdb|3E7B|A Chain A, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Inhibitor Tautomycin
pdb|3E7B|B Chain B, Crystal Structure Of Protein Phosphatase-1 Bound To The
Natural Toxin Inhibitor Tautomycin
Length = 299
Score = 38.5 bits (88), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 29/45 (64%), Gaps = 4/45 (8%)
Query: 707 PEANFIFLGDLINKGPQSLDT--LRMVYSMRNYAKIVL--GNHEI 747
PE+N++FLGD +++G QSL+T L + Y ++ L GNHE
Sbjct: 82 PESNYLFLGDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHEC 126
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 38.1 bits (87), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 31/159 (19%)
Query: 62 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEF 121
R+ + +L G PG GK+ + + +A +K+ GE
Sbjct: 48 RKPTSGILLYGPPGTGKSYLAKAVATE------------ANSTFFSVSSSDLVSKWMGES 95
Query: 122 EDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----------SR 171
E +L K L ++ K IIFID++ + GT + EG +A +K EL S+
Sbjct: 96 E-KLVKQLFAMARENKPSIIFIDQVDALTGT-RGEGESEASRRIKTELLVQMNGVGNDSQ 153
Query: 172 GELHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDI 209
G L +GAT + + D+A RRF+ +I + PD+
Sbjct: 154 GVL-VLGATNIP-----WQLDSAIRRRFERRIYIPLPDL 186
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 37.4 bits (85), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 31/159 (19%)
Query: 62 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEF 121
R+ + +L G PG GK+ + + +A +K+ GE
Sbjct: 66 RKPTSGILLYGPPGTGKSYLAKAVATE------------ANSTFFSVSSSDLVSKWMGES 113
Query: 122 EDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----------SR 171
E +L K L ++ K IIFID++ + GT + EG +A +K EL S+
Sbjct: 114 E-KLVKQLFAMARENKPSIIFIDQVDALTGT-RGEGESEASRRIKTELLVQMNGVGNDSQ 171
Query: 172 GELHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDI 209
G L +GAT + + D+A RRF+ +I + PD+
Sbjct: 172 GVL-VLGATNIP-----WQLDSAIRRRFERRIYIPLPDL 204
>pdb|3FGA|C Chain C, Structural Basis Of Pp2a And Sgo Interaction
Length = 309
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 707 PEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHE 746
P+ N++F+GD +N+G S++T+ ++ ++ R I+ GNHE
Sbjct: 76 PDTNYLFMGDYVNRGYYSVETVTLLVALKVRYRERITILRGNHE 119
>pdb|2IAE|C Chain C, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme.
pdb|2IAE|F Chain F, Crystal Structure Of A Protein Phosphatase 2a (Pp2a)
Holoenzyme
Length = 309
Score = 37.4 bits (85), Expect = 0.038, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 707 PEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHE 746
P+ N++F+GD +N+G S++T+ ++ ++ R I+ GNHE
Sbjct: 76 PDTNYLFMGDYVNRGYYSVETVTLLVALKVRYRERITILRGNHE 119
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 438 LCKRVVGQDEAISAVSNAIRRS--RSGLSDAKR---PYGSFMFLGPTGVGKTELCKTLSA 492
L K ++GQD A +V+ A+R R L++ R + + +GPTGVGKTE+ + L A
Sbjct: 12 LDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRL-A 70
Query: 493 CIFNNEESIIRIDMSEFIE 511
+ N I+++ ++F E
Sbjct: 71 KLANA--PFIKVEATKFTE 87
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 438 LCKRVVGQDEAISAVSNAIRRS--RSGLSDAKR---PYGSFMFLGPTGVGKTELCKTLSA 492
L K ++GQD A +V+ A+R R L++ R + + +GPTGVGKTE+ + L A
Sbjct: 19 LDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRL-A 77
Query: 493 CIFNNEESIIRIDMSEFIE 511
+ N I+++ ++F E
Sbjct: 78 KLANA--PFIKVEATKFTE 94
>pdb|2ZBM|A Chain A, Crystal Structure Of I115m Mutant Cold-Active Protein
Tyrosine Phosphatase
Length = 336
Score = 37.0 bits (84), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 708 EANFIFLGDLINKGPQSLDTLRMVYSMRNYAK-------IVLGNHEIHLLDVLININKKS 760
E + + GD+ ++G Q + L +Y + A+ +++GNHE +L + +
Sbjct: 106 EGHMVMTGDMFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQ- 164
Query: 761 KLDTFDDILDAPDKK------KLVSWLRTQPLAIYYKKYLMIHAGVAKQWTAQQ 808
+ D +++ P K ++ WLR++ I L +H G++ +W +++
Sbjct: 165 RYDIATTLINRPYNKLYGADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISRE 218
>pdb|1V73|A Chain A, Crystal Structure Of Cold-Active Protein-Tyrosine
Phosphatase Of A Psychrophile Shewanella Sp
Length = 342
Score = 37.0 bits (84), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 708 EANFIFLGDLINKGPQSLDTLRMVYSMRNYAK-------IVLGNHEIHLLDVLININKKS 760
E + + GD+ ++G Q + L +Y + A+ +++GNHE +L + +
Sbjct: 106 EGHMVMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQ- 164
Query: 761 KLDTFDDILDAPDKK------KLVSWLRTQPLAIYYKKYLMIHAGVAKQWTAQQ 808
+ D +++ P K ++ WLR++ I L +H G++ +W +++
Sbjct: 165 RYDIATTLINRPYNKLYGADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISRE 218
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 27/79 (34%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 438 LCKRVVGQDEAISAVSNAIRRS--RSGLSDAKR---PYGSFMFLGPTGVGKTELCKTLSA 492
L K ++GQD A +V+ A+R R L++ R + + +GPTGVGKTE+ + L A
Sbjct: 13 LDKHIIGQDNAKRSVAIALRNRWRRMQLNEELRHEVTPKNILMIGPTGVGKTEIARRL-A 71
Query: 493 CIFNNEESIIRIDMSEFIE 511
+ N I+++ ++F E
Sbjct: 72 KLANA--PFIKVEATKFTE 88
>pdb|2Z72|A Chain A, New Structure Of Cold-Active Protein Tyrosine Phosphatase
At 1.1 Angstrom
Length = 342
Score = 37.0 bits (84), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 24/114 (21%), Positives = 54/114 (47%), Gaps = 14/114 (12%)
Query: 708 EANFIFLGDLINKGPQSLDTLRMVYSMRNYAK-------IVLGNHEIHLLDVLININKKS 760
E + + GD+ ++G Q + L +Y + A+ +++GNHE +L + +
Sbjct: 106 EGHMVMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNHEQMVLGGDLRYVHQ- 164
Query: 761 KLDTFDDILDAPDKK------KLVSWLRTQPLAIYYKKYLMIHAGVAKQWTAQQ 808
+ D +++ P K ++ WLR++ I L +H G++ +W +++
Sbjct: 165 RYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISRE 218
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 36.6 bits (83), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 31/53 (58%)
Query: 35 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQ 87
EK R LD V+G+D+ I+R ++R++ + + G PG GKTA LA+
Sbjct: 8 VEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Score = 30.0 bits (66), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 30/123 (24%), Positives = 48/123 (39%), Gaps = 29/123 (23%)
Query: 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIF--NNEE 499
VVGQDE I + + R P+ +F GP G GKT L+ +F N +
Sbjct: 19 VVGQDEVIQRLKGYVERKNI-------PH--LLFSGPPGTGKTATAIALARDLFGENWRD 69
Query: 500 SIIRIDMSEF----IEKHSISRLIXXXXXXXXXXXXXXLTEIVRRKPYSLILLDEIEKAN 555
+ I ++ S+ + +H I T + P+ +I LDE +
Sbjct: 70 NFIEMNASDERGIDVVRHKIKEFAR--------------TAPIGGAPFKIIFLDEADALT 115
Query: 556 SDV 558
+D
Sbjct: 116 ADA 118
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 36.6 bits (83), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 70/159 (44%), Gaps = 31/159 (19%)
Query: 62 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEF 121
R+ + +L G PG GK+ + + +A +K+ GE
Sbjct: 81 RKPTSGILLYGPPGTGKSYLAKAVATE------------ANSTFFSVSSSDLVSKWMGES 128
Query: 122 EDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----------SR 171
E +L K L ++ K IIFID++ + GT + EG +A +K EL S+
Sbjct: 129 E-KLVKQLFAMARENKPSIIFIDQVDALTGT-RGEGESEASRRIKTELLVQMNGVGNDSQ 186
Query: 172 GELHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDI 209
G L +GAT + + D+A RRF+ +I + PD+
Sbjct: 187 GVL-VLGATNIP-----WQLDSAIRRRFERRIYIPLPDL 219
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 36.6 bits (83), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 36 EKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQ 87
EK R LD V+G+D+ I+R ++R++ + + G PG GKTA LA+
Sbjct: 9 EKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALAR 60
Score = 30.4 bits (67), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 52/132 (39%), Gaps = 29/132 (21%)
Query: 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIF--NNEE 499
VVGQDE I + + R P+ +F GP G GKT L+ +F N +
Sbjct: 19 VVGQDEVIQRLKGYVERKNI-------PH--LLFSGPPGTGKTATAIALARDLFGENWRD 69
Query: 500 SIIRIDMSEF----IEKHSISRLIXXXXXXXXXXXXXXLTEIVRRKPYSLILLDEIEKAN 555
+ I ++ S+ + +H I T + P+ +I LDE +
Sbjct: 70 NFIEMNASDERGIDVVRHKIKEFAR--------------TAPIGGAPFKIIFLDEADALT 115
Query: 556 SDVFNILLQILD 567
+D L + ++
Sbjct: 116 ADAQAALRRTME 127
>pdb|1TCO|A Chain A, Ternary Complex Of A Calcineurin A Fragment, Calcineurin
B, Fkbp12 And The Immunosuppressant Drug Fk506
(tacrolimus)
Length = 375
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 711 FIFLGDLINKGPQSLDTLRMVYSMR-NYAKIVL---GNHEIHLLDVLININKKSKLD--- 763
++FLGD +++G S++ + +++++ Y K + GNHE L ++ K+
Sbjct: 96 YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE 155
Query: 764 -TFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQ 803
+D +DA D L + + Q +L +H G++ +
Sbjct: 156 RVYDACMDAFDCLPLAALMNQQ--------FLCVHGGLSPE 188
>pdb|2JOG|A Chain A, Structure Of The Calcineurin-Nfat Complex
Length = 327
Score = 35.8 bits (81), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 711 FIFLGDLINKGPQSLDTLRMVYSMR-NYAKIVL---GNHEIHLLDVLININKKSKLD--- 763
++FLGD +++G S++ + +++++ Y K + GNHE L ++ K+
Sbjct: 93 YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE 152
Query: 764 -TFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQ 803
+D +DA D L + + Q +L +H G++ +
Sbjct: 153 RVYDACMDAFDCLPLAALMNQQ--------FLCVHGGLSPE 185
>pdb|1MF8|A Chain A, Crystal Structure Of Human Calcineurin Complexed With
Cyclosporin A And Human Cyclophilin
Length = 373
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 711 FIFLGDLINKGPQSLDTLRMVYSMR-NYAKIVL---GNHEIHLLDVLININKKSKLD--- 763
++FLGD +++G S++ + +++++ Y K + GNHE L ++ K+
Sbjct: 94 YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE 153
Query: 764 -TFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQ 803
+D +DA D L + + Q +L +H G++ +
Sbjct: 154 RVYDACMDAFDCLPLAALMNQQ--------FLCVHGGLSPE 186
>pdb|1M63|A Chain A, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
pdb|1M63|E Chain E, Crystal Structure Of Calcineurin-Cyclophilin-Cyclosporin
Shows Common But Distinct Recognition Of
Immunophilin-Drug Complexes
Length = 372
Score = 35.8 bits (81), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 711 FIFLGDLINKGPQSLDTLRMVYSMR-NYAKIVL---GNHEIHLLDVLININKKSKLD--- 763
++FLGD +++G S++ + +++++ Y K + GNHE L ++ K+
Sbjct: 113 YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE 172
Query: 764 -TFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQ 803
+D +DA D L + + Q +L +H G++ +
Sbjct: 173 RVYDACMDAFDCLPLAALMNQQ--------FLCVHGGLSPE 205
>pdb|3LL8|A Chain A, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
pdb|3LL8|C Chain C, Crystal Structure Of Calcineurin In Complex With Akap79
Peptide
Length = 357
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 711 FIFLGDLINKGPQSLDTLRMVYSMR-NYAKIVL---GNHEIHLLDVLININKKSKLD--- 763
++FLGD +++G S++ + +++++ Y K + GNHE L ++ K+
Sbjct: 100 YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE 159
Query: 764 -TFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQ 803
+D +DA D L + + Q +L +H G++ +
Sbjct: 160 RVYDACMDAFDCLPLAALMNQQ--------FLCVHGGLSPE 192
>pdb|1AUI|A Chain A, Human Calcineurin Heterodimer
Length = 521
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 711 FIFLGDLINKGPQSLDTLRMVYSMR-NYAKIVL---GNHEIHLLDVLININKKSKLD--- 763
++FLGD +++G S++ + +++++ Y K + GNHE L ++ K+
Sbjct: 113 YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE 172
Query: 764 -TFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQ 803
+D +DA D L + + Q +L +H G++ +
Sbjct: 173 RVYDACMDAFDCLPLAALMNQQ--------FLCVHGGLSPE 205
>pdb|2P6B|A Chain A, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
pdb|2P6B|C Chain C, Crystal Structure Of Human Calcineurin In Complex With
Pvivit Peptide
Length = 383
Score = 35.8 bits (81), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/101 (22%), Positives = 49/101 (48%), Gaps = 16/101 (15%)
Query: 711 FIFLGDLINKGPQSLDTLRMVYSMR-NYAKIVL---GNHEIHLLDVLININKKSKLD--- 763
++FLGD +++G S++ + +++++ Y K + GNHE L ++ K+
Sbjct: 116 YLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFTFKQECKIKYSE 175
Query: 764 -TFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQ 803
+D +DA D L + + Q +L +H G++ +
Sbjct: 176 RVYDACMDAFDCLPLAALMNQQ--------FLCVHGGLSPE 208
>pdb|2IE4|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|C Chain C, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|F Chain F, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3DW8|C Chain C, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3DW8|F Chain F, Structure Of A Protein Phosphatase 2a Holoenzyme With B55
Subunit
pdb|3K7V|C Chain C, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|C Chain C, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 309
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 707 PEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHE 746
P+ N++F+GD +++G S++T+ ++ ++ R I+ GNHE
Sbjct: 76 PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHE 119
>pdb|2IE3|C Chain C, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
Length = 309
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 707 PEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHE 746
P+ N++F+GD +++G S++T+ ++ ++ R I+ GNHE
Sbjct: 76 PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHE 119
>pdb|3P71|C Chain C, Crystal Structure Of The Complex Of Lcmt-1 And Pp2a
Length = 304
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 707 PEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHE 746
P+ N++F+GD +++G S++T+ ++ ++ R I+ GNHE
Sbjct: 76 PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHE 119
>pdb|3C5W|C Chain C, Complex Between Pp2a-Specific Methylesterase Pme-1 And
Pp2a Core Enzyme
Length = 310
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 707 PEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHE 746
P+ N++F+GD +++G S++T+ ++ ++ R I+ GNHE
Sbjct: 77 PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHE 120
>pdb|2NYL|C Chain C, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYL|F Chain F, Crystal Structure Of Protein Phosphatase 2a (Pp2a)
Holoenzyme With The Catalytic Subunit Carboxyl Terminus
Truncated
pdb|2NYM|C Chain C, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
pdb|2NYM|F Chain F, Crystal Structure Of Protein Phosphatase 2a (Pp2a) With
C-Terminus Truncated Catalytic Subunit
Length = 293
Score = 35.4 bits (80), Expect = 0.14, Method: Composition-based stats.
Identities = 14/44 (31%), Positives = 29/44 (65%), Gaps = 4/44 (9%)
Query: 707 PEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHE 746
P+ N++F+GD +++G S++T+ ++ ++ R I+ GNHE
Sbjct: 75 PDTNYLFMGDYVDRGYYSVETVTLLVALKVRYRERITILRGNHE 118
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 438 LCKRVVGQDEAISAVSNAIRRS--RSGLSDAKR---PYGSFMFLGPTGVGKTELCKTLSA 492
L + ++GQ +A AV+ A+R R L + R + + +GPTGVGKTE+ + L A
Sbjct: 13 LDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRL-A 71
Query: 493 CIFNNEESIIRIDMSEFIE 511
+ N I+++ ++F E
Sbjct: 72 KLANA--PFIKVEATKFTE 88
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 34.7 bits (78), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 68/159 (42%), Gaps = 28/159 (17%)
Query: 69 VLIGEPGVGKTAIVEGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFEDRLKKI 128
+L G PG GK+ + + +A N + +K+ GE E +L K
Sbjct: 171 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV-----------SKWLGESE-KLVKN 218
Query: 129 LKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE---------LSRGELHCIGA 179
L +++ K IIFIDE+ ++ G+ + E +A +K E + + +GA
Sbjct: 219 LFQLARENKPSIIFIDEIDSLCGS-RSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 277
Query: 180 TTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILR 217
T + D+A RRF+K I + P+ ++ R
Sbjct: 278 TNIPWVL-----DSAIRRRFEKRIYIPLPEAHARAAMFR 311
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 34.3 bits (77), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 8/79 (10%)
Query: 438 LCKRVVGQDEAISAVSNAIRRS--RSGLSDAKR---PYGSFMFLGPTGVGKTELCKTLSA 492
L + ++GQ +A AV+ A+R R L + R + + +GPTGVGKTE+ + L A
Sbjct: 13 LDQHIIGQADAKRAVAIALRNRWRRXQLQEPLRHEVTPKNILXIGPTGVGKTEIARRL-A 71
Query: 493 CIFNNEESIIRIDMSEFIE 511
+ N I+++ ++F E
Sbjct: 72 KLANA--PFIKVEATKFTE 88
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 33.9 bits (76), Expect = 0.39, Method: Composition-based stats.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 501
VVGQ+ ++A++N GLS R + +++F G GVGKT + + L+ + N E I
Sbjct: 25 VVGQEHVLTALAN-------GLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGI 75
Query: 502 IRI-----DMSEFIEKHSISRLIXX-XXXXXXXXXXXXLTEIVRRKP----YSLILLDEI 551
D IE+ LI L + V+ P + + L+DE+
Sbjct: 76 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 135
Query: 552 EKANSDVFNILLQILDD 568
+ FN LL+ L++
Sbjct: 136 HMLSRHSFNALLKTLEE 152
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 33.9 bits (76), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 434 IENLLCKRVVGQDEA----ISAVSNAIRRSRSGLSDAKRPYG--SFMFLGPTGVGKTELC 487
I N L V+GQ++A AV N +R R+G + G + + +GPTG GKT L
Sbjct: 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 68
Query: 488 KTLS 491
+TL+
Sbjct: 69 ETLA 72
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 33.9 bits (76), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 434 IENLLCKRVVGQDEA----ISAVSNAIRRSRSGLSDAKRPYG--SFMFLGPTGVGKTELC 487
I N L V+GQ++A AV N +R R+G + G + + +GPTG GKT L
Sbjct: 9 IRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLA 68
Query: 488 KTLS 491
+TL+
Sbjct: 69 ETLA 72
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 33.9 bits (76), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 42/79 (53%), Gaps = 8/79 (10%)
Query: 438 LCKRVVGQDEAISAVSNAIRRS--RSGLSDAKR---PYGSFMFLGPTGVGKTELCKTLSA 492
L + ++GQ +A AV+ A+R R L + R + + +GPTGVGKTE+ + L+
Sbjct: 13 LDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAK 72
Query: 493 CIFNNEESIIRIDMSEFIE 511
I+++ ++F E
Sbjct: 73 L---ANAPFIKVEATKFTE 88
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 33.5 bits (75), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 65/151 (43%), Gaps = 30/151 (19%)
Query: 69 VLIGEPGVGKTAIVEGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFEDRLKKI 128
+L G PG GK+ + + +A N + +K+ GE E +L K
Sbjct: 49 LLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV-----------SKWLGESE-KLVKN 96
Query: 129 LKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE---------LSRGELHCIGA 179
L +++ K IIFIDE+ ++ G+ + E +A +K E + + +GA
Sbjct: 97 LFQLARENKPSIIFIDEIDSLCGS-RSENESEAARRIKTEFLVQMQGVGVDNDGILVLGA 155
Query: 180 TTLNEYRQYIEKDAAFERRFQK---ILVEEP 207
T + D+A RRF+K I + EP
Sbjct: 156 TNIPWVL-----DSAIRRRFEKRIYIPLPEP 181
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 33.5 bits (75), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 469 PYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH 513
P G ++ GP G GKT L K A + + + IR++ SEF+ K+
Sbjct: 206 PRGVLLY-GPPGTGKTMLVK---AVANSTKAAFIRVNGSEFVHKY 246
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 33.5 bits (75), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 35 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIIN 91
EK R +LD ++G++ ++R ++ S + + G PGVGKT LA+ +
Sbjct: 16 VEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFG 72
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 33.1 bits (74), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 22/49 (44%)
Query: 462 GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510
LSD R + GP G GK C L IF ++ID+ +F+
Sbjct: 28 SLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFV 76
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 501
VVGQ+ ++A++N GLS R + +++F G GVGKT + + L+ + N E I
Sbjct: 21 VVGQEHVLTALAN-------GLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGI 71
Query: 502 IR-----IDMSEFIEKHSISRLIXX-XXXXXXXXXXXXLTEIVRRKP----YSLILLDEI 551
D IE+ LI L + V+ P + + L+DE+
Sbjct: 72 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 131
Query: 552 EKANSDVFNILLQILDD 568
+ FN LL+ L++
Sbjct: 132 HMLSRHSFNALLKTLEE 148
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 501
VVGQ+ ++A++N GLS R + +++F G GVGKT + + L+ + N E I
Sbjct: 18 VVGQEHVLTALAN-------GLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGI 68
Query: 502 IR-----IDMSEFIEKHSISRLIXX-XXXXXXXXXXXXLTEIVRRKP----YSLILLDEI 551
D IE+ LI L + V+ P + + L+DE+
Sbjct: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128
Query: 552 EKANSDVFNILLQILDD 568
+ FN LL+ L++
Sbjct: 129 HMLSRHSFNALLKTLEE 145
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 501
VVGQ+ ++A++N GLS R + +++F G GVGKT + + L+ + N E I
Sbjct: 40 VVGQEHVLTALAN-------GLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGI 90
Query: 502 IR-----IDMSEFIEKHSISRLIXX-XXXXXXXXXXXXLTEIVRRKP----YSLILLDEI 551
D IE+ LI L + V+ P + + L+DE+
Sbjct: 91 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 150
Query: 552 EKANSDVFNILLQILDD 568
+ FN LL+ L++
Sbjct: 151 HMLSRHSFNALLKTLEE 167
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 32.3 bits (72), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 501
VVGQ+ ++A++N GLS R + +++F G GVGKT + + L+ + N E I
Sbjct: 40 VVGQEHVLTALAN-------GLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGI 90
Query: 502 IR-----IDMSEFIEKHSISRLIXX-XXXXXXXXXXXXLTEIVRRKP----YSLILLDEI 551
D IE+ LI L + V+ P + + L+DE+
Sbjct: 91 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 150
Query: 552 EKANSDVFNILLQILDD 568
+ FN LL+ L++
Sbjct: 151 HMLSRHSFNALLKTLEE 167
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 32.0 bits (71), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 61/137 (44%), Gaps = 19/137 (13%)
Query: 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 501
VVGQ+ ++A++N GLS R + +++F G GVGKT + + L+ + N E I
Sbjct: 18 VVGQEHVLTALAN-------GLS-LGRIHHAYLFSGTRGVGKTSIARLLAKGL-NCETGI 68
Query: 502 IR-----IDMSEFIEKHSISRLIXX-XXXXXXXXXXXXLTEIVRRKP----YSLILLDEI 551
D IE+ LI L + V+ P + + L+DE+
Sbjct: 69 TATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEV 128
Query: 552 EKANSDVFNILLQILDD 568
+ FN LL+ L++
Sbjct: 129 HMLSRHSFNALLKTLEE 145
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 31.6 bits (70), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 36 EKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRII 90
EK R L ++G + I R Q+ + + + ++ G PG+GKT V LA ++
Sbjct: 13 EKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELL 67
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 45/155 (29%), Positives = 69/155 (44%), Gaps = 31/155 (20%)
Query: 69 VLIGEPGVGKTAIVEGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFEDRLKKI 128
+L G PG GKT + + +A N N +KY GE E +L +
Sbjct: 152 LLFGPPGNGKTMLAKAVAAE-SNATFFNISAASLT-----------SKYVGEGE-KLVRA 198
Query: 129 LKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL--------SRGE--LHCIG 178
L ++ + IIFID++ +++ + EG DA LK E S G+ + +G
Sbjct: 199 LFAVARELQPSIIFIDQVDSLL-CERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMG 257
Query: 179 ATTLNEYRQYIEKDAAFERRF-QKILVEEPDIEET 212
AT + E D A RRF +++ V P+ EET
Sbjct: 258 ATNRPQ-----ELDEAVLRRFIKRVYVSLPN-EET 286
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 31.6 bits (70), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 25/87 (28%)
Query: 69 VLIGEPGVGKTAIVEGLAQR------IINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFE 122
+L G PG GKT I +A +ING P +K GE E
Sbjct: 242 LLYGPPGTGKTLIARAVANETGAFFFLING--PEIM----------------SKLAGESE 283
Query: 123 DRLKKILKEISNNQKDIIIFIDELHTM 149
L+K +E N IIFIDEL +
Sbjct: 284 SNLRKAFEEAEKNAP-AIIFIDELDAI 309
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 25/87 (28%)
Query: 69 VLIGEPGVGKTAIVEGLAQR------IINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFE 122
+L G PG GKT I +A +ING P +K GE E
Sbjct: 242 LLYGPPGTGKTLIARAVANETGAFFFLING--PEIM----------------SKLAGESE 283
Query: 123 DRLKKILKEISNNQKDIIIFIDELHTM 149
L+K +E N IIFIDEL +
Sbjct: 284 SNLRKAFEEAEKNAP-AIIFIDELDAI 309
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 31.2 bits (69), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 25/87 (28%)
Query: 69 VLIGEPGVGKTAIVEGLAQR------IINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFE 122
+L G PG GKT I +A +ING P +K GE E
Sbjct: 242 LLYGPPGTGKTLIARAVANETGAFFFLING--PEIM----------------SKLAGESE 283
Query: 123 DRLKKILKEISNNQKDIIIFIDELHTM 149
L+K +E N IIFIDEL +
Sbjct: 284 SNLRKAFEEAEKNAP-AIIFIDELDAI 309
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 25/87 (28%)
Query: 69 VLIGEPGVGKTAIVEGLAQR------IINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFE 122
+L G PG GKT I +A +ING P +K GE E
Sbjct: 242 LLYGPPGTGKTLIARAVANETGAFFFLING--PEIM----------------SKLAGESE 283
Query: 123 DRLKKILKEISNNQKDIIIFIDELHTM 149
L+K +E N IIFIDEL +
Sbjct: 284 SNLRKAFEEAEKNAP-AIIFIDELDAI 309
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 25/87 (28%)
Query: 69 VLIGEPGVGKTAIVEGLAQR------IINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFE 122
+L G PG GKT I +A +ING P +K GE E
Sbjct: 242 LLYGPPGTGKTLIARAVANETGAFFFLING--PEIM----------------SKLAGESE 283
Query: 123 DRLKKILKEISNNQKDIIIFIDELHTM 149
L+K +E N IIFIDEL +
Sbjct: 284 SNLRKAFEEAEKNAP-AIIFIDELDAI 309
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 31.2 bits (69), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 35/87 (40%), Gaps = 25/87 (28%)
Query: 69 VLIGEPGVGKTAIVEGLAQR------IINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFE 122
+L G PG GKT I +A +ING P +K GE E
Sbjct: 242 LLYGPPGTGKTLIARAVANETGAFFFLING--PEIM----------------SKLAGESE 283
Query: 123 DRLKKILKEISNNQKDIIIFIDELHTM 149
L+K +E N IIFIDEL +
Sbjct: 284 SNLRKAFEEAEKNAP-AIIFIDELDAI 309
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 30.8 bits (68), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 36/143 (25%), Positives = 62/143 (43%), Gaps = 25/143 (17%)
Query: 69 VLIGEPGVGKTAIVEGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFEDRLKKI 128
+L G PG GKT I + +A + +K+ GE E ++ +
Sbjct: 121 LLFGPPGTGKTLIGKCIASQ------------SGATFFSISASSLTSKWVGEGE-KMVRA 167
Query: 129 LKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQY 188
L ++ Q+ +IFIDE+ +++ + + +G ++ +K E + GATT +E R
Sbjct: 168 LFAVARCQQPAVIFIDEIDSLL-SQRGDGEHESSRRIKTEFL---VQLDGATTSSEDRIL 223
Query: 189 I--------EKDAAFERRFQKIL 203
+ E D A RR K L
Sbjct: 224 VVGATNRPQEIDEAARRRLVKRL 246
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 30.4 bits (67), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 39/167 (23%), Positives = 70/167 (41%), Gaps = 28/167 (16%)
Query: 69 VLIGEPGVGKTAIVEGLAQRIINGEVPNXXXXXXXXXXXXXXXXXGTKYRGEFEDRLKKI 128
+L G PG GKT + E +A R N +V G K E + +++
Sbjct: 54 ILWGPPGTGKTTLAEVIA-RYANADV-----------ERISAVTSGVK---EIREAIERA 98
Query: 129 LKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQY 188
++ N + I+F+DE+H + + + P + G + IGATT N
Sbjct: 99 -RQNRNAGRRTILFVDEVHRFNKSQQ--------DAFLPHIEDGTITFIGATTENP---S 146
Query: 189 IEKDAAFERRFQKILVEEPDIEETISIL-RGLQKKYEVHHGVEITDP 234
E ++A R + L++ E+ +L + ++ K + G +I P
Sbjct: 147 FELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLP 193
>pdb|3EHN|A Chain A, Bt1043 With N-Acetyllactosamine
pdb|3EHN|B Chain B, Bt1043 With N-Acetyllactosamine
Length = 532
Score = 30.0 bits (66), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 67/151 (44%), Gaps = 18/151 (11%)
Query: 729 RMVYSMRN-YAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPL- 786
RM Y+ +N Y++I L +EI+ I K S + IL+ + + ++WLR +
Sbjct: 87 RMNYAYQNFYSQIFLPWNEIY------EIAKDSDSPSEQAILEIANIVRNIAWLRATDVF 140
Query: 787 -AIYYKKYLMIHAGVAKQWTAQQTI------KLSHQVEKILRTSYWKNLFFKL-YNHNSI 838
I Y +A ++ +Q+ + LS VE + SY + L YN N
Sbjct: 141 GPIAYNS--AGDGSIAPKFDSQEVVYRSMLADLSKSVELLNTISYSVMAQYDLIYNGNVQ 198
Query: 839 NWDNHLHTIHLNTIDKLQFIINTLTRTRFCK 869
NW +++ L + ++ FI TL + K
Sbjct: 199 NWVKLANSLMLRIVVRVHFIDETLAKEYITK 229
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.138 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,668,947
Number of Sequences: 62578
Number of extensions: 886948
Number of successful extensions: 2892
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 2765
Number of HSP's gapped (non-prelim): 144
length of query: 951
length of database: 14,973,337
effective HSP length: 108
effective length of query: 843
effective length of database: 8,214,913
effective search space: 6925171659
effective search space used: 6925171659
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)