Query psy14504
Match_columns 951
No_of_seqs 673 out of 5577
Neff 9.0
Searched_HMMs 46136
Date Fri Aug 16 21:31:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14504.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14504hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0542 clpA ATP-binding subun 100.0 9E-100 2E-104 871.2 59.5 634 11-728 137-775 (786)
2 PRK10865 protein disaggregatio 100.0 4E-86 8.6E-91 802.5 67.8 693 21-727 155-848 (857)
3 TIGR03345 VI_ClpV1 type VI sec 100.0 5.1E-85 1.1E-89 789.3 67.8 674 23-724 166-847 (852)
4 TIGR03346 chaperone_ClpB ATP-d 100.0 9.9E-84 2.1E-88 786.7 72.2 695 21-727 150-845 (852)
5 CHL00095 clpC Clp protease ATP 100.0 1E-80 2.3E-85 758.6 65.4 632 22-727 157-801 (821)
6 PRK11034 clpA ATP-dependent Cl 100.0 1.4E-77 2.9E-82 709.3 52.1 569 23-727 165-735 (758)
7 TIGR02639 ClpA ATP-dependent C 100.0 2E-77 4.4E-82 722.3 54.2 568 22-725 160-729 (731)
8 KOG1051|consensus 100.0 1.2E-70 2.5E-75 638.8 40.6 671 21-725 163-850 (898)
9 TIGR00668 apaH bis(5'-nucleosy 100.0 2.1E-58 4.6E-63 476.3 24.3 263 682-950 3-268 (279)
10 cd07422 MPP_ApaH Escherichia c 100.0 1.2E-53 2.7E-58 443.8 23.2 253 683-941 2-257 (257)
11 PRK00166 apaH diadenosine tetr 100.0 4.7E-53 1E-57 444.7 24.6 263 682-950 3-268 (275)
12 KOG0733|consensus 100.0 3.1E-48 6.7E-53 419.6 31.8 453 42-651 188-693 (802)
13 KOG0730|consensus 100.0 5.2E-42 1.1E-46 378.4 32.6 407 62-692 215-645 (693)
14 TIGR01243 CDC48 AAA family ATP 100.0 1.2E-34 2.7E-39 352.1 35.2 445 39-691 173-664 (733)
15 KOG0736|consensus 100.0 8.3E-34 1.8E-38 315.7 35.2 437 45-690 402-886 (953)
16 KOG0735|consensus 100.0 3.6E-33 7.8E-38 307.4 31.0 386 63-650 429-848 (952)
17 COG0466 Lon ATP-dependent Lon 100.0 4.8E-31 1E-35 294.4 32.0 412 210-702 126-557 (782)
18 PRK13625 bis(5'-nucleosyl)-tet 100.0 3.2E-32 7E-37 286.1 17.8 208 682-950 3-232 (245)
19 cd07413 MPP_PA3087 Pseudomonas 100.0 2.8E-31 6.1E-36 274.3 16.3 193 683-943 2-219 (222)
20 TIGR00382 clpX endopeptidase C 100.0 1.9E-28 4.1E-33 270.5 23.0 260 431-708 68-390 (413)
21 cd07423 MPP_PrpE Bacillus subt 100.0 3E-29 6.6E-34 262.7 15.4 209 682-950 3-229 (234)
22 TIGR00763 lon ATP-dependent pr 100.0 3.2E-27 6.9E-32 287.4 35.4 358 275-702 185-554 (775)
23 PRK10787 DNA-binding ATP-depen 100.0 2.8E-27 6.1E-32 283.9 33.0 357 275-700 187-553 (784)
24 KOG0741|consensus 100.0 2.3E-27 5E-32 253.7 23.1 187 60-268 251-456 (744)
25 PRK11439 pphA serine/threonine 100.0 2.1E-28 4.5E-33 253.0 13.4 201 671-941 8-218 (218)
26 PRK05342 clpX ATP-dependent pr 100.0 2.5E-27 5.4E-32 264.0 21.6 260 431-707 62-383 (412)
27 KOG2004|consensus 99.9 1.4E-25 3.1E-30 248.5 27.2 357 279-704 279-647 (906)
28 cd07421 MPP_Rhilphs Rhilph pho 99.9 8.5E-27 1.8E-31 240.5 14.0 205 681-947 3-298 (304)
29 PHA02239 putative protein phos 99.9 7.2E-26 1.6E-30 234.1 13.9 124 682-805 3-170 (235)
30 COG2256 MGS1 ATPase related to 99.9 3.9E-25 8.4E-30 232.5 18.5 201 32-268 12-221 (436)
31 COG0464 SpoVK ATPases of the A 99.9 9.1E-24 2E-28 247.1 31.6 383 57-652 10-425 (494)
32 COG1222 RPT1 ATP-dependent 26S 99.9 6.8E-25 1.5E-29 226.8 17.5 201 40-268 147-373 (406)
33 PRK09968 serine/threonine-spec 99.9 2.6E-25 5.6E-30 229.2 12.5 199 674-940 9-217 (218)
34 COG1219 ClpX ATP-dependent pro 99.9 6.5E-25 1.4E-29 222.2 14.8 275 430-722 51-391 (408)
35 COG1223 Predicted ATPase (AAA+ 99.9 5.6E-24 1.2E-28 209.2 19.8 189 36-247 113-319 (368)
36 PF07724 AAA_2: AAA domain (Cd 99.9 1.9E-24 4.1E-29 212.8 12.2 152 468-631 1-171 (171)
37 PRK05201 hslU ATP-dependent pr 99.9 1E-23 2.2E-28 228.1 18.6 250 432-708 7-412 (443)
38 cd07424 MPP_PrpA_PrpB PrpA and 99.9 2.5E-24 5.3E-29 221.5 11.7 194 682-940 3-206 (207)
39 KOG0730|consensus 99.9 2.3E-23 4.9E-28 231.3 17.8 203 40-270 430-655 (693)
40 TIGR00390 hslU ATP-dependent p 99.9 4.6E-23 1E-27 223.0 18.8 249 432-708 4-410 (441)
41 KOG0738|consensus 99.9 7.2E-23 1.6E-27 212.7 16.7 210 30-267 198-432 (491)
42 PF05496 RuvB_N: Holliday junc 99.9 4.8E-23 1E-27 204.2 14.3 190 31-264 11-226 (233)
43 cd00144 MPP_PPP_family phospho 99.9 1.4E-23 2.9E-28 220.4 10.2 209 683-940 1-225 (225)
44 KOG0989|consensus 99.9 1.9E-22 4.1E-27 204.6 16.0 204 30-265 22-236 (346)
45 KOG0733|consensus 99.9 2.5E-22 5.5E-27 219.1 16.1 181 62-267 542-733 (802)
46 KOG0734|consensus 99.9 3.9E-22 8.4E-27 214.2 16.3 205 40-272 300-526 (752)
47 KOG0745|consensus 99.9 2E-21 4.4E-26 204.4 18.3 219 471-707 227-513 (564)
48 KOG0736|consensus 99.9 2.4E-21 5.2E-26 216.9 18.4 202 40-268 668-896 (953)
49 PRK14956 DNA polymerase III su 99.9 4.3E-21 9.2E-26 213.6 19.8 204 32-266 6-229 (484)
50 KOG2028|consensus 99.9 3.8E-21 8.3E-26 197.6 16.9 207 32-271 126-348 (554)
51 COG3829 RocR Transcriptional r 99.9 3.9E-21 8.5E-26 210.7 16.1 244 439-718 244-491 (560)
52 COG2204 AtoC Response regulato 99.9 5.9E-21 1.3E-25 210.9 17.6 265 399-699 103-371 (464)
53 CHL00195 ycf46 Ycf46; Provisio 99.9 2.1E-20 4.6E-25 212.4 21.6 204 40-269 224-446 (489)
54 PRK07003 DNA polymerase III su 99.9 1.3E-20 2.8E-25 216.2 18.9 204 33-267 5-228 (830)
55 CHL00195 ycf46 Ycf46; Provisio 99.9 8.2E-19 1.8E-23 199.5 33.2 160 472-691 261-436 (489)
56 COG3604 FhlA Transcriptional r 99.8 7.4E-21 1.6E-25 205.3 14.3 227 440-699 223-453 (550)
57 PRK12323 DNA polymerase III su 99.8 2.1E-20 4.5E-25 212.2 17.6 204 32-266 4-232 (700)
58 KOG0739|consensus 99.8 2.1E-20 4.6E-25 187.4 14.7 183 42-247 131-335 (439)
59 CHL00181 cbbX CbbX; Provisiona 99.8 4.8E-20 1E-24 197.5 18.1 218 430-699 13-251 (287)
60 PRK14960 DNA polymerase III su 99.8 3.5E-19 7.5E-24 202.9 25.3 204 32-266 3-226 (702)
61 PF05496 RuvB_N: Holliday junc 99.8 5.6E-20 1.2E-24 182.4 16.5 181 439-678 23-211 (233)
62 PRK13342 recombination factor 99.8 5.8E-20 1.2E-24 209.1 19.0 196 33-266 1-203 (413)
63 TIGR02881 spore_V_K stage V sp 99.8 1.7E-19 3.8E-24 192.6 21.0 215 42-269 4-240 (261)
64 PRK03992 proteasome-activating 99.8 2E-19 4.3E-24 202.2 21.9 202 40-269 127-354 (389)
65 PLN03025 replication factor C 99.8 6.4E-20 1.4E-24 201.9 17.5 196 32-263 1-204 (319)
66 KOG0737|consensus 99.8 3.6E-20 7.8E-25 193.5 14.3 196 42-266 90-310 (386)
67 COG1222 RPT1 ATP-dependent 26S 99.8 6.6E-20 1.4E-24 190.1 15.9 164 440-652 151-337 (406)
68 PTZ00454 26S protease regulato 99.8 2.8E-19 6E-24 199.3 22.0 203 39-269 140-368 (398)
69 COG1220 HslU ATP-dependent pro 99.8 8.9E-20 1.9E-24 186.4 15.7 247 433-707 8-412 (444)
70 PRK14949 DNA polymerase III su 99.8 1.5E-19 3.2E-24 211.8 19.3 203 32-265 4-226 (944)
71 COG2256 MGS1 ATPase related to 99.8 6.3E-20 1.4E-24 193.5 14.1 188 440-700 24-218 (436)
72 PRK14964 DNA polymerase III su 99.8 2.6E-19 5.6E-24 202.2 19.7 204 33-267 2-225 (491)
73 TIGR02880 cbbX_cfxQ probable R 99.8 3E-19 6.4E-24 191.8 19.3 215 429-699 11-250 (284)
74 PRK14962 DNA polymerase III su 99.8 2.7E-19 5.7E-24 203.6 19.7 203 33-266 3-225 (472)
75 KOG0735|consensus 99.8 2.1E-19 4.6E-24 199.4 17.9 196 42-265 665-883 (952)
76 KOG0991|consensus 99.8 4.8E-20 1E-24 178.8 11.0 208 28-267 11-222 (333)
77 PLN00020 ribulose bisphosphate 99.8 2.1E-19 4.6E-24 189.8 16.7 157 62-242 145-327 (413)
78 TIGR01241 FtsH_fam ATP-depende 99.8 3.3E-19 7.1E-24 207.8 20.0 201 39-267 50-275 (495)
79 PRK07994 DNA polymerase III su 99.8 2.9E-19 6.3E-24 207.4 19.1 204 32-266 4-227 (647)
80 TIGR02974 phageshock_pspF psp 99.8 2.8E-19 6E-24 195.8 17.2 224 442-699 1-230 (329)
81 PRK14958 DNA polymerase III su 99.8 3E-19 6.5E-24 205.4 18.0 203 33-266 5-227 (509)
82 cd07425 MPP_Shelphs Shewanella 99.8 5E-20 1.1E-24 188.3 10.4 123 683-805 1-142 (208)
83 PRK13341 recombination factor 99.8 3.2E-19 6.8E-24 211.8 18.6 198 32-265 16-223 (725)
84 COG2255 RuvB Holliday junction 99.8 3.8E-19 8.2E-24 178.8 16.1 194 34-271 16-235 (332)
85 PTZ00361 26 proteosome regulat 99.8 3.1E-19 6.6E-24 199.8 17.2 206 35-268 174-405 (438)
86 KOG0740|consensus 99.8 5.5E-19 1.2E-23 192.2 18.2 200 38-265 147-369 (428)
87 CHL00181 cbbX CbbX; Provisiona 99.8 2E-18 4.3E-23 185.1 22.2 213 45-270 24-257 (287)
88 KOG0731|consensus 99.8 5.6E-19 1.2E-23 203.2 18.3 204 39-269 306-535 (774)
89 TIGR01243 CDC48 AAA family ATP 99.8 8.9E-19 1.9E-23 213.6 20.7 201 40-268 449-673 (733)
90 COG0464 SpoVK ATPases of the A 99.8 1.4E-18 2.9E-23 203.6 21.5 207 39-271 237-466 (494)
91 PRK14957 DNA polymerase III su 99.8 1.4E-18 2.9E-23 199.3 20.4 205 32-267 4-228 (546)
92 TIGR03689 pup_AAA proteasome A 99.8 1E-18 2.3E-23 197.9 19.2 181 35-222 173-380 (512)
93 COG1223 Predicted ATPase (AAA+ 99.8 2.3E-19 5E-24 176.9 11.9 168 438-653 119-300 (368)
94 PRK14961 DNA polymerase III su 99.8 1.6E-18 3.5E-23 193.6 19.7 204 32-266 4-227 (363)
95 PRK14952 DNA polymerase III su 99.8 2.2E-18 4.8E-23 199.4 21.2 204 33-267 2-227 (584)
96 KOG0728|consensus 99.8 1E-18 2.2E-23 171.1 15.2 179 35-231 138-342 (404)
97 PRK06645 DNA polymerase III su 99.8 1.7E-18 3.6E-23 197.5 19.6 205 32-267 9-237 (507)
98 CHL00176 ftsH cell division pr 99.8 3.4E-18 7.4E-23 200.6 21.5 200 41-268 180-404 (638)
99 PRK14951 DNA polymerase III su 99.8 1.8E-18 3.9E-23 200.7 18.9 203 33-266 5-232 (618)
100 PRK07764 DNA polymerase III su 99.8 5.4E-18 1.2E-22 203.6 23.6 204 32-266 3-228 (824)
101 PRK14959 DNA polymerase III su 99.8 2.4E-18 5.2E-23 197.8 18.7 205 32-264 4-225 (624)
102 PRK08451 DNA polymerase III su 99.8 6E-18 1.3E-22 192.8 21.5 205 32-267 2-226 (535)
103 KOG0727|consensus 99.8 9E-19 1.9E-23 171.7 12.6 178 62-267 186-376 (408)
104 PRK08691 DNA polymerase III su 99.8 2.2E-18 4.7E-23 198.6 17.1 204 32-266 4-227 (709)
105 TIGR01817 nifA Nif-specific re 99.8 2E-18 4.4E-23 203.5 17.2 226 440-699 196-425 (534)
106 TIGR02880 cbbX_cfxQ probable R 99.8 1.5E-17 3.2E-22 178.7 21.4 213 45-270 23-256 (284)
107 PRK11608 pspF phage shock prot 99.8 5E-18 1.1E-22 186.3 18.1 228 440-699 6-237 (326)
108 PRK05896 DNA polymerase III su 99.8 5.9E-18 1.3E-22 193.5 18.6 205 32-267 4-228 (605)
109 KOG0652|consensus 99.8 5.3E-18 1.2E-22 167.0 15.3 198 39-264 165-389 (424)
110 PRK14969 DNA polymerase III su 99.8 2.2E-17 4.8E-22 191.5 23.0 203 33-266 5-227 (527)
111 PHA02544 44 clamp loader, smal 99.8 8.8E-18 1.9E-22 185.8 18.6 200 31-263 8-213 (316)
112 PRK15424 propionate catabolism 99.8 6.3E-18 1.4E-22 194.2 17.8 225 440-699 219-462 (538)
113 TIGR02329 propionate_PrpR prop 99.8 6.9E-18 1.5E-22 194.3 18.1 225 440-699 212-447 (526)
114 KOG0729|consensus 99.8 4.4E-18 9.5E-23 168.1 13.5 198 42-267 175-398 (435)
115 COG1221 PspF Transcriptional r 99.8 5.9E-18 1.3E-22 184.0 15.9 230 436-702 74-309 (403)
116 PRK09111 DNA polymerase III su 99.8 1.4E-17 3.1E-22 194.0 20.0 204 32-266 12-240 (598)
117 PRK04195 replication factor C 99.8 5.5E-18 1.2E-22 196.7 16.5 194 32-262 2-205 (482)
118 TIGR01242 26Sp45 26S proteasom 99.8 1.7E-17 3.7E-22 186.1 19.8 202 39-268 117-344 (364)
119 PRK05022 anaerobic nitric oxid 99.8 1E-17 2.2E-22 195.6 18.6 227 440-699 187-417 (509)
120 PRK14963 DNA polymerase III su 99.8 1.7E-17 3.6E-22 190.5 19.9 203 33-266 3-224 (504)
121 PRK00080 ruvB Holliday junctio 99.8 1.4E-17 2.9E-22 184.3 18.4 190 34-267 15-230 (328)
122 PRK05563 DNA polymerase III su 99.8 2.1E-17 4.6E-22 192.9 20.8 203 33-266 5-227 (559)
123 TIGR02881 spore_V_K stage V sp 99.8 3.1E-17 6.8E-22 175.3 20.3 184 441-677 7-209 (261)
124 PF00158 Sigma54_activat: Sigm 99.8 6.3E-18 1.4E-22 166.1 13.6 163 442-630 1-164 (168)
125 PRK07133 DNA polymerase III su 99.8 2E-17 4.3E-22 192.9 20.1 204 32-266 6-226 (725)
126 PRK10820 DNA-binding transcrip 99.8 1.2E-17 2.6E-22 194.7 17.7 229 439-700 203-435 (520)
127 COG0465 HflB ATP-dependent Zn 99.8 8.3E-18 1.8E-22 190.7 15.3 201 41-269 147-372 (596)
128 KOG0726|consensus 99.8 1.7E-18 3.7E-23 173.2 8.5 177 35-229 176-378 (440)
129 PRK14965 DNA polymerase III su 99.7 1.8E-17 3.8E-22 194.6 17.9 205 33-268 5-229 (576)
130 KOG0732|consensus 99.7 1.3E-17 2.7E-22 196.9 16.5 204 40-265 261-487 (1080)
131 CHL00206 ycf2 Ycf2; Provisiona 99.7 2.6E-17 5.7E-22 201.9 19.7 183 62-272 1627-1862(2281)
132 COG2812 DnaX DNA polymerase II 99.7 9.1E-18 2E-22 188.5 13.8 205 33-268 5-229 (515)
133 COG3283 TyrR Transcriptional r 99.7 3.4E-17 7.3E-22 168.6 15.8 226 440-702 204-432 (511)
134 TIGR02902 spore_lonB ATP-depen 99.7 3.8E-17 8.3E-22 190.2 18.1 211 30-267 51-312 (531)
135 KOG0989|consensus 99.7 3.9E-17 8.4E-22 166.3 15.6 189 440-699 36-235 (346)
136 PRK06647 DNA polymerase III su 99.7 8.2E-17 1.8E-21 187.0 20.6 203 33-266 5-227 (563)
137 PRK14955 DNA polymerase III su 99.7 4.4E-17 9.5E-22 184.1 17.4 204 33-267 5-236 (397)
138 PRK14953 DNA polymerase III su 99.7 1E-16 2.2E-21 183.6 20.4 204 32-266 4-227 (486)
139 PRK06305 DNA polymerase III su 99.7 1E-16 2.2E-21 182.6 20.3 204 32-266 5-229 (451)
140 PRK14954 DNA polymerase III su 99.7 1E-16 2.3E-21 186.9 20.0 204 33-267 5-236 (620)
141 COG2255 RuvB Holliday junction 99.7 7.8E-17 1.7E-21 162.3 15.9 181 439-678 25-213 (332)
142 TIGR00635 ruvB Holliday juncti 99.7 1.4E-16 3E-21 175.3 19.7 183 41-267 1-209 (305)
143 PRK12402 replication factor C 99.7 1.2E-16 2.6E-21 178.8 19.1 205 32-264 3-231 (337)
144 PRK11388 DNA-binding transcrip 99.7 6.8E-17 1.5E-21 194.9 17.6 225 439-699 324-551 (638)
145 PRK14956 DNA polymerase III su 99.7 7.9E-17 1.7E-21 179.7 15.9 200 440-699 18-227 (484)
146 PRK15429 formate hydrogenlyase 99.7 1.4E-16 3E-21 193.2 19.4 225 441-699 377-606 (686)
147 PRK14970 DNA polymerase III su 99.7 3.4E-16 7.3E-21 176.5 21.2 205 32-267 5-217 (367)
148 PRK00440 rfc replication facto 99.7 2E-16 4.3E-21 175.6 18.6 204 31-266 4-210 (319)
149 TIGR02397 dnaX_nterm DNA polym 99.7 3.5E-16 7.5E-21 176.3 20.7 204 32-266 2-225 (355)
150 PRK14948 DNA polymerase III su 99.7 3.5E-16 7.5E-21 183.9 21.4 202 32-264 4-227 (620)
151 PRK10733 hflB ATP-dependent me 99.7 2.7E-16 5.9E-21 187.3 20.6 203 39-269 147-374 (644)
152 KOG0734|consensus 99.7 7.7E-17 1.7E-21 173.8 13.7 164 439-652 303-486 (752)
153 PRK14971 DNA polymerase III su 99.7 3.6E-16 7.8E-21 183.8 19.9 204 33-267 6-230 (614)
154 PRK10923 glnG nitrogen regulat 99.7 2.3E-16 4.9E-21 184.5 17.2 225 441-699 139-368 (469)
155 KOG2035|consensus 99.7 2.4E-15 5.2E-20 150.4 20.4 253 34-315 3-279 (351)
156 PRK04132 replication factor C 99.7 2.8E-14 6.1E-19 170.1 33.1 162 472-699 566-736 (846)
157 PRK14949 DNA polymerase III su 99.7 1.8E-16 3.9E-21 186.1 14.3 185 440-677 16-209 (944)
158 COG5271 MDN1 AAA ATPase contai 99.7 5.5E-15 1.2E-19 174.1 25.7 154 472-652 1545-1705(4600)
159 PRK07003 DNA polymerase III su 99.7 5.4E-16 1.2E-20 178.6 16.2 201 439-699 15-225 (830)
160 PRK12323 DNA polymerase III su 99.7 4.2E-16 9.2E-21 177.4 14.7 185 439-677 15-214 (700)
161 KOG0727|consensus 99.7 3.4E-16 7.4E-21 153.7 12.0 157 441-646 156-335 (408)
162 TIGR02915 PEP_resp_reg putativ 99.7 1.7E-15 3.6E-20 176.0 19.7 226 441-699 140-369 (445)
163 KOG0651|consensus 99.7 4.3E-16 9.2E-21 158.2 11.1 184 41-247 129-338 (388)
164 PRK14950 DNA polymerase III su 99.7 1.8E-15 3.9E-20 178.8 18.3 203 32-265 4-227 (585)
165 KOG0738|consensus 99.6 1E-15 2.3E-20 159.8 12.7 167 440-651 212-396 (491)
166 PRK11361 acetoacetate metaboli 99.6 2.8E-15 6E-20 175.0 17.7 224 442-699 145-373 (457)
167 PF00004 AAA: ATPase family as 99.6 2.1E-15 4.6E-20 143.8 13.5 121 68-205 1-131 (132)
168 PRK14960 DNA polymerase III su 99.6 2.5E-15 5.5E-20 171.6 15.8 186 439-678 14-209 (702)
169 PLN03025 replication factor C 99.6 4.1E-15 9E-20 163.7 17.1 182 440-696 13-202 (319)
170 TIGR02902 spore_lonB ATP-depen 99.6 5.9E-15 1.3E-19 171.9 19.0 206 440-691 65-304 (531)
171 PRK14964 DNA polymerase III su 99.6 2.9E-15 6.3E-20 169.5 15.8 187 439-678 12-207 (491)
172 KOG0742|consensus 99.6 6.9E-15 1.5E-19 154.0 17.0 182 25-224 331-532 (630)
173 PRK14958 DNA polymerase III su 99.6 4.8E-15 1E-19 170.8 17.4 185 439-678 15-210 (509)
174 TIGR01818 ntrC nitrogen regula 99.6 4.7E-15 1E-19 173.3 17.3 225 442-699 136-364 (463)
175 KOG2170|consensus 99.6 4.9E-15 1.1E-19 150.5 15.0 239 431-691 73-334 (344)
176 KOG0728|consensus 99.6 2.8E-15 6E-20 147.2 12.6 163 440-651 147-332 (404)
177 KOG0990|consensus 99.6 6.5E-15 1.4E-19 151.0 15.7 211 25-267 22-240 (360)
178 PRK14962 DNA polymerase III su 99.6 7.2E-15 1.6E-19 167.5 17.6 199 440-699 14-223 (472)
179 PRK07994 DNA polymerase III su 99.6 8E-15 1.7E-19 170.7 18.0 185 439-677 15-209 (647)
180 KOG2028|consensus 99.6 2.9E-15 6.3E-20 154.7 12.5 192 441-700 139-342 (554)
181 PRK15115 response regulator Gl 99.6 6.2E-15 1.3E-19 171.2 17.0 226 441-699 135-364 (444)
182 cd07420 MPP_RdgC Drosophila me 99.6 3.1E-15 6.6E-20 160.4 13.2 129 680-812 51-186 (321)
183 PRK14952 DNA polymerase III su 99.6 1E-14 2.2E-19 169.1 18.6 187 439-678 12-209 (584)
184 TIGR00763 lon ATP-dependent pr 99.6 5.8E-15 1.2E-19 180.5 17.3 180 42-242 317-533 (775)
185 PRK14957 DNA polymerase III su 99.6 6.1E-15 1.3E-19 169.3 16.3 201 439-699 15-225 (546)
186 TIGR02903 spore_lon_C ATP-depe 99.6 2E-14 4.3E-19 170.1 21.1 214 30-266 140-401 (615)
187 PRK07764 DNA polymerase III su 99.6 8.3E-15 1.8E-19 176.3 18.1 200 439-699 14-226 (824)
188 PRK14951 DNA polymerase III su 99.6 7.5E-15 1.6E-19 170.7 16.4 186 439-677 15-214 (618)
189 PRK00080 ruvB Holliday junctio 99.6 8.2E-14 1.8E-18 154.2 24.0 180 440-678 25-212 (328)
190 PRK14961 DNA polymerase III su 99.6 1E-14 2.3E-19 163.0 16.7 186 439-677 15-209 (363)
191 PLN00020 ribulose bisphosphate 99.6 1.6E-14 3.6E-19 153.1 16.1 141 471-652 149-313 (413)
192 KOG0739|consensus 99.6 8.8E-15 1.9E-19 147.4 13.2 194 440-691 133-342 (439)
193 PRK06645 DNA polymerase III su 99.6 1.7E-14 3.7E-19 164.8 16.6 183 440-677 21-218 (507)
194 PRK08084 DNA replication initi 99.6 3.7E-14 7.9E-19 148.7 17.8 189 42-263 20-213 (235)
195 PRK14959 DNA polymerase III su 99.6 1.1E-14 2.5E-19 167.7 15.2 199 440-699 16-225 (624)
196 PRK08691 DNA polymerase III su 99.6 8.6E-15 1.9E-19 169.1 14.2 200 440-699 16-225 (709)
197 PRK07133 DNA polymerase III su 99.6 1.7E-14 3.6E-19 168.6 16.7 186 439-678 17-209 (725)
198 COG2812 DnaX DNA polymerase II 99.6 5.1E-15 1.1E-19 166.5 11.9 201 439-699 15-225 (515)
199 PRK07940 DNA polymerase III su 99.6 2.4E-14 5.2E-19 159.4 16.9 184 42-260 3-214 (394)
200 TIGR03689 pup_AAA proteasome A 99.6 7.1E-15 1.5E-19 166.9 12.7 162 441-651 183-379 (512)
201 PRK14965 DNA polymerase III su 99.6 1.4E-14 3.1E-19 170.2 15.6 203 439-700 15-226 (576)
202 PRK05563 DNA polymerase III su 99.6 3.5E-14 7.6E-19 166.1 18.7 185 439-677 15-209 (559)
203 TIGR00635 ruvB Holliday juncti 99.6 5.1E-14 1.1E-18 154.9 18.8 179 440-677 4-190 (305)
204 TIGR00602 rad24 checkpoint pro 99.6 2.9E-14 6.4E-19 166.1 17.5 225 31-265 71-329 (637)
205 PRK14963 DNA polymerase III su 99.6 2.9E-14 6.4E-19 163.9 17.1 200 440-699 14-222 (504)
206 PRK08451 DNA polymerase III su 99.6 3.2E-14 6.9E-19 162.5 17.1 201 440-699 14-223 (535)
207 KOG0731|consensus 99.6 1.3E-14 2.8E-19 167.5 13.6 164 439-652 310-497 (774)
208 PRK13531 regulatory ATPase Rav 99.6 5.5E-14 1.2E-18 156.3 17.9 179 429-648 9-192 (498)
209 PRK03992 proteasome-activating 99.6 4.4E-14 9.4E-19 159.0 16.9 163 439-650 130-315 (389)
210 PRK05896 DNA polymerase III su 99.6 3.4E-14 7.4E-19 162.9 15.6 184 440-678 16-210 (605)
211 PRK14969 DNA polymerase III su 99.6 2.9E-14 6.2E-19 165.6 15.0 184 440-678 16-210 (527)
212 KOG0726|consensus 99.6 9.1E-15 2E-19 146.8 9.2 159 440-647 185-366 (440)
213 PRK09111 DNA polymerase III su 99.6 4E-14 8.7E-19 165.3 16.1 187 439-678 23-223 (598)
214 PTZ00454 26S protease regulato 99.6 6.2E-14 1.3E-18 156.6 16.9 164 439-651 144-330 (398)
215 COG0466 Lon ATP-dependent Lon 99.6 6.2E-14 1.3E-18 158.3 16.6 199 45-264 324-558 (782)
216 COG3284 AcoR Transcriptional a 99.6 1.8E-14 3.8E-19 161.9 12.1 218 444-699 317-537 (606)
217 PRK13342 recombination factor 99.5 9.6E-14 2.1E-18 158.2 17.8 167 440-677 12-185 (413)
218 PRK06305 DNA polymerase III su 99.5 6.8E-14 1.5E-18 159.6 16.3 183 440-677 17-211 (451)
219 PRK13341 recombination factor 99.5 7E-14 1.5E-18 166.5 17.0 191 440-699 28-222 (725)
220 PRK14953 DNA polymerase III su 99.5 7.4E-14 1.6E-18 160.1 16.1 186 439-677 15-209 (486)
221 PRK06893 DNA replication initi 99.5 1.7E-13 3.7E-18 143.1 17.4 191 39-263 11-207 (229)
222 PRK07940 DNA polymerase III su 99.5 8E-14 1.7E-18 155.3 15.6 173 439-647 4-186 (394)
223 KOG0729|consensus 99.5 2E-14 4.4E-19 142.4 9.6 159 440-647 177-358 (435)
224 KOG0652|consensus 99.5 5.2E-14 1.1E-18 139.1 12.4 160 440-648 171-353 (424)
225 CHL00176 ftsH cell division pr 99.5 9.9E-14 2.1E-18 163.2 16.7 191 440-691 183-395 (638)
226 smart00156 PP2Ac Protein phosp 99.5 1.6E-13 3.5E-18 145.7 16.7 119 680-804 28-151 (271)
227 PRK14954 DNA polymerase III su 99.5 1.3E-13 2.8E-18 161.1 16.5 185 439-678 15-218 (620)
228 PRK10365 transcriptional regul 99.5 1.4E-13 3.1E-18 159.9 16.9 202 472-699 164-369 (441)
229 KOG2004|consensus 99.5 1.5E-13 3.2E-18 153.9 16.1 178 45-243 412-625 (906)
230 PRK06647 DNA polymerase III su 99.5 1.5E-13 3.3E-18 159.9 16.5 184 439-677 15-209 (563)
231 PRK14955 DNA polymerase III su 99.5 1E-13 2.2E-18 156.9 14.6 185 439-678 15-218 (397)
232 cd07418 MPP_PP7 PP7, metalloph 99.5 4E-14 8.8E-19 153.8 10.8 123 680-806 66-195 (377)
233 TIGR01241 FtsH_fam ATP-depende 99.5 8.9E-14 1.9E-18 162.3 14.5 164 440-651 55-239 (495)
234 PHA02544 44 clamp loader, smal 99.5 5E-13 1.1E-17 147.8 19.6 174 440-678 21-199 (316)
235 COG1224 TIP49 DNA helicase TIP 99.5 2.4E-13 5.3E-18 140.9 15.5 102 543-678 292-393 (450)
236 COG5271 MDN1 AAA ATPase contai 99.5 3.3E-11 7.1E-16 143.2 34.8 147 472-647 890-1044(4600)
237 TIGR02640 gas_vesic_GvpN gas v 99.5 6.1E-13 1.3E-17 141.9 19.3 150 472-649 23-197 (262)
238 PTZ00244 serine/threonine-prot 99.5 4.7E-14 1E-18 150.3 10.6 148 636-805 24-176 (294)
239 PRK09112 DNA polymerase III su 99.5 5.3E-13 1.1E-17 146.9 19.1 201 38-263 17-244 (351)
240 PRK07471 DNA polymerase III su 99.5 4.4E-13 9.5E-18 148.3 18.4 197 38-261 13-240 (365)
241 PF01078 Mg_chelatase: Magnesi 99.5 3.4E-14 7.4E-19 140.9 8.6 181 440-641 3-206 (206)
242 PRK14948 DNA polymerase III su 99.5 1.4E-13 3E-18 162.0 15.0 185 439-677 15-211 (620)
243 TIGR02928 orc1/cdc6 family rep 99.5 4.6E-13 1E-17 151.4 18.8 219 34-268 8-255 (365)
244 PTZ00112 origin recognition co 99.5 3.9E-13 8.5E-18 155.2 18.0 205 44-265 755-987 (1164)
245 cd07414 MPP_PP1_PPKL PP1, PPKL 99.5 2.5E-13 5.5E-18 145.1 15.5 148 636-805 22-174 (293)
246 cd07419 MPP_Bsu1_C Arabidopsis 99.5 1.1E-13 2.4E-18 149.8 12.5 152 637-805 21-186 (311)
247 cd07417 MPP_PP5_C PP5, C-termi 99.5 4E-14 8.7E-19 152.4 8.5 118 680-802 60-182 (316)
248 PRK12402 replication factor C 99.5 5.3E-13 1.1E-17 149.4 17.9 184 440-678 15-216 (337)
249 PF05673 DUF815: Protein of un 99.5 1.9E-12 4.2E-17 130.9 20.0 193 39-262 22-244 (249)
250 KOG0744|consensus 99.5 8.2E-14 1.8E-18 142.4 10.1 148 68-223 180-343 (423)
251 PTZ00361 26 proteosome regulat 99.5 1.6E-13 3.4E-18 154.1 13.1 163 440-651 183-368 (438)
252 cd07416 MPP_PP2B PP2B, metallo 99.5 1.4E-13 3.1E-18 148.1 12.2 120 680-805 43-167 (305)
253 TIGR02640 gas_vesic_GvpN gas v 99.5 8E-13 1.7E-17 141.0 17.4 165 51-247 9-216 (262)
254 PRK04195 replication factor C 99.5 4.8E-13 1E-17 155.5 16.9 187 440-697 14-205 (482)
255 PRK05201 hslU ATP-dependent pr 99.5 1E-12 2.2E-17 143.3 17.8 107 138-245 250-382 (443)
256 PF06068 TIP49: TIP49 C-termin 99.5 3.5E-13 7.6E-18 142.8 13.4 102 543-678 279-380 (398)
257 TIGR03420 DnaA_homol_Hda DnaA 99.5 2.7E-12 5.8E-17 134.8 20.3 193 40-267 11-209 (226)
258 TIGR02903 spore_lon_C ATP-depe 99.5 5.9E-12 1.3E-16 149.2 25.3 197 440-678 154-385 (615)
259 KOG1969|consensus 99.5 5.3E-13 1.1E-17 150.1 15.3 201 30-269 257-520 (877)
260 CHL00206 ycf2 Ycf2; Provisiona 99.5 2.9E-13 6.3E-18 167.1 14.1 145 470-647 1630-1814(2281)
261 PRK08727 hypothetical protein; 99.5 3.7E-12 8E-17 133.3 20.6 189 42-264 17-209 (233)
262 PRK10787 DNA-binding ATP-depen 99.5 7.3E-13 1.6E-17 160.1 17.4 178 42-241 319-533 (784)
263 PRK05642 DNA replication initi 99.5 2.4E-12 5.3E-17 134.7 18.7 188 42-263 17-212 (234)
264 PRK14971 DNA polymerase III su 99.5 8.1E-13 1.8E-17 155.7 16.8 185 439-678 16-212 (614)
265 TIGR00390 hslU ATP-dependent p 99.5 1.7E-12 3.7E-17 141.4 17.8 131 137-268 247-405 (441)
266 PHA02244 ATPase-like protein 99.5 4.4E-12 9.5E-17 136.4 20.3 171 439-641 95-265 (383)
267 PTZ00239 serine/threonine prot 99.5 3.1E-13 6.7E-18 144.5 11.5 148 636-804 15-167 (303)
268 TIGR02397 dnaX_nterm DNA polym 99.4 2E-12 4.3E-17 145.8 18.5 183 439-677 13-207 (355)
269 TIGR01242 26Sp45 26S proteasom 99.4 7.4E-13 1.6E-17 148.7 14.8 168 438-650 120-306 (364)
270 PRK14950 DNA polymerase III su 99.4 8.9E-13 1.9E-17 156.1 15.9 186 439-677 15-210 (585)
271 PRK14970 DNA polymerase III su 99.4 2E-12 4.4E-17 145.8 18.2 187 440-699 17-214 (367)
272 PF00004 AAA: ATPase family as 99.4 4.5E-13 9.8E-18 127.7 10.7 116 473-635 1-131 (132)
273 PRK12422 chromosomal replicati 99.4 6.3E-12 1.4E-16 142.9 21.5 199 41-264 108-318 (445)
274 PRK00149 dnaA chromosomal repl 99.4 5.4E-12 1.2E-16 145.7 21.3 201 42-266 120-329 (450)
275 PRK05342 clpX ATP-dependent pr 99.4 2.4E-12 5.3E-17 144.1 17.7 191 42-243 68-357 (412)
276 PRK06620 hypothetical protein; 99.4 1.8E-12 4E-17 133.1 15.1 171 42-264 14-194 (214)
277 CHL00081 chlI Mg-protoporyphyr 99.4 3.8E-12 8.2E-17 138.4 18.2 234 30-281 2-318 (350)
278 cd07415 MPP_PP2A_PP4_PP6 PP2A, 99.4 4.1E-13 8.9E-18 142.9 10.3 149 636-805 14-167 (285)
279 PRK08727 hypothetical protein; 99.4 3.2E-12 6.9E-17 133.8 16.9 163 472-699 43-209 (233)
280 PRK08903 DnaA regulatory inact 99.4 8.1E-12 1.7E-16 131.0 20.0 182 39-264 13-204 (227)
281 PRK00411 cdc6 cell division co 99.4 9.2E-12 2E-16 142.3 22.2 209 44-268 30-263 (394)
282 TIGR03420 DnaA_homol_Hda DnaA 99.4 2.2E-12 4.7E-17 135.5 15.0 184 444-698 21-208 (226)
283 PRK14088 dnaA chromosomal repl 99.4 6.3E-12 1.4E-16 143.5 19.5 201 42-265 103-311 (440)
284 COG0465 HflB ATP-dependent Zn 99.4 1.1E-12 2.4E-17 149.4 13.0 164 440-650 150-333 (596)
285 KOG0743|consensus 99.4 1.5E-12 3.2E-17 140.8 13.0 157 39-221 196-384 (457)
286 TIGR00362 DnaA chromosomal rep 99.4 1.4E-11 3E-16 140.7 21.5 201 42-266 108-317 (405)
287 PRK00440 rfc replication facto 99.4 6.6E-12 1.4E-16 139.4 18.5 183 440-697 17-206 (319)
288 KOG0737|consensus 99.4 7.5E-13 1.6E-17 139.1 10.1 138 469-652 126-276 (386)
289 PTZ00480 serine/threonine-prot 99.4 1E-12 2.3E-17 140.7 11.3 148 636-805 31-183 (320)
290 CHL00081 chlI Mg-protoporyphyr 99.4 3.1E-12 6.7E-17 139.1 14.9 176 440-649 17-231 (350)
291 PRK13407 bchI magnesium chelat 99.4 6.7E-12 1.4E-16 136.4 17.4 176 440-649 8-215 (334)
292 PRK14086 dnaA chromosomal repl 99.4 1.2E-11 2.5E-16 142.3 20.3 199 42-264 286-493 (617)
293 PRK07399 DNA polymerase III su 99.4 2.6E-12 5.7E-17 139.5 14.2 166 439-649 3-194 (314)
294 PRK08084 DNA replication initi 99.4 5.9E-12 1.3E-16 132.0 16.1 149 472-678 47-199 (235)
295 PRK13407 bchI magnesium chelat 99.4 6E-12 1.3E-16 136.8 16.3 215 40-270 4-289 (334)
296 TIGR02639 ClpA ATP-dependent C 99.4 4.4E-12 9.5E-17 154.5 16.6 181 440-677 182-380 (731)
297 KOG0742|consensus 99.4 2.2E-12 4.8E-17 135.4 11.9 165 442-654 357-532 (630)
298 PRK06893 DNA replication initi 99.4 7.4E-12 1.6E-16 130.8 15.9 148 472-677 41-192 (229)
299 PF00308 Bac_DnaA: Bacterial d 99.4 1.1E-11 2.3E-16 128.3 16.7 202 42-267 6-216 (219)
300 PF07728 AAA_5: AAA domain (dy 99.4 1.7E-12 3.7E-17 124.9 10.1 128 472-628 1-139 (139)
301 COG0714 MoxR-like ATPases [Gen 99.4 3.7E-12 7.9E-17 141.1 14.1 175 431-645 15-197 (329)
302 PRK09087 hypothetical protein; 99.4 2E-11 4.3E-16 126.7 18.4 175 42-264 19-200 (226)
303 PRK08903 DnaA regulatory inact 99.4 9.1E-12 2E-16 130.7 16.0 155 472-692 44-200 (227)
304 KOG0991|consensus 99.4 2.3E-12 4.9E-17 125.9 10.4 188 440-703 27-223 (333)
305 PRK05564 DNA polymerase III su 99.4 1.6E-11 3.4E-16 135.1 18.3 175 42-245 2-182 (313)
306 PRK11034 clpA ATP-dependent Cl 99.4 1.1E-11 2.3E-16 148.7 18.2 178 45-243 459-694 (758)
307 PF13177 DNA_pol3_delta2: DNA 99.4 1.8E-12 3.9E-17 127.4 9.4 151 444-638 1-162 (162)
308 PRK09112 DNA polymerase III su 99.4 1.1E-11 2.3E-16 136.6 16.5 183 440-677 23-229 (351)
309 PRK07399 DNA polymerase III su 99.4 1.6E-11 3.4E-16 133.5 17.3 195 42-262 2-224 (314)
310 TIGR00678 holB DNA polymerase 99.4 1.5E-11 3.3E-16 124.8 16.1 162 55-247 3-185 (188)
311 TIGR02030 BchI-ChlI magnesium 99.4 9.8E-12 2.1E-16 135.5 15.6 206 440-678 4-267 (337)
312 COG0606 Predicted ATPase with 99.3 4.2E-12 9.1E-17 138.5 11.7 178 440-641 179-383 (490)
313 TIGR02442 Cob-chelat-sub cobal 99.3 1.9E-11 4.1E-16 146.0 18.4 200 440-678 4-262 (633)
314 TIGR01650 PD_CobS cobaltochela 99.3 7.2E-12 1.6E-16 133.7 12.9 154 45-220 46-233 (327)
315 KOG0371|consensus 99.3 1.3E-12 2.7E-17 128.7 6.2 232 680-930 60-299 (319)
316 COG2607 Predicted ATPase (AAA+ 99.3 9.5E-11 2.1E-15 115.8 19.2 194 40-264 56-278 (287)
317 TIGR00368 Mg chelatase-related 99.3 1.9E-11 4.2E-16 140.1 16.9 185 440-642 192-396 (499)
318 TIGR00382 clpX endopeptidase C 99.3 2.7E-11 5.8E-16 134.8 17.4 191 42-243 74-363 (413)
319 KOG0651|consensus 99.3 3.3E-12 7.2E-17 130.2 9.2 160 440-644 132-310 (388)
320 PRK07471 DNA polymerase III su 99.3 8.7E-12 1.9E-16 138.0 13.0 165 440-648 19-211 (365)
321 COG0470 HolB ATPase involved i 99.3 2.2E-11 4.7E-16 135.6 16.4 172 44-247 1-193 (325)
322 PRK14087 dnaA chromosomal repl 99.3 5.6E-11 1.2E-15 135.8 19.8 203 40-264 111-324 (450)
323 PTZ00112 origin recognition co 99.3 3.8E-11 8.3E-16 139.1 18.2 217 438-700 753-987 (1164)
324 PRK05564 DNA polymerase III su 99.3 2.2E-11 4.8E-16 133.9 15.7 156 440-648 4-163 (313)
325 TIGR02030 BchI-ChlI magnesium 99.3 5.1E-11 1.1E-15 129.9 18.2 220 43-280 3-304 (337)
326 TIGR01650 PD_CobS cobaltochela 99.3 2.1E-11 4.5E-16 130.3 14.8 157 472-649 66-232 (327)
327 PF14532 Sigma54_activ_2: Sigm 99.3 4.5E-12 9.8E-17 121.5 8.9 137 443-637 1-138 (138)
328 TIGR03345 VI_ClpV1 type VI sec 99.3 1.6E-11 3.5E-16 150.3 15.7 182 440-678 187-386 (852)
329 PRK08058 DNA polymerase III su 99.3 3.4E-11 7.4E-16 132.6 16.8 156 42-217 3-179 (329)
330 PRK04132 replication factor C 99.3 2.1E-11 4.6E-16 145.8 16.2 161 69-265 568-737 (846)
331 PRK13531 regulatory ATPase Rav 99.3 2.6E-10 5.5E-15 127.4 23.5 214 45-279 21-278 (498)
332 PRK05642 DNA replication initi 99.3 4.3E-11 9.2E-16 125.3 16.2 159 471-691 46-208 (234)
333 PF00308 Bac_DnaA: Bacterial d 99.3 1.1E-11 2.4E-16 128.1 11.5 168 471-691 35-208 (219)
334 PRK08058 DNA polymerase III su 99.3 1.2E-11 2.7E-16 136.1 12.4 163 440-646 5-178 (329)
335 PF07726 AAA_3: ATPase family 99.3 6.3E-12 1.4E-16 114.0 7.8 105 472-592 1-112 (131)
336 TIGR00678 holB DNA polymerase 99.3 5.8E-11 1.3E-15 120.6 16.0 156 471-677 15-180 (188)
337 PRK12422 chromosomal replicati 99.3 2.8E-11 6E-16 137.7 14.7 172 471-698 142-317 (445)
338 KOG0740|consensus 99.3 1.9E-11 4E-16 133.8 12.4 198 437-691 150-363 (428)
339 PRK11331 5-methylcytosine-spec 99.3 2.2E-10 4.8E-15 126.8 20.9 171 441-644 176-366 (459)
340 KOG0732|consensus 99.3 4.1E-11 8.9E-16 142.6 15.8 231 440-734 265-522 (1080)
341 TIGR00362 DnaA chromosomal rep 99.3 2.7E-11 5.8E-16 138.3 13.3 173 471-696 137-315 (405)
342 PRK10733 hflB ATP-dependent me 99.3 3.5E-11 7.6E-16 143.8 14.8 133 472-652 187-337 (644)
343 KOG1942|consensus 99.3 5.1E-11 1.1E-15 120.2 13.5 103 543-678 297-399 (456)
344 COG1474 CDC6 Cdc6-related prot 99.3 3.7E-10 8E-15 124.8 21.7 210 45-271 18-249 (366)
345 PRK00149 dnaA chromosomal repl 99.3 2.7E-11 5.9E-16 139.9 13.4 170 471-693 149-324 (450)
346 KOG0744|consensus 99.3 9E-12 2E-16 127.6 8.2 144 472-654 179-344 (423)
347 TIGR00764 lon_rel lon-related 99.3 8E-11 1.7E-15 139.0 17.4 141 536-703 211-368 (608)
348 KOG0375|consensus 99.3 1.2E-11 2.6E-16 126.9 8.8 116 680-805 88-212 (517)
349 KOG0374|consensus 99.3 3.9E-12 8.5E-17 136.7 5.5 119 681-805 60-185 (331)
350 PF13177 DNA_pol3_delta2: DNA 99.3 1E-10 2.2E-15 114.9 14.6 143 48-208 1-162 (162)
351 KOG0743|consensus 99.2 6.6E-11 1.4E-15 128.3 13.8 169 472-700 237-432 (457)
352 KOG0372|consensus 99.2 1.2E-11 2.7E-16 121.0 7.4 118 679-805 42-168 (303)
353 TIGR02928 orc1/cdc6 family rep 99.2 2.3E-10 5.1E-15 129.4 18.5 219 440-699 15-251 (365)
354 COG0542 clpA ATP-binding subun 99.2 1.7E-10 3.6E-15 135.2 17.3 184 44-245 491-735 (786)
355 PRK14086 dnaA chromosomal repl 99.2 8.1E-11 1.8E-15 135.4 14.3 167 472-691 316-488 (617)
356 KOG2035|consensus 99.2 1.7E-10 3.6E-15 116.2 14.6 163 471-678 35-218 (351)
357 PRK06871 DNA polymerase III su 99.2 8.7E-11 1.9E-15 127.1 13.4 162 443-648 5-177 (325)
358 smart00763 AAA_PrkA PrkA AAA d 99.2 2.9E-10 6.2E-15 122.8 16.9 210 440-676 51-347 (361)
359 COG3829 RocR Transcriptional r 99.2 3.9E-11 8.5E-16 132.8 10.5 182 40-242 241-459 (560)
360 PRK13765 ATP-dependent proteas 99.2 1.8E-10 4E-15 135.1 16.2 143 537-703 221-377 (637)
361 PRK05707 DNA polymerase III su 99.2 6.3E-11 1.4E-15 129.4 11.5 142 471-648 23-176 (328)
362 PF05621 TniB: Bacterial TniB 99.2 5.2E-10 1.1E-14 117.2 17.8 226 35-270 25-272 (302)
363 COG4650 RtcR Sigma54-dependent 99.2 5.8E-11 1.2E-15 119.7 10.1 248 437-729 181-437 (531)
364 PTZ00111 DNA replication licen 99.2 8.5E-10 1.8E-14 131.2 21.5 199 431-651 441-658 (915)
365 PRK14087 dnaA chromosomal repl 99.2 9.6E-11 2.1E-15 133.8 13.1 171 471-691 142-319 (450)
366 COG0593 DnaA ATPase involved i 99.2 1.1E-09 2.5E-14 120.2 20.8 202 42-267 85-294 (408)
367 PRK08769 DNA polymerase III su 99.2 6.6E-10 1.4E-14 120.1 18.8 183 49-260 9-209 (319)
368 PRK00411 cdc6 cell division co 99.2 5.2E-10 1.1E-14 127.9 19.1 196 440-678 30-241 (394)
369 PRK08769 DNA polymerase III su 99.2 1.2E-10 2.6E-15 125.9 12.9 162 441-647 5-182 (319)
370 CHL00095 clpC Clp protease ATP 99.2 1.7E-10 3.6E-15 142.4 15.5 181 440-677 179-376 (821)
371 COG0714 MoxR-like ATPases [Gen 99.2 1.9E-10 4.2E-15 127.3 14.0 155 44-218 24-201 (329)
372 PRK05707 DNA polymerase III su 99.2 4.4E-10 9.6E-15 122.8 16.4 167 63-261 19-205 (328)
373 PRK14088 dnaA chromosomal repl 99.2 8.6E-11 1.9E-15 134.2 11.3 171 472-694 132-308 (440)
374 TIGR02974 phageshock_pspF psp 99.2 3.4E-10 7.4E-15 124.3 15.5 177 46-242 1-213 (329)
375 PRK11331 5-methylcytosine-spec 99.2 2.2E-10 4.8E-15 126.9 13.8 159 43-207 174-358 (459)
376 COG0470 HolB ATPase involved i 99.2 1.7E-10 3.7E-15 128.4 13.2 144 441-639 2-170 (325)
377 PRK07993 DNA polymerase III su 99.2 1.6E-10 3.5E-15 126.6 11.9 161 443-647 5-177 (334)
378 TIGR02031 BchD-ChlD magnesium 99.2 3.6E-10 7.7E-15 133.5 15.7 193 470-691 16-227 (589)
379 PRK06090 DNA polymerase III su 99.2 2.3E-10 4.9E-15 123.6 12.7 159 443-647 6-177 (319)
380 PRK06964 DNA polymerase III su 99.2 2.6E-10 5.6E-15 124.3 13.3 141 471-647 22-201 (342)
381 PRK09862 putative ATP-dependen 99.1 2.3E-10 4.9E-15 130.6 12.9 177 440-641 191-392 (506)
382 PRK10865 protein disaggregatio 99.1 6.6E-10 1.4E-14 136.8 17.7 183 43-243 567-807 (857)
383 PHA02244 ATPase-like protein 99.1 3.7E-10 8E-15 121.8 13.3 142 46-210 98-264 (383)
384 cd00009 AAA The AAA+ (ATPases 99.1 4.7E-10 1E-14 108.8 13.1 150 444-636 2-151 (151)
385 PF06068 TIP49: TIP49 C-termin 99.1 3.2E-09 6.8E-14 113.2 19.9 97 138-246 279-383 (398)
386 PRK11608 pspF phage shock prot 99.1 9.3E-10 2E-14 121.1 16.6 181 42-242 4-220 (326)
387 TIGR01817 nifA Nif-specific re 99.1 3.8E-10 8.3E-15 133.5 14.5 185 39-242 191-408 (534)
388 PF01078 Mg_chelatase: Magnesi 99.1 6.7E-11 1.4E-15 117.6 6.6 124 42-187 1-163 (206)
389 TIGR02442 Cob-chelat-sub cobal 99.1 1.1E-09 2.3E-14 131.0 18.1 160 43-218 3-212 (633)
390 smart00350 MCM minichromosome 99.1 1.1E-09 2.4E-14 127.8 17.7 199 431-651 194-401 (509)
391 PRK07993 DNA polymerase III su 99.1 1.3E-09 2.8E-14 119.5 17.0 179 50-261 8-206 (334)
392 PRK09087 hypothetical protein; 99.1 4.6E-10 9.9E-15 116.5 11.8 138 472-678 46-185 (226)
393 PRK06871 DNA polymerase III su 99.1 3.3E-09 7.1E-14 114.9 18.6 150 51-219 9-178 (325)
394 TIGR02329 propionate_PrpR prop 99.1 7.7E-10 1.7E-14 128.1 14.7 179 41-238 209-419 (526)
395 COG1219 ClpX ATP-dependent pro 99.1 1.2E-09 2.6E-14 112.2 14.3 169 64-243 96-346 (408)
396 PRK06620 hypothetical protein; 99.1 1E-09 2.2E-14 112.9 14.0 131 472-678 46-179 (214)
397 cd00009 AAA The AAA+ (ATPases 99.1 6.3E-10 1.4E-14 107.9 12.0 145 47-205 1-150 (151)
398 COG1239 ChlI Mg-chelatase subu 99.1 1E-09 2.2E-14 118.7 14.0 180 437-651 14-233 (423)
399 COG2204 AtoC Response regulato 99.1 2.6E-10 5.7E-15 127.0 9.7 182 41-242 138-354 (464)
400 KOG0373|consensus 99.1 2.1E-10 4.6E-15 110.2 7.7 118 679-805 45-171 (306)
401 PF05673 DUF815: Protein of un 99.1 3.3E-09 7E-14 107.7 16.6 176 440-652 27-209 (249)
402 COG1224 TIP49 DNA helicase TIP 99.1 1.7E-08 3.7E-13 105.4 22.1 115 138-269 292-414 (450)
403 PRK15424 propionate catabolism 99.1 1.3E-09 2.8E-14 126.0 14.9 185 41-237 216-433 (538)
404 TIGR03346 chaperone_ClpB ATP-d 99.1 1.7E-09 3.7E-14 133.9 16.7 181 44-242 565-803 (852)
405 COG3604 FhlA Transcriptional r 99.1 4.9E-10 1.1E-14 122.3 10.4 200 42-267 221-456 (550)
406 KOG0745|consensus 99.1 2.6E-09 5.6E-14 113.9 14.7 168 65-243 226-487 (564)
407 KOG2680|consensus 99.1 1.5E-09 3.2E-14 110.2 12.2 102 543-678 289-390 (454)
408 COG1221 PspF Transcriptional r 99.0 2.4E-09 5.1E-14 117.3 14.7 205 39-268 73-310 (403)
409 PRK05022 anaerobic nitric oxid 99.0 9.2E-09 2E-13 120.6 20.8 201 42-267 185-420 (509)
410 PRK06964 DNA polymerase III su 99.0 4.5E-09 9.8E-14 114.7 16.4 153 52-218 9-202 (342)
411 PRK15429 formate hydrogenlyase 99.0 6.1E-09 1.3E-13 126.8 19.2 182 41-242 373-589 (686)
412 PF03215 Rad17: Rad17 cell cyc 99.0 2.8E-09 6.1E-14 122.7 15.3 214 31-265 6-269 (519)
413 PF07728 AAA_5: AAA domain (dy 99.0 8E-11 1.7E-15 113.3 2.2 111 67-199 1-139 (139)
414 COG1474 CDC6 Cdc6-related prot 99.0 5.4E-09 1.2E-13 115.7 16.4 217 442-703 19-246 (366)
415 PRK11388 DNA-binding transcrip 99.0 3.1E-09 6.6E-14 128.7 15.5 183 41-242 322-534 (638)
416 PRK10820 DNA-binding transcrip 99.0 3.9E-09 8.6E-14 123.6 15.8 184 39-242 199-417 (520)
417 PRK12377 putative replication 99.0 1.4E-09 2.9E-14 113.7 10.6 106 472-597 103-210 (248)
418 PRK06090 DNA polymerase III su 99.0 7.1E-09 1.5E-13 112.1 16.3 150 50-217 9-177 (319)
419 PRK08116 hypothetical protein; 99.0 3.1E-09 6.7E-14 113.3 13.4 108 472-597 116-225 (268)
420 PF01637 Arch_ATPase: Archaeal 99.0 2.6E-09 5.7E-14 112.6 12.7 199 46-247 1-228 (234)
421 PRK05917 DNA polymerase III su 99.0 2.4E-09 5.1E-14 113.3 11.8 142 449-637 6-154 (290)
422 TIGR03015 pepcterm_ATPase puta 99.0 3.8E-08 8.2E-13 106.3 21.0 186 63-267 41-246 (269)
423 KOG0741|consensus 99.0 4.7E-10 1E-14 122.0 5.7 138 472-654 258-418 (744)
424 TIGR00764 lon_rel lon-related 99.0 1.5E-08 3.3E-13 119.9 18.8 119 138-267 218-371 (608)
425 COG1239 ChlI Mg-chelatase subu 99.0 1.2E-08 2.6E-13 110.4 16.3 165 42-221 15-233 (423)
426 KOG1969|consensus 99.0 8.5E-09 1.8E-13 116.9 15.5 168 472-699 328-515 (877)
427 PF00158 Sigma54_activat: Sigm 99.0 1.6E-09 3.5E-14 106.7 8.5 120 46-184 1-145 (168)
428 smart00350 MCM minichromosome 99.0 2.1E-08 4.5E-13 117.3 19.0 201 44-268 203-454 (509)
429 PF07726 AAA_3: ATPase family 99.0 7.2E-11 1.6E-15 107.2 -1.3 108 67-200 1-130 (131)
430 KOG0990|consensus 98.9 3.3E-09 7.1E-14 109.6 10.3 193 440-703 41-241 (360)
431 PF07724 AAA_2: AAA domain (Cd 98.9 1.5E-09 3.2E-14 107.2 7.0 110 64-184 2-131 (171)
432 COG0593 DnaA ATPase involved i 98.9 5.8E-09 1.3E-13 114.7 12.2 175 469-700 112-292 (408)
433 PRK08699 DNA polymerase III su 98.9 6.9E-09 1.5E-13 113.3 12.8 140 471-646 22-181 (325)
434 PRK07276 DNA polymerase III su 98.9 1.1E-08 2.4E-13 108.7 12.9 156 444-646 6-171 (290)
435 PF06309 Torsin: Torsin; Inte 98.9 4.2E-09 9.1E-14 95.6 8.2 67 431-499 16-82 (127)
436 COG1220 HslU ATP-dependent pro 98.9 3.4E-08 7.3E-13 102.5 15.5 106 138-244 251-382 (444)
437 TIGR00368 Mg chelatase-related 98.9 1.2E-08 2.6E-13 117.3 13.6 155 41-211 189-395 (499)
438 smart00763 AAA_PrkA PrkA AAA d 98.9 5.6E-08 1.2E-12 105.3 17.3 95 139-242 238-348 (361)
439 PRK08181 transposase; Validate 98.9 7E-09 1.5E-13 109.7 10.0 108 472-601 108-217 (269)
440 TIGR02031 BchD-ChlD magnesium 98.9 4.5E-08 9.7E-13 115.8 17.7 192 62-279 13-252 (589)
441 PRK08699 DNA polymerase III su 98.9 3.4E-08 7.3E-13 108.0 15.3 153 51-217 8-182 (325)
442 TIGR00602 rad24 checkpoint pro 98.9 2.1E-08 4.6E-13 117.5 14.3 219 440-698 84-327 (637)
443 PRK05818 DNA polymerase III su 98.9 1.2E-08 2.7E-13 105.3 10.8 136 471-642 8-152 (261)
444 PF01695 IstB_IS21: IstB-like 98.8 3.6E-09 7.7E-14 105.5 6.0 109 472-602 49-159 (178)
445 PRK06526 transposase; Provisio 98.8 7.3E-09 1.6E-13 109.1 8.4 109 472-603 100-211 (254)
446 PTZ00111 DNA replication licen 98.8 4.3E-08 9.4E-13 117.0 15.6 162 45-222 451-659 (915)
447 COG0606 Predicted ATPase with 98.8 5.7E-08 1.2E-12 106.7 14.6 149 42-212 177-384 (490)
448 PRK13765 ATP-dependent proteas 98.8 1.6E-07 3.6E-12 110.6 18.3 121 138-269 227-382 (637)
449 PF12775 AAA_7: P-loop contain 98.8 2.8E-08 6E-13 106.0 10.5 149 55-223 24-196 (272)
450 TIGR02915 PEP_resp_reg putativ 98.8 1.5E-07 3.2E-12 109.5 17.6 200 42-265 137-370 (445)
451 PRK06835 DNA replication prote 98.8 2.5E-08 5.4E-13 108.8 9.9 107 472-597 185-293 (329)
452 KOG1970|consensus 98.7 1.5E-07 3.3E-12 103.9 15.3 215 29-263 67-319 (634)
453 PRK07132 DNA polymerase III su 98.7 1.5E-07 3.2E-12 101.3 14.9 141 448-647 4-159 (299)
454 smart00382 AAA ATPases associa 98.7 6.1E-08 1.3E-12 93.1 11.0 126 65-206 2-146 (148)
455 TIGR03015 pepcterm_ATPase puta 98.7 3.4E-07 7.5E-12 98.8 17.8 174 472-678 45-228 (269)
456 COG1484 DnaC DNA replication p 98.7 6.6E-08 1.4E-12 102.0 11.8 111 472-603 107-219 (254)
457 PRK12377 putative replication 98.7 4.4E-08 9.5E-13 102.4 9.8 143 36-199 66-222 (248)
458 PRK05917 DNA polymerase III su 98.7 2.7E-07 5.9E-12 97.7 15.7 139 51-207 4-154 (290)
459 PF14532 Sigma54_activ_2: Sigm 98.7 9.4E-09 2E-13 98.5 4.2 130 47-208 1-137 (138)
460 KOG0478|consensus 98.7 8.5E-08 1.8E-12 108.1 12.2 184 434-640 423-616 (804)
461 PRK13406 bchD magnesium chelat 98.7 1.7E-07 3.7E-12 109.7 14.9 174 471-677 26-207 (584)
462 COG2607 Predicted ATPase (AAA+ 98.7 3.6E-07 7.8E-12 90.9 14.7 176 441-652 61-241 (287)
463 PRK08116 hypothetical protein; 98.7 2E-07 4.3E-12 99.5 14.1 159 35-209 76-251 (268)
464 PF13173 AAA_14: AAA domain 98.7 7E-08 1.5E-12 91.1 9.6 124 66-212 3-127 (128)
465 smart00382 AAA ATPases associa 98.7 9.6E-08 2.1E-12 91.7 10.8 118 472-592 4-125 (148)
466 PRK09183 transposase/IS protei 98.7 5E-08 1.1E-12 103.6 9.2 107 472-601 104-214 (259)
467 PRK10923 glnG nitrogen regulat 98.7 3.1E-07 6.6E-12 107.7 16.8 181 42-242 136-351 (469)
468 PRK07952 DNA replication prote 98.7 9.9E-08 2.2E-12 99.5 11.0 108 472-598 101-210 (244)
469 PRK07952 DNA replication prote 98.7 9.9E-08 2.2E-12 99.5 10.4 148 34-199 62-221 (244)
470 KOG0377|consensus 98.7 6.6E-09 1.4E-13 109.8 1.5 117 682-803 167-291 (631)
471 KOG1942|consensus 98.7 3.7E-07 8E-12 92.8 13.8 114 138-268 297-419 (456)
472 PRK09862 putative ATP-dependen 98.6 2.6E-07 5.7E-12 105.8 13.5 150 41-210 188-391 (506)
473 PRK15455 PrkA family serine pr 98.6 6.6E-07 1.4E-11 101.4 16.3 184 439-645 75-341 (644)
474 PRK07132 DNA polymerase III su 98.6 1.4E-06 3E-11 93.7 18.3 147 51-217 3-159 (299)
475 PRK15115 response regulator Gl 98.6 7.8E-07 1.7E-11 103.5 17.6 192 45-265 135-365 (444)
476 PF12775 AAA_7: P-loop contain 98.6 3.9E-07 8.5E-12 97.2 13.5 155 472-653 35-196 (272)
477 PRK08939 primosomal protein Dn 98.6 3.3E-07 7E-12 99.4 12.9 109 472-601 158-269 (306)
478 PRK07276 DNA polymerase III su 98.6 8.8E-07 1.9E-11 94.3 15.0 147 48-217 6-172 (290)
479 KOG2227|consensus 98.6 3.1E-07 6.8E-12 99.8 11.5 218 440-702 150-379 (529)
480 TIGR00040 yfcE phosphoesterase 98.5 3.9E-07 8.5E-12 89.6 10.3 61 683-748 4-64 (158)
481 PRK11361 acetoacetate metaboli 98.5 1.3E-06 2.8E-11 102.1 16.1 181 42-242 141-356 (457)
482 COG1241 MCM2 Predicted ATPase 98.5 1.2E-06 2.6E-11 102.4 15.0 200 433-652 279-485 (682)
483 TIGR01818 ntrC nitrogen regula 98.5 2.8E-06 6E-11 99.5 17.9 200 43-266 133-366 (463)
484 KOG2227|consensus 98.5 8.6E-06 1.9E-10 88.9 19.5 193 32-242 141-357 (529)
485 PRK06921 hypothetical protein; 98.5 1.8E-07 3.9E-12 99.5 6.8 104 472-598 119-230 (266)
486 PRK05818 DNA polymerase III su 98.5 5.6E-06 1.2E-10 85.8 17.4 125 63-207 5-147 (261)
487 PF00493 MCM: MCM2/3/5 family 98.4 1.9E-07 4.1E-12 103.0 5.8 198 435-652 19-223 (331)
488 PHA00729 NTP-binding motif con 98.4 9.7E-07 2.1E-11 89.8 10.4 125 56-218 8-138 (226)
489 PF13173 AAA_14: AAA domain 98.4 1.1E-06 2.3E-11 83.1 10.0 121 472-642 4-127 (128)
490 PF03215 Rad17: Rad17 cell cyc 98.4 8.9E-06 1.9E-10 94.1 19.1 217 445-699 24-268 (519)
491 KOG1514|consensus 98.4 5.9E-06 1.3E-10 94.3 16.8 222 25-267 380-628 (767)
492 PF05729 NACHT: NACHT domain 98.4 3.2E-06 7E-11 83.7 13.3 146 68-221 3-164 (166)
493 KOG0480|consensus 98.4 1.5E-06 3.3E-11 97.5 11.6 199 430-650 335-542 (764)
494 PRK08181 transposase; Validate 98.4 1.1E-06 2.5E-11 93.0 10.0 101 64-183 105-209 (269)
495 KOG2680|consensus 98.4 1.4E-05 2.9E-10 82.0 16.8 116 138-270 289-412 (454)
496 PRK10365 transcriptional regul 98.4 7.2E-06 1.6E-10 95.4 17.2 173 45-242 140-352 (441)
497 PRK06835 DNA replication prote 98.4 2.5E-06 5.5E-11 93.2 11.5 120 64-200 182-306 (329)
498 KOG1051|consensus 98.3 2E-06 4.4E-11 102.8 11.5 121 45-183 563-711 (898)
499 PF12774 AAA_6: Hydrolytic ATP 98.3 8.5E-06 1.9E-10 84.4 14.5 132 473-646 35-176 (231)
500 COG1618 Predicted nucleotide k 98.3 8.7E-06 1.9E-10 76.4 12.9 144 64-223 4-175 (179)
No 1
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9e-100 Score=871.23 Aligned_cols=634 Identities=61% Similarity=0.981 Sum_probs=584.9
Q ss_pred CCcccCCCCchhhhhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 11 NGKNILSQQDEEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 11 ~~~~~~~~~~~~~~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
.+....++.++...++|++|+++|++.+|.+.+|++||+++++++++++|++++++|.+|+|+||+|||.+|..+|.++.
T Consensus 137 ~~~~~~~~~~~~~~~~L~~y~~dlt~~Ar~gklDPvIGRd~EI~r~iqIL~RR~KNNPvLiGEpGVGKTAIvEGLA~rIv 216 (786)
T COG0542 137 GGNEVDSKNAEEDQDALEKYTRDLTELAREGKLDPVIGRDEEIRRTIQILSRRTKNNPVLVGEPGVGKTAIVEGLAQRIV 216 (786)
T ss_pred cccccCCcccccchhhHHHHhhhhHHHHhcCCCCCCcChHHHHHHHHHHHhccCCCCCeEecCCCCCHHHHHHHHHHHHh
Confidence 34466677778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC-chhHHhhhhhhc
Q psy14504 91 NGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG-SIDAGNMLKPEL 169 (951)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~-~~~~~~~L~~~l 169 (951)
.+++|..+.+..++++|++.+.+|.+|.|+++++++.+++++.... +.||||||+|.+.+++..+| +.++.|.|++.|
T Consensus 217 ~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL 295 (786)
T COG0542 217 NGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPAL 295 (786)
T ss_pred cCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHH
Confidence 9999999999999999999999999999999999999999999766 99999999999999988766 589999999999
Q ss_pred cCCcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhccc
Q psy14504 170 SRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISD 249 (951)
Q Consensus 170 e~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~ 249 (951)
.+|.+.+|||||..+|+++++.|++|.|||+.|.+..|+.++...||+.+..+|+.+|++.++++++.+++.+|.+|+++
T Consensus 296 ARGeL~~IGATT~~EYRk~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~d 375 (786)
T COG0542 296 ARGELRCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPD 375 (786)
T ss_pred hcCCeEEEEeccHHHHHHHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCchhHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14504 250 RFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWK 329 (951)
Q Consensus 250 ~~~p~~a~~ll~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 329 (951)
|++|++|++++|+||+..++... .|..+..+++++.++..|.+++..+.+..
T Consensus 376 R~LPDKAIDLiDeA~a~~~l~~~-~p~~l~~~~~~~~~l~~e~~~~~~e~~~~--------------------------- 427 (786)
T COG0542 376 RFLPDKAIDLLDEAGARVRLEID-KPEELDELERELAQLEIEKEALEREQDEK--------------------------- 427 (786)
T ss_pred CCCCchHHHHHHHHHHHHHhccc-CCcchhHHHHHHHHHHHHHHHHhhhhhHH---------------------------
Confidence 99999999999999999999988 99999999999999999988877765400
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHH
Q psy14504 330 YEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIA 409 (951)
Q Consensus 330 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~ 409 (951)
++.... .+..+ ....++.+++.+. . .|+.++|+
T Consensus 428 -~k~~~~-------~~~~~-------------------~~~~~~~~~~~~~-------------------~-~v~~~~Ia 460 (786)
T COG0542 428 -EKKLID-------EIIKL-------------------KEGRIPELEKELE-------------------A-EVDEDDIA 460 (786)
T ss_pred -HHHHHH-------HHHHH-------------------hhhhhhhHHHHHh-------------------h-ccCHHHHH
Confidence 000000 00000 0022333333221 1 28999999
Q ss_pred HHHHHhhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHH
Q psy14504 410 EIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKT 489 (951)
Q Consensus 410 ~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~ 489 (951)
++++.|+|+|+.++...+...+.++++.|.+.|+||++|+..+..++++.+.|+.+|.+|.+++||.||+|||||++|++
T Consensus 461 ~vv~~~TgIPv~~l~~~e~~kll~le~~L~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAka 540 (786)
T COG0542 461 EVVARWTGIPVAKLLEDEKEKLLNLERRLKKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKA 540 (786)
T ss_pred HHHHHHHCCChhhhchhhHHHHHHHHHHHhcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcc
Q psy14504 490 LSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDG 569 (951)
Q Consensus 490 la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g 569 (951)
||..+|+....++++|||+|.+++++++|+|+||||+||++++.+++++++.|++||+||||+|+||+++|.|||+||+|
T Consensus 541 LA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDdG 620 (786)
T COG0542 541 LAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDDG 620 (786)
T ss_pred HHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCceeccccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCeEeecCCeEEEEecCCCchhhhhhccc----cHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHH
Q psy14504 570 RLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG----DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSI 645 (951)
Q Consensus 570 ~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~----~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i 645 (951)
+++|+.|++++|+|++||||||.|+..+.+.... ....+.+.+++.++..|+|+|++|+|.+|+|.||+++++.+|
T Consensus 621 rLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~I 700 (786)
T COG0542 621 RLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERI 700 (786)
T ss_pred eeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHH
Confidence 9999999999999999999999999988776542 356778889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEe
Q psy14504 646 ANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSL 725 (951)
Q Consensus 646 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~ 725 (951)
+...+.++..++..+++.+.+++++.++|++.+|++.||+|.+.+. +++.+ .++.+..++.|.+.+.+...+
T Consensus 701 v~~~L~~l~~~L~~~~i~l~~s~~a~~~l~~~gyd~~~GARpL~R~---Iq~~i-----~~~La~~iL~g~~~~~~~v~v 772 (786)
T COG0542 701 VDLQLNRLAKRLAERGITLELSDEAKDFLAEKGYDPEYGARPLRRA---IQQEI-----EDPLADEILFGKIEDGGTVKV 772 (786)
T ss_pred HHHHHHHHHHHHHhCCceEEECHHHHHHHHHhccCCCcCchHHHHH---HHHHH-----HHHHHHHHHhcccCCCcEEEE
Confidence 9999999999999889999999999999999999999999999999 88888 578888999999999777766
Q ss_pred hhH
Q psy14504 726 DTL 728 (951)
Q Consensus 726 ~~l 728 (951)
.+-
T Consensus 773 ~~~ 775 (786)
T COG0542 773 DVD 775 (786)
T ss_pred Eec
Confidence 554
No 2
>PRK10865 protein disaggregation chaperone; Provisional
Probab=100.00 E-value=4e-86 Score=802.48 Aligned_cols=693 Identities=59% Similarity=0.968 Sum_probs=644.0
Q ss_pred hhhhhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCC
Q psy14504 21 EEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLS 100 (951)
Q Consensus 21 ~~~~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~ 100 (951)
+...++|++||+||++++||++++++|||+.++++++++|+++.++|++|+||||||||++|+.+|..+..+.+|..+.+
T Consensus 155 ~~~~~~l~~~~~~l~~~~r~~~l~~vigr~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~ 234 (857)
T PRK10865 155 EDQRQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 234 (857)
T ss_pred ccchhHHHHHhhhHHHHHhcCCCCcCCCCHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCC
Confidence 34567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEee
Q psy14504 101 KKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGAT 180 (951)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at 180 (951)
.+++.++++.+.++.++.|+++.+++.+|.++....+++||||||+|.|.+++.+.++.++++.|++.+++|.+.+|++|
T Consensus 235 ~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l~~g~l~~IgaT 314 (857)
T PRK10865 235 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGAT 314 (857)
T ss_pred CEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchhhcCCCeEEEcC
Confidence 99999999999999999999999999999997656678999999999999888777788899999999999999999999
Q ss_pred cchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHH
Q psy14504 181 TLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLI 260 (951)
Q Consensus 181 ~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll 260 (951)
|.++|++++..|+++.|||+.|.++.|+.+++..||+.+..+++.++++.++++++..++.++.+|++++++|++|++++
T Consensus 315 t~~e~r~~~~~d~al~rRf~~i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~~~~~~pdkAi~Li 394 (857)
T PRK10865 315 TLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYIADRQLPDKAIDLI 394 (857)
T ss_pred CCHHHHHHhhhcHHHHhhCCEEEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccccCCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14504 261 DEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQ 340 (951)
Q Consensus 261 ~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (951)
+.+++..++.....|..++++++.+..+..|.+.+..+.+..+..|+..+++++++.++++..+...|..+++.+.+...
T Consensus 395 D~aaa~~rl~~~~kp~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~ 474 (857)
T PRK10865 395 DEAASSIRMQIDSKPEELDRLDRRIIQLKLEQQALMKESDEASKKRLDMLNEELSDKERQYSELEEEWKAEKASLSGTQT 474 (857)
T ss_pred HHHhcccccccccChHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 99999999988899999999999999999999999888888888899999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCC
Q psy14504 341 IKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPV 420 (951)
Q Consensus 341 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~ 420 (951)
...++++++.+++.+...+++..+.++.+..++.++..+........ ....++.+.|+.++|+.+++.|+|+|+
T Consensus 475 ~~~ele~l~~kie~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~~~i~~vv~~~tgip~ 548 (857)
T PRK10865 475 IKAELEQAKIAIEQARRVGDLARMSELQYGKIPELEKQLAAATQLEG------KTMRLLRNKVTDAEIAEVLARWTGIPV 548 (857)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhhHHHhhhhhhHHHHHHHHHHHhhhc------cccccccCccCHHHHHHHHHHHHCCCc
Confidence 88899999999999999999999999999999999888766544311 134566788999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc
Q psy14504 421 SKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES 500 (951)
Q Consensus 421 ~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~ 500 (951)
.++...+...+.++++.|.+.|+||+.+++.+...+.+.+.|+.+|.+|.+++||+||||||||++|++||+.+++.+.+
T Consensus 549 ~~~~~~~~~~l~~l~~~l~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~ 628 (857)
T PRK10865 549 SRMLESEREKLLRMEQELHHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDA 628 (857)
T ss_pred hhhhhhHHHHHHHHHHHhCCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCc
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999988889
Q ss_pred eEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEee
Q psy14504 501 IIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN 580 (951)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~ 580 (951)
+++++|++|...+..++++|.++||+|+.+++.+++.++..+++||||||++++++.+++.|+++|++|.++++.|+.++
T Consensus 629 ~i~id~se~~~~~~~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 629 MVRIDMSEFMEKHSVSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred EEEEEhHHhhhhhhHHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHhhCceecCCceEEe
Confidence 99999999998888899999999999999988899999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCchhhhhhccc-cHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHh
Q psy14504 581 FRNTIIVMTSNLGSDKIKEMEKG-DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 659 (951)
Q Consensus 581 ~~~~iiI~ttn~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~ 659 (951)
+++++||+|||.+...+.+.++. ....+...+...+.+.|+|+|++|+|.++.|.|++++++.+|++..+.++..+++.
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~ 788 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEE 788 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998876655443 34555667778888999999999999999999999999999999999999888877
Q ss_pred cCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehh
Q psy14504 660 MNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 727 (951)
Q Consensus 660 ~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~ 727 (951)
.++.+.++++++++|+.++|++.||+|.|.++ +++.+ .++.+..++.|.+.++++..+.+
T Consensus 789 ~gi~l~is~~al~~L~~~gy~~~~GARpL~r~---I~~~i-----~~~la~~iL~g~~~~~~~~~~~~ 848 (857)
T PRK10865 789 RGYEIHISDEALKLLSENGYDPVYGARPLKRA---IQQQI-----ENPLAQQILSGELVPGKVIRLEV 848 (857)
T ss_pred CCCcCcCCHHHHHHHHHcCCCccCChHHHHHH---HHHHH-----HHHHHHHHHcCcCCCCCEEEEEE
Confidence 78889999999999999999999999999999 88888 56778889999999998887654
No 3
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=100.00 E-value=5.1e-85 Score=789.31 Aligned_cols=674 Identities=42% Similarity=0.696 Sum_probs=598.5
Q ss_pred hhhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14504 23 HIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 102 (951)
Q Consensus 23 ~~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~ 102 (951)
..++|++|++||++++||++++++|||+.++++++++|+++..+|+||+||||||||++|+.+|+.+..+.+|..+.+.+
T Consensus 166 ~~~~l~~~~~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~ 245 (852)
T TIGR03345 166 GTSALDQYTTDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVR 245 (852)
T ss_pred chhhHHHHhhhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCe
Confidence 45799999999999999999999999999999999999999999999999999999999999999999889999999999
Q ss_pred EEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecc
Q psy14504 103 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTL 182 (951)
Q Consensus 103 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~ 182 (951)
++.++++.+.++.++.|+++.+++.++.++.....++||||||+|.|.+.+.+.+++++.+.|++.+++|.+.+|+|||.
T Consensus 246 i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~l~~IgaTT~ 325 (852)
T TIGR03345 246 LLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGELRTIAATTW 325 (852)
T ss_pred EEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCCeEEEEecCH
Confidence 99999999998999999999999999999976667899999999999987766666788899999999999999999999
Q ss_pred hHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHH
Q psy14504 183 NEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 262 (951)
Q Consensus 183 ~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 262 (951)
++|.+++.+|++|.|||..|.|++|+.+++..||+.+...++.++++.++++++..++.++.+|++++++|++|++++++
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~LPDKAIdllde 405 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQLPDKAVSLLDT 405 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccCccHHHHHHHH
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred HHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14504 263 AAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDE--SSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQ 340 (951)
Q Consensus 263 a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (951)
||+..++...+.|..+..+++.+..+..+...+..+... ....+..++++++..+..++..+...|..++........
T Consensus 406 a~a~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 485 (852)
T TIGR03345 406 ACARVALSQNATPAALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILA 485 (852)
T ss_pred HHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHhhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999988889999999999999999998888554321 223466778888999999999999999988765543332
Q ss_pred HHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCC
Q psy14504 341 IKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPV 420 (951)
Q Consensus 341 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~ 420 (951)
.+.+.... ........+..+..++.++..+..... +..+....|+.++|..+++.|+|||+
T Consensus 486 ~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~v~~~~i~~vv~~~tgip~ 546 (852)
T TIGR03345 486 LRAELEAD---------ADAPADDDAALRAQLAELEAALASAQG----------EEPLVFPEVDAQAVAEVVADWTGIPV 546 (852)
T ss_pred HHHHhhhc---------ccchhhhhHHHHHHHHHHHHHHHHHhh----------ccccccceecHHHHHHHHHHHHCCCc
Confidence 22221110 011123334445556666666554443 23455678999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc
Q psy14504 421 SKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES 500 (951)
Q Consensus 421 ~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~ 500 (951)
.++...+...+.++++.|.+.|+||+.+++.+..++.+.+.|+.+|.+|.+++||+||||||||++|++||+.+++....
T Consensus 547 ~~~~~~e~~~l~~l~~~L~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~ 626 (852)
T TIGR03345 547 GRMVRDEIEAVLSLPDRLAERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQN 626 (852)
T ss_pred hhhchhHHHHHHHHHHHhcCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988889
Q ss_pred eEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEee
Q psy14504 501 IIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN 580 (951)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~ 580 (951)
++++||++|.+.+++++++|.++||+|+.+++.+++.++..|++||+||||+++++.+++.|+++|++|.++|+.|+.++
T Consensus 627 ~~~~dmse~~~~~~~~~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd 706 (852)
T TIGR03345 627 LITINMSEFQEAHTVSRLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREID 706 (852)
T ss_pred eEEEeHHHhhhhhhhccccCCCCCcccccccchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCchhhhhhccc-----cHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHH
Q psy14504 581 FRNTIIVMTSNLGSDKIKEMEKG-----DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKN 655 (951)
Q Consensus 581 ~~~~iiI~ttn~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~ 655 (951)
+++++||+|||.+...+.+.+.+ ....+...+.+.+...|+|+|++|++ +|+|.||+.+++.+|+...+.++..
T Consensus 707 ~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~ 785 (852)
T TIGR03345 707 FKNTVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIAR 785 (852)
T ss_pred ccccEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999888775433 24566778888999999999999996 9999999999999999999999988
Q ss_pred HHHhc-CCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceE
Q psy14504 656 KLLKM-NMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQS 724 (951)
Q Consensus 656 ~~~~~-~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~ 724 (951)
++... ++.+.++++++++|++.+|++.||+|.+.+. +++.+ .++.+..++.|-.-...+..
T Consensus 786 rl~~~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~---Ie~~i-----~~~la~~~l~~~~~~~~~~~ 847 (852)
T TIGR03345 786 RLKENHGAELVYSEALVEHIVARCTEVESGARNIDAI---LNQTL-----LPELSRQILERLAAGEPIER 847 (852)
T ss_pred HHHHhcCceEEECHHHHHHHHHHcCCCCCChHHHHHH---HHHHH-----HHHHHHHHHhChhcCCCeeE
Confidence 88765 8999999999999999999999999999999 77777 45666777776665555444
No 4
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=100.00 E-value=9.9e-84 Score=786.71 Aligned_cols=695 Identities=61% Similarity=0.987 Sum_probs=639.7
Q ss_pred hhhhhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCC
Q psy14504 21 EEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLS 100 (951)
Q Consensus 21 ~~~~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~ 100 (951)
+...++|++||++|++++||+.++++|||++++++++++|+++.++|++|+||||||||++|+.+|..+..+.+|..+.+
T Consensus 150 ~~~~~~l~~~~~~l~~~~~~~~~~~~igr~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~ 229 (852)
T TIGR03346 150 EDQYEALEKYARDLTERAREGKLDPVIGRDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKN 229 (852)
T ss_pred ccchhHHHHHhhhHHHHhhCCCCCcCCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcC
Confidence 34568999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEee
Q psy14504 101 KKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGAT 180 (951)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at 180 (951)
.+++.++++.+.++.+|.|+++.+++.++.++....+++||||||+|.|.+.+...++.++.+.|++.++++.+.+|++|
T Consensus 230 ~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g~i~~IgaT 309 (852)
T TIGR03346 230 KRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARGELHCIGAT 309 (852)
T ss_pred CeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcCceEEEEeC
Confidence 99999999999988999999999999999999766678999999999999877666667889999999999999999999
Q ss_pred cchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHH
Q psy14504 181 TLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLI 260 (951)
Q Consensus 181 ~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll 260 (951)
|.++|++++..|+++.|||+.|.++.|+.+++..||+.+..+++.++++.++++++..++.++.+|++++++|++|++++
T Consensus 310 t~~e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~lPdkAidll 389 (852)
T TIGR03346 310 TLDEYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFLPDKAIDLI 389 (852)
T ss_pred cHHHHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14504 261 DEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQ 340 (951)
Q Consensus 261 ~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (951)
++||+.++......|..+..+++++..+..+.+.+..+.+.....|+..+++++.++..++..+...|..+.........
T Consensus 390 d~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 469 (852)
T TIGR03346 390 DEAAARIRMEIDSKPEELDELDRRIIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQ 469 (852)
T ss_pred HHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988889999999999999999999999777666677889999999999999999999999999998888877
Q ss_pred HHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCC
Q psy14504 341 IKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPV 420 (951)
Q Consensus 341 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~ 420 (951)
...++...+.++..+...+++.++.++.+..++.+++.+.......... ....+....|+.++|..+++.|+|+|+
T Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~~v~~~~i~~v~~~~tgip~ 545 (852)
T TIGR03346 470 IKEEIEQVRLELEQAEREGDLAKAAELQYGKLPELEKRLQAAEAKLGEE----TKPRLLREEVTAEEIAEVVSRWTGIPV 545 (852)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHhhhcchHHHHHHHHHHHHHhhhc----cccccccCCcCHHHHHHHHHHhcCCCc
Confidence 7777777777777788888888898988888988888876655431110 023456678999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc
Q psy14504 421 SKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES 500 (951)
Q Consensus 421 ~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~ 500 (951)
..+...+...+.+++..|.+.|+||+.+++.+..++.+.+.|+.+|.+|.+++||+||||||||++|++||+.+++.+.+
T Consensus 546 ~~~~~~e~~~l~~l~~~l~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~ 625 (852)
T TIGR03346 546 SKMLEGEREKLLHMEEVLHERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDA 625 (852)
T ss_pred ccccHHHHHHHHHHHHHhhcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998899
Q ss_pred eEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEee
Q psy14504 501 IIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN 580 (951)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~ 580 (951)
++++||++|...+..++++|.++||+|+.+++.+++.++..|++|||||||+++++++++.|+++|++|.++|..|+.++
T Consensus 626 ~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd 705 (852)
T TIGR03346 626 MVRIDMSEYMEKHSVARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVD 705 (852)
T ss_pred EEEEechhhcccchHHHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCchhhhhhccc-cHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHh
Q psy14504 581 FRNTIIVMTSNLGSDKIKEMEKG-DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 659 (951)
Q Consensus 581 ~~~~iiI~ttn~~~~~~~~~~~~-~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~ 659 (951)
+++++||+|||.+...+.+..+. +...+...+++.+.+.|+|+|++|||.++.|.|++++++.+|+...+..+..++..
T Consensus 706 ~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~ 785 (852)
T TIGR03346 706 FRNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAE 785 (852)
T ss_pred cCCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999876664332 45666777888899999999999999999999999999999999999999998888
Q ss_pred cCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehh
Q psy14504 660 MNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 727 (951)
Q Consensus 660 ~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~ 727 (951)
.++.+.++++++++|++.+|++.+|+|.|.+. +++.+ .++.+..++.|.+.++++..+.+
T Consensus 786 ~~~~l~i~~~a~~~L~~~~~~~~~gaR~L~~~---i~~~i-----~~~l~~~~l~~~~~~~~~~~~~~ 845 (852)
T TIGR03346 786 RKITLELSDAALDFLAEAGYDPVYGARPLKRA---IQREI-----ENPLAKKILAGEVADGDTIVVDV 845 (852)
T ss_pred CCCeecCCHHHHHHHHHhCCCCCCCchhHHHH---HHHHH-----HHHHHHHHHhCCCCCCCEEEEEe
Confidence 88889999999999999999999999999999 88888 67888889999999888877654
No 5
>CHL00095 clpC Clp protease ATP binding subunit
Probab=100.00 E-value=1e-80 Score=758.63 Aligned_cols=632 Identities=51% Similarity=0.821 Sum_probs=563.7
Q ss_pred hhhhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14504 22 EHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 101 (951)
Q Consensus 22 ~~~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~ 101 (951)
...+.|++|+++|+++++.+.+++++|+++++++++++|+++.++|+||+||||||||++|+.+|..+..+.+|..+.+.
T Consensus 157 ~~~~~l~~~~~~l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~ 236 (821)
T CHL00095 157 SKTPTLEEFGTNLTKEAIDGNLDPVIGREKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDK 236 (821)
T ss_pred ccchHHHHHHHHHHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeec
Q psy14504 102 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATT 181 (951)
Q Consensus 102 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~ 181 (951)
+++.++++.+.+|.+|.|+++.+++.+++++.. .+++||||||+|.|++.+...++.++.+.|++.+++|.+.+|++||
T Consensus 237 ~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~-~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~l~~IgaTt 315 (821)
T CHL00095 237 LVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE-NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATT 315 (821)
T ss_pred eEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh-cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCCcEEEEeCC
Confidence 999999999999999999999999999999974 4688999999999998776666678899999999999999999999
Q ss_pred chHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHH
Q psy14504 182 LNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 261 (951)
Q Consensus 182 ~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 261 (951)
.++|++++..+++|.+||..|.++.|+.++...|++.+...++..+++.++++++..++.++.+|++++++|++|+++++
T Consensus 316 ~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lPdkaidlld 395 (821)
T CHL00095 316 LDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLPDKAIDLLD 395 (821)
T ss_pred HHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCchHHHHHHH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred HHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14504 262 EAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQI 341 (951)
Q Consensus 262 ~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (951)
+|++.++......|..+..+++.+..+..+.+.+..+.+. ++...++.+..+++.++..+...|..++.
T Consensus 396 ~a~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 464 (821)
T CHL00095 396 EAGSRVRLINSRLPPAARELDKELREILKDKDEAIREQDF---ETAKQLRDREMEVRAQIAAIIQSKKTEEE-------- 464 (821)
T ss_pred HHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhCcch---HHHHHHHHHHHHHHHHHHHHHHHHHhhhc--------
Confidence 9999999888888888888888888887776665444322 11122222222222222222222221100
Q ss_pred HHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCCc
Q psy14504 342 KEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVS 421 (951)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~ 421 (951)
.......|+.+||..+++.|+|+|+.
T Consensus 465 ------------------------------------------------------~~~~~~~v~~~~i~~~~~~~tgip~~ 490 (821)
T CHL00095 465 ------------------------------------------------------KRLEVPVVTEEDIAEIVSAWTGIPVN 490 (821)
T ss_pred ------------------------------------------------------ccccCCccCHHHHHHHHHHHHCCCch
Confidence 01113569999999999999999999
Q ss_pred ccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce
Q psy14504 422 KIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 501 (951)
Q Consensus 422 ~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~ 501 (951)
++...+...+.++++.|.+.|+||+.|++.+..++.+.+.|+.+|.+|.+++||+||||||||++|++||+.+|+...++
T Consensus 491 ~~~~~~~~~l~~l~~~L~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~ 570 (821)
T CHL00095 491 KLTKSESEKLLHMEETLHKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAM 570 (821)
T ss_pred hhchhHHHHHHHHHHHhcCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred EEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeec
Q psy14504 502 IRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINF 581 (951)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~ 581 (951)
+++|+++|.+.+++++++|+++||+|+++.+.+++.++..|++||+|||+|++++++++.|+++|++|.++|..|+.+++
T Consensus 571 ~~~d~s~~~~~~~~~~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~ 650 (821)
T CHL00095 571 IRLDMSEYMEKHTVSKLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDF 650 (821)
T ss_pred EEEEchhccccccHHHhcCCCCcccCcCccchHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCchhhhhh-----cc-------c-cHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHH
Q psy14504 582 RNTIIVMTSNLGSDKIKEM-----EK-------G-DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI 648 (951)
Q Consensus 582 ~~~iiI~ttn~~~~~~~~~-----~~-------~-~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~ 648 (951)
++++||+|||.+...+... +. + .+..+...+.+.+...|+|+|++|+|.+|+|.||+.+++.+|+..
T Consensus 651 ~~~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 651 KNTLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred CceEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHH
Confidence 9999999999998765431 11 1 245567778888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehh
Q psy14504 649 QLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 727 (951)
Q Consensus 649 ~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~ 727 (951)
.+.++..++..+++.+.+++++.++|++.+|++.||+|.|+++ +++.+ .++.+..++.|.+..+++..+.+
T Consensus 731 ~l~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~---i~~~i-----~~~l~~~~l~~~~~~g~~v~~~~ 801 (821)
T CHL00095 731 MLKNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRA---IMRLL-----EDPLAEEVLSFKIKPGDIIIVDV 801 (821)
T ss_pred HHHHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHH---HHHHH-----HHHHHHHHHhCccCCCCEEEEEE
Confidence 9999999998889999999999999999999999999999999 88888 56778889999998888887765
No 6
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-77 Score=709.29 Aligned_cols=569 Identities=46% Similarity=0.758 Sum_probs=518.9
Q ss_pred hhhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14504 23 HIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 102 (951)
Q Consensus 23 ~~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~ 102 (951)
...+|++|+++|+++++.+++++++|+++++++++++|++..++|+||+||||||||++|+.+|..+....+|..+.++.
T Consensus 165 ~~~~l~~~~~~l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~ 244 (758)
T PRK11034 165 GEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCT 244 (758)
T ss_pred chhHHHHHHHhHHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCe
Confidence 34699999999999999999999999999999999999999999999999999999999999999998888999999999
Q ss_pred EEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC-CCchhHHhhhhhhccCCcEEEEEeec
Q psy14504 103 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV-EGSIDAGNMLKPELSRGELHCIGATT 181 (951)
Q Consensus 103 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~-~~~~~~~~~L~~~le~~~i~vI~at~ 181 (951)
++.++++.+.+|.++.|+++.+++.++..+.. .+++||||||+|.|.+.+.. .++.++.+.|+++++++.+.+|++||
T Consensus 245 ~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~-~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g~i~vIgATt 323 (758)
T PRK11034 245 IYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ-DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTT 323 (758)
T ss_pred EEeccHHHHhcccchhhhHHHHHHHHHHHHHh-cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCCCeEEEecCC
Confidence 99999999999999999999999999999874 45789999999999987753 44567889999999999999999999
Q ss_pred chHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHH
Q psy14504 182 LNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 261 (951)
Q Consensus 182 ~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 261 (951)
.++|++++..|++|.|||+.|.+++|+.+++..||+.+..+|+.++++.++++++..++.++.+|++++++|++++++++
T Consensus 324 ~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lPdKaidlld 403 (758)
T PRK11034 324 YQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVID 403 (758)
T ss_pred hHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccChHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q psy14504 262 EAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQI 341 (951)
Q Consensus 262 ~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (951)
+||+..+.....
T Consensus 404 ea~a~~~~~~~~-------------------------------------------------------------------- 415 (758)
T PRK11034 404 EAGARARLMPVS-------------------------------------------------------------------- 415 (758)
T ss_pred HHHHhhccCccc--------------------------------------------------------------------
Confidence 999765421000
Q ss_pred HHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCCc
Q psy14504 342 KEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVS 421 (951)
Q Consensus 342 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~ 421 (951)
. .+..|+.+||.++++.|+|+|..
T Consensus 416 -----------------------------------------------------~---~~~~v~~~~i~~v~~~~tgip~~ 439 (758)
T PRK11034 416 -----------------------------------------------------K---RKKTVNVADIESVVARIARIPEK 439 (758)
T ss_pred -----------------------------------------------------c---cccccChhhHHHHHHHHhCCChh
Confidence 0 01237788999999999999999
Q ss_pred ccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce
Q psy14504 422 KIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 501 (951)
Q Consensus 422 ~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~ 501 (951)
.+...+...+.+++..|.+.|+||+++++.+..++...+.|+..+.+|.+++||+||||||||++|+++|+.+ +.++
T Consensus 440 ~~~~~~~~~l~~l~~~L~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l---~~~~ 516 (758)
T PRK11034 440 SVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GIEL 516 (758)
T ss_pred hhhhhHHHHHHHHHHHhcceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh---CCCc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 5799
Q ss_pred EEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeec
Q psy14504 502 IRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINF 581 (951)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~ 581 (951)
+.+||++|.+.+..++++|.++||+|+..++.+++.++..+++||||||||++++++++.|+++|++|.+++..|+++++
T Consensus 517 i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~ 596 (758)
T PRK11034 517 LRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADF 596 (758)
T ss_pred EEeechhhcccccHHHHcCCCCCcccccccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecC
Confidence 99999999999999999999999999999899999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEecCCCchhhhhh-ccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhc
Q psy14504 582 RNTIIVMTSNLGSDKIKEM-EKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 660 (951)
Q Consensus 582 ~~~iiI~ttn~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~ 660 (951)
++++||+|||.+...+... .+.........+.+.++..|+|+|++|+|.+|.|+||+.+++.+|+...+.++..+++..
T Consensus 597 rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~ 676 (758)
T PRK11034 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQK 676 (758)
T ss_pred CCcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 9999999999987654432 111111112345567788999999999999999999999999999999999999999999
Q ss_pred CCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehh
Q psy14504 661 NMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 727 (951)
Q Consensus 661 ~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~ 727 (951)
++.+.++++++++|++.+|++.||+|+|.+. +++.+ .++.+..++.|.+.++++..+.+
T Consensus 677 ~i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~---i~~~l-----~~~la~~il~~~~~~~~~~~v~~ 735 (758)
T PRK11034 677 GVSLEVSQEARDWLAEKGYDRAMGARPMARV---IQDNL-----KKPLANELLFGSLVDGGQVTVAL 735 (758)
T ss_pred CCCceECHHHHHHHHHhCCCCCCCCchHHHH---HHHHH-----HHHHHHHHHhCcccCCCEEEEEE
Confidence 9999999999999999999999999999999 88888 67888889999999888877654
No 7
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=100.00 E-value=2e-77 Score=722.29 Aligned_cols=568 Identities=50% Similarity=0.816 Sum_probs=521.0
Q ss_pred hhhhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14504 22 EHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 101 (951)
Q Consensus 22 ~~~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~ 101 (951)
...++|++|++||++++||++++++|||++++++++++|+++.++|+||+||||||||++|+++|+.+..+.+|..+.++
T Consensus 160 ~~~~~l~~~~~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~ 239 (731)
T TIGR02639 160 KQEDALEKYTVDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNA 239 (731)
T ss_pred cchhHHHHHhhhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC-CCchhHHhhhhhhccCCcEEEEEee
Q psy14504 102 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV-EGSIDAGNMLKPELSRGELHCIGAT 180 (951)
Q Consensus 102 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~-~~~~~~~~~L~~~le~~~i~vI~at 180 (951)
+++.++++.+.++.++.|+++.+++.+++++... .++||||||+|.|++.+.. +++.++++.|++.+++|.+.+|++|
T Consensus 240 ~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~i~~IgaT 318 (731)
T TIGR02639 240 KIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE-PNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGKLRCIGST 318 (731)
T ss_pred eEEEecHHHHhhhccccchHHHHHHHHHHHHhcc-CCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCCeEEEEec
Confidence 9999999999999999999999999999999744 5889999999999987653 3346788999999999999999999
Q ss_pred cchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHH
Q psy14504 181 TLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLI 260 (951)
Q Consensus 181 ~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll 260 (951)
|..+|.+++..|+++.|||+.|+|++|+.+++..||+.+...++..+++.++++++..++.++.+|++++++|++|++++
T Consensus 319 t~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~P~kai~ll 398 (731)
T TIGR02639 319 TYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFLPDKAIDVI 398 (731)
T ss_pred CHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccCCHHHHHHH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred HHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q psy14504 261 DEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQ 340 (951)
Q Consensus 261 ~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (951)
+++++..+.+....
T Consensus 399 d~a~a~~~~~~~~~------------------------------------------------------------------ 412 (731)
T TIGR02639 399 DEAGASFRLRPKAK------------------------------------------------------------------ 412 (731)
T ss_pred HHhhhhhhcCcccc------------------------------------------------------------------
Confidence 99987654321000
Q ss_pred HHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCC
Q psy14504 341 IKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPV 420 (951)
Q Consensus 341 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~ 420 (951)
-+..|+.+||..+++.|+|+|+
T Consensus 413 ----------------------------------------------------------~~~~v~~~~i~~~i~~~tgiP~ 434 (731)
T TIGR02639 413 ----------------------------------------------------------KKANVSVKDIENVVAKMAHIPV 434 (731)
T ss_pred ----------------------------------------------------------cccccCHHHHHHHHHHHhCCCh
Confidence 0134889999999999999999
Q ss_pred cccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc
Q psy14504 421 SKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES 500 (951)
Q Consensus 421 ~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~ 500 (951)
..+...+...+.+++..|.+.|+||+++++.+..++...+.|+.+|.+|.+++||+||||||||++|++||+.+ +.+
T Consensus 435 ~~~~~~~~~~l~~l~~~l~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l---~~~ 511 (731)
T TIGR02639 435 KTVSVDDREKLKNLEKNLKAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL---GVH 511 (731)
T ss_pred hhhhhHHHHHHHHHHHHHhcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh---cCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 568
Q ss_pred eEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEee
Q psy14504 501 IIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN 580 (951)
Q Consensus 501 ~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~ 580 (951)
++++||++|.+.+..++++|.++||+|+++++.+++.++..|++||||||||++++++++.|+++|++|.++|..|+.++
T Consensus 512 ~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd 591 (731)
T TIGR02639 512 LERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKAD 591 (731)
T ss_pred eEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCeEEEEecCCCchhhhhh-ccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHh
Q psy14504 581 FRNTIIVMTSNLGSDKIKEM-EKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 659 (951)
Q Consensus 581 ~~~~iiI~ttn~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~ 659 (951)
+++++||+|||.+...+... .+.......+.+...+...|+|+|++|+|.+|+|.||+.+++.+|+...+.++..++..
T Consensus 592 ~~~~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~ 671 (731)
T TIGR02639 592 FRNVILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNE 671 (731)
T ss_pred CCCCEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999998765432 11122334456778889999999999999999999999999999999999999999988
Q ss_pred cCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEe
Q psy14504 660 MNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSL 725 (951)
Q Consensus 660 ~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~ 725 (951)
.++.+.++++++++|++.+|++.||+|.|.++ +++.+ .++.+..++.|.+.++++..+
T Consensus 672 ~~~~l~i~~~a~~~La~~~~~~~~GaR~l~r~---i~~~~-----~~~l~~~~l~~~~~~~~~~~~ 729 (731)
T TIGR02639 672 KNIKLELTDDAKKYLAEKGYDEEFGARPLARV---IQEEI-----KKPLSDEILFGKLKKGGSVKV 729 (731)
T ss_pred CCCeEEeCHHHHHHHHHhCCCcccCchHHHHH---HHHHh-----HHHHHHHHHhCcCCCCCEEEE
Confidence 89999999999999999999999999999999 88888 567788888899888877654
No 8
>KOG1051|consensus
Probab=100.00 E-value=1.2e-70 Score=638.84 Aligned_cols=671 Identities=46% Similarity=0.753 Sum_probs=599.9
Q ss_pred hhhhhHHHHhhcchHHHHhcCCCCCcccc-HHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcC
Q psy14504 21 EEHIGYLKKYTIDLTEKARLGKLDPVIGR-DDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL 99 (951)
Q Consensus 21 ~~~~~~l~~~~~~l~e~~rp~~l~~lvG~-~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~ 99 (951)
....++|+.++.++++.++.+.+++++|+ ++++++++++|.+++++|.+|+|+||+|||.++.-+|+.+..+++|..+.
T Consensus 163 ~~~~~~L~~~~~dl~p~a~~gkldPvigr~deeirRvi~iL~Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~ 242 (898)
T KOG1051|consen 163 LWPLLFLENYGTDLTPRARQGKLDPVIGRHDEEIRRVIEILSRKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLK 242 (898)
T ss_pred ccchhHHHhcccccChhhhccCCCCccCCchHHHHHHHHHHhccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCcccc
Confidence 55789999999999999999999999999 99999999999999999999999999999999999999999999999999
Q ss_pred CCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEe
Q psy14504 100 SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGA 179 (951)
Q Consensus 100 ~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~a 179 (951)
+..++.++...+.+|.++.|+++.+++.+.+++...+++.||||||+|.+...+...+..++.+.|++.+.++.+.+|+|
T Consensus 243 ~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~d~~nlLkp~L~rg~l~~IGa 322 (898)
T KOG1051|consen 243 DKKLIALDFGSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAIDAANLLKPLLARGGLWCIGA 322 (898)
T ss_pred ccceEEEEhhhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHHHHHHhhHHHHhcCCeEEEec
Confidence 99999999999999999999999999999999987778899999999999988877667889999999999999999999
Q ss_pred ecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHH
Q psy14504 180 TTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDL 259 (951)
Q Consensus 180 t~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~l 259 (951)
|+..+|.++...+|+|.+||+.+.++.|+.++...||+.+..+|+.+++..+++.++..++..+.+|++.+++|+.++++
T Consensus 323 tT~e~Y~k~iekdPalErrw~l~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl 402 (898)
T KOG1051|consen 323 TTLETYRKCIEKDPALERRWQLVLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDL 402 (898)
T ss_pred ccHHHHHHHHhhCcchhhCcceeEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14504 260 IDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQ 339 (951)
Q Consensus 260 l~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (951)
+++||+..+.+....|..+..+++....+..++.+++.+.+.++.+|+. .+...........++..|..++...+.+.
T Consensus 403 ~dEa~a~~~~~~~~lP~wL~~~~~~~~~~~~e~~~L~kk~d~~~h~r~~--~~~~~~~~~~~~~l~~~~~~~~s~~~~l~ 480 (898)
T KOG1051|consen 403 EDEAAALVKSQAESLPPWLQNLERVDIKLQDEISELQKKWNQALHKRPS--LESLAPSKPTQQPLSASVDSERSVIEELK 480 (898)
T ss_pred HHHHHHHHhhhhhhCCHHHHhhhhhhhhhHHHHHHHHHhhhhhhccccc--cccccccccccccchhhhccchhHHhhhc
Confidence 9999999999999999999999999999999999999888866666665 44444445555567777877777777777
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCC
Q psy14504 340 QIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIP 419 (951)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p 419 (951)
.....+....- +.++.+..++..+.++.+..+|. +... .+ ..+..++.++..+.+.|+|+|
T Consensus 481 ~~~~~~~~~~~-~~k~~r~~d~~~~~~l~~~~~p~-~~~~----~~-------------~~~~~~~~~i~~~~s~~tgip 541 (898)
T KOG1051|consen 481 LKKNSLDRNSL-LAKAHRPNDYTRETDLRYGRIPD-ELSE----KS-------------NDNQGGESDISEVVSRWTGIP 541 (898)
T ss_pred cccCCcccchh-hhcccCCCCcchhhhccccccch-hhhh----hc-------------ccccCCccchhhhhhhhcCCc
Confidence 76777766666 88899999999999999998882 2111 11 012228889999999999999
Q ss_pred CcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC
Q psy14504 420 VSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 499 (951)
Q Consensus 420 ~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~ 499 (951)
.......+..++..|++.|.+.|+||++|+..|..++.+++.|+.+| .|...++|.||+|+|||.||++||..+|++..
T Consensus 542 ~~~~~~~e~~~l~~L~~~L~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflGpdgvGKt~lAkaLA~~~Fgse~ 620 (898)
T KOG1051|consen 542 VDRLAEAEAERLKKLEERLHERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLGPDGVGKTELAKALAEYVFGSEE 620 (898)
T ss_pred hhhhhhhHHHHHHHHHHHHHhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEECCCchhHHHHHHHHHHHHcCCcc
Confidence 99999999999999999999999999999999999999999999998 78889999999999999999999999999999
Q ss_pred ceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEe
Q psy14504 500 SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 579 (951)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~ 579 (951)
.|+++||++|.+ +++++|.++||+|+.+++.+++.++..|++||+|||||++++.+++.|+++||+|+++|+.|+.+
T Consensus 621 ~~IriDmse~~e---vskligsp~gyvG~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~GrltDs~Gr~V 697 (898)
T KOG1051|consen 621 NFIRLDMSEFQE---VSKLIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDRGRLTDSHGREV 697 (898)
T ss_pred ceEEechhhhhh---hhhccCCCcccccchhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhcCccccCCCcEe
Confidence 999999999988 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEecCCCchhhhhhcc-----c-------cHHHHHHHHHHHHH----hccChhHhhccCcEEEecCCChhhHH
Q psy14504 580 NFRNTIIVMTSNLGSDKIKEMEK-----G-------DKEIIKLAVMNEVK----IYFRPEFINRIDDIIVFRYLNRKNIL 643 (951)
Q Consensus 580 ~~~~~iiI~ttn~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~----~~f~p~l~~R~~~~i~f~~l~~~~~~ 643 (951)
+++|+|||||+|.+...+..... . ........+.+... ..|+|+|++|+|.++.|.+++++++.
T Consensus 698 d~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~ 777 (898)
T KOG1051|consen 698 DFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDAVRIYNKQFFRKEFLNRIDELDLNLPLDRDELI 777 (898)
T ss_pred eccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhhhhcccccccChHHhcccceeeeecccchhhHh
Confidence 99999999999998876555432 1 12223455666777 88999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcce
Q psy14504 644 SIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQ 723 (951)
Q Consensus 644 ~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~ 723 (951)
+|+...+.+...++...++.+.+++.+.+++...+|++.||++.|... +++.+ .......++ |++.+....
T Consensus 778 ~i~~~~~~e~~~r~~~~~~~~~v~~~~~~~v~~~~~d~~ygAr~ikr~---i~~~~-----~~~la~~~l-~ei~~~~~~ 848 (898)
T KOG1051|consen 778 EIVNKQLTEIEKRLEERELLLLVTDRVDDKVLFKGYDFDYGARPIKRS---IEERF-----ENRLAEALL-GEVEDGLTE 848 (898)
T ss_pred hhhhhHHHHHHHHhhhhHHHHHHHHHHHhhhhhcCcChHHHhhHHHHH---HHHHH-----HHHHhhhhe-eeecCCceE
Confidence 999999999999998888888999999999999999999999999988 66665 233344444 666665555
Q ss_pred Ee
Q psy14504 724 SL 725 (951)
Q Consensus 724 ~~ 725 (951)
.+
T Consensus 849 ~i 850 (898)
T KOG1051|consen 849 RI 850 (898)
T ss_pred EE
Confidence 44
No 9
>TIGR00668 apaH bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase.
Probab=100.00 E-value=2.1e-58 Score=476.28 Aligned_cols=263 Identities=35% Similarity=0.687 Sum_probs=247.1
Q ss_pred cccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHHHHHhhcccCCc
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSK 761 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~ 761 (951)
.|.+||||||+++|+++|++++|++..|.++++||+++|||.|.+|+++++++++.+.+|+||||.+++.++.+......
T Consensus 3 ~YvIGDIHGc~daL~~LL~~i~f~~~~D~l~~lGDlVdRGP~slevL~~l~~l~~~~~~VlGNHD~~lL~~~~g~~~~~~ 82 (279)
T TIGR00668 3 TYLIGDLHGCYDELQALLERVEFDPGQDTLWLTGDLVARGPGSLEVLRYVKSLGDAVRLVLGNHDLHLLAVFAGISRNKP 82 (279)
T ss_pred EEEEEcccCCHHHHHHHHHHhCcCCCCCEEEEeCCccCCCCCHHHHHHHHHhcCCCeEEEEChhHHHHHHHhcCCCccCc
Confidence 58999999999999999999999988999999999999999999999999999877889999999999998877555555
Q ss_pred cccHHHhhCCCCHHHHHHHHhcCCceEEeC--CEEEEecccCcCCCHHHHHHHhHHHHHHhhcccHHhHHHHhcCCCCCC
Q psy14504 762 LDTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSIN 839 (951)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~--~~~~vHAG~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 839 (951)
.+++..++.+++.+++++||+++|+++..+ ++++||||++|.|+..++..++++++..|++++|..|+.+||++.|..
T Consensus 83 ~d~l~~~l~a~~~~ell~wLr~lPl~i~~~~~~~~lVHAGi~P~w~l~~a~~~a~eve~~L~~~~~~~fl~~mygn~p~~ 162 (279)
T TIGR00668 83 KDRLDPLLEAPDADELLNWLRRQPLLQHDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNR 162 (279)
T ss_pred hHHHHHHHHccCHHHHHHHHHcCCcEEEeCCCCEEEEecCCCCCCcHHHHHHHHHHHHHHHcCCCHHHHHHHhhCCCCcc
Confidence 678888899999999999999999998654 599999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCCCCCCceEEEccCCCC-Cccc
Q psy14504 840 WDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL-GLIM 918 (951)
Q Consensus 840 w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~vv~GH~~~~-~~~~ 918 (951)
|++++ +|++|+|+++|+|||||||++||+++|..|+.+.+ .|+++.|||+++++.....+||||||++. |...
T Consensus 163 W~~~l-----~g~~r~r~i~n~~TRmR~c~~~g~ld~~~k~~~~~-~p~~~~PWf~~~~~~~~~~~ivfGHWaaL~g~~~ 236 (279)
T TIGR00668 163 WSPEL-----QGLARLRFIINAFTRMRFCFPNGQLDMYSKESPED-APAPLKPWFAIPGPVYEEYSIAFGHWASLEGEGT 236 (279)
T ss_pred CCCCC-----chHHHHHHHHHHHhhheeeCCCCCCcccccCCccc-CCCCCCCcccCCCccCCCCcEEEeehhhccCCCC
Confidence 99987 99999999999999999999999999999998854 48889999999999888899999999998 9999
Q ss_pred CCCeEEcccccccCCeEEEEEecCCceEEeec
Q psy14504 919 KPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 950 (951)
Q Consensus 919 ~~~~~~lDtG~v~gg~Ltal~l~~~~~~~v~~ 950 (951)
.+++++|||||||||+|||++|+++++++|++
T Consensus 237 ~~~~~~lDtGCvWGg~Lta~~l~~~~~~~~~~ 268 (279)
T TIGR00668 237 PEGIYALDTGCCWGGRLTCLRWEDKQYFTQPS 268 (279)
T ss_pred CCCeEEcccccccCcceEEEEecCCCEEEEEc
Confidence 99999999999999999999999999999986
No 10
>cd07422 MPP_ApaH Escherichia coli ApaH and related proteins, metallophosphatase domain. ApaH (also known as symmetrically cleaving Ap4A hydrolase and bis(5'nucleosyl)-tetraphosphatase) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases that hydrolyzes the nucleotide-signaling molecule diadenosine tetraphosphate (Ap(4)A) into two ADP and also hydrolyzes Ap(5)A, Gp(4)G, and other extending compounds. Null mutations in apaH result in high intracellular levels of Ap(4)A which correlate with multiple phenotypes, including a decreased expression of catabolite-repressible genes, a reduction in the expression of flagellar operons, and an increased sensitivity to UV and heat. Ap4A hydrolase is important in responding to heat shock and oxidative stress via regulating the concentration of Ap4A in bacteria. Ap4A hydrolase is also thought to play a role in siderophore production, but the mechanism by which ApaH interacts with siderophore pathwa
Probab=100.00 E-value=1.2e-53 Score=443.84 Aligned_cols=253 Identities=47% Similarity=0.867 Sum_probs=233.7
Q ss_pred ccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHHHHHhhcccCCcc
Q psy14504 683 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSKL 762 (951)
Q Consensus 683 ~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~~ 762 (951)
|.++|||||+++|+++|++++|.+..|.++++||++||||.|.+|++++++++.++.+|+||||.+++.+..+....+..
T Consensus 2 yvIGDIHG~~~~L~~LL~~i~~~~~~D~Li~lGDlVdRGp~s~evl~~l~~l~~~v~~VlGNHD~~ll~~~~g~~~~~~~ 81 (257)
T cd07422 2 YAIGDIQGCYDELQRLLEKINFDPAKDRLWLVGDLVNRGPDSLETLRFVKSLGDSAKTVLGNHDLHLLAVAAGIKKPKKK 81 (257)
T ss_pred EEEECCCCCHHHHHHHHHhcCCCCCCCEEEEecCcCCCCcCHHHHHHHHHhcCCCeEEEcCCchHHHHHHhcCccccccH
Confidence 78999999999999999999998888999999999999999999999999997788999999999999877654444556
Q ss_pred ccHHHhhCCCCHHHHHHHHhcCCceEEeC--CEEEEecccCcCCCHHHHHHHhHHHHHHhhcccHHhHHHHhcCCCCCCC
Q psy14504 763 DTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSINW 840 (951)
Q Consensus 763 ~~~~~~~~~~~~~~~~~~l~~~p~~~~~~--~~~~vHAG~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~w 840 (951)
+++.+++..++.+++++||+++|+++..+ ++++||||++|.|+..++..++++++..|++..|..++..||++.|..|
T Consensus 82 ~t~~~~l~~~~~~~~~~wLr~lPl~~~~~~~~~l~vHAGi~p~w~~~~~~~~a~eve~~l~~~~~~~~~~~my~~~p~~W 161 (257)
T cd07422 82 DTLDDILNAPDRDELLDWLRHQPLLHRDPELGILMVHAGIPPQWSIEQALKLAREVEAALRGPNYREFLKNMYGNEPDRW 161 (257)
T ss_pred hHHHHHHhccchHHHHHHHHhCCCEEEECCccEEEEccCCCCCCCHHHHHHHHHHHHHHhcCCcHHHHHHHhhCCCCccc
Confidence 67888888888999999999999999877 7999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCCCCCCceEEEccCCCCC-cccC
Q psy14504 841 DNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTLG-LIMK 919 (951)
Q Consensus 841 ~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~vv~GH~~~~~-~~~~ 919 (951)
++.+ .+.+|+|+++|+|||||||+++|+++|..|+.+. ..|+++.|||++|++.....+||||||++.+ ....
T Consensus 162 ~~~l-----~g~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~~-~~~~~~~pWf~~~~~~~~~~~i~fGHwa~l~~~~~~ 235 (257)
T cd07422 162 SDDL-----TGIDRLRYIVNAFTRMRFCTPDGRLDFSSKGAPE-DAPKGLKPWFELPNRKTDDYTIVFGHWAALGGKTRP 235 (257)
T ss_pred Cccc-----CccHHHHHHHHHhhceeeecCCCCEeecccCCcc-cCCCCCCCceeCCCccCCCCcEEEeecccccCccCC
Confidence 9886 9999999999999999999999999999999884 5588899999999998888999999999995 5555
Q ss_pred CCeEEcccccccCCeEEEEEec
Q psy14504 920 PNIICLDTGCVWGNKLTALCLE 941 (951)
Q Consensus 920 ~~~~~lDtG~v~gg~Ltal~l~ 941 (951)
+++++|||||||||+|||++|+
T Consensus 236 ~~~~~lDtGcvwG~~lta~~~~ 257 (257)
T cd07422 236 NNIIALDTGCVWGGKLTALRLE 257 (257)
T ss_pred CCeEEeccccccCCeeeEEEeC
Confidence 6799999999999999999985
No 11
>PRK00166 apaH diadenosine tetraphosphatase; Reviewed
Probab=100.00 E-value=4.7e-53 Score=444.70 Aligned_cols=263 Identities=43% Similarity=0.832 Sum_probs=243.7
Q ss_pred cccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHHHHHhhcccCCc
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSK 761 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~ 761 (951)
.|.++|||||+++|++++++++|++..|.++++||++||||.+.+|++++++++.++.+|+||||.+++.+..+......
T Consensus 3 ~~vIGDIHG~~~~l~~ll~~~~~~~~~D~li~lGDlVdrGp~s~~vl~~l~~l~~~~~~VlGNHD~~ll~~~~g~~~~~~ 82 (275)
T PRK00166 3 TYAIGDIQGCYDELQRLLEKIDFDPAKDTLWLVGDLVNRGPDSLEVLRFVKSLGDSAVTVLGNHDLHLLAVAAGIKRNKK 82 (275)
T ss_pred EEEEEccCCCHHHHHHHHHhcCCCCCCCEEEEeCCccCCCcCHHHHHHHHHhcCCCeEEEecChhHHHHHhhcCCccccc
Confidence 47899999999999999999999888899999999999999999999999998777899999999999988765444445
Q ss_pred cccHHHhhCCCCHHHHHHHHhcCCceEE--eCCEEEEecccCcCCCHHHHHHHhHHHHHHhhcccHHhHHHHhcCCCCCC
Q psy14504 762 LDTFDDILDAPDKKKLVSWLRTQPLAIY--YKKYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSIN 839 (951)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~l~~~p~~~~--~~~~~~vHAG~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 839 (951)
.+++.+++..++.+++++||+++|++++ .++++|||||++|.|+..++..++++++..|++..|..++..||++.|..
T Consensus 83 ~~~l~~~l~~~~~~~~~~~L~~lPl~~~~~~~~~l~vHAGi~p~~~~~~~~~~a~eve~~l~~~~~~~~~~~my~~~p~~ 162 (275)
T PRK00166 83 KDTLDPILEAPDRDELLDWLRHQPLLHVDEELGLVMVHAGIPPQWDLATALALAREVEAVLRSDDYRDFLANMYGNEPDR 162 (275)
T ss_pred hhHHHHHHccccHHHHHHHHHCCCcEEEECCCCEEEEccCCCCCCCHHHHHHHHHHHHHHhcCCcHHHHHHHhcCCCcCc
Confidence 5677788887888999999999999998 66899999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCCCCCCceEEEccCCCC-Cccc
Q psy14504 840 WDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL-GLIM 918 (951)
Q Consensus 840 w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~vv~GH~~~~-~~~~ 918 (951)
|+..+ .+.+|.|+++|+|||||||+++|+++|..|+.+. ..++++.|||++|++......|||||||+. |...
T Consensus 163 W~~~l-----~~~~r~r~~~n~~trmR~~~~~g~l~~~~k~~~~-~~~~~~~pWf~~~~~~~~~~~i~fGHwa~l~G~~~ 236 (275)
T PRK00166 163 WSPDL-----TGLERLRYIINAFTRMRFCTPDGRLDFKCKGPPD-EAPAGLKPWFEVPGRKTRDYTIVFGHWAALEGLTT 236 (275)
T ss_pred cCccc-----CchHHHHHHHHHHhhhhcccCCCceeecccCCcc-cCCcCCCCCccCcCccCCCCeEEEecCcccCCccC
Confidence 99886 8999999999999999999999999999999774 557899999999999888889999999999 9999
Q ss_pred CCCeEEcccccccCCeEEEEEecCCceEEeec
Q psy14504 919 KPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 950 (951)
Q Consensus 919 ~~~~~~lDtG~v~gg~Ltal~l~~~~~~~v~~ 950 (951)
.+|+++|||||||||+|||+++++++++||++
T Consensus 237 ~~~~~~LDtGcvwgg~Lta~~l~~~~~~~~~~ 268 (275)
T PRK00166 237 PPNIIALDTGCVWGGKLTALRLEDKQIFQVPC 268 (275)
T ss_pred CCCeEEeecccccCCeEEEEEeCCCcEEEEeC
Confidence 99999999999999999999999999999976
No 12
>KOG0733|consensus
Probab=100.00 E-value=3.1e-48 Score=419.62 Aligned_cols=453 Identities=19% Similarity=0.263 Sum_probs=308.7
Q ss_pred CCCCccccHHHHHHHHHHHH------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
+|.++=|.+..+..+...+. -.+++++||+||||||||+||+++|.++ +.+++.+...
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel----------~vPf~~isAp 257 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL----------GVPFLSISAP 257 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc----------CCceEeecch
Confidence 48899999988877776442 3567899999999999999999999999 9999999999
Q ss_pred hhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCc---hhHHhhhhhhcc--------CCcEEEEE
Q psy14504 110 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPELS--------RGELHCIG 178 (951)
Q Consensus 110 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~le--------~~~i~vI~ 178 (951)
.+++| +.|+++++++.+|++|. ...|||+||||||.+.+.+...+. ..+...|+..|. ...|+||+
T Consensus 258 eivSG--vSGESEkkiRelF~~A~-~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIg 334 (802)
T KOG0733|consen 258 EIVSG--VSGESEKKIRELFDQAK-SNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIG 334 (802)
T ss_pred hhhcc--cCcccHHHHHHHHHHHh-ccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEe
Confidence 99854 66999999999999998 556999999999999998865331 224556666663 25699999
Q ss_pred eecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchh
Q psy14504 179 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 255 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 255 (951)
|||+++ .+||+|+| ||+. |.+..|+..+|.+||+.+++.+.....+ ....++.++.+|+ +.+
T Consensus 335 ATnRPD-----slDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g~~-----d~~qlA~lTPGfV-----GAD 399 (802)
T KOG0733|consen 335 ATNRPD-----SLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSGDF-----DFKQLAKLTPGFV-----GAD 399 (802)
T ss_pred cCCCCc-----ccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCCCc-----CHHHHHhcCCCcc-----chh
Confidence 999999 99999999 9997 9999999999999999999865443322 3467889988887 788
Q ss_pred HHHHHHHHHHHhHHhhc---CCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH---------HHHHHHHH
Q psy14504 256 AIDLIDEAAAKIKIEID---SKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEIN---------KLEIKYAN 323 (951)
Q Consensus 256 a~~ll~~a~~~~~~~~~---~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~---------~~~~~~~~ 323 (951)
...|+.+|+..+..+.- +.|... .....+..+ .+.+.-++-+. .+.+-.
T Consensus 400 L~AL~~~Aa~vAikR~ld~~~~p~~~----------------~~~~ed~~~-~~~~~d~S~i~~~~~~~~~~~ld~v~-- 460 (802)
T KOG0733|consen 400 LMALCREAAFVAIKRILDQSSSPLTK----------------VPISEDSSN-KDAEEDQSSIKITSNAERPLELDRVV-- 460 (802)
T ss_pred HHHHHHHHHHHHHHHHhhcccCcccc----------------CCccccccC-CCccchhhhhhcCCcccccccHHHHH--
Confidence 88888888765543311 000000 000000000 00000000000 000000
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCcccccccccccc
Q psy14504 324 LEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKV 403 (951)
Q Consensus 324 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v 403 (951)
.+.|....+- .. .+..+.-.-.+...+..+...+++.+. +.-..-+.|
T Consensus 461 -~~~i~~~~d~------------------------~S-~E~~~~L~i~~eDF~~Al~~iQPSakR------EGF~tVPdV 508 (802)
T KOG0733|consen 461 -QDAILNNPDP------------------------LS-KELLEGLSIKFEDFEEALSKIQPSAKR------EGFATVPDV 508 (802)
T ss_pred -HHHHHhCCCC------------------------cC-hHHhccceecHHHHHHHHHhcCcchhc------ccceecCCC
Confidence 0000000000 00 000000001122223333333333222 222223344
Q ss_pred ChhHHHHHHHHhhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcH
Q psy14504 404 GSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGK 483 (951)
Q Consensus 404 ~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGK 483 (951)
+|+| .+.+.+++..|+..| +..+...-...+.|+..|. .+||+|||||||
T Consensus 509 tW~d--------------------IGaL~~vR~eL~~aI------~~PiK~pd~~k~lGi~~Ps----GvLL~GPPGCGK 558 (802)
T KOG0733|consen 509 TWDD--------------------IGALEEVRLELNMAI------LAPIKRPDLFKALGIDAPS----GVLLCGPPGCGK 558 (802)
T ss_pred Chhh--------------------cccHHHHHHHHHHHH------hhhccCHHHHHHhCCCCCC----ceEEeCCCCccH
Confidence 4444 455566666665544 3333333344456665554 499999999999
Q ss_pred HHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH-----
Q psy14504 484 TELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS----- 556 (951)
Q Consensus 484 T~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~----- 556 (951)
|.||+|+|++. +.+|+.+.++++.++ |+|+++. +.+|..++.+.+|||||||+|.+.|
T Consensus 559 TLlAKAVANEa---g~NFisVKGPELlNk------------YVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~ 623 (802)
T KOG0733|consen 559 TLLAKAVANEA---GANFISVKGPELLNK------------YVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDE 623 (802)
T ss_pred HHHHHHHhhhc---cCceEeecCHHHHHH------------HhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCC
Confidence 99999999988 899999999999987 9999886 7788888999999999999998764
Q ss_pred ------HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hcc
Q psy14504 557 ------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRI 628 (951)
Q Consensus 557 ------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~ 628 (951)
.+.|+||..||... .-.++.+|.+||.+.- +.|+++ +||
T Consensus 624 ~s~~s~RvvNqLLtElDGl~---------~R~gV~viaATNRPDi------------------------IDpAiLRPGRl 670 (802)
T KOG0733|consen 624 GSSVSSRVVNQLLTELDGLE---------ERRGVYVIAATNRPDI------------------------IDPAILRPGRL 670 (802)
T ss_pred CchhHHHHHHHHHHHhcccc---------cccceEEEeecCCCcc------------------------cchhhcCCCcc
Confidence 68999999999632 3456788889997543 234444 799
Q ss_pred CcEEEecCCChhhHHHHHHHHHH
Q psy14504 629 DDIIVFRYLNRKNILSIANIQLN 651 (951)
Q Consensus 629 ~~~i~f~~l~~~~~~~i~~~~l~ 651 (951)
|.+..+..++.+|...|++...+
T Consensus 671 Dk~LyV~lPn~~eR~~ILK~~tk 693 (802)
T KOG0733|consen 671 DKLLYVGLPNAEERVAILKTITK 693 (802)
T ss_pred CceeeecCCCHHHHHHHHHHHhc
Confidence 99999999999999999665543
No 13
>KOG0730|consensus
Probab=100.00 E-value=5.2e-42 Score=378.43 Aligned_cols=407 Identities=23% Similarity=0.333 Sum_probs=304.0
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEE
Q psy14504 62 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 141 (951)
Q Consensus 62 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL 141 (951)
-+.+.++|+|||||||||.+++++|++. ++.++.++...+. .++.|+++..++..|+++.....|+++
T Consensus 215 ~~~prg~Ll~gppg~Gkt~l~~aVa~e~----------~a~~~~i~~peli--~k~~gEte~~LR~~f~~a~k~~~psii 282 (693)
T KOG0730|consen 215 IKPPRGLLLYGPPGTGKTFLVRAVANEY----------GAFLFLINGPELI--SKFPGETESNLRKAFAEALKFQVPSII 282 (693)
T ss_pred CCCCCCccccCCCCCChHHHHHHHHHHh----------CceeEecccHHHH--HhcccchHHHHHHHHHHHhccCCCeeE
Confidence 4667899999999999999999999998 8899999999888 678999999999999999966669999
Q ss_pred EEecccccccCCCCCCc--hhHHhhhhhhcc----CCcEEEEEeecchHHHHhhhcCHHHhh-cceE-EEeeCCCHHHHH
Q psy14504 142 FIDELHTMIGTGKVEGS--IDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER-RFQK-ILVEEPDIEETI 213 (951)
Q Consensus 142 ~iDEid~l~~~~~~~~~--~~~~~~L~~~le----~~~i~vI~at~~~~~~~~~~~~~~l~~-Rf~~-i~~~~p~~~er~ 213 (951)
||||+|.+.+.+..... ..+...|+.+++ .+++++|++||++. .+|++++| ||+. +.+..|+..+|.
T Consensus 283 ~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~-----sld~alRRgRfd~ev~IgiP~~~~Rl 357 (693)
T KOG0730|consen 283 FIDELDALCPKREGADDVESRVVSQLLTLLDGLKPDAKVIVLAATNRPD-----SLDPALRRGRFDREVEIGIPGSDGRL 357 (693)
T ss_pred eHHhHhhhCCcccccchHHHHHHHHHHHHHhhCcCcCcEEEEEecCCcc-----ccChhhhcCCCcceeeecCCCchhHH
Confidence 99999999987654332 334555666663 57899999999999 99999999 9997 999999999999
Q ss_pred HHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHH
Q psy14504 214 SILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHE 293 (951)
Q Consensus 214 ~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~ 293 (951)
+|++.+.+.++. . ++..+..++..+.+|+ +.++..++.+|......+ .+
T Consensus 358 dIl~~l~k~~~~----~-~~~~l~~iA~~thGyv-----GaDL~~l~~ea~~~~~r~------~~--------------- 406 (693)
T KOG0730|consen 358 DILRVLTKKMNL----L-SDVDLEDIAVSTHGYV-----GADLAALCREASLQATRR------TL--------------- 406 (693)
T ss_pred HHHHHHHHhcCC----c-chhhHHHHHHHccchh-----HHHHHHHHHHHHHHHhhh------hH---------------
Confidence 999999886532 2 5677888999998887 677777777665333211 00
Q ss_pred HHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCchHhhhhhhhhchH
Q psy14504 294 AIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELN 373 (951)
Q Consensus 294 ~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 373 (951)
+ +|..
T Consensus 407 ----------------------------------------------------~-------------~~~~---------- 411 (693)
T KOG0730|consen 407 ----------------------------------------------------E-------------IFQE---------- 411 (693)
T ss_pred ----------------------------------------------------H-------------HHHH----------
Confidence 0 0000
Q ss_pred HHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHH
Q psy14504 374 KLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVS 453 (951)
Q Consensus 374 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~ 453 (951)
+ ...+.++.++..+ +++.+..|++++++.+++..|++.|. ..+.
T Consensus 412 -----------A--------------~~~i~psa~Re~~-----ve~p~v~W~dIGGlE~lK~elq~~V~------~p~~ 455 (693)
T KOG0730|consen 412 -----------A--------------LMGIRPSALREIL-----VEMPNVSWDDIGGLEELKRELQQAVE------WPLK 455 (693)
T ss_pred -----------H--------------HhcCCchhhhhee-----ccCCCCChhhccCHHHHHHHHHHHHh------hhhh
Confidence 0 0112222222222 34445555555666666666665552 2333
Q ss_pred HHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCcccccc--
Q psy14504 454 NAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG-- 531 (951)
Q Consensus 454 ~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~-- 531 (951)
..-...+.|+..|+ .+|||||||||||++||++|.+. +.+|+++.++++.++ |+|+++.
T Consensus 456 ~pe~F~r~Gi~ppk----GVLlyGPPGC~KT~lAkalAne~---~~nFlsvkgpEL~sk------------~vGeSEr~i 516 (693)
T KOG0730|consen 456 HPEKFARFGISPPK----GVLLYGPPGCGKTLLAKALANEA---GMNFLSVKGPELFSK------------YVGESERAI 516 (693)
T ss_pred chHHHHHhcCCCCc----eEEEECCCCcchHHHHHHHhhhh---cCCeeeccCHHHHHH------------hcCchHHHH
Confidence 33344566766555 49999999999999999999998 889999999999876 8888876
Q ss_pred chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhh
Q psy14504 532 GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 600 (951)
Q Consensus 532 ~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 600 (951)
+.+|..++.+++||+||||||.+. ..++++||+.||... ..++++||++||.+..
T Consensus 517 r~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e---------~~k~V~ViAATNRpd~----- 582 (693)
T KOG0730|consen 517 REVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLE---------ALKNVLVIAATNRPDM----- 582 (693)
T ss_pred HHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHccccc---------ccCcEEEEeccCChhh-----
Confidence 778888999999999999999764 468999999999522 3368899999997653
Q ss_pred ccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchH-HHHHHHHh
Q psy14504 601 EKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA-ALKKISNI 677 (951)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~-~~~~L~~~ 677 (951)
+++++++ |||.+|.+++++.+...+|++..+++ +.++++ -++.|++
T Consensus 583 -------------------ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kk-----------mp~~~~vdl~~La~- 631 (693)
T KOG0730|consen 583 -------------------IDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKK-----------MPFSEDVDLEELAQ- 631 (693)
T ss_pred -------------------cCHHHcCCcccceeEeecCccHHHHHHHHHHHHhc-----------CCCCccccHHHHHH-
Confidence 4667775 99999999999999999997666554 334444 3566666
Q ss_pred cccccccccccccch
Q psy14504 678 GFDLIYGARDVHGCK 692 (951)
Q Consensus 678 ~~~~~~g~~dlhg~~ 692 (951)
....|.-.||.+.+
T Consensus 632 -~T~g~SGAel~~lC 645 (693)
T KOG0730|consen 632 -ATEGYSGAEIVAVC 645 (693)
T ss_pred -HhccCChHHHHHHH
Confidence 22234445665553
No 14
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=1.2e-34 Score=352.07 Aligned_cols=445 Identities=22% Similarity=0.341 Sum_probs=292.3
Q ss_pred hcCCCCCccccHHHHHHHHHHHHc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~~-------------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
..-+|+++.|.+..++.+...+.. ..+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 173 ~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~----------~~~~i~ 242 (733)
T TIGR01243 173 PKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEA----------GAYFIS 242 (733)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHh----------CCeEEE
Confidence 345788999999988888765531 445789999999999999999999998 778898
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCc---hhHHhhhhhhc----cCCcEEEEE
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPEL----SRGELHCIG 178 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l----e~~~i~vI~ 178 (951)
++...+. +++.|+.+..++.+|..+.. ..|+||||||+|.+.+.++...+ ....+.|..++ +++.+++|+
T Consensus 243 i~~~~i~--~~~~g~~~~~l~~lf~~a~~-~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI~ 319 (733)
T TIGR01243 243 INGPEIM--SKYYGESEERLREIFKEAEE-NAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVIG 319 (733)
T ss_pred EecHHHh--cccccHHHHHHHHHHHHHHh-cCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEEe
Confidence 9887776 56789999999999999874 45889999999999876543221 23455566666 357899999
Q ss_pred eecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchh
Q psy14504 179 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 255 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 255 (951)
+||.++ .+|+++++ ||+. +.++.|+.++|.+||+......... .+..+..++..+.+|. +.+
T Consensus 320 atn~~~-----~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-----~d~~l~~la~~t~G~~-----gad 384 (733)
T TIGR01243 320 ATNRPD-----ALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-----EDVDLDKLAEVTHGFV-----GAD 384 (733)
T ss_pred ecCChh-----hcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-----cccCHHHHHHhCCCCC-----HHH
Confidence 999988 78999998 9986 9999999999999999665532211 2334677888887776 555
Q ss_pred HHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy14504 256 AIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLI 335 (951)
Q Consensus 256 a~~ll~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (951)
...++..++..+..+.... .......+
T Consensus 385 l~~l~~~a~~~al~r~~~~-----------------------~~~~~~~~------------------------------ 411 (733)
T TIGR01243 385 LAALAKEAAMAALRRFIRE-----------------------GKINFEAE------------------------------ 411 (733)
T ss_pred HHHHHHHHHHHHHHHHhhc-----------------------cccccccc------------------------------
Confidence 6666555543322110000 00000000
Q ss_pred HhHHHHHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHh
Q psy14504 336 KDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRT 415 (951)
Q Consensus 336 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~ 415 (951)
. ++ ........++..++...+...
T Consensus 412 --------~---------------------------i~---------------------~~~~~~~~v~~~df~~Al~~v 435 (733)
T TIGR01243 412 --------E---------------------------IP---------------------AEVLKELKVTMKDFMEALKMV 435 (733)
T ss_pred --------c---------------------------cc---------------------chhcccccccHHHHHHHHhhc
Confidence 0 00 000000011112221111111
Q ss_pred hCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHH
Q psy14504 416 TGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELC 487 (951)
Q Consensus 416 ~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~~Ll~GppGtGKT~lA 487 (951)
.... +. .........-...+.|++.+++.+...+... ..+.. +...+||+||||||||++|
T Consensus 436 ~ps~---~~----~~~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~----~~~giLL~GppGtGKT~la 504 (733)
T TIGR01243 436 EPSA---IR----EVLVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIR----PPKGVLLFGPPGTGKTLLA 504 (733)
T ss_pred cccc---cc----hhhccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCC----CCceEEEECCCCCCHHHHH
Confidence 0000 00 0000000112245678888888887776431 11222 2236999999999999999
Q ss_pred HHHHHHhccCCCceEEeccccccchhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC----------
Q psy14504 488 KTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN---------- 555 (951)
Q Consensus 488 ~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~---------- 555 (951)
+++|..+ +.+|+.++++++... |+|+++. +.++..++...+|||||||||.+.
T Consensus 505 kalA~e~---~~~fi~v~~~~l~~~------------~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~ 569 (733)
T TIGR01243 505 KAVATES---GANFIAVRGPEILSK------------WVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTS 569 (733)
T ss_pred HHHHHhc---CCCEEEEehHHHhhc------------ccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCcc
Confidence 9999998 678999999887653 7776654 556677788889999999999874
Q ss_pred --HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcE
Q psy14504 556 --SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDI 631 (951)
Q Consensus 556 --~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~ 631 (951)
..+.+.|+..|+.- ....++++|+|||.+. .++|.++ +|||.+
T Consensus 570 ~~~~~~~~lL~~ldg~---------~~~~~v~vI~aTn~~~------------------------~ld~allRpgRfd~~ 616 (733)
T TIGR01243 570 VTDRIVNQLLTEMDGI---------QELSNVVVIAATNRPD------------------------ILDPALLRPGRFDRL 616 (733)
T ss_pred HHHHHHHHHHHHhhcc---------cCCCCEEEEEeCCChh------------------------hCCHhhcCCCccceE
Confidence 24678888888741 1345788999999744 2466777 599999
Q ss_pred EEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 632 IVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 632 i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
+.|++++.++..+|++..+.+ .. +. ++.-++.|+.. ...|.-.||...
T Consensus 617 i~v~~Pd~~~R~~i~~~~~~~-------~~--~~-~~~~l~~la~~--t~g~sgadi~~~ 664 (733)
T TIGR01243 617 ILVPPPDEEARKEIFKIHTRS-------MP--LA-EDVDLEELAEM--TEGYTGADIEAV 664 (733)
T ss_pred EEeCCcCHHHHHHHHHHHhcC-------CC--CC-ccCCHHHHHHH--cCCCCHHHHHHH
Confidence 999999999999996544322 11 11 11124556652 234556677665
No 15
>KOG0736|consensus
Probab=100.00 E-value=8.3e-34 Score=315.69 Aligned_cols=437 Identities=18% Similarity=0.250 Sum_probs=288.3
Q ss_pred CccccHHHHHHHHHHHHcCC---------CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14504 45 PVIGRDDEIRRAIQVLQRRS---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 115 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~~~---------~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 115 (951)
..-+++..+..+.+++..+. ...+||+|+||||||++++++|+++ +.+++++++..+.+.
T Consensus 402 ~~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l----------g~h~~evdc~el~~~- 470 (953)
T KOG0736|consen 402 SPPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL----------GLHLLEVDCYELVAE- 470 (953)
T ss_pred CCccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh----------CCceEeccHHHHhhc-
Confidence 34456666667777665322 2347999999999999999999999 999999999999854
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc-------CCcEEEEEeecchHHHHh
Q psy14504 116 KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-------RGELHCIGATTLNEYRQY 188 (951)
Q Consensus 116 ~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le-------~~~i~vI~at~~~~~~~~ 188 (951)
..+.++.++..+|..++ ...|+|||+-++|.+.-+.+.......+..+...++ .+.+++|++|+..+
T Consensus 471 -s~~~~etkl~~~f~~a~-~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~---- 544 (953)
T KOG0736|consen 471 -SASHTETKLQAIFSRAR-RCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIE---- 544 (953)
T ss_pred -ccchhHHHHHHHHHHHh-hcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEeccccc----
Confidence 45778889999999998 456999999999998754433323334444554443 45789999999988
Q ss_pred hhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCCh-HHHHHHHHHhhhhcccCCCchhHHHHHHHHHHH
Q psy14504 189 IEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITD-PAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 189 ~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~-~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~ 266 (951)
.+++.+++.|.. |.++.|+.+||.+||+.+..... +++ ..++.++..+.+|. .++...++..+...
T Consensus 545 -~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~------~n~~v~~k~~a~~t~gfs-----~~~L~~l~~~~s~~ 612 (953)
T KOG0736|consen 545 -DLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP------LNQDVNLKQLARKTSGFS-----FGDLEALVAHSSLA 612 (953)
T ss_pred -cCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc------cchHHHHHHHHHhcCCCC-----HHHHHHHhcCchHH
Confidence 899999998875 99999999999999999887533 332 33455666666654 33333333222000
Q ss_pred hHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q psy14504 267 IKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIE 346 (951)
Q Consensus 267 ~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 346 (951)
..
T Consensus 613 ~~------------------------------------------------------------------------------ 614 (953)
T KOG0736|consen 613 AK------------------------------------------------------------------------------ 614 (953)
T ss_pred HH------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHH-------HHhhCCC
Q psy14504 347 KVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIV-------SRTTGIP 419 (951)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~-------~~~~~~p 419 (951)
.++++..-.|++.+. .+. ........++.+|+...+ +...|.|
T Consensus 615 ---~~i~~~~l~g~~~~~------------------~~~---------~~~~~~~~l~~edf~kals~~~~~fs~aiGAP 664 (953)
T KOG0736|consen 615 ---TRIKNKGLAGGLQEE------------------DEG---------ELCAAGFLLTEEDFDKALSRLQKEFSDAIGAP 664 (953)
T ss_pred ---HHHHhhcccccchhc------------------ccc---------ccccccceecHHHHHHHHHHHHHhhhhhcCCC
Confidence 000000000000000 000 000111234444444444 3445665
Q ss_pred -CcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhh---cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhc
Q psy14504 420 -VSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSR---SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIF 495 (951)
Q Consensus 420 -~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~---~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~ 495 (951)
+++..|++. -|.++++..|...+...- .-+...-++...+|||||||||||.+|||+|.++
T Consensus 665 KIPnV~WdDV--------------GGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc- 729 (953)
T KOG0736|consen 665 KIPNVSWDDV--------------GGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC- 729 (953)
T ss_pred CCCccchhcc--------------cCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc-
Confidence 455555554 466666666666664310 0011112334469999999999999999999999
Q ss_pred cCCCceEEeccccccchhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH-------------HHHH
Q psy14504 496 NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-------------DVFN 560 (951)
Q Consensus 496 ~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~-------------~~~~ 560 (951)
...|.++.++|+.+. |+|+++. +.+++.++.+.+|||||||+|+++| ++..
T Consensus 730 --sL~FlSVKGPELLNM------------YVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVS 795 (953)
T KOG0736|consen 730 --SLNFLSVKGPELLNM------------YVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVS 795 (953)
T ss_pred --eeeEEeecCHHHHHH------------HhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHH
Confidence 789999999999987 9999887 7889999999999999999999986 6899
Q ss_pred HHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCC
Q psy14504 561 ILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLN 638 (951)
Q Consensus 561 ~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~ 638 (951)
+||..||. . .++ +...++||.+||.+.- ++|+|+ +|||..+.+.+-.
T Consensus 796 QLLAELDg-l-s~~-----~s~~VFViGATNRPDL------------------------LDpALLRPGRFDKLvyvG~~~ 844 (953)
T KOG0736|consen 796 QLLAELDG-L-SDS-----SSQDVFVIGATNRPDL------------------------LDPALLRPGRFDKLVYVGPNE 844 (953)
T ss_pred HHHHHhhc-c-cCC-----CCCceEEEecCCCccc------------------------cChhhcCCCccceeEEecCCc
Confidence 99999984 1 111 3456778888997542 345555 7999988888875
Q ss_pred h-hhHHHHHHHHHHHHHHHHHhcCCccccchHH-HHHHHHhccccccccccccc
Q psy14504 639 R-KNILSIANIQLNILKNKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHG 690 (951)
Q Consensus 639 ~-~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~-~~~L~~~~~~~~~g~~dlhg 690 (951)
. +...+|++..-++ +.+++++ +..+++. .+++|.-.|+..
T Consensus 845 d~esk~~vL~AlTrk-----------FkLdedVdL~eiAk~-cp~~~TGADlYs 886 (953)
T KOG0736|consen 845 DAESKLRVLEALTRK-----------FKLDEDVDLVEIAKK-CPPNMTGADLYS 886 (953)
T ss_pred cHHHHHHHHHHHHHH-----------ccCCCCcCHHHHHhh-CCcCCchhHHHH
Confidence 5 4455564443333 2333333 3345553 455555556554
No 16
>KOG0735|consensus
Probab=100.00 E-value=3.6e-33 Score=307.42 Aligned_cols=386 Identities=21% Similarity=0.273 Sum_probs=260.0
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEE
Q psy14504 63 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 142 (951)
Q Consensus 63 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~ 142 (951)
....+|||+||+|+|||.||+++++++.... .+++..++|+.+. .+....+.+.+..+|.++. ..+|+|++
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~------~~hv~~v~Cs~l~--~~~~e~iQk~l~~vfse~~-~~~PSiIv 499 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDL------IAHVEIVSCSTLD--GSSLEKIQKFLNNVFSEAL-WYAPSIIV 499 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhcccc------ceEEEEEechhcc--chhHHHHHHHHHHHHHHHH-hhCCcEEE
Confidence 4567999999999999999999999985332 5678888888776 3335667777888888887 55699999
Q ss_pred EecccccccCCCCCCchh--HHhhh--------hhhccC-CcEEEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCC
Q psy14504 143 IDELHTMIGTGKVEGSID--AGNML--------KPELSR-GELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPD 208 (951)
Q Consensus 143 iDEid~l~~~~~~~~~~~--~~~~L--------~~~le~-~~i~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~ 208 (951)
+|++|.|.+..+.+++++ ..+.| +.++++ ..+.+|++.+... .++|.|.+ +|+. +.++.|.
T Consensus 500 LDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~q-----tl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 500 LDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQ-----TLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred EcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhh-----hcChhhcCccceEEEEecCCcc
Confidence 999999998544444332 22222 233344 4568899888776 78888877 8886 9999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhHHhhc-CCchHHHHHHHHHHH
Q psy14504 209 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEID-SKPEIMDKLERRLIQ 287 (951)
Q Consensus 209 ~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~~-~~~~~l~~l~~~~~~ 287 (951)
..+|..||+.++.+. ...+....++.++..++||. +.+..-+++.|...+..... ..+..+.
T Consensus 575 ~~~R~~IL~~~~s~~----~~~~~~~dLd~ls~~TEGy~-----~~DL~ifVeRai~~a~leris~~~kllt-------- 637 (952)
T KOG0735|consen 575 VTRRKEILTTIFSKN----LSDITMDDLDFLSVKTEGYL-----ATDLVIFVERAIHEAFLERISNGPKLLT-------- 637 (952)
T ss_pred hhHHHHHHHHHHHhh----hhhhhhHHHHHHHHhcCCcc-----chhHHHHHHHHHHHHHHHHhccCcccch--------
Confidence 999999999988753 24455667777888888876 67777777776544331100 0000000
Q ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCchHhhhhh
Q psy14504 288 LKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKL 367 (951)
Q Consensus 288 ~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 367 (951)
.
T Consensus 638 ----------------------------------------------------------------------k--------- 638 (952)
T KOG0735|consen 638 ----------------------------------------------------------------------K--------- 638 (952)
T ss_pred ----------------------------------------------------------------------H---------
Confidence 0
Q ss_pred hhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCCcccchHHHHHHHHHHHHhhccCCChHH
Q psy14504 368 KYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDE 447 (951)
Q Consensus 368 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~ 447 (951)
..+++.+..+.+..|. +..+. +.+|+ .+ +.+-|..+
T Consensus 639 -----e~f~ksL~~F~P~aLR------~ik~~--------------k~tgi-----~w--------------~digg~~~ 674 (952)
T KOG0735|consen 639 -----ELFEKSLKDFVPLALR------GIKLV--------------KSTGI-----RW--------------EDIGGLFE 674 (952)
T ss_pred -----HHHHHHHHhcChHHhh------hcccc--------------ccCCC-----Cc--------------eecccHHH
Confidence 0011112222222111 01111 11222 12 23344555
Q ss_pred HHHHHHHHHHhhhc----CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCC
Q psy14504 448 AISAVSNAIRRSRS----GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP 523 (951)
Q Consensus 448 ~~~~l~~~~~~~~~----~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 523 (951)
+++.+.+.+..... ....|-+-...+|||||||||||.+|.++|... ...|+++.++++.++
T Consensus 675 ~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~---~~~fisvKGPElL~K----------- 740 (952)
T KOG0735|consen 675 AKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS---NLRFISVKGPELLSK----------- 740 (952)
T ss_pred HHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC---CeeEEEecCHHHHHH-----------
Confidence 55555555432210 001122222369999999999999999999988 789999999999886
Q ss_pred CCcccccc--chhHHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHhhcceeecCCCeEeecCCeEEEEec
Q psy14504 524 GYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 590 (951)
Q Consensus 524 ~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 590 (951)
|+|.++. +.++..++.+.+|||||||+|+++| ++.|+||+.||.-. ....+.|+++|
T Consensus 741 -yIGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~E---------gl~GV~i~aaT 810 (952)
T KOG0735|consen 741 -YIGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAE---------GLDGVYILAAT 810 (952)
T ss_pred -HhcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhcccc---------ccceEEEEEec
Confidence 9998887 7788889999999999999999875 78999999999521 13345555555
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
..+ +. +.|+|+ +|+|..|..+.+++.+..+|++..-
T Consensus 811 sRp-dl-----------------------iDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls 848 (952)
T KOG0735|consen 811 SRP-DL-----------------------IDPALLRPGRLDKLVYCPLPDEPERLEILQVLS 848 (952)
T ss_pred CCc-cc-----------------------cCHhhcCCCccceeeeCCCCCcHHHHHHHHHHh
Confidence 543 22 345555 7999999999999999999965433
No 17
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.8e-31 Score=294.39 Aligned_cols=412 Identities=22% Similarity=0.340 Sum_probs=320.5
Q ss_pred HHHHHHHHHHHHhhhh--hcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhHHhhcCC------chHHHHH
Q psy14504 210 EETISILRGLQKKYEV--HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEIDSK------PEIMDKL 281 (951)
Q Consensus 210 ~er~~il~~~~~~~~~--~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~~~~------~~~l~~l 281 (951)
.+...+.+.+...++. ..+-.++.+.+..+... .+.-.+.+.+++......... .+..+++
T Consensus 126 ~~~~al~~~i~~~~~~~~~l~~~~~~e~l~~~~~i-----------~~~~klad~iaa~l~~~~~~kQ~iLe~~~v~~Rl 194 (782)
T COG0466 126 REIEALVRSILSEFEEYAKLNKKIPPEELQSLNSI-----------DDPGKLADTIAAHLPLKLEEKQEILETLDVKERL 194 (782)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHhcc-----------cchHHHHHHHHHhCCCCHHHHHHHHHhCCHHHHH
Confidence 3344555555544332 11222666666655422 222355666665544332222 2334789
Q ss_pred HHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCch
Q psy14504 282 ERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDW 361 (951)
Q Consensus 282 ~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 361 (951)
++.+..+..|++.++.++.+.++ ++++|++.|++|+..+|...+++++....... .++++++++++... ..
T Consensus 195 ek~l~~l~~ei~~~~~ek~I~~k-----Vk~~meK~QREyyL~EQlKaIqkELG~~~d~~-~e~~~~~~kie~~~---~p 265 (782)
T COG0466 195 EKLLDLLEKEIDLLQLEKRIRKK-----VKEQMEKSQREYYLREQLKAIQKELGEDDDDK-DEVEELREKIEKLK---LP 265 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHhCCCccch-hHHHHHHHHHhhcC---CC
Confidence 99999999999999988776665 99999999999999999999999998765333 78888999888655 67
Q ss_pred HhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCCcccchHHHHHHHHHHHHhhcc
Q psy14504 362 QTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKR 441 (951)
Q Consensus 362 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~ 441 (951)
+++.+....++.+|+. ++++|++++++++ ++.+++.+||...+.. ...+...+..|+++
T Consensus 266 ~evk~k~~~El~kL~~-----------m~~~SaE~~ViRn---------YlDwll~lPW~~~sk~-~~Dl~~a~~iLd~d 324 (782)
T COG0466 266 KEAKEKAEKELKKLET-----------MSPMSAEATVIRN---------YLDWLLDLPWGKRSKD-KLDLKKAEKILDKD 324 (782)
T ss_pred HHHHHHHHHHHHHHhc-----------CCCCCchHHHHHH---------HHHHHHhCCCccccch-hhhHHHHHHHhccc
Confidence 7888888888888886 7788888888777 7888999999877664 45688999999999
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCC
Q psy14504 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 521 (951)
Q Consensus 442 v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 521 (951)
-.|.+.+++++.+.+...... ..-++| .++|+||||+|||+|++.||+.+ +..|+++.+..+.+ .+++-|+
T Consensus 325 HYGLekVKeRIlEyLAV~~l~-~~~kGp--ILcLVGPPGVGKTSLgkSIA~al---~RkfvR~sLGGvrD---EAEIRGH 395 (782)
T COG0466 325 HYGLEKVKERILEYLAVQKLT-KKLKGP--ILCLVGPPGVGKTSLGKSIAKAL---GRKFVRISLGGVRD---EAEIRGH 395 (782)
T ss_pred ccCchhHHHHHHHHHHHHHHh-ccCCCc--EEEEECCCCCCchhHHHHHHHHh---CCCEEEEecCcccc---HHHhccc
Confidence 999999999999988654432 222334 48999999999999999999999 78999999988766 4677799
Q ss_pred CCCCccccccchhHHHHH-hCCCeEEEEccccccCHHH----HHHHHHHhh---cceeecCC-CeEeecCCeEEEEecCC
Q psy14504 522 PPGYIGYEEGGYLTEIVR-RKPYSLILLDEIEKANSDV----FNILLQILD---DGRLTDNR-GRTINFRNTIIVMTSNL 592 (951)
Q Consensus 522 ~~~~~g~~~~~~l~~~~~-~~~~~vl~iDEid~~~~~~----~~~Ll~~le---~g~~~~~~-g~~~~~~~~iiI~ttn~ 592 (951)
...|+|...++.+....+ ...+.|++|||||+++.+. .++||++|| +..|.|.+ ....|.++++||+|+|.
T Consensus 396 RRTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANs 475 (782)
T COG0466 396 RRTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANS 475 (782)
T ss_pred cccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhccccCccchhheEEEeecCc
Confidence 999999999988887764 3457899999999998754 589999998 56677765 56778999999999996
Q ss_pred CchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCC---ccccchH
Q psy14504 593 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNM---DLKISKA 669 (951)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~---~l~~~~~ 669 (951)
- ..++.+|++|+ ++|.+..|+.++..+|++.+| +-+.++..|+ .+.++++
T Consensus 476 l------------------------~tIP~PLlDRM-EiI~lsgYt~~EKl~IAk~~L--iPk~~~~~gL~~~el~i~d~ 528 (782)
T COG0466 476 L------------------------DTIPAPLLDRM-EVIRLSGYTEDEKLEIAKRHL--IPKQLKEHGLKKGELTITDE 528 (782)
T ss_pred c------------------------ccCChHHhcce-eeeeecCCChHHHHHHHHHhc--chHHHHHcCCCccceeecHH
Confidence 2 24688999999 799999999999999999988 5566666654 4889999
Q ss_pred HHHHHHHhcccccccccccccchHHHHHHHHhh
Q psy14504 670 ALKKISNIGFDLIYGARDVHGCKKSLSILLKKI 702 (951)
Q Consensus 670 ~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~ 702 (951)
++..|.+ .|.+.-|+|.+.+. +.++.+++
T Consensus 529 ai~~iI~-~YTREAGVR~LeR~---i~ki~RK~ 557 (782)
T COG0466 529 AIKDIIR-YYTREAGVRNLERE---IAKICRKA 557 (782)
T ss_pred HHHHHHH-HHhHhhhhhHHHHH---HHHHHHHH
Confidence 9999998 59999999999999 55544443
No 18
>PRK13625 bis(5'-nucleosyl)-tetraphosphatase PrpE; Provisional
Probab=100.00 E-value=3.2e-32 Score=286.06 Aligned_cols=208 Identities=24% Similarity=0.419 Sum_probs=152.3
Q ss_pred cccccccccchHHHHHHHHhhccc--------CCccceeecccccCCcceEehhHHHHHhc--CCccEEEcCCChHHHHH
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKK--------SPEANFIFLGDLINKGPQSLDTLRMVYSM--RNYAKIVLGNHEIHLLD 751 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~--------~~~~~li~~gd~~~~g~~~~~~l~~~~~~--~~~~~~v~GNHe~~~l~ 751 (951)
.+.+||||||+++|.++|++++|+ +..|.+|++||++||||.|.+|+++++++ .+++.+|+||||.|+++
T Consensus 3 ~~vIGDIHG~~~~L~~lL~~~~~~~~~~~~~~~~~d~li~lGDliDRGp~S~~vl~~~~~~~~~~~~~~l~GNHE~~~l~ 82 (245)
T PRK13625 3 YDIIGDIHGCYQEFQALTEKLGYNWSSGLPVHPDQRKLAFVGDLTDRGPHSLRMIEIVWELVEKKAAYYVPGNHCNKLYR 82 (245)
T ss_pred eEEEEECccCHHHHHHHHHHcCCCcccCcccCCCCCEEEEECcccCCCcChHHHHHHHHHHhhCCCEEEEeCccHHHHHH
Confidence 367999999999999999999986 45789999999999999999999999887 44789999999999999
Q ss_pred HHhhcc---cCCccccHHHhhCCC------CHHHHHHHHhcCCceEEe--CCEEEEecccCcCCCHHHHHHHhHHHHHHh
Q psy14504 752 VLININ---KKSKLDTFDDILDAP------DKKKLVSWLRTQPLAIYY--KKYLMIHAGVAKQWTAQQTIKLSHQVEKIL 820 (951)
Q Consensus 752 ~~~~~~---~~~~~~~~~~~~~~~------~~~~~~~~l~~~p~~~~~--~~~~~vHAG~~p~~~~~~~~~~~~~~~~~l 820 (951)
++.+.. .++...++.++.... ..+.+.+|++++|+++.. ++++|||||++|.+..... ......+
T Consensus 83 ~~~~~~~~~~~gg~~tl~~~~~~~~~~~~~~~~~~~~~~~~lPl~~~~~~~~~~~vHAG~~~~~~~~~~----~~~~~~~ 158 (245)
T PRK13625 83 FFLGRNVTIAHGLETTVAEYEALPSHKQNMIKEKFITLYEQAPLYHILDEGRLVVAHAGIRQDYIGRQD----KKVQTFV 158 (245)
T ss_pred HHhCCCccccchhHhHHHHHhccChhhHHHHHHHHHHHHHhCCceEEEeCCCEEEEECCCChHhcccch----hhhhhHH
Confidence 886432 233445555553322 236789999999999865 6799999999986311000 0111000
Q ss_pred hcccHHhHHHHhcCC-CCCCCCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCC
Q psy14504 821 RTSYWKNLFFKLYNH-NSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNR 899 (951)
Q Consensus 821 ~~~~~~~~~~~~~~~-~~~~w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~ 899 (951)
+++. ....|.. ......+|.+.+.+
T Consensus 159 -----------l~~~~~~~~~~~-------------------------------------------~~~~~~~~~~~~~g 184 (245)
T PRK13625 159 -----------LYGDITGEKHPD-------------------------------------------GSPVRRDWAKEYKG 184 (245)
T ss_pred -----------hhccccCCcCCC-------------------------------------------CCeeeeccchhcCC
Confidence 0100 0000100 00112356655543
Q ss_pred CCCCceEEEccCCCCCcccCCCeEEcccccccCCeEEEEEecCCceEEeec
Q psy14504 900 KTIDITVLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 950 (951)
Q Consensus 900 ~~~~~~vv~GH~~~~~~~~~~~~~~lDtG~v~gg~Ltal~l~~~~~~~v~~ 950 (951)
...|||||||+..+...+|.++|||||+|||+|||++++++++++|++
T Consensus 185 ---~~~vV~GHtp~~~~~~~~~~i~IDtGa~~gG~Ltal~l~~~~~~~v~~ 232 (245)
T PRK13625 185 ---TAWIVYGHTPVKEPRFVNHTVNIDTGCVFGGRLTALRYPEMETVSVPS 232 (245)
T ss_pred ---CcEEEECCCCCccceecCCeEEEECcCccCCEEEEEECCCCcEEEEEC
Confidence 568999999999998889999999999999999999999999999986
No 19
>cd07413 MPP_PA3087 Pseudomonas aeruginosa PA3087 and related proteins, metallophosphatase domain. PA3087 is an uncharacterized protein from Pseudomonas aeruginosa with a metallophosphatase domain that belongs to the phosphoprotein phosphatase (PPP) family. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of
Probab=99.97 E-value=2.8e-31 Score=274.26 Aligned_cols=193 Identities=28% Similarity=0.449 Sum_probs=138.6
Q ss_pred ccccccccchHHHHHHHHhhccc-------CCccceeecccccCCcceEehhHHHHHhcC--CccEEEcCCChHHHHHHH
Q psy14504 683 YGARDVHGCKKSLSILLKKIHKK-------SPEANFIFLGDLINKGPQSLDTLRMVYSMR--NYAKIVLGNHEIHLLDVL 753 (951)
Q Consensus 683 ~g~~dlhg~~~~l~~~l~~~~~~-------~~~~~li~~gd~~~~g~~~~~~l~~~~~~~--~~~~~v~GNHe~~~l~~~ 753 (951)
+.+||||||+++|.++|++++|+ ++.+.+||+||++||||.|.+|+++++++. .++.+|+||||.|+++++
T Consensus 2 ~vIGDIHG~~~~L~~lL~~i~~~~~~~~~~~~~d~lvflGD~IDRGp~S~~vl~~l~~l~~~~~~~~l~GNHE~~ll~~~ 81 (222)
T cd07413 2 DFIGDIHGHAEKLVVLLHKLGYQELSGVYRHPERQVVFLGDLIDRGPEIRELLEIVKSMVDAGHALAVMGNHEFNAIAWH 81 (222)
T ss_pred EEEEeccCCHHHHHHHHHHcCCCccccccCCCCCEEEEeCcccCCCCCHHHHHHHHHHhhcCCCEEEEEccCcHHHHHhh
Confidence 56899999999999999999986 256899999999999999999999999873 468899999999999987
Q ss_pred hhccc-------CCc------cccHHHhh-CCCCHHHHHHHHhcCCceEEeCCEEEEecccCcCCCHHHHHHHhHHHHHH
Q psy14504 754 ININK-------KSK------LDTFDDIL-DAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQWTAQQTIKLSHQVEKI 819 (951)
Q Consensus 754 ~~~~~-------~~~------~~~~~~~~-~~~~~~~~~~~l~~~p~~~~~~~~~~vHAG~~p~~~~~~~~~~~~~~~~~ 819 (951)
.+... .+. ..++..+. .....+.+++||+++|++++.++++|||||+.+.+.
T Consensus 82 ~~~~~~~~w~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~VHAg~~~~l~-------------- 147 (222)
T cd07413 82 TKDPSGGEWLRAHSKKNLRQHQAFLEQFREHSEEHKDWLEWFKTLPLFLDLGGVRVVHACWDETLL-------------- 147 (222)
T ss_pred hCCcccchhhhcCCCcccccHHHHHHHHhccchhHHHHHHHHhcCCcEEEECCEEEEECCcCHhhc--------------
Confidence 54210 111 12222221 223457899999999999999999999999863210
Q ss_pred hhcccHHhHHHHhcCCCCCCCCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCC
Q psy14504 820 LRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNR 899 (951)
Q Consensus 820 l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~ 899 (951)
|.+.. . ....+.|.+..+. .......||+.
T Consensus 148 --------------------~~~~~-----~----------~~~~~~~~~~~~~-----------~~~~~~~~~~~---- 177 (222)
T cd07413 148 --------------------KGPEI-----A----------LPEGHSFVDKDGI-----------VRDNIRVKWWG---- 177 (222)
T ss_pred --------------------cCCCc-----C----------CCCCceeecCCCc-----------cccccchhhcC----
Confidence 11110 0 0001122221110 00112234542
Q ss_pred CCCCceEEEccCCCCC--cccCCCeEEcccccccCCeEEEEEecCC
Q psy14504 900 KTIDITVLFGHWSTLG--LIMKPNIICLDTGCVWGNKLTALCLEDR 943 (951)
Q Consensus 900 ~~~~~~vv~GH~~~~~--~~~~~~~~~lDtG~v~gg~Ltal~l~~~ 943 (951)
..|||||||+++ +...+|++||||||++||+|||++++++
T Consensus 178 ----~~Vv~GHt~~~~~~~~~~~~~i~iDTGA~~~G~Lta~~~~~~ 219 (222)
T cd07413 178 ----KPVFVGHYWLNGEPAPLNPNVACLDYSAAKGGKLVAYRWDGE 219 (222)
T ss_pred ----CCEEEecCCCCCCCccccCCEEEEecccccCCeeEEEEcCCc
Confidence 469999999965 7888999999999999999999999875
No 20
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.96 E-value=1.9e-28 Score=270.50 Aligned_cols=260 Identities=25% Similarity=0.389 Sum_probs=202.2
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCC----CC-----CCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce
Q psy14504 431 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSD----AK-----RPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI 501 (951)
Q Consensus 431 l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~----~~-----~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~ 501 (951)
..++++.|.+.|+||+++++.+..++..+..++.. +. .+.+++||+||||||||++|++||+.+ +.+|
T Consensus 68 p~~i~~~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l---~~pf 144 (413)
T TIGR00382 68 PKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL---NVPF 144 (413)
T ss_pred HHHHHHHhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc---CCCe
Confidence 45678899999999999999999988655444322 11 123589999999999999999999988 6688
Q ss_pred EEeccccccchhchhcccCCCCCCccccccchhHHHHH-------hCCCeEEEEccccccCH--------------HHHH
Q psy14504 502 IRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKANS--------------DVFN 560 (951)
Q Consensus 502 ~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~iDEid~~~~--------------~~~~ 560 (951)
..++++.+. +++|+|.+....+...++ .+.++||||||+|++++ .+|+
T Consensus 145 ~~~da~~L~-----------~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~ 213 (413)
T TIGR00382 145 AIADATTLT-----------EAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQ 213 (413)
T ss_pred EEechhhcc-----------ccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHH
Confidence 888876553 246888876666655543 34568999999999987 6999
Q ss_pred HHHHHhhcceeec---CCCeEeecCCeEEEEecCC---------Cchhhhhh--------cc-c--c-H----HHHHHHH
Q psy14504 561 ILLQILDDGRLTD---NRGRTINFRNTIIVMTSNL---------GSDKIKEM--------EK-G--D-K----EIIKLAV 612 (951)
Q Consensus 561 ~Ll~~le~g~~~~---~~g~~~~~~~~iiI~ttn~---------~~~~~~~~--------~~-~--~-~----~~~~~~~ 612 (951)
.||++|+ |.+++ ..|+.+++.++++|+|+|. +.+.+... +. + . . ..+....
T Consensus 214 ~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~ 292 (413)
T TIGR00382 214 ALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVE 292 (413)
T ss_pred HHHHHhh-ccceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHH
Confidence 9999996 88876 5689999999999999998 43332221 01 0 0 0 1112222
Q ss_pred -HHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHH----HHHHHHHHHhcCCccccchHHHHHHHHhcccccccccc
Q psy14504 613 -MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ----LNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARD 687 (951)
Q Consensus 613 -~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~----l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~d 687 (951)
.+..+..|.|||++|+|.++.|.||+.+++.+|+... ++++...+...++.+.++++++++|++.+|++.+|+|.
T Consensus 293 ~~dl~~~g~~PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~ 372 (413)
T TIGR00382 293 PEDLVKFGLIPEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARG 372 (413)
T ss_pred HHHHHHHhhHHHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchH
Confidence 2344556999999999999999999999999999975 55556666667999999999999999999999999999
Q ss_pred cccchHHHHHHHHhhcccCCc
Q psy14504 688 VHGCKKSLSILLKKIHKKSPE 708 (951)
Q Consensus 688 lhg~~~~l~~~l~~~~~~~~~ 708 (951)
|++. +++.+...-|+-+.
T Consensus 373 Lr~i---ie~~l~~~m~e~p~ 390 (413)
T TIGR00382 373 LRSI---VEGLLLDVMFDLPS 390 (413)
T ss_pred HHHH---HHHhhHHHHhhCCC
Confidence 9999 89988887776554
No 21
>cd07423 MPP_PrpE Bacillus subtilis PrpE and related proteins, metallophosphatase domain. PrpE (protein phosphatase E) is a bacterial member of the PPP (phosphoprotein phosphatase) family of serine/threonine phosphatases and a key signal transduction pathway component controlling the expression of spore germination receptors GerA and GerK in Bacillus subtilis. PrpE is closely related to ApaH (also known symmetrical Ap(4)A hydrolase and bis(5'nucleosyl)-tetraphosphatase). PrpE has specificity for phosphotyrosine only, unlike the serine/threonine phosphatases to which it is related. The Bacilli members of this family are single domain proteins while the other members have N- and C-terminal domains in addition to this phosphatase domain. The PPP (phosphoprotein phosphatase) family, to which PrpE belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpA/Prp
Probab=99.96 E-value=3e-29 Score=262.68 Aligned_cols=209 Identities=28% Similarity=0.405 Sum_probs=148.9
Q ss_pred cccccccccchHHHHHHHHhhcccC---------CccceeecccccCCcceEehhHHHHHhc--CCccEEEcCCChHHHH
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKKS---------PEANFIFLGDLINKGPQSLDTLRMVYSM--RNYAKIVLGNHEIHLL 750 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~~---------~~~~li~~gd~~~~g~~~~~~l~~~~~~--~~~~~~v~GNHe~~~l 750 (951)
...++|||||+.+|+++|++++|.+ ..|.++++||++||||.+.+|+++++++ +.++.+|+||||.+++
T Consensus 3 i~vigDIHG~~~~L~~ll~~~~~~~~~~~~~~~~~~d~lv~lGDlIDrG~~s~evl~~l~~l~~~~~~~~v~GNHE~~l~ 82 (234)
T cd07423 3 FDIIGDVHGCYDELEELLEKLGYRIKRVGTVTHPEGRRAVFVGDLVDRGPDSPEVLRLVMSMVAAGAALCVPGNHDNKLY 82 (234)
T ss_pred eEEEEECCCCHHHHHHHHHHcCCccccCccccCCCCCEEEEECCccCCCCCHHHHHHHHHHHhhCCcEEEEECCcHHHHH
Confidence 3568999999999999999998863 2579999999999999999999999987 3468899999999999
Q ss_pred HHHhhccc---CCccccHHHhh--CCCCHHHHHHHHhcCCceEEe--CCEEEEecccCcCCCHHHHHHHhHHHHHHhhcc
Q psy14504 751 DVLININK---KSKLDTFDDIL--DAPDKKKLVSWLRTQPLAIYY--KKYLMIHAGVAKQWTAQQTIKLSHQVEKILRTS 823 (951)
Q Consensus 751 ~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~l~~~p~~~~~--~~~~~vHAG~~p~~~~~~~~~~~~~~~~~l~~~ 823 (951)
+++.+... .+...++..+. .....+++++||++||++++. ++++|||||++|.+..... .. +.
T Consensus 83 ~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHag~~~~~~~~~~----~~----~~-- 152 (234)
T cd07423 83 RKLQGRNVKITHGLEETVAQLEAESEEFKEEVIEFYESLPSHLVLDEGKLVVAHAGIKEEMIGRDS----KR----VR-- 152 (234)
T ss_pred HHhcCCCccccCcccchHHHHhhccHHHHHHHHHHHHhCCcEEEeCCCcEEEEeCCCChHhccccc----hh----he--
Confidence 98865321 22234444432 122357789999999999874 3699999998875321100 00 00
Q ss_pred cHHhHHHHhcCCCCCCCCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCCCCCC
Q psy14504 824 YWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTID 903 (951)
Q Consensus 824 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 903 (951)
....|.+.. .. .. ........+|.+.+. +.
T Consensus 153 ------------~~~~~~~~~-------------------~~--~~--------------~~~~~~~~~~~~~~~---~~ 182 (234)
T cd07423 153 ------------SFALYGDTT-------------------GE--TD--------------EFGLPVRRDWAKEYR---GD 182 (234)
T ss_pred ------------eeeeccccc-------------------CC--cC--------------CCCCccchhhHhhCC---CC
Confidence 000011000 00 00 000011234554443 35
Q ss_pred ceEEEccCCCCCcccCCCeEEcccccccCCeEEEEEecCCceEEeec
Q psy14504 904 ITVLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 950 (951)
Q Consensus 904 ~~vv~GH~~~~~~~~~~~~~~lDtG~v~gg~Ltal~l~~~~~~~v~~ 950 (951)
.+||||||++..+...++.++|||||||||+|||+++++++++||+.
T Consensus 183 ~~vv~GHt~~~~~~~~~~~i~IDtGav~gG~Lt~l~~~~~~~~~~~~ 229 (234)
T cd07423 183 ALVVYGHTPVPEPRWLNNTINIDTGCVFGGKLTALRYPEREIVSVPA 229 (234)
T ss_pred eEEEECCCCCccceEeCCEEEEECCCCCCCcceEEECCCCcEEEeec
Confidence 68999999999988889999999999999999999999999999975
No 22
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.96 E-value=3.2e-27 Score=287.40 Aligned_cols=358 Identities=23% Similarity=0.327 Sum_probs=276.7
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q psy14504 275 PEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINK 354 (951)
Q Consensus 275 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (951)
++..++++..+..+..|++.++.++++.++ +++++++.|++|...++...+++++.+.. ...+++++++++++.
T Consensus 185 ~d~~~RL~~l~~lL~~ele~l~l~~~I~~~-----v~~~~~~~qr~~~Lreqlk~i~~eLg~~~-~~~~~~~~~~~k~~~ 258 (775)
T TIGR00763 185 VNIEKRLKKALELLKKELELLKLQNKITKK-----VEEKMEKTQREYYLREQLKAIKKELGIEK-DDKDELEKLKEKLEE 258 (775)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CchhHHHHHHHHHHh
Confidence 444578888999999999999988777665 99999999999999999999999987542 344577888888877
Q ss_pred hhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCCcccchHHHHHHHHH
Q psy14504 355 ATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNI 434 (951)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l 434 (951)
+. ..+++.+....++.++++ +++.++++.++ ..++.+++++||.+.... ...+..+
T Consensus 259 ~~---~~~~~~~~~~~e~~~~~~-----------~~~~~~~~~~~---------~~yl~~~~~ip~~~~~~~-~~~~~~~ 314 (775)
T TIGR00763 259 LK---LPEEVKKVIEKELTKLSL-----------LEPSSSEFTVT---------RNYLDWLTDLPWGKYSKE-NLDLKRA 314 (775)
T ss_pred cC---CCHHHHHHHHHHHHHHHc-----------CCCCCchHHHH---------HHHHHHHHCCCCcccccc-hhhHHHH
Confidence 66 566677666666666664 55555555554 448889999999887666 5678899
Q ss_pred HHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhc
Q psy14504 435 ENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS 514 (951)
Q Consensus 435 ~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~ 514 (951)
++.|.+.++|++.+++.+...+...... ..++.| +++|+||||||||++|++||+.+ +.+++.++++.+.+
T Consensus 315 ~~~l~~~~~G~~~~k~~i~~~~~~~~~~-~~~~~~--~lll~GppG~GKT~lAk~iA~~l---~~~~~~i~~~~~~~--- 385 (775)
T TIGR00763 315 KEILDEDHYGLKKVKERILEYLAVQKLR-GKMKGP--ILCLVGPPGVGKTSLGKSIAKAL---NRKFVRFSLGGVRD--- 385 (775)
T ss_pred HHHhhhhcCChHHHHHHHHHHHHHHHhh-cCCCCc--eEEEECCCCCCHHHHHHHHHHHh---cCCeEEEeCCCccc---
Confidence 9999999999999999999877544321 112222 69999999999999999999999 66888888876543
Q ss_pred hhcccCCCCCCccccccchhHHHHH-hCCCeEEEEccccccCHHH----HHHHHHHhhc---ceeecCC-CeEeecCCeE
Q psy14504 515 ISRLIGAPPGYIGYEEGGYLTEIVR-RKPYSLILLDEIEKANSDV----FNILLQILDD---GRLTDNR-GRTINFRNTI 585 (951)
Q Consensus 515 ~~~l~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~iDEid~~~~~~----~~~Ll~~le~---g~~~~~~-g~~~~~~~~i 585 (951)
.+.+.|+...|+|...+........ ...++||||||||++++.. .++|+++|+. +.+.|.. +..+++++++
T Consensus 386 ~~~i~g~~~~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~ 465 (775)
T TIGR00763 386 EAEIRGHRRTYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDVPFDLSKVI 465 (775)
T ss_pred HHHHcCCCCceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCceeccCCEE
Confidence 3445567777888776644432222 2234699999999998743 5889999984 5666654 6778889999
Q ss_pred EEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCC---
Q psy14504 586 IVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNM--- 662 (951)
Q Consensus 586 iI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~--- 662 (951)
||+|||.. ..++|+|++|| .+|.|++|+.++..+|++.++.. +.+...++
T Consensus 466 ~I~TtN~~------------------------~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~--~~~~~~~l~~~ 518 (775)
T TIGR00763 466 FIATANSI------------------------DTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIP--KALEDHGLKPD 518 (775)
T ss_pred EEEecCCc------------------------hhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHH--HHHHHcCCCcc
Confidence 99999963 24789999999 58999999999999999888743 33343443
Q ss_pred ccccchHHHHHHHHhcccccccccccccchHHHHHHHHhh
Q psy14504 663 DLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKI 702 (951)
Q Consensus 663 ~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~ 702 (951)
.+.++++++.+|++ .|.+.+|+|++.+. ++++++++
T Consensus 519 ~~~~~~~~l~~i~~-~~~~e~g~R~l~r~---i~~~~~~~ 554 (775)
T TIGR00763 519 ELKITDEALLLLIK-YYTREAGVRNLERQ---IEKICRKA 554 (775)
T ss_pred eEEECHHHHHHHHH-hcChhcCChHHHHH---HHHHHHHH
Confidence 47899999999998 79999999999999 66666544
No 23
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.96 E-value=2.8e-27 Score=283.86 Aligned_cols=357 Identities=20% Similarity=0.302 Sum_probs=280.4
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q psy14504 275 PEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINK 354 (951)
Q Consensus 275 ~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 354 (951)
++..++++..+..+..|++.++.+.++.++ +++++++.|++|...+|...+++++.+.. ..+.++++++++++.
T Consensus 187 ~d~~eRLe~Ll~lL~~Eleil~l~~~I~~~-----v~~~~~k~q~e~~lreq~~~i~~elg~~~-~~~~~~~~~~~~~~~ 260 (784)
T PRK10787 187 SDVNERLEYLMAMMESEIDLLQVEKRIRNR-----VKKQMEKSQREYYLNEQMKAIQKELGEMD-DAPDENEALKRKIDA 260 (784)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHhhhhhhhcchhhhhhhcccccCCC-cchhHHHHHHHHHHh
Confidence 444578888899999999998888776665 99999999999999999999999997643 334577888888876
Q ss_pred hhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCCcccchHHHHHHHHH
Q psy14504 355 ATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNI 434 (951)
Q Consensus 355 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l 434 (951)
+. ..+++.+....++.++++ +++.++++.++++ ++.+.+.+||...+.+. ..+.+.
T Consensus 261 ~~---~~~~~~~~~~~e~~~~~~-----------~~~~~~e~~~~~~---------yl~~~~~~pw~~~~~~~-~~~~~~ 316 (784)
T PRK10787 261 AK---MPKEAKEKAEAELQKLKM-----------MSPMSAEATVVRG---------YIDWMVQVPWNARSKVK-KDLRQA 316 (784)
T ss_pred cC---CCHHHHHHHHHHHHHHHh-----------CCCCCchHHHHHH---------HHHHHHhCCCCCCCccc-ccHHHH
Confidence 65 556777777777777765 6677777777665 88889999998876643 468889
Q ss_pred HHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhc
Q psy14504 435 ENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS 514 (951)
Q Consensus 435 ~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~ 514 (951)
++.|++...|++.+++.+...+..... ......+ .++|+||||||||++|+.+|+.+ +.++++++++...+
T Consensus 317 ~~~l~~~~~g~~~vK~~i~~~l~~~~~-~~~~~g~--~i~l~GppG~GKTtl~~~ia~~l---~~~~~~i~~~~~~d--- 387 (784)
T PRK10787 317 QEILDTDHYGLERVKDRILEYLAVQSR-VNKIKGP--ILCLVGPPGVGKTSLGQSIAKAT---GRKYVRMALGGVRD--- 387 (784)
T ss_pred HHHhhhhccCHHHHHHHHHHHHHHHHh-cccCCCc--eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEEcCCCCC---
Confidence 999999999999999999988764332 1112223 59999999999999999999998 66788888776544
Q ss_pred hhcccCCCCCCccccccchhHHHHHh-CCCeEEEEccccccCHHH----HHHHHHHhhcc---eeecCC-CeEeecCCeE
Q psy14504 515 ISRLIGAPPGYIGYEEGGYLTEIVRR-KPYSLILLDEIEKANSDV----FNILLQILDDG---RLTDNR-GRTINFRNTI 585 (951)
Q Consensus 515 ~~~l~g~~~~~~g~~~~~~l~~~~~~-~~~~vl~iDEid~~~~~~----~~~Ll~~le~g---~~~~~~-g~~~~~~~~i 585 (951)
...+.|+...|+|...++.+...... ..+.|+||||+|++++.. +++|+++++.+ .+.|.. ...+++++++
T Consensus 388 ~~~i~g~~~~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~ 467 (784)
T PRK10787 388 EAEIRGHRRTYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVAFSDHYLEVDYDLSDVM 467 (784)
T ss_pred HHHhccchhccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEEEecccccccccCCceE
Confidence 35566777778888777555444332 246799999999999875 59999999864 555654 4467889999
Q ss_pred EEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHH-HHHHHHHhcCCcc
Q psy14504 586 IVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLN-ILKNKLLKMNMDL 664 (951)
Q Consensus 586 iI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~-~~~~~~~~~~~~l 664 (951)
||+|+|.- .++|+|++|+ .+|.|.+|+.+++.+|++.++. +...+....+..+
T Consensus 468 ~i~TaN~~-------------------------~i~~aLl~R~-~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l 521 (784)
T PRK10787 468 FVATSNSM-------------------------NIPAPLLDRM-EVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGEL 521 (784)
T ss_pred EEEcCCCC-------------------------CCCHHHhcce-eeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeE
Confidence 99999852 2689999999 5999999999999999999985 3333333345578
Q ss_pred ccchHHHHHHHHhcccccccccccccchHHHHHHHH
Q psy14504 665 KISKAALKKISNIGFDLIYGARDVHGCKKSLSILLK 700 (951)
Q Consensus 665 ~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~ 700 (951)
.++++++++|++ +|.+.+|+|++.+. ++++++
T Consensus 522 ~i~~~ai~~ii~-~yt~e~GaR~LeR~---I~~i~r 553 (784)
T PRK10787 522 TVDDSAIIGIIR-YYTREAGVRSLERE---ISKLCR 553 (784)
T ss_pred EECHHHHHHHHH-hCCcccCCcHHHHH---HHHHHH
Confidence 999999999997 89999999999999 665553
No 24
>KOG0741|consensus
Probab=99.95 E-value=2.3e-27 Score=253.72 Aligned_cols=187 Identities=21% Similarity=0.285 Sum_probs=139.1
Q ss_pred HHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhc----
Q psy14504 60 LQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---- 135 (951)
Q Consensus 60 l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---- 135 (951)
|..+...++|||||||||||.+||.|.+.|... -|.+ ++.-.+. .+|+|++|++++.+|..|.+.
T Consensus 251 lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNAr-ePKI--------VNGPeIL--~KYVGeSE~NvR~LFaDAEeE~r~~ 319 (744)
T KOG0741|consen 251 LGIKHVKGILLYGPPGTGKTLIARQIGKMLNAR-EPKI--------VNGPEIL--NKYVGESEENVRKLFADAEEEQRRL 319 (744)
T ss_pred cCccceeeEEEECCCCCChhHHHHHHHHHhcCC-CCcc--------cCcHHHH--HHhhcccHHHHHHHHHhHHHHHHhh
Confidence 345666789999999999999999999988432 2322 2333333 789999999999999988721
Q ss_pred ---CCCeEEEEecccccccCCCCCC-----chhHHhhhhhhcc----CCcEEEEEeecchHHHHhhhcCHHHhh--cceE
Q psy14504 136 ---QKDIIIFIDELHTMIGTGKVEG-----SIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFER--RFQK 201 (951)
Q Consensus 136 ---~~~~iL~iDEid~l~~~~~~~~-----~~~~~~~L~~~le----~~~i~vI~at~~~~~~~~~~~~~~l~~--Rf~~ 201 (951)
.+=.|+++||+|.++..+++.+ ...+.|.|+.-|+ -+.|.||+.||+.+ .+|.+|+| ||..
T Consensus 320 g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~D-----lIDEALLRPGRlEV 394 (744)
T KOG0741|consen 320 GANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKD-----LIDEALLRPGRLEV 394 (744)
T ss_pred CccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchh-----hHHHHhcCCCceEE
Confidence 2236999999999998776432 2456777777664 26899999999999 78999999 9997
Q ss_pred -EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhH
Q psy14504 202 -ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 202 -i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 268 (951)
+++..|+.+-|++||+-..++...+ +.--++-.++.++.++..|. ++...-++..|.+.+.
T Consensus 395 qmEIsLPDE~gRlQIl~IHT~rMre~-~~l~~dVdl~elA~lTKNfS-----GAEleglVksA~S~A~ 456 (744)
T KOG0741|consen 395 QMEISLPDEKGRLQILKIHTKRMREN-NKLSADVDLKELAALTKNFS-----GAELEGLVKSAQSFAM 456 (744)
T ss_pred EEEEeCCCccCceEEEEhhhhhhhhc-CCCCCCcCHHHHHHHhcCCc-----hhHHHHHHHHHHHHHH
Confidence 9999999999999998766665432 22223344677788876665 6667777766655443
No 25
>PRK11439 pphA serine/threonine protein phosphatase 1; Provisional
Probab=99.95 E-value=2.1e-28 Score=253.00 Aligned_cols=201 Identities=26% Similarity=0.371 Sum_probs=141.0
Q ss_pred HHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHH
Q psy14504 671 LKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLL 750 (951)
Q Consensus 671 ~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l 750 (951)
.+.+..+.+.+.|.++|||||+++|+++|++++|++..|+++++||++||||.|.+|++++++ .++.+|+||||.|++
T Consensus 8 ~~~~~~~~~~ri~vigDIHG~~~~L~~lL~~i~~~~~~D~li~lGDlvDrGp~s~~vl~~l~~--~~~~~v~GNHE~~~l 85 (218)
T PRK11439 8 YQRIAGHQWRHIWLVGDIHGCFEQLMRKLRHCRFDPWRDLLISVGDLIDRGPQSLRCLQLLEE--HWVRAVRGNHEQMAL 85 (218)
T ss_pred eecccCCCCCeEEEEEcccCCHHHHHHHHHhcCCCcccCEEEEcCcccCCCcCHHHHHHHHHc--CCceEeeCchHHHHH
Confidence 445555667788999999999999999999999987889999999999999999999999985 468899999999999
Q ss_pred HHHhhcccC----CccccHHHhhC--CCCHHHHHHHHhcCCceEEe----CCEEEEecccCcCCCHHHHHHHhHHHHHHh
Q psy14504 751 DVLININKK----SKLDTFDDILD--APDKKKLVSWLRTQPLAIYY----KKYLMIHAGVAKQWTAQQTIKLSHQVEKIL 820 (951)
Q Consensus 751 ~~~~~~~~~----~~~~~~~~~~~--~~~~~~~~~~l~~~p~~~~~----~~~~~vHAG~~p~~~~~~~~~~~~~~~~~l 820 (951)
+++.+.... .+...+...-. .....++++||++||++++. ++++|||||++..+..
T Consensus 86 ~~~~~~~~~~w~~~gg~~~~~l~~~~~~~~~~~~~~l~~LP~~~~~~~~~~~~~~vHAg~p~~~~~-------------- 151 (218)
T PRK11439 86 DALASQQMSLWLMNGGDWFIALTDNQQKQAKTLLEKCQRLPFILEVHCRTGKHVIAHADYPADVYE-------------- 151 (218)
T ss_pred HHHHCCccchhhhCCChhhhhcchhhhHHHHHHHHHHhcCCcEEEeeccCCCEEEEeCCCCCCchh--------------
Confidence 987543210 11111211110 11235678999999999873 4699999998532210
Q ss_pred hcccHHhHHHHhcCCCCCCCCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCCC
Q psy14504 821 RTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRK 900 (951)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~ 900 (951)
|... ....+..|.+ .++... . ++ ...
T Consensus 152 ----~~~~----~~~~~~~w~r----------------------~~~~~~-------------------~-~~----~~~ 177 (218)
T PRK11439 152 ----WQKD----VDLHQVLWSR----------------------SRLGER-------------------Q-KG----QGI 177 (218)
T ss_pred ----hhcc----CCccceEEcC----------------------hhhhhc-------------------c-cc----ccc
Confidence 0000 0001122332 122110 0 00 011
Q ss_pred CCCceEEEccCCCCCcccCCCeEEcccccccCCeEEEEEec
Q psy14504 901 TIDITVLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLE 941 (951)
Q Consensus 901 ~~~~~vv~GH~~~~~~~~~~~~~~lDtG~v~gg~Ltal~l~ 941 (951)
.+...|||||||+..+...++.++|||||||||+|||++++
T Consensus 178 ~~~~~vv~GHT~~~~~~~~~~~i~IDtGav~gg~Lt~l~~~ 218 (218)
T PRK11439 178 TGADHFWFGHTPLRHRVDIGNLHYIDTGAVFGGELTLVQLQ 218 (218)
T ss_pred cCCCEEEECCccCCCccccCCEEEEECCCCCCCeeEEEEcC
Confidence 12347999999999988889999999999999999999874
No 26
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.95 E-value=2.5e-27 Score=263.97 Aligned_cols=260 Identities=25% Similarity=0.366 Sum_probs=196.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCC-------CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14504 431 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLS-------DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 503 (951)
Q Consensus 431 l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~-------~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~ 503 (951)
..++.+.|++.|+||+.+++.+..++..+...+. +...+.+++||+||||||||++|++||..+ +.+|+.
T Consensus 62 p~~i~~~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l---~~pf~~ 138 (412)
T PRK05342 62 PKEIKAHLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL---DVPFAI 138 (412)
T ss_pred HHHHHHHHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh---CCCcee
Confidence 4567788999999999999999888744322221 122345689999999999999999999988 679999
Q ss_pred eccccccchhchhcccCCCCCCccccccchhHHH-------HHhCCCeEEEEccccccCH--------------HHHHHH
Q psy14504 504 IDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEI-------VRRKPYSLILLDEIEKANS--------------DVFNIL 562 (951)
Q Consensus 504 ~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~-------~~~~~~~vl~iDEid~~~~--------------~~~~~L 562 (951)
++++.+.. .+|+|.+....+... +..+.++||||||||++++ .+|+.|
T Consensus 139 id~~~l~~-----------~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~L 207 (412)
T PRK05342 139 ADATTLTE-----------AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQAL 207 (412)
T ss_pred cchhhccc-----------CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHH
Confidence 99987653 368887766555443 2356789999999999975 499999
Q ss_pred HHHhhccee--ecCCCeEeecCCeEEEEecCC---------Cchhhhhh--------cccc----H-----HHHHHHH--
Q psy14504 563 LQILDDGRL--TDNRGRTINFRNTIIVMTSNL---------GSDKIKEM--------EKGD----K-----EIIKLAV-- 612 (951)
Q Consensus 563 l~~le~g~~--~~~~g~~~~~~~~iiI~ttn~---------~~~~~~~~--------~~~~----~-----~~~~~~~-- 612 (951)
|++||.... ++..|+..++.+.++|.|+|. +.+.+... ++.. . ..+...+
T Consensus 208 L~~Leg~~~~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~ 287 (412)
T PRK05342 208 LKILEGTVASVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEP 287 (412)
T ss_pred HHHHhcCeEEeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCH
Confidence 999985433 345677777777777777776 22221111 1100 0 1222222
Q ss_pred HHHHHhccChhHhhccCcEEEecCCChhhHHHHHH----HHHHHHHHHHHhcCCccccchHHHHHHHHhccccccccccc
Q psy14504 613 MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDV 688 (951)
Q Consensus 613 ~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dl 688 (951)
.+.....|.|||++|+|.++.|.||+.+++.+|+. ..++++...+...++.+.++++++++|++.+|.+.+|+|.|
T Consensus 288 ~dL~~~gf~PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~L 367 (412)
T PRK05342 288 EDLIKFGLIPEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGL 367 (412)
T ss_pred HHHHHHhhhHHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchH
Confidence 23345569999999999999999999999999998 46667777788889999999999999999999999999999
Q ss_pred ccchHHHHHHHHhhcccCC
Q psy14504 689 HGCKKSLSILLKKIHKKSP 707 (951)
Q Consensus 689 hg~~~~l~~~l~~~~~~~~ 707 (951)
++. +++.+...-|.-+
T Consensus 368 rri---ie~~l~~~~~~~p 383 (412)
T PRK05342 368 RSI---LEEILLDVMFELP 383 (412)
T ss_pred HHH---HHHHhHHHHHhcc
Confidence 999 8888877766443
No 27
>KOG2004|consensus
Probab=99.94 E-value=1.4e-25 Score=248.48 Aligned_cols=357 Identities=21% Similarity=0.315 Sum_probs=281.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhc
Q psy14504 279 DKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRK 358 (951)
Q Consensus 279 ~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 358 (951)
.+++..+..+..|.+..+.+..... .++..+..-+++|-..+|...+-+++..+...-.+..+.+++++.. .
T Consensus 279 ~Rl~~al~llkke~e~~klq~ki~k-----~vE~k~~~~~r~ylL~eQlk~IKkeLg~e~Ddkd~~~~~~~er~~~---~ 350 (906)
T KOG2004|consen 279 KRLEKALELLKKELELAKLQQKIGK-----EVEEKIKQDHREYLLREQLKAIKKELGIEKDDKDALVEKFRERIKS---L 350 (906)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhh-----HHHhhhhHHHHHHHHHHHHHHHHHhhCCCccchhhHHHHHHHHhhh---c
Confidence 6778888888888888777765443 4888999999999999999999999887666555566777777776 4
Q ss_pred CchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCCcccchHHHHHHHHHHHHh
Q psy14504 359 SDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLL 438 (951)
Q Consensus 359 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l 438 (951)
...+.+.+..+.++.+|+. +++.+++.++.++ ++.+++.+||.+.+.+ .-.+...+..|
T Consensus 351 ~~P~~v~kv~~eEl~kL~~-----------le~~~sEfnvtrN---------YLdwlt~LPWgk~S~E-n~dl~~Ak~iL 409 (906)
T KOG2004|consen 351 KMPDHVLKVIDEELTKLKL-----------LEPSSSEFNVTRN---------YLDWLTSLPWGKSSTE-NLDLARAKEIL 409 (906)
T ss_pred cCcHHHHHHHHHHHHHHhc-----------cCccccchhHHHH---------HHHHHHhCCCCCCChh-hhhHHHHHHhh
Confidence 4677788888877777765 4444556666655 8888999999988776 44577889999
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 518 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 518 (951)
.+.-.|.+++++++.+.+...+..- ..+++ .++|+||||+|||++|+.||+.+ +..|+++....+.+ ++.+
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrg-s~qGk--IlCf~GPPGVGKTSI~kSIA~AL---nRkFfRfSvGG~tD---vAeI 480 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRG-SVQGK--ILCFVGPPGVGKTSIAKSIARAL---NRKFFRFSVGGMTD---VAEI 480 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcc-cCCCc--EEEEeCCCCCCcccHHHHHHHHh---CCceEEEecccccc---HHhh
Confidence 9999999999999999997665321 22233 58999999999999999999999 77899998887765 5667
Q ss_pred cCCCCCCccccccchhHHHHH-hCCCeEEEEccccccCHH----HHHHHHHHhh---cceeecCC-CeEeecCCeEEEEe
Q psy14504 519 IGAPPGYIGYEEGGYLTEIVR-RKPYSLILLDEIEKANSD----VFNILLQILD---DGRLTDNR-GRTINFRNTIIVMT 589 (951)
Q Consensus 519 ~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~iDEid~~~~~----~~~~Ll~~le---~g~~~~~~-g~~~~~~~~iiI~t 589 (951)
-|+...|+|...++.+...-+ ...+.+++||||||+... -..+||++|| +..|.|.+ ...++.++++||+|
T Consensus 481 kGHRRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~DLSkVLFicT 560 (906)
T KOG2004|consen 481 KGHRRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPVDLSKVLFICT 560 (906)
T ss_pred cccceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhccccccchhheEEEEe
Confidence 799999999999877755443 234679999999999853 3578999997 45555554 67789999999999
Q ss_pred cCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCC---cccc
Q psy14504 590 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNM---DLKI 666 (951)
Q Consensus 590 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~---~l~~ 666 (951)
+|.- ..++|+|++|+ ++|.++-|..++..+|++.+|- .+..+..|+ .+.+
T Consensus 561 AN~i------------------------dtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLi--p~a~~~~gl~~e~v~i 613 (906)
T KOG2004|consen 561 ANVI------------------------DTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLI--PQALKDCGLKPEQVKI 613 (906)
T ss_pred cccc------------------------ccCChhhhhhh-heeeccCccHHHHHHHHHHhhh--hHHHHHcCCCHHhcCc
Confidence 9962 35789999999 7999999999999999999884 444455554 3789
Q ss_pred chHHHHHHHHhcccccccccccccchHHHHHHHHhhcc
Q psy14504 667 SKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHK 704 (951)
Q Consensus 667 ~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~ 704 (951)
+++++..|.+ .|.+.-|+|.+... +++..+++.+
T Consensus 614 s~~al~~lI~-~YcrEaGVRnLqk~---iekI~Rk~Al 647 (906)
T KOG2004|consen 614 SDDALLALIE-RYCREAGVRNLQKQ---IEKICRKVAL 647 (906)
T ss_pred cHHHHHHHHH-HHHHHHhHHHHHHH---HHHHHHHHHH
Confidence 9999988887 58899999999999 6665555543
No 28
>cd07421 MPP_Rhilphs Rhilph phosphatases, metallophosphatase domain. Rhilphs (Rhizobiales/ Rhodobacterales/ Rhodospirillaceae-like phosphatases) are a phylogenetically distinct group of PPP (phosphoprotein phosphatases), found only in land plants. They are named for their close relationship to to PPP phosphatases from alpha-Proteobacteria, including Rhizobiales, Rhodobacterales and Rhodospirillaceae. The PPP (phosphoprotein phosphatase) family, to which the Rhilphs belong, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central rol
Probab=99.94 E-value=8.5e-27 Score=240.45 Aligned_cols=205 Identities=21% Similarity=0.279 Sum_probs=144.2
Q ss_pred ccccccccccchHHHHHHHHhhccc-----CCccceeecccccCCcceEehhHHHHHhcCC-----ccEEEcCCChHHHH
Q psy14504 681 LIYGARDVHGCKKSLSILLKKIHKK-----SPEANFIFLGDLINKGPQSLDTLRMVYSMRN-----YAKIVLGNHEIHLL 750 (951)
Q Consensus 681 ~~~g~~dlhg~~~~l~~~l~~~~~~-----~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~-----~~~~v~GNHe~~~l 750 (951)
..|.++||||+++.|+++++.+..+ ...+.+||+||++||||++.+|+++++++.. .+.+|+||||.|++
T Consensus 3 ~iyaIGDIHG~~d~L~~lL~~I~~d~~~~~~~~~~iVfLGDyVDRGPdS~eVld~L~~l~~~~~~~~vv~LrGNHE~~~l 82 (304)
T cd07421 3 VVICVGDIHGYISKLNNLWLNLQSALGPSDFASALVIFLGDYCDRGPETRKVIDFLISLPEKHPKQRHVFLCGNHDFAFA 82 (304)
T ss_pred eEEEEEeccCCHHHHHHHHHHhhhhcCcCcCCCcEEEEeCCcCCCCCCHHHHHHHHHHhhhcccccceEEEecCChHHHH
Confidence 4688999999999999999887643 1345799999999999999999999998732 46799999999999
Q ss_pred HHHhh-ccc----------------------------------------------------------CCccccHHHh---
Q psy14504 751 DVLIN-INK----------------------------------------------------------KSKLDTFDDI--- 768 (951)
Q Consensus 751 ~~~~~-~~~----------------------------------------------------------~~~~~~~~~~--- 768 (951)
.++.+ ... .++..|+.++
T Consensus 83 ~fL~~~p~~~d~~~f~~~w~~~~~~~e~~~~~~~~~~~~~h~~g~~W~~~~~~~~~~~~~~~~~~~~~gg~~Tl~SYGv~ 162 (304)
T cd07421 83 AFLGVLPRPSDGSEFKSTWKEYEKNEEREGWYKGEGFENMHLQGRRWAGKMKVTFNTVRGEPYKGSIYDARPTFESYGVP 162 (304)
T ss_pred hHhhcCCCccchhhhhhhhccccccccccccccccccccccccccchhhhccccccccccccccccccCcHHHHHHcCCC
Confidence 99875 111 0112333332
Q ss_pred -----hCCCCHHHHHHHHhcCCceEEeCCE-------------EEEecccCcCCCHHHHHHHhHHHHHHhhcccHHhHHH
Q psy14504 769 -----LDAPDKKKLVSWLRTQPLAIYYKKY-------------LMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFF 830 (951)
Q Consensus 769 -----~~~~~~~~~~~~l~~~p~~~~~~~~-------------~~vHAG~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 830 (951)
+....+++|.+||++||.+++.+++ +|||||+.|..+.++ |.+. |+...+.
T Consensus 163 ~~~~~l~~avP~~H~~fl~~l~~~~~~~~~~~~~~~g~~~~~lifVHAGlrPg~pLe~------Q~~~-L~~~d~~---- 231 (304)
T cd07421 163 HGSSDLIKAVPEEHKKFLRNLVWVHEEDDVCIETEEGLKHCKLIAVHAGLEKSNSVEE------QLKL-LRTKDTS---- 231 (304)
T ss_pred cchHHHHHhCCHHHHHHHHhCCceEEeCcccccccccccccceEEEEcccCCCCChHH------hhhh-hhccccc----
Confidence 2223478999999999999999888 999999999766443 3221 2211111
Q ss_pred HhcCCCCCCCCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCCCCCCceEEEcc
Q psy14504 831 KLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGH 910 (951)
Q Consensus 831 ~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~vv~GH 910 (951)
....+..|- |..|++....+ ...+..||+||
T Consensus 232 --~p~~~~l~~----------------------R~~f~~~~~~~-------------------------~~~~~~VVhGH 262 (304)
T cd07421 232 --IPKIAPLSG----------------------RKNVWNIPQEL-------------------------ADKKTIVVSGH 262 (304)
T ss_pred --ccccccccc----------------------chhhhcCcccc-------------------------cCCCeEEEECC
Confidence 001122222 33333321110 12257899999
Q ss_pred CCCCCcccCCCeEEcccccccCCeEEE-EEecCCceEE
Q psy14504 911 WSTLGLIMKPNIICLDTGCVWGNKLTA-LCLEDRSIIQ 947 (951)
Q Consensus 911 ~~~~~~~~~~~~~~lDtG~v~gg~Lta-l~l~~~~~~~ 947 (951)
| ..+.+.++.++|||||+|+|+||| +++|+++++.
T Consensus 263 t--~~~~~~~~Ri~iDtGa~~~~~l~aa~vlp~~~~~~ 298 (304)
T cd07421 263 H--GKLHIDGLRLIIDEGGGFDDRPIAAIVLPSKEIIR 298 (304)
T ss_pred C--CCceecCCEEEEECCCCcCCceeEEEEeccceeEe
Confidence 9 568899999999999999998665 5568888876
No 29
>PHA02239 putative protein phosphatase
Probab=99.93 E-value=7.2e-26 Score=234.11 Aligned_cols=124 Identities=23% Similarity=0.471 Sum_probs=97.7
Q ss_pred cccccccccchHHHHHHHHhhcccC-CccceeecccccCCcceEehhHHHHHhc---CCccEEEcCCChHHHHHHHhhcc
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKKS-PEANFIFLGDLINKGPQSLDTLRMVYSM---RNYAKIVLGNHEIHLLDVLININ 757 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~~-~~~~li~~gd~~~~g~~~~~~l~~~~~~---~~~~~~v~GNHe~~~l~~~~~~~ 757 (951)
.|.++|||||++.+.++++.+..+. +.|.++++||++|+|+.+.+|+++++++ ...+.+|+||||.|+++++.+..
T Consensus 3 ~~~IsDIHG~~~~l~~ll~~i~~~~~~~d~li~lGD~iDrG~~s~~v~~~l~~~~~~~~~~~~l~GNHE~~~l~~~~~~~ 82 (235)
T PHA02239 3 IYVVPDIHGEYQKLLTIMDKINNERKPEETIVFLGDYVDRGKRSKDVVNYIFDLMSNDDNVVTLLGNHDDEFYNIMENVD 82 (235)
T ss_pred EEEEECCCCCHHHHHHHHHHHhhcCCCCCEEEEecCcCCCCCChHHHHHHHHHHhhcCCCeEEEECCcHHHHHHHHhCch
Confidence 4789999999999999999987543 4689999999999999999999998775 33688999999999999885433
Q ss_pred c----------CCccccHHHhh------------------------------CCCCHHHHHHHHhcCCceEEeCCEEEEe
Q psy14504 758 K----------KSKLDTFDDIL------------------------------DAPDKKKLVSWLRTQPLAIYYKKYLMIH 797 (951)
Q Consensus 758 ~----------~~~~~~~~~~~------------------------------~~~~~~~~~~~l~~~p~~~~~~~~~~vH 797 (951)
. +++..|+.++. ..+...++..|++++|++++.++++|||
T Consensus 83 ~~~~~~~~wl~~GG~~Tl~Syg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fl~~lp~~~~~~~~ifVH 162 (235)
T PHA02239 83 RLSIYDIEWLSRYCIETLNSYGVSTVTLKYSSVEENLRNNYDFIKSELKKLKESDDYRKFKILMVNCRKYYKEDKYIFSH 162 (235)
T ss_pred hcccchHHHHHcCCHHHHHHcCCCCccchhhHHHHHHHHhhhhhhhhhhhcccchhhHHHHHHHHhCcceEEECCEEEEe
Confidence 1 22223333220 0123467888999999999999999999
Q ss_pred cccCcCCC
Q psy14504 798 AGVAKQWT 805 (951)
Q Consensus 798 AG~~p~~~ 805 (951)
||+.|..+
T Consensus 163 AGi~p~~~ 170 (235)
T PHA02239 163 SGGVSWKP 170 (235)
T ss_pred CCCCCCCC
Confidence 99998754
No 30
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.93 E-value=3.9e-25 Score=232.55 Aligned_cols=201 Identities=24% Similarity=0.350 Sum_probs=166.4
Q ss_pred cchHHHHhcCCCCCccccHHHH---HHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEI---RRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i---~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
.||+++.||.+|+++|||+..+ .-+...+......+++|+|||||||||+|+.||+.. ++.+..++.
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~----------~~~f~~~sA 81 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTT----------NAAFEALSA 81 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhh----------CCceEEecc
Confidence 4999999999999999999765 445556677889999999999999999999999988 888887753
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHhc---CCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHH
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEY 185 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~ 185 (951)
..++. +.++.+++++++. +...||||||||++.+ ..++.|++.+|+|.+++|||||.++
T Consensus 82 --v~~gv-------kdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK--------~QQD~lLp~vE~G~iilIGATTENP- 143 (436)
T COG2256 82 --VTSGV-------KDLREIIEEARKNRLLGRRTILFLDEIHRFNK--------AQQDALLPHVENGTIILIGATTENP- 143 (436)
T ss_pred --ccccH-------HHHHHHHHHHHHHHhcCCceEEEEehhhhcCh--------hhhhhhhhhhcCCeEEEEeccCCCC-
Confidence 33222 3688999888633 3478999999999965 4566899999999999999999988
Q ss_pred HHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhh---hcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHH
Q psy14504 186 RQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEV---HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 262 (951)
Q Consensus 186 ~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~---~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 262 (951)
++.++++|+||+..+.+++.+.++...++++.+...+. ...+.++++++..++..+.++. +.+.++++.
T Consensus 144 --sF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~------R~aLN~LE~ 215 (436)
T COG2256 144 --SFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDA------RRALNLLEL 215 (436)
T ss_pred --CeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchH------HHHHHHHHH
Confidence 78999999999999999999999999999874332221 1224589999999999999987 888888888
Q ss_pred HHHHhH
Q psy14504 263 AAAKIK 268 (951)
Q Consensus 263 a~~~~~ 268 (951)
+.....
T Consensus 216 ~~~~~~ 221 (436)
T COG2256 216 AALSAE 221 (436)
T ss_pred HHHhcC
Confidence 776554
No 31
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=9.1e-24 Score=247.13 Aligned_cols=383 Identities=27% Similarity=0.337 Sum_probs=243.9
Q ss_pred HHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcC
Q psy14504 57 IQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQ 136 (951)
Q Consensus 57 ~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~ 136 (951)
.+.+....+.+++++||||+|||++++++|.. . -.. ..++..... .++.|+.+..+..++..+...
T Consensus 10 ~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~--~--------~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~a~~~- 75 (494)
T COG0464 10 FKKLGIEPPKGVLLHGPPGTGKTLLARALANE--G--------AEF-LSINGPEIL--SKYVGESELRLRELFEEAEKL- 75 (494)
T ss_pred HHHhCCCCCCCceeeCCCCCchhHHHHHHHhc--c--------Ccc-cccCcchhh--hhhhhHHHHHHHHHHHHHHHh-
Confidence 34445677889999999999999999999987 1 112 333333333 567889999999999999854
Q ss_pred CCeEEEEecccccccCCCCCC---chhHHhhhhhhcc---CCcEEEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCC
Q psy14504 137 KDIIIFIDELHTMIGTGKVEG---SIDAGNMLKPELS---RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEP 207 (951)
Q Consensus 137 ~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~le---~~~i~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p 207 (951)
.|+++++||++.+.+...... ...+...+...+. ++.+.+++.++.+. .+++++++ ||.. +.+..|
T Consensus 76 ~~~ii~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~~~~v~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~ 150 (494)
T COG0464 76 APSIIFIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLKRGQVIVIGATNRPD-----GLDPAKRRPGRFDREIEVNLP 150 (494)
T ss_pred CCCeEeechhhhcccCccccccchhhHHHHHHHHhcccccCCceEEEeecCCcc-----ccChhHhCccccceeeecCCC
Confidence 468999999999998765511 1123334444442 33477888888887 78988888 8986 999999
Q ss_pred CHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhHHhh-cCCchHHHHHHHHHH
Q psy14504 208 DIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEI-DSKPEIMDKLERRLI 286 (951)
Q Consensus 208 ~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~-~~~~~~l~~l~~~~~ 286 (951)
+...+..|+.......... .+.....++..+.+|. ..+...+...+......+. ...+.
T Consensus 151 ~~~~~~ei~~~~~~~~~~~-----~~~~~~~~a~~~~~~~-----~~~~~~l~~~~~~~~~~r~~~~~~~---------- 210 (494)
T COG0464 151 DEAGRLEILQIHTRLMFLG-----PPGTGKTLAARTVGKS-----GADLGALAKEAALRELRRAIDLVGE---------- 210 (494)
T ss_pred CHHHHHHHHHHHHhcCCCc-----ccccHHHHHHhcCCcc-----HHHHHHHHHHHHHHHHHhhhccCcc----------
Confidence 9999988887665432211 1344555666655554 3334333333322211110 00000
Q ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhhcCchHhhhh
Q psy14504 287 QLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSK 366 (951)
Q Consensus 287 ~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 366 (951)
...
T Consensus 211 -----------------------------------------------------~~~------------------------ 213 (494)
T COG0464 211 -----------------------------------------------------YIG------------------------ 213 (494)
T ss_pred -----------------------------------------------------ccc------------------------
Confidence 000
Q ss_pred hhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCCCcccchHHHHHHHHHHHHhhccCCChH
Q psy14504 367 LKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQD 446 (951)
Q Consensus 367 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~ 446 (951)
....+....++...+. .+.....+.+++.++ .|.+
T Consensus 214 ---~~~~~~~~~l~~~~~~--------~~~~~~~~~v~~~di----------------------------------ggl~ 248 (494)
T COG0464 214 ---VTEDDFEEALKKVLPS--------RGVLFEDEDVTLDDI----------------------------------GGLE 248 (494)
T ss_pred ---ccHHHHHHHHHhcCcc--------cccccCCCCcceehh----------------------------------hcHH
Confidence 0000000000000000 000111122222222 2233
Q ss_pred HHHHHHHHHHHhh----h----cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcc
Q psy14504 447 EAISAVSNAIRRS----R----SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 518 (951)
Q Consensus 447 ~~~~~l~~~~~~~----~----~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 518 (951)
.++..+...+... . .++ ++...+||+||||||||++|+++|..+ +.+|+.++++++.++
T Consensus 249 ~~k~~l~e~v~~~~~~~e~~~~~~~----~~~~giLl~GpPGtGKT~lAkava~~~---~~~fi~v~~~~l~sk------ 315 (494)
T COG0464 249 EAKEELKEAIETPLKRPELFRKLGL----RPPKGVLLYGPPGTGKTLLAKAVALES---RSRFISVKGSELLSK------ 315 (494)
T ss_pred HHHHHHHHHHHhHhhChHHHHhcCC----CCCCeeEEECCCCCCHHHHHHHHHhhC---CCeEEEeeCHHHhcc------
Confidence 3333333333211 1 122 223369999999999999999999987 789999999988775
Q ss_pred cCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeEeecCCeE
Q psy14504 519 IGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRNTI 585 (951)
Q Consensus 519 ~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~i 585 (951)
|+|.++. +.++..++...+|||||||+|++. ..+.+.|+..|+.-. ...+++
T Consensus 316 ------~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e---------~~~~v~ 380 (494)
T COG0464 316 ------WVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIE---------KAEGVL 380 (494)
T ss_pred ------ccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCC---------ccCceE
Confidence 8888776 667777788889999999999864 268899999997411 345678
Q ss_pred EEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 586 IVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 586 iI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
+|.|||.+.. ++|+++. |||.++.|++++.++..+|+...+.+
T Consensus 381 vi~aTN~p~~------------------------ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~ 425 (494)
T COG0464 381 VIAATNRPDD------------------------LDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRD 425 (494)
T ss_pred EEecCCCccc------------------------cCHhhcccCccceEeecCCCCHHHHHHHHHHHhcc
Confidence 8999997553 4566666 99999999999999999997776653
No 32
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=6.8e-25 Score=226.79 Aligned_cols=201 Identities=23% Similarity=0.304 Sum_probs=168.2
Q ss_pred cCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
--+++++=|.++.++.+...+. -.+|.+||||||||||||.||+|+|++. ++.|+.+
T Consensus 147 dvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T----------~AtFIrv 216 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQT----------DATFIRV 216 (406)
T ss_pred CCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CceEEEe
Confidence 3378888899988888887653 3667899999999999999999999988 9999999
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC---CCchhHHhhhhhhc-------cCCcEEE
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV---EGSIDAGNMLKPEL-------SRGELHC 176 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~---~~~~~~~~~L~~~l-------e~~~i~v 176 (951)
..+.++ .+|+|+....++.+|.-|+. +.|||+||||||.+...+.. ++..+++..++++| .++.|.|
T Consensus 217 vgSElV--qKYiGEGaRlVRelF~lAre-kaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKV 293 (406)
T COG1222 217 VGSELV--QKYIGEGARLVRELFELARE-KAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKV 293 (406)
T ss_pred ccHHHH--HHHhccchHHHHHHHHHHhh-cCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEE
Confidence 999999 78999999999999999984 56999999999999876542 44567888888877 3689999
Q ss_pred EEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCc
Q psy14504 177 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 253 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 253 (951)
|+|||+++ -+||||+| ||++ |+||.|+.+.|.+||+-...+.....+++ ++.++..+.++. +
T Consensus 294 I~ATNR~D-----~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~~dvd-----~e~la~~~~g~s-----G 358 (406)
T COG1222 294 IMATNRPD-----ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLADDVD-----LELLARLTEGFS-----G 358 (406)
T ss_pred EEecCCcc-----ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCccCcC-----HHHHHHhcCCCc-----h
Confidence 99999999 89999999 9997 99999999999999998888765444443 466777766654 7
Q ss_pred hhHHHHHHHHHHHhH
Q psy14504 254 DKAIDLIDEAAAKIK 268 (951)
Q Consensus 254 ~~a~~ll~~a~~~~~ 268 (951)
+++..++.+|...+.
T Consensus 359 AdlkaictEAGm~Ai 373 (406)
T COG1222 359 ADLKAICTEAGMFAI 373 (406)
T ss_pred HHHHHHHHHHhHHHH
Confidence 888888888865543
No 33
>PRK09968 serine/threonine-specific protein phosphatase 2; Provisional
Probab=99.92 E-value=2.6e-25 Score=229.18 Aligned_cols=199 Identities=23% Similarity=0.289 Sum_probs=135.4
Q ss_pred HHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHHHHH
Q psy14504 674 ISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVL 753 (951)
Q Consensus 674 L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l~~~ 753 (951)
+....+.+.+.++|||||+++|+++++.+.|.+..|.++++||++||||.+.+|++++.+ .++.+|+||||.|+++++
T Consensus 9 ~~~~~~~ri~visDiHg~~~~l~~~l~~~~~~~~~d~l~~lGD~vdrG~~~~~~l~~l~~--~~~~~v~GNHE~~~~~~~ 86 (218)
T PRK09968 9 INAHHYRHIWVVGDIHGEYQLLQSRLHQLSFCPETDLLISVGDNIDRGPESLNVLRLLNQ--PWFISVKGNHEAMALDAF 86 (218)
T ss_pred ccCCCCCeEEEEEeccCCHHHHHHHHHhcCCCCCCCEEEECCCCcCCCcCHHHHHHHHhh--CCcEEEECchHHHHHHHH
Confidence 334455677889999999999999999999887889999999999999999999999874 468899999999999987
Q ss_pred hhcccCC----ccccHHHhhCC--CCHHHHHHHHhcCCceEEe----CCEEEEecccCcCCCHHHHHHHhHHHHHHhhcc
Q psy14504 754 ININKKS----KLDTFDDILDA--PDKKKLVSWLRTQPLAIYY----KKYLMIHAGVAKQWTAQQTIKLSHQVEKILRTS 823 (951)
Q Consensus 754 ~~~~~~~----~~~~~~~~~~~--~~~~~~~~~l~~~p~~~~~----~~~~~vHAG~~p~~~~~~~~~~~~~~~~~l~~~ 823 (951)
....... +......+... .....++.||++||++++. .+++|||||++..+. .+....
T Consensus 87 ~~~~~~~~~~~gg~~~~~l~~~~~~~~~~~~~~L~~LP~~~~~~~~g~~~~~vHAg~p~~~~-----~~~~~~------- 154 (218)
T PRK09968 87 ETGDGNMWLASGGDWFFDLNDSEQQEATDLLLKFHHLPHIIEITNDNIKYVIAHADYPGDEY-----DFGKEI------- 154 (218)
T ss_pred hcCChhHHHHccCHHHhcCCHHHHHHHHHHHHHHhcCCeEEEEeeCCCcEEEEeCCCCCchh-----hhcccc-------
Confidence 5322110 01111111100 0123457799999999874 369999999843210 000000
Q ss_pred cHHhHHHHhcCCCCCCCCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCCCCCC
Q psy14504 824 YWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTID 903 (951)
Q Consensus 824 ~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~ 903 (951)
...+..|.+. ++. +...+|+..+ .+.
T Consensus 155 ----------~~~~~~w~r~----------------------~~~-------------------~~~~~~~~~~---~~~ 180 (218)
T PRK09968 155 ----------AESELLWPVD----------------------RVQ-------------------KSLNGELQQI---NGA 180 (218)
T ss_pred ----------chhhceeCcH----------------------HHh-------------------hCcccccccc---CCC
Confidence 0011123211 110 0112232211 134
Q ss_pred ceEEEccCCCCCcccCCCeEEcccccccCCeEEEEEe
Q psy14504 904 ITVLFGHWSTLGLIMKPNIICLDTGCVWGNKLTALCL 940 (951)
Q Consensus 904 ~~vv~GH~~~~~~~~~~~~~~lDtG~v~gg~Ltal~l 940 (951)
..||||||+...+...++.++|||||+|||+|||+++
T Consensus 181 ~~vv~GHTh~~~~~~~~~~i~IDtGs~~gG~Lt~~~~ 217 (218)
T PRK09968 181 DYFIFGHMMFDNIQTFANQIYIDTGSPKSGRLSFYKI 217 (218)
T ss_pred CEEEECCCCcCcceeECCEEEEECCCCCCCceeEEec
Confidence 6799999999988888899999999999999999986
No 34
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=6.5e-25 Score=222.19 Aligned_cols=275 Identities=23% Similarity=0.376 Sum_probs=206.5
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCC------CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14504 430 KLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLS------DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 503 (951)
Q Consensus 430 ~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~------~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~ 503 (951)
...++++.|+++||||+.|++.++-++..+...+. +-.-..+++||.||+|||||.||+.||+.+ ..||..
T Consensus 51 tP~eik~~Ld~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~L---nVPFai 127 (408)
T COG1219 51 TPKEIKAHLDEYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKIL---NVPFAI 127 (408)
T ss_pred ChHHHHHHhhhheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHh---CCCeee
Confidence 35678899999999999999987766643322111 112233589999999999999999999999 889999
Q ss_pred eccccccchhchhcccCCCCCCccccccchhHHHHH-------hCCCeEEEEccccccCH--------------HHHHHH
Q psy14504 504 IDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKANS--------------DVFNIL 562 (951)
Q Consensus 504 ~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~iDEid~~~~--------------~~~~~L 562 (951)
.|+..+++ +||+|++..+.+...+. ++..+|+||||||++++ .+|++|
T Consensus 128 ADATtLTE-----------AGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQAL 196 (408)
T COG1219 128 ADATTLTE-----------AGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQAL 196 (408)
T ss_pred ccccchhh-----------ccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHH
Confidence 99988876 58999999888877764 45579999999998763 799999
Q ss_pred HHHhhcceee---cCCCeE--------eecCCeEEEEecCCC-chhhhh-hc-------cc---c------HHHHHHHH-
Q psy14504 563 LQILDDGRLT---DNRGRT--------INFRNTIIVMTSNLG-SDKIKE-ME-------KG---D------KEIIKLAV- 612 (951)
Q Consensus 563 l~~le~g~~~---~~~g~~--------~~~~~~iiI~ttn~~-~~~~~~-~~-------~~---~------~~~~~~~~- 612 (951)
|+++| |.+. ...|+. ++.+|.+||+...+. .+.+.. .. +. + ...+-..+
T Consensus 197 LKiiE-GTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~ve 275 (408)
T COG1219 197 LKIIE-GTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVE 275 (408)
T ss_pred HHHHc-CceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcC
Confidence 99999 4443 334554 555666666655442 222221 11 11 0 11111212
Q ss_pred -HHHHHhccChhHhhccCcEEEecCCChhhHHHHHH----HHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccc
Q psy14504 613 -MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARD 687 (951)
Q Consensus 613 -~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~d 687 (951)
.+.++..+.|+|++|++.+..+.+|+++++.+|+. ..+++++..+...++.+.++++|+..+++....+..|+|.
T Consensus 276 peDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARG 355 (408)
T COG1219 276 PEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARG 355 (408)
T ss_pred hHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhH
Confidence 25667788999999999999999999999999998 5667777778888999999999999999999999999999
Q ss_pred cccchHHHHHHHHhhcccCC----ccceeecccccCCcc
Q psy14504 688 VHGCKKSLSILLKKIHKKSP----EANFIFLGDLINKGP 722 (951)
Q Consensus 688 lhg~~~~l~~~l~~~~~~~~----~~~li~~gd~~~~g~ 722 (951)
+++. ++.++-.+.|+-| ...+++..+.++...
T Consensus 356 LRsI---~E~~lld~MfelPs~~~v~~v~I~~~~v~~~~ 391 (408)
T COG1219 356 LRSI---IEELLLDVMFELPSLEDVEKVVITEEVVDGNA 391 (408)
T ss_pred HHHH---HHHHHHHHHhhCCCCCCceEEEEeHHHhCCCC
Confidence 9999 8888888888654 234556666665443
No 35
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.92 E-value=5.6e-24 Score=209.18 Aligned_cols=189 Identities=25% Similarity=0.350 Sum_probs=153.6
Q ss_pred HHHhcCCCCCccccHHHHHHHH---HHHHc------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 36 EKARLGKLDPVIGRDDEIRRAI---QVLQR------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 36 e~~rp~~l~~lvG~~~~i~~l~---~~l~~------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
+..+.-+|+++|||+...+... .+|.. =.+.|+|||||||||||++|+++|++. +.+++.+
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~----------kvp~l~v 182 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA----------KVPLLLV 182 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc----------CCceEEe
Confidence 4456669999999998765543 34442 346899999999999999999999998 8899999
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC----CchhHHhhhhhhc----cCCcEEEEE
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE----GSIDAGNMLKPEL----SRGELHCIG 178 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~----~~~~~~~~L~~~l----e~~~i~vI~ 178 (951)
....++ +.++|+...+++.+++.|++. .|||+||||+|.+.-++..+ .-.++.|+|+..| ++..++.|+
T Consensus 183 kat~li--GehVGdgar~Ihely~rA~~~-aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIa 259 (368)
T COG1223 183 KATELI--GEHVGDGARRIHELYERARKA-APCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIA 259 (368)
T ss_pred chHHHH--HHHhhhHHHHHHHHHHHHHhc-CCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEe
Confidence 998988 789999999999999999854 59999999999997655421 2345778888777 456799999
Q ss_pred eecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 179 ATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
+||+++ .+|+++++||.. |+|..|+.+||..|++..++.++. .+... ++.++..+.++.
T Consensus 260 aTN~p~-----~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Pl----pv~~~-~~~~~~~t~g~S 319 (368)
T COG1223 260 ATNRPE-----LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPL----PVDAD-LRYLAAKTKGMS 319 (368)
T ss_pred ecCChh-----hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCC----ccccC-HHHHHHHhCCCC
Confidence 999999 899999999986 999999999999999999987653 22222 566677666654
No 36
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.91 E-value=1.9e-24 Score=212.85 Aligned_cols=152 Identities=49% Similarity=0.840 Sum_probs=131.0
Q ss_pred CCceEEEEeCCCCCcHHHHHHHHHHHhc-cCCCceEEeccccccc----hhchhcccCCCCCCccccccchhHHHHHhCC
Q psy14504 468 RPYGSFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDMSEFIE----KHSISRLIGAPPGYIGYEEGGYLTEIVRRKP 542 (951)
Q Consensus 468 ~p~~~~Ll~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~~~~~~----~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~ 542 (951)
+|..++||+||+|||||++|++||+.++ +...+++.+||++|.. .+.+..++|.+++|++..+.
T Consensus 1 ~p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~----------- 69 (171)
T PF07724_consen 1 RPKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEG----------- 69 (171)
T ss_dssp S-SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHH-----------
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccch-----------
Confidence 4678999999999999999999999999 7888999999999999 77778888888887775543
Q ss_pred CeEEEEccccccCH-----------HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhcc---ccHHHH
Q psy14504 543 YSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK---GDKEII 608 (951)
Q Consensus 543 ~~vl~iDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~---~~~~~~ 608 (951)
+|||||||||+++ .+|+.||++||+|.+++..|+.+++++++||+|||++......... ......
T Consensus 70 -gVVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~~~~~~~~~~~~~~~~~~ 148 (171)
T PF07724_consen 70 -GVVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGAEEIIDASRSGEAIEQEQ 148 (171)
T ss_dssp -TEEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSSTHHHHHCHHHCTCCHHHH
T ss_pred -hhhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccccchhhhhhccccccHHHH
Confidence 3999999999999 9999999999999999999999999999999999999877655322 234555
Q ss_pred HHHHHHHHHhccChhHhhccCcE
Q psy14504 609 KLAVMNEVKIYFRPEFINRIDDI 631 (951)
Q Consensus 609 ~~~~~~~~~~~f~p~l~~R~~~~ 631 (951)
.....+.+...|+|||++|||.+
T Consensus 149 ~~~~~~~~~~~f~pEf~~Ri~~i 171 (171)
T PF07724_consen 149 EEQIRDLVEYGFRPEFLGRIDVI 171 (171)
T ss_dssp CHHHHHHHHHTS-HHHHTTSSEE
T ss_pred HHHHHHHHHcCCCHHHHccCCcC
Confidence 66777889999999999999853
No 37
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.91 E-value=1e-23 Score=228.15 Aligned_cols=250 Identities=23% Similarity=0.389 Sum_probs=187.4
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhh--hcCCCCCC---CCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14504 432 LNIENLLCKRVVGQDEAISAVSNAIRRS--RSGLSDAK---RPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 506 (951)
Q Consensus 432 ~~l~~~l~~~v~Gq~~~~~~l~~~~~~~--~~~~~~~~---~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 506 (951)
.++.+.|++.|+||+.|++.+..++... +.++..+. .+..++||+||||||||++|++||+.+ +.+|+.+|+
T Consensus 7 ~~I~~~Ld~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l---~~~fi~vD~ 83 (443)
T PRK05201 7 REIVSELDKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (443)
T ss_pred HHHHHHhccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh---CChheeecc
Confidence 4667889999999999999999998652 22222111 112589999999999999999999998 789999999
Q ss_pred ccccchh----c------------------------------------hhcccCCC------------------------
Q psy14504 507 SEFIEKH----S------------------------------------ISRLIGAP------------------------ 522 (951)
Q Consensus 507 ~~~~~~~----~------------------------------------~~~l~g~~------------------------ 522 (951)
++|.... + +..+.+..
T Consensus 84 t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l 163 (443)
T PRK05201 84 TKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKL 163 (443)
T ss_pred hhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHH
Confidence 8776420 0 00111100
Q ss_pred ---------------C--C----Cc--cccc------------------------------------------cchhHHH
Q psy14504 523 ---------------P--G----YI--GYEE------------------------------------------GGYLTEI 537 (951)
Q Consensus 523 ---------------~--~----~~--g~~~------------------------------------------~~~l~~~ 537 (951)
. + +. |... ......+
T Consensus 164 ~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~a 243 (443)
T PRK05201 164 REGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEA 243 (443)
T ss_pred HcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHH
Confidence 0 0 00 0000 0001122
Q ss_pred HHh-CCCeEEEEccccccCH------------HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhcccc
Q psy14504 538 VRR-KPYSLILLDEIEKANS------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGD 604 (951)
Q Consensus 538 ~~~-~~~~vl~iDEid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~ 604 (951)
+.. ...+|||||||||+.. .||..||+++|.-.+.. .-..++..+.+||++..+.....
T Consensus 244 i~~ae~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~-k~~~i~T~~ILFI~~GAF~~~kp------- 315 (443)
T PRK05201 244 IERVEQNGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVST-KYGMVKTDHILFIASGAFHVSKP------- 315 (443)
T ss_pred HHHHHcCCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeee-cceeEECCceeEEecCCcCCCCh-------
Confidence 333 3679999999999762 59999999999544443 33578999999999988754211
Q ss_pred HHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHH----HHHHHHHHHHHhcCCccccchHHHHHHHHhccc
Q psy14504 605 KEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIGFD 680 (951)
Q Consensus 605 ~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~ 680 (951)
.-+.|||++||+.++.+.+|+.+++.+|+. ..++++...++..|+.+.|++++++.+++..+.
T Consensus 316 -------------~DlIPEl~GR~Pi~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 316 -------------SDLIPELQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred -------------hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 125799999999999999999999999994 688899999999999999999999999998876
Q ss_pred -----ccccccccccchHHHHHHHHhhcccCCc
Q psy14504 681 -----LIYGARDVHGCKKSLSILLKKIHKKSPE 708 (951)
Q Consensus 681 -----~~~g~~dlhg~~~~l~~~l~~~~~~~~~ 708 (951)
.+.|+|.||.. ++++|..+.|+.|.
T Consensus 383 ~N~~~~~iGAR~LrtI---~E~~L~d~~Fe~p~ 412 (443)
T PRK05201 383 VNEKTENIGARRLHTV---MEKLLEDISFEAPD 412 (443)
T ss_pred hcccccccchhhHHHH---HHHHHHHHhccCCC
Confidence 68999999999 99999999998764
No 38
>cd07424 MPP_PrpA_PrpB PrpA and PrpB, metallophosphatase domain. PrpA and PrpB are bacterial type I serine/threonine and tyrosine phosphatases thought to modulate the expression of proteins that protect the cell upon accumulation of misfolded proteins in the periplasm. The PPP (phosphoprotein phosphatase) family, to which PrpA and PrpB belong, is one of two known protein phosphatase families specific for serine and threonine. This family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all
Probab=99.91 E-value=2.5e-24 Score=221.49 Aligned_cols=194 Identities=26% Similarity=0.295 Sum_probs=130.4
Q ss_pred cccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHHHHHhhccc---
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININK--- 758 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~--- 758 (951)
.+.++||||++..++++++.+++.+..|.++++||++|+|+.+.++++++.+ .++.+|+||||.+++.++.....
T Consensus 3 i~~isDiHg~~~~l~~~l~~~~~~~~~d~~~~~GD~v~~g~~~~~~~~~l~~--~~~~~v~GNhe~~~~~~~~~~~~~~~ 80 (207)
T cd07424 3 DFVVGDIHGHYSLLQKALDAVGFDPARDRLISVGDLIDRGPESLACLELLLE--PWFHAVRGNHEQMAIDALRAEPLDAV 80 (207)
T ss_pred EEEEECCCCCHHHHHHHHHHcCCCCCCCEEEEeCCcccCCCCHHHHHHHHhc--CCEEEeECCChHHHHhHhhCCCcchh
Confidence 4678999999999999999998866679999999999999999999999975 45889999999999887744210
Q ss_pred ---CCccccHHHhhCCCCHHHHHHHHhcCCceEEeC----CEEEEecccCcCCCHHHHHHHhHHHHHHhhcccHHhHHHH
Q psy14504 759 ---KSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK----KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFK 831 (951)
Q Consensus 759 ---~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~----~~~~vHAG~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 831 (951)
..+.....+.+.....+.+.+||++||++++.+ ++++||||+++....... .. ..+. .
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~lP~~~~i~~~g~~~~~vHag~~~~~~~~~~---~~---~~~~--~------- 145 (207)
T cd07424 81 RWLANGGEWFLDLPDEELRRWLALKLEQLPLAIEVETEGGKVGIVHADYPSDDWSDGV---GA---VTLR--P------- 145 (207)
T ss_pred HHHhcCCeehhhcChHHHHHHHHHHHHhCCeEEEEEeCCCEEEEECCCCCcchhhhhh---hc---cccC--c-------
Confidence 001111111111112456889999999998743 589999999764211100 00 0000 0
Q ss_pred hcCCCCCCCCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCCCCCCceEEEccC
Q psy14504 832 LYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHW 911 (951)
Q Consensus 832 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~vv~GH~ 911 (951)
.......|.+.. +.. ++ .....+...||||||
T Consensus 146 -~~~~~~~w~~~~----------------------~~~-----------------------~~--~~~~~~~~~iV~GHT 177 (207)
T cd07424 146 -EDIEELLWSRTR----------------------IQK-----------------------AQ--TQPIKGVDAVVHGHT 177 (207)
T ss_pred -ccceeeeeccch----------------------hhh-----------------------cC--ccccCCCCEEEECCC
Confidence 000111222110 000 00 000112357999999
Q ss_pred CCCCcccCCCeEEcccccccCCeEEEEEe
Q psy14504 912 STLGLIMKPNIICLDTGCVWGNKLTALCL 940 (951)
Q Consensus 912 ~~~~~~~~~~~~~lDtG~v~gg~Ltal~l 940 (951)
++..+...++.++||||||+||+|||+++
T Consensus 178 h~~~~~~~~~~i~ID~Gsv~gg~Lt~~~~ 206 (207)
T cd07424 178 PVKRPLRLGNVLYIDTGAVFDGNLTLLDL 206 (207)
T ss_pred CCCcceEECCEEEEECCCCCCCeEEEEec
Confidence 99998888899999999999999999986
No 39
>KOG0730|consensus
Probab=99.90 E-value=2.3e-23 Score=231.30 Aligned_cols=203 Identities=25% Similarity=0.336 Sum_probs=166.5
Q ss_pred cCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
.-+++++=|.++..+.|.+.+. -..+++||||||||||||++|+++|++. +++++.+
T Consensus 430 ~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~----------~~nFlsv 499 (693)
T KOG0730|consen 430 NVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEA----------GMNFLSV 499 (693)
T ss_pred CCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhh----------cCCeeec
Confidence 3467777778877766665332 3667899999999999999999999998 8999999
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCc---hhHHhhhhhhcc----CCcEEEEEe
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPELS----RGELHCIGA 179 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~le----~~~i~vI~a 179 (951)
....+. ++|+|+.|..++.+|..|+.. .|+|+|+||||.+..+++++.+ ..+.+.|+..|. ..+|.|||+
T Consensus 500 kgpEL~--sk~vGeSEr~ir~iF~kAR~~-aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~~k~V~ViAA 576 (693)
T KOG0730|consen 500 KGPELF--SKYVGESERAIREVFRKARQV-APCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEALKNVLVIAA 576 (693)
T ss_pred cCHHHH--HHhcCchHHHHHHHHHHHhhc-CCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccccCcEEEEec
Confidence 998888 889999999999999999954 5899999999999988864433 234455555553 468999999
Q ss_pred ecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhH
Q psy14504 180 TTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKA 256 (951)
Q Consensus 180 t~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a 256 (951)
||+++ .+|++++| ||+. |+|+.|+.+.|.+||+...++.+....+ .+..++..+.+|. ++++
T Consensus 577 TNRpd-----~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~~~v-----dl~~La~~T~g~S-----GAel 641 (693)
T KOG0730|consen 577 TNRPD-----MIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFSEDV-----DLEELAQATEGYS-----GAEI 641 (693)
T ss_pred cCChh-----hcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCCccc-----cHHHHHHHhccCC-----hHHH
Confidence 99999 89999999 9997 9999999999999999988865433322 4677888877776 7899
Q ss_pred HHHHHHHHHHhHHh
Q psy14504 257 IDLIDEAAAKIKIE 270 (951)
Q Consensus 257 ~~ll~~a~~~~~~~ 270 (951)
..++++|+..+..+
T Consensus 642 ~~lCq~A~~~a~~e 655 (693)
T KOG0730|consen 642 VAVCQEAALLALRE 655 (693)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998766543
No 40
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.90 E-value=4.6e-23 Score=223.02 Aligned_cols=249 Identities=25% Similarity=0.398 Sum_probs=186.3
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhh--hcCC----CCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14504 432 LNIENLLCKRVVGQDEAISAVSNAIRRS--RSGL----SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 505 (951)
Q Consensus 432 ~~l~~~l~~~v~Gq~~~~~~l~~~~~~~--~~~~----~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 505 (951)
.++...|.+.|+||++|++.+..++... +..+ .....| .++||+||||||||++|++||+.+ +.+|+.++
T Consensus 4 ~~I~~~Ld~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p-~~ILLiGppG~GKT~lAraLA~~l---~~~fi~vd 79 (441)
T TIGR00390 4 REIVAELDKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTP-KNILMIGPTGVGKTEIARRLAKLA---NAPFIKVE 79 (441)
T ss_pred HHHHHHHhhhccCHHHHHHHHHHHHHhhhhhhccccccccccCC-ceEEEECCCCCCHHHHHHHHHHHh---CCeEEEee
Confidence 4677889999999999999999988753 2222 112223 489999999999999999999999 78999999
Q ss_pred cccccch-----hc---h--------------------------------hcccCCCCCCcc------------------
Q psy14504 506 MSEFIEK-----HS---I--------------------------------SRLIGAPPGYIG------------------ 527 (951)
Q Consensus 506 ~~~~~~~-----~~---~--------------------------------~~l~g~~~~~~g------------------ 527 (951)
++.+... .. . ..++.......|
T Consensus 80 at~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~ 159 (441)
T TIGR00390 80 ATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKK 159 (441)
T ss_pred cceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHH
Confidence 8766531 00 0 001100000000
Q ss_pred ------------------------------ccc------------------------------------------cchhH
Q psy14504 528 ------------------------------YEE------------------------------------------GGYLT 535 (951)
Q Consensus 528 ------------------------------~~~------------------------------------------~~~l~ 535 (951)
... .....
T Consensus 160 l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~ 239 (441)
T TIGR00390 160 LREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQ 239 (441)
T ss_pred HhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHH
Confidence 000 00001
Q ss_pred HHHH-hCCCeEEEEccccccCH------------HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhcc
Q psy14504 536 EIVR-RKPYSLILLDEIEKANS------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 602 (951)
Q Consensus 536 ~~~~-~~~~~vl~iDEid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~ 602 (951)
++++ ....+|||||||||+.. .||+.||+++|...+.. ....++..+.+||++..+.....
T Consensus 240 ~a~~~~e~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~-k~~~v~T~~ILFI~~GAF~~~kp----- 313 (441)
T TIGR00390 240 EAIDAVEQSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNT-KYGMVKTDHILFIAAGAFQLAKP----- 313 (441)
T ss_pred HHHHHHHcCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeee-cceeEECCceeEEecCCcCCCCh-----
Confidence 1122 25679999999999763 58999999999544443 33578999999999988754211
Q ss_pred ccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHH----HHHHHHHHHHHhcCCccccchHHHHHHHHhc
Q psy14504 603 GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 603 ~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
.-+.|||++||+.++.+.+|+.+++.+|+. ..++++...++..++.+.|++++++.+++..
T Consensus 314 ---------------~DlIPEl~GR~Pi~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A 378 (441)
T TIGR00390 314 ---------------SDLIPELQGRFPIRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELA 378 (441)
T ss_pred ---------------hhccHHHhCccceEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHH
Confidence 126799999999999999999999999994 6788899999999999999999999999987
Q ss_pred cc-----ccccccccccchHHHHHHHHhhcccCCc
Q psy14504 679 FD-----LIYGARDVHGCKKSLSILLKKIHKKSPE 708 (951)
Q Consensus 679 ~~-----~~~g~~dlhg~~~~l~~~l~~~~~~~~~ 708 (951)
+. .+.|+|.||.. ++++|..+.|+.|.
T Consensus 379 ~~~N~~~~~iGAR~Lrti---lE~~l~d~~fe~p~ 410 (441)
T TIGR00390 379 YNVNEKTENIGARRLHTV---LERLLEDISFEAPD 410 (441)
T ss_pred HHhcccccccchhhHHHH---HHHHHHHHHhcCCC
Confidence 76 78999999999 99999999998764
No 41
>KOG0738|consensus
Probab=99.90 E-value=7.2e-23 Score=212.67 Aligned_cols=210 Identities=22% Similarity=0.325 Sum_probs=163.3
Q ss_pred hhcchHHHHhcCCCCCccccHHHHHHHHHHHH------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCC
Q psy14504 30 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS 97 (951)
Q Consensus 30 ~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~ 97 (951)
+-+++...-.--+.+++.|..+..+-|...+- ++++.++|++||||||||.||+++|.++
T Consensus 198 lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc-------- 269 (491)
T KOG0738|consen 198 LERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC-------- 269 (491)
T ss_pred HHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh--------
Confidence 33344433334478899999988777766432 5778999999999999999999999999
Q ss_pred cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhc--------
Q psy14504 98 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL-------- 169 (951)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l-------- 169 (951)
+..++-+..+.+. ++|.|++++.++-+|+-|+ ...|+++||||||.|++.++.++..++...++..|
T Consensus 270 --~tTFFNVSsstlt--SKwRGeSEKlvRlLFemAR-fyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~ 344 (491)
T KOG0738|consen 270 --GTTFFNVSSSTLT--SKWRGESEKLVRLLFEMAR-FYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ 344 (491)
T ss_pred --cCeEEEechhhhh--hhhccchHHHHHHHHHHHH-HhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc
Confidence 8888877777777 8999999999999998887 55699999999999999887776666655555443
Q ss_pred ---cCCc-EEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhh
Q psy14504 170 ---SRGE-LHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSY 244 (951)
Q Consensus 170 ---e~~~-i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~ 244 (951)
++.+ |.|+++||.+- .+|.+|+|||.. |+|+.|+.+.|..+++..+...+.. ++-.+..+++.+.
T Consensus 345 ~t~e~~k~VmVLAATN~PW-----diDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-----~~~~~~~lae~~e 414 (491)
T KOG0738|consen 345 GTLENSKVVMVLAATNFPW-----DIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELD-----DPVNLEDLAERSE 414 (491)
T ss_pred cccccceeEEEEeccCCCc-----chHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCC-----CCccHHHHHHHhc
Confidence 2223 55666666665 899999999996 9999999999999999888754332 2344677888888
Q ss_pred hhcccCCCchhHHHHHHHHHHHh
Q psy14504 245 RYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 245 ~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
+|. +.++..++..|+.+.
T Consensus 415 GyS-----GaDI~nvCreAsm~~ 432 (491)
T KOG0738|consen 415 GYS-----GADITNVCREASMMA 432 (491)
T ss_pred CCC-----hHHHHHHHHHHHHHH
Confidence 876 677888888776554
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.89 E-value=4.8e-23 Score=204.16 Aligned_cols=190 Identities=24% Similarity=0.327 Sum_probs=134.0
Q ss_pred hcchHHHHhcCCCCCccccHHHHHHHHHHHH-----cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 31 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ-----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 31 ~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~-----~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
-.++.+.+||.+|+++|||+..+..+.-++. .....|+||+||||+||||||+.+|+++ +.++..
T Consensus 11 ~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~----------~~~~~~ 80 (233)
T PF05496_consen 11 EAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANEL----------GVNFKI 80 (233)
T ss_dssp -S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHC----------T--EEE
T ss_pred chhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhcc----------CCCeEe
Confidence 3578999999999999999999888765544 2345789999999999999999999998 777776
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCc------------
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE------------ 173 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~------------ 173 (951)
++...+. ..+ .+..++..+. .+.||||||||+|.+ ..++.|.+.||++.
T Consensus 81 ~sg~~i~----k~~----dl~~il~~l~---~~~ILFIDEIHRlnk--------~~qe~LlpamEd~~idiiiG~g~~ar 141 (233)
T PF05496_consen 81 TSGPAIE----KAG----DLAAILTNLK---EGDILFIDEIHRLNK--------AQQEILLPAMEDGKIDIIIGKGPNAR 141 (233)
T ss_dssp EECCC------SCH----HHHHHHHT-----TT-EEEECTCCC--H--------HHHHHHHHHHHCSEEEEEBSSSSS-B
T ss_pred ccchhhh----hHH----HHHHHHHhcC---CCcEEEEechhhccH--------HHHHHHHHHhccCeEEEEeccccccc
Confidence 6543221 112 3445555543 355999999999954 66778999997653
Q ss_pred --------EEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhh
Q psy14504 174 --------LHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSY 244 (951)
Q Consensus 174 --------i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~ 244 (951)
+.+|+|||... .+.++|++||.. ..+..++.+|...|++.-... .++.+++++...++..|.
T Consensus 142 ~~~~~l~~FTligATTr~g-----~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~----l~i~i~~~~~~~Ia~rsr 212 (233)
T PF05496_consen 142 SIRINLPPFTLIGATTRAG-----LLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARI----LNIEIDEDAAEEIARRSR 212 (233)
T ss_dssp EEEEE----EEEEEESSGC-----CTSHCCCTTSSEEEE----THHHHHHHHHHCCHC----TT-EE-HHHHHHHHHCTT
T ss_pred eeeccCCCceEeeeecccc-----ccchhHHhhcceecchhcCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHhcC
Confidence 56899999998 889999999997 689999999999999866553 578899999999998764
Q ss_pred hhcccCCCchhHHHHHHHHH
Q psy14504 245 RYISDRFMPDKAIDLIDEAA 264 (951)
Q Consensus 245 ~~~~~~~~p~~a~~ll~~a~ 264 (951)
+.|+-|.+++..+.
T Consensus 213 ------GtPRiAnrll~rvr 226 (233)
T PF05496_consen 213 ------GTPRIANRLLRRVR 226 (233)
T ss_dssp ------TSHHHHHHHHHHHC
T ss_pred ------CChHHHHHHHHHHH
Confidence 46899999988764
No 43
>cd00144 MPP_PPP_family phosphoprotein phosphatases of the metallophosphatase superfamily, metallophosphatase domain. The PPP (phosphoprotein phosphatase) family is one of two known protein phosphatase families specific for serine and threonine. This family includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate
Probab=99.89 E-value=1.4e-23 Score=220.37 Aligned_cols=209 Identities=26% Similarity=0.386 Sum_probs=142.1
Q ss_pred ccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcC---CccEEEcCCChHHHHHHHhhcccC
Q psy14504 683 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR---NYAKIVLGNHEIHLLDVLININKK 759 (951)
Q Consensus 683 ~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~---~~~~~v~GNHe~~~l~~~~~~~~~ 759 (951)
|.++||||+++.|.++++++++ .+.+.+|++||++|+|+.+.+|+++++++. .++.+|+||||.+++.+.......
T Consensus 1 ~~igDiHg~~~~l~~~l~~~~~-~~~d~li~lGD~vdrg~~~~~~l~~l~~~~~~~~~~~~l~GNHe~~~~~~~~~~~~~ 79 (225)
T cd00144 1 YVIGDIHGCLDDLLRLLEKIGF-PPNDKLIFLGDYVDRGPDSVEVIDLLLALKILPDNVILLRGNHEDMLLNFLYGFYDE 79 (225)
T ss_pred CEEeCCCCCHHHHHHHHHHhCC-CCCCEEEEECCEeCCCCCcHHHHHHHHHhcCCCCcEEEEccCchhhhhhhhcCCcch
Confidence 4689999999999999999997 467999999999999999999999999884 378999999999998877543221
Q ss_pred Cc----cccHHHhhCCCCHHHHHHHHhcCCceEEeC--CEEEEecccCcCCCHHHHHHHhHHHHHHhhcccHHhHHHHhc
Q psy14504 760 SK----LDTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLY 833 (951)
Q Consensus 760 ~~----~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~--~~~~vHAG~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 833 (951)
.. ...............+..|++++|+++..+ ++++||||++|.+....... ... . -.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~~vHag~~~~~~~~~~~~-------~~~--~-------~~ 143 (225)
T cd00144 80 DEWIGGTLRLLKKLGEDLWEEFNDVFFYLPLAALIETKKVLCVHGGLSPGLPLEEQIK-------EEP--E-------DQ 143 (225)
T ss_pred hhccchhHHHHHhhCHHHHHHHHHHHHhCcHheEeCCCeEEEEeCCCCCccchHHhhh-------cCc--c-------cc
Confidence 10 011122223334577889999999998887 89999999999876432211 000 0 00
Q ss_pred CCCCCCCCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCCCCCCceEEEccCCC
Q psy14504 834 NHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWST 913 (951)
Q Consensus 834 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~vv~GH~~~ 913 (951)
......|.+.. +....... .. ....+...+||..+. +...||+||||+
T Consensus 144 ~~~~~lw~r~~----------------------~~~~~~~~--~~-----~~~~~~~~~~~~~~~---~~~~ii~GHt~~ 191 (225)
T cd00144 144 LPEDLLWSDPL----------------------ELPGGFGS--SR-----RGGGPDAVEWFLKKN---GLKLIVRGHTPV 191 (225)
T ss_pred cceeeeecCCC----------------------CCCCCCcC--CC-----CCCCHHHHHHHHHHC---CCeEEEEcCccc
Confidence 01223343321 11100000 00 000112234543333 467899999999
Q ss_pred CCcc---cCCCeEEccccccc----CCeEEEEEe
Q psy14504 914 LGLI---MKPNIICLDTGCVW----GNKLTALCL 940 (951)
Q Consensus 914 ~~~~---~~~~~~~lDtG~v~----gg~Ltal~l 940 (951)
.+.. ..+++++|||||+| ||+||++++
T Consensus 192 ~~~~~~~~~~~~i~IDtg~~~~~~~~~~l~~~~~ 225 (225)
T cd00144 192 EEGYEFGHDGNLITIDSGCNYCGGGGNKLAALVL 225 (225)
T ss_pred cCccEEcCCCCEEEEecCCcccCCCCccEEEEeC
Confidence 9776 67899999999999 899999863
No 44
>KOG0989|consensus
Probab=99.89 E-value=1.9e-22 Score=204.59 Aligned_cols=204 Identities=21% Similarity=0.265 Sum_probs=166.3
Q ss_pred hhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 30 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 30 ~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
....|+|||||.+|++++||+.++..|...+.++..+|.|||||||||||+.|+++|+++.. +.+..+.+.+.+.+
T Consensus 22 ~~~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~----~~~~~~rvl~lnaS 97 (346)
T KOG0989|consen 22 KHRSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC----EQLFPCRVLELNAS 97 (346)
T ss_pred CccchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC----ccccccchhhhccc
Confidence 45569999999999999999999999999999988899999999999999999999999955 23445666666665
Q ss_pred hhhcCccccccHHHHHHHHHHHHH---------hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEE
Q psy14504 110 LLLAGTKYRGEFEDRLKKILKEIS---------NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIG 178 (951)
Q Consensus 110 ~l~~~~~~~g~~~~~l~~~~~~a~---------~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~ 178 (951)
.... -. -...+++. |.... ......|++|||+|.|. .++++.|+..||+ ..+++|.
T Consensus 98 derG-is---vvr~Kik~-fakl~~~~~~~~~~~~~~fKiiIlDEcdsmt--------sdaq~aLrr~mE~~s~~trFiL 164 (346)
T KOG0989|consen 98 DERG-IS---VVREKIKN-FAKLTVLLKRSDGYPCPPFKIIILDECDSMT--------SDAQAALRRTMEDFSRTTRFIL 164 (346)
T ss_pred cccc-cc---chhhhhcC-HHHHhhccccccCCCCCcceEEEEechhhhh--------HHHHHHHHHHHhccccceEEEE
Confidence 5431 11 11112221 11111 11223799999999994 4888999999985 6789999
Q ss_pred eecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHH
Q psy14504 179 ATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAID 258 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ 258 (951)
.||..+ .+.+.+.|||+.+.|++...+.....|+.++.+ +++.+++++++.++..+++.+ ++|+.
T Consensus 165 Icnyls-----rii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~----E~v~~d~~al~~I~~~S~GdL------R~Ait 229 (346)
T KOG0989|consen 165 ICNYLS-----RIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASK----EGVDIDDDALKLIAKISDGDL------RRAIT 229 (346)
T ss_pred EcCChh-----hCChHHHhhHHHhcCCCcchHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCcH------HHHHH
Confidence 999998 899999999999999999999999999999884 689999999999999999999 99999
Q ss_pred HHHHHHH
Q psy14504 259 LIDEAAA 265 (951)
Q Consensus 259 ll~~a~~ 265 (951)
.|+.++.
T Consensus 230 ~Lqsls~ 236 (346)
T KOG0989|consen 230 TLQSLSL 236 (346)
T ss_pred HHHHhhc
Confidence 9998765
No 45
>KOG0733|consensus
Probab=99.88 E-value=2.5e-22 Score=219.09 Aligned_cols=181 Identities=25% Similarity=0.372 Sum_probs=146.6
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEE
Q psy14504 62 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 141 (951)
Q Consensus 62 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL 141 (951)
-..+.+|||+||||||||.||+++|++. +.+++++..-.|. .+|+|+++..++.+|..|+ ...|||+
T Consensus 542 i~~PsGvLL~GPPGCGKTLlAKAVANEa----------g~NFisVKGPELl--NkYVGESErAVR~vFqRAR-~saPCVI 608 (802)
T KOG0733|consen 542 IDAPSGVLLCGPPGCGKTLLAKAVANEA----------GANFISVKGPELL--NKYVGESERAVRQVFQRAR-ASAPCVI 608 (802)
T ss_pred CCCCCceEEeCCCCccHHHHHHHHhhhc----------cCceEeecCHHHH--HHHhhhHHHHHHHHHHHhh-cCCCeEE
Confidence 3567899999999999999999999998 8999999988888 7899999999999999999 4569999
Q ss_pred EEecccccccCCCCCCc---hhHHhhhhhhc----cCCcEEEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHH
Q psy14504 142 FIDELHTMIGTGKVEGS---IDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEE 211 (951)
Q Consensus 142 ~iDEid~l~~~~~~~~~---~~~~~~L~~~l----e~~~i~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~e 211 (951)
|+||+|.|++.++.+++ ..+.|.|+..| ++..|.||+|||+++ -+||+++| ||+. ++++.|+.++
T Consensus 609 FFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPD-----iIDpAiLRPGRlDk~LyV~lPn~~e 683 (802)
T KOG0733|consen 609 FFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEERRGVYVIAATNRPD-----IIDPAILRPGRLDKLLYVGLPNAEE 683 (802)
T ss_pred EecchhhcCcccCCCCchhHHHHHHHHHHHhcccccccceEEEeecCCCc-----ccchhhcCCCccCceeeecCCCHHH
Confidence 99999999998875543 44667777666 367899999999999 89999999 9997 9999999999
Q ss_pred HHHHHHHHHHhhhhhcCCCCCh-HHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHh
Q psy14504 212 TISILRGLQKKYEVHHGVEITD-PAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 212 r~~il~~~~~~~~~~~~~~i~~-~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
|..||+.+.+.. ...+++ -.++.++.... -++|.+.+...|+.+|...+
T Consensus 684 R~~ILK~~tkn~----k~pl~~dVdl~eia~~~~---c~gftGADLaaLvreAsi~A 733 (802)
T KOG0733|consen 684 RVAILKTITKNT----KPPLSSDVDLDEIARNTK---CEGFTGADLAALVREASILA 733 (802)
T ss_pred HHHHHHHHhccC----CCCCCcccCHHHHhhccc---ccCCchhhHHHHHHHHHHHH
Confidence 999999998841 222222 23455555432 12344788888888876443
No 46
>KOG0734|consensus
Probab=99.88 E-value=3.9e-22 Score=214.15 Aligned_cols=205 Identities=22% Similarity=0.316 Sum_probs=159.8
Q ss_pred cCCCCCccccHHH---HHHHHHHHH---------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14504 40 LGKLDPVIGRDDE---IRRAIQVLQ---------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 107 (951)
Q Consensus 40 p~~l~~lvG~~~~---i~~l~~~l~---------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 107 (951)
-.+|+++.|.|+. ++.++.+|. .+-+.+|||+||||||||.|||++|.+. +.+++...
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA----------~VPFF~~s 369 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEA----------GVPFFYAS 369 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhccc----------CCCeEecc
Confidence 4479999999865 555566654 3557899999999999999999999988 88888777
Q ss_pred hhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchh---HHhhhhhhc----cCCcEEEEEee
Q psy14504 108 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSID---AGNMLKPEL----SRGELHCIGAT 180 (951)
Q Consensus 108 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~---~~~~L~~~l----e~~~i~vI~at 180 (951)
.+.+. .-++|....+++.+|..|+ ...|||+||||+|.+-..+......- ..|.|+..| .+..|+||++|
T Consensus 370 GSEFd--Em~VGvGArRVRdLF~aAk-~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qNeGiIvigAT 446 (752)
T KOG0734|consen 370 GSEFD--EMFVGVGARRVRDLFAAAK-ARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQNEGIIVIGAT 446 (752)
T ss_pred ccchh--hhhhcccHHHHHHHHHHHH-hcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcCCceEEEecc
Confidence 66655 5688999999999999998 45699999999999977664433222 234444444 35679999999
Q ss_pred cchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHH
Q psy14504 181 TLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAI 257 (951)
Q Consensus 181 ~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~ 257 (951)
|.++ .+|++|.| ||+. |.++.|+..-|.+||+..+.+.....++ + +..+++-+.+| .+.+..
T Consensus 447 Nfpe-----~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~~~V--D---~~iiARGT~GF-----sGAdLa 511 (752)
T KOG0734|consen 447 NFPE-----ALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLDEDV--D---PKIIARGTPGF-----SGADLA 511 (752)
T ss_pred CChh-----hhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCCcccCC--C---HhHhccCCCCC-----chHHHH
Confidence 9999 99999999 9997 9999999999999999888865433333 2 24455555554 488999
Q ss_pred HHHHHHHHHhHHhhc
Q psy14504 258 DLIDEAAAKIKIEID 272 (951)
Q Consensus 258 ~ll~~a~~~~~~~~~ 272 (951)
+++.+|+.++.....
T Consensus 512 NlVNqAAlkAa~dga 526 (752)
T KOG0734|consen 512 NLVNQAALKAAVDGA 526 (752)
T ss_pred HHHHHHHHHHHhcCc
Confidence 999999888776543
No 47
>KOG0745|consensus
Probab=99.87 E-value=2e-21 Score=204.35 Aligned_cols=219 Identities=22% Similarity=0.404 Sum_probs=172.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHH-------HhCCC
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV-------RRKPY 543 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~-------~~~~~ 543 (951)
.++||.||+|+|||.||+.||+.+ ..||...||..++. +||+|++....+...+ .++..
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l---dVPfaIcDcTtLTQ-----------AGYVGeDVEsvi~KLl~~A~~nVekAQq 292 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL---DVPFAICDCTTLTQ-----------AGYVGEDVESVIQKLLQEAEYNVEKAQQ 292 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh---CCCeEEecccchhh-----------cccccccHHHHHHHHHHHccCCHHHHhc
Confidence 379999999999999999999999 88999999999876 5899999887776665 34557
Q ss_pred eEEEEccccccC--------------HHHHHHHHHHhhcceeecC--C---------CeEeecCCeEEEEecCCCc-hh-
Q psy14504 544 SLILLDEIEKAN--------------SDVFNILLQILDDGRLTDN--R---------GRTINFRNTIIVMTSNLGS-DK- 596 (951)
Q Consensus 544 ~vl~iDEid~~~--------------~~~~~~Ll~~le~g~~~~~--~---------g~~~~~~~~iiI~ttn~~~-~~- 596 (951)
+|+||||+|++. ..||..||+++| |.+..- . ...++.++.+||+...+-. +.
T Consensus 293 GIVflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~ 371 (564)
T KOG0745|consen 293 GIVFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKI 371 (564)
T ss_pred CeEEEehhhhhcccCccccccccccchhHHHHHHHHhc-ccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHH
Confidence 999999999875 378999999998 555432 1 2367888888888765421 11
Q ss_pred hhhhc-------c---------------c-cHHHHHH--HH-----HHHHHhccChhHhhccCcEEEecCCChhhHHHHH
Q psy14504 597 IKEME-------K---------------G-DKEIIKL--AV-----MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 646 (951)
Q Consensus 597 ~~~~~-------~---------------~-~~~~~~~--~~-----~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~ 646 (951)
+.+.. + + ......+ .+ .+.+...+.|||++||+.+|+|.+|+++++.+|+
T Consensus 372 I~rR~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VL 451 (564)
T KOG0745|consen 372 ISRRLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVL 451 (564)
T ss_pred HHHhhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHH
Confidence 11110 0 0 0111111 11 1456677899999999999999999999999999
Q ss_pred H----HHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCC
Q psy14504 647 N----IQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSP 707 (951)
Q Consensus 647 ~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~ 707 (951)
. ..+.++...+...++++.++++|++.+++....+..|+|.|++. ++++|-...|.-|
T Consensus 452 tEPknaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsI---lE~~LleamfevP 513 (564)
T KOG0745|consen 452 TEPKNALGKQYKKLFGMDNVELHFTEKALEAIAQLALKRKTGARGLRSI---LESLLLEAMFEVP 513 (564)
T ss_pred hcchhhHHHHHHHHhccCCeeEEecHHHHHHHHHHHHhhccchHHHHHH---HHHHHhhhcccCC
Confidence 8 55667777777789999999999999999999999999999999 9999988888655
No 48
>KOG0736|consensus
Probab=99.87 E-value=2.4e-21 Score=216.86 Aligned_cols=202 Identities=24% Similarity=0.373 Sum_probs=161.6
Q ss_pred cCCCCCccccHHHHHHHHHHHH------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 107 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l~------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 107 (951)
--+-+|+=|.+++...++..+. -+..++||||||||||||.+|+|+|-++ +..++++.
T Consensus 668 nV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEc----------sL~FlSVK 737 (953)
T KOG0736|consen 668 NVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATEC----------SLNFLSVK 737 (953)
T ss_pred ccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhc----------eeeEEeec
Confidence 3367788888888877776543 2346789999999999999999999998 88899998
Q ss_pred hhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCc-----hhHHhhhhhhcc------CCcEEE
Q psy14504 108 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS-----IDAGNMLKPELS------RGELHC 176 (951)
Q Consensus 108 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~-----~~~~~~L~~~le------~~~i~v 176 (951)
.-.+. ..|+|++|++++++|++|+ ...|||+|+||+|+|.|+++..|. ..+...|+..|+ ...+.|
T Consensus 738 GPELL--NMYVGqSE~NVR~VFerAR-~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFV 814 (953)
T KOG0736|consen 738 GPELL--NMYVGQSEENVREVFERAR-SAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFV 814 (953)
T ss_pred CHHHH--HHHhcchHHHHHHHHHHhh-ccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEE
Confidence 88888 7899999999999999999 556999999999999998764332 224455555553 357999
Q ss_pred EEeecchHHHHhhhcCHHHhh--cceE-EEeeCC-CHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 177 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEP-DIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p-~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
|||||+++ .+||+|+| ||+. ++++++ +.+.+..+|+++.+++....++++ ..+++.+ +..+.
T Consensus 815 iGATNRPD-----LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLdedVdL-----~eiAk~c----p~~~T 880 (953)
T KOG0736|consen 815 IGATNRPD-----LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLDEDVDL-----VEIAKKC----PPNMT 880 (953)
T ss_pred EecCCCcc-----ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCCCCcCH-----HHHHhhC----CcCCc
Confidence 99999999 89999999 9997 999999 677788999999998877666643 4445544 45566
Q ss_pred chhHHHHHHHHHHHhH
Q psy14504 253 PDKAIDLIDEAAAKIK 268 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~ 268 (951)
+++...++..|...+.
T Consensus 881 GADlYsLCSdA~l~Ai 896 (953)
T KOG0736|consen 881 GADLYSLCSDAMLAAI 896 (953)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 7888888887765443
No 49
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.87 E-value=4.3e-21 Score=213.58 Aligned_cols=204 Identities=21% Similarity=0.209 Sum_probs=161.4
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN-------------- 96 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~-------------- 96 (951)
.+|.+||||.+|+++|||+..++.|...+..+...| +||+|||||||||+|+.+|+.+.+...+.
T Consensus 6 ~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~ 85 (484)
T PRK14956 6 EVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEIT 85 (484)
T ss_pred chhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHH
Confidence 579999999999999999999999999888877666 79999999999999999999986532110
Q ss_pred CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 97 SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
......+++++.+.- .| ...++.+.+.+. ..++..|+||||+|.|. .++++.|+..+|.
T Consensus 86 ~g~~~dviEIdaas~------~g--Vd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls--------~~A~NALLKtLEEPp 149 (484)
T PRK14956 86 KGISSDVLEIDAASN------RG--IENIRELRDNVKFAPMGGKYKVYIIDEVHMLT--------DQSFNALLKTLEEPP 149 (484)
T ss_pred ccCCccceeechhhc------cc--HHHHHHHHHHHHhhhhcCCCEEEEEechhhcC--------HHHHHHHHHHhhcCC
Confidence 011123444443211 11 223455544443 12345799999999994 3678889999986
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
+.+++|++|+... .+.+++++||..+.|.+++.++....++.++.. .++.++++++..+++.++|.+
T Consensus 150 ~~viFILaTte~~-----kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~----Egi~~e~eAL~~Ia~~S~Gd~---- 216 (484)
T PRK14956 150 AHIVFILATTEFH-----KIPETILSRCQDFIFKKVPLSVLQDYSEKLCKI----ENVQYDQEGLFWIAKKGDGSV---- 216 (484)
T ss_pred CceEEEeecCChh-----hccHHHHhhhheeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCChH----
Confidence 7899999999877 899999999999999999999999999988874 578999999999999999987
Q ss_pred CchhHHHHHHHHHHH
Q psy14504 252 MPDKAIDLIDEAAAK 266 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~ 266 (951)
++++++++++++.
T Consensus 217 --RdAL~lLeq~i~~ 229 (484)
T PRK14956 217 --RDMLSFMEQAIVF 229 (484)
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999987754
No 50
>KOG2028|consensus
Probab=99.86 E-value=3.8e-21 Score=197.64 Aligned_cols=207 Identities=21% Similarity=0.319 Sum_probs=160.9
Q ss_pred cchHHHHhcCCCCCccccHHHHH---HHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIR---RAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~---~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
.||+|++||+++++.|||+..+. .|...+...+.++++|.|||||||||||+.|+...... ...++ .+
T Consensus 126 ~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~-------Syrfv--el 196 (554)
T KOG2028|consen 126 KPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKH-------SYRFV--EL 196 (554)
T ss_pred CChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCC-------ceEEE--EE
Confidence 48999999999999999997653 34556678999999999999999999999999865221 22344 44
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHh----cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchH
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISN----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNE 184 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~----~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~ 184 (951)
++..++. +.++.+|+.+.+ .....||||||||++.. ..++.|++.+|+|.|.+|++|+.++
T Consensus 197 SAt~a~t-------~dvR~ife~aq~~~~l~krkTilFiDEiHRFNk--------sQQD~fLP~VE~G~I~lIGATTENP 261 (554)
T KOG2028|consen 197 SATNAKT-------NDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNK--------SQQDTFLPHVENGDITLIGATTENP 261 (554)
T ss_pred eccccch-------HHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhh--------hhhhcccceeccCceEEEecccCCC
Confidence 4433322 367888887762 24578999999999965 3456899999999999999999887
Q ss_pred HHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhh---------hcCCCCChHHHHHHHHHhhhhcccCCCchh
Q psy14504 185 YRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEV---------HHGVEITDPAIVAASELSYRYISDRFMPDK 255 (951)
Q Consensus 185 ~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~---------~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 255 (951)
.+.++.+|.+||..+.+...+.++...||.+-+..+.. +..+.+++.++++++.++.+.. +.
T Consensus 262 ---SFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDa------R~ 332 (554)
T KOG2028|consen 262 ---SFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDA------RA 332 (554)
T ss_pred ---ccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchH------HH
Confidence 67899999999999999999999999999764442211 1124578899999999999887 77
Q ss_pred HHHHHHHHHHHhHHhh
Q psy14504 256 AIDLIDEAAAKIKIEI 271 (951)
Q Consensus 256 a~~ll~~a~~~~~~~~ 271 (951)
+.+.++.+...+..+.
T Consensus 333 aLN~Lems~~m~~tr~ 348 (554)
T KOG2028|consen 333 ALNALEMSLSMFCTRS 348 (554)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8888887755544443
No 51
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.86 E-value=3.9e-21 Score=210.71 Aligned_cols=244 Identities=19% Similarity=0.252 Sum_probs=199.1
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 518 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 518 (951)
.+.++|.+.++..+....++.... ..++|+.|++||||..+|++|++..-+...+|+.+||..+...-..+.+
T Consensus 244 f~~Iig~S~~m~~~~~~akr~A~t-------dstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESEL 316 (560)
T COG3829 244 FDDIIGESPAMLRVLELAKRIAKT-------DSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESEL 316 (560)
T ss_pred hhhhccCCHHHHHHHHHHHhhcCC-------CCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHH
Confidence 357899999998888888765522 2379999999999999999999999888999999999999998888999
Q ss_pred cCCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhh
Q psy14504 519 IGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 597 (951)
Q Consensus 519 ~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 597 (951)
||...| |+|...++. ...+..+.++.||+|||..++...|..||.+|+++.+..-.|.+.-.-++.||+|||.....+
T Consensus 317 FGye~GAFTGA~~~GK-~GlfE~A~gGTLFLDEIgempl~LQaKLLRVLQEkei~rvG~t~~~~vDVRIIAATN~nL~~~ 395 (560)
T COG3829 317 FGYEKGAFTGASKGGK-PGLFELANGGTLFLDEIGEMPLPLQAKLLRVLQEKEIERVGGTKPIPVDVRIIAATNRNLEKM 395 (560)
T ss_pred hCcCCccccccccCCC-CcceeeccCCeEEehhhccCCHHHHHHHHHHHhhceEEecCCCCceeeEEEEEeccCcCHHHH
Confidence 999887 777666432 355677888999999999999999999999999999997766666667889999999877654
Q ss_pred hhhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHH
Q psy14504 598 KEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKI 674 (951)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L 674 (951)
.+ .+.|+.+|++|++. -|..|||.+ +|+..++...+.++..++...- ..+++++++.|
T Consensus 396 i~-----------------~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v--~~ls~~a~~~L 456 (560)
T COG3829 396 IA-----------------EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNV--KGLSPDALALL 456 (560)
T ss_pred Hh-----------------cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCc--ccCCHHHHHHH
Confidence 44 56899999999976 667778755 8999999999988877664432 34999999999
Q ss_pred HHhcccccccccccccchHHHHHHHHhhcccCCccceeeccccc
Q psy14504 675 SNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLI 718 (951)
Q Consensus 675 ~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~ 718 (951)
.+ |+|+.++|.|... +++++- + ...+.+|...|+.
T Consensus 457 ~~--y~WPGNVRELeNv---iER~v~---~-~~~~~~I~~~~lp 491 (560)
T COG3829 457 LR--YDWPGNVRELENV---IERAVN---L-VESDGLIDADDLP 491 (560)
T ss_pred Hh--CCCCchHHHHHHH---HHHHHh---c-cCCcceeehhhcc
Confidence 88 9999999999998 777773 1 2334445555555
No 52
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.86 E-value=5.9e-21 Score=210.89 Aligned_cols=265 Identities=17% Similarity=0.219 Sum_probs=207.4
Q ss_pred cccccChhHHHHHHHHhhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCC
Q psy14504 399 LKTKVGSEEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGP 478 (951)
Q Consensus 399 ~~~~v~~~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~Gp 478 (951)
+.+.++.+.+...+.+.....-... +...-..-.......++|++.++..+...+.+.... ..++|++|+
T Consensus 103 l~KP~~~~~L~~~v~ral~~~~~~~---e~~~~~~~~~~~~~~liG~S~am~~l~~~i~kvA~s-------~a~VLI~GE 172 (464)
T COG2204 103 LEKPFDLDRLLAIVERALELRELQR---ENRRSLKRAKSLGGELVGESPAMQQLRRLIAKVAPS-------DASVLITGE 172 (464)
T ss_pred eeCCCCHHHHHHHHHHHHHHhhhhh---hhhhhhhccccccCCceecCHHHHHHHHHHHHHhCC-------CCCEEEECC
Confidence 3445677777776665554311000 000000001134578999999999999999876532 236999999
Q ss_pred CCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHH
Q psy14504 479 TGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSD 557 (951)
Q Consensus 479 pGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~ 557 (951)
+||||..+|++|++..-+.+.+|+.+||..+......+.+||+..| ++|.... -...+..+.+++||||||..++..
T Consensus 173 SGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~--r~G~fE~A~GGTLfLDEI~~mpl~ 250 (464)
T COG2204 173 SGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITR--RIGRFEQANGGTLFLDEIGEMPLE 250 (464)
T ss_pred CCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccc--cCcceeEcCCceEEeeccccCCHH
Confidence 9999999999999999888899999999999998888999999887 5555433 234677888999999999999999
Q ss_pred HHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecC
Q psy14504 558 VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRY 636 (951)
Q Consensus 558 ~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~ 636 (951)
+|..||.+|+++.+..-.|...-.-++.||++||........ .+.|+++|++|++. .+..||
T Consensus 251 ~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~-----------------~G~FReDLyyRLnV~~i~iPp 313 (464)
T COG2204 251 LQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVA-----------------AGRFREDLYYRLNVVPLRLPP 313 (464)
T ss_pred HHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHH-----------------cCCcHHHHHhhhccceecCCc
Confidence 999999999999999877766666789999999987654333 56899999999976 677788
Q ss_pred CCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 637 LNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 637 l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
|.+ +||.-++..++++++.+....- ..+++++++.|.. |+|+.++|.+.+. +++++
T Consensus 314 LRER~EDIp~L~~hfl~~~~~~~~~~~--~~~s~~a~~~L~~--y~WPGNVREL~N~---ver~~ 371 (464)
T COG2204 314 LRERKEDIPLLAEHFLKRFAAELGRPP--KGFSPEALAALLA--YDWPGNVRELENV---VERAV 371 (464)
T ss_pred ccccchhHHHHHHHHHHHHHHHcCCCC--CCCCHHHHHHHHh--CCCChHHHHHHHH---HHHHH
Confidence 865 8999999999988887664322 6899999999988 9999999999998 77766
No 53
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.85 E-value=2.1e-20 Score=212.40 Aligned_cols=204 Identities=19% Similarity=0.238 Sum_probs=159.2
Q ss_pred cCCCCCccccHHHHHHHHHHH----------HcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVL----------QRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l----------~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
..+|+++.|.+...+.+.... .-+.+.++||+||||||||++|+++|+++ +.+++.++++
T Consensus 224 ~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~----------~~~~~~l~~~ 293 (489)
T CHL00195 224 NEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW----------QLPLLRLDVG 293 (489)
T ss_pred CCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEEhH
Confidence 346889999887766655421 12456789999999999999999999998 8899999998
Q ss_pred hhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC----chhHHhhhhhhcc--CCcEEEEEeecch
Q psy14504 110 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG----SIDAGNMLKPELS--RGELHCIGATTLN 183 (951)
Q Consensus 110 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~----~~~~~~~L~~~le--~~~i~vI~at~~~ 183 (951)
.+. +++.|+.+.+++.+|..+.. ..||||||||+|.++......+ +..+...++..+. ...+.+|+|||.+
T Consensus 294 ~l~--~~~vGese~~l~~~f~~A~~-~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~ 370 (489)
T CHL00195 294 KLF--GGIVGESESRMRQMIRIAEA-LSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNI 370 (489)
T ss_pred Hhc--ccccChHHHHHHHHHHHHHh-cCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCCh
Confidence 887 56899999999999998874 4699999999999987433221 1223344445553 4578999999999
Q ss_pred HHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHH
Q psy14504 184 EYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLI 260 (951)
Q Consensus 184 ~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll 260 (951)
+ .+|++++| ||+. ++|+.|+.++|.+|++.++.+.... ...+..+..++..+.+|. +.++..++
T Consensus 371 ~-----~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~---~~~~~dl~~La~~T~GfS-----GAdI~~lv 437 (489)
T CHL00195 371 D-----LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPK---SWKKYDIKKLSKLSNKFS-----GAEIEQSI 437 (489)
T ss_pred h-----hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCC---cccccCHHHHHhhcCCCC-----HHHHHHHH
Confidence 8 89999998 9996 9999999999999999888864321 223455788888887776 78888888
Q ss_pred HHHHHHhHH
Q psy14504 261 DEAAAKIKI 269 (951)
Q Consensus 261 ~~a~~~~~~ 269 (951)
.+|+..+..
T Consensus 438 ~eA~~~A~~ 446 (489)
T CHL00195 438 IEAMYIAFY 446 (489)
T ss_pred HHHHHHHHH
Confidence 888765543
No 54
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.85 E-value=1.3e-20 Score=216.17 Aligned_cols=204 Identities=19% Similarity=0.189 Sum_probs=161.1
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCCC--------------
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNS-------------- 97 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~~-------------- 97 (951)
.|.+||||++|+++|||+..++.|...+..++..|. ||+||+||||||+|+.||+.+.+......
T Consensus 5 vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~ 84 (830)
T PRK07003 5 VLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDE 84 (830)
T ss_pred hHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhc
Confidence 489999999999999999999999999988777775 89999999999999999999865321100
Q ss_pred cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--C
Q psy14504 98 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 172 (951)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~ 172 (951)
....+++++|.++- .....++.+++.+.. ..+..|+||||+|.|.. ...|.|+..||. .
T Consensus 85 G~h~DviEIDAas~--------rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~--------~A~NALLKtLEEPP~ 148 (830)
T PRK07003 85 GRFVDYVEMDAASN--------RGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTN--------HAFNAMLKTLEEPPP 148 (830)
T ss_pred CCCceEEEeccccc--------ccHHHHHHHHHHHHhccccCCceEEEEeChhhCCH--------HHHHHHHHHHHhcCC
Confidence 01124555544221 112235556655431 23456999999999943 567888888975 4
Q ss_pred cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 173 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
.++||++||... .+.+.++|||..+.|..++.++....|+.++.. +++.++++++..+++.+.+.+
T Consensus 149 ~v~FILaTtd~~-----KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~----EgI~id~eAL~lIA~~A~Gsm----- 214 (830)
T PRK07003 149 HVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPAGHIVSHLERILGE----ERIAFEPQALRLLARAAQGSM----- 214 (830)
T ss_pred CeEEEEEECChh-----hccchhhhheEEEecCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 789999999887 788999999999999999999999999988874 578899999999999999988
Q ss_pred chhHHHHHHHHHHHh
Q psy14504 253 PDKAIDLIDEAAAKI 267 (951)
Q Consensus 253 p~~a~~ll~~a~~~~ 267 (951)
++++++++++....
T Consensus 215 -RdALsLLdQAia~~ 228 (830)
T PRK07003 215 -RDALSLTDQAIAYS 228 (830)
T ss_pred -HHHHHHHHHHHHhc
Confidence 99999999887643
No 55
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.85 E-value=8.2e-19 Score=199.51 Aligned_cols=160 Identities=21% Similarity=0.351 Sum_probs=116.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLD 549 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iD 549 (951)
.+||+||||||||++|+++|..+ +.+++.++++.+.. +|+|.++. +.++..++...+||||||
T Consensus 261 GILL~GPpGTGKTllAkaiA~e~---~~~~~~l~~~~l~~------------~~vGese~~l~~~f~~A~~~~P~IL~ID 325 (489)
T CHL00195 261 GLLLVGIQGTGKSLTAKAIANDW---QLPLLRLDVGKLFG------------GIVGESESRMRQMIRIAEALSPCILWID 325 (489)
T ss_pred eEEEECCCCCcHHHHHHHHHHHh---CCCEEEEEhHHhcc------------cccChHHHHHHHHHHHHHhcCCcEEEeh
Confidence 69999999999999999999998 78999999876554 26666554 445555677788999999
Q ss_pred cccccCH------------HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHH
Q psy14504 550 EIEKANS------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVK 617 (951)
Q Consensus 550 Eid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~ 617 (951)
|||++.. .+.+.|++.|++ ...++++|+|||...
T Consensus 326 EID~~~~~~~~~~d~~~~~rvl~~lL~~l~~-----------~~~~V~vIaTTN~~~----------------------- 371 (489)
T CHL00195 326 EIDKAFSNSESKGDSGTTNRVLATFITWLSE-----------KKSPVFVVATANNID----------------------- 371 (489)
T ss_pred hhhhhhccccCCCCchHHHHHHHHHHHHHhc-----------CCCceEEEEecCChh-----------------------
Confidence 9997632 356677887774 234678889999643
Q ss_pred hccChhHh--hccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 618 IYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 618 ~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
.++|+++ +|||.++.++.++.++..+|++..+.+... ...++.-++.|++ ....|.-+||...
T Consensus 372 -~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~--------~~~~~~dl~~La~--~T~GfSGAdI~~l 436 (489)
T CHL00195 372 -LLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRP--------KSWKKYDIKKLSK--LSNKFSGAEIEQS 436 (489)
T ss_pred -hCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCC--------CcccccCHHHHHh--hcCCCCHHHHHHH
Confidence 3567777 499999999999999999998877766321 0112233556666 3334556676654
No 56
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.85 E-value=7.4e-21 Score=205.28 Aligned_cols=227 Identities=17% Similarity=0.260 Sum_probs=186.2
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
..+||++.++..+...+...... ..++|+.|++||||..+|++|++...+...+|+.+||..+...-..+++|
T Consensus 223 ~~iIG~S~am~~ll~~i~~VA~S-------d~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELF 295 (550)
T COG3604 223 GGIIGRSPAMRQLLKEIEVVAKS-------DSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELF 295 (550)
T ss_pred ccceecCHHHHHHHHHHHHHhcC-------CCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHh
Confidence 46899999999999999876522 23799999999999999999999999999999999999999999999999
Q ss_pred CCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhh
Q psy14504 520 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 598 (951)
Q Consensus 520 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 598 (951)
|+..| +.|.... -...++-+.++.||+|||..++.+.|..||.+|++|.+..-.|...-.-++.+|++||.......
T Consensus 296 GHeKGAFTGA~~~--r~GrFElAdGGTLFLDEIGelPL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIAATNRDL~~~V 373 (550)
T COG3604 296 GHEKGAFTGAINT--RRGRFELADGGTLFLDEIGELPLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIAATNRDLEEMV 373 (550)
T ss_pred cccccccccchhc--cCcceeecCCCeEechhhccCCHHHHHHHHHHHhhcceeecCCCceeEEEEEEEeccchhHHHHH
Confidence 99876 4443221 22345667789999999999999999999999999999976665544557889999997654432
Q ss_pred hhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Q psy14504 599 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 675 (951)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 675 (951)
+ .+.|+.+|++|++. -+.+|||.+ +|+.-++..++.+++.++... .+.++++|++.|.
T Consensus 374 ~-----------------~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~--~l~ls~~Al~~L~ 434 (550)
T COG3604 374 R-----------------DGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRA--ILSLSAEALELLS 434 (550)
T ss_pred H-----------------cCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCc--ccccCHHHHHHHH
Confidence 2 56799999999975 445666654 788888888888877655332 4899999999998
Q ss_pred HhcccccccccccccchHHHHHHH
Q psy14504 676 NIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 676 ~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
+ |.|+.+||.+.+| +++.+
T Consensus 435 ~--y~wPGNVRELen~---veRav 453 (550)
T COG3604 435 S--YEWPGNVRELENV---VERAV 453 (550)
T ss_pred c--CCCCCcHHHHHHH---HHHHH
Confidence 8 8999999999999 88876
No 57
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=2.1e-20 Score=212.21 Aligned_cols=204 Identities=19% Similarity=0.206 Sum_probs=160.9
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCC-----C---CC-----
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEV-----P---NS----- 97 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~-----~---~~----- 97 (951)
..|.+||||++|+++|||+..++.|...+...+..|. ||+||+||||||+|+.+|+.+.+..- + ..
T Consensus 4 ~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~s 83 (700)
T PRK12323 4 QVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRA 83 (700)
T ss_pred hhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHH
Confidence 3589999999999999999999999999998887775 89999999999999999999965210 0 00
Q ss_pred ------cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhh
Q psy14504 98 ------LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE 168 (951)
Q Consensus 98 ------~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~ 168 (951)
....++++++.+.- .....++.+++.+. ..++..|+||||+|.|.. ...|.|+..
T Consensus 84 C~~I~aG~hpDviEIdAas~--------~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~--------~AaNALLKT 147 (700)
T PRK12323 84 CTEIDAGRFVDYIEMDAASN--------RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN--------HAFNAMLKT 147 (700)
T ss_pred HHHHHcCCCCcceEeccccc--------CCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH--------HHHHHHHHh
Confidence 01124555554311 11224555555543 233457999999999943 677889999
Q ss_pred ccC--CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q psy14504 169 LSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 246 (951)
Q Consensus 169 le~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 246 (951)
||. +.+++|++||.+. .+.+.++|||..+.|..++.++....|+.++.. .++.++++++..++..+++.
T Consensus 148 LEEPP~~v~FILaTtep~-----kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~----Egi~~d~eAL~~IA~~A~Gs 218 (700)
T PRK12323 148 LEEPPEHVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGE----EGIAHEVNALRLLAQAAQGS 218 (700)
T ss_pred hccCCCCceEEEEeCChH-----hhhhHHHHHHHhcccCCCChHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 986 6789999999888 788999999999999999999999999988864 47889999999999999887
Q ss_pred cccCCCchhHHHHHHHHHHH
Q psy14504 247 ISDRFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 247 ~~~~~~p~~a~~ll~~a~~~ 266 (951)
+ ++++++++++...
T Consensus 219 ~------RdALsLLdQaia~ 232 (700)
T PRK12323 219 M------RDALSLTDQAIAY 232 (700)
T ss_pred H------HHHHHHHHHHHHh
Confidence 7 9999999987653
No 58
>KOG0739|consensus
Probab=99.84 E-value=2.1e-20 Score=187.38 Aligned_cols=183 Identities=23% Similarity=0.368 Sum_probs=151.2
Q ss_pred CCCCccccHHHHHHHHHHH------------HcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 42 KLDPVIGRDDEIRRAIQVL------------QRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l------------~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
+-+++-|.+...+.|...+ .+.+.++|||||||||||+.||+++|-+. +..++++..+
T Consensus 131 kWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA----------nSTFFSvSSS 200 (439)
T KOG0739|consen 131 KWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA----------NSTFFSVSSS 200 (439)
T ss_pred chhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc----------CCceEEeehH
Confidence 6778999998877776633 24567899999999999999999999988 7899999999
Q ss_pred hhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhh----c-----cCCcEEEEEee
Q psy14504 110 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE----L-----SRGELHCIGAT 180 (951)
Q Consensus 110 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~----l-----e~~~i~vI~at 180 (951)
++. ++|.|++++.++.+|+-|++ +.|+|+||||||.|+..+....+ ++...++.. | .+..+.|+++|
T Consensus 201 DLv--SKWmGESEkLVknLFemARe-~kPSIIFiDEiDslcg~r~enEs-easRRIKTEfLVQMqGVG~d~~gvLVLgAT 276 (439)
T KOG0739|consen 201 DLV--SKWMGESEKLVKNLFEMARE-NKPSIIFIDEIDSLCGSRSENES-EASRRIKTEFLVQMQGVGNDNDGVLVLGAT 276 (439)
T ss_pred HHH--HHHhccHHHHHHHHHHHHHh-cCCcEEEeehhhhhccCCCCCch-HHHHHHHHHHHHhhhccccCCCceEEEecC
Confidence 999 78999999999999999984 56999999999999987754433 333334332 2 24578999999
Q ss_pred cchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 181 TLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 181 ~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
|-+- .+|.+++|||.. |+||.|....|..+++-.+.. ....+++..+..++..+.+|.
T Consensus 277 NiPw-----~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~----tp~~LT~~d~~eL~~kTeGyS 335 (439)
T KOG0739|consen 277 NIPW-----VLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGD----TPHVLTEQDFKELARKTEGYS 335 (439)
T ss_pred CCch-----hHHHHHHHHhhcceeccCCcHHHhhhhheeccCC----CccccchhhHHHHHhhcCCCC
Confidence 9886 899999999996 999999999999998765553 345688999999999999986
No 59
>CHL00181 cbbX CbbX; Provisional
Probab=99.84 E-value=4.8e-20 Score=197.53 Aligned_cols=218 Identities=18% Similarity=0.300 Sum_probs=152.2
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHh-------hhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC----
Q psy14504 430 KLLNIENLLCKRVVGQDEAISAVSNAIRR-------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE---- 498 (951)
Q Consensus 430 ~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~-------~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~---- 498 (951)
.+.++.+.|.+.++|++.+++.+...+.. ...|+..+.. ..+++|+||||||||++|+++|+.++..+
T Consensus 13 ~~~~~~~~l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~-~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~ 91 (287)
T CHL00181 13 QIQEVLDILDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNP-GLHMSFTGSPGTGKTTVALKMADILYKLGYIKK 91 (287)
T ss_pred CHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC-CceEEEECCCCCCHHHHHHHHHHHHHHcCCCCC
Confidence 46677888999999999999988766421 2345544443 34799999999999999999999885422
Q ss_pred CceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEcccccc---------CHHHHHHHHHHhhcc
Q psy14504 499 ESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKA---------NSDVFNILLQILDDG 569 (951)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~---------~~~~~~~Ll~~le~g 569 (951)
.+++.++.+++... |+|.... .....++.+.++||||||++.+ .+++++.|++.|+++
T Consensus 92 ~~~~~v~~~~l~~~------------~~g~~~~-~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~ 158 (287)
T CHL00181 92 GHLLTVTRDDLVGQ------------YIGHTAP-KTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ 158 (287)
T ss_pred CceEEecHHHHHHH------------HhccchH-HHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC
Confidence 34676766554332 4454332 3456667778899999999986 568899999999862
Q ss_pred eeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHH
Q psy14504 570 RLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 649 (951)
Q Consensus 570 ~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~ 649 (951)
..+++||++++.... .. ....+|+|.+||+.+|.|++++.+++.+|+...
T Consensus 159 -----------~~~~~vI~ag~~~~~--~~-----------------~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~ 208 (287)
T CHL00181 159 -----------RDDLVVIFAGYKDRM--DK-----------------FYESNPGLSSRIANHVDFPDYTPEELLQIAKIM 208 (287)
T ss_pred -----------CCCEEEEEeCCcHHH--HH-----------------HHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHH
Confidence 356778887764211 00 113469999999999999999999999998888
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHhccccccc-ccccccchHHHHHHH
Q psy14504 650 LNILKNKLLKMNMDLKISKAALKKISNIGFDLIYG-ARDVHGCKKSLSILL 699 (951)
Q Consensus 650 l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g-~~dlhg~~~~l~~~l 699 (951)
+.+....+. -...+.+++++.+.++.+.+| +|++.++ +++++
T Consensus 209 l~~~~~~l~-----~~~~~~L~~~i~~~~~~~~~GNaR~vrn~---ve~~~ 251 (287)
T CHL00181 209 LEEQQYQLT-----PEAEKALLDYIKKRMEQPLFANARSVRNA---LDRAR 251 (287)
T ss_pred HHHhcCCCC-----hhHHHHHHHHHHHhCCCCCCccHHHHHHH---HHHHH
Confidence 776421111 112233455555555656666 8999998 55544
No 60
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=3.5e-19 Score=202.89 Aligned_cols=204 Identities=20% Similarity=0.221 Sum_probs=160.7
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN-------------- 96 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~-------------- 96 (951)
..|.+||||.+|+++||++..++.|...+.+.+..|. ||+||+||||||+|+++|+.+.+...+.
T Consensus 3 ~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~ 82 (702)
T PRK14960 3 QVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVN 82 (702)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHh
Confidence 3689999999999999999999999999988776655 9999999999999999999986532110
Q ss_pred CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 97 SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
......++.++.++- . ....++.++..+. ..++..|+||||+|.|.. ...+.|+..++.
T Consensus 83 ~g~hpDviEIDAAs~------~--~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~--------~A~NALLKtLEEPP 146 (702)
T PRK14960 83 EGRFIDLIEIDAASR------T--KVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLST--------HSFNALLKTLEEPP 146 (702)
T ss_pred cCCCCceEEeccccc------C--CHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCH--------HHHHHHHHHHhcCC
Confidence 011224555554321 1 1224556665543 123457999999999944 567889999986
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
+.+.+|++|+.+. .+.+.+++||..+.|.+++.++....++.++.+ .++.++++++..++..+++.+
T Consensus 147 ~~v~FILaTtd~~-----kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~k----EgI~id~eAL~~IA~~S~GdL---- 213 (702)
T PRK14960 147 EHVKFLFATTDPQ-----KLPITVISRCLQFTLRPLAVDEITKHLGAILEK----EQIAADQDAIWQIAESAQGSL---- 213 (702)
T ss_pred CCcEEEEEECChH-----hhhHHHHHhhheeeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 6788888888776 678899999999999999999999999988874 578999999999999998887
Q ss_pred CchhHHHHHHHHHHH
Q psy14504 252 MPDKAIDLIDEAAAK 266 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~ 266 (951)
++++++++.+++.
T Consensus 214 --RdALnLLDQaIay 226 (702)
T PRK14960 214 --RDALSLTDQAIAY 226 (702)
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999988764
No 61
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.84 E-value=5.6e-20 Score=182.42 Aligned_cols=181 Identities=18% Similarity=0.343 Sum_probs=119.9
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 518 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 518 (951)
.++++||++.+..+.-.++.... ...+..|++||||||+||||+|+.||+++ +.++...+.+.+...
T Consensus 23 L~efiGQ~~l~~~l~i~i~aa~~----r~~~l~h~lf~GPPG~GKTTLA~IIA~e~---~~~~~~~sg~~i~k~------ 89 (233)
T PF05496_consen 23 LDEFIGQEHLKGNLKILIRAAKK----RGEALDHMLFYGPPGLGKTTLARIIANEL---GVNFKITSGPAIEKA------ 89 (233)
T ss_dssp CCCS-S-HHHHHHHHHHHHHHHC----TTS---EEEEESSTTSSHHHHHHHHHHHC---T--EEEEECCC--SC------
T ss_pred HHHccCcHHHHhhhHHHHHHHHh----cCCCcceEEEECCCccchhHHHHHHHhcc---CCCeEeccchhhhhH------
Confidence 36789999999998888876542 12345689999999999999999999999 667766655433221
Q ss_pred cCCCCCCccccccchhHHHHH-hCCCeEEEEccccccCHHHHHHHHHHhhcceeec--CCC-----eEeecCCeEEEEec
Q psy14504 519 IGAPPGYIGYEEGGYLTEIVR-RKPYSLILLDEIEKANSDVFNILLQILDDGRLTD--NRG-----RTINFRNTIIVMTS 590 (951)
Q Consensus 519 ~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~--~~g-----~~~~~~~~iiI~tt 590 (951)
+.+...+. -.++.||||||||++++.+|+.|+..||+|.+.. +.| ..++..+..+|.+|
T Consensus 90 -------------~dl~~il~~l~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligAT 156 (233)
T PF05496_consen 90 -------------GDLAAILTNLKEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGAT 156 (233)
T ss_dssp -------------HHHHHHHHT--TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEE
T ss_pred -------------HHHHHHHHhcCCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeee
Confidence 22333332 2456899999999999999999999999998752 332 35566778888887
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 670 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 670 (951)
+. .+.++++|.+||..+..+..|+.+++.+|+.+... -..+.+++++
T Consensus 157 Tr------------------------~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~---------~l~i~i~~~~ 203 (233)
T PF05496_consen 157 TR------------------------AGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSAR---------ILNIEIDEDA 203 (233)
T ss_dssp SS------------------------GCCTSHCCCTTSSEEEE----THHHHHHHHHHCCH---------CTT-EE-HHH
T ss_pred cc------------------------ccccchhHHhhcceecchhcCCHHHHHHHHHHHHH---------HhCCCcCHHH
Confidence 75 23468899999987789999999999999654332 2238899999
Q ss_pred HHHHHHhc
Q psy14504 671 LKKISNIG 678 (951)
Q Consensus 671 ~~~L~~~~ 678 (951)
...|+..+
T Consensus 204 ~~~Ia~rs 211 (233)
T PF05496_consen 204 AEEIARRS 211 (233)
T ss_dssp HHHHHHCT
T ss_pred HHHHHHhc
Confidence 99999854
No 62
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.84 E-value=5.8e-20 Score=209.09 Aligned_cols=196 Identities=26% Similarity=0.359 Sum_probs=158.1
Q ss_pred chHHHHhcCCCCCccccHHHHHH---HHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRR---AIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~---l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
||++++||.+|+++||++..+.. +..++......+++|+|||||||||+|+++|+.+ +..++.++..
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~----------~~~~~~l~a~ 70 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSSMILWGPPGTGKTTLARIIAGAT----------DAPFEALSAV 70 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 69999999999999999998766 8888888888899999999999999999999987 6677777653
Q ss_pred hhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHH
Q psy14504 110 LLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYR 186 (951)
Q Consensus 110 ~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~ 186 (951)
.. ....++.+++.+.. .+.+.||||||+|.+.. ..++.|+..++.+.+++|++|+...
T Consensus 71 ~~---------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~--------~~q~~LL~~le~~~iilI~att~n~-- 131 (413)
T PRK13342 71 TS---------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNK--------AQQDALLPHVEDGTITLIGATTENP-- 131 (413)
T ss_pred cc---------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCH--------HHHHHHHHHhhcCcEEEEEeCCCCh--
Confidence 21 11234555555531 23567999999999853 5667899999999999999887655
Q ss_pred HhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCC-CCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q psy14504 187 QYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGV-EITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 187 ~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~-~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 265 (951)
...+++++++||..+.|++++.++...+++..+...+. ++ .+++++++.++..+.+.. +.+.++++.++.
T Consensus 132 -~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~--~~i~i~~~al~~l~~~s~Gd~------R~aln~Le~~~~ 202 (413)
T PRK13342 132 -SFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKER--GLVELDDEALDALARLANGDA------RRALNLLELAAL 202 (413)
T ss_pred -hhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHhCCCCH------HHHHHHHHHHHH
Confidence 34789999999988999999999999999887765432 44 789999999999987765 888888887764
Q ss_pred H
Q psy14504 266 K 266 (951)
Q Consensus 266 ~ 266 (951)
.
T Consensus 203 ~ 203 (413)
T PRK13342 203 G 203 (413)
T ss_pred c
Confidence 3
No 63
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.83 E-value=1.7e-19 Score=192.61 Aligned_cols=215 Identities=19% Similarity=0.270 Sum_probs=160.7
Q ss_pred CCCCccccHHHHHHHHHHHH---------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQ---------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~---------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
.+++++|.+++.+++..+.. .+...|+||+|||||||||+|+++|+.+...+. .....++.+
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~---~~~~~~v~~ 80 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNV---LSKGHLIEV 80 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCc---ccCCceEEe
Confidence 46789999988766654321 123468899999999999999999998854321 224567888
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchH
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNE 184 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~ 184 (951)
+++++. +.+.|+....++.+|..+. ++||||||+|.|...++.....+.++.|+..++. +.+++|+++++.+
T Consensus 81 ~~~~l~--~~~~g~~~~~~~~~~~~a~----~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~ 154 (261)
T TIGR02881 81 ERADLV--GEYIGHTAQKTREVIKKAL----GGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAGYSDE 154 (261)
T ss_pred cHHHhh--hhhccchHHHHHHHHHhcc----CCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecCCcch
Confidence 888876 5688888888889888764 4599999999997533222234567778888864 5678888888777
Q ss_pred HHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc----ccCCCchhHHHH
Q psy14504 185 YRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI----SDRFMPDKAIDL 259 (951)
Q Consensus 185 ~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~----~~~~~p~~a~~l 259 (951)
+..+..++|++++||.. |.|++++.+++.+|++.++.. .+..++++++..+.....+.. ......+.+.++
T Consensus 155 ~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~----~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~ 230 (261)
T TIGR02881 155 MDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE----REYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNI 230 (261)
T ss_pred hHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH----cCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHH
Confidence 66678899999999975 999999999999999988875 467789999988877654432 123345667778
Q ss_pred HHHHHHHhHH
Q psy14504 260 IDEAAAKIKI 269 (951)
Q Consensus 260 l~~a~~~~~~ 269 (951)
++.|......
T Consensus 231 ~e~a~~~~~~ 240 (261)
T TIGR02881 231 IEKAIRRQAV 240 (261)
T ss_pred HHHHHHHHHH
Confidence 8877765543
No 64
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.83 E-value=2e-19 Score=202.15 Aligned_cols=202 Identities=23% Similarity=0.303 Sum_probs=156.9
Q ss_pred cCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
.-+++++.|.++.++.+...+. -..+.++||+||||||||++|+++|+.+ +.+++.+
T Consensus 127 ~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~----------~~~~i~v 196 (389)
T PRK03992 127 NVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIRV 196 (389)
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh----------CCCEEEe
Confidence 3467789999998888877542 1557789999999999999999999998 7789999
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC---CchhHHhhhhhhc---c----CCcEEE
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSIDAGNMLKPEL---S----RGELHC 176 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~~~~~L~~~l---e----~~~i~v 176 (951)
+++.+. ..+.|+.+..++.+|..+.. ..|+||||||+|.+++.+... +..+.+..+..++ . .+.+.|
T Consensus 197 ~~~~l~--~~~~g~~~~~i~~~f~~a~~-~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~V 273 (389)
T PRK03992 197 VGSELV--QKFIGEGARLVRELFELARE-KAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKI 273 (389)
T ss_pred ehHHHh--HhhccchHHHHHHHHHHHHh-cCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEE
Confidence 888876 56788888899999998874 458999999999998655422 1233444444443 2 357999
Q ss_pred EEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCc
Q psy14504 177 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 253 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 253 (951)
|+|||.++ .+|++++| ||+. |+|+.|+.++|.+||+..+........ ..+..++..+.+|. +
T Consensus 274 I~aTn~~~-----~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~~~-----~~~~~la~~t~g~s-----g 338 (389)
T PRK03992 274 IAATNRID-----ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLADD-----VDLEELAELTEGAS-----G 338 (389)
T ss_pred EEecCChh-----hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCCCc-----CCHHHHHHHcCCCC-----H
Confidence 99999988 89999998 9986 999999999999999987765432222 23566777776665 7
Q ss_pred hhHHHHHHHHHHHhHH
Q psy14504 254 DKAIDLIDEAAAKIKI 269 (951)
Q Consensus 254 ~~a~~ll~~a~~~~~~ 269 (951)
.++..++.+|+..+..
T Consensus 339 adl~~l~~eA~~~a~~ 354 (389)
T PRK03992 339 ADLKAICTEAGMFAIR 354 (389)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888999888765543
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=99.83 E-value=6.4e-20 Score=201.85 Aligned_cols=196 Identities=18% Similarity=0.224 Sum_probs=153.6
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 111 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l 111 (951)
.||++||||.+|++++|+++.++.+..++.....+|+||+|||||||||+|+++|+.+.+... ...+++++.++.
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~~~~~-----~~~~~eln~sd~ 75 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNY-----KEAVLELNASDD 75 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHhcccC-----ccceeeeccccc
Confidence 379999999999999999999999999888888889999999999999999999999854221 123555554332
Q ss_pred hcCccccccHHHHHHHHHHHHHh------cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecch
Q psy14504 112 LAGTKYRGEFEDRLKKILKEISN------NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLN 183 (951)
Q Consensus 112 ~~~~~~~g~~~~~l~~~~~~a~~------~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~ 183 (951)
. ... .++..+..... .....|++|||+|.|.. ..++.|+..++. ....+|.+||..
T Consensus 76 ~----~~~----~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~--------~aq~aL~~~lE~~~~~t~~il~~n~~ 139 (319)
T PLN03025 76 R----GID----VVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTS--------GAQQALRRTMEIYSNTTRFALACNTS 139 (319)
T ss_pred c----cHH----HHHHHHHHHHhccccCCCCCeEEEEEechhhcCH--------HHHHHHHHHHhcccCCceEEEEeCCc
Confidence 1 111 23333332211 12357999999999954 556788888874 456788888876
Q ss_pred HHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q psy14504 184 EYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 263 (951)
Q Consensus 184 ~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 263 (951)
. .+.+++++||..++|++|+.++....|+.++++ .++.++++++..++..+.+.+ +.+++.++.+
T Consensus 140 ~-----~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~----egi~i~~~~l~~i~~~~~gDl------R~aln~Lq~~ 204 (319)
T PLN03025 140 S-----KIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEA----EKVPYVPEGLEAIIFTADGDM------RQALNNLQAT 204 (319)
T ss_pred c-----ccchhHHHhhhcccCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHH
Confidence 6 778999999999999999999999999988874 588999999999999999887 8888888743
No 66
>KOG0737|consensus
Probab=99.83 E-value=3.6e-20 Score=193.46 Aligned_cols=196 Identities=24% Similarity=0.365 Sum_probs=158.7
Q ss_pred CCCCccccHHHHHHHHHHHH--------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQ--------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 107 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~--------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 107 (951)
+|+++=|.+.++..+.+.+. -+.+.+|||+||||||||.+|+++|++. ++.++.+.
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akea----------ga~fInv~ 159 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEA----------GANFINVS 159 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHc----------CCCcceee
Confidence 67888899988888776432 2456799999999999999999999998 88999999
Q ss_pred hhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhc----------cCCcEEEE
Q psy14504 108 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----------SRGELHCI 177 (951)
Q Consensus 108 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l----------e~~~i~vI 177 (951)
.+.+. ++|.|+.++.++.+|.-+... .|+|+||||+|.++..+ ..+..++...++... .+..|.|+
T Consensus 160 ~s~lt--~KWfgE~eKlv~AvFslAsKl-~P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVl 235 (386)
T KOG0737|consen 160 VSNLT--SKWFGEAQKLVKAVFSLASKL-QPSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVL 235 (386)
T ss_pred ccccc--hhhHHHHHHHHHHHHhhhhhc-CcceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEE
Confidence 98888 589999999999999998844 59999999999999888 444556665555443 23369999
Q ss_pred EeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhH
Q psy14504 178 GATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKA 256 (951)
Q Consensus 178 ~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a 256 (951)
||||++. .+|.++.||+.. +.++.|+.++|..||+-+++.......+ .+..++..+.+|. +.+.
T Consensus 236 gATNRP~-----DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e~~v-----D~~~iA~~t~GyS-----GSDL 300 (386)
T KOG0737|consen 236 GATNRPF-----DLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLEDDV-----DLDEIAQMTEGYS-----GSDL 300 (386)
T ss_pred eCCCCCc-----cHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccCccc-----CHHHHHHhcCCCc-----HHHH
Confidence 9999998 899999999986 9999999999999999998865444333 4567788888877 5666
Q ss_pred HHHHHHHHHH
Q psy14504 257 IDLIDEAAAK 266 (951)
Q Consensus 257 ~~ll~~a~~~ 266 (951)
..++..|+..
T Consensus 301 kelC~~Aa~~ 310 (386)
T KOG0737|consen 301 KELCRLAALR 310 (386)
T ss_pred HHHHHHHhHh
Confidence 6666665543
No 67
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=6.6e-20 Score=190.07 Aligned_cols=164 Identities=27% Similarity=0.438 Sum_probs=131.7
Q ss_pred ccCCChHHHHHHHHHHHHh--------hhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~--------~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
+.|-|.+..++.+.+++.. ...|..+|+ .+|||||||||||.||||+|+.. ...|+++.+|+++.
T Consensus 151 ~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPK----GVLLYGPPGTGKTLLAkAVA~~T---~AtFIrvvgSElVq 223 (406)
T COG1222 151 EDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPK----GVLLYGPPGTGKTLLAKAVANQT---DATFIRVVGSELVQ 223 (406)
T ss_pred hhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCC----ceEeeCCCCCcHHHHHHHHHhcc---CceEEEeccHHHHH
Confidence 4678999999999998843 244555554 49999999999999999999888 78999999999998
Q ss_pred hhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeE
Q psy14504 512 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 578 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 578 (951)
+ |+|+... +.+|..++...+|||||||||.+. .++|.+|+++|..-.-.|
T Consensus 224 K------------YiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD----- 286 (406)
T COG1222 224 K------------YIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFD----- 286 (406)
T ss_pred H------------HhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCC-----
Confidence 6 8887665 788888999999999999999764 589999999887522122
Q ss_pred eecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 579 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 579 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
+..++-+|++||... .+.|+|+ +|||..|.|+.++.+...+|++-+..+
T Consensus 287 -~~~nvKVI~ATNR~D------------------------~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrk 337 (406)
T COG1222 287 -PRGNVKVIMATNRPD------------------------ILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRK 337 (406)
T ss_pred -CCCCeEEEEecCCcc------------------------ccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhh
Confidence 235788999999743 2466666 799999999999999999996554443
No 68
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.83 E-value=2.8e-19 Score=199.34 Aligned_cols=203 Identities=18% Similarity=0.221 Sum_probs=155.7
Q ss_pred hcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
..-+++++.|.+..++.+...+. -..+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 140 p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l----------~~~fi~ 209 (398)
T PTZ00454 140 PDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHT----------TATFIR 209 (398)
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEE
Confidence 34478899999988877766442 1456889999999999999999999988 778888
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC---CchhHHhhhhhhc---c----CCcEE
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSIDAGNMLKPEL---S----RGELH 175 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~~~~~L~~~l---e----~~~i~ 175 (951)
+..+.+. .++.|+.+..++.+|..+. ...|+||||||+|.+...+... .+...+..+..++ + ...+.
T Consensus 210 i~~s~l~--~k~~ge~~~~lr~lf~~A~-~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~ 286 (398)
T PTZ00454 210 VVGSEFV--QKYLGEGPRMVRDVFRLAR-ENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVK 286 (398)
T ss_pred EehHHHH--HHhcchhHHHHHHHHHHHH-hcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEE
Confidence 8877766 5688998889999999987 4569999999999998654221 1223333333333 2 35789
Q ss_pred EEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 176 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 176 vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
+|+|||.++ .+||+++| ||+. |+|+.|+.++|..|++.+..+...... -.+..++..+.+|.
T Consensus 287 VI~aTN~~d-----~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~~d-----vd~~~la~~t~g~s----- 351 (398)
T PTZ00454 287 VIMATNRAD-----TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLSEE-----VDLEDFVSRPEKIS----- 351 (398)
T ss_pred EEEecCCch-----hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCCcc-----cCHHHHHHHcCCCC-----
Confidence 999999998 89999998 9986 999999999999999988876433222 23456667766655
Q ss_pred chhHHHHHHHHHHHhHH
Q psy14504 253 PDKAIDLIDEAAAKIKI 269 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~~ 269 (951)
|.++..++.+|...+..
T Consensus 352 gaDI~~l~~eA~~~A~r 368 (398)
T PTZ00454 352 AADIAAICQEAGMQAVR 368 (398)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 88899999988766543
No 69
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=8.9e-20 Score=186.43 Aligned_cols=247 Identities=25% Similarity=0.422 Sum_probs=180.2
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHhh-h-cCCC----CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14504 433 NIENLLCKRVVGQDEAISAVSNAIRRS-R-SGLS----DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 506 (951)
Q Consensus 433 ~l~~~l~~~v~Gq~~~~~~l~~~~~~~-~-~~~~----~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 506 (951)
++-..|+++++||+.|++.+.-+++.. + ..+. +---|. ++|+.||+|+|||++||.||+.. +.||+.+..
T Consensus 8 eIV~eLd~yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PK-NILMIGpTGVGKTEIARRLAkl~---~aPFiKVEA 83 (444)
T COG1220 8 EIVSELDRYIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPK-NILMIGPTGVGKTEIARRLAKLA---GAPFIKVEA 83 (444)
T ss_pred HHHHHHHhHhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCcc-ceEEECCCCCcHHHHHHHHHHHh---CCCeEEEEe
Confidence 455678899999999999999988542 2 2222 222343 89999999999999999999998 789998887
Q ss_pred ccccch----------------------------------------hchhcccCCCCCCccccc----------------
Q psy14504 507 SEFIEK----------------------------------------HSISRLIGAPPGYIGYEE---------------- 530 (951)
Q Consensus 507 ~~~~~~----------------------------------------~~~~~l~g~~~~~~g~~~---------------- 530 (951)
+.|++- .-+..|++......|..+
T Consensus 84 TKfTEVGYVGrDVesivRDLve~av~lvke~~~~~vk~~ae~~aeeRild~Lvp~~~~~~g~~~~~~~~~~~r~~~rkkL 163 (444)
T COG1220 84 TKFTEVGYVGRDVESIIRDLVEIAVKLVREEKIEKVKDKAEELAEERILDALVPPAKNFWGQSENKQESSATREKFRKKL 163 (444)
T ss_pred eeeeecccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCcCcccccchHHHHHHHHHH
Confidence 776631 000112222111111000
Q ss_pred --------------------------------------------------cc------------------------hhHH
Q psy14504 531 --------------------------------------------------GG------------------------YLTE 536 (951)
Q Consensus 531 --------------------------------------------------~~------------------------~l~~ 536 (951)
.+ ...+
T Consensus 164 r~GeLdd~eIeiev~~~~~~~~~i~~~pgme~~~~~l~~m~~~~~~~kkkkrk~~Vk~A~~~L~~eea~KLid~e~i~~e 243 (444)
T COG1220 164 REGELDDKEIEIEVADKGPPGFEIMGPPGMEEMTNNLQDMFGNLGGKKKKKRKLKVKEAKKLLIEEEADKLIDQEEIKQE 243 (444)
T ss_pred HcCCCCccEEEEEEeccCCCccccCCCCcHHHHHHHHHHHHHHhcCCCcceeeeeHHHHHHHHHHHHHHhhcCHHHHHHH
Confidence 00 0001
Q ss_pred HH-HhCCCeEEEEccccccC------------HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccc
Q psy14504 537 IV-RRKPYSLILLDEIEKAN------------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 603 (951)
Q Consensus 537 ~~-~~~~~~vl~iDEid~~~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~ 603 (951)
++ +....+|+||||||++. ..||.-||.+++.-.+...+| .+...+.+||++..+......
T Consensus 244 Ai~~aE~~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG-~VkTdHILFIasGAFh~sKPS----- 317 (444)
T COG1220 244 AIDAAEQNGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYG-PVKTDHILFIASGAFHVAKPS----- 317 (444)
T ss_pred HHHHHHhcCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeecccc-ccccceEEEEecCceecCChh-----
Confidence 11 12336999999999864 268999999999655554444 356678888888876543321
Q ss_pred cHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHH----HHHHHHHHHHHhcCCccccchHHHHHHHHhcc
Q psy14504 604 DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIGF 679 (951)
Q Consensus 604 ~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~ 679 (951)
-+-|+|.+||+..|.+.+|+.+|+.+|+. ..++++...++..++.+.|++++++.|++..|
T Consensus 318 ---------------DLiPELQGRfPIRVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~ 382 (444)
T COG1220 318 ---------------DLIPELQGRFPIRVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAY 382 (444)
T ss_pred ---------------hcChhhcCCCceEEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHH
Confidence 25799999999999999999999999998 66778888889999999999999999998765
Q ss_pred -----cccccccccccchHHHHHHHHhhcccCC
Q psy14504 680 -----DLIYGARDVHGCKKSLSILLKKIHKKSP 707 (951)
Q Consensus 680 -----~~~~g~~dlhg~~~~l~~~l~~~~~~~~ 707 (951)
..+.|+|-+|.. ++++|+.+.|..+
T Consensus 383 ~vN~~~ENIGARRLhTv---lErlLediSFeA~ 412 (444)
T COG1220 383 QVNEKTENIGARRLHTV---LERLLEDISFEAP 412 (444)
T ss_pred HhcccccchhHHHHHHH---HHHHHHHhCccCC
Confidence 357999999999 9999999999766
No 70
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=1.5e-19 Score=211.77 Aligned_cols=203 Identities=17% Similarity=0.208 Sum_probs=158.7
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCC---C----------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN---S---------- 97 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~---~---------- 97 (951)
.+|.+||||.+|+++|||+..++.|...+..++..|. ||+|||||||||+|+++|+.+.+..... .
T Consensus 4 ~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~ 83 (944)
T PRK14949 4 QVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIA 83 (944)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHh
Confidence 4689999999999999999999999999988888886 8999999999999999999986532100 0
Q ss_pred -cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 98 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 98 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
.....++.++.+. ..+ ...++.+...+. ..++..|+||||+|.|. .+.++.|+..||.
T Consensus 84 ~g~~~DviEidAas------~~k--VDdIReLie~v~~~P~~gk~KViIIDEAh~LT--------~eAqNALLKtLEEPP 147 (944)
T PRK14949 84 QGRFVDLIEVDAAS------RTK--VDDTRELLDNVQYRPSRGRFKVYLIDEVHMLS--------RSSFNALLKTLEEPP 147 (944)
T ss_pred cCCCceEEEecccc------ccC--HHHHHHHHHHHHhhhhcCCcEEEEEechHhcC--------HHHHHHHHHHHhccC
Confidence 0011223333211 111 123455554443 12345799999999994 4788899999986
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
+.+++|++|+.+. .+.+.+++||..+.|.+++.++....|+.++.. .++.++++++..++..+.|.+
T Consensus 148 ~~vrFILaTTe~~-----kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~----EgI~~edeAL~lIA~~S~Gd~---- 214 (944)
T PRK14949 148 EHVKFLLATTDPQ-----KLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQ----EQLPFEAEALTLLAKAANGSM---- 214 (944)
T ss_pred CCeEEEEECCCch-----hchHHHHHhheEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 6788899888887 688999999999999999999999999888775 478899999999999998877
Q ss_pred CchhHHHHHHHHHH
Q psy14504 252 MPDKAIDLIDEAAA 265 (951)
Q Consensus 252 ~p~~a~~ll~~a~~ 265 (951)
++++.+++.+++
T Consensus 215 --R~ALnLLdQala 226 (944)
T PRK14949 215 --RDALSLTDQAIA 226 (944)
T ss_pred --HHHHHHHHHHHH
Confidence 999999988774
No 71
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.82 E-value=6.3e-20 Score=193.49 Aligned_cols=188 Identities=19% Similarity=0.319 Sum_probs=137.4
Q ss_pred ccCCChHHHH---HHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAI---SAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~---~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.++||++.+ ..+.+.+...+ .++++|||||||||||+|+.||... +..|..++...
T Consensus 24 de~vGQ~HLlg~~~~lrr~v~~~~---------l~SmIl~GPPG~GKTTlA~liA~~~---~~~f~~~sAv~-------- 83 (436)
T COG2256 24 DEVVGQEHLLGEGKPLRRAVEAGH---------LHSMILWGPPGTGKTTLARLIAGTT---NAAFEALSAVT-------- 83 (436)
T ss_pred HHhcChHhhhCCCchHHHHHhcCC---------CceeEEECCCCCCHHHHHHHHHHhh---CCceEEecccc--------
Confidence 4578999988 45666665433 3489999999999999999999988 66777766532
Q ss_pred cccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCC
Q psy14504 517 RLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 592 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 592 (951)
.|..+.+.+.+..+. ...-|||+|||++++...|+.||..+|+|.+ ++|.+|+-
T Consensus 84 ---------~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~i-------------ilIGATTE 141 (436)
T COG2256 84 ---------SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTI-------------ILIGATTE 141 (436)
T ss_pred ---------ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeE-------------EEEeccCC
Confidence 122222333333321 2357999999999999999999999999753 47776665
Q ss_pred CchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHH
Q psy14504 593 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 672 (951)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 672 (951)
.+. ..+.|+++||+ .++.|.||+.+++.+++.+.+......+. +..+.+++++++
T Consensus 142 NPs----------------------F~ln~ALlSR~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~--~~~~~i~~~a~~ 196 (436)
T COG2256 142 NPS----------------------FELNPALLSRA-RVFELKPLSSEDIKKLLKRALLDEERGLG--GQIIVLDEEALD 196 (436)
T ss_pred CCC----------------------eeecHHHhhhh-heeeeecCCHHHHHHHHHHHHhhhhcCCC--cccccCCHHHHH
Confidence 442 23589999999 79999999999999998875544332222 233669999999
Q ss_pred HHHHhcccccccccccccchHHHHHHHH
Q psy14504 673 KISNIGFDLIYGARDVHGCKKSLSILLK 700 (951)
Q Consensus 673 ~L~~~~~~~~~g~~dlhg~~~~l~~~l~ 700 (951)
+|+. ..-||....+..|+-+..
T Consensus 197 ~l~~------~s~GD~R~aLN~LE~~~~ 218 (436)
T COG2256 197 YLVR------LSNGDARRALNLLELAAL 218 (436)
T ss_pred HHHH------hcCchHHHHHHHHHHHHH
Confidence 9998 345788887777776664
No 72
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=2.6e-19 Score=202.20 Aligned_cols=204 Identities=22% Similarity=0.238 Sum_probs=163.6
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCC-CcEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------C
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKN-NPVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------S 97 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~-~iLL~GppGtGKTtla~~la~~l~~~~~~~--------------~ 97 (951)
+|++||||.+|+++|||+..++.|...+..++.+ ++||+||+||||||+|+.+|+.+.+...|. .
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~ 81 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKN 81 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhc
Confidence 6899999999999999999999999888876666 589999999999999999999886543321 1
Q ss_pred cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--C
Q psy14504 98 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 172 (951)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~ 172 (951)
....+++++|.++- . ....++.+++.+.. .....|++|||+|.|.. ...+.|+..+|. .
T Consensus 82 ~~~~Dv~eidaas~------~--~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~--------~A~NaLLK~LEePp~ 145 (491)
T PRK14964 82 SNHPDVIEIDAASN------T--SVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN--------SAFNALLKTLEEPAP 145 (491)
T ss_pred cCCCCEEEEecccC------C--CHHHHHHHHHHHHhccccCCceEEEEeChHhCCH--------HHHHHHHHHHhCCCC
Confidence 23456677765421 1 12246666666541 23456999999999943 577889999985 5
Q ss_pred cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 173 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
.+++|++|+... .+.+.+++||..+.|.+++.++....++.++++ .++.++++++..+++.+++.+
T Consensus 146 ~v~fIlatte~~-----Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~----Egi~i~~eAL~lIa~~s~Gsl----- 211 (491)
T PRK14964 146 HVKFILATTEVK-----KIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKK----ENIEHDEESLKLIAENSSGSM----- 211 (491)
T ss_pred CeEEEEEeCChH-----HHHHHHHHhheeeecccccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 788888888776 678899999999999999999999999988874 578999999999999998877
Q ss_pred chhHHHHHHHHHHHh
Q psy14504 253 PDKAIDLIDEAAAKI 267 (951)
Q Consensus 253 p~~a~~ll~~a~~~~ 267 (951)
+++.++++.++.+.
T Consensus 212 -R~alslLdqli~y~ 225 (491)
T PRK14964 212 -RNALFLLEQAAIYS 225 (491)
T ss_pred -HHHHHHHHHHHHhc
Confidence 88999999988654
No 73
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.82 E-value=3e-19 Score=191.84 Aligned_cols=215 Identities=17% Similarity=0.292 Sum_probs=153.4
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHh-------hhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC---
Q psy14504 429 EKLLNIENLLCKRVVGQDEAISAVSNAIRR-------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--- 498 (951)
Q Consensus 429 ~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~-------~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~--- 498 (951)
..+.++.+.|.+.++|.+++++.+...+.. .+.|+.. ..|..+++|+||||||||++|+++|+.++..+
T Consensus 11 ~~~~~~~~~l~~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~-~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~ 89 (284)
T TIGR02880 11 SGITEVLDQLDRELIGLKPVKTRIREIAALLLVERLRQRLGLAS-AAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVR 89 (284)
T ss_pred ccHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCc-CCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcc
Confidence 456777888888899999999988775432 2334433 23445899999999999999999999885432
Q ss_pred -CceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEcccccc---------CHHHHHHHHHHhhc
Q psy14504 499 -ESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKA---------NSDVFNILLQILDD 568 (951)
Q Consensus 499 -~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~---------~~~~~~~Ll~~le~ 568 (951)
.+++.++++++.. . |+|.+.. .+.+.+..+.++||||||++.+ +..+++.|++.|++
T Consensus 90 ~~~~v~v~~~~l~~-----~-------~~g~~~~-~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~ 156 (284)
T TIGR02880 90 KGHLVSVTRDDLVG-----Q-------YIGHTAP-KTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN 156 (284)
T ss_pred cceEEEecHHHHhH-----h-------hcccchH-HHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhc
Confidence 3677777655432 1 4443332 3456667777899999999977 46789999999986
Q ss_pred ceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHH
Q psy14504 569 GRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI 648 (951)
Q Consensus 569 g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~ 648 (951)
+ ..++++|++++..... ....++|+|.+||+..|.|++|+.+|+.+|+..
T Consensus 157 ~-----------~~~~~vI~a~~~~~~~-------------------~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~ 206 (284)
T TIGR02880 157 Q-----------RDDLVVILAGYKDRMD-------------------SFFESNPGFSSRVAHHVDFPDYSEAELLVIAGL 206 (284)
T ss_pred C-----------CCCEEEEEeCCcHHHH-------------------HHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHH
Confidence 2 2567788887743111 112458999999999999999999999999888
Q ss_pred HHHHHHHHHHhcCCccccchHHHHHHHHh-----cccccccccccccchHHHHHHH
Q psy14504 649 QLNILKNKLLKMNMDLKISKAALKKISNI-----GFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 649 ~l~~~~~~~~~~~~~l~~~~~~~~~L~~~-----~~~~~~g~~dlhg~~~~l~~~l 699 (951)
++++.. ..+++++++.+... ..+|..++|.++.. +++++
T Consensus 207 ~l~~~~---------~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~---ve~~~ 250 (284)
T TIGR02880 207 MLKEQQ---------YRFSAEAEEAFADYIALRRTQPHFANARSIRNA---IDRAR 250 (284)
T ss_pred HHHHhc---------cccCHHHHHHHHHHHHHhCCCCCCChHHHHHHH---HHHHH
Confidence 877642 34667777776652 12566668888877 44444
No 74
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=2.7e-19 Score=203.63 Aligned_cols=203 Identities=24% Similarity=0.263 Sum_probs=154.6
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------C
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------S 97 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~--------------~ 97 (951)
.|.++|||.+|+++|||+..++.+...+..+..+| +||+|||||||||+|+++|+.+.+...+. .
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~ 82 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDE 82 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhc
Confidence 58899999999999999999999998888777765 79999999999999999999985432110 0
Q ss_pred cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--C
Q psy14504 98 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 172 (951)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~ 172 (951)
.....++.++.+. ..| ...++.+...+. ..+...|+||||+|.|.. +.++.|+..++. +
T Consensus 83 g~~~dv~el~aa~------~~g--id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~--------~a~~~LLk~LE~p~~ 146 (472)
T PRK14962 83 GTFMDVIELDAAS------NRG--IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTK--------EAFNALLKTLEEPPS 146 (472)
T ss_pred CCCCccEEEeCcc------cCC--HHHHHHHHHHHhhChhcCCeEEEEEEChHHhHH--------HHHHHHHHHHHhCCC
Confidence 0112445554321 111 123445444443 123456999999999943 556788888876 6
Q ss_pred cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 173 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
.+++|++|+.+. .+++++.+||..+.|.+++.++...+++..+.. .++.++++++..++..+.+.+
T Consensus 147 ~vv~Ilattn~~-----kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~----egi~i~~eal~~Ia~~s~Gdl----- 212 (472)
T PRK14962 147 HVVFVLATTNLE-----KVPPTIISRCQVIEFRNISDELIIKRLQEVAEA----EGIEIDREALSFIAKRASGGL----- 212 (472)
T ss_pred cEEEEEEeCChH-----hhhHHHhcCcEEEEECCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhCCCH-----
Confidence 788888888765 789999999999999999999999999888764 478899999999999988777
Q ss_pred chhHHHHHHHHHHH
Q psy14504 253 PDKAIDLIDEAAAK 266 (951)
Q Consensus 253 p~~a~~ll~~a~~~ 266 (951)
+.+++.++.++..
T Consensus 213 -R~aln~Le~l~~~ 225 (472)
T PRK14962 213 -RDALTMLEQVWKF 225 (472)
T ss_pred -HHHHHHHHHHHHh
Confidence 7788888876643
No 75
>KOG0735|consensus
Probab=99.82 E-value=2.1e-19 Score=199.37 Aligned_cols=196 Identities=22% Similarity=0.323 Sum_probs=158.3
Q ss_pred CCCCccccHHHHHHHHHHHHc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~~-------------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
+.+++-|..+..+.+.+.+.- +-+.+||||||||||||.||-++|... +..++++..
T Consensus 665 ~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~----------~~~fisvKG 734 (952)
T KOG0735|consen 665 RWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNS----------NLRFISVKG 734 (952)
T ss_pred CceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhC----------CeeEEEecC
Confidence 455777766665555554432 334689999999999999999999987 889999988
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC--C-chhHHhhhhhhccC----CcEEEEEeec
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE--G-SIDAGNMLKPELSR----GELHCIGATT 181 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~--~-~~~~~~~L~~~le~----~~i~vI~at~ 181 (951)
-.+. ++|+|..|+.++.+|..|. ...|||||+||+|++.|.++.. | ...+.|.|+..|+. ..+.++|||+
T Consensus 735 PElL--~KyIGaSEq~vR~lF~rA~-~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Egl~GV~i~aaTs 811 (952)
T KOG0735|consen 735 PELL--SKYIGASEQNVRDLFERAQ-SAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEGLDGVYILAATS 811 (952)
T ss_pred HHHH--HHHhcccHHHHHHHHHHhh-ccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccccceEEEEEecC
Confidence 8888 7899999999999999998 5679999999999999987532 2 34577888888853 4689999999
Q ss_pred chHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHH
Q psy14504 182 LNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAID 258 (951)
Q Consensus 182 ~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ 258 (951)
+++ .+||+|+| |++. ++.+.|+..+|++|++.+...+... ++..++.++..+++|. +++...
T Consensus 812 Rpd-----liDpALLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-----~~vdl~~~a~~T~g~t-----gADlq~ 876 (952)
T KOG0735|consen 812 RPD-----LIDPALLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-----TDVDLECLAQKTDGFT-----GADLQS 876 (952)
T ss_pred Ccc-----ccCHhhcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-----cccchHHHhhhcCCCc-----hhhHHH
Confidence 999 89999999 9997 9999999999999999988754322 2445678888888776 677777
Q ss_pred HHHHHHH
Q psy14504 259 LIDEAAA 265 (951)
Q Consensus 259 ll~~a~~ 265 (951)
++-.|..
T Consensus 877 ll~~A~l 883 (952)
T KOG0735|consen 877 LLYNAQL 883 (952)
T ss_pred HHHHHHH
Confidence 7776643
No 76
>KOG0991|consensus
Probab=99.82 E-value=4.8e-20 Score=178.76 Aligned_cols=208 Identities=18% Similarity=0.242 Sum_probs=161.2
Q ss_pred HHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14504 28 KKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 107 (951)
Q Consensus 28 ~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 107 (951)
..+-.+|.|||||..++++||.++.++++..+...+..+|+++.|||||||||-+.++|++|..... .-.+.+++
T Consensus 11 ~~~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~liisGpPG~GKTTsi~~LAr~LLG~~~-----ke~vLELN 85 (333)
T KOG0991|consen 11 DKYQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPNLIISGPPGTGKTTSILCLARELLGDSY-----KEAVLELN 85 (333)
T ss_pred ccccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCceEeeCCCCCchhhHHHHHHHHHhChhh-----hhHhhhcc
Confidence 3455669999999999999999999999999999999999999999999999999999999854321 12345555
Q ss_pred hhhhhcCccccccHHHHHHHHHHHHH--hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc--CCcEEEEEeecch
Q psy14504 108 IALLLAGTKYRGEFEDRLKKILKEIS--NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS--RGELHCIGATTLN 183 (951)
Q Consensus 108 ~~~l~~~~~~~g~~~~~l~~~~~~a~--~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le--~~~i~vI~at~~~ 183 (951)
.++-. .+.-.+.+++..-+.=. ..+...|+++||+|++.. .++++|+..|| ....++..+||..
T Consensus 86 ASdeR----GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~--------gAQQAlRRtMEiyS~ttRFalaCN~s 153 (333)
T KOG0991|consen 86 ASDER----GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTA--------GAQQALRRTMEIYSNTTRFALACNQS 153 (333)
T ss_pred Ccccc----ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhh--------HHHHHHHHHHHHHcccchhhhhhcch
Confidence 54322 12223333333322211 113346999999999954 56778888887 5678899999988
Q ss_pred HHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q psy14504 184 EYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 263 (951)
Q Consensus 184 ~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 263 (951)
+ .+-+++.|||..+++...+..+.+.-|..+.+ .+++.++++.+++++..+++.+ +.+.+.++..
T Consensus 154 ~-----KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k----~Ekv~yt~dgLeaiifta~GDM------RQalNnLQst 218 (333)
T KOG0991|consen 154 E-----KIIEPIQSRCAILRYSKLSDQQILKRLLEVAK----AEKVNYTDDGLEAIIFTAQGDM------RQALNNLQST 218 (333)
T ss_pred h-----hhhhhHHhhhHhhhhcccCHHHHHHHHHHHHH----HhCCCCCcchHHHhhhhccchH------HHHHHHHHHH
Confidence 7 78899999999999999999988877777666 3679999999999999999998 8888888776
Q ss_pred HHHh
Q psy14504 264 AAKI 267 (951)
Q Consensus 264 ~~~~ 267 (951)
.+..
T Consensus 219 ~~g~ 222 (333)
T KOG0991|consen 219 VNGF 222 (333)
T ss_pred hccc
Confidence 6543
No 77
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.82 E-value=2.1e-19 Score=189.84 Aligned_cols=157 Identities=16% Similarity=0.159 Sum_probs=125.5
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh----cCC
Q psy14504 62 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN----NQK 137 (951)
Q Consensus 62 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~----~~~ 137 (951)
-+.+..++|+||||||||.+|+++|+++ +++++.++.+.+. ++|.|+.++.++.+|..|.. ...
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~el----------g~~~i~vsa~eL~--sk~vGEsEk~IR~~F~~A~~~a~~~~a 212 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKM----------GIEPIVMSAGELE--SENAGEPGKLIRQRYREAADIIKKKGK 212 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHc----------CCCeEEEEHHHhh--cCcCCcHHHHHHHHHHHHHHHhhccCC
Confidence 3566778999999999999999999999 8999999999998 78999999999999999874 357
Q ss_pred CeEEEEecccccccCCCCCCc----hhHHhhhhhhcc----------------CCcEEEEEeecchHHHHhhhcCHHHhh
Q psy14504 138 DIIIFIDELHTMIGTGKVEGS----IDAGNMLKPELS----------------RGELHCIGATTLNEYRQYIEKDAAFER 197 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~~----~~~~~~L~~~le----------------~~~i~vI~at~~~~~~~~~~~~~~l~~ 197 (951)
||||||||||.+++.++..+. +-+...|+.+++ ...+.||+|||.++ .++|+|+|
T Consensus 213 PcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd-----~LDpALlR 287 (413)
T PLN00020 213 MSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFS-----TLYAPLIR 287 (413)
T ss_pred CeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcc-----cCCHhHcC
Confidence 999999999999987643221 112234554432 35699999999998 89999999
Q ss_pred --cceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHH
Q psy14504 198 --RFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASEL 242 (951)
Q Consensus 198 --Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~ 242 (951)
||+.. +..|+.++|..||+.+.+. ..++...+..++..
T Consensus 288 pGRfDk~-i~lPd~e~R~eIL~~~~r~------~~l~~~dv~~Lv~~ 327 (413)
T PLN00020 288 DGRMEKF-YWAPTREDRIGVVHGIFRD------DGVSREDVVKLVDT 327 (413)
T ss_pred CCCCCce-eCCCCHHHHHHHHHHHhcc------CCCCHHHHHHHHHc
Confidence 99973 4589999999999988874 34555555555544
No 78
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.82 E-value=3.3e-19 Score=207.79 Aligned_cols=201 Identities=22% Similarity=0.329 Sum_probs=154.9
Q ss_pred hcCCCCCccccHHHHHHHHHHHH------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
...+|++++|.+...+.+..++. ...+.++||+||||||||++|+++|..+ +.+++.+
T Consensus 50 ~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~----------~~~~~~i 119 (495)
T TIGR01241 50 PKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSI 119 (495)
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCeeec
Confidence 35589999999977666554332 3456789999999999999999999987 7889988
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC--C-c---hhHHhhhhhhc----cCCcEEE
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE--G-S---IDAGNMLKPEL----SRGELHC 176 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~--~-~---~~~~~~L~~~l----e~~~i~v 176 (951)
+.+.+. ..+.|..+..++.+|..+.. ..|+||||||+|.+.+.++.. + . ....+.|+..| +++.++|
T Consensus 120 ~~~~~~--~~~~g~~~~~l~~~f~~a~~-~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~v 196 (495)
T TIGR01241 120 SGSDFV--EMFVGVGASRVRDLFEQAKK-NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIV 196 (495)
T ss_pred cHHHHH--HHHhcccHHHHHHHHHHHHh-cCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEE
Confidence 887766 45678888899999999974 458999999999998765431 1 1 12334444444 3467999
Q ss_pred EEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCc
Q psy14504 177 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 253 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 253 (951)
|+|||.++ .+|++++| ||+. |+|+.|+.++|.+|++.++...... ++..+..++..+.+|. +
T Consensus 197 I~aTn~~~-----~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-----~~~~l~~la~~t~G~s-----g 261 (495)
T TIGR01241 197 IAATNRPD-----VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-----PDVDLKAVARRTPGFS-----G 261 (495)
T ss_pred EEecCChh-----hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-----cchhHHHHHHhCCCCC-----H
Confidence 99999998 89999998 9986 9999999999999999887653211 2344667778777665 7
Q ss_pred hhHHHHHHHHHHHh
Q psy14504 254 DKAIDLIDEAAAKI 267 (951)
Q Consensus 254 ~~a~~ll~~a~~~~ 267 (951)
.++..++.+|+..+
T Consensus 262 adl~~l~~eA~~~a 275 (495)
T TIGR01241 262 ADLANLLNEAALLA 275 (495)
T ss_pred HHHHHHHHHHHHHH
Confidence 88889998876544
No 79
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=2.9e-19 Score=207.45 Aligned_cols=204 Identities=19% Similarity=0.203 Sum_probs=160.4
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCCC-------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNS------------- 97 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~~------------- 97 (951)
..|.+||||.+|+++|||+..++.|...+..++..|. ||+||+||||||+|+.+|+.+.+......
T Consensus 4 ~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~ 83 (647)
T PRK07994 4 QVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIE 83 (647)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHH
Confidence 3689999999999999999999999999998877775 89999999999999999999866321100
Q ss_pred -cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 98 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 98 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
....++++++.+. .. ....++.+++.+. ..++..|+||||+|.|.. ..+|.|+..||.
T Consensus 84 ~g~~~D~ieidaas------~~--~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~--------~a~NALLKtLEEPp 147 (647)
T PRK07994 84 QGRFVDLIEIDAAS------RT--KVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR--------HSFNALLKTLEEPP 147 (647)
T ss_pred cCCCCCceeecccc------cC--CHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH--------HHHHHHHHHHHcCC
Confidence 0111344444321 11 1223555555543 223457999999999943 678899999986
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
+.+++|++|+.+. .+.+.++|||..+.|.+++.++....|+.++.. .++.++++++..++..+.|.+
T Consensus 148 ~~v~FIL~Tt~~~-----kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~----e~i~~e~~aL~~Ia~~s~Gs~---- 214 (647)
T PRK07994 148 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRQQLEHILQA----EQIPFEPRALQLLARAADGSM---- 214 (647)
T ss_pred CCeEEEEecCCcc-----ccchHHHhhheEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 6788999998887 788999999999999999999999999888764 478899999999999999887
Q ss_pred CchhHHHHHHHHHHH
Q psy14504 252 MPDKAIDLIDEAAAK 266 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~ 266 (951)
++++.+++.+.+.
T Consensus 215 --R~Al~lldqaia~ 227 (647)
T PRK07994 215 --RDALSLTDQAIAS 227 (647)
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999887654
No 80
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.81 E-value=2.8e-19 Score=195.80 Aligned_cols=224 Identities=17% Similarity=0.257 Sum_probs=176.8
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCC
Q psy14504 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 521 (951)
Q Consensus 442 v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 521 (951)
++|++.+++.+...+.+.... ..++||+|++||||+++|++|+........+|+.+||..+......+.+||+
T Consensus 1 liG~S~~m~~~~~~~~~~a~~-------~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL-------DRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHHhcc
Confidence 478888888888888776521 1269999999999999999999988777789999999988766556778887
Q ss_pred CCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhh
Q psy14504 522 PPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 600 (951)
Q Consensus 522 ~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 600 (951)
..| +.|.... -...+..+.+++||||||+.++..+|..|+.+++++.+....+......++.+|++|+.....+..
T Consensus 74 ~~g~~~ga~~~--~~G~~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~~~l~~~~~- 150 (329)
T TIGR02974 74 EAGAFTGAQKR--HQGRFERADGGTLFLDELATASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATNADLPALAA- 150 (329)
T ss_pred ccccccCcccc--cCCchhhCCCCEEEeCChHhCCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEechhhHHHHhh-
Confidence 654 3343221 123456677899999999999999999999999999887655544455788999999875543222
Q ss_pred ccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCC--hhhHHHHHHHHHHHHHHHHHhcCCc--cccchHHHHHHH
Q psy14504 601 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN--RKNILSIANIQLNILKNKLLKMNMD--LKISKAALKKIS 675 (951)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~~~--l~~~~~~~~~L~ 675 (951)
.+.|+++|++|++. .|.+|||. .+|+..++..++.++..++ +.. ..+++++++.|.
T Consensus 151 ----------------~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~---~~~~~~~ls~~a~~~L~ 211 (329)
T TIGR02974 151 ----------------EGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMAREL---GLPLFPGFTPQAREQLL 211 (329)
T ss_pred ----------------cCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHh---CCCCCCCcCHHHHHHHH
Confidence 45799999999954 89999998 4899999999888876543 333 479999999998
Q ss_pred HhcccccccccccccchHHHHHHH
Q psy14504 676 NIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 676 ~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
. |+|+.+++.++.+ +++++
T Consensus 212 ~--y~WPGNvrEL~n~---i~~~~ 230 (329)
T TIGR02974 212 E--YHWPGNVRELKNV---VERSV 230 (329)
T ss_pred h--CCCCchHHHHHHH---HHHHH
Confidence 8 8899999999988 77666
No 81
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=3e-19 Score=205.42 Aligned_cols=203 Identities=21% Similarity=0.220 Sum_probs=160.5
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------C
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------S 97 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~--------------~ 97 (951)
.|.+||||.+|+++|||+..++.|...+.....+| +||+|||||||||+|+++|+.+.+...+. .
T Consensus 5 ~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 84 (509)
T PRK14958 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDE 84 (509)
T ss_pred hHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhc
Confidence 58999999999999999999999999998887777 58999999999999999999996532111 0
Q ss_pred cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--C
Q psy14504 98 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 172 (951)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~ 172 (951)
....++++++.++- .....++.+++.+. ..++..|+||||+|.|.+ +..+.|+..||. .
T Consensus 85 g~~~d~~eidaas~--------~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~--------~a~naLLk~LEepp~ 148 (509)
T PRK14958 85 GRFPDLFEVDAASR--------TKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSG--------HSFNALLKTLEEPPS 148 (509)
T ss_pred CCCceEEEEccccc--------CCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCH--------HHHHHHHHHHhccCC
Confidence 11224666654321 11223556665543 123356999999999954 567889999986 5
Q ss_pred cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 173 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
.+++|++|+.+. .+.+.+++||..++|.+++.++....++.+++. .++.++++++..++..+.+.+
T Consensus 149 ~~~fIlattd~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~----egi~~~~~al~~ia~~s~Gsl----- 214 (509)
T PRK14958 149 HVKFILATTDHH-----KLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKE----ENVEFENAALDLLARAANGSV----- 214 (509)
T ss_pred CeEEEEEECChH-----hchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcH-----
Confidence 788888888776 778889999999999999999999998888874 578899999999999998876
Q ss_pred chhHHHHHHHHHHH
Q psy14504 253 PDKAIDLIDEAAAK 266 (951)
Q Consensus 253 p~~a~~ll~~a~~~ 266 (951)
+++.++++++++.
T Consensus 215 -R~al~lLdq~ia~ 227 (509)
T PRK14958 215 -RDALSLLDQSIAY 227 (509)
T ss_pred -HHHHHHHHHHHhc
Confidence 9999999988765
No 82
>cd07425 MPP_Shelphs Shewanella-like phosphatases, metallophosphatase domain. This family includes bacterial, eukaryotic, and archeal proteins orthologous to the Shewanella cold-active protein-tyrosine phosphatase, CAPTPase. CAPTPase is an uncharacterized protein that belongs to the Shelph (Shewanella-like phosphatase) family of PPP (phosphoprotein phosphatases). The PPP family is one of two known protein phosphatase families specific for serine and threonine. In addition to Shelps, the PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cellular processes. PPPs belong to the metal
Probab=99.81 E-value=5e-20 Score=188.28 Aligned_cols=123 Identities=23% Similarity=0.435 Sum_probs=93.8
Q ss_pred ccccccccchHHHHHHHHhhcc-------cCCccceeecccccCCcceEehhHHHHHhcC-------CccEEEcCCChHH
Q psy14504 683 YGARDVHGCKKSLSILLKKIHK-------KSPEANFIFLGDLINKGPQSLDTLRMVYSMR-------NYAKIVLGNHEIH 748 (951)
Q Consensus 683 ~g~~dlhg~~~~l~~~l~~~~~-------~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~-------~~~~~v~GNHe~~ 748 (951)
+.++|||||+++|.++|+.+++ ....+.++++||++|+||.+.+|+++++++. .++.+|+||||.+
T Consensus 1 ~vi~DIHG~~~~l~~ll~~~~~~~~~~~~~~~~d~lv~lGD~vdrG~~~~~vl~~l~~l~~~~~~~~~~v~~l~GNHE~~ 80 (208)
T cd07425 1 VAIGDLHGDLDAFREILKGAGVIDSNDHWIGGSTHLVQLGDIFDRGPDVIEILWLLYKLEQEAAKAGGKVHFLLGNHELM 80 (208)
T ss_pred CEEeCccCCHHHHHHHHHHCCCCCccccccCCCcEEEEECCCcCCCcCHHHHHHHHHHHHHHHHhcCCeEEEeeCCCcHH
Confidence 4689999999999999998876 3467899999999999999999999999884 3588999999999
Q ss_pred HHHHHhhcccCCccccHH-----HhhCCCCHHHHHHHHhcCCceEEeCCEEEEecccCcCCC
Q psy14504 749 LLDVLININKKSKLDTFD-----DILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQWT 805 (951)
Q Consensus 749 ~l~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~p~~~~~~~~~~vHAG~~p~~~ 805 (951)
++................ .........++.+||+++|+++..++++|||||+.|.|.
T Consensus 81 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lP~~~~~~~~~fvHag~~~~w~ 142 (208)
T cd07425 81 NLCGDFRYVHPKYFNEFGGLAMRRRELFSPGGELGRWLRSKPVIVKVNDTLFVHGGLGPLWY 142 (208)
T ss_pred HHcchhccCChhHHHHHHhhhhhHHHhcCCccHHHHHHHhCCeEEEECCEEEEeCCcHHHHh
Confidence 886332111111110110 111112346789999999999999999999999977654
No 83
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.81 E-value=3.2e-19 Score=211.78 Aligned_cols=198 Identities=23% Similarity=0.328 Sum_probs=156.6
Q ss_pred cchHHHHhcCCCCCccccHHHHH---HHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIR---RAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~---~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
.||.+++||.+|++++|++..+. .+...+......+++|+|||||||||+|+++|+.+ +.+++.++.
T Consensus 16 ~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~----------~~~f~~lna 85 (725)
T PRK13341 16 APLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGSLILYGPPGVGKTTLARIIANHT----------RAHFSSLNA 85 (725)
T ss_pred CChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHh----------cCcceeehh
Confidence 38999999999999999999884 56677777888899999999999999999999987 556666654
Q ss_pred hhhhcCccccccHHHHHHHHHHHH----HhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchH
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEI----SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNE 184 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a----~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~ 184 (951)
.. .+. . .++..+..+ .......+|||||+|.+.. ..++.|++.++++.+++|++|+.+.
T Consensus 86 ~~--~~i---~----dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~--------~qQdaLL~~lE~g~IiLI~aTTenp 148 (725)
T PRK13341 86 VL--AGV---K----DLRAEVDRAKERLERHGKRTILFIDEVHRFNK--------AQQDALLPWVENGTITLIGATTENP 148 (725)
T ss_pred hh--hhh---H----HHHHHHHHHHHHhhhcCCceEEEEeChhhCCH--------HHHHHHHHHhcCceEEEEEecCCCh
Confidence 32 111 1 223333332 1223467999999999843 4567889999999999999988766
Q ss_pred HHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhh---hcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHH
Q psy14504 185 YRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEV---HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 261 (951)
Q Consensus 185 ~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~---~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 261 (951)
...+++++++|+..+.|++++.+++..+++.++..... ..++.++++++..++..+.+.+ +.+.++++
T Consensus 149 ---~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~------R~lln~Le 219 (725)
T PRK13341 149 ---YFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDA------RSLLNALE 219 (725)
T ss_pred ---HhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCH------HHHHHHHH
Confidence 34688999999988999999999999999988874332 3468899999999999988777 88888888
Q ss_pred HHHH
Q psy14504 262 EAAA 265 (951)
Q Consensus 262 ~a~~ 265 (951)
.++.
T Consensus 220 ~a~~ 223 (725)
T PRK13341 220 LAVE 223 (725)
T ss_pred HHHH
Confidence 8764
No 84
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.81 E-value=3.8e-19 Score=178.75 Aligned_cols=194 Identities=24% Similarity=0.331 Sum_probs=149.7
Q ss_pred hHHHHhcCCCCCccccHHHHHHHHHHHHc-----CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 34 LTEKARLGKLDPVIGRDDEIRRAIQVLQR-----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 34 l~e~~rp~~l~~lvG~~~~i~~l~~~l~~-----~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
.....||+.|+++|||+++.+++.-++.. ...-|+||+||||.||||||+.+|+++ +.++-....
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Em----------gvn~k~tsG 85 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANEL----------GVNLKITSG 85 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHh----------cCCeEeccc
Confidence 34456999999999999999988876653 445689999999999999999999999 666654443
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC-----------------
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR----------------- 171 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~----------------- 171 (951)
..+.. .| .+..++..+. .+-||||||||+|.+ .+-..|-+.||.
T Consensus 86 p~leK----~g----DlaaiLt~Le---~~DVLFIDEIHrl~~--------~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ 146 (332)
T COG2255 86 PALEK----PG----DLAAILTNLE---EGDVLFIDEIHRLSP--------AVEEVLYPAMEDFRLDIIIGKGPAARSIR 146 (332)
T ss_pred ccccC----hh----hHHHHHhcCC---cCCeEEEehhhhcCh--------hHHHHhhhhhhheeEEEEEccCCccceEe
Confidence 33321 12 3455555554 334999999999966 334456666642
Q ss_pred ---CcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 172 ---GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 172 ---~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
..+.+|+||++.. .+..+|+.||.. .++..++.+|...|+..-... .++.+++++...+++.|
T Consensus 147 ldLppFTLIGATTr~G-----~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~----l~i~i~~~~a~eIA~rS---- 213 (332)
T COG2255 147 LDLPPFTLIGATTRAG-----MLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKI----LGIEIDEEAALEIARRS---- 213 (332)
T ss_pred ccCCCeeEeeeccccc-----cccchhHHhcCCeeeeecCCHHHHHHHHHHHHHH----hCCCCChHHHHHHHHhc----
Confidence 3578999999998 789999999996 899999999999999876654 46889999998888876
Q ss_pred ccCCCchhHHHHHHHHHHHhHHhh
Q psy14504 248 SDRFMPDKAIDLIDEAAAKIKIEI 271 (951)
Q Consensus 248 ~~~~~p~~a~~ll~~a~~~~~~~~ 271 (951)
+..|+-|.+|+....-.+....
T Consensus 214 --RGTPRIAnRLLrRVRDfa~V~~ 235 (332)
T COG2255 214 --RGTPRIANRLLRRVRDFAQVKG 235 (332)
T ss_pred --cCCcHHHHHHHHHHHHHHHHhc
Confidence 4568999999998876665443
No 85
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.81 E-value=3.1e-19 Score=199.85 Aligned_cols=206 Identities=21% Similarity=0.269 Sum_probs=156.9
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14504 35 TEKARLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 101 (951)
Q Consensus 35 ~e~~rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~ 101 (951)
.++..+.+++++.|.+..++.+...+. -..+.++||+||||||||++|+++|+.+ +.
T Consensus 174 ~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el----------~~ 243 (438)
T PTZ00361 174 VDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANET----------SA 243 (438)
T ss_pred cccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhh----------CC
Confidence 455666899999999998888777553 1356789999999999999999999988 66
Q ss_pred eEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC---CCchhHHhhhhhhc-------cC
Q psy14504 102 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV---EGSIDAGNMLKPEL-------SR 171 (951)
Q Consensus 102 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~---~~~~~~~~~L~~~l-------e~ 171 (951)
+++.+..+.+. .++.|+.+..++.+|..+.. ..|+||||||+|.+...+.. .+..+.+..+..++ ..
T Consensus 244 ~fi~V~~seL~--~k~~Ge~~~~vr~lF~~A~~-~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~ 320 (438)
T PTZ00361 244 TFLRVVGSELI--QKYLGDGPKLVRELFRVAEE-NAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSR 320 (438)
T ss_pred CEEEEecchhh--hhhcchHHHHHHHHHHHHHh-CCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhccc
Confidence 78888877766 56888888889999998874 56999999999999865432 22233444444433 34
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcc
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 248 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~ 248 (951)
..+.||+|||..+ .+|++++| ||+. |+|+.|+.++|.+||+..+.+.....+ ..+..++..+.+|.
T Consensus 321 ~~V~VI~ATNr~d-----~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~d-----vdl~~la~~t~g~s- 389 (438)
T PTZ00361 321 GDVKVIMATNRIE-----SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAED-----VDLEEFIMAKDELS- 389 (438)
T ss_pred CCeEEEEecCChH-----HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCcC-----cCHHHHHHhcCCCC-
Confidence 6799999999988 88999987 9996 999999999999999987765432222 23455666666655
Q ss_pred cCCCchhHHHHHHHHHHHhH
Q psy14504 249 DRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 249 ~~~~p~~a~~ll~~a~~~~~ 268 (951)
++++..++.+|+..+.
T Consensus 390 ----gAdI~~i~~eA~~~Al 405 (438)
T PTZ00361 390 ----GADIKAICTEAGLLAL 405 (438)
T ss_pred ----HHHHHHHHHHHHHHHH
Confidence 6777888887765543
No 86
>KOG0740|consensus
Probab=99.81 E-value=5.5e-19 Score=192.18 Aligned_cols=200 Identities=25% Similarity=0.331 Sum_probs=161.9
Q ss_pred HhcCCCCCccccHHHHHHHHHHH------------HcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 38 ARLGKLDPVIGRDDEIRRAIQVL------------QRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 38 ~rp~~l~~lvG~~~~i~~l~~~l------------~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
.++-.++++-|.+...+.+...+ .+....++||.||||+|||+|++++|-+. +..++.
T Consensus 147 ~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~----------~atff~ 216 (428)
T KOG0740|consen 147 LRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES----------GATFFN 216 (428)
T ss_pred CCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh----------cceEee
Confidence 45667888888776554444322 25667799999999999999999999998 889998
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchh-----HHhhhhhhc-----cCCcEE
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSID-----AGNMLKPEL-----SRGELH 175 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~-----~~~~L~~~l-----e~~~i~ 175 (951)
+..+.+. ++|.|+.+..++.+|.-|+ ..+|+|+||||+|.++..+... ..+ ....|.+.. ...+|+
T Consensus 217 iSassLt--sK~~Ge~eK~vralf~vAr-~~qPsvifidEidslls~Rs~~-e~e~srr~ktefLiq~~~~~s~~~drvl 292 (428)
T KOG0740|consen 217 ISASSLT--SKYVGESEKLVRALFKVAR-SLQPSVIFIDEIDSLLSKRSDN-EHESSRRLKTEFLLQFDGKNSAPDDRVL 292 (428)
T ss_pred ccHHHhh--hhccChHHHHHHHHHHHHH-hcCCeEEEechhHHHHhhcCCc-ccccchhhhhHHHhhhccccCCCCCeEE
Confidence 9888888 8999999999999999988 5679999999999999877322 222 122333332 346899
Q ss_pred EEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCch
Q psy14504 176 CIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 254 (951)
Q Consensus 176 vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 254 (951)
+|+|||.+. .+|.+++|||.. ++|+.|+.+.|..+|.+++... +..+++..+..+++++++|. +.
T Consensus 293 vigaTN~P~-----e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~----~~~l~~~d~~~l~~~Tegys-----gs 358 (428)
T KOG0740|consen 293 VIGATNRPW-----ELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQ----PNGLSDLDISLLAKVTEGYS-----GS 358 (428)
T ss_pred EEecCCCch-----HHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhC----CCCccHHHHHHHHHHhcCcc-----cc
Confidence 999999998 999999999996 9999999999999999999863 56678899999999999987 57
Q ss_pred hHHHHHHHHHH
Q psy14504 255 KAIDLIDEAAA 265 (951)
Q Consensus 255 ~a~~ll~~a~~ 265 (951)
++.+++.+|+.
T Consensus 359 di~~l~kea~~ 369 (428)
T KOG0740|consen 359 DITALCKEAAM 369 (428)
T ss_pred cHHHHHHHhhc
Confidence 77777777764
No 87
>CHL00181 cbbX CbbX; Provisional
Probab=99.81 E-value=2e-18 Score=185.08 Aligned_cols=213 Identities=16% Similarity=0.210 Sum_probs=156.6
Q ss_pred CccccHHHHHHHHHHHH---------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 45 PVIGRDDEIRRAIQVLQ---------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~---------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
+++|.+.+.+++..+.. .....|+||+||||||||++|+++|+.+..... ....+++.++.+
T Consensus 24 ~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~---~~~~~~~~v~~~ 100 (287)
T CHL00181 24 ELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGY---IKKGHLLTVTRD 100 (287)
T ss_pred hcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCC---CCCCceEEecHH
Confidence 69999887776654321 012346899999999999999999998754321 124468888887
Q ss_pred hhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCC-CCCchhHHhhhhhhccC--CcEEEEEeecchHHH
Q psy14504 110 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK-VEGSIDAGNMLKPELSR--GELHCIGATTLNEYR 186 (951)
Q Consensus 110 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~-~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~ 186 (951)
.+. +.+.|+++.++..+++.+. +.||||||+|.|.+.+. ...+.++++.|...|+. +.++||++++...+.
T Consensus 101 ~l~--~~~~g~~~~~~~~~l~~a~----ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 101 DLV--GQYIGHTAPKTKEVLKKAM----GGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHH--HHHhccchHHHHHHHHHcc----CCEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 776 5577877777777887763 45999999999865322 22345677888888864 568999999988888
Q ss_pred HhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC--chhHHHHHHHH
Q psy14504 187 QYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM--PDKAIDLIDEA 263 (951)
Q Consensus 187 ~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~--p~~a~~ll~~a 263 (951)
.++..+|+|++||+. |.|++|+.+|+.+|++.++++. +..+++++...+.....+......+ .+.+.++++.+
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~----~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~ 250 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQ----QYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRA 250 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHh----cCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHH
Confidence 888899999999995 9999999999999999998863 4667788777666654432222222 36677888777
Q ss_pred HHHhHHh
Q psy14504 264 AAKIKIE 270 (951)
Q Consensus 264 ~~~~~~~ 270 (951)
......+
T Consensus 251 ~~~~~~r 257 (287)
T CHL00181 251 RMRQANR 257 (287)
T ss_pred HHHHHHH
Confidence 7665543
No 88
>KOG0731|consensus
Probab=99.80 E-value=5.6e-19 Score=203.19 Aligned_cols=204 Identities=22% Similarity=0.305 Sum_probs=158.5
Q ss_pred hcCCCCCccccHHHHHHHHHH---HH---------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQV---LQ---------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~---l~---------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
..-+|.|+.|.++..+.|.++ |. .+-|+++||+||||||||.||+|+|.+. +.+++++
T Consensus 306 t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA----------gVPF~sv 375 (774)
T KOG0731|consen 306 TGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------GVPFFSV 375 (774)
T ss_pred CCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc----------CCceeee
Confidence 446899999999766655554 33 4678899999999999999999999998 9999999
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCC---C-CCchh---HHhhhhhhcc----CCcEE
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK---V-EGSID---AGNMLKPELS----RGELH 175 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~---~-~~~~~---~~~~L~~~le----~~~i~ 175 (951)
+.+.++ ..+.|....+++.+|..++ ...|||+||||||.+...+. . .++.+ ..|.|+..|+ ...++
T Consensus 376 SGSEFv--E~~~g~~asrvr~lf~~ar-~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi 452 (774)
T KOG0731|consen 376 SGSEFV--EMFVGVGASRVRDLFPLAR-KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVI 452 (774)
T ss_pred chHHHH--HHhcccchHHHHHHHHHhh-ccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEE
Confidence 998887 3455666788999999998 45699999999999987663 1 22233 3344444443 45799
Q ss_pred EEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 176 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 176 vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
++++||+++ -+|++|+| ||++ |.++.|+...|.+|++..+.... ...++..+..++.++.+|.
T Consensus 453 ~~a~tnr~d-----~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~----~~~e~~dl~~~a~~t~gf~----- 518 (774)
T KOG0731|consen 453 VLAATNRPD-----ILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKK----LDDEDVDLSKLASLTPGFS----- 518 (774)
T ss_pred EEeccCCcc-----ccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccC----CCcchhhHHHHHhcCCCCc-----
Confidence 999999999 89999999 9997 99999999999999998877533 2223444445677766655
Q ss_pred chhHHHHHHHHHHHhHH
Q psy14504 253 PDKAIDLIDEAAAKIKI 269 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~~ 269 (951)
++++..++.+|+..+..
T Consensus 519 gadl~n~~neaa~~a~r 535 (774)
T KOG0731|consen 519 GADLANLCNEAALLAAR 535 (774)
T ss_pred HHHHHhhhhHHHHHHHH
Confidence 78888888888766543
No 89
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.80 E-value=8.9e-19 Score=213.60 Aligned_cols=201 Identities=22% Similarity=0.308 Sum_probs=158.3
Q ss_pred cCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
..+++++.|.+...+.+...+. ...+.++||+||||||||++|+++|.++ +.+++.+
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~----------~~~fi~v 518 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATES----------GANFIAV 518 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhc----------CCCEEEE
Confidence 3478899999988777766543 2456789999999999999999999998 7899999
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCc----hhHHhhhhhhcc----CCcEEEEE
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS----IDAGNMLKPELS----RGELHCIG 178 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~----~~~~~~L~~~le----~~~i~vI~ 178 (951)
..+.+. ++|.|+.+..++.+|..++. ..|+||||||+|.|.+.++...+ ..+.+.|+..|+ ...++||+
T Consensus 519 ~~~~l~--~~~vGese~~i~~~f~~A~~-~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~ 595 (733)
T TIGR01243 519 RGPEIL--SKWVGESEKAIREIFRKARQ-AAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIA 595 (733)
T ss_pred ehHHHh--hcccCcHHHHHHHHHHHHHh-cCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEE
Confidence 988887 67999999999999999984 45899999999999886643322 234455555553 46799999
Q ss_pred eecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchh
Q psy14504 179 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 255 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 255 (951)
|||.++ .+|++++| ||+. |+|+.|+.++|.+||+......... ++..+..++..+.+|. +.+
T Consensus 596 aTn~~~-----~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-----~~~~l~~la~~t~g~s-----gad 660 (733)
T TIGR01243 596 ATNRPD-----ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-----EDVDLEELAEMTEGYT-----GAD 660 (733)
T ss_pred eCCChh-----hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-----ccCCHHHHHHHcCCCC-----HHH
Confidence 999998 89999998 9996 9999999999999998766543221 1234677888877765 777
Q ss_pred HHHHHHHHHHHhH
Q psy14504 256 AIDLIDEAAAKIK 268 (951)
Q Consensus 256 a~~ll~~a~~~~~ 268 (951)
+..++.+|+..+.
T Consensus 661 i~~~~~~A~~~a~ 673 (733)
T TIGR01243 661 IEAVCREAAMAAL 673 (733)
T ss_pred HHHHHHHHHHHHH
Confidence 8888877765443
No 90
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.80 E-value=1.4e-18 Score=203.60 Aligned_cols=207 Identities=24% Similarity=0.336 Sum_probs=162.1
Q ss_pred hcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
...+++++.|.+.....+...+. .+.+.++||+||||||||++|+++|.++ +.+++.
T Consensus 237 ~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~----------~~~fi~ 306 (494)
T COG0464 237 EDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALES----------RSRFIS 306 (494)
T ss_pred CCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhC----------CCeEEE
Confidence 34577788887765554444221 2455689999999999999999999988 889999
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCc---hhHHhhhhhhcc----CCcEEEEE
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPELS----RGELHCIG 178 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~le----~~~i~vI~ 178 (951)
++.+.+. ++|.|++++.++.+|..|+ ...||||||||+|.+.+.++.... ..+.+.|+..+. ...+.+|+
T Consensus 307 v~~~~l~--sk~vGesek~ir~~F~~A~-~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~ 383 (494)
T COG0464 307 VKGSELL--SKWVGESEKNIRELFEKAR-KLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIA 383 (494)
T ss_pred eeCHHHh--ccccchHHHHHHHHHHHHH-cCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEe
Confidence 9999777 7899999999999999998 556999999999999988764332 246666666663 35688999
Q ss_pred eecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchh
Q psy14504 179 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 255 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 255 (951)
|||.++ .+|++++| ||+. ++|+.|+.++|.+|++..+...... ...+..+..+++.+.+| .+.+
T Consensus 384 aTN~p~-----~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~---~~~~~~~~~l~~~t~~~-----sgad 450 (494)
T COG0464 384 ATNRPD-----DLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP---LAEDVDLEELAEITEGY-----SGAD 450 (494)
T ss_pred cCCCcc-----ccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc---chhhhhHHHHHHHhcCC-----CHHH
Confidence 999998 89999999 9996 9999999999999999888743211 12345566777766664 4788
Q ss_pred HHHHHHHHHHHhHHhh
Q psy14504 256 AIDLIDEAAAKIKIEI 271 (951)
Q Consensus 256 a~~ll~~a~~~~~~~~ 271 (951)
+..++.+|+.....+.
T Consensus 451 i~~i~~ea~~~~~~~~ 466 (494)
T COG0464 451 IAALVREAALEALREA 466 (494)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999998877655443
No 91
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.4e-18 Score=199.26 Aligned_cols=205 Identities=19% Similarity=0.210 Sum_probs=158.9
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN-------------- 96 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~-------------- 96 (951)
.+|++||||.+|+++||++..++.+...+...+..| +||+|||||||||+|+.+|+.+.+.....
T Consensus 4 ~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~ 83 (546)
T PRK14957 4 QALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAIN 83 (546)
T ss_pred hhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 469999999999999999999999999988877666 68999999999999999999986521110
Q ss_pred CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 97 SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
......++.++.... .| ...++.++..+. ..+...|+||||+|.|. ...++.|+..||.
T Consensus 84 ~~~~~dlieidaas~------~g--vd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls--------~~a~naLLK~LEepp 147 (546)
T PRK14957 84 NNSFIDLIEIDAASR------TG--VEETKEILDNIQYMPSQGRYKVYLIDEVHMLS--------KQSFNALLKTLEEPP 147 (546)
T ss_pred cCCCCceEEeecccc------cC--HHHHHHHHHHHHhhhhcCCcEEEEEechhhcc--------HHHHHHHHHHHhcCC
Confidence 001124444443211 11 113444554443 23446799999999984 3678899999987
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
+.+++|++|+... .+.+.+++||..++|.+++.++....|+.++.+ .++.++++++..++..+++.+
T Consensus 148 ~~v~fIL~Ttd~~-----kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~----egi~~e~~Al~~Ia~~s~Gdl---- 214 (546)
T PRK14957 148 EYVKFILATTDYH-----KIPVTILSRCIQLHLKHISQADIKDQLKIILAK----ENINSDEQSLEYIAYHAKGSL---- 214 (546)
T ss_pred CCceEEEEECChh-----hhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5788888887765 677889999999999999999999999888775 478899999999999998877
Q ss_pred CchhHHHHHHHHHHHh
Q psy14504 252 MPDKAIDLIDEAAAKI 267 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~~ 267 (951)
++++++++.++...
T Consensus 215 --R~alnlLek~i~~~ 228 (546)
T PRK14957 215 --RDALSLLDQAISFC 228 (546)
T ss_pred --HHHHHHHHHHHHhc
Confidence 99999999988653
No 92
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.80 E-value=1e-18 Score=197.90 Aligned_cols=181 Identities=25% Similarity=0.337 Sum_probs=135.7
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14504 35 TEKARLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 101 (951)
Q Consensus 35 ~e~~rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~ 101 (951)
.+.+.+.++++|.|.+..++++...+. -..++++||+||||||||++|+++|+.+............
T Consensus 173 ~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~ 252 (512)
T TIGR03689 173 LEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKS 252 (512)
T ss_pred eecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCce
Confidence 455667799999999998888877542 2457889999999999999999999998432110001112
Q ss_pred eEEEEehhhhhcCccccccHHHHHHHHHHHHHhc---CCCeEEEEecccccccCCCCCCchh----HHhhhhhhcc----
Q psy14504 102 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSID----AGNMLKPELS---- 170 (951)
Q Consensus 102 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~----~~~~L~~~le---- 170 (951)
.++.+..+.+. .+|.|+++..++.+|..++.. +.|+||||||+|.+++.+....+.+ ..+.|+..|+
T Consensus 253 ~fl~v~~~eLl--~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~ 330 (512)
T TIGR03689 253 YFLNIKGPELL--NKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVES 330 (512)
T ss_pred eEEeccchhhc--ccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhccccc
Confidence 23334444444 578899999999999988743 3689999999999997764432222 3345555553
Q ss_pred CCcEEEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHh
Q psy14504 171 RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKK 222 (951)
Q Consensus 171 ~~~i~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~ 222 (951)
.+.+++|+|||+++ .+||+++| ||+. |+|+.|+.++|.+|++..+..
T Consensus 331 ~~~ViVI~ATN~~d-----~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~ 380 (512)
T TIGR03689 331 LDNVIVIGASNRED-----MIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD 380 (512)
T ss_pred CCceEEEeccCChh-----hCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc
Confidence 36799999999998 89999999 9996 999999999999999887653
No 93
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.80 E-value=2.3e-19 Score=176.90 Aligned_cols=168 Identities=21% Similarity=0.313 Sum_probs=128.6
Q ss_pred hhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhc
Q psy14504 438 LCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISR 517 (951)
Q Consensus 438 l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 517 (951)
-.+.|+||+.|++...-.++.....-.-..=...++||+||||||||++|+++|... ..+++.++..++...
T Consensus 119 t~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~---kvp~l~vkat~liGe----- 190 (368)
T COG1223 119 TLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA---KVPLLLVKATELIGE----- 190 (368)
T ss_pred cHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc---CCceEEechHHHHHH-----
Confidence 346799999999887777765442111011112289999999999999999999888 789999998877654
Q ss_pred ccCCCCCCccccc--cchhHHHHHhCCCeEEEEccccccC------------HHHHHHHHHHhhcceeecCCCeEeecCC
Q psy14504 518 LIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN------------SDVFNILLQILDDGRLTDNRGRTINFRN 583 (951)
Q Consensus 518 l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~iDEid~~~------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 583 (951)
|+|... ...+...+++..+||+||||+|.+. .++.|+||+.||. . .....
T Consensus 191 -------hVGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDg-i--------~eneG 254 (368)
T COG1223 191 -------HVGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDG-I--------KENEG 254 (368)
T ss_pred -------HhhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccC-c--------ccCCc
Confidence 555433 3667777888899999999999875 2678999999984 1 13345
Q ss_pred eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHH
Q psy14504 584 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNIL 653 (951)
Q Consensus 584 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~ 653 (951)
++.|++||.+. .+.|+..+||..-|.|.-++.++...|++.+++.+
T Consensus 255 VvtIaaTN~p~------------------------~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~ 300 (368)
T COG1223 255 VVTIAATNRPE------------------------LLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKF 300 (368)
T ss_pred eEEEeecCChh------------------------hcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhC
Confidence 78899999643 35789999999999999999999999977776553
No 94
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.6e-18 Score=193.56 Aligned_cols=204 Identities=21% Similarity=0.207 Sum_probs=154.6
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCCC-------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNS------------- 97 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~~------------- 97 (951)
.+|++||||.+|+++|||+..++.+...+..+..+|. ||+|||||||||+|+++|+.+.+......
T Consensus 4 ~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~ 83 (363)
T PRK14961 4 QILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIE 83 (363)
T ss_pred HHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 4689999999999999999999999998888776664 89999999999999999999854211100
Q ss_pred -cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 98 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 98 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
....+++.++.+. . .....++.++..+.. .+...|++|||+|.+.. ..++.|+..++.
T Consensus 84 ~~~~~d~~~~~~~~------~--~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~--------~a~naLLk~lEe~~ 147 (363)
T PRK14961 84 KGLCLDLIEIDAAS------R--TKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSR--------HSFNALLKTLEEPP 147 (363)
T ss_pred cCCCCceEEecccc------c--CCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCH--------HHHHHHHHHHhcCC
Confidence 0012334333211 0 112245566655431 12346999999999843 466778888874
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
+.+.+|.+|+... .+.+++++||..++|++|+.++...+++.+++. .++.++++++..++..+.+.+
T Consensus 148 ~~~~fIl~t~~~~-----~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~----~g~~i~~~al~~ia~~s~G~~---- 214 (363)
T PRK14961 148 QHIKFILATTDVE-----KIPKTILSRCLQFKLKIISEEKIFNFLKYILIK----ESIDTDEYALKLIAYHAHGSM---- 214 (363)
T ss_pred CCeEEEEEcCChH-----hhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5677888887766 688999999999999999999999999988775 468899999999999987765
Q ss_pred CchhHHHHHHHHHHH
Q psy14504 252 MPDKAIDLIDEAAAK 266 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~ 266 (951)
+++.++++.++..
T Consensus 215 --R~al~~l~~~~~~ 227 (363)
T PRK14961 215 --RDALNLLEHAINL 227 (363)
T ss_pred --HHHHHHHHHHHHh
Confidence 8899999988754
No 95
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=2.2e-18 Score=199.41 Aligned_cols=204 Identities=19% Similarity=0.173 Sum_probs=159.8
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC---------------
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------- 96 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~--------------- 96 (951)
.|.+||||.+|+++|||+..++.|...+...+..| +||+||+||||||+|+++|+.+.+...+.
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~ 81 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAP 81 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhc
Confidence 37799999999999999999999999999988888 58999999999999999999987532111
Q ss_pred -CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC-
Q psy14504 97 -SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR- 171 (951)
Q Consensus 97 -~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~- 171 (951)
.....++++++.+.. .| ...++.+...+. ......|+||||+|.|.. .+++.|+..||.
T Consensus 82 ~~~~~~dvieidaas~------~g--vd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~--------~A~NALLK~LEEp 145 (584)
T PRK14952 82 NGPGSIDVVELDAASH------GG--VDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTT--------AGFNALLKIVEEP 145 (584)
T ss_pred ccCCCceEEEeccccc------cC--HHHHHHHHHHHHhhhhcCCceEEEEECCCcCCH--------HHHHHHHHHHhcC
Confidence 011234555543221 11 123444444433 123456999999999943 678899999986
Q ss_pred -CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccC
Q psy14504 172 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 250 (951)
Q Consensus 172 -~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~ 250 (951)
..+++|++|+.+. .+.+++++||..+.|..++.++....|+.+++. .++.++++++..++..+.+.+
T Consensus 146 p~~~~fIL~tte~~-----kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~----egi~i~~~al~~Ia~~s~Gdl--- 213 (584)
T PRK14952 146 PEHLIFIFATTEPE-----KVLPTIRSRTHHYPFRLLPPRTMRALIARICEQ----EGVVVDDAVYPLVIRAGGGSP--- 213 (584)
T ss_pred CCCeEEEEEeCChH-----hhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH---
Confidence 6788898888876 788999999999999999999999999888874 478899999999999988876
Q ss_pred CCchhHHHHHHHHHHHh
Q psy14504 251 FMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 251 ~~p~~a~~ll~~a~~~~ 267 (951)
++++++++.++...
T Consensus 214 ---R~aln~Ldql~~~~ 227 (584)
T PRK14952 214 ---RDTLSVLDQLLAGA 227 (584)
T ss_pred ---HHHHHHHHHHHhcc
Confidence 89999999987643
No 96
>KOG0728|consensus
Probab=99.79 E-value=1e-18 Score=171.09 Aligned_cols=179 Identities=22% Similarity=0.343 Sum_probs=142.2
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14504 35 TEKARLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 101 (951)
Q Consensus 35 ~e~~rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~ 101 (951)
.++....+.+=+=|.++.++.+...+. -..+.++|||||||||||.||+++|... .|
T Consensus 138 VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht----------~c 207 (404)
T KOG0728|consen 138 VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHT----------DC 207 (404)
T ss_pred hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhc----------ce
Confidence 344333333333356666666555432 3557899999999999999999999987 89
Q ss_pred eEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC---CCchhHHhhhhhhcc-------C
Q psy14504 102 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV---EGSIDAGNMLKPELS-------R 171 (951)
Q Consensus 102 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~---~~~~~~~~~L~~~le-------~ 171 (951)
.++.+..+.+. .+|+|+....++.+|--|++ +.|+|+|.||||++.+++.. .+..+++..++.++. .
T Consensus 208 ~firvsgselv--qk~igegsrmvrelfvmare-hapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeat 284 (404)
T KOG0728|consen 208 TFIRVSGSELV--QKYIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEAT 284 (404)
T ss_pred EEEEechHHHH--HHHhhhhHHHHHHHHHHHHh-cCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccc
Confidence 99999999998 78999999999999999985 45999999999999876542 334567777766663 4
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEI 231 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i 231 (951)
..+.+|.+||+.+ -+||+++| |.++ |+||+|+.+.|.+||+-...+.....++++
T Consensus 285 knikvimatnrid-----ild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~rgi~l 342 (404)
T KOG0728|consen 285 KNIKVIMATNRID-----ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTRGINL 342 (404)
T ss_pred cceEEEEeccccc-----cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhcccCH
Confidence 6799999999998 78999999 9997 999999999999999988777776666654
No 97
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=1.7e-18 Score=197.49 Aligned_cols=205 Identities=22% Similarity=0.227 Sum_probs=160.2
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCC-CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCC---------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRS-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVP--------------- 95 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~-~~~iLL~GppGtGKTtla~~la~~l~~~~~~--------------- 95 (951)
.+|.++|||.+|+++|||+..++.|...+...+ +.++||+|||||||||+|+++|+.+.+....
T Consensus 9 ~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C 88 (507)
T PRK06645 9 IPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNC 88 (507)
T ss_pred cchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHH
Confidence 679999999999999999999999998766654 4578999999999999999999998653210
Q ss_pred ---CCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhc
Q psy14504 96 ---NSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL 169 (951)
Q Consensus 96 ---~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l 169 (951)
.......+++++.+. . .....++.+++.+.. .+...|+||||+|.|.. ...+.|+..+
T Consensus 89 ~~i~~~~h~Dv~eidaas------~--~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~--------~a~naLLk~L 152 (507)
T PRK06645 89 ISFNNHNHPDIIEIDAAS------K--TSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSK--------GAFNALLKTL 152 (507)
T ss_pred HHHhcCCCCcEEEeeccC------C--CCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCH--------HHHHHHHHHH
Confidence 001122444444321 1 123356677766642 23456999999999843 5677888888
Q ss_pred cC--CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 170 SR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 170 e~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
+. ..+++|++|+... .+.+++++||..++|.+++.++...+++.++++ .++.++++++..++..+++..
T Consensus 153 Eepp~~~vfI~aTte~~-----kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~----egi~ie~eAL~~Ia~~s~Gsl 223 (507)
T PRK06645 153 EEPPPHIIFIFATTEVQ-----KIPATIISRCQRYDLRRLSFEEIFKLLEYITKQ----ENLKTDIEALRIIAYKSEGSA 223 (507)
T ss_pred hhcCCCEEEEEEeCChH-----HhhHHHHhcceEEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH
Confidence 75 5688888888776 788999999999999999999999999988874 578899999999999988876
Q ss_pred ccCCCchhHHHHHHHHHHHh
Q psy14504 248 SDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 248 ~~~~~p~~a~~ll~~a~~~~ 267 (951)
+++.++++.++...
T Consensus 224 ------R~al~~Ldkai~~~ 237 (507)
T PRK06645 224 ------RDAVSILDQAASMS 237 (507)
T ss_pred ------HHHHHHHHHHHHhh
Confidence 99999999987654
No 98
>CHL00176 ftsH cell division protein; Validated
Probab=99.79 E-value=3.4e-18 Score=200.62 Aligned_cols=200 Identities=22% Similarity=0.306 Sum_probs=151.4
Q ss_pred CCCCCccccHHHHHHHHHHH---H---------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 41 GKLDPVIGRDDEIRRAIQVL---Q---------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~~l---~---------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
.+|++++|.++..+.+..++ . ...+.++||+||||||||++|+++|.++ +.+++.+++
T Consensus 180 ~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~----------~~p~i~is~ 249 (638)
T CHL00176 180 ITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA----------EVPFFSISG 249 (638)
T ss_pred CCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeeeccH
Confidence 47889999987766655443 2 2345689999999999999999999988 788998888
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC---CCchh---HHhhhhhhc----cCCcEEEEE
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV---EGSID---AGNMLKPEL----SRGELHCIG 178 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~---~~~~~---~~~~L~~~l----e~~~i~vI~ 178 (951)
+.+. ..+.|.....++.+|..+. ...|+||||||+|.+...++. .+..+ ..+.|+..+ .+..+++|+
T Consensus 250 s~f~--~~~~g~~~~~vr~lF~~A~-~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIa 326 (638)
T CHL00176 250 SEFV--EMFVGVGAARVRDLFKKAK-ENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIA 326 (638)
T ss_pred HHHH--HHhhhhhHHHHHHHHHHHh-cCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEE
Confidence 7765 3456666778999999987 456999999999999865432 11222 333444444 346799999
Q ss_pred eecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchh
Q psy14504 179 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 255 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 255 (951)
+||.++ .+|++++| ||+. |.|+.|+.++|..||+.+++... ..++..+..++..+.+|. +++
T Consensus 327 aTN~~~-----~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-----~~~d~~l~~lA~~t~G~s-----gaD 391 (638)
T CHL00176 327 ATNRVD-----ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-----LSPDVSLELIARRTPGFS-----GAD 391 (638)
T ss_pred ecCchH-----hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-----cchhHHHHHHHhcCCCCC-----HHH
Confidence 999998 78999998 8986 99999999999999998877521 123456677777776654 788
Q ss_pred HHHHHHHHHHHhH
Q psy14504 256 AIDLIDEAAAKIK 268 (951)
Q Consensus 256 a~~ll~~a~~~~~ 268 (951)
+..++++|+..+.
T Consensus 392 L~~lvneAal~a~ 404 (638)
T CHL00176 392 LANLLNEAAILTA 404 (638)
T ss_pred HHHHHHHHHHHHH
Confidence 8899998865543
No 99
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=1.8e-18 Score=200.72 Aligned_cols=203 Identities=20% Similarity=0.202 Sum_probs=158.4
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCC---------------
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN--------------- 96 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~--------------- 96 (951)
-|.+||||.+|+++||++..++.|...+...+..|. ||+||+||||||+|+++|+.+.+.....
T Consensus 5 vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C 84 (618)
T PRK14951 5 VLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQAC 84 (618)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHH
Confidence 489999999999999999999999999998887776 8999999999999999999996531100
Q ss_pred ----CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhc
Q psy14504 97 ----SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL 169 (951)
Q Consensus 97 ----~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l 169 (951)
......+++++.+. .. ....++.+++.+.. .++..|++|||+|.|.. +..|.|+..+
T Consensus 85 ~~i~~g~h~D~~eldaas------~~--~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~--------~a~NaLLKtL 148 (618)
T PRK14951 85 RDIDSGRFVDYTELDAAS------NR--GVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTN--------TAFNAMLKTL 148 (618)
T ss_pred HHHHcCCCCceeecCccc------cc--CHHHHHHHHHHHHhCcccCCceEEEEEChhhCCH--------HHHHHHHHhc
Confidence 00112344443221 11 12245666665441 12346999999999954 5678899999
Q ss_pred cC--CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 170 SR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 170 e~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
|. +.+.+|++|+.+. .+.+.+++||..+.|..++.++....|+.++.+ .++.++++++..++..+.+.+
T Consensus 149 EEPP~~~~fIL~Ttd~~-----kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~----egi~ie~~AL~~La~~s~Gsl 219 (618)
T PRK14951 149 EEPPEYLKFVLATTDPQ-----KVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAA----ENVPAEPQALRLLARAARGSM 219 (618)
T ss_pred ccCCCCeEEEEEECCch-----hhhHHHHHhceeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH
Confidence 86 5688888888776 678889999999999999999999999888774 578999999999999998877
Q ss_pred ccCCCchhHHHHHHHHHHH
Q psy14504 248 SDRFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 248 ~~~~~p~~a~~ll~~a~~~ 266 (951)
+++.+++++++..
T Consensus 220 ------R~al~lLdq~ia~ 232 (618)
T PRK14951 220 ------RDALSLTDQAIAF 232 (618)
T ss_pred ------HHHHHHHHHHHHh
Confidence 9999999887765
No 100
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=5.4e-18 Score=203.60 Aligned_cols=204 Identities=20% Similarity=0.184 Sum_probs=158.7
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCCC-------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------- 97 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~~------------- 97 (951)
..|.+||||.+|++||||+.+++.|...+..++..| +||+||+||||||+|++||+.|.+...+..
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~ 82 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALA 82 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHH
Confidence 358899999999999999999999999999888888 689999999999999999999975322110
Q ss_pred ---cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC
Q psy14504 98 ---LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR 171 (951)
Q Consensus 98 ---~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~ 171 (951)
-...+++.++.... .+ ...++.+.+.+. ......|+||||+|.|.. +.+|.|+.+||+
T Consensus 83 ~g~~~~~dv~eidaas~------~~--Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~--------~a~NaLLK~LEE 146 (824)
T PRK07764 83 PGGPGSLDVTEIDAASH------GG--VDDARELRERAFFAPAESRYKIFIIDEAHMVTP--------QGFNALLKIVEE 146 (824)
T ss_pred cCCCCCCcEEEeccccc------CC--HHHHHHHHHHHHhchhcCCceEEEEechhhcCH--------HHHHHHHHHHhC
Confidence 01234444443211 11 123344433332 123456999999999953 678899999986
Q ss_pred --CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhccc
Q psy14504 172 --GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISD 249 (951)
Q Consensus 172 --~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~ 249 (951)
..++||++|+..+ .+.+.|++||..++|..++.++...+|+.+++. .++.++++++..++..+.+.+
T Consensus 147 pP~~~~fIl~tt~~~-----kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~----EGv~id~eal~lLa~~sgGdl-- 215 (824)
T PRK07764 147 PPEHLKFIFATTEPD-----KVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQ----EGVPVEPGVLPLVIRAGGGSV-- 215 (824)
T ss_pred CCCCeEEEEEeCChh-----hhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH--
Confidence 6788888888776 678899999999999999999999999888764 578899999999999998877
Q ss_pred CCCchhHHHHHHHHHHH
Q psy14504 250 RFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 250 ~~~p~~a~~ll~~a~~~ 266 (951)
++++++|++.+..
T Consensus 216 ----R~Al~eLEKLia~ 228 (824)
T PRK07764 216 ----RDSLSVLDQLLAG 228 (824)
T ss_pred ----HHHHHHHHHHHhh
Confidence 8899999987754
No 101
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=2.4e-18 Score=197.83 Aligned_cols=205 Identities=19% Similarity=0.189 Sum_probs=154.2
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCC-CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRS-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPN-------------- 96 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~-~~~iLL~GppGtGKTtla~~la~~l~~~~~~~-------------- 96 (951)
.+|++||||.+|+++||++.+++.|...+..++ ..++||+|||||||||+|+.+|+.+.+...+.
T Consensus 4 ~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 4 ASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred chHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 479999999999999999999999999888765 56778999999999999999999986532110
Q ss_pred CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcE
Q psy14504 97 SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GEL 174 (951)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i 174 (951)
......+++++.... ..+.+.+ .+...+..........|+||||+|.|.. +.++.|+..|+. +.+
T Consensus 84 ~g~hpDv~eId~a~~----~~Id~iR-~L~~~~~~~p~~g~~kVIIIDEad~Lt~--------~a~naLLk~LEEP~~~~ 150 (624)
T PRK14959 84 QGMHVDVVEIDGASN----RGIDDAK-RLKEAIGYAPMEGRYKVFIIDEAHMLTR--------EAFNALLKTLEEPPARV 150 (624)
T ss_pred cCCCCceEEEecccc----cCHHHHH-HHHHHHHhhhhcCCceEEEEEChHhCCH--------HHHHHHHHHhhccCCCE
Confidence 011223555543211 1111111 2222333222234457999999999943 567889999975 678
Q ss_pred EEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCch
Q psy14504 175 HCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 254 (951)
Q Consensus 175 ~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 254 (951)
++|++|+... .+.+.+++||..+.|++++.++...+|+.++.. .++.++++++..++..+.+.+ +
T Consensus 151 ifILaTt~~~-----kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~----egi~id~eal~lIA~~s~Gdl------R 215 (624)
T PRK14959 151 TFVLATTEPH-----KFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGR----EGVDYDPAAVRLIARRAAGSV------R 215 (624)
T ss_pred EEEEecCChh-----hhhHHHHhhhhccccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------H
Confidence 8888888776 677889999999999999999999999887764 468899999999999998877 8
Q ss_pred hHHHHHHHHH
Q psy14504 255 KAIDLIDEAA 264 (951)
Q Consensus 255 ~a~~ll~~a~ 264 (951)
++++++++++
T Consensus 216 ~Al~lLeqll 225 (624)
T PRK14959 216 DSMSLLGQVL 225 (624)
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 102
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=6e-18 Score=192.78 Aligned_cols=205 Identities=22% Similarity=0.233 Sum_probs=160.6
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN-------------- 96 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~-------------- 96 (951)
..|.+||||.+|+++|||+..++.|...+..+..+|+ ||+||+|+|||++|+++|+.+.+...+.
T Consensus 2 ~~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~ 81 (535)
T PRK08451 2 QALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSAL 81 (535)
T ss_pred ccHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 3589999999999999999999999999988877776 8999999999999999999986533221
Q ss_pred CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 97 SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
...+..++.++.+. .. ....++.++..+.. .+...|++|||+|.|. .++++.|+..+|.
T Consensus 82 ~~~h~dv~eldaas------~~--gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt--------~~A~NALLK~LEEpp 145 (535)
T PRK08451 82 ENRHIDIIEMDAAS------NR--GIDDIRELIEQTKYKPSMARFKIFIIDEVHMLT--------KEAFNALLKTLEEPP 145 (535)
T ss_pred hcCCCeEEEecccc------cc--CHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHHhhcC
Confidence 11233444444211 11 12345666655331 1334699999999994 3678889999985
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
..+++|.+|+.+. .+.+++++||..++|.+++.++....++.++.. .++.++++++..++..+++.+
T Consensus 146 ~~t~FIL~ttd~~-----kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~----EGi~i~~~Al~~Ia~~s~Gdl---- 212 (535)
T PRK08451 146 SYVKFILATTDPL-----KLPATILSRTQHFRFKQIPQNSIISHLKTILEK----EGVSYEPEALEILARSGNGSL---- 212 (535)
T ss_pred CceEEEEEECChh-----hCchHHHhhceeEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcH----
Confidence 5678888887765 788999999999999999999999999888774 578899999999999998877
Q ss_pred CchhHHHHHHHHHHHh
Q psy14504 252 MPDKAIDLIDEAAAKI 267 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~~ 267 (951)
+++..+++.++...
T Consensus 213 --R~alnlLdqai~~~ 226 (535)
T PRK08451 213 --RDTLTLLDQAIIYC 226 (535)
T ss_pred --HHHHHHHHHHHHhc
Confidence 99999999888654
No 103
>KOG0727|consensus
Probab=99.78 E-value=9e-19 Score=171.67 Aligned_cols=178 Identities=20% Similarity=0.285 Sum_probs=140.0
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEE
Q psy14504 62 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIII 141 (951)
Q Consensus 62 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL 141 (951)
-.+++++|+|||||||||+||+++|+.. ...++.+..+.+. .+|.|+....++.+|.-+++ +.|+|+
T Consensus 186 idpprgvllygppg~gktml~kava~~t----------~a~firvvgsefv--qkylgegprmvrdvfrlake-napsii 252 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHT----------TAAFIRVVGSEFV--QKYLGEGPRMVRDVFRLAKE-NAPSII 252 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhcc----------chheeeeccHHHH--HHHhccCcHHHHHHHHHHhc-cCCcEE
Confidence 4678899999999999999999999876 6788888888887 78999999999999999985 459999
Q ss_pred EEecccccccCCCC---CCchhHHhhhhhhcc-------CCcEEEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCC
Q psy14504 142 FIDELHTMIGTGKV---EGSIDAGNMLKPELS-------RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPD 208 (951)
Q Consensus 142 ~iDEid~l~~~~~~---~~~~~~~~~L~~~le-------~~~i~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~ 208 (951)
||||+|.+...+-. +...+++..|..++. ...+.+|.+||+.+ .+||+++| |+++ |+||.|+
T Consensus 253 fideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnrad-----tldpallrpgrldrkiefplpd 327 (408)
T KOG0727|consen 253 FIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRAD-----TLDPALLRPGRLDRKIEFPLPD 327 (408)
T ss_pred EeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCccc-----ccCHhhcCCccccccccCCCCc
Confidence 99999999754432 234567777777773 35799999999998 89999999 9997 9999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHh
Q psy14504 209 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 209 ~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
..++.-++..+..+......+++.+- +.. ++...+.++..++++|...+
T Consensus 328 rrqkrlvf~titskm~ls~~vdle~~-----v~r-----pdkis~adi~aicqeagm~a 376 (408)
T KOG0727|consen 328 RRQKRLVFSTITSKMNLSDEVDLEDL-----VAR-----PDKISGADINAICQEAGMLA 376 (408)
T ss_pred hhhhhhhHHhhhhcccCCcccCHHHH-----hcC-----ccccchhhHHHHHHHHhHHH
Confidence 99999999998887655544443221 111 33334566677777776544
No 104
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=2.2e-18 Score=198.62 Aligned_cols=204 Identities=20% Similarity=0.230 Sum_probs=158.7
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCCC-------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------- 97 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~~------------- 97 (951)
..|.+||||++|+++||++..++.|...+..++..+ +||+||+||||||+|+++|+.+.+......
T Consensus 4 ~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 4 QVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred hhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 358999999999999999999999999988776555 699999999999999999999865321100
Q ss_pred -cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 98 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 98 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
.....+++++.+. ......++.++..+. ......|+||||+|.|. ....+.|+..|+.
T Consensus 84 ~g~~~DvlEidaAs--------~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls--------~~A~NALLKtLEEPp 147 (709)
T PRK08691 84 AGRYVDLLEIDAAS--------NTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLS--------KSAFNAMLKTLEEPP 147 (709)
T ss_pred ccCccceEEEeccc--------cCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccC--------HHHHHHHHHHHHhCC
Confidence 0011334444321 111234666665543 12345799999999884 3567788888874
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
+.+.+|++|+... .+.+.+++||..+.|..++.++....|+.++.. .++.++++++..+++.+.+.+
T Consensus 148 ~~v~fILaTtd~~-----kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~k----Egi~id~eAL~~Ia~~A~Gsl---- 214 (709)
T PRK08691 148 EHVKFILATTDPH-----KVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDS----EKIAYEPPALQLLGRAAAGSM---- 214 (709)
T ss_pred CCcEEEEEeCCcc-----ccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHhCCCH----
Confidence 6788888888776 788999999999999999999999999988874 578999999999999998877
Q ss_pred CchhHHHHHHHHHHH
Q psy14504 252 MPDKAIDLIDEAAAK 266 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~ 266 (951)
++++++++.++..
T Consensus 215 --RdAlnLLDqaia~ 227 (709)
T PRK08691 215 --RDALSLLDQAIAL 227 (709)
T ss_pred --HHHHHHHHHHHHh
Confidence 9999999988765
No 105
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.78 E-value=2e-18 Score=203.50 Aligned_cols=226 Identities=19% Similarity=0.276 Sum_probs=178.5
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
..++|++.+++.+...+...... ..++||+|++||||+++|++|++.....+.+|+.+||..+......+.+|
T Consensus 196 ~~liG~s~~~~~~~~~~~~~a~~-------~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~~~~lf 268 (534)
T TIGR01817 196 DGIIGKSPAMRQVVDQARVVARS-------NSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLLESELF 268 (534)
T ss_pred CceEECCHHHHHHHHHHHHHhCc-------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHHHHHHc
Confidence 57889999999999988876521 23699999999999999999999987778899999999987766667888
Q ss_pred CCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhh
Q psy14504 520 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 598 (951)
Q Consensus 520 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 598 (951)
|+..| +.|.... -...+..+.+++||||||+.+++.+|..|+.+++++.+....+......++.+|+||+.......
T Consensus 269 g~~~~~~~~~~~~--~~g~~~~a~~GtL~ldei~~L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~s~~~l~~~~ 346 (534)
T TIGR01817 269 GHEKGAFTGAIAQ--RKGRFELADGGTLFLDEIGEISPAFQAKLLRVLQEGEFERVGGNRTLKVDVRLVAATNRDLEEAV 346 (534)
T ss_pred CCCCCccCCCCcC--CCCcccccCCCeEEEechhhCCHHHHHHHHHHHhcCcEEECCCCceEeecEEEEEeCCCCHHHHH
Confidence 87654 2332211 12234556789999999999999999999999999988765444444457889999987654321
Q ss_pred hhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCC--hhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Q psy14504 599 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN--RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 675 (951)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 675 (951)
. .+.|+++|++|++. .|.+|||. .+|+..++..++.++..+. +..+.+++++++.|.
T Consensus 347 ~-----------------~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~---~~~~~~s~~a~~~L~ 406 (534)
T TIGR01817 347 A-----------------KGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNREN---GRPLTITPSAIRVLM 406 (534)
T ss_pred H-----------------cCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHc---CCCCCCCHHHHHHHH
Confidence 1 56799999999965 78899998 5899999999998876543 333789999999999
Q ss_pred HhcccccccccccccchHHHHHHH
Q psy14504 676 NIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 676 ~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
. |+|+.+++.+... +++++
T Consensus 407 ~--~~WPGNvrEL~~v---~~~a~ 425 (534)
T TIGR01817 407 S--CKWPGNVRELENC---LERTA 425 (534)
T ss_pred h--CCCCChHHHHHHH---HHHHH
Confidence 8 8899889998888 66665
No 106
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.77 E-value=1.5e-17 Score=178.75 Aligned_cols=213 Identities=18% Similarity=0.171 Sum_probs=155.1
Q ss_pred CccccHHHHHHHHHHHH---------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 45 PVIGRDDEIRRAIQVLQ---------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~---------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
+++|.+.+.+++..+.. .....+++|+||||||||++|+++|+.+..... ....+++.++..
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~---~~~~~~v~v~~~ 99 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGY---VRKGHLVSVTRD 99 (284)
T ss_pred hccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCC---cccceEEEecHH
Confidence 68999887777654321 012348999999999999999999998854321 123468888887
Q ss_pred hhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCC-CCCchhHHhhhhhhccC--CcEEEEEeecchHHH
Q psy14504 110 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK-VEGSIDAGNMLKPELSR--GELHCIGATTLNEYR 186 (951)
Q Consensus 110 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~-~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~ 186 (951)
.+. +.+.|+.+.++..+|+.+. ++||||||++.|.+.+. ...+.++++.|...|+. +.+++|++++.+.+.
T Consensus 100 ~l~--~~~~g~~~~~~~~~~~~a~----~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~ 173 (284)
T TIGR02880 100 DLV--GQYIGHTAPKTKEILKRAM----GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMD 173 (284)
T ss_pred HHh--HhhcccchHHHHHHHHHcc----CcEEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 776 3577877777888888764 45999999999864322 22345677888888864 478999999988777
Q ss_pred HhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc--ccCCCchhHHHHHHHH
Q psy14504 187 QYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI--SDRFMPDKAIDLIDEA 263 (951)
Q Consensus 187 ~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~--~~~~~p~~a~~ll~~a 263 (951)
.++.++|+|.+||.. |.|++++.+++..|++.++++. +..++++++..+..+..... +.....+.+.++++.+
T Consensus 174 ~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~----~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~ 249 (284)
T TIGR02880 174 SFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQ----QYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRA 249 (284)
T ss_pred HHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHh----ccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHH
Confidence 788899999999985 9999999999999999988863 45678888877766543221 1222335566777777
Q ss_pred HHHhHHh
Q psy14504 264 AAKIKIE 270 (951)
Q Consensus 264 ~~~~~~~ 270 (951)
+.....+
T Consensus 250 ~~~~~~r 256 (284)
T TIGR02880 250 RLRQANR 256 (284)
T ss_pred HHHHHHH
Confidence 6555443
No 107
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.77 E-value=5e-18 Score=186.34 Aligned_cols=228 Identities=18% Similarity=0.230 Sum_probs=175.3
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.++|.+.+++.+...+.+.... ..++|++|++||||+++|++|+........+|+.+||..+........+|
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~-------~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~~~~lf 78 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPL-------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHHHHHHc
Confidence 46889999999999988876521 12699999999999999999998876667899999999986554456778
Q ss_pred CCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhh
Q psy14504 520 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 598 (951)
Q Consensus 520 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 598 (951)
|...+ +.|.... ....+..+.+++||||||+.+++.+|..|+.++++|.+....+......++.+|+||+.....+.
T Consensus 79 g~~~~~~~g~~~~--~~g~l~~a~gGtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~s~~~l~~l~ 156 (326)
T PRK11608 79 GHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV 156 (326)
T ss_pred cccccccCCcccc--cCCchhccCCCeEEeCChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCchhHHHHH
Confidence 87644 2333221 12344667789999999999999999999999999887754443333457889999987554332
Q ss_pred hhccccHHHHHHHHHHHHHhccChhHhhccC-cEEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Q psy14504 599 EMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 675 (951)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~-~~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 675 (951)
. .+.|+++|++||. ..|.+|||.+ +|+..++..++.++...+.. .+...+++++++.|.
T Consensus 157 ~-----------------~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~-~~~~~~s~~al~~L~ 218 (326)
T PRK11608 157 A-----------------EGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGL-PLFPGFTERARETLL 218 (326)
T ss_pred H-----------------cCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCC-CCCCCCCHHHHHHHH
Confidence 2 4579999999994 4899999976 79999999988887544322 112479999999999
Q ss_pred HhcccccccccccccchHHHHHHH
Q psy14504 676 NIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 676 ~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
. |+|+.+++.+..+ +++++
T Consensus 219 ~--y~WPGNvrEL~~v---l~~a~ 237 (326)
T PRK11608 219 N--YRWPGNIRELKNV---VERSV 237 (326)
T ss_pred h--CCCCcHHHHHHHH---HHHHH
Confidence 8 8899999999988 77665
No 108
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=5.9e-18 Score=193.53 Aligned_cols=205 Identities=23% Similarity=0.270 Sum_probs=156.7
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN-------------- 96 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~-------------- 96 (951)
.+|.++|||.+|++++||+..++.+...+.....+| +||+||+||||||+|+++|+.+.+.....
T Consensus 4 ~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~ 83 (605)
T PRK05896 4 ITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESIN 83 (605)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHH
Confidence 369999999999999999999999999887765555 78999999999999999999986532110
Q ss_pred CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 97 SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
......++.++.+. ..| ...++.++..+.. ..+..|++|||+|.|.. .+++.|+..|+.
T Consensus 84 ~~~h~DiieIdaas------~ig--Vd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~--------~A~NaLLKtLEEPp 147 (605)
T PRK05896 84 TNQSVDIVELDAAS------NNG--VDEIRNIIDNINYLPTTFKYKVYIIDEAHMLST--------SAWNALLKTLEEPP 147 (605)
T ss_pred cCCCCceEEecccc------ccC--HHHHHHHHHHHHhchhhCCcEEEEEechHhCCH--------HHHHHHHHHHHhCC
Confidence 00112444444321 111 2235555554441 12346999999999843 567889999985
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
+.+++|++|+... .+.+++++||..++|.+|+.++....++.++.+ .++.++++++..++.++.+.+
T Consensus 148 ~~tvfIL~Tt~~~-----KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~k----egi~Is~eal~~La~lS~Gdl---- 214 (605)
T PRK05896 148 KHVVFIFATTEFQ-----KIPLTIISRCQRYNFKKLNNSELQELLKSIAKK----EKIKIEDNAIDKIADLADGSL---- 214 (605)
T ss_pred CcEEEEEECCChH-----hhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCcH----
Confidence 4678888887766 788999999999999999999999999888774 478899999999999998876
Q ss_pred CchhHHHHHHHHHHHh
Q psy14504 252 MPDKAIDLIDEAAAKI 267 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~~ 267 (951)
+++.++++.++...
T Consensus 215 --R~AlnlLekL~~y~ 228 (605)
T PRK05896 215 --RDGLSILDQLSTFK 228 (605)
T ss_pred --HHHHHHHHHHHhhc
Confidence 88999999876543
No 109
>KOG0652|consensus
Probab=99.77 E-value=5.3e-18 Score=167.03 Aligned_cols=198 Identities=21% Similarity=0.282 Sum_probs=148.5
Q ss_pred hcC-CCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEE
Q psy14504 39 RLG-KLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 104 (951)
Q Consensus 39 rp~-~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~ 104 (951)
+|. ..+++=|.++.++.|...+- -.++.++|+|||||||||.+|++.|... +..+.
T Consensus 165 kPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT----------~aTFL 234 (424)
T KOG0652|consen 165 KPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT----------NATFL 234 (424)
T ss_pred CCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc----------cchHH
Confidence 343 57788899999988887432 3667899999999999999999999876 55555
Q ss_pred EEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCC---CCCchhHHhhhhhhc-------cCCcE
Q psy14504 105 LLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK---VEGSIDAGNMLKPEL-------SRGEL 174 (951)
Q Consensus 105 ~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~---~~~~~~~~~~L~~~l-------e~~~i 174 (951)
.+-.-.++ ..|+|+..+-++..|.-+++ ..|+|+||||+|.+...+. ..|..+++..++.++ ....+
T Consensus 235 KLAgPQLV--QMfIGdGAkLVRDAFaLAKE-kaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~v 311 (424)
T KOG0652|consen 235 KLAGPQLV--QMFIGDGAKLVRDAFALAKE-KAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRV 311 (424)
T ss_pred HhcchHHH--hhhhcchHHHHHHHHHHhhc-cCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccce
Confidence 44444444 45789999999999999984 4599999999999865442 245566777776666 34689
Q ss_pred EEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 175 HCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 175 ~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
.+|++||+.+ -+||+|+| |+++ |+||.|+.+.|.+|++-..++...+..+.+ +.+++.++.|-
T Consensus 312 KviAATNRvD-----iLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~~DvNf-----eELaRsTddFN---- 377 (424)
T KOG0652|consen 312 KVIAATNRVD-----ILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVSDDVNF-----EELARSTDDFN---- 377 (424)
T ss_pred EEEeeccccc-----ccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCCCCCCH-----HHHhhcccccC----
Confidence 9999999998 78999999 9997 999999999999999987776554444433 45555555443
Q ss_pred CchhHHHHHHHHH
Q psy14504 252 MPDKAIDLIDEAA 264 (951)
Q Consensus 252 ~p~~a~~ll~~a~ 264 (951)
+.....++.+|.
T Consensus 378 -GAQcKAVcVEAG 389 (424)
T KOG0652|consen 378 -GAQCKAVCVEAG 389 (424)
T ss_pred -chhheeeehhhh
Confidence 444444444443
No 110
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2.2e-17 Score=191.48 Aligned_cols=203 Identities=19% Similarity=0.220 Sum_probs=158.6
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCC---C-----------
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN---S----------- 97 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~---~----------- 97 (951)
.|++||||.+|+++||++..++.+...+...+..|. ||+|||||||||+|+.+|+.+.+..... .
T Consensus 5 ~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 5 VLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDS 84 (527)
T ss_pred HHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhc
Confidence 489999999999999999999999999988777775 8999999999999999999986532110 0
Q ss_pred cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--C
Q psy14504 98 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 172 (951)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~ 172 (951)
.....++.++.+. . .....++.++..+.. .+...|+||||+|.|.. .++|.|+..++. +
T Consensus 85 ~~~~d~~ei~~~~------~--~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~--------~a~naLLK~LEepp~ 148 (527)
T PRK14969 85 GRFVDLIEVDAAS------N--TQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSK--------SAFNAMLKTLEEPPE 148 (527)
T ss_pred CCCCceeEeeccc------c--CCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCH--------HHHHHHHHHHhCCCC
Confidence 0111344444321 1 112346666666542 23356999999999943 567889999986 5
Q ss_pred cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 173 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
.+++|++|+.+. .+.+.+++||..++|.+++.++....+..++.+ .++.++++++..++..+.+.+
T Consensus 149 ~~~fIL~t~d~~-----kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~----egi~~~~~al~~la~~s~Gsl----- 214 (527)
T PRK14969 149 HVKFILATTDPQ-----KIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQ----ENIPFDATALQLLARAAAGSM----- 214 (527)
T ss_pred CEEEEEEeCChh-----hCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 788898888877 677789999999999999999999998887764 478899999999999998876
Q ss_pred chhHHHHHHHHHHH
Q psy14504 253 PDKAIDLIDEAAAK 266 (951)
Q Consensus 253 p~~a~~ll~~a~~~ 266 (951)
++++++++.++..
T Consensus 215 -r~al~lldqai~~ 227 (527)
T PRK14969 215 -RDALSLLDQAIAY 227 (527)
T ss_pred -HHHHHHHHHHHHh
Confidence 9999999988765
No 111
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.77 E-value=8.8e-18 Score=185.76 Aligned_cols=200 Identities=18% Similarity=0.236 Sum_probs=147.6
Q ss_pred hcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEE-EcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 31 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVL-IGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 31 ~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL-~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
-..|.+||||.+|++++|++...+.+..++..+..++++| +||||+|||++|+++++.+ +.+++.++++
T Consensus 8 ~~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~----------~~~~~~i~~~ 77 (316)
T PHA02544 8 EFMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEV----------GAEVLFVNGS 77 (316)
T ss_pred CCcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CccceEeccC
Confidence 3579999999999999999999999999988777677766 8999999999999999987 5567777664
Q ss_pred hhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHH
Q psy14504 110 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQ 187 (951)
Q Consensus 110 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~ 187 (951)
. . . .......+............+.||+|||+|.+.. .+.++.|+.+++. +.+.+|++||...
T Consensus 78 ~-~---~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~~~~~L~~~le~~~~~~~~Ilt~n~~~--- 142 (316)
T PHA02544 78 D-C---R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------ADAQRHLRSFMEAYSKNCSFIITANNKN--- 142 (316)
T ss_pred c-c---c-HHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HHHHHHHHHHHHhcCCCceEEEEcCChh---
Confidence 4 1 1 1222222333222221123467999999998832 2345567777763 5678888998776
Q ss_pred hhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhh---hhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q psy14504 188 YIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYE---VHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 263 (951)
Q Consensus 188 ~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~---~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 263 (951)
.+.+++++||..+.|+.|+.+++..+++.+..+.. ...++.++++++..++..+.+.. +.++..++..
T Consensus 143 --~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~------r~~l~~l~~~ 213 (316)
T PHA02544 143 --GIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDF------RRTINELQRY 213 (316)
T ss_pred --hchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCH------HHHHHHHHHH
Confidence 78899999999999999999999998877655432 24578899999998888766544 4555555543
No 112
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.77 E-value=6.3e-18 Score=194.21 Aligned_cols=225 Identities=17% Similarity=0.216 Sum_probs=172.9
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHH--------hccCCCceEEeccccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSAC--------IFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~--------l~~~~~~~~~~~~~~~~~ 511 (951)
..++|++.+++.+...+...... ..++|++|++||||+.+|++|++. ......+|+.+||..+.+
T Consensus 219 ~~iiG~S~~m~~~~~~i~~~A~s-------~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e 291 (538)
T PRK15424 219 GDLLGQSPQMEQVRQTILLYARS-------SAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAE 291 (538)
T ss_pred hheeeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCCh
Confidence 45889999999999988765422 136999999999999999999998 556678999999999887
Q ss_pred hhchhcccCCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEec
Q psy14504 512 KHSISRLIGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 590 (951)
Q Consensus 512 ~~~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 590 (951)
....+.+||+..| +.|.... .-...+..+.+++||||||+.+++..|..|+.+|+++.+....+...-..++.+|++|
T Consensus 292 ~lleseLFG~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~kLl~~L~e~~~~r~G~~~~~~~dvRiIaat 370 (538)
T PRK15424 292 SLLEAELFGYEEGAFTGSRRG-GRAGLFEIAHGGTLFLDEIGEMPLPLQTRLLRVLEEKEVTRVGGHQPVPVDVRVISAT 370 (538)
T ss_pred hhHHHHhcCCccccccCcccc-ccCCchhccCCCEEEEcChHhCCHHHHHHHHhhhhcCeEEecCCCceeccceEEEEec
Confidence 7677889998665 3343221 1123456677899999999999999999999999999887655444444678899999
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccc
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKIS 667 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~ 667 (951)
|........ .+.|+++|++|+.. .|.+|||.+ +|+..++..++.++.... + ..++
T Consensus 371 ~~~L~~~v~-----------------~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---~--~~~~ 428 (538)
T PRK15424 371 HCDLEEDVR-----------------QGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAAL---S--APFS 428 (538)
T ss_pred CCCHHHHHh-----------------cccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHc---C--CCCC
Confidence 976543322 45799999999965 889999976 789999998888764433 2 2355
Q ss_pred hHHH-------HHHHHhcccccccccccccchHHHHHHH
Q psy14504 668 KAAL-------KKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 668 ~~~~-------~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
++++ +.|.. |+|+.++|.+... +++++
T Consensus 429 ~~a~~~~~~a~~~L~~--y~WPGNvREL~nv---ier~~ 462 (538)
T PRK15424 429 AALRQGLQQCETLLLH--YDWPGNVRELRNL---MERLA 462 (538)
T ss_pred HHHHHhhHHHHHHHHh--CCCCchHHHHHHH---HHHHH
Confidence 5554 66666 8999999999998 66655
No 113
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.77 E-value=6.9e-18 Score=194.34 Aligned_cols=225 Identities=18% Similarity=0.246 Sum_probs=176.1
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.++|++.+++.+...+...... ..++|+.|++||||+++|++|++.......+|+.+||..+.+....+.+|
T Consensus 212 ~~iiG~S~~m~~~~~~i~~~A~~-------~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lleseLF 284 (526)
T TIGR02329 212 DDLLGASAPMEQVRALVRLYARS-------DATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLEAELF 284 (526)
T ss_pred hheeeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHHHHhc
Confidence 45889999999999988765422 13699999999999999999999887778899999999988766677899
Q ss_pred CCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhh
Q psy14504 520 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 598 (951)
Q Consensus 520 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 598 (951)
|+..| +.|.... .....+..+.+++||||||+.+++.+|..|+.+|+++.+....+...-..++.+|++|+.......
T Consensus 285 G~~~gaftga~~~-~~~Gl~e~A~gGTLfLdeI~~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvRiIaat~~~l~~~v 363 (526)
T TIGR02329 285 GYEEGAFTGARRG-GRTGLIEAAHRGTLFLDEIGEMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVRVVAATHCALTTAV 363 (526)
T ss_pred CCccccccccccc-ccccchhhcCCceEEecChHhCCHHHHHHHHHHHhcCcEEecCCCceeeecceEEeccCCCHHHHh
Confidence 98665 3343211 122455667789999999999999999999999999888754443344457789999997664432
Q ss_pred hhccccHHHHHHHHHHHHHhccChhHhhccC-cEEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHH--
Q psy14504 599 EMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKK-- 673 (951)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~-~~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~-- 673 (951)
. .+.|+++|++|++ ..|.+|||.+ +|+..++..++.++.... + +.+++++++.
T Consensus 364 ~-----------------~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~---~--~~~~~~a~~~~~ 421 (526)
T TIGR02329 364 Q-----------------QGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAAL---R--LPDSEAAAQVLA 421 (526)
T ss_pred h-----------------hcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHc---C--CCCCHHHHHHhH
Confidence 2 4579999999996 4899999977 799999999998875432 3 4588888887
Q ss_pred -----HHHhcccccccccccccchHHHHHHH
Q psy14504 674 -----ISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 674 -----L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
|.. |+|+.+++.+... +++++
T Consensus 422 ~~~~~L~~--y~WPGNvrEL~nv---ier~~ 447 (526)
T TIGR02329 422 GVADPLQR--YPWPGNVRELRNL---VERLA 447 (526)
T ss_pred HHHHHHHh--CCCCchHHHHHHH---HHHHH
Confidence 776 8999999998888 66655
No 114
>KOG0729|consensus
Probab=99.76 E-value=4.4e-18 Score=168.12 Aligned_cols=198 Identities=22% Similarity=0.300 Sum_probs=155.5
Q ss_pred CCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
+..++=|-.+.++.+..++. -..+.++|||||||||||..|+++|++. +.-++.+-.
T Consensus 175 ty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrt----------dacfirvig 244 (435)
T KOG0729|consen 175 TYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRT----------DACFIRVIG 244 (435)
T ss_pred ccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhccc----------CceEEeehh
Confidence 56677777788888877654 2557889999999999999999999987 778888888
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC---CCchhHHhhhhhhc-------cCCcEEEEE
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV---EGSIDAGNMLKPEL-------SRGELHCIG 178 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~---~~~~~~~~~L~~~l-------e~~~i~vI~ 178 (951)
+.++ .+|+|+....++.+|+-|+ ..+-||+|+||+|.+.+++-. .+..+++..++.++ .+|.+.++.
T Consensus 245 selv--qkyvgegarmvrelf~mar-tkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlm 321 (435)
T KOG0729|consen 245 SELV--QKYVGEGARMVRELFEMAR-TKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLM 321 (435)
T ss_pred HHHH--HHHhhhhHHHHHHHHHHhc-ccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEe
Confidence 8888 7899999999999999997 556799999999999776532 33456777777666 368999999
Q ss_pred eecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchh
Q psy14504 179 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 255 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 255 (951)
+||+++ .+||+|+| |+++ ++|..|+.+-|..|++-..+......++. .+.++++|.... +.+
T Consensus 322 atnrpd-----tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsverdir-----~ellarlcpnst-----gae 386 (435)
T KOG0729|consen 322 ATNRPD-----TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVERDIR-----FELLARLCPNST-----GAE 386 (435)
T ss_pred ecCCCC-----CcCHhhcCCcccccceeccCCcccccceeEEEeccccccccchh-----HHHHHhhCCCCc-----chH
Confidence 999999 89999999 9997 99999999999999986665433322222 245666665433 566
Q ss_pred HHHHHHHHHHHh
Q psy14504 256 AIDLIDEAAAKI 267 (951)
Q Consensus 256 a~~ll~~a~~~~ 267 (951)
+.+++.+|...+
T Consensus 387 irsvcteagmfa 398 (435)
T KOG0729|consen 387 IRSVCTEAGMFA 398 (435)
T ss_pred HHHHHHHhhHHH
Confidence 777777765443
No 115
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.76 E-value=5.9e-18 Score=183.98 Aligned_cols=230 Identities=17% Similarity=0.265 Sum_probs=177.4
Q ss_pred HHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-CCCceEEeccccccchhc
Q psy14504 436 NLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-NEESIIRIDMSEFIEKHS 514 (951)
Q Consensus 436 ~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~-~~~~~~~~~~~~~~~~~~ 514 (951)
......+||.+...+.+.+.++... |.. .++|+.|++||||+.+|++|+..... ...+|+++||..|.+...
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~~a-----p~~--~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~ 146 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKAYA-----PSG--LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQ 146 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHhhC-----CCC--CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHH
Confidence 3345678999999999999888622 111 26999999999999999999966655 588999999999999988
Q ss_pred hhcccCCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCC
Q psy14504 515 ISRLIGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG 593 (951)
Q Consensus 515 ~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~ 593 (951)
.+.+||+..| +.|.... -...+..+.+++||+|||..+++..|..|+.+||+|.++.-.+......++.+|++||..
T Consensus 147 ~~eLFG~~kGaftGa~~~--k~Glfe~A~GGtLfLDEI~~LP~~~Q~kLl~~le~g~~~rvG~~~~~~~dVRli~AT~~~ 224 (403)
T COG1221 147 EAELFGHEKGAFTGAQGG--KAGLFEQANGGTLFLDEIHRLPPEGQEKLLRVLEEGEYRRVGGSQPRPVDVRLICATTED 224 (403)
T ss_pred HHHHhccccceeecccCC--cCchheecCCCEEehhhhhhCCHhHHHHHHHHHHcCceEecCCCCCcCCCceeeeccccC
Confidence 8889999877 6674332 345678888999999999999999999999999999999766666667889999999975
Q ss_pred chhhhhhccccHHHHHHHHHHHHHhccChhHhh-ccCcEEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCcccc-chH
Q psy14504 594 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN-RIDDIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKI-SKA 669 (951)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~-R~~~~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~-~~~ 669 (951)
.... +..+ .+|+. |+..+|.+|||.+ +|+...++.++..+..+ .+..+.. +++
T Consensus 225 l~~~------------------~~~g--~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~---l~~~~~~~~~~ 281 (403)
T COG1221 225 LEEA------------------VLAG--ADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARR---LGLPLSVDSPE 281 (403)
T ss_pred HHHH------------------HHhh--cchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHH---cCCCCCCCCHH
Confidence 5321 1111 47777 6677999999977 56666666666555544 4444433 358
Q ss_pred HHHHHHHhcccccccccccccchHHHHHHHHhh
Q psy14504 670 ALKKISNIGFDLIYGARDVHGCKKSLSILLKKI 702 (951)
Q Consensus 670 ~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~ 702 (951)
++..|.. |+|+.++|.+... +++.+...
T Consensus 282 a~~~L~~--y~~pGNirELkN~---Ve~~~~~~ 309 (403)
T COG1221 282 ALRALLA--YDWPGNIRELKNL---VERAVAQA 309 (403)
T ss_pred HHHHHHh--CCCCCcHHHHHHH---HHHHHHHh
Confidence 9999988 8999999999888 66665433
No 116
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=1.4e-17 Score=193.98 Aligned_cols=204 Identities=24% Similarity=0.286 Sum_probs=159.0
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCC-----CC---------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEV-----PN--------- 96 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~-----~~--------- 96 (951)
+.|.+||||.+|+++|||+..++.|...+...+..| +||+||+||||||+|+++|+.+.+... |.
T Consensus 12 ~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~ 91 (598)
T PRK09111 12 RVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEH 91 (598)
T ss_pred hhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHH
Confidence 569999999999999999999999999888776664 899999999999999999999865321 10
Q ss_pred -----CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhh
Q psy14504 97 -----SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE 168 (951)
Q Consensus 97 -----~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~ 168 (951)
......++.++... ..| ...++.+++.+. ......|+||||+|.|. ....+.|+..
T Consensus 92 C~~i~~g~h~Dv~e~~a~s------~~g--vd~IReIie~~~~~P~~a~~KVvIIDEad~Ls--------~~a~naLLKt 155 (598)
T PRK09111 92 CQAIMEGRHVDVLEMDAAS------HTG--VDDIREIIESVRYRPVSARYKVYIIDEVHMLS--------TAAFNALLKT 155 (598)
T ss_pred HHHHhcCCCCceEEecccc------cCC--HHHHHHHHHHHHhchhcCCcEEEEEEChHhCC--------HHHHHHHHHH
Confidence 01122344444321 111 234666666554 12345699999999994 3567889999
Q ss_pred ccC--CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q psy14504 169 LSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 246 (951)
Q Consensus 169 le~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 246 (951)
|+. ..+++|++|+... .+.+.+++||..+.|..++.++....++.++++ .++.++++++..++..+.+.
T Consensus 156 LEePp~~~~fIl~tte~~-----kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~k----egi~i~~eAl~lIa~~a~Gd 226 (598)
T PRK09111 156 LEEPPPHVKFIFATTEIR-----KVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAK----EGVEVEDEALALIARAAEGS 226 (598)
T ss_pred HHhCCCCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCC
Confidence 985 5688888888776 677889999999999999999999999888874 57889999999999999887
Q ss_pred cccCCCchhHHHHHHHHHHH
Q psy14504 247 ISDRFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 247 ~~~~~~p~~a~~ll~~a~~~ 266 (951)
. +++.+++++++..
T Consensus 227 l------r~al~~Ldkli~~ 240 (598)
T PRK09111 227 V------RDGLSLLDQAIAH 240 (598)
T ss_pred H------HHHHHHHHHHHhh
Confidence 7 8999999887655
No 117
>PRK04195 replication factor C large subunit; Provisional
Probab=99.76 E-value=5.5e-18 Score=196.66 Aligned_cols=194 Identities=19% Similarity=0.288 Sum_probs=151.0
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHc----CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQR----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 107 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~----~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 107 (951)
.+|++||||.+|++++|++..++.+..++.. ...+++||+|||||||||+|+++|+.+ +..++.++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el----------~~~~ieln 71 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDY----------GWEVIELN 71 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEEc
Confidence 4799999999999999999999999888763 226789999999999999999999998 77888887
Q ss_pred hhhhhcCccccccHHHHHHHHHHHHHhc-----CCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecc
Q psy14504 108 IALLLAGTKYRGEFEDRLKKILKEISNN-----QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTL 182 (951)
Q Consensus 108 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~-----~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~ 182 (951)
.++... ...+..++..+... ..+.||+|||+|.|.... .....+.|..+++.....+|++||.
T Consensus 72 asd~r~--------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~----d~~~~~aL~~~l~~~~~~iIli~n~ 139 (482)
T PRK04195 72 ASDQRT--------ADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE----DRGGARAILELIKKAKQPIILTAND 139 (482)
T ss_pred cccccc--------HHHHHHHHHHhhccCcccCCCCeEEEEecCccccccc----chhHHHHHHHHHHcCCCCEEEeccC
Confidence 654321 11344444443311 246799999999986532 1234556777777777778888887
Q ss_pred hHHHHhhhcCH-HHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHH
Q psy14504 183 NEYRQYIEKDA-AFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 261 (951)
Q Consensus 183 ~~~~~~~~~~~-~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 261 (951)
.. .+.+ .+++|+..|.|++|+..++..+|+.++.. .++.++++++..++..+.+.+ +.++..++
T Consensus 140 ~~-----~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~----egi~i~~eaL~~Ia~~s~GDl------R~ain~Lq 204 (482)
T PRK04195 140 PY-----DPSLRELRNACLMIEFKRLSTRSIVPVLKRICRK----EGIECDDEALKEIAERSGGDL------RSAINDLQ 204 (482)
T ss_pred cc-----ccchhhHhccceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHH
Confidence 64 5555 78889999999999999999999988874 578899999999999998877 66776666
Q ss_pred H
Q psy14504 262 E 262 (951)
Q Consensus 262 ~ 262 (951)
.
T Consensus 205 ~ 205 (482)
T PRK04195 205 A 205 (482)
T ss_pred H
Confidence 5
No 118
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.76 E-value=1.7e-17 Score=186.14 Aligned_cols=202 Identities=23% Similarity=0.323 Sum_probs=151.4
Q ss_pred hcCCCCCccccHHHHHHHHHHHHc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~~-------------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
..-+++++.|.++.++.+...+.. ..+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 117 p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l----------~~~~~~ 186 (364)
T TIGR01242 117 PNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET----------NATFIR 186 (364)
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC----------CCCEEe
Confidence 445778999999999888876531 346679999999999999999999988 667777
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC---CchhHHhhhhhhc---c----CCcEE
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSIDAGNMLKPEL---S----RGELH 175 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~~~~~L~~~l---e----~~~i~ 175 (951)
+..+.+. ..+.|+....++.+|..+. ...|+||||||+|.+...+... +....+..+..++ + .+.+.
T Consensus 187 v~~~~l~--~~~~g~~~~~i~~~f~~a~-~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~ 263 (364)
T TIGR01242 187 VVGSELV--RKYIGEGARLVREIFELAK-EKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVK 263 (364)
T ss_pred cchHHHH--HHhhhHHHHHHHHHHHHHH-hcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 7766665 4577888888889998886 4468999999999997654321 1223333333333 2 46899
Q ss_pred EEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 176 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 176 vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
+|+|||.++ .+++++++ ||+. |+|+.|+.++|.+|++........... ..+..++..+.+|.
T Consensus 264 vI~ttn~~~-----~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~~-----~~~~~la~~t~g~s----- 328 (364)
T TIGR01242 264 VIAATNRPD-----ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAED-----VDLEAIAKMTEGAS----- 328 (364)
T ss_pred EEEecCChh-----hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCcc-----CCHHHHHHHcCCCC-----
Confidence 999999987 79999998 9986 999999999999999987765332211 23566777776654
Q ss_pred chhHHHHHHHHHHHhH
Q psy14504 253 PDKAIDLIDEAAAKIK 268 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~ 268 (951)
+.++..++..|...+.
T Consensus 329 g~dl~~l~~~A~~~a~ 344 (364)
T TIGR01242 329 GADLKAICTEAGMFAI 344 (364)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7788888888776553
No 119
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.76 E-value=1e-17 Score=195.56 Aligned_cols=227 Identities=19% Similarity=0.241 Sum_probs=179.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
..++|++.+++.+...+...... ..++|++|++||||+++|++|+......+.+|+.+||..+.+....+.+|
T Consensus 187 ~~iig~s~~~~~~~~~i~~~a~~-------~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~lf 259 (509)
T PRK05022 187 GEMIGQSPAMQQLKKEIEVVAAS-------DLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESELF 259 (509)
T ss_pred CceeecCHHHHHHHHHHHHHhCC-------CCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHhc
Confidence 56889999999999999875522 12699999999999999999999987778899999999987665567788
Q ss_pred CCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhh
Q psy14504 520 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 598 (951)
Q Consensus 520 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 598 (951)
|+..| +.|.... ....+..+.+++||||||+.+++.+|..|+.+++++.+....+......++.+|++||.......
T Consensus 260 G~~~g~~~ga~~~--~~g~~~~a~gGtL~ldeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~ 337 (509)
T PRK05022 260 GHVKGAFTGAISN--RSGKFELADGGTLFLDEIGELPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVIAATNRDLREEV 337 (509)
T ss_pred CccccccCCCccc--CCcchhhcCCCEEEecChhhCCHHHHHHHHHHHhcCCEeeCCCCcceecceEEEEecCCCHHHHH
Confidence 87654 3333221 11234567789999999999999999999999999887654444344467889999997654332
Q ss_pred hhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Q psy14504 599 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 675 (951)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 675 (951)
. .+.|+++|++|+.. .|.+|||.+ +|+..++..++.++..++... .+.+++++++.|.
T Consensus 338 ~-----------------~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~--~~~~s~~a~~~L~ 398 (509)
T PRK05022 338 R-----------------AGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLR--SLRLSPAAQAALL 398 (509)
T ss_pred H-----------------cCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHHH
Confidence 2 45799999999965 689999976 789999988888876544322 2689999999998
Q ss_pred HhcccccccccccccchHHHHHHH
Q psy14504 676 NIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 676 ~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
. |+|+.+++.+..+ +++++
T Consensus 399 ~--y~WPGNvrEL~~~---i~ra~ 417 (509)
T PRK05022 399 A--YDWPGNVRELEHV---ISRAA 417 (509)
T ss_pred h--CCCCCcHHHHHHH---HHHHH
Confidence 8 8999999999998 77765
No 120
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.7e-17 Score=190.54 Aligned_cols=203 Identities=22% Similarity=0.225 Sum_probs=157.4
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCC-CC------------CCc
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGE-VP------------NSL 98 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~-~~------------~~~ 98 (951)
.|.+||||.+|++++||+..++.|..++......|. ||+|||||||||+|+++|+.+.+.+ .+ ...
T Consensus 3 ~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~ 82 (504)
T PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRG 82 (504)
T ss_pred hHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcC
Confidence 367999999999999999999999999988887777 9999999999999999999986421 11 001
Q ss_pred CCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--Cc
Q psy14504 99 LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GE 173 (951)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~ 173 (951)
....++.++.+. ..+ ...++.+...+. ....+.|+||||+|.+. ...++.|+..++. ..
T Consensus 83 ~h~dv~el~~~~------~~~--vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls--------~~a~naLLk~LEep~~~ 146 (504)
T PRK14963 83 AHPDVLEIDAAS------NNS--VEDVRDLREKVLLAPLRGGRKVYILDEAHMMS--------KSAFNALLKTLEEPPEH 146 (504)
T ss_pred CCCceEEecccc------cCC--HHHHHHHHHHHhhccccCCCeEEEEECccccC--------HHHHHHHHHHHHhCCCC
Confidence 223455555421 111 223455544443 12346799999999873 3567778888876 56
Q ss_pred EEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCc
Q psy14504 174 LHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 253 (951)
Q Consensus 174 i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 253 (951)
+++|.+|+... .+.+.+.+||..++|.+|+.++....++.++++ .++.++++++..++..+++.+
T Consensus 147 t~~Il~t~~~~-----kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~----egi~i~~~Al~~ia~~s~Gdl------ 211 (504)
T PRK14963 147 VIFILATTEPE-----KMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEA----EGREAEPEALQLVARLADGAM------ 211 (504)
T ss_pred EEEEEEcCChh-----hCChHHhcceEEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------
Confidence 78888888776 788999999999999999999999999988874 578899999999999999887
Q ss_pred hhHHHHHHHHHHH
Q psy14504 254 DKAIDLIDEAAAK 266 (951)
Q Consensus 254 ~~a~~ll~~a~~~ 266 (951)
+++.++++.++..
T Consensus 212 R~aln~Lekl~~~ 224 (504)
T PRK14963 212 RDAESLLERLLAL 224 (504)
T ss_pred HHHHHHHHHHHhc
Confidence 8999999887653
No 121
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.76 E-value=1.4e-17 Score=184.33 Aligned_cols=190 Identities=23% Similarity=0.294 Sum_probs=142.9
Q ss_pred hHHHHhcCCCCCccccHHHHHHHHHHHH-----cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 34 LTEKARLGKLDPVIGRDDEIRRAIQVLQ-----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 34 l~e~~rp~~l~~lvG~~~~i~~l~~~l~-----~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
+..++||.+|++++|++..++.+...+. .....++||+||||||||++|+++|+.+ +..+...+.
T Consensus 15 ~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l----------~~~~~~~~~ 84 (328)
T PRK00080 15 IERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEM----------GVNIRITSG 84 (328)
T ss_pred hhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHh----------CCCeEEEec
Confidence 4678999999999999999988877664 3445789999999999999999999998 555554443
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC-----------------
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR----------------- 171 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~----------------- 171 (951)
.... ....+..++..+ ..+.||||||+|.+... ..+.|...++.
T Consensus 85 ~~~~--------~~~~l~~~l~~l---~~~~vl~IDEi~~l~~~--------~~e~l~~~~e~~~~~~~l~~~~~~~~~~ 145 (328)
T PRK00080 85 PALE--------KPGDLAAILTNL---EEGDVLFIDEIHRLSPV--------VEEILYPAMEDFRLDIMIGKGPAARSIR 145 (328)
T ss_pred cccc--------ChHHHHHHHHhc---ccCCEEEEecHhhcchH--------HHHHHHHHHHhcceeeeeccCcccccee
Confidence 2221 111344444443 34669999999998542 22334443331
Q ss_pred ---CcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 172 ---GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 172 ---~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
..+.+|++||+.. .+++++++||.. +.|++|+.+++.+|++..... .++.++++++..++..+.++.
T Consensus 146 ~~l~~~~li~at~~~~-----~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~ia~~~~G~p 216 (328)
T PRK00080 146 LDLPPFTLIGATTRAG-----LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI----LGVEIDEEGALEIARRSRGTP 216 (328)
T ss_pred ecCCCceEEeecCCcc-----cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHHcCCCc
Confidence 2367899999887 788999999975 999999999999999987774 478899999999999987754
Q ss_pred ccCCCchhHHHHHHHHHHHh
Q psy14504 248 SDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 248 ~~~~~p~~a~~ll~~a~~~~ 267 (951)
+.+..+++.+...+
T Consensus 217 ------R~a~~~l~~~~~~a 230 (328)
T PRK00080 217 ------RIANRLLRRVRDFA 230 (328)
T ss_pred ------hHHHHHHHHHHHHH
Confidence 88888888765444
No 122
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=2.1e-17 Score=192.95 Aligned_cols=203 Identities=21% Similarity=0.253 Sum_probs=159.0
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCCC--------------
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS-------------- 97 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~~-------------- 97 (951)
.|.++|||.+|++++||+..++.+...+......| +||+||+|||||++|+.+|+.+.+...+..
T Consensus 5 al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 5 ALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITN 84 (559)
T ss_pred HHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhc
Confidence 47899999999999999999999999998877777 578999999999999999999865331110
Q ss_pred cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--C
Q psy14504 98 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 172 (951)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~ 172 (951)
....+++.++.+. +.....++.+...+.. .+...|+||||+|.|. ....+.|+..++. .
T Consensus 85 g~~~dv~eidaas--------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt--------~~a~naLLKtLEepp~ 148 (559)
T PRK05563 85 GSLMDVIEIDAAS--------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS--------TGAFNALLKTLEEPPA 148 (559)
T ss_pred CCCCCeEEeeccc--------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC--------HHHHHHHHHHhcCCCC
Confidence 1123455555421 1123346666666542 2345799999999994 3567788888875 4
Q ss_pred cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 173 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
.+++|.+|+.+. .+.+.+++||..+.|.+|+.++....++.++++ .++.++++++..++..+.+.+
T Consensus 149 ~~ifIlatt~~~-----ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~----egi~i~~~al~~ia~~s~G~~----- 214 (559)
T PRK05563 149 HVIFILATTEPH-----KIPATILSRCQRFDFKRISVEDIVERLKYILDK----EGIEYEDEALRLIARAAEGGM----- 214 (559)
T ss_pred CeEEEEEeCChh-----hCcHHHHhHheEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 678888887776 788999999999999999999999999888874 578899999999999988766
Q ss_pred chhHHHHHHHHHHH
Q psy14504 253 PDKAIDLIDEAAAK 266 (951)
Q Consensus 253 p~~a~~ll~~a~~~ 266 (951)
+++.++++.+...
T Consensus 215 -R~al~~Ldq~~~~ 227 (559)
T PRK05563 215 -RDALSILDQAISF 227 (559)
T ss_pred -HHHHHHHHHHHHh
Confidence 8999999988764
No 123
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.76 E-value=3.1e-17 Score=175.26 Aligned_cols=184 Identities=18% Similarity=0.314 Sum_probs=128.8
Q ss_pred cCCChHHHHHHHHHHHHh-------hhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC----CCceEEeccccc
Q psy14504 441 RVVGQDEAISAVSNAIRR-------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN----EESIIRIDMSEF 509 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~-------~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~----~~~~~~~~~~~~ 509 (951)
.++|++.+++.+...... ...|+..+..+ .+++|+||||||||++|+++|+.++.. ...++.++++++
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~-~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l 85 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQV-LHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADL 85 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCc-ceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHh
Confidence 378999999888765422 23455444433 489999999999999999999987432 235566666554
Q ss_pred cchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccC--------HHHHHHHHHHhhcceeecCCCeEeec
Q psy14504 510 IEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKAN--------SDVFNILLQILDDGRLTDNRGRTINF 581 (951)
Q Consensus 510 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~~ 581 (951)
... |+|... ..+.+.+..+.++||||||+|.+. .++++.|++.|+++ .
T Consensus 86 ~~~------------~~g~~~-~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~-----------~ 141 (261)
T TIGR02881 86 VGE------------YIGHTA-QKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN-----------R 141 (261)
T ss_pred hhh------------hccchH-HHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc-----------C
Confidence 321 444433 344566777778999999999875 46789999999862 2
Q ss_pred CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcC
Q psy14504 582 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMN 661 (951)
Q Consensus 582 ~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~ 661 (951)
.++++|++++..... . ...++|+|.+||+..|.|++++.+++.+|+...+.. .+
T Consensus 142 ~~~~vila~~~~~~~--~-----------------~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~-------~~ 195 (261)
T TIGR02881 142 NEFVLILAGYSDEMD--Y-----------------FLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKE-------RE 195 (261)
T ss_pred CCEEEEecCCcchhH--H-----------------HHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHH-------cC
Confidence 445666665532110 0 123679999999889999999999999998766643 22
Q ss_pred CccccchHHHHHHHHh
Q psy14504 662 MDLKISKAALKKISNI 677 (951)
Q Consensus 662 ~~l~~~~~~~~~L~~~ 677 (951)
..++++++.+|.+.
T Consensus 196 --~~l~~~a~~~l~~~ 209 (261)
T TIGR02881 196 --YKLTEEAKWKLREH 209 (261)
T ss_pred --CccCHHHHHHHHHH
Confidence 56888998888653
No 124
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.76 E-value=6.3e-18 Score=166.11 Aligned_cols=163 Identities=20% Similarity=0.318 Sum_probs=125.0
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCC
Q psy14504 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 521 (951)
Q Consensus 442 v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 521 (951)
++|.+.+++.+.+.++..... + .++|++|++||||+.+|++|++.......+|+.+||+.+........+||.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~------~-~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASS------D-LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTS------T-S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCC------C-CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhhhcc
Confidence 578889999999988876522 1 369999999999999999999988888899999999999887777889998
Q ss_pred CCCC-ccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhh
Q psy14504 522 PPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 600 (951)
Q Consensus 522 ~~~~-~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 600 (951)
..+. .|.... -...+..+.+++||||||+.+++.+|..|+++|+++.+....+......++.||+||+.+...+..
T Consensus 74 ~~~~~~~~~~~--~~G~l~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~~~l~~~v~- 150 (168)
T PF00158_consen 74 EKGAFTGARSD--KKGLLEQANGGTLFLDEIEDLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTSKDLEELVE- 150 (168)
T ss_dssp CSSSSTTTSSE--BEHHHHHTTTSEEEEETGGGS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEESS-HHHHHH-
T ss_pred ccccccccccc--cCCceeeccceEEeecchhhhHHHHHHHHHHHHhhchhccccccccccccceEEeecCcCHHHHHH-
Confidence 7653 333221 237888899999999999999999999999999999998765544455789999999987655433
Q ss_pred ccccHHHHHHHHHHHHHhccChhHhhccCc
Q psy14504 601 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD 630 (951)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~ 630 (951)
.+.|+++|++|+..
T Consensus 151 ----------------~g~fr~dLy~rL~~ 164 (168)
T PF00158_consen 151 ----------------QGRFREDLYYRLNV 164 (168)
T ss_dssp ----------------TTSS-HHHHHHHTT
T ss_pred ----------------cCCChHHHHHHhce
Confidence 56899999999953
No 125
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=2e-17 Score=192.93 Aligned_cols=204 Identities=21% Similarity=0.254 Sum_probs=157.6
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCCC-----------cC
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNS-----------LL 99 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~~-----------~~ 99 (951)
..|.++|||.+|+++|||+..++.|...+......|. ||+||+|||||++|+++|+.+.+...... ..
T Consensus 6 ~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~ 85 (725)
T PRK07133 6 KALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN 85 (725)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC
Confidence 4699999999999999999999999999988776765 89999999999999999999865321100 01
Q ss_pred CCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcE
Q psy14504 100 SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GEL 174 (951)
Q Consensus 100 ~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i 174 (951)
+..++.++.. .. .....++.+.+.+.. .+...|++|||+|.|.. .+++.|+..|+. ..+
T Consensus 86 ~~Dvieidaa------sn--~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~--------~A~NALLKtLEEPP~~t 149 (725)
T PRK07133 86 SLDIIEMDAA------SN--NGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSK--------SAFNALLKTLEEPPKHV 149 (725)
T ss_pred CCcEEEEecc------cc--CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCH--------HHHHHHHHHhhcCCCce
Confidence 1223333221 11 112346666666542 23456999999999853 577889999985 468
Q ss_pred EEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCch
Q psy14504 175 HCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 254 (951)
Q Consensus 175 ~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 254 (951)
++|++|+.+. .+.+++++||..++|.+++.++....|+.++.+ .++.++++++..++..+.+.+ +
T Consensus 150 ifILaTte~~-----KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~k----egI~id~eAl~~LA~lS~Gsl------R 214 (725)
T PRK07133 150 IFILATTEVH-----KIPLTILSRVQRFNFRRISEDEIVSRLEFILEK----ENISYEKNALKLIAKLSSGSL------R 214 (725)
T ss_pred EEEEEcCChh-----hhhHHHHhhceeEEccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------H
Confidence 8888888776 788999999999999999999999999887774 468899999999999998876 8
Q ss_pred hHHHHHHHHHHH
Q psy14504 255 KAIDLIDEAAAK 266 (951)
Q Consensus 255 ~a~~ll~~a~~~ 266 (951)
++..+++.++..
T Consensus 215 ~AlslLekl~~y 226 (725)
T PRK07133 215 DALSIAEQVSIF 226 (725)
T ss_pred HHHHHHHHHHHh
Confidence 899999887654
No 126
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.75 E-value=1.2e-17 Score=194.74 Aligned_cols=229 Identities=16% Similarity=0.219 Sum_probs=177.8
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 518 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 518 (951)
.+.++|.+.+++.+...+++.... ..++|++|++||||+++|++++........+|+.+||..+......+.+
T Consensus 203 f~~~ig~s~~~~~~~~~~~~~A~~-------~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~el 275 (520)
T PRK10820 203 FSQIVAVSPKMRQVVEQARKLAML-------DAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESEL 275 (520)
T ss_pred ccceeECCHHHHHHHHHHHHHhCC-------CCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHh
Confidence 357899999999888888765421 1259999999999999999999888777789999999998876666788
Q ss_pred cCCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhh
Q psy14504 519 IGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 597 (951)
Q Consensus 519 ~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 597 (951)
||+.+| +.|..++ ....+..+.+++||||||+.+++..|..|++++++|.+....+......++.||+||+.....+
T Consensus 276 FG~~~~~~~~~~~~--~~g~~e~a~~GtL~LdeI~~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~vRiI~st~~~l~~l 353 (520)
T PRK10820 276 FGHAPGAYPNALEG--KKGFFEQANGGSVLLDEIGEMSPRMQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQKNLVEL 353 (520)
T ss_pred cCCCCCCcCCcccC--CCChhhhcCCCEEEEeChhhCCHHHHHHHHHHHhcCCcccCCCCcceeeeeEEEEecCCCHHHH
Confidence 887654 3333222 1234556778999999999999999999999999988775543333345778999998766544
Q ss_pred hhhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHH
Q psy14504 598 KEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKI 674 (951)
Q Consensus 598 ~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L 674 (951)
.+ .+.|+++|++|+.. .|.+|||.+ +|+..++..++.++..+.... ...+++++++.|
T Consensus 354 ~~-----------------~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~--~~~ls~~a~~~L 414 (520)
T PRK10820 354 VQ-----------------KGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVP--RPKLAADLNTVL 414 (520)
T ss_pred HH-----------------cCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHH
Confidence 32 45799999999864 889999976 689999888888876543221 257999999999
Q ss_pred HHhcccccccccccccchHHHHHHHH
Q psy14504 675 SNIGFDLIYGARDVHGCKKSLSILLK 700 (951)
Q Consensus 675 ~~~~~~~~~g~~dlhg~~~~l~~~l~ 700 (951)
.. |+|+.+++.+... +.+++.
T Consensus 415 ~~--y~WPGNvreL~nv---l~~a~~ 435 (520)
T PRK10820 415 TR--YGWPGNVRQLKNA---IYRALT 435 (520)
T ss_pred hc--CCCCCHHHHHHHH---HHHHHH
Confidence 88 8899999999988 777773
No 127
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=8.3e-18 Score=190.72 Aligned_cols=201 Identities=23% Similarity=0.322 Sum_probs=155.6
Q ss_pred CCCCCccccHHHHHHHHH---HHH---------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 41 GKLDPVIGRDDEIRRAIQ---VLQ---------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~---~l~---------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
.+|.|+.|.++..+.+.. +|. .+-+.++||+||||||||.||+++|.+. +.+++++..
T Consensus 147 v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA----------~VPFf~iSG 216 (596)
T COG0465 147 VTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------GVPFFSISG 216 (596)
T ss_pred cChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhccc----------CCCceeccc
Confidence 478999998876655554 444 3557899999999999999999999988 889999988
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC---Cchh---HHhhhhhhcc----CCcEEEEE
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSID---AGNMLKPELS----RGELHCIG 178 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~---~~~~L~~~le----~~~i~vI~ 178 (951)
++.+ .-++|-...+++.+|.++++ +.|||+||||+|.+...+... +..+ ..|.|+..|+ +..|++|+
T Consensus 217 S~FV--emfVGvGAsRVRdLF~qAkk-~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gvivia 293 (596)
T COG0465 217 SDFV--EMFVGVGASRVRDLFEQAKK-NAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIA 293 (596)
T ss_pred hhhh--hhhcCCCcHHHHHHHHHhhc-cCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEe
Confidence 8887 55778778889999999984 458999999999998776421 2222 3455555554 34699999
Q ss_pred eecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchh
Q psy14504 179 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 255 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 255 (951)
+||+++ -+|++|+| ||++ |.++.|+...|.+|++-.++.......++ +..+++.+.++. +.+
T Consensus 294 aTNRpd-----VlD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~~~Vd-----l~~iAr~tpGfs-----GAd 358 (596)
T COG0465 294 ATNRPD-----VLDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLAEDVD-----LKKIARGTPGFS-----GAD 358 (596)
T ss_pred cCCCcc-----cchHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCCCcCC-----HHHHhhhCCCcc-----cch
Confidence 999999 78999999 9997 99999999999999996666433332222 233677766665 788
Q ss_pred HHHHHHHHHHHhHH
Q psy14504 256 AIDLIDEAAAKIKI 269 (951)
Q Consensus 256 a~~ll~~a~~~~~~ 269 (951)
..+++.+|+..+..
T Consensus 359 L~nl~NEAal~aar 372 (596)
T COG0465 359 LANLLNEAALLAAR 372 (596)
T ss_pred HhhhHHHHHHHHHH
Confidence 88999888766543
No 128
>KOG0726|consensus
Probab=99.75 E-value=1.7e-18 Score=173.23 Aligned_cols=177 Identities=24% Similarity=0.345 Sum_probs=144.9
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14504 35 TEKARLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 101 (951)
Q Consensus 35 ~e~~rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~ 101 (951)
.+|+...++.++=|.+..++.+...+. -..+.+++|||+||||||.||+++|+.. ..
T Consensus 176 ~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqT----------SA 245 (440)
T KOG0726|consen 176 VEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQT----------SA 245 (440)
T ss_pred cccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhccc----------ch
Confidence 466777789999999988888877553 3667899999999999999999999976 66
Q ss_pred eEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCC---CCCchhHHhhhhhhc-------cC
Q psy14504 102 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK---VEGSIDAGNMLKPEL-------SR 171 (951)
Q Consensus 102 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~---~~~~~~~~~~L~~~l-------e~ 171 (951)
.++.+-.+.++ .+|.|+....++.+|.-|.. +.|+|+||||||.+...+- +.+..+++..++.++ .+
T Consensus 246 TFlRvvGseLi--QkylGdGpklvRqlF~vA~e-~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr 322 (440)
T KOG0726|consen 246 TFLRVVGSELI--QKYLGDGPKLVRELFRVAEE-HAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR 322 (440)
T ss_pred hhhhhhhHHHH--HHHhccchHHHHHHHHHHHh-cCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc
Confidence 77777788888 78999999999999999984 4599999999999865432 334466777777766 36
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGV 229 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~ 229 (951)
+.+.||.|||..+ .+||+|.| |+++ |+|+.|+...+..|+.-...+......+
T Consensus 323 gDvKvimATnrie-----~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~~dV 378 (440)
T KOG0726|consen 323 GDVKVIMATNRIE-----TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLAEDV 378 (440)
T ss_pred CCeEEEEeccccc-----ccCHhhcCCCccccccccCCCchhhhceeEEEeecccchhccc
Confidence 8999999999998 89999999 9997 9999999999999987555544433333
No 129
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1.8e-17 Score=194.64 Aligned_cols=205 Identities=20% Similarity=0.228 Sum_probs=160.0
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------C
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN--------------S 97 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~--------------~ 97 (951)
-|.+||||.+|+++||++.+++.|...+..+...|. ||+||+|+||||+|+++|+.+.+...+. .
T Consensus 5 ~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 5 VLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITE 84 (576)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhc
Confidence 378999999999999999999999999888777764 8999999999999999999986532110 0
Q ss_pred cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--C
Q psy14504 98 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 172 (951)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~ 172 (951)
....++++++... . .....++.+...+. ......|+||||+|.|. ...++.|+.+||. .
T Consensus 85 g~~~d~~eid~~s------~--~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt--------~~a~naLLk~LEepp~ 148 (576)
T PRK14965 85 GRSVDVFEIDGAS------N--TGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS--------TNAFNALLKTLEEPPP 148 (576)
T ss_pred CCCCCeeeeeccC------c--cCHHHHHHHHHHHHhccccCCceEEEEEChhhCC--------HHHHHHHHHHHHcCCC
Confidence 1122344444211 1 11224556665554 12334699999999994 3678899999985 5
Q ss_pred cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 173 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
.+++|++|+.+. .+.+++++||..++|..++.++....++.++++ .++.++++++..++..+++.+
T Consensus 149 ~~~fIl~t~~~~-----kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~----egi~i~~~al~~la~~a~G~l----- 214 (576)
T PRK14965 149 HVKFIFATTEPH-----KVPITILSRCQRFDFRRIPLQKIVDRLRYIADQ----EGISISDAALALVARKGDGSM----- 214 (576)
T ss_pred CeEEEEEeCChh-----hhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH-----
Confidence 788888888876 788999999999999999999999998888774 578899999999999999887
Q ss_pred chhHHHHHHHHHHHhH
Q psy14504 253 PDKAIDLIDEAAAKIK 268 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~ 268 (951)
++++++++.+++...
T Consensus 215 -r~al~~Ldqliay~g 229 (576)
T PRK14965 215 -RDSLSTLDQVLAFCG 229 (576)
T ss_pred -HHHHHHHHHHHHhcc
Confidence 899999998877653
No 130
>KOG0732|consensus
Probab=99.75 E-value=1.3e-17 Score=196.91 Aligned_cols=204 Identities=25% Similarity=0.331 Sum_probs=157.7
Q ss_pred cCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
-..|+++=|.+.++.+|...+. -.+++++||+||||||||..|+++|..+..+. ....++.-
T Consensus 261 ~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~-----~kisffmr 335 (1080)
T KOG0732|consen 261 SVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGN-----RKISFFMR 335 (1080)
T ss_pred ccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccc-----cccchhhh
Confidence 3478888888888877776432 24567899999999999999999999885542 23333333
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCc---hhHHhhhhhhc----cCCcEEEEEe
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPEL----SRGELHCIGA 179 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l----e~~~i~vI~a 179 (951)
+.++.. ++|+|+.+..++-+|++|+. ..|+|+|+||||-|.+.+.+... ..+...|+.+| .+|.+++|+|
T Consensus 336 kgaD~l--skwvgEaERqlrllFeeA~k-~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsRgqVvvigA 412 (1080)
T KOG0732|consen 336 KGADCL--SKWVGEAERQLRLLFEEAQK-TQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSRGQVVVIGA 412 (1080)
T ss_pred cCchhh--ccccCcHHHHHHHHHHHHhc-cCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCCCceEEEcc
Confidence 444444 78999999999999999984 46999999999999988754322 23556677777 3799999999
Q ss_pred ecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhH
Q psy14504 180 TTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKA 256 (951)
Q Consensus 180 t~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a 256 (951)
||+++ .++|+++| ||+. ++|+.|+.+.|..|+.-..... .-.++...+..++..+.+|. +.+.
T Consensus 413 TnRpd-----a~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw----~~~i~~~l~~~la~~t~gy~-----gaDl 478 (1080)
T KOG0732|consen 413 TNRPD-----AIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKW----EPPISRELLLWLAEETSGYG-----GADL 478 (1080)
T ss_pred cCCcc-----ccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCC----CCCCCHHHHHHHHHhccccc-----hHHH
Confidence 99999 89999999 9997 9999999999999998655543 34567888889999988887 5565
Q ss_pred HHHHHHHHH
Q psy14504 257 IDLIDEAAA 265 (951)
Q Consensus 257 ~~ll~~a~~ 265 (951)
..++.+|+.
T Consensus 479 kaLCTeAal 487 (1080)
T KOG0732|consen 479 KALCTEAAL 487 (1080)
T ss_pred HHHHHHHhh
Confidence 555555543
No 131
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.75 E-value=2.6e-17 Score=201.94 Aligned_cols=183 Identities=14% Similarity=0.123 Sum_probs=136.5
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc-------------c------------
Q psy14504 62 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT-------------K------------ 116 (951)
Q Consensus 62 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------------~------------ 116 (951)
...+++|||+||||||||.||+++|.+. +.+++.+.++.+.... .
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es----------~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~ 1696 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNS----------YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRD 1696 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhc----------CCceEEEEHHHHhhcccccccccccccccccccccccccccc
Confidence 3557799999999999999999999998 8899999998887421 0
Q ss_pred --------------cccc--HHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc-------CCc
Q psy14504 117 --------------YRGE--FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-------RGE 173 (951)
Q Consensus 117 --------------~~g~--~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le-------~~~ 173 (951)
+.+. ...+++.+|+.|++ ..||||||||||.+...... ....+.|+..|. ...
T Consensus 1697 ~~~e~~e~~n~~~~~m~~~e~~~rIr~lFelARk-~SPCIIFIDEIDaL~~~ds~---~ltL~qLLneLDg~~~~~s~~~ 1772 (2281)
T CHL00206 1697 LDTELLTMMNALTMDMMPKIDRFYITLQFELAKA-MSPCIIWIPNIHDLNVNESN---YLSLGLLVNSLSRDCERCSTRN 1772 (2281)
T ss_pred cchhhhhhcchhhhhhhhhhhHHHHHHHHHHHHH-CCCeEEEEEchhhcCCCccc---eehHHHHHHHhccccccCCCCC
Confidence 0111 22347889999985 46999999999999765211 112345555553 246
Q ss_pred EEEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChH--HHHHHHHHhhhhcc
Q psy14504 174 LHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDP--AIVAASELSYRYIS 248 (951)
Q Consensus 174 i~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~--~l~~~~~~s~~~~~ 248 (951)
|+||||||.++ .+||||+| ||+. |.++.|+..+|.+++..+... .++.+.+. .+..++..+.||.
T Consensus 1773 VIVIAATNRPD-----~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~t----kg~~L~~~~vdl~~LA~~T~GfS- 1842 (2281)
T CHL00206 1773 ILVIASTHIPQ-----KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYT----RGFHLEKKMFHTNGFGSITMGSN- 1842 (2281)
T ss_pred EEEEEeCCCcc-----cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhh----cCCCCCcccccHHHHHHhCCCCC-
Confidence 99999999999 89999999 9997 999999999999988765432 12333222 3567777777766
Q ss_pred cCCCchhHHHHHHHHHHHhHHhhc
Q psy14504 249 DRFMPDKAIDLIDEAAAKIKIEID 272 (951)
Q Consensus 249 ~~~~p~~a~~ll~~a~~~~~~~~~ 272 (951)
+++...++.+|+..+..+..
T Consensus 1843 ----GADLanLvNEAaliAirq~k 1862 (2281)
T CHL00206 1843 ----ARDLVALTNEALSISITQKK 1862 (2281)
T ss_pred ----HHHHHHHHHHHHHHHHHcCC
Confidence 89999999999877665543
No 132
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.74 E-value=9.1e-18 Score=188.53 Aligned_cols=205 Identities=23% Similarity=0.291 Sum_probs=164.6
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC------------CcC
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN------------SLL 99 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~------------~~~ 99 (951)
.|..||||.+|+++|||+.+.+.|...+...+..| .||.||.||||||+||.+|+.+.+.+.+. +..
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINE 84 (515)
T ss_pred HHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhc
Confidence 57899999999999999999999999888766655 58889999999999999999997653211 111
Q ss_pred C--CeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--C
Q psy14504 100 S--KKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 172 (951)
Q Consensus 100 ~--~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~ 172 (951)
| .+++++|..+ ......++.+.+++. ......|++|||+|+|. ..+.|.|+..+|. .
T Consensus 85 g~~~DviEiDaAS--------n~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS--------~~afNALLKTLEEPP~ 148 (515)
T COG2812 85 GSLIDVIEIDAAS--------NTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLS--------KQAFNALLKTLEEPPS 148 (515)
T ss_pred CCcccchhhhhhh--------ccChHHHHHHHHHhccCCccccceEEEEecHHhhh--------HHHHHHHhcccccCcc
Confidence 1 2333333211 112335677777765 22345799999999994 4678889888875 4
Q ss_pred cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 173 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
.|.+|.+|+.+. .+++.++|||+.+.|...+.++....|..++. .+++.++++++..+++.+.|-+
T Consensus 149 hV~FIlATTe~~-----Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~----~E~I~~e~~aL~~ia~~a~Gs~----- 214 (515)
T COG2812 149 HVKFILATTEPQ-----KIPNTILSRCQRFDFKRLDLEEIAKHLAAILD----KEGINIEEDALSLIARAAEGSL----- 214 (515)
T ss_pred CeEEEEecCCcC-----cCchhhhhccccccccCCCHHHHHHHHHHHHH----hcCCccCHHHHHHHHHHcCCCh-----
Confidence 799999999998 99999999999999999999999999998887 4789999999999999999988
Q ss_pred chhHHHHHHHHHHHhH
Q psy14504 253 PDKAIDLIDEAAAKIK 268 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~ 268 (951)
+++.++++++.+...
T Consensus 215 -RDalslLDq~i~~~~ 229 (515)
T COG2812 215 -RDALSLLDQAIAFGE 229 (515)
T ss_pred -hhHHHHHHHHHHccC
Confidence 999999999987754
No 133
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.74 E-value=3.4e-17 Score=168.64 Aligned_cols=226 Identities=17% Similarity=0.271 Sum_probs=185.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.+++++..++.+....++.... + .++|+.|.+||||..+|++.+...-+...+|+.++|..+-+....+++|
T Consensus 204 ~~~v~~S~~mk~~v~qA~k~Aml--D-----APLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElF 276 (511)
T COG3283 204 EQIVAVSPKMKHVVEQAQKLAML--D-----APLLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELF 276 (511)
T ss_pred HHHhhccHHHHHHHHHHHHhhcc--C-----CCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHh
Confidence 45778888888877776655432 1 2589999999999999999999888888999999999999999999999
Q ss_pred CCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhh
Q psy14504 520 GAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 599 (951)
Q Consensus 520 g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 599 (951)
|+.+|-.| -..+++.+.++.+|+|||..++|..|..||.++.+|.|+...+..--.-++.+|+||..+...+.+
T Consensus 277 G~apg~~g------k~GffE~AngGTVlLDeIgEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRVIcatq~nL~~lv~ 350 (511)
T COG3283 277 GHAPGDEG------KKGFFEQANGGTVLLDEIGEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRVICATQVNLVELVQ 350 (511)
T ss_pred cCCCCCCC------ccchhhhccCCeEEeehhhhcCHHHHHHHHHHhcCCceeecCCcceEEEEEEEEecccccHHHHHh
Confidence 99887322 224667788899999999999999999999999999999765544455688999999987665544
Q ss_pred hccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Q psy14504 600 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 676 (951)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~ 676 (951)
++.|+.+++.|++. .+.+||+.+ +|+.-+++.++.++..++..- ..+++++.+.+|.+
T Consensus 351 -----------------~g~fReDLfyRLNVLtl~~PpLRer~~di~pL~e~Fv~q~s~elg~p--~pkl~~~~~~~L~~ 411 (511)
T COG3283 351 -----------------KGKFREDLFYRLNVLTLNLPPLRERPQDIMPLAELFVQQFSDELGVP--RPKLAADLLTVLTR 411 (511)
T ss_pred -----------------cCchHHHHHHHhheeeecCCccccCcccchHHHHHHHHHHHHHhCCC--CCccCHHHHHHHHH
Confidence 67899999999976 788888866 788888888888877665432 26899999999988
Q ss_pred hcccccccccccccchHHHHHHHHhh
Q psy14504 677 IGFDLIYGARDVHGCKKSLSILLKKI 702 (951)
Q Consensus 677 ~~~~~~~g~~dlhg~~~~l~~~l~~~ 702 (951)
|.|..++|.+.+. +-+++..+
T Consensus 412 --y~WpGNVRqL~N~---iyRA~s~~ 432 (511)
T COG3283 412 --YAWPGNVRQLKNA---IYRALTLL 432 (511)
T ss_pred --cCCCccHHHHHHH---HHHHHHHh
Confidence 8899999999888 77777544
No 134
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.74 E-value=3.8e-17 Score=190.19 Aligned_cols=211 Identities=22% Similarity=0.254 Sum_probs=150.9
Q ss_pred hhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 30 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 30 ~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
.+.||.+++||.+|++++|++..++.+...+..+.+.++||+||||||||++|+++++............+.+++.+++.
T Consensus 51 ~~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~ 130 (531)
T TIGR02902 51 LTEPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDAT 130 (531)
T ss_pred hcchHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccc
Confidence 47899999999999999999999999998888888899999999999999999999886543221111124678888875
Q ss_pred hhhcCcc-----ccccHH----------------HHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhh
Q psy14504 110 LLLAGTK-----YRGEFE----------------DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE 168 (951)
Q Consensus 110 ~l~~~~~-----~~g~~~----------------~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~ 168 (951)
......+ ..|... ......+.. ..+.+|||||++.|.+ ..++.|+..
T Consensus 131 ~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~----a~gG~L~IdEI~~L~~--------~~q~~LL~~ 198 (531)
T TIGR02902 131 TARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTR----AHGGVLFIDEIGELHP--------VQMNKLLKV 198 (531)
T ss_pred cccCCccccchhhcCCcccchhccccccccCCcccccCchhhc----cCCcEEEEechhhCCH--------HHHHHHHHH
Confidence 3210000 000000 000011122 2346999999999954 566677766
Q ss_pred ccCC------------------------------cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHH
Q psy14504 169 LSRG------------------------------ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRG 218 (951)
Q Consensus 169 le~~------------------------------~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~ 218 (951)
|+.+ .+++|++|+... ..++|++++||..+.|++++.+++..|++.
T Consensus 199 Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p----~~L~paLrsR~~~I~f~pL~~eei~~Il~~ 274 (531)
T TIGR02902 199 LEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNP----EEIPPALRSRCVEIFFRPLLDEEIKEIAKN 274 (531)
T ss_pred HHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCc----ccCChHHhhhhheeeCCCCCHHHHHHHHHH
Confidence 6432 346777766543 178999999999999999999999999998
Q ss_pred HHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHh
Q psy14504 219 LQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 219 ~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
.+++ .++.+++++++.+...+. -.+.+.++++.|+..+
T Consensus 275 ~a~k----~~i~is~~al~~I~~y~~-------n~Rel~nll~~Aa~~A 312 (531)
T TIGR02902 275 AAEK----IGINLEKHALELIVKYAS-------NGREAVNIVQLAAGIA 312 (531)
T ss_pred HHHH----cCCCcCHHHHHHHHHhhh-------hHHHHHHHHHHHHHHH
Confidence 8875 457899999987776543 1378888888877544
No 135
>KOG0989|consensus
Probab=99.73 E-value=3.9e-17 Score=166.28 Aligned_cols=189 Identities=23% Similarity=0.349 Sum_probs=134.1
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc---eEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES---IIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~---~~~~~~~~~~~~~~~~ 516 (951)
..+.||+.++..+.+++.+ +. .+++|||||||||||+.|+++|+++++.... +...+.+......
T Consensus 36 de~~gQe~vV~~L~~a~~~-~~--------lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis--- 103 (346)
T KOG0989|consen 36 DELAGQEHVVQVLKNALLR-RI--------LPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS--- 103 (346)
T ss_pred HhhcchHHHHHHHHHHHhh-cC--------CceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc---
Confidence 5678999999999999986 32 2479999999999999999999999873211 1111222211110
Q ss_pred cccCCCCCCcccccc--chhHHHH------HhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 517 RLIGAPPGYIGYEEG--GYLTEIV------RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~--~~l~~~~------~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
.+..... ..+.... -..++.|++|||.|.+..++|++|.+.||+ ....++||+
T Consensus 104 --------vvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~-----------~s~~trFiL 164 (346)
T KOG0989|consen 104 --------VVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMED-----------FSRTTRFIL 164 (346)
T ss_pred --------chhhhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhc-----------cccceEEEE
Confidence 0000000 0000000 123458999999999999999999999997 567889999
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
.+|.- ..+++++.+|| ..+.|+++..+++... +...+..++ +.+++
T Consensus 165 Icnyl------------------------srii~pi~SRC-~KfrFk~L~d~~iv~r-------L~~Ia~~E~--v~~d~ 210 (346)
T KOG0989|consen 165 ICNYL------------------------SRIIRPLVSRC-QKFRFKKLKDEDIVDR-------LEKIASKEG--VDIDD 210 (346)
T ss_pred EcCCh------------------------hhCChHHHhhH-HHhcCCCcchHHHHHH-------HHHHHHHhC--CCCCH
Confidence 99973 34678899999 6999999999998877 333445566 88999
Q ss_pred HHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 669 AALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 669 ~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
++++.++.. .-||++.....|+++-
T Consensus 211 ~al~~I~~~------S~GdLR~Ait~Lqsls 235 (346)
T KOG0989|consen 211 DALKLIAKI------SDGDLRRAITTLQSLS 235 (346)
T ss_pred HHHHHHHHH------cCCcHHHHHHHHHHhh
Confidence 999999993 3577777655555543
No 136
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=8.2e-17 Score=187.02 Aligned_cols=203 Identities=20% Similarity=0.195 Sum_probs=155.8
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------C
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------S 97 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~--------------~ 97 (951)
-|..||||.+|+++|||+..++.|...+..+...| +||+||||+|||++|+++|+.+.+...+. .
T Consensus 5 ~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~ 84 (563)
T PRK06647 5 GTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDN 84 (563)
T ss_pred HHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHc
Confidence 47899999999999999999999999998877776 78999999999999999999986532111 0
Q ss_pred cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--C
Q psy14504 98 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--G 172 (951)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~ 172 (951)
.....++.++... . .....++.+.+.+. ......|++|||+|.|. ..+++.|+..++. .
T Consensus 85 ~~~~dv~~idgas------~--~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls--------~~a~naLLK~LEepp~ 148 (563)
T PRK06647 85 DNSLDVIEIDGAS------N--TSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLS--------NSAFNALLKTIEEPPP 148 (563)
T ss_pred CCCCCeEEecCcc------c--CCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcC--------HHHHHHHHHhhccCCC
Confidence 0112333333211 0 11223455554433 12345699999999994 3567889999986 6
Q ss_pred cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 173 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
.+++|++|+... .+.+++++||..++|.+++.++....++.++.. .++.++++++..++..+++.+
T Consensus 149 ~~vfI~~tte~~-----kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~----egi~id~eAl~lLa~~s~Gdl----- 214 (563)
T PRK06647 149 YIVFIFATTEVH-----KLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLE----DQIKYEDEALKWIAYKSTGSV----- 214 (563)
T ss_pred CEEEEEecCChH-----HhHHHHHHhceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH-----
Confidence 788888887765 678999999999999999999999999887764 578899999999999998876
Q ss_pred chhHHHHHHHHHHH
Q psy14504 253 PDKAIDLIDEAAAK 266 (951)
Q Consensus 253 p~~a~~ll~~a~~~ 266 (951)
+.+..+++.++..
T Consensus 215 -R~alslLdklis~ 227 (563)
T PRK06647 215 -RDAYTLFDQVVSF 227 (563)
T ss_pred -HHHHHHHHHHHhh
Confidence 8999999987654
No 137
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=4.4e-17 Score=184.14 Aligned_cols=204 Identities=20% Similarity=0.194 Sum_probs=154.1
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC---------------
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------- 96 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~--------------- 96 (951)
-|+++|||.+|++++||+..++.|...+..++.+| +||+|||||||||+|+++|+.+.+.....
T Consensus 5 ~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c 84 (397)
T PRK14955 5 VIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGEC 84 (397)
T ss_pred HHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCC
Confidence 47999999999999999999999999998877776 88999999999999999999986531100
Q ss_pred -------CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhh
Q psy14504 97 -------SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLK 166 (951)
Q Consensus 97 -------~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~ 166 (951)
.....+++.++... . .....++.+.+.+. ......|+||||+|.|.. ..++.|+
T Consensus 85 ~~c~~~~~~~~~n~~~~~~~~------~--~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~--------~~~~~LL 148 (397)
T PRK14955 85 ESCRDFDAGTSLNISEFDAAS------N--NSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSI--------AAFNAFL 148 (397)
T ss_pred HHHHHHhcCCCCCeEeecccc------c--CCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCH--------HHHHHHH
Confidence 00111233332211 0 11234556655553 223456999999999943 4567788
Q ss_pred hhccC--CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhh
Q psy14504 167 PELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSY 244 (951)
Q Consensus 167 ~~le~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~ 244 (951)
..+++ ...++|.+|+... .+.+++++|+..++|.+++.++....++..++. .++.++++++..++..++
T Consensus 149 k~LEep~~~t~~Il~t~~~~-----kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~----~g~~i~~~al~~l~~~s~ 219 (397)
T PRK14955 149 KTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLEEIQQQLQGICEA----EGISVDADALQLIGRKAQ 219 (397)
T ss_pred HHHhcCCCCeEEEEEeCChH-----HhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcC
Confidence 88876 4677777776654 677899999999999999999999888877764 478899999999999998
Q ss_pred hhcccCCCchhHHHHHHHHHHHh
Q psy14504 245 RYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 245 ~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
+.+ +.+...++.++..+
T Consensus 220 g~l------r~a~~~L~kl~~~~ 236 (397)
T PRK14955 220 GSM------RDAQSILDQVIAFS 236 (397)
T ss_pred CCH------HHHHHHHHHHHHhc
Confidence 877 88888888876654
No 138
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1e-16 Score=183.55 Aligned_cols=204 Identities=22% Similarity=0.250 Sum_probs=153.8
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCC---C----------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPN---S---------- 97 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~---~---------- 97 (951)
.+|+++|||.+|++++|++..++.+...+......|. ||+||+|+||||+|+.+|+.+.+..... .
T Consensus 4 ~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~ 83 (486)
T PRK14953 4 IPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEID 83 (486)
T ss_pred hHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHh
Confidence 3799999999999999999999999999988777775 7899999999999999999986421110 0
Q ss_pred -cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 98 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 98 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
.....++.++.+. ..| ...++.+...+. ..+...|++|||+|.|.. .+.+.|+..++.
T Consensus 84 ~g~~~d~~eidaas------~~g--vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~--------~a~naLLk~LEepp 147 (486)
T PRK14953 84 KGSFPDLIEIDAAS------NRG--IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTK--------EAFNALLKTLEEPP 147 (486)
T ss_pred cCCCCcEEEEeCcc------CCC--HHHHHHHHHHHHhCcccCCeeEEEEEChhhcCH--------HHHHHHHHHHhcCC
Confidence 0112344443311 111 122444444443 223457999999999843 566788888875
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
..+++|.+|+... .+.+++.+||..+.|.+|+.++...+++.+++. .++.++++++..++..+.+.+
T Consensus 148 ~~~v~Il~tt~~~-----kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~----egi~id~~al~~La~~s~G~l---- 214 (486)
T PRK14953 148 PRTIFILCTTEYD-----KIPPTILSRCQRFIFSKPTKEQIKEYLKRICNE----EKIEYEEKALDLLAQASEGGM---- 214 (486)
T ss_pred CCeEEEEEECCHH-----HHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 3577777777665 677899999999999999999999999988874 468899999999999988766
Q ss_pred CchhHHHHHHHHHHH
Q psy14504 252 MPDKAIDLIDEAAAK 266 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~ 266 (951)
+.+.++++.++..
T Consensus 215 --r~al~~Ldkl~~~ 227 (486)
T PRK14953 215 --RDAASLLDQASTY 227 (486)
T ss_pred --HHHHHHHHHHHHh
Confidence 8899999888654
No 139
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1e-16 Score=182.65 Aligned_cols=204 Identities=21% Similarity=0.226 Sum_probs=153.9
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCCC-------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------- 97 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~~------------- 97 (951)
..|+++|||.+|+++||++..++.+...+..+..++ +||+||||+|||++|+++|+.+.+......
T Consensus 5 ~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i 84 (451)
T PRK06305 5 QVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEI 84 (451)
T ss_pred HHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHH
Confidence 358999999999999999999999999988776655 789999999999999999999865321100
Q ss_pred --cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC-
Q psy14504 98 --LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR- 171 (951)
Q Consensus 98 --~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~- 171 (951)
.....++.++.. ...| -..++.+.+.+. ......|+||||+|.|.. ..++.|+.+++.
T Consensus 85 ~~~~~~d~~~i~g~------~~~g--id~ir~i~~~l~~~~~~~~~kvvIIdead~lt~--------~~~n~LLk~lEep 148 (451)
T PRK06305 85 SSGTSLDVLEIDGA------SHRG--IEDIRQINETVLFTPSKSRYKIYIIDEVHMLTK--------EAFNSLLKTLEEP 148 (451)
T ss_pred hcCCCCceEEeecc------ccCC--HHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCH--------HHHHHHHHHhhcC
Confidence 011233334321 1111 112333333332 124567999999999943 567789999986
Q ss_pred -CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccC
Q psy14504 172 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 250 (951)
Q Consensus 172 -~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~ 250 (951)
+.+++|++|+... .+.+++++||..++|.+++.++....++.++++ .++.++++++..++..+++.+
T Consensus 149 ~~~~~~Il~t~~~~-----kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~----eg~~i~~~al~~L~~~s~gdl--- 216 (451)
T PRK06305 149 PQHVKFFLATTEIH-----KIPGTILSRCQKMHLKRIPEETIIDKLALIAKQ----EGIETSREALLPIARAAQGSL--- 216 (451)
T ss_pred CCCceEEEEeCChH-----hcchHHHHhceEEeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH---
Confidence 5778888887765 788999999999999999999999998887764 478899999999999998877
Q ss_pred CCchhHHHHHHHHHHH
Q psy14504 251 FMPDKAIDLIDEAAAK 266 (951)
Q Consensus 251 ~~p~~a~~ll~~a~~~ 266 (951)
+.+..+++..+..
T Consensus 217 ---r~a~~~Lekl~~~ 229 (451)
T PRK06305 217 ---RDAESLYDYVVGL 229 (451)
T ss_pred ---HHHHHHHHHHHHh
Confidence 8888888876644
No 140
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=1e-16 Score=186.87 Aligned_cols=204 Identities=20% Similarity=0.209 Sum_probs=155.7
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCC---C-------C-----
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEV---P-------N----- 96 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~---~-------~----- 96 (951)
-|.++|||.+|+++|||+..++.|...+..++..| +||+||+||||||+|+.+|+.+.+... | .
T Consensus 5 ~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C 84 (620)
T PRK14954 5 VIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGEC 84 (620)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccC
Confidence 47899999999999999999999999888877766 889999999999999999999865321 0 0
Q ss_pred -------CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhh
Q psy14504 97 -------SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLK 166 (951)
Q Consensus 97 -------~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~ 166 (951)
.....++..++... .. ....++.+.+.+. ..+...|++|||+|.|.. ..++.|+
T Consensus 85 ~sC~~~~~g~~~n~~~~d~~s------~~--~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~--------~a~naLL 148 (620)
T PRK14954 85 ESCRDFDAGTSLNISEFDAAS------NN--SVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLST--------AAFNAFL 148 (620)
T ss_pred HHHHHHhccCCCCeEEecccc------cC--CHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCH--------HHHHHHH
Confidence 01112233332211 11 1234556655552 223456999999999943 5678899
Q ss_pred hhccC--CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhh
Q psy14504 167 PELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSY 244 (951)
Q Consensus 167 ~~le~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~ 244 (951)
.+|+. +.+++|++|+... .+.+++++|+..++|.+++.++....++.++.. .++.++++++..++..++
T Consensus 149 K~LEePp~~tv~IL~t~~~~-----kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~----egi~I~~eal~~La~~s~ 219 (620)
T PRK14954 149 KTLEEPPPHAIFIFATTELH-----KIPATIASRCQRFNFKRIPLDEIQSQLQMICRA----EGIQIDADALQLIARKAQ 219 (620)
T ss_pred HHHhCCCCCeEEEEEeCChh-----hhhHHHHhhceEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhC
Confidence 99986 5677777777655 778899999999999999999999888877764 478899999999999999
Q ss_pred hhcccCCCchhHHHHHHHHHHHh
Q psy14504 245 RYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 245 ~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
+.+ +.+.+.++..+...
T Consensus 220 Gdl------r~al~eLeKL~~y~ 236 (620)
T PRK14954 220 GSM------RDAQSILDQVIAFS 236 (620)
T ss_pred CCH------HHHHHHHHHHHHhc
Confidence 887 88888888877665
No 141
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.72 E-value=7.8e-17 Score=162.26 Aligned_cols=181 Identities=16% Similarity=0.280 Sum_probs=139.2
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 518 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 518 (951)
...++||+++++.+.-.++..+. ....+-|+||+||||.||||||..||+++ +.++....++.+..+
T Consensus 25 l~efiGQ~~vk~~L~ifI~AAk~----r~e~lDHvLl~GPPGlGKTTLA~IIA~Em---gvn~k~tsGp~leK~------ 91 (332)
T COG2255 25 LDEFIGQEKVKEQLQIFIKAAKK----RGEALDHVLLFGPPGLGKTTLAHIIANEL---GVNLKITSGPALEKP------ 91 (332)
T ss_pred HHHhcChHHHHHHHHHHHHHHHh----cCCCcCeEEeeCCCCCcHHHHHHHHHHHh---cCCeEecccccccCh------
Confidence 35678999999999999987663 23445689999999999999999999999 666666666554433
Q ss_pred cCCCCCCccccccchhHHHH-HhCCCeEEEEccccccCHHHHHHHHHHhhcceeec--CC-----CeEeecCCeEEEEec
Q psy14504 519 IGAPPGYIGYEEGGYLTEIV-RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD--NR-----GRTINFRNTIIVMTS 590 (951)
Q Consensus 519 ~g~~~~~~g~~~~~~l~~~~-~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~--~~-----g~~~~~~~~iiI~tt 590 (951)
+.+...+ .-.+++|||||||+++++.+-+.|+..||+-.+.. +. ...++.....+|.+|
T Consensus 92 -------------gDlaaiLt~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGAT 158 (332)
T COG2255 92 -------------GDLAAILTNLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGAT 158 (332)
T ss_pred -------------hhHHHHHhcCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeec
Confidence 1233333 34567899999999999999999999999866542 22 235566777777777
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 670 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 670 (951)
... +.+..+|.+||..+..+.-++.+|+.+|+.+.-..+ .+.+++++
T Consensus 159 Tr~------------------------G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l---------~i~i~~~~ 205 (332)
T COG2255 159 TRA------------------------GMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKIL---------GIEIDEEA 205 (332)
T ss_pred ccc------------------------ccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHh---------CCCCChHH
Confidence 642 346778999999999999999999999976654332 27888999
Q ss_pred HHHHHHhc
Q psy14504 671 LKKISNIG 678 (951)
Q Consensus 671 ~~~L~~~~ 678 (951)
...++..+
T Consensus 206 a~eIA~rS 213 (332)
T COG2255 206 ALEIARRS 213 (332)
T ss_pred HHHHHHhc
Confidence 99998854
No 142
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.72 E-value=1.4e-16 Score=175.25 Aligned_cols=183 Identities=22% Similarity=0.287 Sum_probs=135.6
Q ss_pred CCCCCccccHHHHHHHHHHHH-----cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14504 41 GKLDPVIGRDDEIRRAIQVLQ-----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 115 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~~l~-----~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 115 (951)
.+|+++||+++.++.+..++. .....+++|+||||||||++|+++|+.+ +..+...+.....
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~----------~~~~~~~~~~~~~--- 67 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEM----------GVNLKITSGPALE--- 67 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEEEeccchhc---
Confidence 368899999999999888776 3446789999999999999999999988 4455444432221
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--------------------CcEE
Q psy14504 116 KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--------------------GELH 175 (951)
Q Consensus 116 ~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--------------------~~i~ 175 (951)
..+ .+...+..+ ..+.||||||+|.+.+ ...+.|...+++ ..+.
T Consensus 68 -~~~----~l~~~l~~~---~~~~vl~iDEi~~l~~--------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~ 131 (305)
T TIGR00635 68 -KPG----DLAAILTNL---EEGDVLFIDEIHRLSP--------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFT 131 (305)
T ss_pred -Cch----hHHHHHHhc---ccCCEEEEehHhhhCH--------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeE
Confidence 111 233333333 3456999999999854 223345544432 2378
Q ss_pred EEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCch
Q psy14504 176 CIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 254 (951)
Q Consensus 176 vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 254 (951)
+|++||.+. .+++++++||.. +.|++|+.+++.++++..+.. .++.++++++..++..+.++. +
T Consensus 132 li~~t~~~~-----~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~----~~~~~~~~al~~ia~~~~G~p------R 196 (305)
T TIGR00635 132 LVGATTRAG-----MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL----LNVEIEPEAALEIARRSRGTP------R 196 (305)
T ss_pred EEEecCCcc-----ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH----hCCCcCHHHHHHHHHHhCCCc------c
Confidence 899999886 789999999975 899999999999999887764 467899999999999987765 7
Q ss_pred hHHHHHHHHHHHh
Q psy14504 255 KAIDLIDEAAAKI 267 (951)
Q Consensus 255 ~a~~ll~~a~~~~ 267 (951)
.+..+++.+...+
T Consensus 197 ~~~~ll~~~~~~a 209 (305)
T TIGR00635 197 IANRLLRRVRDFA 209 (305)
T ss_pred hHHHHHHHHHHHH
Confidence 7888887765443
No 143
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.72 E-value=1.2e-16 Score=178.76 Aligned_cols=205 Identities=22% Similarity=0.309 Sum_probs=148.2
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 111 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l 111 (951)
..|.+||||.+|++++|++..++.+..++..+..++++|+||||||||++|+++++.+.... .+.+++.++++.+
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~~~~-----~~~~~~~i~~~~~ 77 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELYGDP-----WENNFTEFNVADF 77 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc-----cccceEEechhhh
Confidence 46999999999999999999999999998888777999999999999999999999885321 1234556666543
Q ss_pred hcCcc-----------cccc-------HHHHHHHHHHHHHhc----CCCeEEEEecccccccCCCCCCchhHHhhhhhhc
Q psy14504 112 LAGTK-----------YRGE-------FEDRLKKILKEISNN----QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL 169 (951)
Q Consensus 112 ~~~~~-----------~~g~-------~~~~l~~~~~~a~~~----~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l 169 (951)
..... ..+. ....++.++...... ..+.+|+|||+|.+.. ..++.|..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~--------~~~~~L~~~l 149 (337)
T PRK12402 78 FDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALRE--------DAQQALRRIM 149 (337)
T ss_pred hhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCH--------HHHHHHHHHH
Confidence 21100 0000 122334443333211 2345999999998843 3455677777
Q ss_pred cC--CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 170 SR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 170 e~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
+. ...++|.+++.+. .+.+.+.+|+..+.|.+|+.+++..+++.++.+ .++.++++++..++..+.+.+
T Consensus 150 e~~~~~~~~Il~~~~~~-----~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~----~~~~~~~~al~~l~~~~~gdl 220 (337)
T PRK12402 150 EQYSRTCRFIIATRQPS-----KLIPPIRSRCLPLFFRAPTDDELVDVLESIAEA----EGVDYDDDGLELIAYYAGGDL 220 (337)
T ss_pred HhccCCCeEEEEeCChh-----hCchhhcCCceEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH
Confidence 53 3456777776655 567889999988999999999999999888774 467899999999999887665
Q ss_pred ccCCCchhHHHHHHHHH
Q psy14504 248 SDRFMPDKAIDLIDEAA 264 (951)
Q Consensus 248 ~~~~~p~~a~~ll~~a~ 264 (951)
+.+...++.++
T Consensus 221 ------r~l~~~l~~~~ 231 (337)
T PRK12402 221 ------RKAILTLQTAA 231 (337)
T ss_pred ------HHHHHHHHHHH
Confidence 66666666544
No 144
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.72 E-value=6.8e-17 Score=194.93 Aligned_cols=225 Identities=16% Similarity=0.219 Sum_probs=174.9
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 518 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 518 (951)
...++|.+.++..+...+...... ..++||+|++||||+++|++|++.......+|+.+||..+......+.+
T Consensus 324 ~~~l~g~s~~~~~~~~~~~~~a~~-------~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~~el 396 (638)
T PRK11388 324 FDHMPQDSPQMRRLIHFGRQAAKS-------SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALAEEF 396 (638)
T ss_pred ccceEECCHHHHHHHHHHHHHhCc-------CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHHHHh
Confidence 356889999998888888765421 1259999999999999999999998777789999999998776556788
Q ss_pred cCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhh
Q psy14504 519 IGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 598 (951)
Q Consensus 519 ~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 598 (951)
||...+ ....+ ....+..+.+++||||||+.+++.+|..|+++++++.++...+.....-++.+|+||+.....+.
T Consensus 397 fg~~~~---~~~~~-~~g~~~~a~~GtL~ldei~~l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~~t~~~l~~~~ 472 (638)
T PRK11388 397 LGSDRT---DSENG-RLSKFELAHGGTLFLEKVEYLSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIATTTADLAMLV 472 (638)
T ss_pred cCCCCc---CccCC-CCCceeECCCCEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEEeccCCHHHHH
Confidence 886532 11111 12234566789999999999999999999999999988765543333346789999997654332
Q ss_pred hhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Q psy14504 599 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 675 (951)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 675 (951)
. .+.|+++|++|+.. .|.+|||.+ +|+..++..++.++.... +..+.+++++++.|.
T Consensus 473 ~-----------------~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~---~~~~~~s~~a~~~L~ 532 (638)
T PRK11388 473 E-----------------QNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRF---STRLKIDDDALARLV 532 (638)
T ss_pred h-----------------cCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHh---CCCCCcCHHHHHHHH
Confidence 2 45799999999965 788999976 699999999998876543 334679999999998
Q ss_pred HhcccccccccccccchHHHHHHH
Q psy14504 676 NIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 676 ~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
. |+|+.+++.+... +++++
T Consensus 533 ~--y~WPGNvreL~~~---l~~~~ 551 (638)
T PRK11388 533 S--YRWPGNDFELRSV---IENLA 551 (638)
T ss_pred c--CCCCChHHHHHHH---HHHHH
Confidence 8 8889888888888 66655
No 145
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=7.9e-17 Score=179.68 Aligned_cols=200 Identities=20% Similarity=0.292 Sum_probs=135.5
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc-e-EEecc---ccccchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES-I-IRIDM---SEFIEKHS 514 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~-~-~~~~~---~~~~~~~~ 514 (951)
+.|+||++++..+..++...+.+ +.+||+||+|||||++|+++|+.+++.... . .+..| ..+.....
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~ri~--------ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~ 89 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGKIG--------HAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGIS 89 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCCCC--------eEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCC
Confidence 56889999999999998754422 358999999999999999999999653211 0 01111 11111100
Q ss_pred hhcccC-CCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEe
Q psy14504 515 ISRLIG-APPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 589 (951)
Q Consensus 515 ~~~l~g-~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 589 (951)
. .++- ......|.+..+.+.+.+. ...+.|+||||+|.++...+|+||+.||+ +..+++||++
T Consensus 90 ~-dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEE-----------Pp~~viFILa 157 (484)
T PRK14956 90 S-DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEE-----------PPAHIVFILA 157 (484)
T ss_pred c-cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhc-----------CCCceEEEee
Confidence 0 0000 0011223333333433333 34568999999999999999999999997 5678899998
Q ss_pred cCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchH
Q psy14504 590 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 669 (951)
Q Consensus 590 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 669 (951)
|+... .+.+.+++|| ..+.|.+++.+++.+.+...+ ...+ +.++++
T Consensus 158 Tte~~------------------------kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~-------~~Eg--i~~e~e 203 (484)
T PRK14956 158 TTEFH------------------------KIPETILSRC-QDFIFKKVPLSVLQDYSEKLC-------KIEN--VQYDQE 203 (484)
T ss_pred cCChh------------------------hccHHHHhhh-heeeecCCCHHHHHHHHHHHH-------HHcC--CCCCHH
Confidence 88622 3678999999 699999999999988755544 3345 788999
Q ss_pred HHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 670 ALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 670 ~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
++..|+..+ -||++..+..|++++
T Consensus 204 AL~~Ia~~S------~Gd~RdAL~lLeq~i 227 (484)
T PRK14956 204 GLFWIAKKG------DGSVRDMLSFMEQAI 227 (484)
T ss_pred HHHHHHHHc------CChHHHHHHHHHHHH
Confidence 999999843 355555544466655
No 146
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.71 E-value=1.4e-16 Score=193.20 Aligned_cols=225 Identities=16% Similarity=0.266 Sum_probs=176.7
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccC
Q psy14504 441 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 520 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 520 (951)
.++|++.+++.+...+...... ..++|++|++|||||++|++|+......+.+|+.+||..+........+||
T Consensus 377 ~liG~S~~~~~~~~~~~~~a~~-------~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg 449 (686)
T PRK15429 377 EIIGRSEAMYSVLKQVEMVAQS-------DSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFG 449 (686)
T ss_pred ceeecCHHHHHHHHHHHHHhCC-------CCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcC
Confidence 6899999999998888765422 126999999999999999999999877788999999998876555667888
Q ss_pred CCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhh
Q psy14504 521 APPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 599 (951)
Q Consensus 521 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 599 (951)
+..+ +.|... .....+..+.+++||||||+.+++.+|..|+.+++++.+....+......++.+|++|+........
T Consensus 450 ~~~~~~~g~~~--~~~g~le~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~~l~~~~~ 527 (686)
T PRK15429 450 HERGAFTGASA--QRIGRFELADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNRDLKKMVA 527 (686)
T ss_pred ccccccccccc--chhhHHHhcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCCCHHHHHH
Confidence 7554 233221 1223456677899999999999999999999999998877654444444678899999976543322
Q ss_pred hccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCcc-ccchHHHHHHH
Q psy14504 600 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDL-KISKAALKKIS 675 (951)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l-~~~~~~~~~L~ 675 (951)
.+.|+++|++|+.. .|.+|||.+ +|+..++..++.++..+. +..+ .+++++++.|.
T Consensus 528 -----------------~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~---~~~~~~~s~~al~~L~ 587 (686)
T PRK15429 528 -----------------DREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRM---GRNIDSIPAETLRTLS 587 (686)
T ss_pred -----------------cCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHc---CCCCCCcCHHHHHHHH
Confidence 45799999999965 789999976 789999988888876543 3334 59999999998
Q ss_pred HhcccccccccccccchHHHHHHH
Q psy14504 676 NIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 676 ~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
. |+|+.+++.+..+ +++++
T Consensus 588 ~--y~WPGNvrEL~~~---i~~a~ 606 (686)
T PRK15429 588 N--MEWPGNVRELENV---IERAV 606 (686)
T ss_pred h--CCCCCcHHHHHHH---HHHHH
Confidence 8 8899999999988 77766
No 147
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=3.4e-16 Score=176.45 Aligned_cols=205 Identities=21% Similarity=0.252 Sum_probs=153.0
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCC-CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCc--CCCeEEEEeh
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSK-NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL--LSKKILLLDI 108 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~-~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~--~~~~~~~~~~ 108 (951)
..|++||||.+|++++|++..++.+...+..+.. +++||+||||+|||++|+++|+.+.+...+... .+..++.++.
T Consensus 5 ~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~~ 84 (367)
T PRK14970 5 VVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELDA 84 (367)
T ss_pred HHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEecc
Confidence 4689999999999999999999999999887654 478899999999999999999998653221111 1223333321
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecch
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLN 183 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~ 183 (951)
.. ......++.++.++.. ..+..|++|||+|.+.. ...+.|+..++. ...++|++|+..
T Consensus 85 ~~--------~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~--------~~~~~ll~~le~~~~~~~~Il~~~~~ 148 (367)
T PRK14970 85 AS--------NNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSS--------AAFNAFLKTLEEPPAHAIFILATTEK 148 (367)
T ss_pred cc--------CCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCH--------HHHHHHHHHHhCCCCceEEEEEeCCc
Confidence 11 1112356666666542 23456999999998843 345677777764 346677777766
Q ss_pred HHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q psy14504 184 EYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 263 (951)
Q Consensus 184 ~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 263 (951)
. .+.+++.+||..+++++|+.++...++...+.+ .++.++++++..++..+.+.+ +.+...++..
T Consensus 149 ~-----kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~----~g~~i~~~al~~l~~~~~gdl------r~~~~~lekl 213 (367)
T PRK14970 149 H-----KIIPTILSRCQIFDFKRITIKDIKEHLAGIAVK----EGIKFEDDALHIIAQKADGAL------RDALSIFDRV 213 (367)
T ss_pred c-----cCCHHHHhcceeEecCCccHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCCH------HHHHHHHHHH
Confidence 5 788999999999999999999999999887764 578899999999999988766 7888888877
Q ss_pred HHHh
Q psy14504 264 AAKI 267 (951)
Q Consensus 264 ~~~~ 267 (951)
+..+
T Consensus 214 ~~y~ 217 (367)
T PRK14970 214 VTFC 217 (367)
T ss_pred HHhc
Confidence 6543
No 148
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.71 E-value=2e-16 Score=175.57 Aligned_cols=204 Identities=22% Similarity=0.274 Sum_probs=148.8
Q ss_pred hcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh
Q psy14504 31 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL 110 (951)
Q Consensus 31 ~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 110 (951)
..+|+++|||.+|++++|++.+++.+..++.....++++|+||||||||++++++++.+..... ...++.++.+.
T Consensus 4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~-----~~~~i~~~~~~ 78 (319)
T PRK00440 4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELYGEDW-----RENFLELNASD 78 (319)
T ss_pred cCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCcc-----ccceEEecccc
Confidence 4679999999999999999999999999998887788999999999999999999999844221 22344443322
Q ss_pred hhcCccccccHHHHHHHHHHHHHhc-CCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHH
Q psy14504 111 LLAGTKYRGEFEDRLKKILKEISNN-QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQ 187 (951)
Q Consensus 111 l~~~~~~~g~~~~~l~~~~~~a~~~-~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~ 187 (951)
.. ........+..+....... ..+.+++|||+|.+.. +.++.|..+++. ....+|.+++...
T Consensus 79 ~~----~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~--------~~~~~L~~~le~~~~~~~lIl~~~~~~--- 143 (319)
T PRK00440 79 ER----GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTS--------DAQQALRRTMEMYSQNTRFILSCNYSS--- 143 (319)
T ss_pred cc----chHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCH--------HHHHHHHHHHhcCCCCCeEEEEeCCcc---
Confidence 11 0011111222221111011 2356999999999843 344567777763 4566777777665
Q ss_pred hhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHH
Q psy14504 188 YIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 188 ~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~ 266 (951)
.+.+++.+|+..+.|++++.++...+++..+.+ .++.++++++..++..+.+.+ +.+.+.++.++..
T Consensus 144 --~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~----~~~~i~~~al~~l~~~~~gd~------r~~~~~l~~~~~~ 210 (319)
T PRK00440 144 --KIIDPIQSRCAVFRFSPLKKEAVAERLRYIAEN----EGIEITDDALEAIYYVSEGDM------RKAINALQAAAAT 210 (319)
T ss_pred --ccchhHHHHhheeeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHHHc
Confidence 667889999999999999999999999887774 478899999999999988776 8888888876643
No 149
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.71 E-value=3.5e-16 Score=176.29 Aligned_cols=204 Identities=23% Similarity=0.280 Sum_probs=153.3
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN-------------- 96 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~-------------- 96 (951)
.+|+++|||.+|+++||++..++.+...+..+..++ +||+||||+|||++|+++++.+.+...+.
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~ 81 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEIN 81 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHh
Confidence 479999999999999999999999999888766655 68999999999999999999986532110
Q ss_pred CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhc---CCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 97 SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
......++.++... ......++.++..+... .+..|++|||+|.+.. ...+.|+..++.
T Consensus 82 ~~~~~~~~~~~~~~--------~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~--------~~~~~Ll~~le~~~ 145 (355)
T TIGR02397 82 SGSSLDVIEIDAAS--------NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSK--------SAFNALLKTLEEPP 145 (355)
T ss_pred cCCCCCEEEeeccc--------cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCH--------HHHHHHHHHHhCCc
Confidence 00122344443321 11122456666665421 3346999999998843 456678888864
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
..+++|.+|+... .+.+++++||..+.|++|+.++...+++..+++ .++.++++++..++..+++..
T Consensus 146 ~~~~lIl~~~~~~-----~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~g~~---- 212 (355)
T TIGR02397 146 EHVVFILATTEPH-----KIPATILSRCQRFDFKRIPLEDIVERLKKILDK----EGIKIEDEALELIARAADGSL---- 212 (355)
T ss_pred cceeEEEEeCCHH-----HHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCh----
Confidence 5677788887765 677899999999999999999999999888774 467899999999999887655
Q ss_pred CchhHHHHHHHHHHH
Q psy14504 252 MPDKAIDLIDEAAAK 266 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~ 266 (951)
+.+.+.++.++..
T Consensus 213 --~~a~~~lekl~~~ 225 (355)
T TIGR02397 213 --RDALSLLDQLISF 225 (355)
T ss_pred --HHHHHHHHHHHhh
Confidence 7888888777654
No 150
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=3.5e-16 Score=183.86 Aligned_cols=202 Identities=19% Similarity=0.192 Sum_probs=154.8
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCC-CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCC-----CC--------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRS-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVP-----NS-------- 97 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~-~~~iLL~GppGtGKTtla~~la~~l~~~~~~-----~~-------- 97 (951)
.+|.++|||.+|++++|++..++.|...+...+ ..++||+||+|+|||++|+++|+.+.+.... ..
T Consensus 4 ~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~ 83 (620)
T PRK14948 4 EPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRA 83 (620)
T ss_pred chHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHH
Confidence 479999999999999999999999999888754 4678999999999999999999998653210 00
Q ss_pred ---cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhc---CCCeEEEEecccccccCCCCCCchhHHhhhhhhccC
Q psy14504 98 ---LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR 171 (951)
Q Consensus 98 ---~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~ 171 (951)
.....++.++.. .+.....++.++..+... +...|+||||+|.|. .+.++.|+..+|.
T Consensus 84 i~~g~h~D~~ei~~~--------~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt--------~~a~naLLK~LEe 147 (620)
T PRK14948 84 IAAGNALDVIEIDAA--------SNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLS--------TAAFNALLKTLEE 147 (620)
T ss_pred HhcCCCccEEEEecc--------ccCCHHHHHHHHHHHhhChhcCCceEEEEECccccC--------HHHHHHHHHHHhc
Confidence 001123333221 112234667777666422 345699999999994 3677889999986
Q ss_pred --CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhccc
Q psy14504 172 --GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISD 249 (951)
Q Consensus 172 --~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~ 249 (951)
+.+++|++|+.+. .+.+++++||..++|..++.++....+..++.+ .++.++++++..++..+.+..
T Consensus 148 Pp~~tvfIL~t~~~~-----~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~k----egi~is~~al~~La~~s~G~l-- 216 (620)
T PRK14948 148 PPPRVVFVLATTDPQ-----RVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEK----ESIEIEPEALTLVAQRSQGGL-- 216 (620)
T ss_pred CCcCeEEEEEeCChh-----hhhHHHHhheeEEEecCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH--
Confidence 5688888888766 678899999999999999999988888877764 467899999999999988766
Q ss_pred CCCchhHHHHHHHHH
Q psy14504 250 RFMPDKAIDLIDEAA 264 (951)
Q Consensus 250 ~~~p~~a~~ll~~a~ 264 (951)
+.+..+++..+
T Consensus 217 ----r~A~~lLekls 227 (620)
T PRK14948 217 ----RDAESLLDQLS 227 (620)
T ss_pred ----HHHHHHHHHHH
Confidence 88888888654
No 151
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.71 E-value=2.7e-16 Score=187.32 Aligned_cols=203 Identities=19% Similarity=0.285 Sum_probs=153.7
Q ss_pred hcCCCCCccccHHHHHHHHHHHH------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
...+|+++.|.+...+++..++. ...+.+++|+||||||||++|+++|+++ +.+++.+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~----------~~~f~~i 216 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KVPFFTI 216 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc----------CCCEEEE
Confidence 34567788888876665554332 1336789999999999999999999998 7889999
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC--C-ch---hHHhhhhhhcc----CCcEEE
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE--G-SI---DAGNMLKPELS----RGELHC 176 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~--~-~~---~~~~~L~~~le----~~~i~v 176 (951)
+.+.+. ..+.|.....++.+|..+. ...|+||||||+|.+...+... + .. ...+.|+..|+ +..+++
T Consensus 217 s~~~~~--~~~~g~~~~~~~~~f~~a~-~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv 293 (644)
T PRK10733 217 SGSDFV--EMFVGVGASRVRDMFEQAK-KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 (644)
T ss_pred ehHHhH--HhhhcccHHHHHHHHHHHH-hcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE
Confidence 888776 4567777888999999987 4469999999999998765421 1 11 23344444443 457999
Q ss_pred EEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCc
Q psy14504 177 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 253 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 253 (951)
|+|||+++ .+|++++| ||+. |.|+.|+.++|.+||+.+..+......+ .+..+++.+.+|. +
T Consensus 294 IaaTN~p~-----~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~~~-----d~~~la~~t~G~s-----g 358 (644)
T PRK10733 294 IAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAPDI-----DAAIIARGTPGFS-----G 358 (644)
T ss_pred EEecCChh-----hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCCcC-----CHHHHHhhCCCCC-----H
Confidence 99999998 89999998 9996 9999999999999999888765433222 2345666666655 8
Q ss_pred hhHHHHHHHHHHHhHH
Q psy14504 254 DKAIDLIDEAAAKIKI 269 (951)
Q Consensus 254 ~~a~~ll~~a~~~~~~ 269 (951)
.+..+++.+|+..+..
T Consensus 359 adl~~l~~eAa~~a~r 374 (644)
T PRK10733 359 ADLANLVNEAALFAAR 374 (644)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8999999998876543
No 152
>KOG0734|consensus
Probab=99.71 E-value=7.7e-17 Score=173.83 Aligned_cols=164 Identities=23% Similarity=0.304 Sum_probs=124.9
Q ss_pred hccCCChHHHHHHHHHHHHhhh-------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~-------~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
+++|.|.++|+..+.+.+...+ .|-+-|+ .+||+||||||||.|||++|.+. +.+|+...+++|.+
T Consensus 303 F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPK----GVLLvGPPGTGKTlLARAvAGEA---~VPFF~~sGSEFdE 375 (752)
T KOG0734|consen 303 FEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPK----GVLLVGPPGTGKTLLARAVAGEA---GVPFFYASGSEFDE 375 (752)
T ss_pred cccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCC----ceEEeCCCCCchhHHHHHhhccc---CCCeEeccccchhh
Confidence 5778899999988888876543 2222233 59999999999999999999887 88999999999876
Q ss_pred hhchhcccCCCCCCcccc--ccchhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeE
Q psy14504 512 KHSISRLIGAPPGYIGYE--EGGYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 578 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~--~~~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 578 (951)
. |+|.. ..+.++..++...+|||||||+|... ...+|+||-.||.- .
T Consensus 376 m------------~VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF--~------ 435 (752)
T KOG0734|consen 376 M------------FVGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGF--K------ 435 (752)
T ss_pred h------------hhcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCc--C------
Confidence 4 55543 34778888888899999999999764 24578888888741 1
Q ss_pred eecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 579 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 579 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
....+|||.+||++...= ....+| +|||..|.++.++-.-..+|+..++.+
T Consensus 436 -qNeGiIvigATNfpe~LD-------------------~AL~RP---GRFD~~v~Vp~PDv~GR~eIL~~yl~k 486 (752)
T KOG0734|consen 436 -QNEGIIVIGATNFPEALD-------------------KALTRP---GRFDRHVTVPLPDVRGRTEILKLYLSK 486 (752)
T ss_pred -cCCceEEEeccCChhhhh-------------------HHhcCC---CccceeEecCCCCcccHHHHHHHHHhc
Confidence 234678888999754310 011233 799999999999999999998887765
No 153
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=3.6e-16 Score=183.81 Aligned_cols=204 Identities=20% Similarity=0.193 Sum_probs=159.3
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCC---------------C
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVP---------------N 96 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~---------------~ 96 (951)
.+++||||.+|+++||++..++.|...+..+...| +||+||+|+|||++|+.+|+.+.+.... .
T Consensus 6 ~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~ 85 (614)
T PRK14971 6 VSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFN 85 (614)
T ss_pred HHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHh
Confidence 47999999999999999999999999998877777 6899999999999999999998643211 0
Q ss_pred CcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 97 SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 97 ~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
.....+++.++.... .....++.++..+.. .+...|++|||+|.|. .+.++.|+.+|+.
T Consensus 86 ~~~~~n~~~ld~~~~--------~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls--------~~a~naLLK~LEepp 149 (614)
T PRK14971 86 EQRSYNIHELDAASN--------NSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS--------QAAFNAFLKTLEEPP 149 (614)
T ss_pred cCCCCceEEeccccc--------CCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC--------HHHHHHHHHHHhCCC
Confidence 111234444443211 112356666666541 2235699999999994 3678889999986
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
...++|++|+... .+.+++++||..++|.+++.++....++.++.. .++.++++++..++..+++.+
T Consensus 150 ~~tifIL~tt~~~-----kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~----egi~i~~~al~~La~~s~gdl---- 216 (614)
T PRK14971 150 SYAIFILATTEKH-----KILPTILSRCQIFDFNRIQVADIVNHLQYVASK----EGITAEPEALNVIAQKADGGM---- 216 (614)
T ss_pred CCeEEEEEeCCch-----hchHHHHhhhheeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH----
Confidence 5678888887665 788999999999999999999999999888774 478899999999999998887
Q ss_pred CchhHHHHHHHHHHHh
Q psy14504 252 MPDKAIDLIDEAAAKI 267 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~~ 267 (951)
+++...++..+...
T Consensus 217 --r~al~~Lekl~~y~ 230 (614)
T PRK14971 217 --RDALSIFDQVVSFT 230 (614)
T ss_pred --HHHHHHHHHHHHhc
Confidence 88999888876553
No 154
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.69 E-value=2.3e-16 Score=184.47 Aligned_cols=225 Identities=18% Similarity=0.238 Sum_probs=173.9
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccC
Q psy14504 441 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 520 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 520 (951)
.++|.+.++..+...+...... ..++++.|++|||||++|+++++.......+|+.++|..+......+.+||
T Consensus 139 ~lig~s~~~~~l~~~~~~~~~~-------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~~~~lfg 211 (469)
T PRK10923 139 DIIGEAPAMQDVFRIIGRLSRS-------SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFG 211 (469)
T ss_pred cceecCHHHHHHHHHHHHHhcc-------CCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHHHHHhcC
Confidence 3567777777777766543311 126999999999999999999999887788999999999877666778899
Q ss_pred CCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhh
Q psy14504 521 APPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 599 (951)
Q Consensus 521 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 599 (951)
+..| +.|.... ....+..+.++.||||||+.+++..|..|+++++++.+....+......++.+|+||+........
T Consensus 212 ~~~g~~~~~~~~--~~g~~~~a~~Gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 289 (469)
T PRK10923 212 HEKGAFTGANTI--RQGRFEQADGGTLFLDEIGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQ 289 (469)
T ss_pred CCCCCCCCCCcC--CCCCeeECCCCEEEEeccccCCHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHH
Confidence 8765 3343321 122345667899999999999999999999999999888765544445678999999876543222
Q ss_pred hccccHHHHHHHHHHHHHhccChhHhhccC-cEEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCc-cccchHHHHHHH
Q psy14504 600 MEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNR--KNILSIANIQLNILKNKLLKMNMD-LKISKAALKKIS 675 (951)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~-~~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~-l~~~~~~~~~L~ 675 (951)
.+.|+++|++|+. ..|.+|||.+ +|+..++..++.++.... +.. ..+++++++.|.
T Consensus 290 -----------------~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~---~~~~~~~~~~a~~~L~ 349 (469)
T PRK10923 290 -----------------EGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAAREL---GVEAKLLHPETEAALT 349 (469)
T ss_pred -----------------cCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHc---CCCCCCcCHHHHHHHH
Confidence 4579999999995 4888899866 789999999888875543 333 468999999998
Q ss_pred HhcccccccccccccchHHHHHHH
Q psy14504 676 NIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 676 ~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
. |+|+++++.+..+ +++++
T Consensus 350 ~--~~wpgNv~eL~~~---i~~~~ 368 (469)
T PRK10923 350 R--LAWPGNVRQLENT---CRWLT 368 (469)
T ss_pred h--CCCCChHHHHHHH---HHHHH
Confidence 8 8899999999988 66666
No 155
>KOG2035|consensus
Probab=99.69 E-value=2.4e-15 Score=150.40 Aligned_cols=253 Identities=18% Similarity=0.186 Sum_probs=180.4
Q ss_pred hHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCc---------CCC--e
Q psy14504 34 LTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL---------LSK--K 102 (951)
Q Consensus 34 l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~---------~~~--~ 102 (951)
|.++|||..|+.++++++.-..+........-+|+++|||+|+||.|.+.++.++++..+++..- .+. +
T Consensus 3 Wvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklE 82 (351)
T KOG2035|consen 3 WVDKYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLE 82 (351)
T ss_pred chhhcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEE
Confidence 78999999999999999988888888777778999999999999999999999999875433110 011 1
Q ss_pred EEEEehh-hhhcCcccccc-HHHHHHHHHHHHHhcC--------CCeEEEEecccccccCCCCCCchhHHhhhhhhcc--
Q psy14504 103 ILLLDIA-LLLAGTKYRGE-FEDRLKKILKEISNNQ--------KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-- 170 (951)
Q Consensus 103 ~~~~~~~-~l~~~~~~~g~-~~~~l~~~~~~a~~~~--------~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le-- 170 (951)
+-.+... .+....+..|. -+-.++++++++.+.. .-.|++|-|+|.|+. +++..|+..||
T Consensus 83 istvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~--------dAQ~aLRRTMEkY 154 (351)
T KOG2035|consen 83 ISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTR--------DAQHALRRTMEKY 154 (351)
T ss_pred EEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhH--------HHHHHHHHHHHHH
Confidence 1111000 00001112232 2335677777765222 236899999999954 88889999998
Q ss_pred CCcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccC
Q psy14504 171 RGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 250 (951)
Q Consensus 171 ~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~ 250 (951)
.+.+++|..+|... .+-++++|||-.|+++.|+.+|...++..++++ +++.++.+.+..+++.+.|-+
T Consensus 155 s~~~RlIl~cns~S-----riIepIrSRCl~iRvpaps~eeI~~vl~~v~~k----E~l~lp~~~l~rIa~kS~~nL--- 222 (351)
T KOG2035|consen 155 SSNCRLILVCNSTS-----RIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKK----EGLQLPKELLKRIAEKSNRNL--- 222 (351)
T ss_pred hcCceEEEEecCcc-----cchhHHhhheeEEeCCCCCHHHHHHHHHHHHHH----hcccCcHHHHHHHHHHhcccH---
Confidence 47899999999887 889999999999999999999999999999885 578889999999999999887
Q ss_pred CCchhHHHHHHHHHHHhHH-hhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHH
Q psy14504 251 FMPDKAIDLIDEAAAKIKI-EIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEIN 315 (951)
Q Consensus 251 ~~p~~a~~ll~~a~~~~~~-~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~ 315 (951)
+.|+-+++.++..... ...+.+...-+|+-.+......+-. ..+.+++.++++.+.
T Consensus 223 ---RrAllmlE~~~~~n~~~~a~~~~i~~~dWe~~i~e~a~~i~~------eQs~~~L~~vR~~LY 279 (351)
T KOG2035|consen 223 ---RRALLMLEAVRVNNEPFTANSQVIPKPDWEIYIQEIARVILK------EQSPAKLLEVRGRLY 279 (351)
T ss_pred ---HHHHHHHHHHHhccccccccCCCCCCccHHHHHHHHHHHHHh------ccCHHHHHHHHHHHH
Confidence 8888777776654221 1111222234566666665544321 224456666666554
No 156
>PRK04132 replication factor C small subunit; Provisional
Probab=99.68 E-value=2.8e-14 Score=170.13 Aligned_cols=162 Identities=19% Similarity=0.251 Sum_probs=120.6
Q ss_pred EEEEeC--CCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHh-----CC
Q psy14504 472 SFMFLG--PTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR-----KP 542 (951)
Q Consensus 472 ~~Ll~G--ppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~-----~~ 542 (951)
+-+..| |++.||||+|++||+.+++. +.+++.+|.++......+... +...... .+
T Consensus 566 ~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~i---------------Ik~~a~~~~~~~~~ 630 (846)
T PRK04132 566 HNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREK---------------VKEFARTKPIGGAS 630 (846)
T ss_pred hhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHH---------------HHHHHhcCCcCCCC
Confidence 456779 99999999999999999875 347888888875433322221 1111111 13
Q ss_pred CeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccCh
Q psy14504 543 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 622 (951)
Q Consensus 543 ~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 622 (951)
+.|+||||+|.++.+.|++|++.||+ +..++.||++||... .+.+
T Consensus 631 ~KVvIIDEaD~Lt~~AQnALLk~lEe-----------p~~~~~FILi~N~~~------------------------kIi~ 675 (846)
T PRK04132 631 FKIIFLDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCNYSS------------------------KIIE 675 (846)
T ss_pred CEEEEEECcccCCHHHHHHHHHHhhC-----------CCCCeEEEEEeCChh------------------------hCch
Confidence 47999999999999999999999997 557889999999643 3467
Q ss_pred hHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 623 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 623 ~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
++.+|| .++.|+|++.+++...+...+ ...+ +.++++++..|+.. .-||+..+...|+.+.
T Consensus 676 tIrSRC-~~i~F~~ls~~~i~~~L~~I~-------~~Eg--i~i~~e~L~~Ia~~------s~GDlR~AIn~Lq~~~ 736 (846)
T PRK04132 676 PIQSRC-AIFRFRPLRDEDIAKRLRYIA-------ENEG--LELTEEGLQAILYI------AEGDMRRAINILQAAA 736 (846)
T ss_pred HHhhhc-eEEeCCCCCHHHHHHHHHHHH-------HhcC--CCCCHHHHHHHHHH------cCCCHHHHHHHHHHHH
Confidence 899999 799999999999998855443 3335 66889999999883 3466766655565543
No 157
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.8e-16 Score=186.06 Aligned_cols=185 Identities=19% Similarity=0.267 Sum_probs=126.2
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC-c-eEEecc---ccccchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-S-IIRIDM---SEFIEKHS 514 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~-~-~~~~~~---~~~~~~~~ 514 (951)
+.|+||+++++.|.+++...+. .+.+||+||||||||++|+++|+.+++... . ..+..| ..+.....
T Consensus 16 ddIIGQe~Iv~~LknaI~~~rl--------~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~ 87 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQRL--------HHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEIAQGRF 87 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCCC--------CeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHHhcCCC
Confidence 5688999999999999875442 224699999999999999999999965321 0 011111 11111000
Q ss_pred hhcccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEec
Q psy14504 515 ISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 590 (951)
Q Consensus 515 ~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 590 (951)
..-+.-......|.+..+.+...+. ...+.|+||||+|+++...+|.||+.||+ +..+++||++|
T Consensus 88 ~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEE-----------PP~~vrFILaT 156 (944)
T PRK14949 88 VDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEE-----------PPEHVKFLLAT 156 (944)
T ss_pred ceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------cCCCeEEEEEC
Confidence 0000000111223333334443332 34578999999999999999999999997 56778888887
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 670 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 670 (951)
+... .+.+.+++|| .++.|.+++.+++.+.+...+.. .+ +.+++++
T Consensus 157 Te~~------------------------kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~-------Eg--I~~edeA 202 (944)
T PRK14949 157 TDPQ------------------------KLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQ-------EQ--LPFEAEA 202 (944)
T ss_pred CCch------------------------hchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHH-------cC--CCCCHHH
Confidence 7533 2467899999 79999999999999986655543 23 6788999
Q ss_pred HHHHHHh
Q psy14504 671 LKKISNI 677 (951)
Q Consensus 671 ~~~L~~~ 677 (951)
++.|+..
T Consensus 203 L~lIA~~ 209 (944)
T PRK14949 203 LTLLAKA 209 (944)
T ss_pred HHHHHHH
Confidence 9998874
No 158
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.68 E-value=5.5e-15 Score=174.11 Aligned_cols=154 Identities=25% Similarity=0.339 Sum_probs=111.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhH----HHH-HhCCCeEE
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLT----EIV-RRKPYSLI 546 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~----~~~-~~~~~~vl 546 (951)
++||.|.||+|||++..++|+.. +..++++++++-++ ...+||+..+-. +++.+. .++ .-..++++
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~t---G~kliRINLSeQTd---L~DLfGsd~Pve---~~Gef~w~dapfL~amr~G~WV 1615 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKT---GKKLIRINLSEQTD---LCDLFGSDLPVE---EGGEFRWMDAPFLHAMRDGGWV 1615 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHh---cCceEEeeccccch---HHHHhCCCCCcc---cCceeEecccHHHHHhhcCCEE
Confidence 59999999999999999999998 88999999998654 456788754321 222221 111 22346799
Q ss_pred EEccccccCHHHHHHHHHHhhc-ceeecCC-CeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhH
Q psy14504 547 LLDEIEKANSDVFNILLQILDD-GRLTDNR-GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF 624 (951)
Q Consensus 547 ~iDEid~~~~~~~~~Ll~~le~-g~~~~~~-g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l 624 (951)
++||+.-++.+|+..|...|+. +....+. ..+++...-..|+++..+...-.+ ++.++..|
T Consensus 1616 lLDEiNLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggG-----------------RKgLPkSF 1678 (4600)
T COG5271 1616 LLDEINLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGG-----------------RKGLPKSF 1678 (4600)
T ss_pred EeehhhhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCC-----------------cccCCHHH
Confidence 9999999999999999999995 3333332 345555444445555444332212 45789999
Q ss_pred hhccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 625 INRIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 625 ~~R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
++|| .+|....++.+|+..|+.....+
T Consensus 1679 ~nRF-svV~~d~lt~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1679 LNRF-SVVKMDGLTTDDITHIANKMYPQ 1705 (4600)
T ss_pred hhhh-heEEecccccchHHHHHHhhCCc
Confidence 9999 69999999999999998866553
No 159
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.67 E-value=5.4e-16 Score=178.57 Aligned_cols=201 Identities=16% Similarity=0.249 Sum_probs=134.1
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc----e-EEeccccccchh
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES----I-IRIDMSEFIEKH 513 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~----~-~~~~~~~~~~~~ 513 (951)
.+.|+||+++++.|.+++...+. .+.+||+||+|||||++|+++|+.+++.... . .+-.|..+....
T Consensus 15 FdEVIGQe~Vv~~L~~aL~~gRL--------~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I~~G~ 86 (830)
T PRK07003 15 FASLVGQEHVVRALTHALDGGRL--------HHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREIDEGR 86 (830)
T ss_pred HHHHcCcHHHHHHHHHHHhcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHHhcCC
Confidence 36789999999999999874431 2357999999999999999999999643210 0 011111111110
Q ss_pred chhcccC-CCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 514 SISRLIG-APPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 514 ~~~~l~g-~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
.. .++- ......|.++.+.+.+.+. ...+.|+||||+|.++...+|.||+.||+ ...+++||+
T Consensus 87 h~-DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEE-----------PP~~v~FIL 154 (830)
T PRK07003 87 FV-DYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPPHVKFIL 154 (830)
T ss_pred Cc-eEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHh-----------cCCCeEEEE
Confidence 00 0000 0011122222233333322 24578999999999999999999999997 567889999
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
+||... .+.+.+++|| ..+.|.+++.+++.+.+...+. ..+ +.+++
T Consensus 155 aTtd~~------------------------KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~-------~Eg--I~id~ 200 (830)
T PRK07003 155 ATTDPQ------------------------KIPVTVLSRC-LQFNLKQMPAGHIVSHLERILG-------EER--IAFEP 200 (830)
T ss_pred EECChh------------------------hccchhhhhe-EEEecCCcCHHHHHHHHHHHHH-------HcC--CCCCH
Confidence 998633 3568899999 7999999999999998655443 345 67899
Q ss_pred HHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 669 AALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 669 ~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
+++..|++.. -||+...+..+++.+
T Consensus 201 eAL~lIA~~A------~GsmRdALsLLdQAi 225 (830)
T PRK07003 201 QALRLLARAA------QGSMRDALSLTDQAI 225 (830)
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 9999998843 244444433345544
No 160
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.67 E-value=4.2e-16 Score=177.41 Aligned_cols=185 Identities=18% Similarity=0.284 Sum_probs=128.0
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC---c-eE---Eecc---cc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE---S-II---RIDM---SE 508 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~---~-~~---~~~~---~~ 508 (951)
.+.|+||+++++.|.+++...+. .+.+||+||+|||||++|++||+.+++... . .. +..| ..
T Consensus 15 FddVIGQe~vv~~L~~al~~gRL--------pHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~sC~~ 86 (700)
T PRK12323 15 FTTLVGQEHVVRALTHALEQQRL--------HHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCRACTE 86 (700)
T ss_pred HHHHcCcHHHHHHHHHHHHhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccHHHHH
Confidence 35789999999999999986552 235799999999999999999999965210 0 00 1111 11
Q ss_pred ccchhchhcccC-CCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCC
Q psy14504 509 FIEKHSISRLIG-APPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRN 583 (951)
Q Consensus 509 ~~~~~~~~~l~g-~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 583 (951)
+...... .++. .....+|.++.+.+.+.+. ...+.|+||||+|.++...+|.||+.||+ +..+
T Consensus 87 I~aG~hp-DviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEE-----------PP~~ 154 (700)
T PRK12323 87 IDAGRFV-DYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEE-----------PPEH 154 (700)
T ss_pred HHcCCCC-cceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhcc-----------CCCC
Confidence 1110000 0100 0011233333344444433 34478999999999999999999999997 5678
Q ss_pred eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 584 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 584 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
++||++||... .+.+.++||| ..+.|.+++.+++.+.+...+. ..+
T Consensus 155 v~FILaTtep~------------------------kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~-------~Eg-- 200 (700)
T PRK12323 155 VKFILATTDPQ------------------------KIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILG-------EEG-- 200 (700)
T ss_pred ceEEEEeCChH------------------------hhhhHHHHHH-HhcccCCCChHHHHHHHHHHHH-------HcC--
Confidence 89999998633 3568899999 7999999999999988665553 234
Q ss_pred cccchHHHHHHHHh
Q psy14504 664 LKISKAALKKISNI 677 (951)
Q Consensus 664 l~~~~~~~~~L~~~ 677 (951)
+.+++++++.|+..
T Consensus 201 i~~d~eAL~~IA~~ 214 (700)
T PRK12323 201 IAHEVNALRLLAQA 214 (700)
T ss_pred CCCCHHHHHHHHHH
Confidence 66788888888774
No 161
>KOG0727|consensus
Probab=99.67 E-value=3.4e-16 Score=153.72 Aligned_cols=157 Identities=25% Similarity=0.440 Sum_probs=116.8
Q ss_pred cCCChHHHHHHHHHHHHh--------hhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch
Q psy14504 441 RVVGQDEAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 512 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~--------~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 512 (951)
.+-|.+-.++.+.+++.. ...|..+|+ .+|+|||||||||+||+++|+.. ...|+++.+++|..+
T Consensus 156 diggld~qkqeireavelplt~~~ly~qigidppr----gvllygppg~gktml~kava~~t---~a~firvvgsefvqk 228 (408)
T KOG0727|consen 156 DIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPR----GVLLYGPPGTGKTMLAKAVANHT---TAAFIRVVGSEFVQK 228 (408)
T ss_pred ccccchhhHHHHHHHHhccchHHHHHHHhCCCCCc----ceEEeCCCCCcHHHHHHHHhhcc---chheeeeccHHHHHH
Confidence 455666666666666632 234554443 59999999999999999999877 678999999999876
Q ss_pred hchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeEe
Q psy14504 513 HSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTI 579 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~ 579 (951)
|.|+... +.++..++++.++|+||||||.+. .++|..|+.++..-.-.|
T Consensus 229 ------------ylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfd------ 290 (408)
T KOG0727|consen 229 ------------YLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFD------ 290 (408)
T ss_pred ------------HhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcC------
Confidence 6666554 667888888999999999998654 578888888876421111
Q ss_pred ecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHH
Q psy14504 580 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIA 646 (951)
Q Consensus 580 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~ 646 (951)
...|+-+||+||... .+.|.++ +|+|..|.|+-+++.+.+-++
T Consensus 291 q~~nvkvimatnrad------------------------tldpallrpgrldrkiefplpdrrqkrlvf 335 (408)
T KOG0727|consen 291 QTTNVKVIMATNRAD------------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLVF 335 (408)
T ss_pred cccceEEEEecCccc------------------------ccCHhhcCCccccccccCCCCchhhhhhhH
Confidence 235788999999743 3456666 799999999988887766553
No 162
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.67 E-value=1.7e-15 Score=176.04 Aligned_cols=226 Identities=18% Similarity=0.238 Sum_probs=173.9
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccC
Q psy14504 441 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 520 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 520 (951)
.++|.+..+..+...+..... ...+++++|++||||+++|++++........+|+.++|..+......+.+||
T Consensus 140 ~lig~s~~~~~l~~~i~~~a~-------~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~~~~lfg 212 (445)
T TIGR02915 140 GLITSSPGMQKICRTIEKIAP-------SDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLLESELFG 212 (445)
T ss_pred ceeecCHHHHHHHHHHHHHhC-------CCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHHHHHhcC
Confidence 578888888888887765331 1125899999999999999999998877778999999999877655677888
Q ss_pred CCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhh
Q psy14504 521 APPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 599 (951)
Q Consensus 521 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 599 (951)
...+ +.|... ...+.+..+.+++||||||+.+++.+|..|+++++++.+....+......++.+|+||+........
T Consensus 213 ~~~~~~~~~~~--~~~g~~~~a~~gtl~l~~i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~ 290 (445)
T TIGR02915 213 YEKGAFTGAVK--QTLGKIEYAHGGTLFLDEIGDLPLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIA 290 (445)
T ss_pred CCCCCcCCCcc--CCCCceeECCCCEEEEechhhCCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHH
Confidence 7654 233211 1223455677899999999999999999999999998876544444444578899999976543322
Q ss_pred hccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Q psy14504 600 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 676 (951)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~ 676 (951)
.+.|+++|++|+.. .|.+|||.+ +|+..++..++.++....... ...+++++++.|..
T Consensus 291 -----------------~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~ 351 (445)
T TIGR02915 291 -----------------EGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRK--TKGFTDDALRALEA 351 (445)
T ss_pred -----------------cCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCC--CCCCCHHHHHHHHh
Confidence 45799999999964 889999866 789999998888876544322 25799999999988
Q ss_pred hcccccccccccccchHHHHHHH
Q psy14504 677 IGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 677 ~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
|+|+.+++.+... +++++
T Consensus 352 --~~wpgNvreL~~~---i~~a~ 369 (445)
T TIGR02915 352 --HAWPGNVRELENK---VKRAV 369 (445)
T ss_pred --CCCCChHHHHHHH---HHHHH
Confidence 8888889998888 66665
No 163
>KOG0651|consensus
Probab=99.65 E-value=4.3e-16 Score=158.21 Aligned_cols=184 Identities=23% Similarity=0.307 Sum_probs=143.0
Q ss_pred CCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14504 41 GKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 107 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 107 (951)
-+|+.+-|.-..++.+...+. -..|..++|+||||+|||.+|+++|..+ +++++.+.
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m----------g~nfl~v~ 198 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM----------GVNFLKVV 198 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc----------CCceEEee
Confidence 378888888777777776543 2456678999999999999999999999 99999999
Q ss_pred hhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC---chhHHhhhhhhc-------cCCcEEEE
Q psy14504 108 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDAGNMLKPEL-------SRGELHCI 177 (951)
Q Consensus 108 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~l-------e~~~i~vI 177 (951)
.+.+. ++|.|+....++..|..|+.. .|||+|+||||.+.+.+.+++ .++++..|.+++ +.+++.+|
T Consensus 199 ss~lv--~kyiGEsaRlIRemf~yA~~~-~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~I 275 (388)
T KOG0651|consen 199 SSALV--DKYIGESARLIRDMFRYAREV-IPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTI 275 (388)
T ss_pred Hhhhh--hhhcccHHHHHHHHHHHHhhh-CceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEE
Confidence 99988 789999999999999999854 589999999999876554333 345666666655 24789999
Q ss_pred EeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 178 GATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 178 ~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
.|||.++ .++|+|+| |+++ +++|.|+...|..|++-.......... ++ -++++++++++-
T Consensus 276 matNrpd-----tLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~Ge--id---~eaivK~~d~f~ 338 (388)
T KOG0651|consen 276 MATNRPD-----TLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFHGE--ID---DEAILKLVDGFN 338 (388)
T ss_pred EecCCcc-----ccchhhcCCccccceeccCCcchhhceeeEeecccccccccc--cc---HHHHHHHHhccC
Confidence 9999998 89999999 9986 999999999999988644333222222 33 344556665543
No 164
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=1.8e-15 Score=178.81 Aligned_cols=203 Identities=19% Similarity=0.202 Sum_probs=150.7
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCCC-------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------- 97 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~~------------- 97 (951)
..|.+||||.+|+++||++..++.|...+..+...| +||+||+|+||||+|+.+|+.+.+......
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i 83 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAI 83 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHH
Confidence 348899999999999999999999999888766666 589999999999999999999854221000
Q ss_pred --cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC-
Q psy14504 98 --LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR- 171 (951)
Q Consensus 98 --~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~- 171 (951)
..+..++.++.+. .. ....++.+.+.+.. .....|+||||+|.|.. +..+.|+.+++.
T Consensus 84 ~~~~~~d~~~i~~~~------~~--~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~--------~a~naLLk~LEep 147 (585)
T PRK14950 84 AEGSAVDVIEMDAAS------HT--SVDDAREIIERVQFRPALARYKVYIIDEVHMLST--------AAFNALLKTLEEP 147 (585)
T ss_pred hcCCCCeEEEEeccc------cC--CHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCH--------HHHHHHHHHHhcC
Confidence 0112334443211 11 12234555544431 23456999999999843 567788888875
Q ss_pred -CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccC
Q psy14504 172 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 250 (951)
Q Consensus 172 -~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~ 250 (951)
..+++|.+++... .+.+.+++||..+.|..++..+...+++.++.+ .++.++++++..++..+.+..
T Consensus 148 p~~tv~Il~t~~~~-----kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~----egl~i~~eal~~La~~s~Gdl--- 215 (585)
T PRK14950 148 PPHAIFILATTEVH-----KVPATILSRCQRFDFHRHSVADMAAHLRKIAAA----EGINLEPGALEAIARAATGSM--- 215 (585)
T ss_pred CCCeEEEEEeCChh-----hhhHHHHhccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH---
Confidence 4677777777655 677899999999999999999999998887764 578899999999999988765
Q ss_pred CCchhHHHHHHHHHH
Q psy14504 251 FMPDKAIDLIDEAAA 265 (951)
Q Consensus 251 ~~p~~a~~ll~~a~~ 265 (951)
+.+...++..+.
T Consensus 216 ---r~al~~LekL~~ 227 (585)
T PRK14950 216 ---RDAENLLQQLAT 227 (585)
T ss_pred ---HHHHHHHHHHHH
Confidence 888888887654
No 165
>KOG0738|consensus
Probab=99.64 E-value=1e-15 Score=159.78 Aligned_cols=167 Identities=22% Similarity=0.323 Sum_probs=123.4
Q ss_pred ccCCChHHHHHHHHHHHHhhh---cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSR---SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~---~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
++|.|..+|++.|.+++...- ..++.-.+|...+|++||||||||+||+|+|.++ +..|+.+..+.++.+
T Consensus 212 ~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc---~tTFFNVSsstltSK---- 284 (491)
T KOG0738|consen 212 DDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATEC---GTTFFNVSSSTLTSK---- 284 (491)
T ss_pred HhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhh---cCeEEEechhhhhhh----
Confidence 346677777777777764321 0112234677789999999999999999999998 567777777766654
Q ss_pred cccCCCCCCcccccc--chhHHHHHhCCCeEEEEcccccc------------CHHHHHHHHHHhhcceeecCCCeEeecC
Q psy14504 517 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA------------NSDVFNILLQILDDGRLTDNRGRTINFR 582 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 582 (951)
|.|++++ +.+|+.++...+++|||||||.+ +..+-+.||..||.-. .+....
T Consensus 285 --------wRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~------~t~e~~ 350 (491)
T KOG0738|consen 285 --------WRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQ------GTLENS 350 (491)
T ss_pred --------hccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccc------cccccc
Confidence 8888887 88999999988999999999875 3578899999998411 111222
Q ss_pred C-eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHH
Q psy14504 583 N-TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLN 651 (951)
Q Consensus 583 ~-~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~ 651 (951)
+ ++++++||++-+. ..+|+.||...|.++-++.+....+++..|.
T Consensus 351 k~VmVLAATN~PWdi------------------------DEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~ 396 (491)
T KOG0738|consen 351 KVVMVLAATNFPWDI------------------------DEALRRRLEKRIYIPLPDAEARSALIKILLR 396 (491)
T ss_pred eeEEEEeccCCCcch------------------------HHHHHHHHhhheeeeCCCHHHHHHHHHHhhc
Confidence 3 5566788887763 4678888877888888888888888665553
No 166
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.64 E-value=2.8e-15 Score=174.96 Aligned_cols=224 Identities=17% Similarity=0.240 Sum_probs=168.8
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCC
Q psy14504 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 521 (951)
Q Consensus 442 v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 521 (951)
++|.+..+..+...+...... ..++++.|++||||+++|++++......+.+|+.++|..+......+.+||+
T Consensus 145 ii~~S~~~~~~~~~~~~~a~~-------~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~~~~lfg~ 217 (457)
T PRK11361 145 ILTNSPAMMDICKDTAKIALS-------QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLLESELFGH 217 (457)
T ss_pred eecccHHHhHHHHHHHHHcCC-------CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHHHHHhcCC
Confidence 556666666666655544321 2369999999999999999999988777889999999998776666788887
Q ss_pred CCCC-ccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhh
Q psy14504 522 PPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 600 (951)
Q Consensus 522 ~~~~-~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 600 (951)
..+. .|.... ....+..+.+++||||||+.+++.+|..|+.+++++.+....+......++.+|+|||.....+.+
T Consensus 218 ~~~~~~~~~~~--~~g~~~~a~~gtl~ld~i~~l~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~l~~~~~- 294 (457)
T PRK11361 218 EKGAFTGAQTL--RQGLFERANEGTLLLDEIGEMPLVLQAKLLRILQEREFERIGGHQTIKVDIRIIAATNRDLQAMVK- 294 (457)
T ss_pred CCCCCCCCCCC--CCCceEECCCCEEEEechhhCCHHHHHHHHHHHhcCcEEeCCCCceeeeceEEEEeCCCCHHHHHH-
Confidence 6542 222221 123455677899999999999999999999999998776544433344578899999976554322
Q ss_pred ccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCc-cccchHHHHHHHH
Q psy14504 601 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMD-LKISKAALKKISN 676 (951)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~-l~~~~~~~~~L~~ 676 (951)
.+.|+++++.|+.. .|..|||.+ +|+..++..++.++.... +.. ..+++++++.|..
T Consensus 295 ----------------~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~---~~~~~~~~~~a~~~L~~ 355 (457)
T PRK11361 295 ----------------EGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSEN---QRDIIDIDPMAMSLLTA 355 (457)
T ss_pred ----------------cCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHc---CCCCCCcCHHHHHHHHc
Confidence 45789999999954 788889874 889989888888876543 323 5799999999988
Q ss_pred hcccccccccccccchHHHHHHH
Q psy14504 677 IGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 677 ~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
|+|+.+++.+... +++++
T Consensus 356 --~~wpgNv~eL~~~---~~~~~ 373 (457)
T PRK11361 356 --WSWPGNIRELSNV---IERAV 373 (457)
T ss_pred --CCCCCcHHHHHHH---HHHHH
Confidence 8889889988888 66655
No 167
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.64 E-value=2.1e-15 Score=143.85 Aligned_cols=121 Identities=26% Similarity=0.422 Sum_probs=98.7
Q ss_pred cEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEeccc
Q psy14504 68 PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELH 147 (951)
Q Consensus 68 iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid 147 (951)
|||+||||||||++|+.+|+.+ +.+++.+++..+. +.+.++....+..+|..+.....|+||||||+|
T Consensus 1 ill~G~~G~GKT~l~~~la~~l----------~~~~~~i~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d 68 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL----------GFPFIEIDGSELI--SSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEID 68 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT----------TSEEEEEETTHHH--TSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGG
T ss_pred CEEECcCCCCeeHHHHHHHhhc----------ccccccccccccc--cccccccccccccccccccccccceeeeeccch
Confidence 6899999999999999999998 8899999998887 557788999999999998755458999999999
Q ss_pred ccccCCCCCC---chhHHhhhhhhcc-----CCcEEEEEeecchHHHHhhhcCHHHh-hcceE-EEee
Q psy14504 148 TMIGTGKVEG---SIDAGNMLKPELS-----RGELHCIGATTLNEYRQYIEKDAAFE-RRFQK-ILVE 205 (951)
Q Consensus 148 ~l~~~~~~~~---~~~~~~~L~~~le-----~~~i~vI~at~~~~~~~~~~~~~~l~-~Rf~~-i~~~ 205 (951)
.+.+...... .....+.|...++ ..++++|++||..+ .+++++. +||+. |+++
T Consensus 69 ~l~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~-----~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 69 KLFPKSQPSSSSFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPD-----KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GTSHHCSTSSSHHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGG-----GSCHHHHSTTSEEEEEE-
T ss_pred hcccccccccccccccccceeeecccccccccccceeEEeeCChh-----hCCHhHHhCCCcEEEEcC
Confidence 9987662111 2334555665553 24699999999987 8999999 99986 7775
No 168
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=2.5e-15 Score=171.62 Aligned_cols=186 Identities=22% Similarity=0.294 Sum_probs=125.3
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEe---ccccccchh
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRI---DMSEFIEKH 513 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~~~---~~~~~~~~~ 513 (951)
...|+||+.+++.+.+++...+. .+.+||+||+|||||++|+++|+.+.+.... -.+. .|..+....
T Consensus 14 FddVIGQe~vv~~L~~aI~~grl--------~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I~~g~ 85 (702)
T PRK14960 14 FNELVGQNHVSRALSSALERGRL--------HHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAVNEGR 85 (702)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHHhcCC
Confidence 35689999999999999975432 2468999999999999999999998542210 0000 111111100
Q ss_pred chhcccC-CCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 514 SISRLIG-APPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 514 ~~~~l~g-~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
.. .++- ......+.+..+.+...+. ..++.|+||||+|.+++..++.|++.|++ ...++.||+
T Consensus 86 hp-DviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEE-----------PP~~v~FIL 153 (702)
T PRK14960 86 FI-DLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEE-----------PPEHVKFLF 153 (702)
T ss_pred CC-ceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhc-----------CCCCcEEEE
Confidence 00 0000 0011122222223333222 24568999999999999999999999997 456778888
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
+|+... .+.+.+++|| .++.|.+++.+++.+.+...+ ...+ +.+++
T Consensus 154 aTtd~~------------------------kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il-------~kEg--I~id~ 199 (702)
T PRK14960 154 ATTDPQ------------------------KLPITVISRC-LQFTLRPLAVDEITKHLGAIL-------EKEQ--IAADQ 199 (702)
T ss_pred EECChH------------------------hhhHHHHHhh-heeeccCCCHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 887532 2456788999 699999999999998855554 3345 78999
Q ss_pred HHHHHHHHhc
Q psy14504 669 AALKKISNIG 678 (951)
Q Consensus 669 ~~~~~L~~~~ 678 (951)
+++..|+..+
T Consensus 200 eAL~~IA~~S 209 (702)
T PRK14960 200 DAIWQIAESA 209 (702)
T ss_pred HHHHHHHHHc
Confidence 9999999843
No 169
>PLN03025 replication factor C subunit; Provisional
Probab=99.63 E-value=4.1e-15 Score=163.74 Aligned_cols=182 Identities=17% Similarity=0.238 Sum_probs=126.8
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC--ceEEeccccccchhchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSEFIEKHSISR 517 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~ 517 (951)
+.++||++++..+...+.... .++++|+||||||||++|+++|+.+++.+. .++.++.++......+.
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~~---------~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~~vr- 82 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDGN---------MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGIDVVR- 82 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHHHHH-
Confidence 457899999998887765322 236999999999999999999999976432 23333433221111000
Q ss_pred ccCCCCCCccccccchhHHHHH------hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecC
Q psy14504 518 LIGAPPGYIGYEEGGYLTEIVR------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 591 (951)
Q Consensus 518 l~g~~~~~~g~~~~~~l~~~~~------~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 591 (951)
..+..... .....|++|||+|.++...|+.|+..++. ....+.||+++|
T Consensus 83 --------------~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~-----------~~~~t~~il~~n 137 (319)
T PLN03025 83 --------------NKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEI-----------YSNTTRFALACN 137 (319)
T ss_pred --------------HHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhc-----------ccCCceEEEEeC
Confidence 01111111 13468999999999999999999999985 334567888888
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 671 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 671 (951)
... .+.+++.+|+ .++.|.+++.+++...+...+ +..+ +.++++++
T Consensus 138 ~~~------------------------~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~-------~~eg--i~i~~~~l 183 (319)
T PLN03025 138 TSS------------------------KIIEPIQSRC-AIVRFSRLSDQEILGRLMKVV-------EAEK--VPYVPEGL 183 (319)
T ss_pred Ccc------------------------ccchhHHHhh-hcccCCCCCHHHHHHHHHHHH-------HHcC--CCCCHHHH
Confidence 533 2457899999 699999999999988854433 4456 67889999
Q ss_pred HHHHHhcccccccccccccchHHHH
Q psy14504 672 KKISNIGFDLIYGARDVHGCKKSLS 696 (951)
Q Consensus 672 ~~L~~~~~~~~~g~~dlhg~~~~l~ 696 (951)
++|+... -||+......|+
T Consensus 184 ~~i~~~~------~gDlR~aln~Lq 202 (319)
T PLN03025 184 EAIIFTA------DGDMRQALNNLQ 202 (319)
T ss_pred HHHHHHc------CCCHHHHHHHHH
Confidence 9998843 266666655554
No 170
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.63 E-value=5.9e-15 Score=171.95 Aligned_cols=206 Identities=23% Similarity=0.339 Sum_probs=139.1
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHh-------ccCCCceEEeccccc--c
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACI-------FNNEESIIRIDMSEF--I 510 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l-------~~~~~~~~~~~~~~~--~ 510 (951)
+.++||+.+++.+..++... .+ .++||+||||||||++|+++++.+ +..+.+|+.+||... .
T Consensus 65 ~~iiGqs~~i~~l~~al~~~--------~~-~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~ 135 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP--------NP-QHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFD 135 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC--------CC-ceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCC
Confidence 45899999999988664211 11 279999999999999999998764 122468999998642 2
Q ss_pred chhchhcccCCC--CCCccccc------cchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCC------C
Q psy14504 511 EKHSISRLIGAP--PGYIGYEE------GGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR------G 576 (951)
Q Consensus 511 ~~~~~~~l~g~~--~~~~g~~~------~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~------g 576 (951)
.......++|.. +.|.|... .......+..+.+++||||||+.+++..|+.|++.|+++.+.... +
T Consensus 136 ~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q~~LL~~Le~~~~~~~~~~~~~~~ 215 (531)
T TIGR02902 136 ERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQMNKLLKVLEDRKVFLDSAYYNSEN 215 (531)
T ss_pred ccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHHHHHHHHHHhCeeeeccccccccC
Confidence 211122344431 11222110 011223566778899999999999999999999999987654221 0
Q ss_pred e-----------EeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHH
Q psy14504 577 R-----------TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSI 645 (951)
Q Consensus 577 ~-----------~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i 645 (951)
. .....++.+|++|+..+.. ++|++.+|+ ..+.|+||+.+++.+|
T Consensus 216 ~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~-----------------------L~paLrsR~-~~I~f~pL~~eei~~I 271 (531)
T TIGR02902 216 PNIPSHIHDIFQNGLPADFRLIGATTRNPEE-----------------------IPPALRSRC-VEIFFRPLLDEEIKEI 271 (531)
T ss_pred cccccchhhhcccCcccceEEEEEecCCccc-----------------------CChHHhhhh-heeeCCCCCHHHHHHH
Confidence 0 0012456677777654432 578999999 5889999999999999
Q ss_pred HHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 646 ANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 646 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
++..+++ .+ +.+++++++.|.. |.+ +.|++...
T Consensus 272 l~~~a~k-------~~--i~is~~al~~I~~--y~~--n~Rel~nl 304 (531)
T TIGR02902 272 AKNAAEK-------IG--INLEKHALELIVK--YAS--NGREAVNI 304 (531)
T ss_pred HHHHHHH-------cC--CCcCHHHHHHHHH--hhh--hHHHHHHH
Confidence 7765544 33 6789999999887 544 34665555
No 171
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=2.9e-15 Score=169.53 Aligned_cols=187 Identities=17% Similarity=0.222 Sum_probs=128.3
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce-----EEeccccccchh
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI-----IRIDMSEFIEKH 513 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~-----~~~~~~~~~~~~ 513 (951)
.+.++||+.+++.+.+++...+. .+++||+||+|||||++|+++|+.++....+- .+-.|..+....
T Consensus 12 f~dliGQe~vv~~L~~a~~~~ri--------~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~ 83 (491)
T PRK14964 12 FKDLVGQDVLVRILRNAFTLNKI--------PQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSN 83 (491)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccC
Confidence 35689999999999988875432 23799999999999999999999885432211 000111111111
Q ss_pred chhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEe
Q psy14504 514 SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 589 (951)
Q Consensus 514 ~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 589 (951)
...-+.-...+..|.++.+.+.+.+.. +.+.|++|||+|.++...+|.|++.||+ +...++||++
T Consensus 84 ~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEe-----------Pp~~v~fIla 152 (491)
T PRK14964 84 HPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEE-----------PAPHVKFILA 152 (491)
T ss_pred CCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhC-----------CCCCeEEEEE
Confidence 100000011123344444444444433 3468999999999999999999999997 5577888888
Q ss_pred cCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchH
Q psy14504 590 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 669 (951)
Q Consensus 590 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 669 (951)
|+.. ..+.+.+.+|+ ..+.|.+++.+++.+.+...+ ...+ +.++++
T Consensus 153 tte~------------------------~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia-------~~Eg--i~i~~e 198 (491)
T PRK14964 153 TTEV------------------------KKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIA-------KKEN--IEHDEE 198 (491)
T ss_pred eCCh------------------------HHHHHHHHHhh-eeeecccccHHHHHHHHHHHH-------HHcC--CCCCHH
Confidence 8642 23557889999 699999999999998855544 3345 778999
Q ss_pred HHHHHHHhc
Q psy14504 670 ALKKISNIG 678 (951)
Q Consensus 670 ~~~~L~~~~ 678 (951)
+++.|++..
T Consensus 199 AL~lIa~~s 207 (491)
T PRK14964 199 SLKLIAENS 207 (491)
T ss_pred HHHHHHHHc
Confidence 999998844
No 172
>KOG0742|consensus
Probab=99.63 E-value=6.9e-15 Score=153.98 Aligned_cols=182 Identities=19% Similarity=0.247 Sum_probs=129.7
Q ss_pred hHHHHhhcchHHH----HhcCC-CCCccccHHHHHHHHHHHH--------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 25 GYLKKYTIDLTEK----ARLGK-LDPVIGRDDEIRRAIQVLQ--------RRSKNNPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 25 ~~l~~~~~~l~e~----~rp~~-l~~lvG~~~~i~~l~~~l~--------~~~~~~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
..|+.+-.++.-. .++.. |+++|-+...-+++..+.. ...-+|||||||||||||++|+.||+..
T Consensus 331 gsls~~k~~i~~~~~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S-- 408 (630)
T KOG0742|consen 331 GSLSALKHPIQGSRSASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS-- 408 (630)
T ss_pred ccHHHHhchhhhhHhhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhc--
Confidence 3455555554332 23444 8888877766555554332 1223589999999999999999999875
Q ss_pred CCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhH-Hhhhhhhc-
Q psy14504 92 GEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDA-GNMLKPEL- 169 (951)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~-~~~L~~~l- 169 (951)
+...-.+..+++- ..-.+...++..+|+.++....+.+|||||+|.++-.+......+. ...|..+|
T Consensus 409 --------GlDYA~mTGGDVA---PlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLf 477 (630)
T KOG0742|consen 409 --------GLDYAIMTGGDVA---PLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF 477 (630)
T ss_pred --------CCceehhcCCCcc---ccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHH
Confidence 4444333322221 1112456689999999998888999999999999876665443333 23344444
Q ss_pred ----cCCcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhh
Q psy14504 170 ----SRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYE 224 (951)
Q Consensus 170 ----e~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~ 224 (951)
...+++++.+||.+. .+|.++-.|++. |+|+.|..+||..+|...+.+|-
T Consensus 478 RTGdqSrdivLvlAtNrpg-----dlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 478 RTGDQSRDIVLVLATNRPG-----DLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred HhcccccceEEEeccCCcc-----chhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 356899999999999 899999999995 99999999999999987777654
No 173
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=4.8e-15 Score=170.83 Aligned_cols=185 Identities=20% Similarity=0.287 Sum_probs=126.4
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEecc---ccccchh
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDM---SEFIEKH 513 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~---~~~~~~~ 513 (951)
.+.|+||+++++.+.+++...+. .+.+||+||+|||||++|+++|+.+++.... -.+..| ..+....
T Consensus 15 f~divGq~~v~~~L~~~~~~~~l--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~ 86 (509)
T PRK14958 15 FQEVIGQAPVVRALSNALDQQYL--------HHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGR 86 (509)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCC--------CeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCC
Confidence 35689999999999999975542 2358999999999999999999999653211 000111 1111100
Q ss_pred c--hhcccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEE
Q psy14504 514 S--ISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 587 (951)
Q Consensus 514 ~--~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 587 (951)
. +-.+ ...+..|.++.+.+.+.+. ...+.|+||||+|.+++..+|.|++.||+ +..+++||
T Consensus 87 ~~d~~ei--daas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEe-----------pp~~~~fI 153 (509)
T PRK14958 87 FPDLFEV--DAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEE-----------PPSHVKFI 153 (509)
T ss_pred CceEEEE--cccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhc-----------cCCCeEEE
Confidence 0 0001 0111233333333333332 24568999999999999999999999997 55778899
Q ss_pred EecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccc
Q psy14504 588 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 667 (951)
Q Consensus 588 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~ 667 (951)
++|+... .+.+.+.+|| ..+.|.+++.+++.+.+...+ ...+ +.++
T Consensus 154 lattd~~------------------------kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il-------~~eg--i~~~ 199 (509)
T PRK14958 154 LATTDHH------------------------KLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLL-------KEEN--VEFE 199 (509)
T ss_pred EEECChH------------------------hchHHHHHHh-hhhhcCCCCHHHHHHHHHHHH-------HHcC--CCCC
Confidence 8886422 2456799999 699999999999988855544 3345 6788
Q ss_pred hHHHHHHHHhc
Q psy14504 668 KAALKKISNIG 678 (951)
Q Consensus 668 ~~~~~~L~~~~ 678 (951)
+++++.|+...
T Consensus 200 ~~al~~ia~~s 210 (509)
T PRK14958 200 NAALDLLARAA 210 (509)
T ss_pred HHHHHHHHHHc
Confidence 99999998843
No 174
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.62 E-value=4.7e-15 Score=173.31 Aligned_cols=225 Identities=21% Similarity=0.260 Sum_probs=171.7
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCC
Q psy14504 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 521 (951)
Q Consensus 442 v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 521 (951)
++|.+.+...+...+...... ..++++.|++||||+++|++++........+|+.+||..+......+.+||+
T Consensus 136 lig~s~~~~~v~~~i~~~a~~-------~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~~~lfg~ 208 (463)
T TIGR01818 136 LIGEAPAMQEVFRAIGRLSRS-------DITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIESELFGH 208 (463)
T ss_pred eeecCHHHHHHHHHHHHHhCc-------CCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHHHHhcCC
Confidence 556666666666666543211 1268999999999999999999988777889999999998766666778887
Q ss_pred CCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhh
Q psy14504 522 PPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 600 (951)
Q Consensus 522 ~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 600 (951)
..+ +.|.... ....+..+.+++||||||+.+++.+|..|++++++|.+....|......++.+|+||+.....+..
T Consensus 209 ~~~~~~~~~~~--~~g~~~~a~~gtl~l~ei~~l~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~- 285 (463)
T TIGR01818 209 EKGAFTGANTR--RQGRFEQADGGTLFLDEIGDMPLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVR- 285 (463)
T ss_pred CCCCCCCcccC--CCCcEEECCCCeEEEEchhhCCHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHH-
Confidence 654 3333221 123445667899999999999999999999999999887655544445578899999976654322
Q ss_pred ccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCC--hhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHh
Q psy14504 601 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN--RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 677 (951)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 677 (951)
.+.|+++|++|+.. .|.+|||. .+|+..++..++.++....... ...+++++++.|..
T Consensus 286 ----------------~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~- 346 (463)
T TIGR01818 286 ----------------QGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVE--PKLLDPEALERLKQ- 346 (463)
T ss_pred ----------------cCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCC--CCCcCHHHHHHHHh-
Confidence 45789999999975 99999998 6899999999998876543221 14699999999998
Q ss_pred cccccccccccccchHHHHHHH
Q psy14504 678 GFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 678 ~~~~~~g~~dlhg~~~~l~~~l 699 (951)
|.|+.+++.|..+ +++++
T Consensus 347 -~~wpgNvreL~~~---~~~~~ 364 (463)
T TIGR01818 347 -LRWPGNVRQLENL---CRWLT 364 (463)
T ss_pred -CCCCChHHHHHHH---HHHHH
Confidence 7889999999988 66665
No 175
>KOG2170|consensus
Probab=99.62 E-value=4.9e-15 Score=150.52 Aligned_cols=239 Identities=22% Similarity=0.323 Sum_probs=159.3
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14504 431 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510 (951)
Q Consensus 431 l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 510 (951)
+..|+..|...++||.-+++.+..+++..-. ...|++|+ .+-|+|+|||||+.+++.||+.++..+..- .++
T Consensus 73 ~~~Le~dL~~~lfGQHla~~~Vv~alk~~~~-n~~p~KPL-vLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S------~~V 144 (344)
T KOG2170|consen 73 LDGLEKDLARALFGQHLAKQLVVNALKSHWA-NPNPRKPL-VLSFHGWTGTGKNYVAEIIAENLYRGGLRS------PFV 144 (344)
T ss_pred chHHHHHHHHHhhchHHHHHHHHHHHHHHhc-CCCCCCCe-EEEecCCCCCchhHHHHHHHHHHHhccccc------hhH
Confidence 5568888999999999999999999986553 34588888 677999999999999999999998765432 222
Q ss_pred chhchhcccCCCCCCcc-ccc--cchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEE
Q psy14504 511 EKHSISRLIGAPPGYIG-YEE--GGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 587 (951)
Q Consensus 511 ~~~~~~~l~g~~~~~~g-~~~--~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 587 (951)
.......-|-+ +.++. +.+ .+.+.+-++.++.++++|||+|++++...+.|-..|+.-...+ -+++.++|||
T Consensus 145 ~~fvat~hFP~-~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~gLld~lkpfLdyyp~v~----gv~frkaIFI 219 (344)
T KOG2170|consen 145 HHFVATLHFPH-ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPPGLLDVLKPFLDYYPQVS----GVDFRKAIFI 219 (344)
T ss_pred HHhhhhccCCC-hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCHhHHHHHhhhhccccccc----cccccceEEE
Confidence 11000000000 00111 111 1445556678899999999999999999999999998532222 2588999999
Q ss_pred EecCCCchhhhhhccc-----------cHHHHHHHHHHHHH----hcc-ChhHh--hccCcEEEecCCChhhHHHHHHHH
Q psy14504 588 MTSNLGSDKIKEMEKG-----------DKEIIKLAVMNEVK----IYF-RPEFI--NRIDDIIVFRYLNRKNILSIANIQ 649 (951)
Q Consensus 588 ~ttn~~~~~~~~~~~~-----------~~~~~~~~~~~~~~----~~f-~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~ 649 (951)
+-||.+.+.+.++..+ ....+++.++.... ..+ ...++ .++|..|+|.|++..+...+++..
T Consensus 220 fLSN~gg~eI~~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~e 299 (344)
T KOG2170|consen 220 FLSNAGGSEIARIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAE 299 (344)
T ss_pred EEcCCcchHHHHHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHH
Confidence 9999999988876422 12233333322111 111 12222 577889999999999999996555
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHhc--ccccccccccccc
Q psy14504 650 LNILKNKLLKMNMDLKISKAALKKISNIG--FDLIYGARDVHGC 691 (951)
Q Consensus 650 l~~~~~~~~~~~~~l~~~~~~~~~L~~~~--~~~~~g~~dlhg~ 691 (951)
+ ..+| +..+++.++.+++.- |+..--+-...||
T Consensus 300 l-------~~rg--~~~d~~~~erva~~l~ffp~~~k~Fs~sGC 334 (344)
T KOG2170|consen 300 L-------RKRG--LAPDQDFVERVANSLSFFPESSKLFSSSGC 334 (344)
T ss_pred H-------Hhcc--cccchHHHHHHHHhhcccccccceeecccc
Confidence 4 4455 667777777777632 3333334445555
No 176
>KOG0728|consensus
Probab=99.62 E-value=2.8e-15 Score=147.22 Aligned_cols=163 Identities=28% Similarity=0.453 Sum_probs=122.4
Q ss_pred ccCCChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
+.+-|.+..++.+.+.+... ..|...|+ .+||+||||||||.+|+++|+.. .-.|+++.++++..
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPK----GvlLygppgtGktLlaraVahht---~c~firvsgselvq 219 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPK----GVLLYGPPGTGKTLLARAVAHHT---DCTFIRVSGSELVQ 219 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCc----ceEEecCCCCchhHHHHHHHhhc---ceEEEEechHHHHH
Confidence 45667888888888877532 23343343 49999999999999999999887 55899999999887
Q ss_pred hhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeE
Q psy14504 512 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 578 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 578 (951)
+ |+|+... +.++-.+++..++|+|.||||++. .++|.++|.++..- +|.
T Consensus 220 k------------~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnql-----dgf- 281 (404)
T KOG0728|consen 220 K------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQL-----DGF- 281 (404)
T ss_pred H------------HhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhc-----ccc-
Confidence 6 7776543 667777899999999999999875 47888888888631 111
Q ss_pred eecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHHH
Q psy14504 579 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLN 651 (951)
Q Consensus 579 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~ 651 (951)
-..++.-+|++||.-. -+.|+++ +|+|..|.|||++++...+|++-.-+
T Consensus 282 eatknikvimatnrid------------------------ild~allrpgridrkiefp~p~e~ar~~ilkihsr 332 (404)
T KOG0728|consen 282 EATKNIKVIMATNRID------------------------ILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSR 332 (404)
T ss_pred ccccceEEEEeccccc------------------------cccHhhcCCCcccccccCCCCCHHHHHHHHHHhhh
Confidence 1346778999999621 2445555 79999999999999988888664433
No 177
>KOG0990|consensus
Probab=99.62 E-value=6.5e-15 Score=150.98 Aligned_cols=211 Identities=15% Similarity=0.143 Sum_probs=162.7
Q ss_pred hHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEE
Q psy14504 25 GYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 104 (951)
Q Consensus 25 ~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~ 104 (951)
+.-.....+|.|+|||..+++++++++.+..+..+....+.+|.|+|||||||||+.+.+.|..+++...+ +..+.
T Consensus 22 p~~~~~~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh~L~YgPPGtGktsti~a~a~~ly~~~~~----~~m~l 97 (360)
T KOG0990|consen 22 PQSPQYPQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPHLLFYGPPGTGKTSTILANARDFYSPHPT----TSMLL 97 (360)
T ss_pred CCCcccCCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCcccccCCCCCCCCCchhhhhhhhcCCCCc----hhHHH
Confidence 34456788999999999999999999999999999888888999999999999999999999998653111 11233
Q ss_pred EEehhhhhcCccccccHHHHHHHHHHHHHh------cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEE
Q psy14504 105 LLDIALLLAGTKYRGEFEDRLKKILKEISN------NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHC 176 (951)
Q Consensus 105 ~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~------~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~v 176 (951)
+++.++- ..++-.+. -...|..... ......+++||+|.+. .+++++|++.++. ..+++
T Consensus 98 elnaSd~----rgid~vr~-qi~~fast~~~~~fst~~~fKlvILDEADaMT--------~~AQnALRRviek~t~n~rF 164 (360)
T KOG0990|consen 98 ELNASDD----RGIDPVRQ-QIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------RDAQNALRRVIEKYTANTRF 164 (360)
T ss_pred HhhccCc----cCCcchHH-HHHHHHhhccceeccccCceeEEEecchhHhh--------HHHHHHHHHHHHHhccceEE
Confidence 3333332 12222221 2223333321 1256799999999995 4889999998874 45677
Q ss_pred EEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhH
Q psy14504 177 IGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKA 256 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a 256 (951)
+..+|++. .+.|++++||+.++|.+.+.++....+.++++. .....+++...++++++.+.+ +.+
T Consensus 165 ~ii~n~~~-----ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~----e~~~~~~~~~~a~~r~s~gDm------r~a 229 (360)
T KOG0990|consen 165 ATISNPPQ-----KIHPAQQSRCTRFRFAPLTMAQQTERQSHIRES----EQKETNPEGYSALGRLSVGDM------RVA 229 (360)
T ss_pred EEeccChh-----hcCchhhcccccCCCCCCChhhhhhHHHHHHhc----chhhcCHHHHHHHHHHhHHHH------HHH
Confidence 77788888 899999999999999999999999999888874 567788999999999999988 888
Q ss_pred HHHHHHHHHHh
Q psy14504 257 IDLIDEAAAKI 267 (951)
Q Consensus 257 ~~ll~~a~~~~ 267 (951)
.+.|+......
T Consensus 230 ~n~Lqs~~~~~ 240 (360)
T KOG0990|consen 230 LNYLQSILKKV 240 (360)
T ss_pred HHHHHHHHHHh
Confidence 88888776654
No 178
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.62 E-value=7.2e-15 Score=167.51 Aligned_cols=199 Identities=21% Similarity=0.317 Sum_probs=129.5
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce----E-Eeccccccchh-
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI----I-RIDMSEFIEKH- 513 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~----~-~~~~~~~~~~~- 513 (951)
+.++||++++..+...+...+ ..+++||+||||||||++|+++|+.+....... - +-.|..+....
T Consensus 14 ~divGq~~i~~~L~~~i~~~~--------l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~ 85 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS--------ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTF 85 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCC
Confidence 568999999999988877443 223589999999999999999999985432110 0 00010000000
Q ss_pred -chhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 514 -SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 514 -~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
.+..+ . .....|.++.+.+.+.+.. +...||||||+|.++...++.|+..+++ +..++++|+
T Consensus 86 ~dv~el-~-aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~-----------p~~~vv~Il 152 (472)
T PRK14962 86 MDVIEL-D-AASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEE-----------PPSHVVFVL 152 (472)
T ss_pred CccEEE-e-CcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHh-----------CCCcEEEEE
Confidence 00001 0 0112222222333333332 3457999999999999999999999996 445677887
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
+|+... .+.+.+.+|+ .++.|.|++.+++..++...+ ...+ +.+++
T Consensus 153 attn~~------------------------kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~-------~~eg--i~i~~ 198 (472)
T PRK14962 153 ATTNLE------------------------KVPPTIISRC-QVIEFRNISDELIIKRLQEVA-------EAEG--IEIDR 198 (472)
T ss_pred EeCChH------------------------hhhHHHhcCc-EEEEECCccHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 776321 2467899999 699999999999988855544 3345 67899
Q ss_pred HHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 669 AALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 669 ~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
+++++|+... -+|+......|+++.
T Consensus 199 eal~~Ia~~s------~GdlR~aln~Le~l~ 223 (472)
T PRK14962 199 EALSFIAKRA------SGGLRDALTMLEQVW 223 (472)
T ss_pred HHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence 9999999843 244444444465544
No 179
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.62 E-value=8e-15 Score=170.70 Aligned_cols=185 Identities=19% Similarity=0.274 Sum_probs=126.5
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC--ceEEeccc---cccchh
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMS---EFIEKH 513 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~---~~~~~~ 513 (951)
.+.|+||+.+++.|.+.+...+. .+.+||+||+|||||++|+++|+.+++... ..-+..|. .+....
T Consensus 15 f~divGQe~vv~~L~~~l~~~rl--------~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i~~g~ 86 (647)
T PRK07994 15 FAEVVGQEHVLTALANALDLGRL--------HHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREIEQGR 86 (647)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHHHcCC
Confidence 36788999999999999985442 134799999999999999999999965311 00111111 111100
Q ss_pred chh-cccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 514 SIS-RLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 514 ~~~-~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
... ..+. ....++.++.+.+.+.+. ...+.|+||||+|.++...+|.||+.||+ +..+++||+
T Consensus 87 ~~D~ieid-aas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEE-----------Pp~~v~FIL 154 (647)
T PRK07994 87 FVDLIEID-AASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFLL 154 (647)
T ss_pred CCCceeec-ccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHc-----------CCCCeEEEE
Confidence 000 0000 011223333333433332 24578999999999999999999999998 667888998
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
+|+... .+.+.+++|| ..+.|.+++.+++...+...+.. .+ +.+++
T Consensus 155 ~Tt~~~------------------------kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~-------e~--i~~e~ 200 (647)
T PRK07994 155 ATTDPQ------------------------KLPVTILSRC-LQFHLKALDVEQIRQQLEHILQA-------EQ--IPFEP 200 (647)
T ss_pred ecCCcc------------------------ccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHH-------cC--CCCCH
Confidence 888533 3467899999 79999999999999886655532 34 67788
Q ss_pred HHHHHHHHh
Q psy14504 669 AALKKISNI 677 (951)
Q Consensus 669 ~~~~~L~~~ 677 (951)
+++..|+..
T Consensus 201 ~aL~~Ia~~ 209 (647)
T PRK07994 201 RALQLLARA 209 (647)
T ss_pred HHHHHHHHH
Confidence 888888874
No 180
>KOG2028|consensus
Probab=99.62 E-value=2.9e-15 Score=154.72 Aligned_cols=192 Identities=16% Similarity=0.294 Sum_probs=129.3
Q ss_pred cCCChHHHHHH---HHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhc
Q psy14504 441 RVVGQDEAISA---VSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISR 517 (951)
Q Consensus 441 ~v~Gq~~~~~~---l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~ 517 (951)
.++||++++.. +...+...+ .++++|+||||||||++|+.|+...-.....|+.+....-
T Consensus 139 dyvGQ~hlv~q~gllrs~ieq~~---------ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-------- 201 (554)
T KOG2028|consen 139 DYVGQSHLVGQDGLLRSLIEQNR---------IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-------- 201 (554)
T ss_pred HhcchhhhcCcchHHHHHHHcCC---------CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc--------
Confidence 34577666633 333444332 3479999999999999999999887444444554443211
Q ss_pred ccCCCCCCccccccchhHHHHH-----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCC
Q psy14504 518 LIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 592 (951)
Q Consensus 518 l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 592 (951)
+..+-+.+++..+ .....|||||||++++...|+.||..+|+|.++ +|.+|.-
T Consensus 202 ---------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~-------------lIGATTE 259 (554)
T KOG2028|consen 202 ---------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENGDIT-------------LIGATTE 259 (554)
T ss_pred ---------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccCceE-------------EEecccC
Confidence 1111122222221 123579999999999999999999999987543 6666654
Q ss_pred CchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHh-cC---Cccccch
Q psy14504 593 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK-MN---MDLKISK 668 (951)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~-~~---~~l~~~~ 668 (951)
.+. ..+..+|++|| .++.+.+|..+++..|+.+.+..+..--+. .+ -.+.+++
T Consensus 260 NPS----------------------Fqln~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~ 316 (554)
T KOG2028|consen 260 NPS----------------------FQLNAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVED 316 (554)
T ss_pred CCc----------------------cchhHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhH
Confidence 332 23567899999 699999999999999998877765432111 12 2357899
Q ss_pred HHHHHHHHhcccccccccccccchHHHHHHHH
Q psy14504 669 AALKKISNIGFDLIYGARDVHGCKKSLSILLK 700 (951)
Q Consensus 669 ~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~ 700 (951)
.++++|+. ...||-...+..|+-.+.
T Consensus 317 siidyla~------lsdGDaR~aLN~Lems~~ 342 (554)
T KOG2028|consen 317 SIIDYLAY------LSDGDARAALNALEMSLS 342 (554)
T ss_pred HHHHHHHH------hcCchHHHHHHHHHHHHH
Confidence 99999988 346777777777776643
No 181
>PRK15115 response regulator GlrR; Provisional
Probab=99.62 E-value=6.2e-15 Score=171.21 Aligned_cols=226 Identities=16% Similarity=0.171 Sum_probs=166.8
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccC
Q psy14504 441 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 520 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 520 (951)
.++|.+..+..+...+...... ..+++++|++|||||++|+++++.....+.+|+.++|..+........+||
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~-------~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg 207 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQS-------DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFG 207 (444)
T ss_pred cccccCHHHHHHHHHHHhhccC-------CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcC
Confidence 3556666665555544432211 125899999999999999999999877778999999999877666677888
Q ss_pred CCCCC-ccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhh
Q psy14504 521 APPGY-IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 599 (951)
Q Consensus 521 ~~~~~-~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 599 (951)
+..+. .|.... ....+..+.+++||||||+.+++..|..|+.+++++.+....+......++.+|+||+.......
T Consensus 208 ~~~~~~~~~~~~--~~g~~~~a~~gtl~l~~i~~l~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~- 284 (444)
T PRK15115 208 HARGAFTGAVSN--REGLFQAAEGGTLFLDEIGDMPAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAM- 284 (444)
T ss_pred CCcCCCCCCccC--CCCcEEECCCCEEEEEccccCCHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHH-
Confidence 76542 222211 12334566779999999999999999999999999887644333333457889999997543321
Q ss_pred hccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Q psy14504 600 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 676 (951)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~ 676 (951)
..+.|+++++.|++. .|.+|||.+ +|+..++...+.++....... ...+++++++.|..
T Consensus 285 ----------------~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~ 346 (444)
T PRK15115 285 ----------------ARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPF--VRAFSTDAMKRLMT 346 (444)
T ss_pred ----------------HcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCC--CCCcCHHHHHHHHh
Confidence 245799999999965 788899876 789999999888875543221 23699999999998
Q ss_pred hcccccccccccccchHHHHHHH
Q psy14504 677 IGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 677 ~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
|+|+.+++.+..+ +++++
T Consensus 347 --~~WpgNvreL~~~---i~~~~ 364 (444)
T PRK15115 347 --ASWPGNVRQLVNV---IEQCV 364 (444)
T ss_pred --CCCCChHHHHHHH---HHHHH
Confidence 8889889998888 66665
No 182
>cd07420 MPP_RdgC Drosophila melanogaster RdgC and related proteins, metallophosphatase domain. RdgC (retinal degeneration C) is a vertebrate serine-threonine protein phosphatase that is required to prevent light-induced retinal degeneration. In addition to its catalytic domain, RdgC has two C-terminal EF hands. Homologs of RdgC include the human phosphatases protein phosphatase with EF hands 1 and -2 (PPEF-1 and -2). PPEF-1 transcripts are present at low levels in the retina, PPEF-2 transcripts and PPEF-2 protein are present at high levels in photoreceptors. The PPP (phosphoprotein phosphatase) family, to which RdgC belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all
Probab=99.62 E-value=3.1e-15 Score=160.37 Aligned_cols=129 Identities=22% Similarity=0.367 Sum_probs=98.6
Q ss_pred cccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhh
Q psy14504 680 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLIN 755 (951)
Q Consensus 680 ~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~ 755 (951)
.+.+.+|||||++.+|.++++..++.+..+.++|+||++|||+.+++|+.+++++ +++++++|||||.+.+....+
T Consensus 51 ~~~~vvGDiHG~~~dL~~il~~~g~~~~~~~~lFLGDyVDRG~~s~Evl~ll~~lk~~~p~~v~llRGNHE~~~~~~~yG 130 (321)
T cd07420 51 KQVTICGDLHGKLDDLFLIFYKNGLPSPENPYVFNGDFVDRGKRSIEILIILFAFFLVYPNEVHLNRGNHEDHIMNLRYG 130 (321)
T ss_pred CCeEEEEeCCCCHHHHHHHHHHcCCCCccceEEEeccccCCCCCcHHHHHHHHHHhhcCCCcEEEecCchhhhhhhhhcC
Confidence 3678999999999999999999988666688999999999999999999999887 457899999999998764433
Q ss_pred cccCCccccHHHhhC--CCCHHHHHHHHhcCCceEEe-CCEEEEecccCcCCCHHHHHHH
Q psy14504 756 INKKSKLDTFDDILD--APDKKKLVSWLRTQPLAIYY-KKYLMIHAGVAKQWTAQQTIKL 812 (951)
Q Consensus 756 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~p~~~~~-~~~~~vHAG~~p~~~~~~~~~~ 812 (951)
.. .+....+-. ......+.+++..||++... +++++||||++|.++.++...+
T Consensus 131 f~----~e~~~~y~~~~~~l~~~~~~~F~~LPlaaii~~~i~cvHGGi~~~~~l~~i~~i 186 (321)
T cd07420 131 FT----KEVMSKYKLHGKKILRLLEDVFSWLPLATIIDNKILVVHGGISDSTDLDLLDKI 186 (321)
T ss_pred hH----HHHHHHhCccHHHHHHHHHHHHHhCCceEEEcCCEEEEeCCCCCccCHHHHHhh
Confidence 21 011111110 11235688999999999665 5699999999987666544433
No 183
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=1e-14 Score=169.12 Aligned_cols=187 Identities=19% Similarity=0.263 Sum_probs=127.8
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce--EEecc---ccccch-
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDM---SEFIEK- 512 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~---~~~~~~- 512 (951)
.+.|+||+++++.|.+++...+. .+.+||+||+|||||++|+++|+.+++...+- -+..| ..+...
T Consensus 12 f~eivGq~~i~~~L~~~i~~~r~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~~~ 83 (584)
T PRK14952 12 FAEVVGQEHVTEPLSSALDAGRI--------NHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVALAPNG 83 (584)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHhhccc
Confidence 35688999999999999975432 22479999999999999999999986532110 11111 111110
Q ss_pred -hchhcccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEE
Q psy14504 513 -HSISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 587 (951)
Q Consensus 513 -~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 587 (951)
....-+.-......|.++.+.+.+.+. .+.+.|+||||+|.++...+|.||+.||+ +..+++||
T Consensus 84 ~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEE-----------pp~~~~fI 152 (584)
T PRK14952 84 PGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEE-----------PPEHLIFI 152 (584)
T ss_pred CCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhc-----------CCCCeEEE
Confidence 000000001111223344444444443 34578999999999999999999999997 66788899
Q ss_pred EecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccc
Q psy14504 588 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 667 (951)
Q Consensus 588 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~ 667 (951)
++|+... .+.+.+.+|+ ..+.|.+++.+++.+.+...+ ...+ +.++
T Consensus 153 L~tte~~------------------------kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~-------~~eg--i~i~ 198 (584)
T PRK14952 153 FATTEPE------------------------KVLPTIRSRT-HHYPFRLLPPRTMRALIARIC-------EQEG--VVVD 198 (584)
T ss_pred EEeCChH------------------------hhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHH-------HHcC--CCCC
Confidence 8886532 3457899998 699999999999988854444 3345 6788
Q ss_pred hHHHHHHHHhc
Q psy14504 668 KAALKKISNIG 678 (951)
Q Consensus 668 ~~~~~~L~~~~ 678 (951)
++++.+++..+
T Consensus 199 ~~al~~Ia~~s 209 (584)
T PRK14952 199 DAVYPLVIRAG 209 (584)
T ss_pred HHHHHHHHHHc
Confidence 99999998843
No 184
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.61 E-value=5.8e-15 Score=180.45 Aligned_cols=180 Identities=20% Similarity=0.265 Sum_probs=129.9
Q ss_pred CCC-CccccHHHHHHHHHHHHc------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-
Q psy14504 42 KLD-PVIGRDDEIRRAIQVLQR------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA- 113 (951)
Q Consensus 42 ~l~-~lvG~~~~i~~l~~~l~~------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~- 113 (951)
.|+ +++|++.+.+++..++.. ....++||+||||||||++|+++|+.+ +.+++.++++....
T Consensus 317 ~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l----------~~~~~~i~~~~~~~~ 386 (775)
T TIGR00763 317 ILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKAL----------NRKFVRFSLGGVRDE 386 (775)
T ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHh----------cCCeEEEeCCCcccH
Confidence 455 588999999988876542 133469999999999999999999998 66777776543210
Q ss_pred ------CccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC----------------
Q psy14504 114 ------GTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---------------- 171 (951)
Q Consensus 114 ------~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~---------------- 171 (951)
...|.|.....+...+..+.. ..| |+||||||.+.+... .+..+.|++.++.
T Consensus 387 ~~i~g~~~~~~g~~~g~i~~~l~~~~~-~~~-villDEidk~~~~~~----~~~~~aLl~~ld~~~~~~f~d~~~~~~~d 460 (775)
T TIGR00763 387 AEIRGHRRTYVGAMPGRIIQGLKKAKT-KNP-LFLLDEIDKIGSSFR----GDPASALLEVLDPEQNNAFSDHYLDVPFD 460 (775)
T ss_pred HHHcCCCCceeCCCCchHHHHHHHhCc-CCC-EEEEechhhcCCccC----CCHHHHHHHhcCHHhcCccccccCCceec
Confidence 124566655666677776642 334 899999999976321 1233455555531
Q ss_pred -CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHH-hhhhh-----cCCCCChHHHHHHHHH
Q psy14504 172 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQK-KYEVH-----HGVEITDPAIVAASEL 242 (951)
Q Consensus 172 -~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~-~~~~~-----~~~~i~~~~l~~~~~~ 242 (951)
+++++|+|||... .++++|++||..|.|+.|+.+++..|++..+. +.... .++.++++++..+++.
T Consensus 461 ~s~v~~I~TtN~~~-----~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~ 533 (775)
T TIGR00763 461 LSKVIFIATANSID-----TIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKY 533 (775)
T ss_pred cCCEEEEEecCCch-----hCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHh
Confidence 4688999999887 89999999999999999999999999976542 21111 2467899999988874
No 185
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=6.1e-15 Score=169.34 Aligned_cols=201 Identities=18% Similarity=0.273 Sum_probs=132.4
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEecc---ccccchh
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDM---SEFIEKH 513 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~---~~~~~~~ 513 (951)
.+.++||+.+++.+..++...+. .+.+||+||+|||||++|+++|+.+++.... -.+..| ..+....
T Consensus 15 f~diiGq~~~v~~L~~~i~~~rl--------~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~ 86 (546)
T PRK14957 15 FAEVAGQQHALNSLVHALETQKV--------HHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNS 86 (546)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCC
Confidence 35688999999999999875432 2358999999999999999999998642110 001111 1111000
Q ss_pred chhcccC-CCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 514 SISRLIG-APPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 514 ~~~~l~g-~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
...++. .....+|.++.+.+.+.+. ...+.|+||||+|+++...++.|++.||+ +...++||+
T Consensus 87 -~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEe-----------pp~~v~fIL 154 (546)
T PRK14957 87 -FIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEE-----------PPEYVKFIL 154 (546)
T ss_pred -CCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhc-----------CCCCceEEE
Confidence 000000 0111233333334433333 24578999999999999999999999997 456777887
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
+|+.. ..+.+.+.+|| .++.|.+++.+++.+.+...+.+ .+ +.+++
T Consensus 155 ~Ttd~------------------------~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~-------eg--i~~e~ 200 (546)
T PRK14957 155 ATTDY------------------------HKIPVTILSRC-IQLHLKHISQADIKDQLKIILAK-------EN--INSDE 200 (546)
T ss_pred EECCh------------------------hhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCH
Confidence 77642 12346699999 79999999999999885554433 45 67899
Q ss_pred HHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 669 AALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 669 ~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
++++.|+..+ -||+...+..+++++
T Consensus 201 ~Al~~Ia~~s------~GdlR~alnlLek~i 225 (546)
T PRK14957 201 QSLEYIAYHA------KGSLRDALSLLDQAI 225 (546)
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 9999999843 244444444466555
No 186
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.61 E-value=2e-14 Score=170.08 Aligned_cols=214 Identities=18% Similarity=0.199 Sum_probs=144.8
Q ss_pred hhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 30 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 30 ~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
.+.++.+.+||.+|++++|++..++.+...+....+.+++|+|||||||||+|+++++............+.+++.+++.
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~ 219 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGT 219 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEech
Confidence 44788889999999999999999999988887777889999999999999999999887632211111124567777765
Q ss_pred hhhcCc-----cccccHH----HHHHHHHHHH---------HhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC
Q psy14504 110 LLLAGT-----KYRGEFE----DRLKKILKEI---------SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR 171 (951)
Q Consensus 110 ~l~~~~-----~~~g~~~----~~l~~~~~~a---------~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~ 171 (951)
.+.... ...|... ...+..+... .....+.+|||||++.|.+ ..+..|+..++.
T Consensus 220 ~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~--------~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 220 TLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP--------LLQNKLLKVLED 291 (615)
T ss_pred hccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH--------HHHHHHHHHHhh
Confidence 432100 0111110 0011111100 0011245999999998843 445556655543
Q ss_pred C------------------------------cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHH
Q psy14504 172 G------------------------------ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQK 221 (951)
Q Consensus 172 ~------------------------------~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~ 221 (951)
+ .+++|++|+... ..++++|++||..+.|++++.+++..|++..+.
T Consensus 292 ~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~----~~l~~aLrSR~~~i~~~pls~edi~~Il~~~a~ 367 (615)
T TIGR02903 292 KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDP----EEINPALRSRCAEVFFEPLTPEDIALIVLNAAE 367 (615)
T ss_pred CeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccc----cccCHHHHhceeEEEeCCCCHHHHHHHHHHHHH
Confidence 2 367777776543 168899999999999999999999999998877
Q ss_pred hhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHH
Q psy14504 222 KYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 222 ~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~ 266 (951)
+. ++.+++++++.+...+.. ++++++.+..++..
T Consensus 368 ~~----~v~ls~eal~~L~~ys~~-------gRraln~L~~~~~~ 401 (615)
T TIGR02903 368 KI----NVHLAAGVEELIARYTIE-------GRKAVNILADVYGY 401 (615)
T ss_pred Hc----CCCCCHHHHHHHHHCCCc-------HHHHHHHHHHHHHH
Confidence 53 567889888888776431 25667777666543
No 187
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.61 E-value=8.3e-15 Score=176.32 Aligned_cols=200 Identities=18% Similarity=0.246 Sum_probs=133.7
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEecccc---ccch-
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSE---FIEK- 512 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~---~~~~- 512 (951)
...||||+.+++.|.+.+...+. .+.+||+||+|||||++|++||+.+++...+ --+..|.. +...
T Consensus 14 f~eiiGqe~v~~~L~~~i~~~ri--------~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~ 85 (824)
T PRK07764 14 FAEVIGQEHVTEPLSTALDSGRI--------NHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGG 85 (824)
T ss_pred HHHhcCcHHHHHHHHHHHHhCCC--------CceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCC
Confidence 35688999999999999985442 1358999999999999999999999653211 01111211 1100
Q ss_pred ---hchhcccCCCCCCccccccchhHHHH----HhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeE
Q psy14504 513 ---HSISRLIGAPPGYIGYEEGGYLTEIV----RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTI 585 (951)
Q Consensus 513 ---~~~~~l~g~~~~~~g~~~~~~l~~~~----~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~i 585 (951)
..+..+-+ ...+|.++.+.+.+.+ ....+.|+||||+|+++...+|.||++||+ ...+++
T Consensus 86 ~~~~dv~eida--as~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEE-----------pP~~~~ 152 (824)
T PRK07764 86 PGSLDVTEIDA--ASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEE-----------PPEHLK 152 (824)
T ss_pred CCCCcEEEecc--cccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhC-----------CCCCeE
Confidence 00001100 1122333333343332 235678999999999999999999999997 557888
Q ss_pred EEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccc
Q psy14504 586 IVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLK 665 (951)
Q Consensus 586 iI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~ 665 (951)
||++|+... .+.+.+.+|| .++.|.+++.+++.+++...+ +..+ +.
T Consensus 153 fIl~tt~~~------------------------kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il-------~~EG--v~ 198 (824)
T PRK07764 153 FIFATTEPD------------------------KVIGTIRSRT-HHYPFRLVPPEVMRGYLERIC-------AQEG--VP 198 (824)
T ss_pred EEEEeCChh------------------------hhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHH-------HHcC--CC
Confidence 998886422 2456788999 799999999999998855443 4445 67
Q ss_pred cchHHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 666 ISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 666 ~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
++++++.+|+.... +|+...+..|++++
T Consensus 199 id~eal~lLa~~sg------GdlR~Al~eLEKLi 226 (824)
T PRK07764 199 VEPGVLPLVIRAGG------GSVRDSLSVLDQLL 226 (824)
T ss_pred CCHHHHHHHHHHcC------CCHHHHHHHHHHHH
Confidence 89999999988542 33433333466655
No 188
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.61 E-value=7.5e-15 Score=170.72 Aligned_cols=186 Identities=18% Similarity=0.263 Sum_probs=125.7
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc----e------EEecccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES----I------IRIDMSE 508 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~----~------~~~~~~~ 508 (951)
.+.|+||+++++.|.+++...+. .+.+||+||+|||||++|+++|+.+++.+.. . .+-.|..
T Consensus 15 f~dviGQe~vv~~L~~~l~~~rl--------~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~~C~~ 86 (618)
T PRK14951 15 FSEMVGQEHVVQALTNALTQQRL--------HHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQACRD 86 (618)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccHHHHH
Confidence 35678999999999999986542 1357999999999999999999999653210 0 0011111
Q ss_pred ccchhchhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCe
Q psy14504 509 FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 584 (951)
Q Consensus 509 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 584 (951)
+.......-+.-......|.++.+.+.+.+.. ..+.|++|||+|.++...+|.|++.||+ ...++
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEE-----------PP~~~ 155 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEE-----------PPEYL 155 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhccc-----------CCCCe
Confidence 11110000000001112232233333333332 3478999999999999999999999997 55678
Q ss_pred EEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCcc
Q psy14504 585 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDL 664 (951)
Q Consensus 585 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l 664 (951)
+||++|+.... +.+.+++|| .++.|.+++.+++.+.+...+ ...+ +
T Consensus 156 ~fIL~Ttd~~k------------------------il~TIlSRc-~~~~f~~Ls~eei~~~L~~i~-------~~eg--i 201 (618)
T PRK14951 156 KFVLATTDPQK------------------------VPVTVLSRC-LQFNLRPMAPETVLEHLTQVL-------AAEN--V 201 (618)
T ss_pred EEEEEECCchh------------------------hhHHHHHhc-eeeecCCCCHHHHHHHHHHHH-------HHcC--C
Confidence 88888865332 346789999 799999999999998855444 3445 6
Q ss_pred ccchHHHHHHHHh
Q psy14504 665 KISKAALKKISNI 677 (951)
Q Consensus 665 ~~~~~~~~~L~~~ 677 (951)
.++++++.+|+..
T Consensus 202 ~ie~~AL~~La~~ 214 (618)
T PRK14951 202 PAEPQALRLLARA 214 (618)
T ss_pred CCCHHHHHHHHHH
Confidence 7899999999884
No 189
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.61 E-value=8.2e-14 Score=154.22 Aligned_cols=180 Identities=17% Similarity=0.299 Sum_probs=127.7
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.++||++.++.+...+...... ..+..+++|+||||||||++|+++|+.+ +..+...+.+.+...
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~GppG~GKT~la~~ia~~l---~~~~~~~~~~~~~~~------- 90 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKR----GEALDHVLLYGPPGLGKTTLANIIANEM---GVNIRITSGPALEKP------- 90 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhc----CCCCCcEEEECCCCccHHHHHHHHHHHh---CCCeEEEecccccCh-------
Confidence 56889999999999888754421 2334479999999999999999999998 444444443322111
Q ss_pred CCCCCCccccccchhHHHHH-hCCCeEEEEccccccCHHHHHHHHHHhhcceee--cCCC---e--EeecCCeEEEEecC
Q psy14504 520 GAPPGYIGYEEGGYLTEIVR-RKPYSLILLDEIEKANSDVFNILLQILDDGRLT--DNRG---R--TINFRNTIIVMTSN 591 (951)
Q Consensus 520 g~~~~~~g~~~~~~l~~~~~-~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~--~~~g---~--~~~~~~~iiI~ttn 591 (951)
..+...+. ...++||||||||.+++..++.|+..|++..+. ...+ . ........+|++||
T Consensus 91 ------------~~l~~~l~~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~ 158 (328)
T PRK00080 91 ------------GDLAAILTNLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATT 158 (328)
T ss_pred ------------HHHHHHHHhcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecC
Confidence 11222222 245789999999999999999999999875432 1111 1 12234567788887
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 671 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 671 (951)
... .+.+++.+||..++.|.+++.+++.+|+...... .+ +.++++++
T Consensus 159 ~~~------------------------~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~-------~~--~~~~~~~~ 205 (328)
T PRK00080 159 RAG------------------------LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARI-------LG--VEIDEEGA 205 (328)
T ss_pred Ccc------------------------cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHH-------cC--CCcCHHHH
Confidence 532 3567899999889999999999999997755543 23 77899999
Q ss_pred HHHHHhc
Q psy14504 672 KKISNIG 678 (951)
Q Consensus 672 ~~L~~~~ 678 (951)
++|++.+
T Consensus 206 ~~ia~~~ 212 (328)
T PRK00080 206 LEIARRS 212 (328)
T ss_pred HHHHHHc
Confidence 9999853
No 190
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.60 E-value=1e-14 Score=162.98 Aligned_cols=186 Identities=18% Similarity=0.267 Sum_probs=122.1
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC----ce-EEeccccccchh
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SI-IRIDMSEFIEKH 513 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~----~~-~~~~~~~~~~~~ 513 (951)
.+.|+||+++++.+.+++...+. .+.+||+||||||||++|+++|+.+++... +. .+..|.++....
T Consensus 15 ~~~iiGq~~~~~~l~~~~~~~~~--------~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~ 86 (363)
T PRK14961 15 FRDIIGQKHIVTAISNGLSLGRI--------HHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGL 86 (363)
T ss_pred hhhccChHHHHHHHHHHHHcCCC--------CeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCC
Confidence 35689999999999998875331 235799999999999999999999854211 00 001111111110
Q ss_pred chhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEe
Q psy14504 514 SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 589 (951)
Q Consensus 514 ~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 589 (951)
...-....+....+.+..+.+.+.+.. ....|+||||+|+++...++.|++.+++ +..++.||++
T Consensus 87 ~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe-----------~~~~~~fIl~ 155 (363)
T PRK14961 87 CLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPQHIKFILA 155 (363)
T ss_pred CCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCeEEEEE
Confidence 000000000001122222223233222 2357999999999999999999999997 4456778888
Q ss_pred cCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchH
Q psy14504 590 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 669 (951)
Q Consensus 590 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 669 (951)
|+... .+.+.+.+|+ ..+.|.|++.+++.+++...+ +..+ +.++++
T Consensus 156 t~~~~------------------------~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~-------~~~g--~~i~~~ 201 (363)
T PRK14961 156 TTDVE------------------------KIPKTILSRC-LQFKLKIISEEKIFNFLKYIL-------IKES--IDTDEY 201 (363)
T ss_pred cCChH------------------------hhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHH-------HHcC--CCCCHH
Confidence 76421 2567889999 799999999999998855544 3334 678999
Q ss_pred HHHHHHHh
Q psy14504 670 ALKKISNI 677 (951)
Q Consensus 670 ~~~~L~~~ 677 (951)
+++.++..
T Consensus 202 al~~ia~~ 209 (363)
T PRK14961 202 ALKLIAYH 209 (363)
T ss_pred HHHHHHHH
Confidence 99999884
No 191
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.60 E-value=1.6e-14 Score=153.11 Aligned_cols=141 Identities=14% Similarity=0.154 Sum_probs=101.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCcccccc--chhHHHHHh-----CCC
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRR-----KPY 543 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~-----~~~ 543 (951)
..++|+||||||||.+|+++|..+ +.+++.++.+++.++ |+|+++. +.++..++. ..+
T Consensus 149 lgllL~GPPGcGKTllAraiA~el---g~~~i~vsa~eL~sk------------~vGEsEk~IR~~F~~A~~~a~~~~aP 213 (413)
T PLN00020 149 LILGIWGGKGQGKSFQCELVFKKM---GIEPIVMSAGELESE------------NAGEPGKLIRQRYREAADIIKKKGKM 213 (413)
T ss_pred eEEEeeCCCCCCHHHHHHHHHHHc---CCCeEEEEHHHhhcC------------cCCcHHHHHHHHHHHHHHHhhccCCC
Confidence 378999999999999999999999 789999999998764 8888775 444444432 358
Q ss_pred eEEEEccccccCH-----------HH-HHHHHHHhhcceeecCCC---eEeecCCeEEEEecCCCchhhhhhccccHHHH
Q psy14504 544 SLILLDEIEKANS-----------DV-FNILLQILDDGRLTDNRG---RTINFRNTIIVMTSNLGSDKIKEMEKGDKEII 608 (951)
Q Consensus 544 ~vl~iDEid~~~~-----------~~-~~~Ll~~le~g~~~~~~g---~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~ 608 (951)
|||||||||.+.+ .+ ..+|+.++|+-...-..| ..-....+.||+|||.+..
T Consensus 214 cVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~------------- 280 (413)
T PLN00020 214 SCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFST------------- 280 (413)
T ss_pred eEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCccc-------------
Confidence 9999999997653 22 367888887411100001 0113467889999997553
Q ss_pred HHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 609 KLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 609 ~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
+.|+|+. |||..+ ..++.++..+|++..+++
T Consensus 281 -----------LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~ 313 (413)
T PLN00020 281 -----------LYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRD 313 (413)
T ss_pred -----------CCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhcc
Confidence 5678886 999764 478999999997765543
No 192
>KOG0739|consensus
Probab=99.59 E-value=8.8e-15 Score=147.37 Aligned_cols=194 Identities=18% Similarity=0.302 Sum_probs=134.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~---~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
..|.|.+.|++++.+++...-. .+...++|...+||+|||||||+.||+++|.+. +..|+++.-++++.+
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA---nSTFFSvSSSDLvSK---- 205 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK---- 205 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc---CCceEEeehHHHHHH----
Confidence 4567888888888887743211 122345688899999999999999999999988 568888888887765
Q ss_pred cccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeEeecCC
Q psy14504 517 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 583 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 583 (951)
|.|+++. +.+++.++++.++||||||||.+. +.+-..||-.|+ |.- .+...
T Consensus 206 --------WmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMq-GVG-------~d~~g 269 (439)
T KOG0739|consen 206 --------WMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQ-GVG-------NDNDG 269 (439)
T ss_pred --------HhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhh-ccc-------cCCCc
Confidence 6777776 788999999999999999999764 345556666665 222 24456
Q ss_pred eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 584 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 584 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
++++.+||.+.. +...+..||+..|.++-+........++..+. ...
T Consensus 270 vLVLgATNiPw~------------------------LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG---------~tp 316 (439)
T KOG0739|consen 270 VLVLGATNIPWV------------------------LDSAIRRRFEKRIYIPLPEAHARARMFKLHLG---------DTP 316 (439)
T ss_pred eEEEecCCCchh------------------------HHHHHHHHhhcceeccCCcHHHhhhhheeccC---------CCc
Confidence 788889998653 34567788877777776666555555333221 122
Q ss_pred cccchHHHHHHHHhcccccccccccccc
Q psy14504 664 LKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 664 l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
-.+++.-+..|+.. ...|.-.||--+
T Consensus 317 ~~LT~~d~~eL~~k--TeGySGsDisiv 342 (439)
T KOG0739|consen 317 HVLTEQDFKELARK--TEGYSGSDISIV 342 (439)
T ss_pred cccchhhHHHHHhh--cCCCCcCceEEE
Confidence 45666667777763 223333455444
No 193
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.7e-14 Score=164.85 Aligned_cols=183 Identities=19% Similarity=0.265 Sum_probs=125.6
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc---------eEEecccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES---------IIRIDMSEFI 510 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~---------~~~~~~~~~~ 510 (951)
..++||+.+++.+..++...+. .+++||+||||||||++|+++|+.+.+.... ..+..|..+.
T Consensus 21 ~dliGq~~vv~~L~~ai~~~ri--------~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~ 92 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDRL--------AGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFN 92 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHh
Confidence 5678999999999998875432 2479999999999999999999999543210 1111111111
Q ss_pred chh--chhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCe
Q psy14504 511 EKH--SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 584 (951)
Q Consensus 511 ~~~--~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 584 (951)
... .+..+ .. ....|.++.+.+.+.+.. +.+.|+||||++.++...++.|++.|++ +...+
T Consensus 93 ~~~h~Dv~ei-da-as~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEe-----------pp~~~ 159 (507)
T PRK06645 93 NHNHPDIIEI-DA-ASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEE-----------PPPHI 159 (507)
T ss_pred cCCCCcEEEe-ec-cCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhh-----------cCCCE
Confidence 110 00011 11 112233333334444432 3468999999999999999999999997 55678
Q ss_pred EEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCcc
Q psy14504 585 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDL 664 (951)
Q Consensus 585 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l 664 (951)
+||++|+... .+.+.+.+|+ ..+.|.+++.+++..++...++ ..+ +
T Consensus 160 vfI~aTte~~------------------------kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~-------~eg--i 205 (507)
T PRK06645 160 IFIFATTEVQ------------------------KIPATIISRC-QRYDLRRLSFEEIFKLLEYITK-------QEN--L 205 (507)
T ss_pred EEEEEeCChH------------------------HhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHH-------HcC--C
Confidence 8888876421 2456788999 6899999999999999665553 345 6
Q ss_pred ccchHHHHHHHHh
Q psy14504 665 KISKAALKKISNI 677 (951)
Q Consensus 665 ~~~~~~~~~L~~~ 677 (951)
.+++++++.|+..
T Consensus 206 ~ie~eAL~~Ia~~ 218 (507)
T PRK06645 206 KTDIEALRIIAYK 218 (507)
T ss_pred CCCHHHHHHHHHH
Confidence 7889999999884
No 194
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.59 E-value=3.7e-14 Score=148.65 Aligned_cols=189 Identities=12% Similarity=0.132 Sum_probs=132.2
Q ss_pred CCCCcc-c-cHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccc
Q psy14504 42 KLDPVI-G-RDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRG 119 (951)
Q Consensus 42 ~l~~lv-G-~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 119 (951)
+|++++ | ....+..+..+......++++|+||||||||+|++++++.+... +..+..++......
T Consensus 20 ~fd~f~~~~n~~a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~-------~~~v~y~~~~~~~~------ 86 (235)
T PRK08084 20 TFASFYPGDNDSLLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQR-------GRAVGYVPLDKRAW------ 86 (235)
T ss_pred CccccccCccHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEEHHHHhh------
Confidence 677777 4 44566666666556666789999999999999999999987532 44555565544321
Q ss_pred cHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHHhhcc
Q psy14504 120 EFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRF 199 (951)
Q Consensus 120 ~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l~~Rf 199 (951)
....+++..... .+|+|||++.+.... .........+...+++++..+|.|++.+. .....+.|.|+|||
T Consensus 87 ----~~~~~~~~~~~~---dlliiDdi~~~~~~~--~~~~~lf~l~n~~~e~g~~~li~ts~~~p-~~l~~~~~~L~SRl 156 (235)
T PRK08084 87 ----FVPEVLEGMEQL---SLVCIDNIECIAGDE--LWEMAIFDLYNRILESGRTRLLITGDRPP-RQLNLGLPDLASRL 156 (235)
T ss_pred ----hhHHHHHHhhhC---CEEEEeChhhhcCCH--HHHHHHHHHHHHHHHcCCCeEEEeCCCCh-HHcCcccHHHHHHH
Confidence 112233333322 289999999885422 11223456667777877766767766554 22233679999999
Q ss_pred ---eEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q psy14504 200 ---QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 263 (951)
Q Consensus 200 ---~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 263 (951)
..+.+.+|+.+++.++++..+.. .++.++++++.+++..+.+.+ +.+..+++..
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~~~a~~----~~~~l~~~v~~~L~~~~~~d~------r~l~~~l~~l 213 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQLRARL----RGFELPEDVGRFLLKRLDREM------RTLFMTLDQL 213 (235)
T ss_pred hCCceeeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhhcCCH------HHHHHHHHHH
Confidence 46999999999999999875553 478999999999999998877 6677666664
No 195
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.59 E-value=1.1e-14 Score=167.72 Aligned_cols=199 Identities=19% Similarity=0.294 Sum_probs=131.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEeccc---cccchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMS---EFIEKHS 514 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~---~~~~~~~ 514 (951)
+.|+||+.+++.|.+++...+. .+++||+||+|||||++|+++|+.++..... ..+..|. .+.....
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~ri--------~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~~g~h 87 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENRV--------APAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVTQGMH 87 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHhcCCC
Confidence 5678999999999999875432 1379999999999999999999999643110 0111111 1111000
Q ss_pred --hhcccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 515 --ISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 515 --~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
+..+-+ ...+|.+..+.+.+.+. .....||||||+|.++...++.|++.||+ ...+++||+
T Consensus 88 pDv~eId~--a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEE-----------P~~~~ifIL 154 (624)
T PRK14959 88 VDVVEIDG--ASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEE-----------PPARVTFVL 154 (624)
T ss_pred CceEEEec--ccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhc-----------cCCCEEEEE
Confidence 001101 11222223333433332 34568999999999999999999999997 446788888
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
+||... .+.+.+.+|| .++.|.+++.+++.+++...+ ...+ +.+++
T Consensus 155 aTt~~~------------------------kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il-------~~eg--i~id~ 200 (624)
T PRK14959 155 ATTEPH------------------------KFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVL-------GREG--VDYDP 200 (624)
T ss_pred ecCChh------------------------hhhHHHHhhh-hccccCCCCHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 888532 2446788999 589999999999998865543 3344 67899
Q ss_pred HHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 669 AALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 669 ~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
++++.|+... -+|+......|++++
T Consensus 201 eal~lIA~~s------~GdlR~Al~lLeqll 225 (624)
T PRK14959 201 AAVRLIARRA------AGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHHHHHHc------CCCHHHHHHHHHHHH
Confidence 9999999843 244444433355443
No 196
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=8.6e-15 Score=169.12 Aligned_cols=200 Identities=17% Similarity=0.235 Sum_probs=131.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc------cccchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS------EFIEKH 513 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~------~~~~~~ 513 (951)
..|+||+++++.|.+++...+ ..+.+||+||+|||||++|+++|+.+++... ....-|. .+....
T Consensus 16 ddIIGQe~vv~~L~~ai~~~r--------l~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~-~~~~pCg~C~sCr~i~~g~ 86 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEGR--------LHHAYLLTGTRGVGKTTIARILAKSLNCENA-QHGEPCGVCQSCTQIDAGR 86 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCcHHHHHHHHHHHhcccCC-CCCCCCcccHHHHHHhccC
Confidence 568999999999999988543 1236899999999999999999999865321 1001111 111100
Q ss_pred chhcccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEe
Q psy14504 514 SISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 589 (951)
Q Consensus 514 ~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 589 (951)
...-+--......|.+..+.+...+. .....|+||||+|.++...++.|++.|++ ...+++||++
T Consensus 87 ~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEE-----------Pp~~v~fILa 155 (709)
T PRK08691 87 YVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVKFILA 155 (709)
T ss_pred ccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHh-----------CCCCcEEEEE
Confidence 00000000011122222222322222 24468999999999999999999999997 4567888888
Q ss_pred cCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchH
Q psy14504 590 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 669 (951)
Q Consensus 590 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 669 (951)
|+... .+.+.+++|| ..+.|.+++.+++...+...+ ...+ +.++++
T Consensus 156 Ttd~~------------------------kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il-------~kEg--i~id~e 201 (709)
T PRK08691 156 TTDPH------------------------KVPVTVLSRC-LQFVLRNMTAQQVADHLAHVL-------DSEK--IAYEPP 201 (709)
T ss_pred eCCcc------------------------ccchHHHHHH-hhhhcCCCCHHHHHHHHHHHH-------HHcC--CCcCHH
Confidence 87533 2456788999 789999999999999855544 4445 678999
Q ss_pred HHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 670 ALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 670 ~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
++..|++.. ...+|++... |++++
T Consensus 202 AL~~Ia~~A---~GslRdAlnL---LDqai 225 (709)
T PRK08691 202 ALQLLGRAA---AGSMRDALSL---LDQAI 225 (709)
T ss_pred HHHHHHHHh---CCCHHHHHHH---HHHHH
Confidence 999999844 2334444444 55544
No 197
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.59 E-value=1.7e-14 Score=168.65 Aligned_cols=186 Identities=23% Similarity=0.377 Sum_probs=129.2
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce---EEeccccccchhch
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI---IRIDMSEFIEKHSI 515 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~---~~~~~~~~~~~~~~ 515 (951)
...|+||+.+++.+..++...+. .+.+||+||+|||||++|+++|+.+++..... .+-.|...... ..
T Consensus 17 f~dIiGQe~~v~~L~~aI~~~rl--------~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~-~~ 87 (725)
T PRK07133 17 FDDIVGQDHIVQTLKNIIKSNKI--------SHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNN-SL 87 (725)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcC-CC
Confidence 35688999999999999975432 23689999999999999999999996543211 11112111110 00
Q ss_pred hcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecC
Q psy14504 516 SRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 591 (951)
Q Consensus 516 ~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 591 (951)
.-+.+...+..|.++.+.+.+.+.. +.+.|++|||+|.++..++++|++.||+ +...++||++|+
T Consensus 88 Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEE-----------PP~~tifILaTt 156 (725)
T PRK07133 88 DIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEE-----------PPKHVIFILATT 156 (725)
T ss_pred cEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhc-----------CCCceEEEEEcC
Confidence 0011111223344444555555543 4568999999999999999999999997 556788888886
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 671 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 671 (951)
... .+.+.+++|| ..+.|.+++.+++.+.+...+ ...+ +.++++++
T Consensus 157 e~~------------------------KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il-------~keg--I~id~eAl 202 (725)
T PRK07133 157 EVH------------------------KIPLTILSRV-QRFNFRRISEDEIVSRLEFIL-------EKEN--ISYEKNAL 202 (725)
T ss_pred Chh------------------------hhhHHHHhhc-eeEEccCCCHHHHHHHHHHHH-------HHcC--CCCCHHHH
Confidence 422 3467899999 599999999999999855544 3345 67888999
Q ss_pred HHHHHhc
Q psy14504 672 KKISNIG 678 (951)
Q Consensus 672 ~~L~~~~ 678 (951)
+.|+...
T Consensus 203 ~~LA~lS 209 (725)
T PRK07133 203 KLIAKLS 209 (725)
T ss_pred HHHHHHc
Confidence 9988743
No 198
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.59 E-value=5.1e-15 Score=166.50 Aligned_cols=201 Identities=22% Similarity=0.309 Sum_probs=146.3
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEeccc---cccchh
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMS---EFIEKH 513 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~---~~~~~~ 513 (951)
...++||+.+.+.|.+++...+.. +.+||.||-|||||++||.+|+.+++...+ -.+..|. ++....
T Consensus 15 F~evvGQe~v~~~L~nal~~~ri~--------hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I~~g~ 86 (515)
T COG2812 15 FDDVVGQEHVVKTLSNALENGRIA--------HAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEINEGS 86 (515)
T ss_pred HHHhcccHHHHHHHHHHHHhCcch--------hhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhhhcCC
Confidence 356799999999999999876532 469999999999999999999999654311 1111221 111110
Q ss_pred chhccc-CCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 514 SISRLI-GAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 514 ~~~~l~-g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
.. .++ -...+..|-++.+.+.+.+.. +.+.|++|||+|.++..++|+||+.+|+ +..+++||+
T Consensus 87 ~~-DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEE-----------PP~hV~FIl 154 (515)
T COG2812 87 LI-DVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEE-----------PPSHVKFIL 154 (515)
T ss_pred cc-cchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhccccc-----------CccCeEEEE
Confidence 00 000 011224455666677776654 3479999999999999999999999998 889999999
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
+|.... ..++..++|| ..+.|..++.+++..-+...+ ...+ +.+++
T Consensus 155 ATTe~~------------------------Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~-------~~E~--I~~e~ 200 (515)
T COG2812 155 ATTEPQ------------------------KIPNTILSRC-QRFDFKRLDLEEIAKHLAAIL-------DKEG--INIEE 200 (515)
T ss_pred ecCCcC------------------------cCchhhhhcc-ccccccCCCHHHHHHHHHHHH-------HhcC--CccCH
Confidence 988644 4678899999 699999999999888855444 4455 88999
Q ss_pred HHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 669 AALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 669 ~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
+++..+++.+ ..++||.-.. |.+++
T Consensus 201 ~aL~~ia~~a---~Gs~RDalsl---LDq~i 225 (515)
T COG2812 201 DALSLIARAA---EGSLRDALSL---LDQAI 225 (515)
T ss_pred HHHHHHHHHc---CCChhhHHHH---HHHHH
Confidence 9999999865 4667776666 44444
No 199
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.58 E-value=2.4e-14 Score=159.44 Aligned_cols=184 Identities=13% Similarity=0.161 Sum_probs=127.9
Q ss_pred CCCCccccHHHHHHHHHHHHcCC----------CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCC--C-----------Cc
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQRRS----------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVP--N-----------SL 98 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~~~~----------~~~iLL~GppGtGKTtla~~la~~l~~~~~~--~-----------~~ 98 (951)
.|++++||+..++.|...+..+. +..+||+||||+|||++|+++|+.+.+.... . ..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 58899999999999999888754 4558999999999999999999998654210 0 00
Q ss_pred CCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--Cc
Q psy14504 99 LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GE 173 (951)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~ 173 (951)
....+..+.... .. -....++.+++.+.. .++..|+||||+|.|.+ ..+|.|+..||. ..
T Consensus 83 ~hpD~~~i~~~~-----~~--i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~--------~aanaLLk~LEep~~~ 147 (394)
T PRK07940 83 THPDVRVVAPEG-----LS--IGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTE--------RAANALLKAVEEPPPR 147 (394)
T ss_pred CCCCEEEecccc-----cc--CCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCH--------HHHHHHHHHhhcCCCC
Confidence 111222232211 11 112246677776652 23456999999999954 566888889976 23
Q ss_pred EEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCc
Q psy14504 174 LHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 253 (951)
Q Consensus 174 i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 253 (951)
.++|.+|+.+. .+.|+++|||..+.|++|+.++...+|.. . ..++++....++.+++++.
T Consensus 148 ~~fIL~a~~~~-----~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~------~~~~~~~a~~la~~s~G~~------ 207 (394)
T PRK07940 148 TVWLLCAPSPE-----DVLPTIRSRCRHVALRTPSVEAVAEVLVR---R------DGVDPETARRAARASQGHI------ 207 (394)
T ss_pred CeEEEEECChH-----HChHHHHhhCeEEECCCCCHHHHHHHHHH---h------cCCCHHHHHHHHHHcCCCH------
Confidence 44455555555 78999999999999999999998877752 1 1256777788888888765
Q ss_pred hhHHHHH
Q psy14504 254 DKAIDLI 260 (951)
Q Consensus 254 ~~a~~ll 260 (951)
..+..++
T Consensus 208 ~~A~~l~ 214 (394)
T PRK07940 208 GRARRLA 214 (394)
T ss_pred HHHHHHh
Confidence 6665554
No 200
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.58 E-value=7.1e-15 Score=166.91 Aligned_cols=162 Identities=22% Similarity=0.346 Sum_probs=109.4
Q ss_pred cCCChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC-------CCceEEec
Q psy14504 441 RVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-------EESIIRID 505 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~-------~~~~~~~~ 505 (951)
.|.|.+..++.+...+... ..++..| ..+||+||||||||++|+++|+.+... ...|+.+.
T Consensus 183 dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p----~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~ 258 (512)
T TIGR03689 183 DIGGLDSQIEQIRDAVELPFLHPELYREYDLKPP----KGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIK 258 (512)
T ss_pred HcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCC----cceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEecc
Confidence 3557777777777776431 2233332 369999999999999999999998322 11233333
Q ss_pred cccccchhchhcccCCCCCCcccccc--chhHHHHHh----CCCeEEEEccccccCH------------HHHHHHHHHhh
Q psy14504 506 MSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRR----KPYSLILLDEIEKANS------------DVFNILLQILD 567 (951)
Q Consensus 506 ~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~----~~~~vl~iDEid~~~~------------~~~~~Ll~~le 567 (951)
.+++.. .|+|..+. +.++..++. ..++||||||+|.+.. .+.+.|+..|+
T Consensus 259 ~~eLl~------------kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LD 326 (512)
T TIGR03689 259 GPELLN------------KYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELD 326 (512)
T ss_pred chhhcc------------cccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhc
Confidence 333322 15555443 334444433 3579999999997632 34577888887
Q ss_pred cceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHH
Q psy14504 568 DGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSI 645 (951)
Q Consensus 568 ~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i 645 (951)
.- ....++++|+|||... .++|+++. |||..|.|++++.++..+|
T Consensus 327 gl---------~~~~~ViVI~ATN~~d------------------------~LDpALlRpGRfD~~I~~~~Pd~e~r~~I 373 (512)
T TIGR03689 327 GV---------ESLDNVIVIGASNRED------------------------MIDPAILRPGRLDVKIRIERPDAEAAADI 373 (512)
T ss_pred cc---------ccCCceEEEeccCChh------------------------hCCHhhcCccccceEEEeCCCCHHHHHHH
Confidence 41 1235788999999633 35788886 9999999999999999999
Q ss_pred HHHHHH
Q psy14504 646 ANIQLN 651 (951)
Q Consensus 646 ~~~~l~ 651 (951)
+..++.
T Consensus 374 l~~~l~ 379 (512)
T TIGR03689 374 FSKYLT 379 (512)
T ss_pred HHHHhh
Confidence 877764
No 201
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=1.4e-14 Score=170.21 Aligned_cols=203 Identities=22% Similarity=0.287 Sum_probs=136.0
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc-----eEEeccccccchh
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES-----IIRIDMSEFIEKH 513 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~-----~~~~~~~~~~~~~ 513 (951)
.+.++||+++++.+.+.+...+. .+.+||+||+|||||++|+++|+.+++.... -.+..|.++....
T Consensus 15 f~~iiGq~~v~~~L~~~i~~~~~--------~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i~~g~ 86 (576)
T PRK14965 15 FSDLTGQEHVSRTLQNAIDTGRV--------AHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEITEGR 86 (576)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHHhcCC
Confidence 36789999999999999875432 2368999999999999999999999653210 0111122211111
Q ss_pred chhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEe
Q psy14504 514 SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 589 (951)
Q Consensus 514 ~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 589 (951)
+..-+.-...+.+|.++.+.+.+.+.. +.+.|+||||+|.++...+|.|++.||+ +..+++||++
T Consensus 87 ~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEe-----------pp~~~~fIl~ 155 (576)
T PRK14965 87 SVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEE-----------PPPHVKFIFA 155 (576)
T ss_pred CCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHc-----------CCCCeEEEEE
Confidence 111000011112333344445454443 3468999999999999999999999997 5678889988
Q ss_pred cCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchH
Q psy14504 590 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 669 (951)
Q Consensus 590 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 669 (951)
|+... .+.+.+.+|| ..+.|.+++.+++...+...+ ...+ +.++++
T Consensus 156 t~~~~------------------------kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~-------~~eg--i~i~~~ 201 (576)
T PRK14965 156 TTEPH------------------------KVPITILSRC-QRFDFRRIPLQKIVDRLRYIA-------DQEG--ISISDA 201 (576)
T ss_pred eCChh------------------------hhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHH-------HHhC--CCCCHH
Confidence 87532 3457899999 699999999999988855444 3345 778999
Q ss_pred HHHHHHHhcccccccccccccchHHHHHHHH
Q psy14504 670 ALKKISNIGFDLIYGARDVHGCKKSLSILLK 700 (951)
Q Consensus 670 ~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~ 700 (951)
++..|+...- .++|+.... |++++.
T Consensus 202 al~~la~~a~---G~lr~al~~---Ldqlia 226 (576)
T PRK14965 202 ALALVARKGD---GSMRDSLST---LDQVLA 226 (576)
T ss_pred HHHHHHHHcC---CCHHHHHHH---HHHHHH
Confidence 9999988542 233444333 655553
No 202
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.58 E-value=3.5e-14 Score=166.08 Aligned_cols=185 Identities=19% Similarity=0.305 Sum_probs=127.6
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEe---ccccccchh
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRI---DMSEFIEKH 513 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~~~---~~~~~~~~~ 513 (951)
.+.++||+++++.+.+++...+. .+.+||+||+|||||++|+.+|+.+++.... ..+. +|..+....
T Consensus 15 f~~viGq~~v~~~L~~~i~~~~~--------~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i~~g~ 86 (559)
T PRK05563 15 FEDVVGQEHITKTLKNAIKQGKI--------SHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAITNGS 86 (559)
T ss_pred HHhccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHHhcCC
Confidence 46789999999999999985432 2468999999999999999999998643211 0000 111111110
Q ss_pred chh-cccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 514 SIS-RLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 514 ~~~-~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
... ..+. ..+..|.++.+.+.+.+. .+.+.|+||||+|.++...+|.|++.|++ +..+++||+
T Consensus 87 ~~dv~eid-aas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEe-----------pp~~~ifIl 154 (559)
T PRK05563 87 LMDVIEID-AASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEE-----------PPAHVIFIL 154 (559)
T ss_pred CCCeEEee-ccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcC-----------CCCCeEEEE
Confidence 000 0000 011233333444555544 34478999999999999999999999997 556788888
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
+|+... .+.+.+.+|+ ..+.|.+++.+++...+...+ ...+ +.+++
T Consensus 155 att~~~------------------------ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~-------~~eg--i~i~~ 200 (559)
T PRK05563 155 ATTEPH------------------------KIPATILSRC-QRFDFKRISVEDIVERLKYIL-------DKEG--IEYED 200 (559)
T ss_pred EeCChh------------------------hCcHHHHhHh-eEEecCCCCHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 887422 3567899999 589999999999998855544 3445 67889
Q ss_pred HHHHHHHHh
Q psy14504 669 AALKKISNI 677 (951)
Q Consensus 669 ~~~~~L~~~ 677 (951)
++++.|+..
T Consensus 201 ~al~~ia~~ 209 (559)
T PRK05563 201 EALRLIARA 209 (559)
T ss_pred HHHHHHHHH
Confidence 999999884
No 203
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.58 E-value=5.1e-14 Score=154.92 Aligned_cols=179 Identities=17% Similarity=0.311 Sum_probs=125.5
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.++||++.++.+..++...... ..+..+++|+||||||||++|+++|+.+ +..+.....+.....
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~----~~~~~~~ll~Gp~G~GKT~la~~ia~~~---~~~~~~~~~~~~~~~------- 69 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMR----QEALDHLLLYGPPGLGKTTLAHIIANEM---GVNLKITSGPALEKP------- 69 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCCHHHHHHHHHHHh---CCCEEEeccchhcCc-------
Confidence 46889999999999988654322 1223479999999999999999999988 334443333221110
Q ss_pred CCCCCCccccccchhHHHH-HhCCCeEEEEccccccCHHHHHHHHHHhhcceeec--CCC-----eEeecCCeEEEEecC
Q psy14504 520 GAPPGYIGYEEGGYLTEIV-RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD--NRG-----RTINFRNTIIVMTSN 591 (951)
Q Consensus 520 g~~~~~~g~~~~~~l~~~~-~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~--~~g-----~~~~~~~~iiI~ttn 591 (951)
..+...+ ....+.+|||||++.+++..++.|+.+|++..... ..+ ........++|.+||
T Consensus 70 ------------~~l~~~l~~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~ 137 (305)
T TIGR00635 70 ------------GDLAAILTNLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATT 137 (305)
T ss_pred ------------hhHHHHHHhcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecC
Confidence 1122222 22346799999999999999999999998754321 111 122344567777777
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 671 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 671 (951)
... .+.+++.+||..++.|.+++.+++.+++...... .+ +.++++++
T Consensus 138 ~~~------------------------~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~-------~~--~~~~~~al 184 (305)
T TIGR00635 138 RAG------------------------MLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGL-------LN--VEIEPEAA 184 (305)
T ss_pred Ccc------------------------ccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHH-------hC--CCcCHHHH
Confidence 642 3567899999888999999999999997655432 23 67899999
Q ss_pred HHHHHh
Q psy14504 672 KKISNI 677 (951)
Q Consensus 672 ~~L~~~ 677 (951)
++|++.
T Consensus 185 ~~ia~~ 190 (305)
T TIGR00635 185 LEIARR 190 (305)
T ss_pred HHHHHH
Confidence 999885
No 204
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.58 E-value=2.9e-14 Score=166.07 Aligned_cols=225 Identities=12% Similarity=0.066 Sum_probs=146.7
Q ss_pred hcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCC----C-cEEEcCCCCcHHHHHHHHHHHHHcCCCC-CCcCCCeEE
Q psy14504 31 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKN----N-PVLIGEPGVGKTAIVEGLAQRIINGEVP-NSLLSKKIL 104 (951)
Q Consensus 31 ~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~----~-iLL~GppGtGKTtla~~la~~l~~~~~~-~~~~~~~~~ 104 (951)
..+|++||||.++++++|+++.++.+..++...... . ++|+|||||||||+++.+|+.+...... ....++...
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~ 150 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQ 150 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccc
Confidence 357999999999999999999999998887753322 2 8999999999999999999987321000 000000000
Q ss_pred EEe---hhhhhcCccccccHHHHHHHHHHHHHh---------cCCCeEEEEecccccccCCCCCCchhHHhhhh-hhccC
Q psy14504 105 LLD---IALLLAGTKYRGEFEDRLKKILKEISN---------NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLK-PELSR 171 (951)
Q Consensus 105 ~~~---~~~l~~~~~~~g~~~~~l~~~~~~a~~---------~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~-~~le~ 171 (951)
.-. ...+.............++.++..+.. .....||||||++.++... ....++.|+ .+.+.
T Consensus 151 ~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~----~~~lq~lLr~~~~e~ 226 (637)
T TIGR00602 151 KNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD----TRALHEILRWKYVSI 226 (637)
T ss_pred ccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh----HHHHHHHHHHHhhcC
Confidence 000 000000000011222345555655542 2346799999999876432 234555666 56778
Q ss_pred CcEEEEEeecchHH------HHhhh----cCHHHhh--cceEEEeeCCCHHHHHHHHHHHHHhhhhh--cCCCC-ChHHH
Q psy14504 172 GELHCIGATTLNEY------RQYIE----KDAAFER--RFQKILVEEPDIEETISILRGLQKKYEVH--HGVEI-TDPAI 236 (951)
Q Consensus 172 ~~i~vI~at~~~~~------~~~~~----~~~~l~~--Rf~~i~~~~p~~~er~~il~~~~~~~~~~--~~~~i-~~~~l 236 (951)
+.+.+|+++|.... ...+. +.+++++ |+..|.|.+.+..+....|+.++...... ....+ +++++
T Consensus 227 ~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~~~p~~~~l 306 (637)
T TIGR00602 227 GRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKIKVPKKTSV 306 (637)
T ss_pred CCceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhccccccccCCHHHH
Confidence 88888888885332 11122 5578887 66679999999999999998888753221 12223 56889
Q ss_pred HHHHHHhhhhcccCCCchhHHHHHHHHHH
Q psy14504 237 VAASELSYRYISDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 237 ~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 265 (951)
..++..+.|.+ +.|+..|+.+|.
T Consensus 307 ~~I~~~s~GDi------RsAIn~LQf~~~ 329 (637)
T TIGR00602 307 ELLCQGCSGDI------RSAINSLQFSSS 329 (637)
T ss_pred HHHHHhCCChH------HHHHHHHHHHHh
Confidence 99999999998 999999998774
No 205
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.58 E-value=2.9e-14 Score=163.87 Aligned_cols=200 Identities=22% Similarity=0.262 Sum_probs=132.2
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc-eEEe---ccccccchhch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES-IIRI---DMSEFIEKHSI 515 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~-~~~~---~~~~~~~~~~~ 515 (951)
+.|+||+++++.+..++...+. .+.+||+||||||||++|+++|+.++..+.. ..+. .|..+......
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~~l--------~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~ 85 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQGRL--------GHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHP 85 (504)
T ss_pred HHhcChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCC
Confidence 5689999999999999885432 2356999999999999999999998643211 0111 11111110000
Q ss_pred h-cccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEec
Q psy14504 516 S-RLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 590 (951)
Q Consensus 516 ~-~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 590 (951)
. ..++. .+..+.+..+.+.+.+.. ..+.|+||||+|.++...++.|++.|++ +..++++|+++
T Consensus 86 dv~el~~-~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEe-----------p~~~t~~Il~t 153 (504)
T PRK14963 86 DVLEIDA-ASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEE-----------PPEHVIFILAT 153 (504)
T ss_pred ceEEecc-cccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHh-----------CCCCEEEEEEc
Confidence 0 00111 112222222334333332 3468999999999999999999999997 44577888888
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 670 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 670 (951)
+... .+.+.+.+|+ ..+.|.+++.+++...+...+ ...+ +.+++++
T Consensus 154 ~~~~------------------------kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~-------~~eg--i~i~~~A 199 (504)
T PRK14963 154 TEPE------------------------KMPPTILSRT-QHFRFRRLTEEEIAGKLRRLL-------EAEG--REAEPEA 199 (504)
T ss_pred CChh------------------------hCChHHhcce-EEEEecCCCHHHHHHHHHHHH-------HHcC--CCCCHHH
Confidence 7422 3567788999 599999999999999955544 4456 6679999
Q ss_pred HHHHHHhcccccccccccccchHHHHHHH
Q psy14504 671 LKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 671 ~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
+++|+... -||+......|++++
T Consensus 200 l~~ia~~s------~GdlR~aln~Lekl~ 222 (504)
T PRK14963 200 LQLVARLA------DGAMRDAESLLERLL 222 (504)
T ss_pred HHHHHHHc------CCCHHHHHHHHHHHH
Confidence 99998843 245544444466654
No 206
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.57 E-value=3.2e-14 Score=162.52 Aligned_cols=201 Identities=17% Similarity=0.273 Sum_probs=132.2
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc-----eEEeccccccchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES-----IIRIDMSEFIEKHS 514 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~-----~~~~~~~~~~~~~~ 514 (951)
+.++||+.+++.+...+...+. .+.+||+||+|+|||++|+++|+.+++.... ..+-.|..+.....
T Consensus 14 deiiGqe~v~~~L~~~I~~grl--------~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h 85 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNNRL--------AHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRH 85 (535)
T ss_pred HHccCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCC
Confidence 5689999999999999875432 2357999999999999999999998643211 01111111111100
Q ss_pred hhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEec
Q psy14504 515 ISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 590 (951)
Q Consensus 515 ~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 590 (951)
..-+-+......|.+..+.+...... +.+.|++|||+|.+++..+++|++.||+ +..+++||++|
T Consensus 86 ~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEE-----------pp~~t~FIL~t 154 (535)
T PRK08451 86 IDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEE-----------PPSYVKFILAT 154 (535)
T ss_pred CeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhh-----------cCCceEEEEEE
Confidence 00010111111222222222222221 3468999999999999999999999997 56678888888
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 670 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 670 (951)
+... .+.+.+.+|+ ..+.|.+++.+++.+.+...+ ...| +.+++++
T Consensus 155 td~~------------------------kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il-------~~EG--i~i~~~A 200 (535)
T PRK08451 155 TDPL------------------------KLPATILSRT-QHFRFKQIPQNSIISHLKTIL-------EKEG--VSYEPEA 200 (535)
T ss_pred CChh------------------------hCchHHHhhc-eeEEcCCCCHHHHHHHHHHHH-------HHcC--CCCCHHH
Confidence 7532 3567899998 699999999999998855444 3445 6789999
Q ss_pred HHHHHHhcccccccccccccchHHHHHHH
Q psy14504 671 LKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 671 ~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
++.|+..+ -||+......+++++
T Consensus 201 l~~Ia~~s------~GdlR~alnlLdqai 223 (535)
T PRK08451 201 LEILARSG------NGSLRDTLTLLDQAI 223 (535)
T ss_pred HHHHHHHc------CCcHHHHHHHHHHHH
Confidence 99999843 245555444465555
No 207
>KOG0731|consensus
Probab=99.57 E-value=1.3e-14 Score=167.49 Aligned_cols=164 Identities=26% Similarity=0.395 Sum_probs=126.2
Q ss_pred hccCCChHHHHHHHHHHHHhhh-------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~-------~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
.++|.|.++|+..|.+.+...+ .|.+-|+ .+||+||||||||.||||+|.+. +.||+.+..++|.+
T Consensus 310 FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPk----GvLL~GPPGTGKTLLAKAiAGEA---gVPF~svSGSEFvE 382 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPK----GVLLVGPPGTGKTLLAKAIAGEA---GVPFFSVSGSEFVE 382 (774)
T ss_pred cccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcC----ceEEECCCCCcHHHHHHHHhccc---CCceeeechHHHHH
Confidence 4678899999999998885543 3433343 59999999999999999999888 89999999999987
Q ss_pred hhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCH---------------HHHHHHHHHhhcceeecCCC
Q psy14504 512 KHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANS---------------DVFNILLQILDDGRLTDNRG 576 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~---------------~~~~~Ll~~le~g~~~~~~g 576 (951)
. +.| +|.+..+.++..++...+||+||||||.... ..+|+||..||. ..
T Consensus 383 ~-----~~g-----~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDg-f~----- 446 (774)
T KOG0731|consen 383 M-----FVG-----VGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDG-FE----- 446 (774)
T ss_pred H-----hcc-----cchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcC-Cc-----
Confidence 4 111 2333447788888888999999999986542 457888888874 21
Q ss_pred eEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 577 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 577 ~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
...+++++++||.+.. +.++|+ +|||..|....++.....+|++.++..
T Consensus 447 ---~~~~vi~~a~tnr~d~------------------------ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~ 497 (774)
T KOG0731|consen 447 ---TSKGVIVLAATNRPDI------------------------LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRK 497 (774)
T ss_pred ---CCCcEEEEeccCCccc------------------------cCHHhcCCCccccceeccCCchhhhHHHHHHHhhc
Confidence 2256889999997432 345555 799999999999999999997766654
No 208
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.57 E-value=5.5e-14 Score=156.30 Aligned_cols=179 Identities=18% Similarity=0.217 Sum_probs=126.0
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 429 EKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 429 ~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
..+..+...+.+.++|++++++.+..++.... ++||.||||||||++|++||..+...+ +|....+.-
T Consensus 9 ~~i~~l~~~l~~~i~gre~vI~lll~aalag~-----------hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~f 76 (498)
T PRK13531 9 ERISRLSSALEKGLYERSHAIRLCLLAALSGE-----------SVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRF 76 (498)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHccCC-----------CEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeee
Confidence 45677889999999999999999998886332 799999999999999999999875433 444444321
Q ss_pred ccchhchhcccCCCCCCccccccchhHH----HHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCe
Q psy14504 509 FIEKHSISRLIGAPPGYIGYEEGGYLTE----IVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 584 (951)
Q Consensus 509 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~----~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 584 (951)
.. ...++|...-+.....+ .+.. .+.. ..+||+|||.++++..|+.||+.|+++.++. .|.+......
T Consensus 77 tt----p~DLfG~l~i~~~~~~g-~f~r~~~G~L~~--A~lLfLDEI~rasp~~QsaLLeam~Er~~t~-g~~~~~lp~r 148 (498)
T PRK13531 77 ST----PEEVFGPLSIQALKDEG-RYQRLTSGYLPE--AEIVFLDEIWKAGPAILNTLLTAINERRFRN-GAHEEKIPMR 148 (498)
T ss_pred cC----cHHhcCcHHHhhhhhcC-chhhhcCCcccc--ccEEeecccccCCHHHHHHHHHHHHhCeEec-CCeEEeCCCc
Confidence 11 12455542111111111 1111 1111 2399999999999999999999999999886 5677777777
Q ss_pred EEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCC-hhhHHHHHHH
Q psy14504 585 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN-RKNILSIANI 648 (951)
Q Consensus 585 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~-~~~~~~i~~~ 648 (951)
+|++|||.-++ .+.|.+++++||-..+.+++++ .++..+++..
T Consensus 149 fiv~ATN~LPE---------------------~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 149 LLVTASNELPE---------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EEEEECCCCcc---------------------cCCchHHhHhhEEEEEECCCCCchHHHHHHHHc
Confidence 77888874222 2457789999996689999997 4666777654
No 209
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.56 E-value=4.4e-14 Score=159.03 Aligned_cols=163 Identities=28% Similarity=0.407 Sum_probs=117.1
Q ss_pred hccCCChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 510 (951)
...+.|.+..++.+...+... ..|...| .++||+||||||||++|+++|+.+ +.+++.++++++.
T Consensus 130 ~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p----~gvLL~GppGtGKT~lAkaia~~~---~~~~i~v~~~~l~ 202 (389)
T PRK03992 130 YEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPP----KGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELV 202 (389)
T ss_pred HHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCC----CceEEECCCCCChHHHHHHHHHHh---CCCEEEeehHHHh
Confidence 456889999999998877432 1222222 369999999999999999999998 6688888887765
Q ss_pred chhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHhhcceeecCCCe
Q psy14504 511 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGR 577 (951)
Q Consensus 511 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~ 577 (951)
.. |+|..+. +.++..++...++||||||+|.+ ++.++..|++++..-.-.
T Consensus 203 ~~------------~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~----- 265 (389)
T PRK03992 203 QK------------FIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGF----- 265 (389)
T ss_pred Hh------------hccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhcccc-----
Confidence 42 4444332 34555666677899999999987 356667777766531100
Q ss_pred EeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHH
Q psy14504 578 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 578 ~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
....+++||+|||... .+.+.++ +|||..|.|++++.++..+|++..+
T Consensus 266 -~~~~~v~VI~aTn~~~------------------------~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~ 315 (389)
T PRK03992 266 -DPRGNVKIIAATNRID------------------------ILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHT 315 (389)
T ss_pred -CCCCCEEEEEecCChh------------------------hCCHHHcCCccCceEEEECCCCHHHHHHHHHHHh
Confidence 1224678999999642 2456666 4999999999999999999976544
No 210
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=3.4e-14 Score=162.90 Aligned_cols=184 Identities=21% Similarity=0.312 Sum_probs=126.1
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce--EEeccccc---cchh-
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDMSEF---IEKH- 513 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~~~~---~~~~- 513 (951)
..++||+.+++.+..++...+. .+++||+||+|||||++|+++|+.+.+....- .+..|... ....
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~rl--------~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h 87 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNKL--------THAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQS 87 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCC
Confidence 5688999999999998865432 23699999999999999999999996432111 11112110 0000
Q ss_pred -chhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 514 -SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 514 -~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
....+ ...+.+|.++.+.+...+.. ++..|++|||+|.++.+.++.|++.|++ +...+++|+
T Consensus 88 ~DiieI--daas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEE-----------Pp~~tvfIL 154 (605)
T PRK05896 88 VDIVEL--DAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEE-----------PPKHVVFIF 154 (605)
T ss_pred CceEEe--ccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHh-----------CCCcEEEEE
Confidence 00001 01112333333444443333 3468999999999999999999999997 556788888
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
+|+.. ..+.+.+.+|| .++.|.+++.+++...+...+ ...+ +.+++
T Consensus 155 ~Tt~~------------------------~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il-------~keg--i~Is~ 200 (605)
T PRK05896 155 ATTEF------------------------QKIPLTIISRC-QRYNFKKLNNSELQELLKSIA-------KKEK--IKIED 200 (605)
T ss_pred ECCCh------------------------HhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 88742 23567899999 599999999999999855544 3345 67889
Q ss_pred HHHHHHHHhc
Q psy14504 669 AALKKISNIG 678 (951)
Q Consensus 669 ~~~~~L~~~~ 678 (951)
++++.++..+
T Consensus 201 eal~~La~lS 210 (605)
T PRK05896 201 NAIDKIADLA 210 (605)
T ss_pred HHHHHHHHHc
Confidence 9999998843
No 211
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.56 E-value=2.9e-14 Score=165.62 Aligned_cols=184 Identities=17% Similarity=0.272 Sum_probs=124.5
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc------ccchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE------FIEKH 513 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~------~~~~~ 513 (951)
+.++||+++++.+.+++...+. .+.+||+||||||||++|+++|+.+++... ...-.|.. +....
T Consensus 16 ~divGq~~v~~~L~~~i~~~~~--------~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-~~~~pcg~C~~C~~i~~~~ 86 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQRL--------HHAYLFTGTRGVGKTTLARILAKSLNCETG-VTATPCGVCSACLEIDSGR 86 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------CEEEEEECCCCCCHHHHHHHHHHHhcCCCC-CCCCCCCCCHHHHHHhcCC
Confidence 5688999999999999875442 235799999999999999999999965321 00001111 10000
Q ss_pred chhcccC-CCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 514 SISRLIG-APPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 514 ~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
.. .++. ...+.++.+..+.+.+.+.. ..+.|+||||+|+++...+|.|++.|++ +..+++||+
T Consensus 87 ~~-d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEe-----------pp~~~~fIL 154 (527)
T PRK14969 87 FV-DLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEE-----------PPEHVKFIL 154 (527)
T ss_pred CC-ceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhC-----------CCCCEEEEE
Confidence 00 0000 00112222222333333332 3468999999999999999999999997 556788888
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
+|+... .+.+.+++|| ..+.|.+++.+++.+.+...+ ...+ +.+++
T Consensus 155 ~t~d~~------------------------kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il-------~~eg--i~~~~ 200 (527)
T PRK14969 155 ATTDPQ------------------------KIPVTVLSRC-LQFNLKQMPPPLIVSHLQHIL-------EQEN--IPFDA 200 (527)
T ss_pred EeCChh------------------------hCchhHHHHH-HHHhcCCCCHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 886532 2456789999 799999999999998855444 3345 67899
Q ss_pred HHHHHHHHhc
Q psy14504 669 AALKKISNIG 678 (951)
Q Consensus 669 ~~~~~L~~~~ 678 (951)
++++.|+...
T Consensus 201 ~al~~la~~s 210 (527)
T PRK14969 201 TALQLLARAA 210 (527)
T ss_pred HHHHHHHHHc
Confidence 9999998843
No 212
>KOG0726|consensus
Probab=99.56 E-value=9.1e-15 Score=146.77 Aligned_cols=159 Identities=23% Similarity=0.381 Sum_probs=122.2
Q ss_pred ccCCChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
..+-|.+..++.|.+.+... ..|.++|+ .++|||+||||||.||+++|+.. ...|.++-.+++..
T Consensus 185 ~diGGle~QiQEiKEsvELPLthPE~YeemGikpPK----GVIlyG~PGTGKTLLAKAVANqT---SATFlRvvGseLiQ 257 (440)
T KOG0726|consen 185 ADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPK----GVILYGEPGTGKTLLAKAVANQT---SATFLRVVGSELIQ 257 (440)
T ss_pred cccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCC----eeEEeCCCCCchhHHHHHHhccc---chhhhhhhhHHHHH
Confidence 46778888898888887432 34554444 59999999999999999999877 66888888888876
Q ss_pred hhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeE
Q psy14504 512 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 578 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 578 (951)
+ |.|.... +++|..+....++|+||||||.+. .++|..+|.+|..-.-.|.
T Consensus 258 k------------ylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFds---- 321 (440)
T KOG0726|consen 258 K------------YLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDS---- 321 (440)
T ss_pred H------------HhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccc----
Confidence 5 5665544 778888888889999999999765 4788888888874211222
Q ss_pred eecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHH
Q psy14504 579 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIAN 647 (951)
Q Consensus 579 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~ 647 (951)
..++-+||+||.- ..+.|.|+ +|||..|.|+.++....++|+.
T Consensus 322 --rgDvKvimATnri------------------------e~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~ 366 (440)
T KOG0726|consen 322 --RGDVKVIMATNRI------------------------ETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQ 366 (440)
T ss_pred --cCCeEEEEecccc------------------------cccCHhhcCCCccccccccCCCchhhhceeEE
Confidence 2467799999962 23567776 7999999999999998888854
No 213
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.56 E-value=4e-14 Score=165.29 Aligned_cols=187 Identities=18% Similarity=0.265 Sum_probs=128.9
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce-------EE---ecccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI-------IR---IDMSE 508 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~-------~~---~~~~~ 508 (951)
.+.++||+.+++.+.+++...+. .+++||+||+|||||++|+++|+.+++..... .+ -.|..
T Consensus 23 f~dliGq~~~v~~L~~~~~~gri--------~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~ 94 (598)
T PRK09111 23 FDDLIGQEAMVRTLTNAFETGRI--------AQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQA 94 (598)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHH
Confidence 35789999999999999975442 23699999999999999999999996432110 00 01111
Q ss_pred ccchhchhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCe
Q psy14504 509 FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 584 (951)
Q Consensus 509 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 584 (951)
+.......-+.-.+.+.+|.++.+.+.+.++. +.+.|+||||+|.++...+|.|++.|++ +..++
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEe-----------Pp~~~ 163 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPPHV 163 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHh-----------CCCCe
Confidence 11111110000111223444444455555543 3478999999999999999999999997 55678
Q ss_pred EEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCcc
Q psy14504 585 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDL 664 (951)
Q Consensus 585 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l 664 (951)
+||++|+... .+.+.+.+|| ..+.|.+++.+++.+.+...+ ...+ +
T Consensus 164 ~fIl~tte~~------------------------kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~-------~keg--i 209 (598)
T PRK09111 164 KFIFATTEIR------------------------KVPVTVLSRC-QRFDLRRIEADVLAAHLSRIA-------AKEG--V 209 (598)
T ss_pred EEEEEeCChh------------------------hhhHHHHhhe-eEEEecCCCHHHHHHHHHHHH-------HHcC--C
Confidence 8888886422 2446788999 699999999999999855544 3445 6
Q ss_pred ccchHHHHHHHHhc
Q psy14504 665 KISKAALKKISNIG 678 (951)
Q Consensus 665 ~~~~~~~~~L~~~~ 678 (951)
.+++++++.|+...
T Consensus 210 ~i~~eAl~lIa~~a 223 (598)
T PRK09111 210 EVEDEALALIARAA 223 (598)
T ss_pred CCCHHHHHHHHHHc
Confidence 78899999998843
No 214
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.55 E-value=6.2e-14 Score=156.62 Aligned_cols=164 Identities=26% Similarity=0.427 Sum_probs=114.0
Q ss_pred hccCCChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 510 (951)
...|.|.+..++.+...+... ..|+. |..++||+||||||||++|+++|+.+ +.+++.+.++++.
T Consensus 144 ~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~----~pkgvLL~GppGTGKT~LAkalA~~l---~~~fi~i~~s~l~ 216 (398)
T PTZ00454 144 YSDIGGLDIQKQEIREAVELPLTCPELYEQIGID----PPRGVLLYGPPGTGKTMLAKAVAHHT---TATFIRVVGSEFV 216 (398)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCC----CCceEEEECCCCCCHHHHHHHHHHhc---CCCEEEEehHHHH
Confidence 356889999999998887532 12332 22369999999999999999999988 6678888776654
Q ss_pred chhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCe
Q psy14504 511 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGR 577 (951)
Q Consensus 511 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~ 577 (951)
.. |+|.... +.++..++...++||||||+|.+. ..++..+.+++..-. |.
T Consensus 217 ~k------------~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld-----~~ 279 (398)
T PTZ00454 217 QK------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMD-----GF 279 (398)
T ss_pred HH------------hcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhh-----cc
Confidence 32 4444332 445566677788999999999763 234444544443210 00
Q ss_pred EeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHH
Q psy14504 578 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLN 651 (951)
Q Consensus 578 ~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~ 651 (951)
....++++|+|||... .++|.++. |||..|.|++++.++...|++..+.
T Consensus 280 -~~~~~v~VI~aTN~~d------------------------~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~ 330 (398)
T PTZ00454 280 -DQTTNVKVIMATNRAD------------------------TLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITS 330 (398)
T ss_pred -CCCCCEEEEEecCCch------------------------hCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHh
Confidence 0124678999999643 24666664 9999999999999999999765543
No 215
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.55 E-value=6.2e-14 Score=158.26 Aligned_cols=199 Identities=21% Similarity=0.267 Sum_probs=143.6
Q ss_pred CccccHHHHHHHHHHHHc-----CCC-CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-----
Q psy14504 45 PVIGRDDEIRRAIQVLQR-----RSK-NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA----- 113 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~-----~~~-~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~----- 113 (951)
+-.|.+++.++++++|.- ..+ +=++|+||||||||+|++++|+.+ +..++.+.++.+..
T Consensus 324 dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al----------~RkfvR~sLGGvrDEAEIR 393 (782)
T COG0466 324 DHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKAL----------GRKFVRISLGGVRDEAEIR 393 (782)
T ss_pred cccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHh----------CCCEEEEecCccccHHHhc
Confidence 678999999999987762 222 235788999999999999999999 88999998865532
Q ss_pred C--ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc-----------------CCcE
Q psy14504 114 G--TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-----------------RGEL 174 (951)
Q Consensus 114 ~--~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le-----------------~~~i 174 (951)
| -.|+|....++-.-+..+...+ | |++|||||.|..+-. .+-..+|++.|. -.+|
T Consensus 394 GHRRTYIGamPGrIiQ~mkka~~~N-P-v~LLDEIDKm~ss~r----GDPaSALLEVLDPEQN~~F~DhYLev~yDLS~V 467 (782)
T COG0466 394 GHRRTYIGAMPGKIIQGMKKAGVKN-P-VFLLDEIDKMGSSFR----GDPASALLEVLDPEQNNTFSDHYLEVPYDLSKV 467 (782)
T ss_pred cccccccccCChHHHHHHHHhCCcC-C-eEEeechhhccCCCC----CChHHHHHhhcCHhhcCchhhccccCccchhhe
Confidence 1 1367877777777777776333 5 899999999976432 233345666662 1368
Q ss_pred EEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHH-HHhhhhhc-----CCCCChHHHHHHHHHhhhhcc
Q psy14504 175 HCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL-QKKYEVHH-----GVEITDPAIVAASELSYRYIS 248 (951)
Q Consensus 175 ~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~-~~~~~~~~-----~~~i~~~~l~~~~~~s~~~~~ 248 (951)
.+|+|+|..+ .++.+|+.|+..|++.-++.+|..+|.+.. +.+.-..+ .+.++++++..+++.-.|-..
T Consensus 468 mFiaTANsl~-----tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAG 542 (782)
T COG0466 468 MFIATANSLD-----TIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAG 542 (782)
T ss_pred EEEeecCccc-----cCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhh
Confidence 9999999887 799999999999999999999999999644 33222222 367899999988876555443
Q ss_pred cCCCchhHHHHHHHHH
Q psy14504 249 DRFMPDKAIDLIDEAA 264 (951)
Q Consensus 249 ~~~~p~~a~~ll~~a~ 264 (951)
-|.+-+.+..+++.++
T Consensus 543 VR~LeR~i~ki~RK~~ 558 (782)
T COG0466 543 VRNLEREIAKICRKAA 558 (782)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 3334344444444433
No 216
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=99.55 E-value=1.8e-14 Score=161.89 Aligned_cols=218 Identities=17% Similarity=0.248 Sum_probs=167.2
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCC
Q psy14504 444 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP 523 (951)
Q Consensus 444 Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 523 (951)
+++...+.+...+.+.... ..++++.|.|||||-.+|+++++..- ...+|+.++|..+.+....+++||..+
T Consensus 317 ~~d~s~a~l~rk~~rv~~~-------~~pvll~GEtGtGKe~laraiH~~s~-~~gpfvAvNCaAip~~liesELFGy~~ 388 (606)
T COG3284 317 LLDPSRATLLRKAERVAAT-------DLPVLLQGETGTGKEVLARAIHQNSE-AAGPFVAVNCAAIPEALIESELFGYVA 388 (606)
T ss_pred ccCHHHHHHHHHHHHHhhc-------CCCeEecCCcchhHHHHHHHHHhccc-ccCCeEEEEeccchHHhhhHHHhccCc
Confidence 4445555555555443311 12699999999999999999999887 678999999999999999999999876
Q ss_pred C-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhcc
Q psy14504 524 G-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 602 (951)
Q Consensus 524 ~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~ 602 (951)
| +.|...++ -...+..+.++.||+|||..++-..|..||++|++|.++.-.|.. -.-++.+|.+|+.+...+.+
T Consensus 389 GafTga~~kG-~~g~~~~A~gGtlFldeIgd~p~~~Qs~LLrVl~e~~v~p~g~~~-~~vdirvi~ath~dl~~lv~--- 463 (606)
T COG3284 389 GAFTGARRKG-YKGKLEQADGGTLFLDEIGDMPLALQSRLLRVLQEGVVTPLGGTR-IKVDIRVIAATHRDLAQLVE--- 463 (606)
T ss_pred cccccchhcc-ccccceecCCCccHHHHhhhchHHHHHHHHHHHhhCceeccCCcc-eeEEEEEEeccCcCHHHHHH---
Confidence 6 33333222 234567888999999999999999999999999999999877766 44567899999987766554
Q ss_pred ccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh-hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhccc
Q psy14504 603 GDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR-KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFD 680 (951)
Q Consensus 603 ~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~-~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~ 680 (951)
.+.|+.+|++|+.. .|.+|||.+ .|....+...+.+.. .-.+.+++++++.|.. |.
T Consensus 464 --------------~g~fredLyyrL~~~~i~lP~lr~R~d~~~~l~~~~~~~~------~~~~~l~~~~~~~l~~--~~ 521 (606)
T COG3284 464 --------------QGRFREDLYYRLNAFVITLPPLRERSDRIPLLDRILKREN------DWRLQLDDDALARLLA--YR 521 (606)
T ss_pred --------------cCCchHHHHHHhcCeeeccCchhcccccHHHHHHHHHHcc------CCCccCCHHHHHHHHh--CC
Confidence 56899999999965 888899865 444455444443321 2448899999999988 89
Q ss_pred ccccccccccchHHHHHHH
Q psy14504 681 LIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 681 ~~~g~~dlhg~~~~l~~~l 699 (951)
|+.++|.+... ++.+.
T Consensus 522 WPGNirel~~v---~~~~~ 537 (606)
T COG3284 522 WPGNIRELDNV---IERLA 537 (606)
T ss_pred CCCcHHHHHHH---HHHHH
Confidence 99889888887 55544
No 217
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.55 E-value=9.6e-14 Score=158.23 Aligned_cols=167 Identities=18% Similarity=0.348 Sum_probs=119.6
Q ss_pred ccCCChHHHHHH---HHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISA---VSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~---l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.++||++++.. +...+.... .++++|+||||||||++|++||+.+ +..++.+++....
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~~~---------~~~ilL~GppGtGKTtLA~~ia~~~---~~~~~~l~a~~~~------ 73 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEAGR---------LSSMILWGPPGTGKTTLARIIAGAT---DAPFEALSAVTSG------ 73 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHcCC---------CceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccc------
Confidence 458899999766 777765322 2379999999999999999999987 5567766654211
Q ss_pred cccCCCCCCccccccchhHHHH----HhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCC
Q psy14504 517 RLIGAPPGYIGYEEGGYLTEIV----RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 592 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~~~l~~~~----~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 592 (951)
....+.+.+.+ ....+.||||||+|.++...++.|+..+++|. +++|.+|+.
T Consensus 74 -----------~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~-------------iilI~att~ 129 (413)
T PRK13342 74 -----------VKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGT-------------ITLIGATTE 129 (413)
T ss_pred -----------HHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCc-------------EEEEEeCCC
Confidence 11111122222 12356899999999999999999999998743 346655543
Q ss_pred CchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHH
Q psy14504 593 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 672 (951)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 672 (951)
... ..+.+.+++|| .++.|.+++.+++..++...+.... .++ +.+++++++
T Consensus 130 n~~----------------------~~l~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~-----~~~-i~i~~~al~ 180 (413)
T PRK13342 130 NPS----------------------FEVNPALLSRA-QVFELKPLSEEDIEQLLKRALEDKE-----RGL-VELDDEALD 180 (413)
T ss_pred Chh----------------------hhccHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhh-----cCC-CCCCHHHHH
Confidence 221 23578999999 7999999999999999887665531 132 478999999
Q ss_pred HHHHh
Q psy14504 673 KISNI 677 (951)
Q Consensus 673 ~L~~~ 677 (951)
.|+..
T Consensus 181 ~l~~~ 185 (413)
T PRK13342 181 ALARL 185 (413)
T ss_pred HHHHh
Confidence 99884
No 218
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.54 E-value=6.8e-14 Score=159.58 Aligned_cols=183 Identities=19% Similarity=0.323 Sum_probs=126.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc------eEEeccccccchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES------IIRIDMSEFIEKH 513 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~------~~~~~~~~~~~~~ 513 (951)
+.|+||+.++..+...+...+. .+++||+||||+|||++|+++|+.+++.... -.+.+|..+....
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~i--------~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~ 88 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNRA--------AHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGT 88 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCCC--------ceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCC
Confidence 5788999999999999875432 2368999999999999999999999653210 0111122221111
Q ss_pred c--hhcccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEE
Q psy14504 514 S--ISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 587 (951)
Q Consensus 514 ~--~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 587 (951)
. ...+-| ....|.+..+.+.+.+. .+...|+||||+|.++...++.|++.|++ +...++||
T Consensus 89 ~~d~~~i~g--~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEe-----------p~~~~~~I 155 (451)
T PRK06305 89 SLDVLEIDG--ASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEE-----------PPQHVKFF 155 (451)
T ss_pred CCceEEeec--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhc-----------CCCCceEE
Confidence 1 111111 11233333333333332 25678999999999999999999999997 44577888
Q ss_pred EecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccc
Q psy14504 588 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 667 (951)
Q Consensus 588 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~ 667 (951)
++||.. ..+.+.+.+|+ ..+.|.+++.+++.+.+...+ +..+ +.++
T Consensus 156 l~t~~~------------------------~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~-------~~eg--~~i~ 201 (451)
T PRK06305 156 LATTEI------------------------HKIPGTILSRC-QKMHLKRIPEETIIDKLALIA-------KQEG--IETS 201 (451)
T ss_pred EEeCCh------------------------HhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHH-------HHcC--CCCC
Confidence 888642 23557899999 699999999999998855444 3345 6789
Q ss_pred hHHHHHHHHh
Q psy14504 668 KAALKKISNI 677 (951)
Q Consensus 668 ~~~~~~L~~~ 677 (951)
+++++.|+..
T Consensus 202 ~~al~~L~~~ 211 (451)
T PRK06305 202 REALLPIARA 211 (451)
T ss_pred HHHHHHHHHH
Confidence 9999999884
No 219
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.54 E-value=7e-14 Score=166.49 Aligned_cols=191 Identities=17% Similarity=0.295 Sum_probs=126.2
Q ss_pred ccCCChHHHHH---HHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAIS---AVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~---~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.++||++.+. .+...+...+ .++++|+||||||||++|+++|+.+ ...+..+++..... ....
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~~~---------~~slLL~GPpGtGKTTLA~aIA~~~---~~~f~~lna~~~~i-~dir 94 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKADR---------VGSLILYGPPGVGKTTLARIIANHT---RAHFSSLNAVLAGV-KDLR 94 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHh---cCcceeehhhhhhh-HHHH
Confidence 45779999885 4555554222 2379999999999999999999987 44566655532100 0000
Q ss_pred cccCCCCCCccccccchhHHHH-HhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCch
Q psy14504 517 RLIGAPPGYIGYEEGGYLTEIV-RRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 595 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~~~l~~~~-~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~ 595 (951)
.. .......+ ......+|||||||.++...|+.|+..+++|. +++|.+|+..+.
T Consensus 95 ~~------------i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~g~-------------IiLI~aTTenp~ 149 (725)
T PRK13341 95 AE------------VDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVENGT-------------ITLIGATTENPY 149 (725)
T ss_pred HH------------HHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcCce-------------EEEEEecCCChH
Confidence 00 00011111 11345799999999999999999999998743 346665543221
Q ss_pred hhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Q psy14504 596 KIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 675 (951)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 675 (951)
..+.+.+++|+ .++.|+|++.+++..++...+.+....+...+ +.++++++++|+
T Consensus 150 ----------------------~~l~~aL~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~--v~I~deaL~~La 204 (725)
T PRK13341 150 ----------------------FEVNKALVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGDRK--VDLEPEAEKHLV 204 (725)
T ss_pred ----------------------hhhhhHhhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCCcc--cCCCHHHHHHHH
Confidence 12457888998 58999999999999999988876544333333 789999999999
Q ss_pred HhcccccccccccccchHHHHHHH
Q psy14504 676 NIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 676 ~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
... ...+|.+.+. |+.++
T Consensus 205 ~~s---~GD~R~lln~---Le~a~ 222 (725)
T PRK13341 205 DVA---NGDARSLLNA---LELAV 222 (725)
T ss_pred HhC---CCCHHHHHHH---HHHHH
Confidence 843 3334444444 66654
No 220
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.54 E-value=7.4e-14 Score=160.13 Aligned_cols=186 Identities=19% Similarity=0.283 Sum_probs=124.8
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc----e-EEeccccccchh
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES----I-IRIDMSEFIEKH 513 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~----~-~~~~~~~~~~~~ 513 (951)
...++||+.++..+.+++...+. .+.+||+||+|+|||++|+.+|+.+++.... . .+.+|..+....
T Consensus 15 f~diiGq~~i~~~L~~~i~~~~i--------~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~ 86 (486)
T PRK14953 15 FKEVIGQEIVVRILKNAVKLQRV--------SHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGS 86 (486)
T ss_pred HHHccChHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCC
Confidence 35688999999999999975442 2358999999999999999999998642111 0 011121111110
Q ss_pred chhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEe
Q psy14504 514 SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 589 (951)
Q Consensus 514 ~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 589 (951)
...-+....+...|.+..+.+.+.+.. +.+.|++|||+|.++...++.|+..+++ +..++++|++
T Consensus 87 ~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEe-----------pp~~~v~Il~ 155 (486)
T PRK14953 87 FPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEE-----------PPPRTIFILC 155 (486)
T ss_pred CCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhc-----------CCCCeEEEEE
Confidence 000000011112333333445445443 3468999999999999999999999997 4456778877
Q ss_pred cCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchH
Q psy14504 590 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 669 (951)
Q Consensus 590 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 669 (951)
|+... .+.+.+.+|+ ..+.|.|++.+++...+...+ +..+ +.++++
T Consensus 156 tt~~~------------------------kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~-------k~eg--i~id~~ 201 (486)
T PRK14953 156 TTEYD------------------------KIPPTILSRC-QRFIFSKPTKEQIKEYLKRIC-------NEEK--IEYEEK 201 (486)
T ss_pred ECCHH------------------------HHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHH-------HHcC--CCCCHH
Confidence 76311 2346788999 589999999999998855444 4445 678999
Q ss_pred HHHHHHHh
Q psy14504 670 ALKKISNI 677 (951)
Q Consensus 670 ~~~~L~~~ 677 (951)
+++.|+..
T Consensus 202 al~~La~~ 209 (486)
T PRK14953 202 ALDLLAQA 209 (486)
T ss_pred HHHHHHHH
Confidence 99999884
No 221
>PRK06893 DNA replication initiation factor; Validated
Probab=99.54 E-value=1.7e-13 Score=143.12 Aligned_cols=191 Identities=13% Similarity=0.163 Sum_probs=122.0
Q ss_pred hcCCCCCccccHHH--HHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14504 39 RLGKLDPVIGRDDE--IRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 116 (951)
Q Consensus 39 rp~~l~~lvG~~~~--i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 116 (951)
++.+|+++++.+.. ...+.........+.++|+||||||||+|++++|+++... +..+..++......
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~-------~~~~~y~~~~~~~~--- 80 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFIDLQQPFFYIWGGKSSGKSHLLKAVSNHYLLN-------QRTAIYIPLSKSQY--- 80 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEeeHHHhhh---
Confidence 46689999976532 2222222222233457899999999999999999987543 23444444432210
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEE-EEEeecchHHHHhhhcCHHH
Q psy14504 117 YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELH-CIGATTLNEYRQYIEKDAAF 195 (951)
Q Consensus 117 ~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~-vI~at~~~~~~~~~~~~~~l 195 (951)
....++..+. +..+|+|||++.+.+... ......+.+....+++..+ +++++..+. .+-...+.+
T Consensus 81 -------~~~~~~~~~~---~~dlLilDDi~~~~~~~~--~~~~l~~l~n~~~~~~~~illits~~~p~--~l~~~~~~L 146 (229)
T PRK06893 81 -------FSPAVLENLE---QQDLVCLDDLQAVIGNEE--WELAIFDLFNRIKEQGKTLLLISADCSPH--ALSIKLPDL 146 (229)
T ss_pred -------hhHHHHhhcc---cCCEEEEeChhhhcCChH--HHHHHHHHHHHHHHcCCcEEEEeCCCChH--HccccchhH
Confidence 1123334433 234999999998854321 0112333344444555544 444444444 122245899
Q ss_pred hhcce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q psy14504 196 ERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 263 (951)
Q Consensus 196 ~~Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 263 (951)
++|+. .+.+++|+.+++..|++..+.. .++.++++++.++++.+.+.+ +.+..+++..
T Consensus 147 ~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~----~~l~l~~~v~~~L~~~~~~d~------r~l~~~l~~l 207 (229)
T PRK06893 147 ASRLTWGEIYQLNDLTDEQKIIVLQRNAYQ----RGIELSDEVANFLLKRLDRDM------HTLFDALDLL 207 (229)
T ss_pred HHHHhcCCeeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCCH------HHHHHHHHHH
Confidence 99996 5899999999999999887763 478999999999999998877 6666666544
No 222
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.54 E-value=8e-14 Score=155.31 Aligned_cols=173 Identities=16% Similarity=0.285 Sum_probs=114.4
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCC-CceEEEEeCCCCCcHHHHHHHHHHHhccCCCc-eEEecc---ccccch-
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKR-PYGSFMFLGPTGVGKTELCKTLSACIFNNEES-IIRIDM---SEFIEK- 512 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~-p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~-~~~~~~---~~~~~~- 512 (951)
.+.|+||+.+++.+.+++...+........ ..+.+||+||||+|||++|+++|+.+++.... ..+..| ..+...
T Consensus 4 f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~ 83 (394)
T PRK07940 4 WDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGT 83 (394)
T ss_pred hhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCC
Confidence 356899999999999999865532222222 23469999999999999999999998654211 000011 111110
Q ss_pred hchhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 513 HSISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
+.--.++......++.++.+.+.+.+.. +++.|+||||+|.+++..+|.|++.||+ +..+++||+
T Consensus 84 hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEe-----------p~~~~~fIL 152 (394)
T PRK07940 84 HPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEE-----------PPPRTVWLL 152 (394)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhc-----------CCCCCeEEE
Confidence 0000111111112333333445554433 3468999999999999999999999997 455677777
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHH
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 647 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~ 647 (951)
+|+... .+.|.+++|| ..+.|++++.+++.+.+.
T Consensus 153 ~a~~~~------------------------~llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 153 CAPSPE------------------------DVLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred EECChH------------------------HChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 777532 3568899999 799999999999887754
No 223
>KOG0729|consensus
Probab=99.54 E-value=2e-14 Score=142.43 Aligned_cols=159 Identities=25% Similarity=0.409 Sum_probs=120.5
Q ss_pred ccCCChHHHHHHHHHHHHh--------hhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~--------~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
..|-|..+.++.+.+.+.. ...|..+|+ .+|+|||||||||.+|+++|+-. +..|+++-.+++..
T Consensus 177 ~dvggckeqieklrevve~pll~perfv~lgidppk----gvllygppgtgktl~aravanrt---dacfirvigselvq 249 (435)
T KOG0729|consen 177 SDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPK----GVLLYGPPGTGKTLCARAVANRT---DACFIRVIGSELVQ 249 (435)
T ss_pred ccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCC----ceEEeCCCCCchhHHHHHHhccc---CceEEeehhHHHHH
Confidence 4567888888888877643 344554444 49999999999999999999655 78999999999887
Q ss_pred hhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeE
Q psy14504 512 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 578 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 578 (951)
+ |+|+... +.+++.++....||+||||||.+. .++|.++|.++..-.-.|+.
T Consensus 250 k------------yvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdpr--- 314 (435)
T KOG0729|consen 250 K------------YVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPR--- 314 (435)
T ss_pred H------------HhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCC---
Confidence 6 7776554 778888888889999999998753 57899999888742222332
Q ss_pred eecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHH
Q psy14504 579 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIAN 647 (951)
Q Consensus 579 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~ 647 (951)
.|.-++|+||.+.. +.|.|+ +|+|..|.|.-++-+-...|++
T Consensus 315 ---gnikvlmatnrpdt------------------------ldpallrpgrldrkvef~lpdlegrt~i~k 358 (435)
T KOG0729|consen 315 ---GNIKVLMATNRPDT------------------------LDPALLRPGRLDRKVEFGLPDLEGRTHIFK 358 (435)
T ss_pred ---CCeEEEeecCCCCC------------------------cCHhhcCCcccccceeccCCcccccceeEE
Confidence 46668999997553 345555 7999999999988877666633
No 224
>KOG0652|consensus
Probab=99.54 E-value=5.2e-14 Score=139.12 Aligned_cols=160 Identities=21% Similarity=0.384 Sum_probs=113.2
Q ss_pred ccCCChHHHHHHHHHHHH--------hhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 440 KRVVGQDEAISAVSNAIR--------RSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~--------~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
..+-|.+..++.+.+++- ....|..+|+ .+|+|||||||||.+|++.|... ...|..+-.+.++.
T Consensus 171 sDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPK----GvLmYGPPGTGKTlmARAcAaqT---~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 171 SDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPK----GVLMYGPPGTGKTLMARACAAQT---NATFLKLAGPQLVQ 243 (424)
T ss_pred cccccHHHHHHHHHHHhccccccHHHHHhcCCCCCC----ceEeeCCCCCcHHHHHHHHHHhc---cchHHHhcchHHHh
Confidence 357788888888888873 2234444443 59999999999999999999877 44565555555554
Q ss_pred hhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeE
Q psy14504 512 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 578 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 578 (951)
. |+|.... +..+..+++..++|+||||+|.+. .++|..+|.++..- | |.+
T Consensus 244 M------------fIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQL---D--GFs 306 (424)
T KOG0652|consen 244 M------------FIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQL---D--GFS 306 (424)
T ss_pred h------------hhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhh---c--CCC
Confidence 3 5554332 344555677778999999998654 57899888888631 0 111
Q ss_pred eecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHH
Q psy14504 579 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANI 648 (951)
Q Consensus 579 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~ 648 (951)
+..++-+|++||.-. -+.|.|+ +|+|..|.||-++++...+|++-
T Consensus 307 -s~~~vKviAATNRvD------------------------iLDPALlRSGRLDRKIEfP~Pne~aRarIlQI 353 (424)
T KOG0652|consen 307 -SDDRVKVIAATNRVD------------------------ILDPALLRSGRLDRKIEFPHPNEEARARILQI 353 (424)
T ss_pred -CccceEEEeeccccc------------------------ccCHHHhhcccccccccCCCCChHHHHHHHHH
Confidence 224567889999522 3567776 79999999999999999988443
No 225
>CHL00176 ftsH cell division protein; Validated
Probab=99.53 E-value=9.9e-14 Score=163.24 Aligned_cols=191 Identities=21% Similarity=0.322 Sum_probs=123.7
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCC----CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLS----DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 515 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~----~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 515 (951)
+.|+|.+++++.+...+...+.... ....| .++||+||||||||++|+++|..+ +.+++.++++++...
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p-~gVLL~GPpGTGKT~LAralA~e~---~~p~i~is~s~f~~~--- 255 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIP-KGVLLVGPPGTGKTLLAKAIAGEA---EVPFFSISGSEFVEM--- 255 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCC-ceEEEECCCCCCHHHHHHHHHHHh---CCCeeeccHHHHHHH---
Confidence 3466777777777666543321111 11112 369999999999999999999988 779999998887543
Q ss_pred hcccCCCCCCccc--cccchhHHHHHhCCCeEEEEccccccC-----------H---HHHHHHHHHhhcceeecCCCeEe
Q psy14504 516 SRLIGAPPGYIGY--EEGGYLTEIVRRKPYSLILLDEIEKAN-----------S---DVFNILLQILDDGRLTDNRGRTI 579 (951)
Q Consensus 516 ~~l~g~~~~~~g~--~~~~~l~~~~~~~~~~vl~iDEid~~~-----------~---~~~~~Ll~~le~g~~~~~~g~~~ 579 (951)
+.|. ...+.++..++...+|||||||+|.+. . .+++.|+..++.- .
T Consensus 256 ---------~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~---------~ 317 (638)
T CHL00176 256 ---------FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGF---------K 317 (638)
T ss_pred ---------hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccc---------c
Confidence 2222 122445566667778999999999874 2 2345555555531 0
Q ss_pred ecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHHHHHHHHH
Q psy14504 580 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNILKNKL 657 (951)
Q Consensus 580 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~ 657 (951)
...++++|+|||... .++|.++ +|||..|.|++++.++..+|++..+...
T Consensus 318 ~~~~ViVIaaTN~~~------------------------~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~---- 369 (638)
T CHL00176 318 GNKGVIVIAATNRVD------------------------ILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNK---- 369 (638)
T ss_pred CCCCeeEEEecCchH------------------------hhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhc----
Confidence 224678889998632 1345555 5999999999999999999988776541
Q ss_pred HhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 658 LKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 658 ~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
...++..+..++. ..+.|..+||...
T Consensus 370 ------~~~~d~~l~~lA~--~t~G~sgaDL~~l 395 (638)
T CHL00176 370 ------KLSPDVSLELIAR--RTPGFSGADLANL 395 (638)
T ss_pred ------ccchhHHHHHHHh--cCCCCCHHHHHHH
Confidence 1112334555555 2233555666665
No 226
>smart00156 PP2Ac Protein phosphatase 2A homologues, catalytic domain. Large family of serine/threonine phosphatases, that includes PP1, PP2A and PP2B (calcineurin) family members.
Probab=99.53 E-value=1.6e-13 Score=145.67 Aligned_cols=119 Identities=24% Similarity=0.424 Sum_probs=93.6
Q ss_pred cccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhh
Q psy14504 680 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLIN 755 (951)
Q Consensus 680 ~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~ 755 (951)
.+.+.+|||||++.++.++++..++ ++.+.++++||++|||+.+.+++.+++.+ +.++++++||||.+.+....+
T Consensus 28 ~~i~vvGDiHG~~~~l~~ll~~~~~-~~~~~~vfLGD~VDrG~~s~e~l~~l~~lk~~~p~~v~llrGNHE~~~~~~~~g 106 (271)
T smart00156 28 APVTVCGDIHGQFDDLLRLFDLNGP-PPDTNYVFLGDYVDRGPFSIEVILLLFALKILYPNRVVLLRGNHESRSMNEIYG 106 (271)
T ss_pred CCEEEEEeCcCCHHHHHHHHHHcCC-CCCceEEEeCCccCCCCChHHHHHHHHHHHhcCCCCEEEEeccccHHHHHHhcc
Confidence 4568899999999999999988886 56799999999999999999999999876 457899999999988765433
Q ss_pred cccCCccccHHHhhCCCCHHHHHHHHhcCCceEEeC-CEEEEecccCcCC
Q psy14504 756 INKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK-KYLMIHAGVAKQW 804 (951)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~-~~~~vHAG~~p~~ 804 (951)
.. +...........+.+.+|+..||++...+ ++++||||++|..
T Consensus 107 f~-----~e~~~~~~~~l~~~~~~~f~~LPl~aii~~~~~~vHgGi~~~~ 151 (271)
T smart00156 107 FY-----DECKRKYGEEIYEKFQEAFSWLPLAALIDNKILCMHGGLSPDL 151 (271)
T ss_pred ch-----hhhhhhcCHHHHHHHHHHHhhChhheEEcCeEEEEecCCCCcc
Confidence 11 11111111223467889999999987655 6999999999964
No 227
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1.3e-13 Score=161.10 Aligned_cols=185 Identities=19% Similarity=0.281 Sum_probs=124.4
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC---c-------eEEecc--
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE---S-------IIRIDM-- 506 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~---~-------~~~~~~-- 506 (951)
.+.++||+.+++.+.+++...+.. +++||+||+|||||++|+++|+.+++... + --+..|
T Consensus 15 f~eivGQe~i~~~L~~~i~~~ri~--------ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~s 86 (620)
T PRK14954 15 FADITAQEHITHTIQNSLRMDRVG--------HGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECES 86 (620)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCCC--------eeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHH
Confidence 356889999999999988754422 35999999999999999999999965321 0 001111
Q ss_pred -ccccchhch--hcccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEe
Q psy14504 507 -SEFIEKHSI--SRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 579 (951)
Q Consensus 507 -~~~~~~~~~--~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~ 579 (951)
..+...... ..+-| .+.+|.++.+.+.+.+. .+...|++|||+|.++...++.|++.|++
T Consensus 87 C~~~~~g~~~n~~~~d~--~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEe----------- 153 (620)
T PRK14954 87 CRDFDAGTSLNISEFDA--ASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEE----------- 153 (620)
T ss_pred HHHHhccCCCCeEEecc--cccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhC-----------
Confidence 111110000 01101 11222223333333332 24568999999999999999999999997
Q ss_pred ecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHh
Q psy14504 580 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 659 (951)
Q Consensus 580 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~ 659 (951)
+...++||++|+.. ..+.+.+.+|+ .++.|.+++.+++...+...+ ..
T Consensus 154 Pp~~tv~IL~t~~~------------------------~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~-------~~ 201 (620)
T PRK14954 154 PPPHAIFIFATTEL------------------------HKIPATIASRC-QRFNFKRIPLDEIQSQLQMIC-------RA 201 (620)
T ss_pred CCCCeEEEEEeCCh------------------------hhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHH-------HH
Confidence 55677888877532 23456789999 699999999999998854444 33
Q ss_pred cCCccccchHHHHHHHHhc
Q psy14504 660 MNMDLKISKAALKKISNIG 678 (951)
Q Consensus 660 ~~~~l~~~~~~~~~L~~~~ 678 (951)
.+ +.+++++++.|+...
T Consensus 202 eg--i~I~~eal~~La~~s 218 (620)
T PRK14954 202 EG--IQIDADALQLIARKA 218 (620)
T ss_pred cC--CCCCHHHHHHHHHHh
Confidence 45 678999999998843
No 228
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.52 E-value=1.4e-13 Score=159.89 Aligned_cols=202 Identities=15% Similarity=0.184 Sum_probs=154.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCC-ccccccchhHHHHHhCCCeEEEEcc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY-IGYEEGGYLTEIVRRKPYSLILLDE 550 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~-~g~~~~~~l~~~~~~~~~~vl~iDE 550 (951)
+++++|++||||+++|++++........+|+.++|..+........++|...+. .|... .....+..+.+++|||||
T Consensus 164 ~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~lfg~~~~~~~~~~~--~~~g~~~~a~~gtl~lde 241 (441)
T PRK10365 164 TVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESELFGHEKGAFTGADK--RREGRFVEADGGTLFLDE 241 (441)
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHHhcCCCCCCcCCCCc--CCCCceeECCCCEEEEec
Confidence 689999999999999999999887777899999999887766667788876553 22211 112345566789999999
Q ss_pred ccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCc
Q psy14504 551 IEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD 630 (951)
Q Consensus 551 id~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~ 630 (951)
|+.+++..|..|+..++++.+....+......++.+|+||+....... ..+.|+++|+.|+..
T Consensus 242 i~~l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~-----------------~~~~~~~~l~~~l~~ 304 (441)
T PRK10365 242 IGDISPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEV-----------------NAGRFRQDLYYRLNV 304 (441)
T ss_pred cccCCHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHH-----------------HcCCchHHHHHHhcc
Confidence 999999999999999999887654433333456788988887553321 245799999999964
Q ss_pred -EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 631 -IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 631 -~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
.|.+|||.+ +|+..++...+.++....... ...+++++++.|.. |.|+.+++.+... +++++
T Consensus 305 ~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~--~~wpgN~reL~~~---~~~~~ 369 (441)
T PRK10365 305 VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKA--VKGFTPQAMDLLIH--YDWPGNIRELENA---VERAV 369 (441)
T ss_pred ceecCCChhhcchhHHHHHHHHHHHHHHHhCCC--CCCcCHHHHHHHHh--CCCCCHHHHHHHH---HHHHH
Confidence 788888876 689999999888876544322 24599999999988 8888888888887 66655
No 229
>KOG2004|consensus
Probab=99.52 E-value=1.5e-13 Score=153.90 Aligned_cols=178 Identities=22% Similarity=0.342 Sum_probs=132.5
Q ss_pred CccccHHHHHHHHHHHHcCC----C--CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-----
Q psy14504 45 PVIGRDDEIRRAIQVLQRRS----K--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA----- 113 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~~~----~--~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~----- 113 (951)
+-.|.+++.++++.++.-.. . .-++|+||||+|||+++++||+.| +..++.+.++.+..
T Consensus 412 DHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~AL----------nRkFfRfSvGG~tDvAeIk 481 (906)
T KOG2004|consen 412 DHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARAL----------NRKFFRFSVGGMTDVAEIK 481 (906)
T ss_pred cccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHh----------CCceEEEeccccccHHhhc
Confidence 77899999999999876322 1 225788999999999999999999 88899888765531
Q ss_pred C--ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc-----------------CCcE
Q psy14504 114 G--TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-----------------RGEL 174 (951)
Q Consensus 114 ~--~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le-----------------~~~i 174 (951)
| -.|+|....++-.-++.... ..| +++|||+|.+-+. ..| +-..+|+++|. -.+|
T Consensus 482 GHRRTYVGAMPGkiIq~LK~v~t-~NP-liLiDEvDKlG~g--~qG--DPasALLElLDPEQNanFlDHYLdVp~DLSkV 555 (906)
T KOG2004|consen 482 GHRRTYVGAMPGKIIQCLKKVKT-ENP-LILIDEVDKLGSG--HQG--DPASALLELLDPEQNANFLDHYLDVPVDLSKV 555 (906)
T ss_pred ccceeeeccCChHHHHHHHhhCC-CCc-eEEeehhhhhCCC--CCC--ChHHHHHHhcChhhccchhhhccccccchhhe
Confidence 1 13677777777777777763 335 7999999999631 222 23345666663 2478
Q ss_pred EEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHH-HhhhhhcC-----CCCChHHHHHHHHHh
Q psy14504 175 HCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQ-KKYEVHHG-----VEITDPAIVAASELS 243 (951)
Q Consensus 175 ~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~-~~~~~~~~-----~~i~~~~l~~~~~~s 243 (951)
.+|+|.|..+ .++++|+.|+..|+++-+..+|...|.++.+ .+....++ +++++.++..+++.-
T Consensus 556 LFicTAN~id-----tIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~Y 625 (906)
T KOG2004|consen 556 LFICTANVID-----TIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERY 625 (906)
T ss_pred EEEEeccccc-----cCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHH
Confidence 9999999988 8999999999999999999999999996543 33333444 668888877766543
No 230
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.52 E-value=1.5e-13 Score=159.90 Aligned_cols=184 Identities=19% Similarity=0.318 Sum_probs=124.3
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEecc---ccccchh
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDM---SEFIEKH 513 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~---~~~~~~~ 513 (951)
.+.|+||+.+++.+..++...+. .+.+||+||+|+|||++|+++|+.+.+...+ ..+..| ..+....
T Consensus 15 f~diiGqe~iv~~L~~~i~~~~i--------~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~ 86 (563)
T PRK06647 15 FNSLEGQDFVVETLKHSIESNKI--------ANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDN 86 (563)
T ss_pred HHHccCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCC
Confidence 35789999999999999975442 2369999999999999999999999643211 011111 1111110
Q ss_pred ch--hcccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEE
Q psy14504 514 SI--SRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 587 (951)
Q Consensus 514 ~~--~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 587 (951)
.. ..+-|. ...+.+..+.+.+.+. .+.+.|++|||+|.++...+|.|++.+++ +...++||
T Consensus 87 ~~dv~~idga--s~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEe-----------pp~~~vfI 153 (563)
T PRK06647 87 SLDVIEIDGA--SNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEE-----------PPPYIVFI 153 (563)
T ss_pred CCCeEEecCc--ccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhcc-----------CCCCEEEE
Confidence 00 001010 0112122222322222 34578999999999999999999999997 55678888
Q ss_pred EecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccc
Q psy14504 588 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 667 (951)
Q Consensus 588 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~ 667 (951)
++|+.. ..+.+.+.+|+ ..+.|.+++.+++.+.+...+ ...+ +.++
T Consensus 154 ~~tte~------------------------~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~-------~~eg--i~id 199 (563)
T PRK06647 154 FATTEV------------------------HKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVC-------LEDQ--IKYE 199 (563)
T ss_pred EecCCh------------------------HHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHH-------HHcC--CCCC
Confidence 888642 12457889999 589999999999988855433 3345 6789
Q ss_pred hHHHHHHHHh
Q psy14504 668 KAALKKISNI 677 (951)
Q Consensus 668 ~~~~~~L~~~ 677 (951)
++++++|+..
T Consensus 200 ~eAl~lLa~~ 209 (563)
T PRK06647 200 DEALKWIAYK 209 (563)
T ss_pred HHHHHHHHHH
Confidence 9999999984
No 231
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.52 E-value=1e-13 Score=156.86 Aligned_cols=185 Identities=18% Similarity=0.243 Sum_probs=122.3
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc----------eEEecc--
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES----------IIRIDM-- 506 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~----------~~~~~~-- 506 (951)
.+.|+||+.+++.+..++...+. .+++||+||||||||++|+++|+.+++.... -.+..|
T Consensus 15 ~~eiiGq~~~~~~L~~~~~~~~~--------~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~ 86 (397)
T PRK14955 15 FADITAQEHITRTIQNSLRMGRV--------GHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECES 86 (397)
T ss_pred HhhccChHHHHHHHHHHHHhCCc--------ceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHH
Confidence 35788999999999998875432 2359999999999999999999999653100 000011
Q ss_pred -ccccchhc--hhcccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEe
Q psy14504 507 -SEFIEKHS--ISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 579 (951)
Q Consensus 507 -~~~~~~~~--~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~ 579 (951)
..+..... ...+-| .+..|.++.+.+.+.+. .++..|+||||+|.++...++.|++.+++
T Consensus 87 c~~~~~~~~~n~~~~~~--~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEe----------- 153 (397)
T PRK14955 87 CRDFDAGTSLNISEFDA--ASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEE----------- 153 (397)
T ss_pred HHHHhcCCCCCeEeecc--cccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhc-----------
Confidence 11110000 000101 01122222233333332 23468999999999999999999999997
Q ss_pred ecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHh
Q psy14504 580 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLK 659 (951)
Q Consensus 580 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~ 659 (951)
+...++||++++.. ..+.+.+.+|+ .++.|.+++.+++.+.+...++ .
T Consensus 154 p~~~t~~Il~t~~~------------------------~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~-------~ 201 (397)
T PRK14955 154 PPPHAIFIFATTEL------------------------HKIPATIASRC-QRFNFKRIPLEEIQQQLQGICE-------A 201 (397)
T ss_pred CCCCeEEEEEeCCh------------------------HHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHH-------H
Confidence 44567777777531 12446788999 5899999999999988555443 3
Q ss_pred cCCccccchHHHHHHHHhc
Q psy14504 660 MNMDLKISKAALKKISNIG 678 (951)
Q Consensus 660 ~~~~l~~~~~~~~~L~~~~ 678 (951)
.+ +.+++++++.|+...
T Consensus 202 ~g--~~i~~~al~~l~~~s 218 (397)
T PRK14955 202 EG--ISVDADALQLIGRKA 218 (397)
T ss_pred cC--CCCCHHHHHHHHHHc
Confidence 34 779999999998843
No 232
>cd07418 MPP_PP7 PP7, metallophosphatase domain. PP7 is a plant phosphoprotein phosphatase that is highly expressed in a subset of stomata and thought to play an important role in sensory signaling. PP7 acts as a positive regulator of signaling downstream of cryptochrome blue light photoreceptors. PP7 also controls amplification of phytochrome signaling, and interacts with nucleotidediphosphate kinase 2 (NDPK2), a positive regulator of phytochrome signalling. In addition, PP7 interacts with heat shock transcription factor HSF and up-regulates protective heat shock proteins. PP7 may also play a role in salicylic acid-dependent defense signaling. The PPP (phosphoprotein phosphatase) family, to which PP7 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-,
Probab=99.51 E-value=4e-14 Score=153.81 Aligned_cols=123 Identities=20% Similarity=0.302 Sum_probs=95.5
Q ss_pred cccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhh
Q psy14504 680 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLIN 755 (951)
Q Consensus 680 ~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~ 755 (951)
.+.+.+|||||++.+|.++++..++.+..+.++|+||++|||+.+++|+.+++.+ +.++.+++||||.+++.+..+
T Consensus 66 ~~i~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRGp~SlEvl~lL~~lki~~p~~v~lLRGNHE~~~i~~~~G 145 (377)
T cd07418 66 CEVVVVGDVHGQLHDVLFLLEDAGFPDQNRFYVFNGDYVDRGAWGLETFLLLLSWKVLLPDRVYLLRGNHESKFCTSMYG 145 (377)
T ss_pred CCEEEEEecCCCHHHHHHHHHHhCCCCCCceEEEeccccCCCCChHHHHHHHHHHhhccCCeEEEEeeecccccchhhcc
Confidence 4678899999999999999999998655667999999999999999999998876 356889999999988775543
Q ss_pred cccCCccccHHHhhC--CCCHHHHHHHHhcCCceEEeC-CEEEEecccCcCCCH
Q psy14504 756 INKKSKLDTFDDILD--APDKKKLVSWLRTQPLAIYYK-KYLMIHAGVAKQWTA 806 (951)
Q Consensus 756 ~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~p~~~~~~-~~~~vHAG~~p~~~~ 806 (951)
... +....+-. ....+++.+|++.||++...+ ++++||||++|.|+.
T Consensus 146 f~~----E~~~~y~~~~~~l~~~~~~~f~~LPlaavI~~~i~cvHGGI~~~~~l 195 (377)
T cd07418 146 FEQ----EVLTKYGDKGKHVYRKCLGCFEGLPLASIIAGRVYTAHGGLFRSPSL 195 (377)
T ss_pred cch----hhhhhcCchHHHHHHHHHHHHHhCCcEEEECCCEEEECCCcCCcccc
Confidence 211 11111111 122467899999999986654 699999999887653
No 233
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.51 E-value=8.9e-14 Score=162.31 Aligned_cols=164 Identities=23% Similarity=0.327 Sum_probs=113.3
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCC---CCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGL---SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~---~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.|+|++.++..+...+...+... .....+..++||+||||||||++|++||..+ +.+++.++++++...
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~---~~~~~~i~~~~~~~~---- 127 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM---- 127 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc---CCCeeeccHHHHHHH----
Confidence 356788888877776665322110 0011222369999999999999999999988 778998888876543
Q ss_pred cccCCCCCCccccc--cchhHHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhcceeecCCCeEee
Q psy14504 517 RLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRTIN 580 (951)
Q Consensus 517 ~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~iDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~ 580 (951)
+.|... .+.++..++...++||||||+|.+.+ .+++.|+..|+.- ..
T Consensus 128 --------~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~---------~~ 190 (495)
T TIGR01241 128 --------FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGF---------GT 190 (495)
T ss_pred --------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccc---------cC
Confidence 333222 24455666667789999999988642 3456677777631 12
Q ss_pred cCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHHH
Q psy14504 581 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLN 651 (951)
Q Consensus 581 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~ 651 (951)
..+++||+|||.+. .++|.++ +|||..|.++.++.++..+|++..+.
T Consensus 191 ~~~v~vI~aTn~~~------------------------~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~ 239 (495)
T TIGR01241 191 NTGVIVIAATNRPD------------------------VLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAK 239 (495)
T ss_pred CCCeEEEEecCChh------------------------hcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHh
Confidence 24578899998643 2456666 49999999999999999999776654
No 234
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.51 E-value=5e-13 Score=147.85 Aligned_cols=174 Identities=14% Similarity=0.194 Sum_probs=127.7
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.++||+.+.+.+...+...+ ..+.+||+||||+|||++|+++++.+ +.++..+++++ .....+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~~--------~~~~lll~G~~G~GKT~la~~l~~~~---~~~~~~i~~~~-~~~~~i~--- 85 (316)
T PHA02544 21 DECILPAADKETFKSIVKKGR--------IPNMLLHSPSPGTGKTTVAKALCNEV---GAEVLFVNGSD-CRIDFVR--- 85 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcCC--------CCeEEEeeCcCCCCHHHHHHHHHHHh---CccceEeccCc-ccHHHHH---
Confidence 567899999999998887322 12246669999999999999999987 45667777654 1100000
Q ss_pred CCCCCCccccccchhHHHHH----hCCCeEEEEcccccc-CHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCc
Q psy14504 520 GAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKA-NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGS 594 (951)
Q Consensus 520 g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~-~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~ 594 (951)
..+..... ...++||||||+|.+ ....++.|..++++ ...++.||+|||...
T Consensus 86 ------------~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~-----------~~~~~~~Ilt~n~~~ 142 (316)
T PHA02544 86 ------------NRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEA-----------YSKNCSFIITANNKN 142 (316)
T ss_pred ------------HHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHh-----------cCCCceEEEEcCChh
Confidence 01111111 135789999999999 67788889888886 335678999998522
Q ss_pred hhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHH
Q psy14504 595 DKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKI 674 (951)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L 674 (951)
.+.+.+.+|| ..+.|++++.++...++...+..+...+...+ +.++++++..+
T Consensus 143 ------------------------~l~~~l~sR~-~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~--~~i~~~al~~l 195 (316)
T PHA02544 143 ------------------------GIIEPLRSRC-RVIDFGVPTKEEQIEMMKQMIVRCKGILEAEG--VEVDMKVLAAL 195 (316)
T ss_pred ------------------------hchHHHHhhc-eEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcC--CCCCHHHHHHH
Confidence 3567899999 58999999999999998888877776666666 66799999999
Q ss_pred HHhc
Q psy14504 675 SNIG 678 (951)
Q Consensus 675 ~~~~ 678 (951)
+...
T Consensus 196 ~~~~ 199 (316)
T PHA02544 196 VKKN 199 (316)
T ss_pred HHhc
Confidence 9844
No 235
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.51 E-value=2.4e-13 Score=140.89 Aligned_cols=102 Identities=24% Similarity=0.417 Sum_probs=80.7
Q ss_pred CeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccCh
Q psy14504 543 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 622 (951)
Q Consensus 543 ~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 622 (951)
++||||||++.++-+....|.+.|++ + --.++|++||.|...+...--.+ =..++.
T Consensus 292 pGVLFIDEvHmLDIE~FsFlnrAlEs-----------e-~aPIii~AtNRG~~kiRGTd~~s------------PhGIP~ 347 (450)
T COG1224 292 PGVLFIDEVHMLDIECFSFLNRALES-----------E-LAPIIILATNRGMTKIRGTDIES------------PHGIPL 347 (450)
T ss_pred cceEEEechhhhhHHHHHHHHHHhhc-----------c-cCcEEEEEcCCceeeecccCCcC------------CCCCCH
Confidence 69999999999999999999999996 2 23578899999876553321100 124788
Q ss_pred hHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhc
Q psy14504 623 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 623 ~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
+|++|+ .+|...|++++++++|++. ++...+ +.++++|+++|.+.+
T Consensus 348 DlLDRl-lII~t~py~~~EireIi~i-------Ra~ee~--i~l~~~Ale~L~~ig 393 (450)
T COG1224 348 DLLDRL-LIISTRPYSREEIREIIRI-------RAKEED--IELSDDALEYLTDIG 393 (450)
T ss_pred hhhhhe-eEEecCCCCHHHHHHHHHH-------hhhhhc--cccCHHHHHHHHhhc
Confidence 999999 7999999999999999554 444444 889999999999855
No 236
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=99.51 E-value=3.3e-11 Score=143.25 Aligned_cols=147 Identities=24% Similarity=0.372 Sum_probs=105.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCcccccc------chhHHHHHhCCCeE
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG------GYLTEIVRRKPYSL 545 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~------~~l~~~~~~~~~~v 545 (951)
++|+-||+-+|||++...+|+.. +..|++++--+.++ ....+|. |+..+.+ +.+.+++++. -+
T Consensus 890 P~LiQGpTSSGKTSMI~yla~~t---ghkfVRINNHEHTd---lqeYiGT---yvTdd~G~lsFkEGvLVeAlR~G--yW 958 (4600)
T COG5271 890 PLLIQGPTSSGKTSMILYLARET---GHKFVRINNHEHTD---LQEYIGT---YVTDDDGSLSFKEGVLVEALRRG--YW 958 (4600)
T ss_pred cEEEecCCCCCcchHHHHHHHHh---CccEEEecCcccch---HHHHhhc---eeecCCCceeeehhHHHHHHhcC--cE
Confidence 59999999999999999999998 78999998766544 2334443 3322222 4666777754 59
Q ss_pred EEEccccccCHHHHHHHHHHhhc-ceeecCCCe-EeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChh
Q psy14504 546 ILLDEIEKANSDVFNILLQILDD-GRLTDNRGR-TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPE 623 (951)
Q Consensus 546 l~iDEid~~~~~~~~~Ll~~le~-g~~~~~~g~-~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~ 623 (951)
+++||..-++.+|+.+|.++|++ ..+..+... .+....-..+++|..++....+ +++++.+
T Consensus 959 IVLDELNLApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgG-----------------RK~LSrA 1021 (4600)
T COG5271 959 IVLDELNLAPTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGG-----------------RKGLSRA 1021 (4600)
T ss_pred EEeeccccCcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccc-----------------hHHHHHH
Confidence 99999999999999999999986 444444432 2333333444555444433322 4567788
Q ss_pred HhhccCcEEEecCCChhhHHHHHH
Q psy14504 624 FINRIDDIIVFRYLNRKNILSIAN 647 (951)
Q Consensus 624 l~~R~~~~i~f~~l~~~~~~~i~~ 647 (951)
|.+|| .-+.|....++++..|++
T Consensus 1022 FRNRF-lE~hFddipedEle~ILh 1044 (4600)
T COG5271 1022 FRNRF-LEMHFDDIPEDELEEILH 1044 (4600)
T ss_pred HHhhh-HhhhcccCcHHHHHHHHh
Confidence 88999 578899999999999987
No 237
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.51 E-value=6.1e-13 Score=141.85 Aligned_cols=150 Identities=21% Similarity=0.286 Sum_probs=106.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCcccc--------------------cc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYE--------------------EG 531 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~--------------------~~ 531 (951)
++||.||||||||++|+++|+.+ +.+++.++|.+-.. .+.++|...++.... ..
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~l---g~~~~~i~~~~~~~---~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKR---DRPVMLINGDAELT---TSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVD 96 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHh---CCCEEEEeCCccCC---HHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecC
Confidence 69999999999999999999977 77899998876322 234455432221110 01
Q ss_pred chhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCC----eEe-ecCCeEEEEecCCCchhhhhhccccHH
Q psy14504 532 GYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRG----RTI-NFRNTIIVMTSNLGSDKIKEMEKGDKE 606 (951)
Q Consensus 532 ~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g----~~~-~~~~~iiI~ttn~~~~~~~~~~~~~~~ 606 (951)
+.+..+.+ .+++|+|||++++++++++.|+.+|++|.++...+ ..+ ...+..+|+|+|......
T Consensus 97 g~l~~A~~--~g~~lllDEi~r~~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g--------- 165 (262)
T TIGR02640 97 NRLTLAVR--EGFTLVYDEFTRSKPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAG--------- 165 (262)
T ss_pred chHHHHHH--cCCEEEEcchhhCCHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccc---------
Confidence 22333232 45799999999999999999999999998875432 222 235778999999643211
Q ss_pred HHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHH
Q psy14504 607 IIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 649 (951)
Q Consensus 607 ~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~ 649 (951)
...++++|++|| ..+.+..++.++..+|+...
T Consensus 166 ----------~~~l~~aL~~R~-~~i~i~~P~~~~e~~Il~~~ 197 (262)
T TIGR02640 166 ----------VHETQDALLDRL-ITIFMDYPDIDTETAILRAK 197 (262)
T ss_pred ----------eecccHHHHhhc-EEEECCCCCHHHHHHHHHHh
Confidence 123478899999 68899999999999997653
No 238
>PTZ00244 serine/threonine-protein phosphatase PP1; Provisional
Probab=99.51 E-value=4.7e-14 Score=150.33 Aligned_cols=148 Identities=21% Similarity=0.346 Sum_probs=106.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecc
Q psy14504 636 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 715 (951)
Q Consensus 636 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~g 715 (951)
.++.+++.+++.....- +..+..-+.+ -.+.+.+|||||++.++.++++.+++ ++.+.++|+|
T Consensus 24 ~i~~~~i~~l~~~~~~i----l~~e~~ll~i------------~~p~~ViGDIHG~~~~L~~l~~~~~~-~~~~~~lfLG 86 (294)
T PTZ00244 24 LIREEDIRAVLTEVREI----FMSQPMLLEI------------RPPVRVCGDTHGQYYDLLRIFEKCGF-PPYSNYLFLG 86 (294)
T ss_pred CCCHHHHHHHHHHHHHH----HHhCCCeEec------------cCCceeeccCCCCHHHHHHHHHHcCC-CCcccEEEee
Confidence 46778888876554433 2322211222 24578899999999999999999987 4567899999
Q ss_pred cccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhcccCCccccHHHhhCCCCHHHHHHHHhcCCceEEe-
Q psy14504 716 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY- 790 (951)
Q Consensus 716 d~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~- 790 (951)
|++|||+.+.+|+.+++.+ +.++.+++||||.+.+....+.. +.....+.......+.+|++.+|++...
T Consensus 87 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~-----~e~~~~y~~~l~~~~~~~f~~lPlaaii~ 161 (294)
T PTZ00244 87 DYVDRGKHSVETITLQFCYKIVYPENFFLLRGNHECASINKMYGFF-----DDVKRRYNIKLFKAFTDVFNTMPVCCVIS 161 (294)
T ss_pred eEecCCCCHHHHHHHHHHHhhccCCeEEEEecccchHhHhhccChH-----HHHHHHhhHHHHHHHHHHHHhCchheEec
Confidence 9999999999999977653 55789999999998765432211 1111112223357789999999999554
Q ss_pred CCEEEEecccCcCCC
Q psy14504 791 KKYLMIHAGVAKQWT 805 (951)
Q Consensus 791 ~~~~~vHAG~~p~~~ 805 (951)
+++++||||++|.|.
T Consensus 162 ~~il~vHgGi~p~~~ 176 (294)
T PTZ00244 162 EKIICMHGGLSPDLT 176 (294)
T ss_pred CeeEEEcCCCCchhh
Confidence 579999999999875
No 239
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=5.3e-13 Score=146.86 Aligned_cols=201 Identities=17% Similarity=0.168 Sum_probs=137.7
Q ss_pred HhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCC----CCCCcC----CC-------
Q psy14504 38 ARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGE----VPNSLL----SK------- 101 (951)
Q Consensus 38 ~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~----~~~~~~----~~------- 101 (951)
.+|..+++++|+++..+.+...+..++.+| +||+||+|+||||+|+.+|+.+.+.. .|.... .|
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~ 96 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIA 96 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHH
Confidence 589999999999999999999998877666 88999999999999999999987632 111110 01
Q ss_pred -----eEEEEehhhhhcCccc-cccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC-
Q psy14504 102 -----KILLLDIALLLAGTKY-RGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR- 171 (951)
Q Consensus 102 -----~~~~~~~~~l~~~~~~-~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~- 171 (951)
.++.+....-..+.+. ..-....++.+...+. ..++..|++|||+|.|.. ..++.|+..+|.
T Consensus 97 ~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~--------~aanaLLk~LEEp 168 (351)
T PRK09112 97 QGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNR--------NAANAILKTLEEP 168 (351)
T ss_pred cCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCH--------HHHHHHHHHHhcC
Confidence 1111110000000000 0111223444444333 234567999999999943 667888888875
Q ss_pred -CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccC
Q psy14504 172 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR 250 (951)
Q Consensus 172 -~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~ 250 (951)
.+..+|..|+.+. .+.|.+++||..+.|++|+.++...+|+.... . ..++++++..++..+++.
T Consensus 169 p~~~~fiLit~~~~-----~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~----~--~~~~~~~~~~i~~~s~G~---- 233 (351)
T PRK09112 169 PARALFILISHSSG-----RLLPTIRSRCQPISLKPLDDDELKKALSHLGS----S--QGSDGEITEALLQRSKGS---- 233 (351)
T ss_pred CCCceEEEEECChh-----hccHHHHhhccEEEecCCCHHHHHHHHHHhhc----c--cCCCHHHHHHHHHHcCCC----
Confidence 3466666677666 67899999999999999999999999987422 1 126788888888887664
Q ss_pred CCchhHHHHHHHH
Q psy14504 251 FMPDKAIDLIDEA 263 (951)
Q Consensus 251 ~~p~~a~~ll~~a 263 (951)
|+.++.++...
T Consensus 234 --pr~Al~ll~~~ 244 (351)
T PRK09112 234 --VRKALLLLNYG 244 (351)
T ss_pred --HHHHHHHHhcC
Confidence 48888777643
No 240
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.51 E-value=4.4e-13 Score=148.30 Aligned_cols=197 Identities=14% Similarity=0.178 Sum_probs=136.1
Q ss_pred HhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCCC-------------------
Q psy14504 38 ARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------------- 97 (951)
Q Consensus 38 ~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~~------------------- 97 (951)
-+|+++++++|++...+.+...+.+.+.+| +||+||+|+||+++|.++|+.+.+......
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 489999999999999999999999888777 789999999999999999999976431100
Q ss_pred -----cCCCeEEEEehhhhhcCccccc-cHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhh
Q psy14504 98 -----LLSKKILLLDIALLLAGTKYRG-EFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE 168 (951)
Q Consensus 98 -----~~~~~~~~~~~~~l~~~~~~~g-~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~ 168 (951)
.....++.+.......+.+... -....++.+...+. ..+++.|++|||+|.+. ...+|.|+..
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~--------~~aanaLLK~ 164 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMN--------ANAANALLKV 164 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcC--------HHHHHHHHHH
Confidence 0111222222111010000000 11234555555443 23457899999999994 3678889999
Q ss_pred ccC--CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q psy14504 169 LSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 246 (951)
Q Consensus 169 le~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 246 (951)
++. +..++|.+|+.+. .+.+.+++||..+.|++|+.++..++|.... ...++..+..++.++++.
T Consensus 165 LEepp~~~~~IL~t~~~~-----~llpti~SRc~~i~l~~l~~~~i~~~L~~~~--------~~~~~~~~~~l~~~s~Gs 231 (365)
T PRK07471 165 LEEPPARSLFLLVSHAPA-----RLLPTIRSRCRKLRLRPLAPEDVIDALAAAG--------PDLPDDPRAALAALAEGS 231 (365)
T ss_pred HhcCCCCeEEEEEECCch-----hchHHhhccceEEECCCCCHHHHHHHHHHhc--------ccCCHHHHHHHHHHcCCC
Confidence 986 4677778888777 6789999999999999999999998887532 223444456667777664
Q ss_pred cccCCCchhHHHHHH
Q psy14504 247 ISDRFMPDKAIDLID 261 (951)
Q Consensus 247 ~~~~~~p~~a~~ll~ 261 (951)
. ..+..+++
T Consensus 232 p------~~Al~ll~ 240 (365)
T PRK07471 232 V------GRALRLAG 240 (365)
T ss_pred H------HHHHHHhc
Confidence 3 66666654
No 241
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.51 E-value=3.4e-14 Score=140.92 Aligned_cols=181 Identities=22% Similarity=0.290 Sum_probs=83.7
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhc--
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISR-- 517 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~-- 517 (951)
..|+||+.+++++.-+..-. +++||+||||||||++|++++..+- ++..-..-+.....++..
T Consensus 3 ~dI~GQe~aKrAL~iAAaG~-----------h~lLl~GppGtGKTmlA~~l~~lLP----~l~~~e~le~~~i~s~~~~~ 67 (206)
T PF01078_consen 3 SDIVGQEEAKRALEIAAAGG-----------HHLLLIGPPGTGKTMLARRLPSLLP----PLTEEEALEVSKIYSVAGLG 67 (206)
T ss_dssp CCSSSTHHHHHHHHHHHHCC-------------EEEES-CCCTHHHHHHHHHHCS------CCEECCESS--S-TT---S
T ss_pred hhhcCcHHHHHHHHHHHcCC-----------CCeEEECCCCCCHHHHHHHHHHhCC----CCchHHHhhhccccccccCC
Confidence 57899999999998887632 3799999999999999999998872 111111111111111111
Q ss_pred ----ccCCCC-----------CCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCC-CeEe-e
Q psy14504 518 ----LIGAPP-----------GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTI-N 580 (951)
Q Consensus 518 ----l~g~~~-----------~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~-~ 580 (951)
++..++ +.+|... ...-..+..+.++|||+||+-.+++.+++.|++.|++|.++..+ |.++ .
T Consensus 68 ~~~~~~~~~Pfr~phhs~s~~~liGgg~-~~~PGeislAh~GVLflDE~~ef~~~vld~Lr~ple~g~v~i~R~~~~~~~ 146 (206)
T PF01078_consen 68 PDEGLIRQRPFRAPHHSASEAALIGGGR-PPRPGEISLAHRGVLFLDELNEFDRSVLDALRQPLEDGEVTISRAGGSVTY 146 (206)
T ss_dssp ---EEEE---EEEE-TT--HHHHHEEGG-GEEE-CGGGGTTSEEEECETTTS-HHHHHHHHHHHHHSBEEEEETTEEEEE
T ss_pred CCCceecCCCcccCCCCcCHHHHhCCCc-CCCcCHHHHhcCCEEEechhhhcCHHHHHHHHHHHHCCeEEEEECCceEEE
Confidence 000000 0001000 11123456778899999999999999999999999999887544 4443 4
Q ss_pred cCCeEEEEecCCCchhhh----hhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhh
Q psy14504 581 FRNTIIVMTSNLGSDKIK----EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKN 641 (951)
Q Consensus 581 ~~~~iiI~ttn~~~~~~~----~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~ 641 (951)
..+.++|+|+|.-+-... ..|..+..++.++ ..+++-++++|||..|..++++.++
T Consensus 147 Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y-----~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 147 PARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRY-----QSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp B--EEEEEEE-S-----------------------------------------------------
T ss_pred ecccEEEEEeccccccccccccccccccccccccc-----cccccccccccccccccccccccCC
Confidence 578899999997443211 2233334443333 5567889999999999999887664
No 242
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.50 E-value=1.4e-13 Score=162.04 Aligned_cols=185 Identities=19% Similarity=0.277 Sum_probs=123.0
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce----EEeccc---cccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI----IRIDMS---EFIE 511 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~----~~~~~~---~~~~ 511 (951)
...++||+.++..|..++...+. .+++||+||+|||||++|+++|+.+++....- .+..|. .+..
T Consensus 15 f~~liGq~~i~~~L~~~l~~~rl--------~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 15 FDELVGQEAIATTLKNALISNRI--------APAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAA 86 (620)
T ss_pred HhhccChHHHHHHHHHHHHcCCC--------CceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhc
Confidence 35688999999999999885432 13799999999999999999999996532100 000111 1100
Q ss_pred hhchhcccC-CCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEE
Q psy14504 512 KHSISRLIG-APPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTII 586 (951)
Q Consensus 512 ~~~~~~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 586 (951)
..... ++. .....++.+..+.+.+.+.. +.+.|+||||+|.++...++.|++.||+ ....++|
T Consensus 87 g~h~D-~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEe-----------Pp~~tvf 154 (620)
T PRK14948 87 GNALD-VIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEE-----------PPPRVVF 154 (620)
T ss_pred CCCcc-EEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhc-----------CCcCeEE
Confidence 00000 000 00011222222333333332 4468999999999999999999999997 5567888
Q ss_pred EEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCcccc
Q psy14504 587 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKI 666 (951)
Q Consensus 587 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~ 666 (951)
|++|+... .+.|.+.+|| ..+.|.+++.+++...+.... ...+ +.+
T Consensus 155 IL~t~~~~------------------------~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia-------~keg--i~i 200 (620)
T PRK14948 155 VLATTDPQ------------------------RVLPTIISRC-QRFDFRRIPLEAMVQHLSEIA-------EKES--IEI 200 (620)
T ss_pred EEEeCChh------------------------hhhHHHHhhe-eEEEecCCCHHHHHHHHHHHH-------HHhC--CCC
Confidence 88887422 2457899999 699999999998887744433 2334 668
Q ss_pred chHHHHHHHHh
Q psy14504 667 SKAALKKISNI 677 (951)
Q Consensus 667 ~~~~~~~L~~~ 677 (951)
+++++..|+..
T Consensus 201 s~~al~~La~~ 211 (620)
T PRK14948 201 EPEALTLVAQR 211 (620)
T ss_pred CHHHHHHHHHH
Confidence 88888888874
No 243
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.50 E-value=4.6e-13 Score=151.44 Aligned_cols=219 Identities=21% Similarity=0.290 Sum_probs=143.8
Q ss_pred hHHHHhcCCCCCccccHHHHHHHHHHHH----cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 34 LTEKARLGKLDPVIGRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 34 l~e~~rp~~l~~lvG~~~~i~~l~~~l~----~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
|...|.|. +++|++++++.+...+. ...+++++++||||||||++++.+++.+.... ........++.+++.
T Consensus 8 l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~-~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 8 LEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAA-EDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHh-hccCCceEEEEEECC
Confidence 45556674 68999999999988776 35567899999999999999999998874311 000001456666653
Q ss_pred hhhc---------------Ccc--ccc-cHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhh---
Q psy14504 110 LLLA---------------GTK--YRG-EFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE--- 168 (951)
Q Consensus 110 ~l~~---------------~~~--~~g-~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~--- 168 (951)
.... +.. ..+ .....+..++..+.....+.||+|||+|.+.... .+....|...
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~-----~~~L~~l~~~~~~ 158 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDD-----DDLLYQLSRARSN 158 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCC-----cHHHHhHhccccc
Confidence 2210 110 011 1233345555555545567899999999997321 2333333333
Q ss_pred --ccCCcEEEEEeecchHHHHhhhcCHHHhhcce--EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhh
Q psy14504 169 --LSRGELHCIGATTLNEYRQYIEKDAAFERRFQ--KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSY 244 (951)
Q Consensus 169 --le~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~--~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~ 244 (951)
+....+.+|+++|...+. ..+++.+.+||. .+.|++++.+|+.+|++..++.. ..+..++++++..++..+.
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~--~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~ 234 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFR--ENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA--FYDGVLDDGVIPLCAALAA 234 (365)
T ss_pred cCCCCCeEEEEEEECCcchH--hhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCCChhHHHHHHHHHH
Confidence 223678999999987642 257889999995 49999999999999998776521 1233478888877766554
Q ss_pred hhcccCCCchhHHHHHHHHHHHhH
Q psy14504 245 RYISDRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 245 ~~~~~~~~p~~a~~ll~~a~~~~~ 268 (951)
+. .+.++.+++++..|+..+.
T Consensus 235 ~~---~Gd~R~al~~l~~a~~~a~ 255 (365)
T TIGR02928 235 QE---HGDARKAIDLLRVAGEIAE 255 (365)
T ss_pred Hh---cCCHHHHHHHHHHHHHHHH
Confidence 21 1335888888888875543
No 244
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.50 E-value=3.9e-13 Score=155.24 Aligned_cols=205 Identities=17% Similarity=0.161 Sum_probs=137.7
Q ss_pred CCccccHHHHHHHHHHHH----cCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-----
Q psy14504 44 DPVIGRDDEIRRAIQVLQ----RRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA----- 113 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~----~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~----- 113 (951)
+.|.||++++++|..+|. ...++++ +++|+||||||++++.+.+++........+....++.++|..+..
T Consensus 755 D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIY 834 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAY 834 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHH
Confidence 578899999999888765 3445565 599999999999999999887532111112245677777732210
Q ss_pred --------Cc-cccc-cHHHHHHHHHHHHHh-cCCCeEEEEecccccccCCCCCCchh-HHhhhhh-hccCCcEEEEEee
Q psy14504 114 --------GT-KYRG-EFEDRLKKILKEISN-NQKDIIIFIDELHTMIGTGKVEGSID-AGNMLKP-ELSRGELHCIGAT 180 (951)
Q Consensus 114 --------~~-~~~g-~~~~~l~~~~~~a~~-~~~~~iL~iDEid~l~~~~~~~~~~~-~~~~L~~-~le~~~i~vI~at 180 (951)
+. ...| .....+..+|..+.. .....||+|||||.|.... ++ +.+.+.. ......+.||+++
T Consensus 835 qvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~-----QDVLYnLFR~~~~s~SKLiLIGIS 909 (1164)
T PTZ00112 835 QVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT-----QKVLFTLFDWPTKINSKLVLIAIS 909 (1164)
T ss_pred HHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH-----HHHHHHHHHHhhccCCeEEEEEec
Confidence 00 0111 233456666666532 2335699999999997532 23 2222221 1235679999999
Q ss_pred cchHHHHhhhcCHHHhhcceE--EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhh---hhcccCCCchh
Q psy14504 181 TLNEYRQYIEKDAAFERRFQK--ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSY---RYISDRFMPDK 255 (951)
Q Consensus 181 ~~~~~~~~~~~~~~l~~Rf~~--i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~---~~~~~~~~p~~ 255 (951)
|..++.. .+++.+++||.. |.|++++.+|+.+||+.-+... ...+++++++.++..+. |.+ +.
T Consensus 910 NdlDLpe--rLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A----~gVLdDdAIELIArkVAq~SGDA------RK 977 (1164)
T PTZ00112 910 NTMDLPE--RLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC----KEIIDHTAIQLCARKVANVSGDI------RK 977 (1164)
T ss_pred Cchhcch--hhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC----CCCCCHHHHHHHHHhhhhcCCHH------HH
Confidence 9755432 567899999974 9999999999999998776642 24589999999988544 444 77
Q ss_pred HHHHHHHHHH
Q psy14504 256 AIDLIDEAAA 265 (951)
Q Consensus 256 a~~ll~~a~~ 265 (951)
|+++|..|+.
T Consensus 978 ALDILRrAgE 987 (1164)
T PTZ00112 978 ALQICRKAFE 987 (1164)
T ss_pred HHHHHHHHHh
Confidence 8888887775
No 245
>cd07414 MPP_PP1_PPKL PP1, PPKL (PP1 and kelch-like) enzymes, and related proteins, metallophosphatase domain. PP1 (protein phosphatase type 1) is a serine/threonine phosphatase that regulates many cellular processes including: cell-cycle progression, protein synthesis, muscle contraction, carbohydrate metabolism, transcription and neuronal signaling, through its interaction with at least 180 known targeting proteins. PP1 occurs in all tissues and regulates many pathways, ranging from cell-cycle progression to carbohydrate metabolism. Also included here are the PPKL (PP1 and kelch-like) enzymes including the PPQ, PPZ1, and PPZ2 fungal phosphatases. These PPKLs have a large N-terminal kelch repeat in addition to a C-terminal phosphoesterase domain. The PPP (phosphoprotein phosphatase) family, to which PP1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, Rdg
Probab=99.50 E-value=2.5e-13 Score=145.09 Aligned_cols=148 Identities=22% Similarity=0.326 Sum_probs=106.3
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecc
Q psy14504 636 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 715 (951)
Q Consensus 636 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~g 715 (951)
.++.+++.+++.....- +..+..-+.+ -.+.+.+|||||++.++.++++..++ ++.+.++|+|
T Consensus 22 ~~~~~~i~~l~~~~~~i----l~~ep~~l~i------------~~~i~viGDIHG~~~~L~~l~~~~~~-~~~~~~lfLG 84 (293)
T cd07414 22 QLTEAEIRGLCLKSREI----FLSQPILLEL------------EAPLKICGDIHGQYYDLLRLFEYGGF-PPESNYLFLG 84 (293)
T ss_pred CCCHHHHHHHHHHHHHH----HHhCCCeEec------------CCceEEEEecCCCHHHHHHHHHhcCC-CCcceEEEEe
Confidence 56788888875554433 3333211222 13567899999999999999999987 4668999999
Q ss_pred cccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhcccCCccccHHHhhCCCCHHHHHHHHhcCCceE-Ee
Q psy14504 716 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAI-YY 790 (951)
Q Consensus 716 d~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~ 790 (951)
|++|||+.+++++.+++.+ +.++++++||||.+.+....+.... ....+ .......+.+|+..+|++. ..
T Consensus 85 DyVDRG~~s~e~i~ll~~lk~~~p~~i~llrGNHE~~~~~~~~gf~~e-~~~~y----~~~l~~~~~~~f~~lPlaa~i~ 159 (293)
T cd07414 85 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYDE-CKRRY----NIKLWKTFTDCFNCLPVAAIID 159 (293)
T ss_pred eEecCCCCcHHHHHHHHHhhhhCCCcEEEEecccchhhHhhhcchhhH-HHHhh----hHHHHHHHHHHHHHhHHHHhhC
Confidence 9999999999999998876 3468999999999877655332110 00011 1122366789999999984 45
Q ss_pred CCEEEEecccCcCCC
Q psy14504 791 KKYLMIHAGVAKQWT 805 (951)
Q Consensus 791 ~~~~~vHAG~~p~~~ 805 (951)
+++++||||++|...
T Consensus 160 ~~i~cvHgGi~p~~~ 174 (293)
T cd07414 160 EKIFCMHGGLSPDLQ 174 (293)
T ss_pred CcEEEEccCCCcccC
Confidence 679999999999753
No 246
>cd07419 MPP_Bsu1_C Arabidopsis thaliana Bsu1 phosphatase and related proteins, C-terminal metallophosphatase domain. Bsu1 encodes a nuclear serine-threonine protein phosphatase found in plants and protozoans. Bsu1 has a C-terminal phosphatase domain and an N-terminal Kelch-repeat domain. Bsu1 is preferentially expressed in elongating plant cells. It modulates the phosphorylation state of Bes1, a transcriptional regulator phosphorylated by the glycogen synthase kinase Bin2, as part of a steroid hormone signal transduction pathway. The PPP (phosphoprotein phosphatase) family, to which Bsu1 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most
Probab=99.50 E-value=1.1e-13 Score=149.82 Aligned_cols=152 Identities=22% Similarity=0.373 Sum_probs=105.0
Q ss_pred CChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCC-------cc
Q psy14504 637 LNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSP-------EA 709 (951)
Q Consensus 637 l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~-------~~ 709 (951)
++.+++.++++....- ++.+.--+.++ .+.+.+||||||+.+|.++++.+++.+. ..
T Consensus 21 ~~~~~i~~l~~~~~~i----l~~e~~~~~i~------------~~~~viGDIHG~~~~L~~ll~~~g~~~~~~~~~~~~~ 84 (311)
T cd07419 21 FNWNEILELCDAAEDI----FKQEPMVLRLR------------APIKIFGDIHGQFGDLMRLFDEYGSPVTEAAGDIEYI 84 (311)
T ss_pred CCHHHHHHHHHHHHHH----HHhCCCeEeeC------------CCEEEEEeccCCHHHHHHHHHHcCCCcccccCCCcCc
Confidence 5678888775554433 33322112221 3568899999999999999998887432 24
Q ss_pred ceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhcccCCccccHHHhhC--CCCHHHHHHHHhc
Q psy14504 710 NFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILD--APDKKKLVSWLRT 783 (951)
Q Consensus 710 ~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~ 783 (951)
+++|+||++||||.+++|+.+++++ +.++++++||||.+++.+..+.... ....+..... ......+.+|+..
T Consensus 85 ~~vfLGDyVDRGp~s~evl~ll~~lk~~~p~~v~lLRGNHE~~~l~~~~gf~~e-~~~~~~~~~~~~~~l~~~~~~~f~~ 163 (311)
T cd07419 85 DYLFLGDYVDRGSNSLETICLLLALKVKYPNQIHLIRGNHEDRDINALFGFREE-CKERLGEDPNDGDSVWRRINRLFEW 163 (311)
T ss_pred eEEEECCccCCCCChHHHHHHHHHhhhcCCCcEEEeccccchHHHHHHhcccHH-HHHhcCccchhhHHHHHHHHHHHHh
Confidence 7999999999999999999999877 4578899999999988866442210 0001100000 0123567889999
Q ss_pred CCceE-EeCCEEEEecccCcCCC
Q psy14504 784 QPLAI-YYKKYLMIHAGVAKQWT 805 (951)
Q Consensus 784 ~p~~~-~~~~~~~vHAG~~p~~~ 805 (951)
||++. ..+++++||||++|...
T Consensus 164 LPl~avi~~~~l~vHgGi~p~~~ 186 (311)
T cd07419 164 LPLAAIIEDKILCMHGGIGRSIN 186 (311)
T ss_pred CchhheecccEEEEccCCCCCCC
Confidence 99874 45679999999999653
No 247
>cd07417 MPP_PP5_C PP5, C-terminal metallophosphatase domain. Serine/threonine protein phosphatase-5 (PP5) is a member of the PPP gene family of protein phosphatases that is highly conserved among eukaryotes and widely expressed in mammalian tissues. PP5 has a C-terminal phosphatase domain and an extended N-terminal TPR (tetratricopeptide repeat) domain containing three TPR motifs. The PPP (phosphoprotein phosphatase) family, to which PP5 belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP2B (calcineurin), PP4, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -GDXVDRG- and -GNHE-). The PPP enzyme family is ancient with members found in all eukaryotes, and in most bacterial and archeal genomes. Dephosphorylation of phosphoserines and phosphothreonines on target proteins plays a central role in the regulation of many cel
Probab=99.49 E-value=4e-14 Score=152.45 Aligned_cols=118 Identities=19% Similarity=0.289 Sum_probs=92.0
Q ss_pred cccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhh
Q psy14504 680 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLIN 755 (951)
Q Consensus 680 ~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~ 755 (951)
.+.+.+||||||+.++.++++..+|.+..++++|+||++|||+.+++|+.+++.+ ++++++++||||.+.+....+
T Consensus 60 ~~~~VvGDIHG~~~dL~~ll~~~g~~~~~~~ylFLGDyVDRG~~S~Evl~ll~~lki~~p~~v~lLRGNHE~~~~~~~~g 139 (316)
T cd07417 60 EKITVCGDTHGQFYDLLNIFELNGLPSETNPYLFNGDFVDRGSFSVEVILTLFAFKLLYPNHFHLNRGNHETDNMNKMYG 139 (316)
T ss_pred ceeEEeecccCCHHHHHHHHHhcCCCCccCeEEEEeeEecCCCChHHHHHHHHHhhhccCCceEEEeeccchHHHHHHhh
Confidence 3468899999999999999999998777788999999999999999999999876 456889999999988765543
Q ss_pred cccCCccccHHHhhCCCCHHHHHHHHhcCCceEEe-CCEEEEecccCc
Q psy14504 756 INKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY-KKYLMIHAGVAK 802 (951)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~-~~~~~vHAG~~p 802 (951)
.... .... +.......+.+|+..||++... +++++||||+++
T Consensus 140 f~~e----~~~k-~~~~l~~~~~~~f~~LPlaaii~~~~~~vHgGi~~ 182 (316)
T cd07417 140 FEGE----VKAK-YNEQMFDLFSEVFNWLPLAHLINGKVLVVHGGLFS 182 (316)
T ss_pred hcch----hhhc-ccHHHHHHHHHHHHhchHhheeCCeEEEEcccccc
Confidence 2110 0011 1112235678899999998654 579999999964
No 248
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.49 E-value=5.3e-13 Score=149.36 Aligned_cols=184 Identities=18% Similarity=0.335 Sum_probs=123.7
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC--CceEEeccccccchhch--
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSI-- 515 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~-- 515 (951)
+.++|++.+++.+..++.... .++++|+||||||||++|+++++.+++.. .+++.++++++......
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~~---------~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~ 85 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSPN---------LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYL 85 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCCC---------CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhh
Confidence 457799999999988876321 12699999999999999999999997543 35778888765422100
Q ss_pred ------hcccCCCCCCccccccchhHHHH----H----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeec
Q psy14504 516 ------SRLIGAPPGYIGYEEGGYLTEIV----R----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINF 581 (951)
Q Consensus 516 ------~~l~g~~~~~~g~~~~~~l~~~~----~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~ 581 (951)
....+.. ...+......+...+ . ..+..+|||||++.+++..++.|+.++++ ..
T Consensus 86 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~-----------~~ 153 (337)
T PRK12402 86 VEDPRFAHFLGTD-KRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQ-----------YS 153 (337)
T ss_pred hcCcchhhhhhhh-hhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHh-----------cc
Confidence 0000100 000001111222221 1 13457999999999999999999999985 22
Q ss_pred CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcC
Q psy14504 582 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMN 661 (951)
Q Consensus 582 ~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~ 661 (951)
..+.||++++... .+.+.+.+|+ ..+.|.|++.+++.+++...+ ...+
T Consensus 154 ~~~~~Il~~~~~~------------------------~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~-------~~~~ 201 (337)
T PRK12402 154 RTCRFIIATRQPS------------------------KLIPPIRSRC-LPLFFRAPTDDELVDVLESIA-------EAEG 201 (337)
T ss_pred CCCeEEEEeCChh------------------------hCchhhcCCc-eEEEecCCCHHHHHHHHHHHH-------HHcC
Confidence 3466777776422 2345678898 689999999999988855543 3445
Q ss_pred CccccchHHHHHHHHhc
Q psy14504 662 MDLKISKAALKKISNIG 678 (951)
Q Consensus 662 ~~l~~~~~~~~~L~~~~ 678 (951)
+.+++++++.|+...
T Consensus 202 --~~~~~~al~~l~~~~ 216 (337)
T PRK12402 202 --VDYDDDGLELIAYYA 216 (337)
T ss_pred --CCCCHHHHHHHHHHc
Confidence 568999999999843
No 249
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.49 E-value=1.9e-12 Score=130.91 Aligned_cols=193 Identities=23% Similarity=0.344 Sum_probs=136.4
Q ss_pred hcCCCCCccccHHHHHHHH----HHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14504 39 RLGKLDPVIGRDDEIRRAI----QVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 114 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~----~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (951)
.|-.+++++|-+...+.++ +++...+.+|+||+|++|||||++++++..+.... +..++++.-..+.
T Consensus 22 ~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~-------GLRlIev~k~~L~-- 92 (249)
T PF05673_consen 22 DPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQ-------GLRLIEVSKEDLG-- 92 (249)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhc-------CceEEEECHHHhc--
Confidence 4567889999887665555 47778889999999999999999999999988553 6889988876665
Q ss_pred ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC------CcEEEEEeecchHHH-H
Q psy14504 115 TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR------GELHCIGATTLNEYR-Q 187 (951)
Q Consensus 115 ~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~------~~i~vI~at~~~~~~-~ 187 (951)
.+..++..++....+.|||+|++. +... ......|+.+|+. .++++.+|+|+...- +
T Consensus 93 ---------~l~~l~~~l~~~~~kFIlf~DDLs--Fe~~-----d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E 156 (249)
T PF05673_consen 93 ---------DLPELLDLLRDRPYKFILFCDDLS--FEEG-----DTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPE 156 (249)
T ss_pred ---------cHHHHHHHHhcCCCCEEEEecCCC--CCCC-----cHHHHHHHHHhcCccccCCCcEEEEEecchhhccch
Confidence 367777777766778999999864 4332 3445678888863 468888888864321 1
Q ss_pred hh---------hcCH--------HHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHH-HHHHHHhhhhcc
Q psy14504 188 YI---------EKDA--------AFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAI-VAASELSYRYIS 248 (951)
Q Consensus 188 ~~---------~~~~--------~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l-~~~~~~s~~~~~ 248 (951)
.+ ++++ +|..||.. |.|.+|+.++-++|++.+++++ ++.++++.+ ..+.+.+.. .
T Consensus 157 ~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~----g~~~~~e~l~~~Al~wa~~--r 230 (249)
T PF05673_consen 157 SFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERY----GLELDEEELRQEALQWALR--R 230 (249)
T ss_pred hhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHH--c
Confidence 11 1111 67779996 9999999999999999999864 677775333 333333322 1
Q ss_pred cCCCchhHHHHHHH
Q psy14504 249 DRFMPDKAIDLIDE 262 (951)
Q Consensus 249 ~~~~p~~a~~ll~~ 262 (951)
+...++.|...++.
T Consensus 231 g~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 231 GGRSGRTARQFIDD 244 (249)
T ss_pred CCCCHHHHHHHHHH
Confidence 23345555555543
No 250
>KOG0744|consensus
Probab=99.49 E-value=8.2e-14 Score=142.36 Aligned_cols=148 Identities=22% Similarity=0.362 Sum_probs=112.4
Q ss_pred cEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH----hcCCCeEEEE
Q psy14504 68 PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS----NNQKDIIIFI 143 (951)
Q Consensus 68 iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~----~~~~~~iL~i 143 (951)
+||+||||||||+|++++|+.|.-. .......+.+++++..++. ++|.++..+.+..+|+.+. ..+.-+.++|
T Consensus 180 iLlhGPPGTGKTSLCKaLaQkLSIR-~~~~y~~~~liEinshsLF--SKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLI 256 (423)
T KOG0744|consen 180 ILLHGPPGTGKTSLCKALAQKLSIR-TNDRYYKGQLIEINSHSLF--SKWFSESGKLVAKMFQKIQELVEDRGNLVFVLI 256 (423)
T ss_pred EEEeCCCCCChhHHHHHHHHhheee-ecCccccceEEEEehhHHH--HHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 6899999999999999999998432 1223346788999998888 7888888888888877654 2223367889
Q ss_pred ecccccccCCCC-------CCchhHHhhhhhhcc----CCcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHH
Q psy14504 144 DELHTMIGTGKV-------EGSIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEE 211 (951)
Q Consensus 144 DEid~l~~~~~~-------~~~~~~~~~L~~~le----~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~e 211 (951)
||+++|...+.+ .....+.|.++..++ ...+.+.+|+|-.+ .+|.+|-.|-+. .++++|+.+.
T Consensus 257 DEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~NvliL~TSNl~~-----siD~AfVDRADi~~yVG~Pt~~a 331 (423)
T KOG0744|consen 257 DEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNVLILATSNLTD-----SIDVAFVDRADIVFYVGPPTAEA 331 (423)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCEEEEeccchHH-----HHHHHhhhHhhheeecCCccHHH
Confidence 999999865532 112336677777764 35566666666666 899999999996 9999999999
Q ss_pred HHHHHHHHHHhh
Q psy14504 212 TISILRGLQKKY 223 (951)
Q Consensus 212 r~~il~~~~~~~ 223 (951)
+.+|++..+..+
T Consensus 332 i~~IlkscieEL 343 (423)
T KOG0744|consen 332 IYEILKSCIEEL 343 (423)
T ss_pred HHHHHHHHHHHH
Confidence 999999887754
No 251
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.49 E-value=1.6e-13 Score=154.10 Aligned_cols=163 Identities=25% Similarity=0.404 Sum_probs=113.0
Q ss_pred ccCCChHHHHHHHHHHHHhhh--------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSR--------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~--------~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
..|.|.+..++.+..++...- .++. |..++||+||||||||++|+++|..+ ..+|+.+..+++..
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~----~p~gVLL~GPPGTGKT~LAraIA~el---~~~fi~V~~seL~~ 255 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIK----PPKGVILYGPPGTGKTLLAKAVANET---SATFLRVVGSELIQ 255 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCC----CCcEEEEECCCCCCHHHHHHHHHHhh---CCCEEEEecchhhh
Confidence 467899999999988885321 1222 22369999999999999999999988 56788887776644
Q ss_pred hhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeE
Q psy14504 512 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 578 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 578 (951)
. |+|.... +.++..++...++||||||||.+. ..++..++.++..-. |.
T Consensus 256 k------------~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ld-----g~- 317 (438)
T PTZ00361 256 K------------YLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLD-----GF- 317 (438)
T ss_pred h------------hcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHh-----hh-
Confidence 2 4444332 445555666778999999998763 234555555543200 00
Q ss_pred eecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHHH
Q psy14504 579 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLN 651 (951)
Q Consensus 579 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~ 651 (951)
....++.||+|||... .++|.++ +|||..|.|++++.++..+|+...+.
T Consensus 318 ~~~~~V~VI~ATNr~d------------------------~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 318 DSRGDVKVIMATNRIE------------------------SLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred cccCCeEEEEecCChH------------------------HhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 0224678999999632 2356665 59999999999999999999776554
No 252
>cd07416 MPP_PP2B PP2B, metallophosphatase domain. PP2B (calcineurin) is a unique serine/threonine protein phosphatase in its regulation by a second messenger (calcium and calmodulin). PP2B is involved in many biological processes including immune responses, the second messenger cAMP pathway, sodium/potassium ion transport in the nephron, cell cycle progression in lower eukaryotes, cardiac hypertrophy, and memory formation. PP2B is highly conserved from yeast to humans, but is absent from plants. PP2B is a heterodimer consisting of a catalytic subunit (CnA) and a regulatory subunit (CnB); CnB contains four Ca2+ binding motifs referred to as EF hands. The PPP (phosphoprotein phosphatase) family, to which PP2B belongs, is one of two known protein phosphatase families specific for serine and threonine. The PPP family also includes: PP1, PP2A, PP4, PP5, PP6, PP7, Bsu1, RdgC, PrpE, PrpA/PrpB, and ApA4 hydrolase. The PPP catalytic domain is defined by three conserved motifs (-GDXHG-, -G
Probab=99.49 E-value=1.4e-13 Score=148.07 Aligned_cols=120 Identities=18% Similarity=0.318 Sum_probs=93.3
Q ss_pred cccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhh
Q psy14504 680 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLIN 755 (951)
Q Consensus 680 ~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~ 755 (951)
.+.+.+|||||++.++.++++..++ ++.++++|+||++|||+.+++|+.+++.+ +.++++++||||.+.+....+
T Consensus 43 ~~i~ViGDIHG~~~dL~~l~~~~g~-~~~~~ylFLGDyVDRG~~s~Evi~lL~~lki~~p~~v~lLRGNHE~~~l~~~~g 121 (305)
T cd07416 43 APVTVCGDIHGQFYDLLKLFEVGGS-PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFT 121 (305)
T ss_pred CCEEEEEeCCCCHHHHHHHHHhcCC-CCCceEEEECCccCCCCChHHHHHHHHHHHhhcCCCEEEEeCCCcHHHHHHhhC
Confidence 3568899999999999999987774 56789999999999999999999999887 447889999999987765433
Q ss_pred cccCCccccHHHhhCCCCHHHHHHHHhcCCceE-EeCCEEEEecccCcCCC
Q psy14504 756 INKKSKLDTFDDILDAPDKKKLVSWLRTQPLAI-YYKKYLMIHAGVAKQWT 805 (951)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~~~~~~vHAG~~p~~~ 805 (951)
... +....+ .......+.+|+..||++. ..+++++||||++|.+.
T Consensus 122 f~~----e~~~~y-~~~l~~~~~~~f~~LPlaaii~~~i~~vHGGi~p~~~ 167 (305)
T cd07416 122 FKQ----ECKIKY-SERVYDACMEAFDCLPLAALMNQQFLCVHGGLSPELK 167 (305)
T ss_pred chh----HHHHhc-cHHHHHHHHHHHhhccceeEEcCCEEEEcCCCCcccc
Confidence 211 111111 1223467889999999985 45689999999999764
No 253
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.48 E-value=8e-13 Score=140.97 Aligned_cols=165 Identities=21% Similarity=0.323 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC----ccccccHHH-HH
Q psy14504 51 DEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG----TKYRGEFED-RL 125 (951)
Q Consensus 51 ~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~-~l 125 (951)
+.+++++..+.. ..++||.||||||||++|+++|+.+ +.+++.+++...... +.+.+.... ..
T Consensus 9 ~l~~~~l~~l~~--g~~vLL~G~~GtGKT~lA~~la~~l----------g~~~~~i~~~~~~~~~dllg~~~~~~~~~~~ 76 (262)
T TIGR02640 9 RVTSRALRYLKS--GYPVHLRGPAGTGKTTLAMHVARKR----------DRPVMLINGDAELTTSDLVGSYAGYTRKKVH 76 (262)
T ss_pred HHHHHHHHHHhc--CCeEEEEcCCCCCHHHHHHHHHHHh----------CCCEEEEeCCccCCHHHHhhhhcccchhhHH
Confidence 344555555544 4689999999999999999999977 677777765432110 111111000 00
Q ss_pred --------------------HHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------
Q psy14504 126 --------------------KKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------- 172 (951)
Q Consensus 126 --------------------~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~------------- 172 (951)
..++..+. .+.+|+|||++.+.+ ++++.|+.+|+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~g~l~~A~~---~g~~lllDEi~r~~~--------~~q~~Ll~~Le~~~~~i~~~~~~~~~ 145 (262)
T TIGR02640 77 DQFIHNVVKLEDIVRQNWVDNRLTLAVR---EGFTLVYDEFTRSKP--------ETNNVLLSVFEEGVLELPGKRGTSRY 145 (262)
T ss_pred HHHHHHhhhhhcccceeecCchHHHHHH---cCCEEEEcchhhCCH--------HHHHHHHHHhcCCeEEccCCCCCCce
Confidence 11222222 245999999999743 6777788877532
Q ss_pred -----cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 173 -----ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 173 -----~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
.+++|+|+|+..+.....+++++.+||..+.++.|+.++..+|++... .++++..+.++.+.....
T Consensus 146 i~~~~~frvIaTsN~~~~~g~~~l~~aL~~R~~~i~i~~P~~~~e~~Il~~~~---------~~~~~~~~~iv~~~~~~R 216 (262)
T TIGR02640 146 VDVHPEFRVIFTSNPVEYAGVHETQDALLDRLITIFMDYPDIDTETAILRAKT---------DVAEDSAATIVRLVREFR 216 (262)
T ss_pred EecCCCCEEEEeeCCccccceecccHHHHhhcEEEECCCCCHHHHHHHHHHhh---------CCCHHHHHHHHHHHHHHH
Confidence 467999999887666567799999999889999999999999987532 245666666666654443
No 254
>PRK04195 replication factor C large subunit; Provisional
Probab=99.48 E-value=4.8e-13 Score=155.52 Aligned_cols=187 Identities=25% Similarity=0.360 Sum_probs=132.3
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
..++|++.++..+..++..+..| .|..++||+||||||||++|+++|+.+ +..++.++.++......+..++
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g-----~~~~~lLL~GppG~GKTtla~ala~el---~~~~ielnasd~r~~~~i~~~i 85 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG-----KPKKALLLYGPPGVGKTSLAHALANDY---GWEVIELNASDQRTADVIERVA 85 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC-----CCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEEcccccccHHHHHHHH
Confidence 34789999999999999876633 223479999999999999999999998 6678888887765443333332
Q ss_pred CCCCCCccccccchhHHHHHhCCCeEEEEccccccCH----HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCch
Q psy14504 520 GAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANS----DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 595 (951)
Q Consensus 520 g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~----~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~ 595 (951)
+....+ ..++ ...+.||+|||+|.++. ..++.|+..++. .++.+|+++|....
T Consensus 86 ~~~~~~------~sl~----~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~-------------~~~~iIli~n~~~~ 142 (482)
T PRK04195 86 GEAATS------GSLF----GARRKLILLDEVDGIHGNEDRGGARAILELIKK-------------AKQPIILTANDPYD 142 (482)
T ss_pred HHhhcc------Cccc----CCCCeEEEEecCcccccccchhHHHHHHHHHHc-------------CCCCEEEeccCccc
Confidence 221100 0010 12468999999999876 678889999875 23346777775432
Q ss_pred hhhhhccccHHHHHHHHHHHHHhccCh-hHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHH
Q psy14504 596 KIKEMEKGDKEIIKLAVMNEVKIYFRP-EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKI 674 (951)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~f~p-~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L 674 (951)
..+ .+.+|+ ..|.|++++.+++..++...+ ...+ +.+++++++.|
T Consensus 143 ------------------------~~~k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~-------~~eg--i~i~~eaL~~I 188 (482)
T PRK04195 143 ------------------------PSLRELRNAC-LMIEFKRLSTRSIVPVLKRIC-------RKEG--IECDDEALKEI 188 (482)
T ss_pred ------------------------cchhhHhccc-eEEEecCCCHHHHHHHHHHHH-------HHcC--CCCCHHHHHHH
Confidence 223 566777 689999999999998865544 3345 67889999999
Q ss_pred HHhcccccccccccccchHHHHH
Q psy14504 675 SNIGFDLIYGARDVHGCKKSLSI 697 (951)
Q Consensus 675 ~~~~~~~~~g~~dlhg~~~~l~~ 697 (951)
+... -||+..+...|+.
T Consensus 189 a~~s------~GDlR~ain~Lq~ 205 (482)
T PRK04195 189 AERS------GGDLRSAINDLQA 205 (482)
T ss_pred HHHc------CCCHHHHHHHHHH
Confidence 9843 3677777555655
No 255
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.48 E-value=1e-12 Score=143.28 Aligned_cols=107 Identities=23% Similarity=0.363 Sum_probs=78.6
Q ss_pred CeEEEEecccccccCCCC----CCchhHHhhhhhhccC------------CcEEEEEeecchHHHHhhhcCHHHhhcceE
Q psy14504 138 DIIIFIDELHTMIGTGKV----EGSIDAGNMLKPELSR------------GELHCIGATTLNEYRQYIEKDAAFERRFQK 201 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~----~~~~~~~~~L~~~le~------------~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~ 201 (951)
..|+||||||.+....++ .++..+|+.|++++|. ..+.+|+++--... +-..+-|.|.-||+.
T Consensus 250 ~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~Pi 328 (443)
T PRK05201 250 NGIVFIDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVS-KPSDLIPELQGRFPI 328 (443)
T ss_pred CCEEEEEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccce
Confidence 459999999999865432 1224488899999975 46778887653211 112467999999996
Q ss_pred -EEeeCCCHHHHHHHH----HHHHHhhhh---hcC--CCCChHHHHHHHHHhhh
Q psy14504 202 -ILVEEPDIEETISIL----RGLQKKYEV---HHG--VEITDPAIVAASELSYR 245 (951)
Q Consensus 202 -i~~~~p~~~er~~il----~~~~~~~~~---~~~--~~i~~~~l~~~~~~s~~ 245 (951)
+.+.+++.++..+|| ..+.++|.. ..+ +.++++++..+++.+..
T Consensus 329 ~v~L~~L~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~ 382 (443)
T PRK05201 329 RVELDALTEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQ 382 (443)
T ss_pred EEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHH
Confidence 999999999999999 346665544 223 56899999999998865
No 256
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.47 E-value=3.5e-13 Score=142.82 Aligned_cols=102 Identities=24% Similarity=0.363 Sum_probs=69.9
Q ss_pred CeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccCh
Q psy14504 543 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 622 (951)
Q Consensus 543 ~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 622 (951)
++||||||++.++-+....|.+.||. .-..++|++||.+...+...-.. .-..++.
T Consensus 279 pGVLFIDEvHmLDiEcFsfLnralEs------------~~sPiiIlATNRg~~~irGt~~~------------sphGiP~ 334 (398)
T PF06068_consen 279 PGVLFIDEVHMLDIECFSFLNRALES------------ELSPIIILATNRGITKIRGTDII------------SPHGIPL 334 (398)
T ss_dssp E-EEEEESGGGSBHHHHHHHHHHHTS------------TT--EEEEEES-SEEE-BTTS-E------------EETT--H
T ss_pred cceEEecchhhccHHHHHHHHHHhcC------------CCCcEEEEecCceeeeccCccCc------------CCCCCCc
Confidence 69999999999999999999999995 23457889999877654332100 0124788
Q ss_pred hHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhc
Q psy14504 623 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 623 ~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
+|++|+ .+|...|++.+|+.+| +..++...+ +.+++++++.|...+
T Consensus 335 DlLDRl-lII~t~py~~~ei~~I-------l~iR~~~E~--v~i~~~al~~L~~ig 380 (398)
T PF06068_consen 335 DLLDRL-LIIRTKPYSEEEIKQI-------LKIRAKEED--VEISEDALDLLTKIG 380 (398)
T ss_dssp HHHTTE-EEEEE----HHHHHHH-------HHHHHHHCT----B-HHHHHHHHHHH
T ss_pred chHhhc-EEEECCCCCHHHHHHH-------HHhhhhhhc--CcCCHHHHHHHHHHh
Confidence 999999 8999999999999999 555556666 889999999998754
No 257
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.47 E-value=2.7e-12 Score=134.80 Aligned_cols=193 Identities=15% Similarity=0.171 Sum_probs=127.6
Q ss_pred cCCCCCccc--cHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccc
Q psy14504 40 LGKLDPVIG--RDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKY 117 (951)
Q Consensus 40 p~~l~~lvG--~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 117 (951)
+.+|+++++ .+..++.+..++......+++|+||||||||++|+++++.+... +.+++.+++..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~~~~-------~~~~~~i~~~~~~~---- 79 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAAEER-------GKSAIYLPLAELAQ---- 79 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHHHhc-------CCcEEEEeHHHHHH----
Confidence 346777773 45678888887666777899999999999999999999987542 45677788776641
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcC-HHHh
Q psy14504 118 RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKD-AAFE 196 (951)
Q Consensus 118 ~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~-~~l~ 196 (951)
....++.... ...+|+|||+|.+.... .........+....+.+. .+|.+++... . ..... +.+.
T Consensus 80 ------~~~~~~~~~~---~~~lLvIDdi~~l~~~~--~~~~~L~~~l~~~~~~~~-~iIits~~~~-~-~~~~~~~~L~ 145 (226)
T TIGR03420 80 ------ADPEVLEGLE---QADLVCLDDVEAIAGQP--EWQEALFHLYNRVREAGG-RLLIAGRAAP-A-QLPLRLPDLR 145 (226)
T ss_pred ------hHHHHHhhcc---cCCEEEEeChhhhcCCh--HHHHHHHHHHHHHHHcCC-eEEEECCCCh-H-HCCcccHHHH
Confidence 1123333332 23489999999985421 001112222222223344 4445554322 1 11223 7889
Q ss_pred hcce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHh
Q psy14504 197 RRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 197 ~Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
+||. .+++++|+.+++..+++..+.+ .++.+++++++.++..+.+-+ +.+..+++.+-...
T Consensus 146 ~r~~~~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~l~~L~~~~~gn~------r~L~~~l~~~~~~~ 209 (226)
T TIGR03420 146 TRLAWGLVFQLPPLSDEEKIAALQSRAAR----RGLQLPDEVADYLLRHGSRDM------GSLMALLDALDRAS 209 (226)
T ss_pred HHHhcCeeEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCCH------HHHHHHHHHHHHHH
Confidence 8884 4999999999999999876653 467899999999888766654 77778877765433
No 258
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.47 E-value=5.9e-12 Score=149.18 Aligned_cols=197 Identities=19% Similarity=0.287 Sum_probs=128.6
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-------CCCceEEeccccccch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIEK 512 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~~ 512 (951)
..++||+.++..+...+.... + .+++|+||||||||++|+++++.... ...+|+.+++..+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~~~--------~-~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d 224 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVASPF--------P-QHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWD 224 (615)
T ss_pred HhceeCcHHHHHHHHHHhcCC--------C-CeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCC
Confidence 458899999998766553211 1 26999999999999999999887621 2457899998765311
Q ss_pred -h-chhcccCCCCC--Cccccc-------cchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCe----
Q psy14504 513 -H-SISRLIGAPPG--YIGYEE-------GGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGR---- 577 (951)
Q Consensus 513 -~-~~~~l~g~~~~--~~g~~~-------~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~---- 577 (951)
. ....++|.... +.+... .......+....+++|||||++.+++..|+.|+..|+++.+....+.
T Consensus 225 ~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~ 304 (615)
T TIGR02903 225 PREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPD 304 (615)
T ss_pred HHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccC
Confidence 0 11123332110 000000 00111233455678999999999999999999999998765421110
Q ss_pred --E-----------eecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHH
Q psy14504 578 --T-----------INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILS 644 (951)
Q Consensus 578 --~-----------~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~ 644 (951)
. ....++++|++|+.... .+.+.|.+||. .+.|+|++.+++..
T Consensus 305 ~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~-----------------------~l~~aLrSR~~-~i~~~pls~edi~~ 360 (615)
T TIGR02903 305 DPNVPKYIKKLFEEGAPADFVLIGATTRDPE-----------------------EINPALRSRCA-EVFFEPLTPEDIAL 360 (615)
T ss_pred CcccchhhhhhcccCccceEEEEEecccccc-----------------------ccCHHHHhcee-EEEeCCCCHHHHHH
Confidence 0 01223566665554332 24678999995 78999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCccccchHHHHHHHHhc
Q psy14504 645 IANIQLNILKNKLLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 645 i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
|+...+.+ .+ +.+++++++.|....
T Consensus 361 Il~~~a~~-------~~--v~ls~eal~~L~~ys 385 (615)
T TIGR02903 361 IVLNAAEK-------IN--VHLAAGVEELIARYT 385 (615)
T ss_pred HHHHHHHH-------cC--CCCCHHHHHHHHHCC
Confidence 98876543 23 568899999998843
No 259
>KOG1969|consensus
Probab=99.47 E-value=5.3e-13 Score=150.15 Aligned_cols=201 Identities=17% Similarity=0.221 Sum_probs=148.6
Q ss_pred hhcchHHHHhcCCCCCccccHHHHHHHHHHHH----------------------------------cCCCCCcEEEcCCC
Q psy14504 30 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ----------------------------------RRSKNNPVLIGEPG 75 (951)
Q Consensus 30 ~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~----------------------------------~~~~~~iLL~GppG 75 (951)
.+.=|.++|+|+.|.+++|.+.+-+.++.||+ ++...-+||+||||
T Consensus 257 h~kLWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppG 336 (877)
T KOG1969|consen 257 HDKLWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPG 336 (877)
T ss_pred CcceeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCC
Confidence 33469999999999999999999999888774 12223468999999
Q ss_pred CcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccC
Q psy14504 76 VGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGT 152 (951)
Q Consensus 76 tGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~ 152 (951)
-||||||+.+|+.. |..+++++.++-..+ ....+++..++..-. +-..|.+|+|||||--.
T Consensus 337 lGKTTLAHViAkqa----------GYsVvEINASDeRt~----~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~-- 400 (877)
T KOG1969|consen 337 LGKTTLAHVIAKQA----------GYSVVEINASDERTA----PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP-- 400 (877)
T ss_pred CChhHHHHHHHHhc----------CceEEEecccccccH----HHHHHHHHHHHhhccccccCCCcceEEEecccCCc--
Confidence 99999999999998 999999998775432 233444444443322 12568999999999542
Q ss_pred CCCCCchhHHhhhhhhccC---------C--------------cEEEEEeecchHHHHhhhcCHHHhh--cce-EEEeeC
Q psy14504 153 GKVEGSIDAGNMLKPELSR---------G--------------ELHCIGATTLNEYRQYIEKDAAFER--RFQ-KILVEE 206 (951)
Q Consensus 153 ~~~~~~~~~~~~L~~~le~---------~--------------~i~vI~at~~~~~~~~~~~~~~l~~--Rf~-~i~~~~ 206 (951)
..+.+.++.++.. + .-.||+.||..- -|+|+. -|. .|.|.+
T Consensus 401 ------~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY-------aPaLR~Lr~~A~ii~f~~ 467 (877)
T KOG1969|consen 401 ------RAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY-------APALRPLRPFAEIIAFVP 467 (877)
T ss_pred ------HHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCcc-------chhhhhcccceEEEEecC
Confidence 2445556555520 0 124788888652 466666 333 499999
Q ss_pred CCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhHH
Q psy14504 207 PDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKI 269 (951)
Q Consensus 207 p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~ 269 (951)
|+..-..+-|+.++.+ +++.++..++..+++++...+ +..++-|+..+.....
T Consensus 468 p~~s~Lv~RL~~IC~r----E~mr~d~~aL~~L~el~~~DI------RsCINtLQfLa~~~~r 520 (877)
T KOG1969|consen 468 PSQSRLVERLNEICHR----ENMRADSKALNALCELTQNDI------RSCINTLQFLASNVDR 520 (877)
T ss_pred CChhHHHHHHHHHHhh----hcCCCCHHHHHHHHHHhcchH------HHHHHHHHHHHHhccc
Confidence 9999888888888874 688999999999999999998 7778888877665543
No 260
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.47 E-value=2.9e-13 Score=167.12 Aligned_cols=145 Identities=17% Similarity=0.237 Sum_probs=102.5
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhch----hcc-cC------------------------
Q psy14504 470 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI----SRL-IG------------------------ 520 (951)
Q Consensus 470 ~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~----~~l-~g------------------------ 520 (951)
...+||+||||||||.+|++||..+ +.+|+.+.++++...... ..+ +|
T Consensus 1630 PKGILLiGPPGTGKTlLAKALA~es---~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1630 SRGILVIGSIGTGRSYLVKYLATNS---YVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCceEEECCCCCCHHHHHHHHHHhc---CCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 3379999999999999999999998 889999999998753200 000 00
Q ss_pred CCCCCccccc----cchhHHHHHhCCCeEEEEccccccCHH-----HHHHHHHHhhcceeecCCCeEeecCCeEEEEecC
Q psy14504 521 APPGYIGYEE----GGYLTEIVRRKPYSLILLDEIEKANSD-----VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 591 (951)
Q Consensus 521 ~~~~~~g~~~----~~~l~~~~~~~~~~vl~iDEid~~~~~-----~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 591 (951)
...++.+.++ .+.+++.+++.+||||||||||.+... ..+.|+..|+.... .....+++||+|||
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~ds~~ltL~qLLneLDg~~~------~~s~~~VIVIAATN 1780 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNESNYLSLGLLVNSLSRDCE------RCSTRNILVIASTH 1780 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCccceehHHHHHHHhccccc------cCCCCCEEEEEeCC
Confidence 0011122222 245677888888999999999998753 36788888874110 01235788999999
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIAN 647 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~ 647 (951)
.+.. ++|+|+ +|||..|.++.++..+.++++.
T Consensus 1781 RPD~------------------------LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ 1814 (2281)
T CHL00206 1781 IPQK------------------------VDPALIAPNKLNTCIKIRRLLIPQQRKHFF 1814 (2281)
T ss_pred Cccc------------------------CCHhHcCCCCCCeEEEeCCCCchhHHHHHH
Confidence 7543 578888 4999999999888777666643
No 261
>PRK08727 hypothetical protein; Validated
Probab=99.47 E-value=3.7e-12 Score=133.34 Aligned_cols=189 Identities=15% Similarity=0.202 Sum_probs=124.8
Q ss_pred CCCCccccH-HHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcccccc
Q psy14504 42 KLDPVIGRD-DEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGE 120 (951)
Q Consensus 42 ~l~~lvG~~-~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 120 (951)
+|+++++.+ ..+..+...........++|+||+|||||+|+++++..+... +..+..++.....
T Consensus 17 ~f~~f~~~~~n~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~-------~~~~~y~~~~~~~-------- 81 (233)
T PRK08727 17 RFDSYIAAPDGLLAQLQALAAGQSSDWLYLSGPAGTGKTHLALALCAAAEQA-------GRSSAYLPLQAAA-------- 81 (233)
T ss_pred ChhhccCCcHHHHHHHHHHHhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCcEEEEeHHHhh--------
Confidence 788877544 445544444334444569999999999999999999987543 3445555543322
Q ss_pred HHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHHhhcce
Q psy14504 121 FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ 200 (951)
Q Consensus 121 ~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~ 200 (951)
..+...+..... .-+|+|||++.+..... ......+.+....+++ ..+|.|++.+. ..+..+++.+.|||.
T Consensus 82 --~~~~~~~~~l~~---~dlLiIDDi~~l~~~~~--~~~~lf~l~n~~~~~~-~~vI~ts~~~p-~~l~~~~~dL~SRl~ 152 (233)
T PRK08727 82 --GRLRDALEALEG---RSLVALDGLESIAGQRE--DEVALFDFHNRARAAG-ITLLYTARQMP-DGLALVLPDLRSRLA 152 (233)
T ss_pred --hhHHHHHHHHhc---CCEEEEeCcccccCChH--HHHHHHHHHHHHHHcC-CeEEEECCCCh-hhhhhhhHHHHHHHh
Confidence 134445555542 33899999998864321 1112222222222333 44556555432 223456899999963
Q ss_pred ---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHH
Q psy14504 201 ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 264 (951)
Q Consensus 201 ---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 264 (951)
.+.|++|+.+++..|++..+.. .++.++++++..++..+.|.. +.+..+++...
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~----~~l~l~~e~~~~La~~~~rd~------r~~l~~L~~l~ 209 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQR----RGLALDEAAIDWLLTHGEREL------AGLVALLDRLD 209 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhCCCCH------HHHHHHHHHHH
Confidence 5899999999999999987664 378999999999999998877 77777777554
No 262
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.46 E-value=7.3e-13 Score=160.06 Aligned_cols=178 Identities=20% Similarity=0.295 Sum_probs=125.9
Q ss_pred CCC-CccccHHHHHHHHHHHHc------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-
Q psy14504 42 KLD-PVIGRDDEIRRAIQVLQR------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA- 113 (951)
Q Consensus 42 ~l~-~lvG~~~~i~~l~~~l~~------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~- 113 (951)
.|+ +.+|.+++.++++.++.. .....++|+||||||||++++.+|+.+ +.+++.++++....
T Consensus 319 ~l~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l----------~~~~~~i~~~~~~d~ 388 (784)
T PRK10787 319 ILDTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKAT----------GRKYVRMALGGVRDE 388 (784)
T ss_pred HhhhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEEcCCCCCH
Confidence 455 489999999999876662 234568999999999999999999988 66777776544321
Q ss_pred ----C--ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC----------------
Q psy14504 114 ----G--TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---------------- 171 (951)
Q Consensus 114 ----~--~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~---------------- 171 (951)
+ ..|.|.....+...+..+. ...| |+||||+|.+.+... .+..+.|+++++.
T Consensus 389 ~~i~g~~~~~~g~~~G~~~~~l~~~~-~~~~-villDEidk~~~~~~----g~~~~aLlevld~~~~~~~~d~~~~~~~d 462 (784)
T PRK10787 389 AEIRGHRRTYIGSMPGKLIQKMAKVG-VKNP-LFLLDEIDKMSSDMR----GDPASALLEVLDPEQNVAFSDHYLEVDYD 462 (784)
T ss_pred HHhccchhccCCCCCcHHHHHHHhcC-CCCC-EEEEEChhhcccccC----CCHHHHHHHHhccccEEEEeccccccccc
Confidence 1 1244444444444444443 2224 899999999976431 1344567776653
Q ss_pred -CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHH-h-hhh----hcCCCCChHHHHHHHH
Q psy14504 172 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQK-K-YEV----HHGVEITDPAIVAASE 241 (951)
Q Consensus 172 -~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~-~-~~~----~~~~~i~~~~l~~~~~ 241 (951)
+.+.+|+|+|.. .++++|++||..|.+..++.++..+|.+..+. + ... ...+.++++++..+++
T Consensus 463 ls~v~~i~TaN~~------~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~ 533 (784)
T PRK10787 463 LSDVMFVATSNSM------NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIR 533 (784)
T ss_pred CCceEEEEcCCCC------CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHH
Confidence 578889888754 58999999999999999999999999976653 2 111 1236789999998886
No 263
>PRK05642 DNA replication initiation factor; Validated
Probab=99.46 E-value=2.4e-12 Score=134.70 Aligned_cols=188 Identities=14% Similarity=0.199 Sum_probs=125.9
Q ss_pred CCCCcc-ccHHHHHHHHH-HHHc---CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14504 42 KLDPVI-GRDDEIRRAIQ-VLQR---RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 116 (951)
Q Consensus 42 ~l~~lv-G~~~~i~~l~~-~l~~---~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 116 (951)
+|++++ |.......... +... ...++++|+||+|||||+|++++++++... +..++.++...+...
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~-------~~~v~y~~~~~~~~~-- 87 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQR-------GEPAVYLPLAELLDR-- 87 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEeeHHHHHhh--
Confidence 788777 44433322222 2221 123578899999999999999999987432 456677777665421
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHHh
Q psy14504 117 YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFE 196 (951)
Q Consensus 117 ~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l~ 196 (951)
...+++.+.... +|+|||++.+.... .........+....++++.++|++++.+.. +....|.++
T Consensus 88 --------~~~~~~~~~~~d---~LiiDDi~~~~~~~--~~~~~Lf~l~n~~~~~g~~ilits~~~p~~--l~~~~~~L~ 152 (234)
T PRK05642 88 --------GPELLDNLEQYE---LVCLDDLDVIAGKA--DWEEALFHLFNRLRDSGRRLLLAASKSPRE--LPIKLPDLK 152 (234)
T ss_pred --------hHHHHHhhhhCC---EEEEechhhhcCCh--HHHHHHHHHHHHHHhcCCEEEEeCCCCHHH--cCccCccHH
Confidence 123344443232 89999999875432 111234445555556788888888776651 223479999
Q ss_pred hcc---eEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q psy14504 197 RRF---QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 263 (951)
Q Consensus 197 ~Rf---~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 263 (951)
||| ..+.+.+|+.+++..+++..+.. .++.+++++++++++.+.+.. +.+..+++..
T Consensus 153 SRl~~gl~~~l~~~~~e~~~~il~~ka~~----~~~~l~~ev~~~L~~~~~~d~------r~l~~~l~~l 212 (234)
T PRK05642 153 SRLTLALVFQMRGLSDEDKLRALQLRASR----RGLHLTDEVGHFILTRGTRSM------SALFDLLERL 212 (234)
T ss_pred HHHhcCeeeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH------HHHHHHHHHH
Confidence 999 45889999999999999864443 368899999999999988876 6666665554
No 264
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=8.1e-13 Score=155.69 Aligned_cols=185 Identities=22% Similarity=0.321 Sum_probs=124.4
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc---eEEe---ccccccch
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES---IIRI---DMSEFIEK 512 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~---~~~~---~~~~~~~~ 512 (951)
.+.|+||+.+++.+...+...+. .+.+||+||+|+|||++|+++|+.+++.... ..+- .|..+...
T Consensus 16 f~~viGq~~~~~~L~~~i~~~~l--------~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~ 87 (614)
T PRK14971 16 FESVVGQEALTTTLKNAIATNKL--------AHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQ 87 (614)
T ss_pred HHHhcCcHHHHHHHHHHHHcCCC--------CeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcC
Confidence 36789999999999999975442 2358999999999999999999998532110 0000 11111111
Q ss_pred hch--hcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEE
Q psy14504 513 HSI--SRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTII 586 (951)
Q Consensus 513 ~~~--~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 586 (951)
.+. ..+-+ .+..+.+..+.+.+.+.. +.+.|++|||+|.++...++.|++.|++ +..+++|
T Consensus 88 ~~~n~~~ld~--~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEe-----------pp~~tif 154 (614)
T PRK14971 88 RSYNIHELDA--ASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEE-----------PPSYAIF 154 (614)
T ss_pred CCCceEEecc--cccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhC-----------CCCCeEE
Confidence 000 01101 111111222222222222 3468999999999999999999999997 5567888
Q ss_pred EEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCcccc
Q psy14504 587 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKI 666 (951)
Q Consensus 587 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~ 666 (951)
|++|+.. ..+.+.+.+|+ .++.|.+++.+++...+...+ ...+ +.+
T Consensus 155 IL~tt~~------------------------~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia-------~~eg--i~i 200 (614)
T PRK14971 155 ILATTEK------------------------HKILPTILSRC-QIFDFNRIQVADIVNHLQYVA-------SKEG--ITA 200 (614)
T ss_pred EEEeCCc------------------------hhchHHHHhhh-heeecCCCCHHHHHHHHHHHH-------HHcC--CCC
Confidence 8888742 24567899999 689999999999998855443 3445 778
Q ss_pred chHHHHHHHHhc
Q psy14504 667 SKAALKKISNIG 678 (951)
Q Consensus 667 ~~~~~~~L~~~~ 678 (951)
++++++.|+...
T Consensus 201 ~~~al~~La~~s 212 (614)
T PRK14971 201 EPEALNVIAQKA 212 (614)
T ss_pred CHHHHHHHHHHc
Confidence 999999998843
No 265
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.46 E-value=1.7e-12 Score=141.44 Aligned_cols=131 Identities=21% Similarity=0.303 Sum_probs=87.2
Q ss_pred CCeEEEEecccccccCCCC----CCchhHHhhhhhhccC------------CcEEEEEeecchHHHHhhhcCHHHhhcce
Q psy14504 137 KDIIIFIDELHTMIGTGKV----EGSIDAGNMLKPELSR------------GELHCIGATTLNEYRQYIEKDAAFERRFQ 200 (951)
Q Consensus 137 ~~~iL~iDEid~l~~~~~~----~~~~~~~~~L~~~le~------------~~i~vI~at~~~~~~~~~~~~~~l~~Rf~ 200 (951)
...|+||||||.++....+ .++..+|+.|++++|. ..+.+|+++--... +-..+-|.|.-||+
T Consensus 247 ~~GIVfiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~-kp~DlIPEl~GR~P 325 (441)
T TIGR00390 247 QSGIIFIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLA-KPSDLIPELQGRFP 325 (441)
T ss_pred cCCEEEEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCC-ChhhccHHHhCccc
Confidence 3459999999999865422 2234488899999975 46778887653221 11146799999999
Q ss_pred E-EEeeCCCHHHHHHHH----HHHHHhhhh---hcC--CCCChHHHHHHHHHhhhh-cccCCC-chhHHHHHHHHHHHhH
Q psy14504 201 K-ILVEEPDIEETISIL----RGLQKKYEV---HHG--VEITDPAIVAASELSYRY-ISDRFM-PDKAIDLIDEAAAKIK 268 (951)
Q Consensus 201 ~-i~~~~p~~~er~~il----~~~~~~~~~---~~~--~~i~~~~l~~~~~~s~~~-~~~~~~-p~~a~~ll~~a~~~~~ 268 (951)
. +.+.+++.++...|| ..+.++|.. ..+ +.++++++..+++.+... ...+.. .+....+++.......
T Consensus 326 i~v~L~~L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~ 405 (441)
T TIGR00390 326 IRVELQALTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDIS 405 (441)
T ss_pred eEEECCCCCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHH
Confidence 6 999999999999999 356665543 333 557999999999987641 001122 2334455555544433
No 266
>PHA02244 ATPase-like protein
Probab=99.45 E-value=4.4e-12 Score=136.42 Aligned_cols=171 Identities=12% Similarity=0.152 Sum_probs=112.2
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 518 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 518 (951)
....+|+..........+.++... ..++||+||||||||++|++||..+ +.+++.++. +.+ ...+
T Consensus 95 d~~~ig~sp~~~~~~~ri~r~l~~-------~~PVLL~GppGtGKTtLA~aLA~~l---g~pfv~In~--l~d---~~~L 159 (383)
T PHA02244 95 DTTKIASNPTFHYETADIAKIVNA-------NIPVFLKGGAGSGKNHIAEQIAEAL---DLDFYFMNA--IMD---EFEL 159 (383)
T ss_pred CCcccCCCHHHHHHHHHHHHHHhc-------CCCEEEECCCCCCHHHHHHHHHHHh---CCCEEEEec--ChH---HHhh
Confidence 344566666665444444333211 1159999999999999999999997 668887763 221 2223
Q ss_pred cCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhh
Q psy14504 519 IGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 598 (951)
Q Consensus 519 ~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 598 (951)
.|... ..|.-..+.+...+ ..+++|||||++.++++++..|..+++++.+....+......++.+|+|+|.....+.
T Consensus 160 ~G~i~-~~g~~~dgpLl~A~--~~GgvLiLDEId~a~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~ 236 (383)
T PHA02244 160 KGFID-ANGKFHETPFYEAF--KKGGLFFIDEIDASIPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGAD 236 (383)
T ss_pred ccccc-ccccccchHHHHHh--hcCCEEEEeCcCcCCHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcc
Confidence 33211 11111112333333 4568999999999999999999999998877766555555678999999998443322
Q ss_pred hhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhh
Q psy14504 599 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKN 641 (951)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~ 641 (951)
..+.. ...+.+++++|| ..|.|..+++.+
T Consensus 237 ~~y~G-------------~k~L~~AllDRF-v~I~~dyp~~~E 265 (383)
T PHA02244 237 HIYVA-------------RNKIDGATLDRF-APIEFDYDEKIE 265 (383)
T ss_pred cccCC-------------CcccCHHHHhhc-EEeeCCCCcHHH
Confidence 21100 235789999999 689998887543
No 267
>PTZ00239 serine/threonine protein phosphatase 2A; Provisional
Probab=99.45 E-value=3.1e-13 Score=144.50 Aligned_cols=148 Identities=20% Similarity=0.326 Sum_probs=105.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecc
Q psy14504 636 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 715 (951)
Q Consensus 636 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~g 715 (951)
.++.+++.++++....- +..+.--+.+ ..+.+.+|||||++.++.++++..++ .+.+.++++|
T Consensus 15 ~l~~~~i~~l~~~~~~i----l~~e~~~~~i------------~~~i~vvGDIHG~~~~L~~l~~~~~~-~~~~~~lfLG 77 (303)
T PTZ00239 15 CLPERDLKLICERAKEI----FLEESNVQPV------------RAPVNVCGDIHGQFYDLQALFKEGGD-IPNANYIFIG 77 (303)
T ss_pred CCCHHHHHHHHHHHHHH----HHhCCCeEec------------CCCEEEEEeCCCCHHHHHHHHHhcCC-CCCceEEEee
Confidence 46677877775554333 2222211122 14568899999999999999988875 4668999999
Q ss_pred cccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhcccCCccccHHHhhCCCCHHHHHHHHhcCCceE-Ee
Q psy14504 716 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAI-YY 790 (951)
Q Consensus 716 d~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~ 790 (951)
|++|||+.+.+++.+++.+ +.++.+++||||.+.+....+.. .+....+-.......+.+|+..||++. ..
T Consensus 78 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~~gf~----~e~~~ky~~~~~~~~~~~~f~~LPlaaii~ 153 (303)
T PTZ00239 78 DFVDRGYNSVETMEYLLCLKVKYPGNITLLRGNHESRQCTQVYGFY----EEILRKYGNSNPWRLFMDVFDCLPLAALIE 153 (303)
T ss_pred eEcCCCCCHHHHHHHHHHhhhcCCCcEEEEecccchHHHhhhcChH----HHHHHHhcChhHHHHHHHHHHhCchheEEc
Confidence 9999999999999999876 45789999999998776543211 112222222223456789999999984 45
Q ss_pred CCEEEEecccCcCC
Q psy14504 791 KKYLMIHAGVAKQW 804 (951)
Q Consensus 791 ~~~~~vHAG~~p~~ 804 (951)
+++++||||++|..
T Consensus 154 ~~i~cvHgGi~p~~ 167 (303)
T PTZ00239 154 GQILCVHGGLSPDM 167 (303)
T ss_pred CeEEEEcCccCccc
Confidence 67999999999964
No 268
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.45 E-value=2e-12 Score=145.77 Aligned_cols=183 Identities=19% Similarity=0.334 Sum_probs=119.9
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc------ccch
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE------FIEK 512 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~------~~~~ 512 (951)
...++||+.+++.+...+...+ ..+.+||+||||+|||++|+++++.+.+....- ...|.. +...
T Consensus 13 ~~~iig~~~~~~~l~~~~~~~~--------~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~-~~~c~~c~~c~~~~~~ 83 (355)
T TIGR02397 13 FEDVIGQEHIVQTLKNAIKNGR--------IAHAYLFSGPRGTGKTSIARIFAKALNCQNGPD-GEPCNECESCKEINSG 83 (355)
T ss_pred HhhccCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-CCCCCCCHHHHHHhcC
Confidence 3568899999999999887433 123689999999999999999999986432110 001110 0000
Q ss_pred h--chhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEE
Q psy14504 513 H--SISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTII 586 (951)
Q Consensus 513 ~--~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 586 (951)
. .+..+-+ .+..+.+..+.+...+.. +.+.|++|||+|.++...++.|++.+++ +..++++
T Consensus 84 ~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~-----------~~~~~~l 150 (355)
T TIGR02397 84 SSLDVIEIDA--ASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEE-----------PPEHVVF 150 (355)
T ss_pred CCCCEEEeec--cccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhC-----------CccceeE
Confidence 0 0000000 001111111223333322 3457999999999999999999999986 3456778
Q ss_pred EEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCcccc
Q psy14504 587 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKI 666 (951)
Q Consensus 587 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~ 666 (951)
|++|+... .+.+.+.+|+ ..+.|++++.+++.+++...+ +..+ +.+
T Consensus 151 Il~~~~~~------------------------~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~-------~~~g--~~i 196 (355)
T TIGR02397 151 ILATTEPH------------------------KIPATILSRC-QRFDFKRIPLEDIVERLKKIL-------DKEG--IKI 196 (355)
T ss_pred EEEeCCHH------------------------HHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHH-------HHcC--CCC
Confidence 88876421 2346788898 689999999999999865554 3345 678
Q ss_pred chHHHHHHHHh
Q psy14504 667 SKAALKKISNI 677 (951)
Q Consensus 667 ~~~~~~~L~~~ 677 (951)
+++++++|+..
T Consensus 197 ~~~a~~~l~~~ 207 (355)
T TIGR02397 197 EDEALELIARA 207 (355)
T ss_pred CHHHHHHHHHH
Confidence 89999999884
No 269
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.45 E-value=7.4e-13 Score=148.73 Aligned_cols=168 Identities=25% Similarity=0.352 Sum_probs=112.5
Q ss_pred hhccCCChHHHHHHHHHHHHhhhcCC----CCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh
Q psy14504 438 LCKRVVGQDEAISAVSNAIRRSRSGL----SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH 513 (951)
Q Consensus 438 l~~~v~Gq~~~~~~l~~~~~~~~~~~----~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~ 513 (951)
..+.+.|.+..++.+...+....... ...-.|..++||+||||||||++|+++|+.+ +.+++.+.++++...
T Consensus 120 ~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l---~~~~~~v~~~~l~~~- 195 (364)
T TIGR01242 120 SYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET---NATFIRVVGSELVRK- 195 (364)
T ss_pred CHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhC---CCCEEecchHHHHHH-
Confidence 44678999999999998875431110 0001122369999999999999999999988 556777766554332
Q ss_pred chhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeEee
Q psy14504 514 SISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTIN 580 (951)
Q Consensus 514 ~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~ 580 (951)
|+|.... +.++..++...++||||||+|.+. +.++..+.+++..-.-. ..
T Consensus 196 -----------~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~------~~ 258 (364)
T TIGR01242 196 -----------YIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGF------DP 258 (364)
T ss_pred -----------hhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCC------CC
Confidence 3333221 334455566677999999999873 45566666665431000 02
Q ss_pred cCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHH
Q psy14504 581 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 581 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
..++.||+|||... .+++.++ +|||..+.|++++.++..+|+...+
T Consensus 259 ~~~v~vI~ttn~~~------------------------~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~ 306 (364)
T TIGR01242 259 RGNVKVIAATNRPD------------------------ILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHT 306 (364)
T ss_pred CCCEEEEEecCChh------------------------hCChhhcCcccCceEEEeCCcCHHHHHHHHHHHH
Confidence 34678999999642 2455565 5999999999999999999976544
No 270
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=8.9e-13 Score=156.08 Aligned_cols=186 Identities=18% Similarity=0.277 Sum_probs=121.7
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eE-Eecc---ccccch
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--II-RIDM---SEFIEK 512 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~-~~~~---~~~~~~ 512 (951)
.+.|+||+.+++.+..++...+. .+.+||+||+|||||++|+++|+.+++.... .. +-.| ..+...
T Consensus 15 ~~eiiGq~~~~~~L~~~i~~~~i--------~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~ 86 (585)
T PRK14950 15 FAELVGQEHVVQTLRNAIAEGRV--------AHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEG 86 (585)
T ss_pred HHHhcCCHHHHHHHHHHHHhCCC--------ceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcC
Confidence 35789999999999998875442 2357999999999999999999998532210 00 0011 111110
Q ss_pred hchhcccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 513 HSISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
....-+.-.....++.+..+.+.+.+. .+...|+||||+|.++...++.|++.|++ ...+++||+
T Consensus 87 ~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEe-----------pp~~tv~Il 155 (585)
T PRK14950 87 SAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEE-----------PPPHAIFIL 155 (585)
T ss_pred CCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhc-----------CCCCeEEEE
Confidence 000000000001222222233333332 24468999999999999999999999997 445677888
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
+++.. ..+.+.+.+|+ ..+.|.+++.+++..++...+ ...+ +.+++
T Consensus 156 ~t~~~------------------------~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a-------~~eg--l~i~~ 201 (585)
T PRK14950 156 ATTEV------------------------HKVPATILSRC-QRFDFHRHSVADMAAHLRKIA-------AAEG--INLEP 201 (585)
T ss_pred EeCCh------------------------hhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 77631 12346778999 589999999999988854443 3345 66899
Q ss_pred HHHHHHHHh
Q psy14504 669 AALKKISNI 677 (951)
Q Consensus 669 ~~~~~L~~~ 677 (951)
+++..|+..
T Consensus 202 eal~~La~~ 210 (585)
T PRK14950 202 GALEAIARA 210 (585)
T ss_pred HHHHHHHHH
Confidence 999999884
No 271
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.44 E-value=2e-12 Score=145.82 Aligned_cols=187 Identities=22% Similarity=0.320 Sum_probs=127.8
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC-------ceEEeccccccch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-------SIIRIDMSEFIEK 512 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~-------~~~~~~~~~~~~~ 512 (951)
+.++||+.+++.+...+...+ ..+++||+||||+|||++|+++++.++..+. ++..+++.
T Consensus 17 ~~iig~~~~~~~l~~~i~~~~--------~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~----- 83 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENNH--------LAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD----- 83 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcCC--------CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec-----
Confidence 567899999999999987432 1237999999999999999999999864221 11111110
Q ss_pred hchhcccCCCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 513 HSISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
..+..+.+..+.+.+.+.. +...||+|||+|.++...++.|+..+++ +...+++|+
T Consensus 84 ---------~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~-----------~~~~~~~Il 143 (367)
T PRK14970 84 ---------AASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEE-----------PPAHAIFIL 143 (367)
T ss_pred ---------cccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhC-----------CCCceEEEE
Confidence 0011111111222222222 3457999999999999999999999986 345677888
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK 668 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~ 668 (951)
+++.. ..+.+.+.+|+ .++.|.+++.+++..++...+ ...+ +.+++
T Consensus 144 ~~~~~------------------------~kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~-------~~~g--~~i~~ 189 (367)
T PRK14970 144 ATTEK------------------------HKIIPTILSRC-QIFDFKRITIKDIKEHLAGIA-------VKEG--IKFED 189 (367)
T ss_pred EeCCc------------------------ccCCHHHHhcc-eeEecCCccHHHHHHHHHHHH-------HHcC--CCCCH
Confidence 77642 23457788999 589999999999998855444 3345 67899
Q ss_pred HHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 669 AALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 669 ~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
+++++|+... -+|+......++++.
T Consensus 190 ~al~~l~~~~------~gdlr~~~~~lekl~ 214 (367)
T PRK14970 190 DALHIIAQKA------DGALRDALSIFDRVV 214 (367)
T ss_pred HHHHHHHHhC------CCCHHHHHHHHHHHH
Confidence 9999999842 245555555566655
No 272
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.44 E-value=4.5e-13 Score=127.68 Aligned_cols=116 Identities=29% Similarity=0.474 Sum_probs=86.3
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCcccccc--chhHHHHHhCC-CeEEEEc
Q psy14504 473 FMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKP-YSLILLD 549 (951)
Q Consensus 473 ~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~-~~vl~iD 549 (951)
+||+||||||||++|+.+|+.+ +.+++.++++++.+. +.+.... ..++..+.... ++|||||
T Consensus 1 ill~G~~G~GKT~l~~~la~~l---~~~~~~i~~~~~~~~------------~~~~~~~~i~~~~~~~~~~~~~~vl~iD 65 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYL---GFPFIEIDGSELISS------------YAGDSEQKIRDFFKKAKKSAKPCVLFID 65 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHT---TSEEEEEETTHHHTS------------STTHHHHHHHHHHHHHHHTSTSEEEEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhc---ccccccccccccccc------------cccccccccccccccccccccceeeeec
Confidence 6899999999999999999998 778999999887642 2222221 23333444454 7999999
Q ss_pred cccccCHHH-----------HHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHh
Q psy14504 550 EIEKANSDV-----------FNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI 618 (951)
Q Consensus 550 Eid~~~~~~-----------~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (951)
|+|.+.+.. ++.|+..+++.. ...+++++|+|||. . .
T Consensus 66 e~d~l~~~~~~~~~~~~~~~~~~L~~~l~~~~--------~~~~~~~vI~ttn~-~-----------------------~ 113 (132)
T PF00004_consen 66 EIDKLFPKSQPSSSSFEQRLLNQLLSLLDNPS--------SKNSRVIVIATTNS-P-----------------------D 113 (132)
T ss_dssp TGGGTSHHCSTSSSHHHHHHHHHHHHHHHTTT--------TTSSSEEEEEEESS-G-----------------------G
T ss_pred cchhcccccccccccccccccceeeecccccc--------cccccceeEEeeCC-h-----------------------h
Confidence 999988765 889999998621 01246899999997 2 2
Q ss_pred ccChhHh-hccCcEEEec
Q psy14504 619 YFRPEFI-NRIDDIIVFR 635 (951)
Q Consensus 619 ~f~p~l~-~R~~~~i~f~ 635 (951)
.+.|.++ +||+..+.|+
T Consensus 114 ~i~~~l~~~rf~~~i~~~ 131 (132)
T PF00004_consen 114 KIDPALLRSRFDRRIEFP 131 (132)
T ss_dssp GSCHHHHSTTSEEEEEE-
T ss_pred hCCHhHHhCCCcEEEEcC
Confidence 4688999 9999888775
No 273
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.44 E-value=6.3e-12 Score=142.90 Aligned_cols=199 Identities=15% Similarity=0.193 Sum_probs=125.3
Q ss_pred CCCCCcc-ccHHHH--HHHHHHHHc------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14504 41 GKLDPVI-GRDDEI--RRAIQVLQR------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 111 (951)
Q Consensus 41 ~~l~~lv-G~~~~i--~~l~~~l~~------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l 111 (951)
-+|+.+| |....+ ..+..+... ...++++|+||||+|||+|++++++.+... +..++.++...+
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~-------~~~v~yi~~~~f 180 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRES-------GGKILYVRSELF 180 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHc-------CCCEEEeeHHHH
Confidence 3888887 655443 344444321 123579999999999999999999988542 566777776544
Q ss_pred hcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhc
Q psy14504 112 LAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEK 191 (951)
Q Consensus 112 ~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~ 191 (951)
.. .........-...|.... ...-||+|||++.+.+.. ....+....+..+.+.+..++++++..+. .+..+
T Consensus 181 ~~--~~~~~l~~~~~~~f~~~~--~~~dvLiIDDiq~l~~k~--~~qeelf~l~N~l~~~~k~IIlts~~~p~--~l~~l 252 (445)
T PRK12422 181 TE--HLVSAIRSGEMQRFRQFY--RNVDALFIEDIEVFSGKG--ATQEEFFHTFNSLHTEGKLIVISSTCAPQ--DLKAM 252 (445)
T ss_pred HH--HHHHHHhcchHHHHHHHc--ccCCEEEEcchhhhcCCh--hhHHHHHHHHHHHHHCCCcEEEecCCCHH--HHhhh
Confidence 31 111111100011222221 223499999999885422 11223333444444566655555544443 13357
Q ss_pred CHHHhhcce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHH
Q psy14504 192 DAAFERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 264 (951)
Q Consensus 192 ~~~l~~Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 264 (951)
++.+.+||. .+.+.+|+.+++..||+..+.. .++.++++++..++....+.+ +.....+...+
T Consensus 253 ~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~----~~~~l~~evl~~la~~~~~di------r~L~g~l~~l~ 318 (445)
T PRK12422 253 EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEA----LSIRIEETALDFLIEALSSNV------KSLLHALTLLA 318 (445)
T ss_pred HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH------HHHHHHHHHHH
Confidence 899999995 4999999999999999987775 468899999999998877655 55555555553
No 274
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.44 E-value=5.4e-12 Score=145.70 Aligned_cols=201 Identities=14% Similarity=0.301 Sum_probs=130.7
Q ss_pred CCCCcc-ccHH--HHHHHHHHHHcC--CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14504 42 KLDPVI-GRDD--EIRRAIQVLQRR--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 116 (951)
Q Consensus 42 ~l~~lv-G~~~--~i~~l~~~l~~~--~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 116 (951)
+|++++ |... .+..+..+...+ ..++++|+||||||||+|++++++++.... | +..++.++...+. ..
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~-~----~~~v~yi~~~~~~--~~ 192 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKN-P----NAKVVYVTSEKFT--ND 192 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHH--HH
Confidence 788865 5443 444444444432 235689999999999999999999985431 1 5667777776553 11
Q ss_pred ccccHHH-HHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHH
Q psy14504 117 YRGEFED-RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAF 195 (951)
Q Consensus 117 ~~g~~~~-~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l 195 (951)
+...... ....+..... ...+|+|||+|.+.... ....+....+....+.+..++|+++.++. .+..+++.+
T Consensus 193 ~~~~~~~~~~~~~~~~~~---~~dlLiiDDi~~l~~~~--~~~~~l~~~~n~l~~~~~~iiits~~~p~--~l~~l~~~l 265 (450)
T PRK00149 193 FVNALRNNTMEEFKEKYR---SVDVLLIDDIQFLAGKE--RTQEEFFHTFNALHEAGKQIVLTSDRPPK--ELPGLEERL 265 (450)
T ss_pred HHHHHHcCcHHHHHHHHh---cCCEEEEehhhhhcCCH--HHHHHHHHHHHHHHHCCCcEEEECCCCHH--HHHHHHHHH
Confidence 1111111 1122333333 24499999999885432 11123444455555666666666555543 122377999
Q ss_pred hhcce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHH
Q psy14504 196 ERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 196 ~~Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~ 266 (951)
.+||. .+.|.+|+.++|..||+..+.. .++.++++++..++..+.+.+ +.+..++......
T Consensus 266 ~SRl~~gl~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~~~------R~l~~~l~~l~~~ 329 (450)
T PRK00149 266 RSRFEWGLTVDIEPPDLETRIAILKKKAEE----EGIDLPDEVLEFIAKNITSNV------RELEGALNRLIAY 329 (450)
T ss_pred HhHhcCCeeEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHcCcCCCH------HHHHHHHHHHHHH
Confidence 99995 4999999999999999988774 478899999999999887766 5555555555443
No 275
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.43 E-value=2.4e-12 Score=144.12 Aligned_cols=191 Identities=26% Similarity=0.335 Sum_probs=127.3
Q ss_pred CCCC-ccccHHHHHHHHHHHHc----------------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEE
Q psy14504 42 KLDP-VIGRDDEIRRAIQVLQR----------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 104 (951)
Q Consensus 42 ~l~~-lvG~~~~i~~l~~~l~~----------------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~ 104 (951)
.+++ +|||+..++.+...+.. ....++||+||||||||++|+++|+.+ +.+++
T Consensus 68 ~L~~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l----------~~pf~ 137 (412)
T PRK05342 68 HLDQYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARIL----------DVPFA 137 (412)
T ss_pred HHhhHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHh----------CCCce
Confidence 4443 79999998887654421 134789999999999999999999988 77888
Q ss_pred EEehhhhhcCccccccH-HHHHHHHHHHHH---hcCCCeEEEEecccccccCCCC------CCchhHHhhhhhhccCC--
Q psy14504 105 LLDIALLLAGTKYRGEF-EDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKV------EGSIDAGNMLKPELSRG-- 172 (951)
Q Consensus 105 ~~~~~~l~~~~~~~g~~-~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~------~~~~~~~~~L~~~le~~-- 172 (951)
.++++.+.. ..|.|.. +..+..++..+. ....++||||||+|.+.+.+.. .++..+++.|+.+|+..
T Consensus 138 ~id~~~l~~-~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~ 216 (412)
T PRK05342 138 IADATTLTE-AGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVA 216 (412)
T ss_pred ecchhhccc-CCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeE
Confidence 888876542 3466653 333444443211 1234679999999999865221 12235788888888632
Q ss_pred -------------cEEEEEeecc--------h-------------------------------HHHH--------hhhcC
Q psy14504 173 -------------ELHCIGATTL--------N-------------------------------EYRQ--------YIEKD 192 (951)
Q Consensus 173 -------------~i~vI~at~~--------~-------------------------------~~~~--------~~~~~ 192 (951)
..++|.|+|- . .+.+ .+.+.
T Consensus 217 ~v~~~gg~~~~~~~~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~ 296 (412)
T PRK05342 217 SVPPQGGRKHPQQEFIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLI 296 (412)
T ss_pred EeCCCCCcCcCCCCeEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhh
Confidence 1234444443 0 0000 01146
Q ss_pred HHHhhcceE-EEeeCCCHHHHHHHHH----HHHHhhhh---h--cCCCCChHHHHHHHHHh
Q psy14504 193 AAFERRFQK-ILVEEPDIEETISILR----GLQKKYEV---H--HGVEITDPAIVAASELS 243 (951)
Q Consensus 193 ~~l~~Rf~~-i~~~~p~~~er~~il~----~~~~~~~~---~--~~~~i~~~~l~~~~~~s 243 (951)
|.|..|++. +.|.+++.+++..|+. .+.+++.. . ..+.++++++.++++.+
T Consensus 297 PEflgRld~iv~f~~L~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~ 357 (412)
T PRK05342 297 PEFIGRLPVVATLEELDEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKA 357 (412)
T ss_pred HHHhCCCCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhC
Confidence 888889986 8999999999999996 45544331 2 23568999999999875
No 276
>PRK06620 hypothetical protein; Validated
Probab=99.43 E-value=1.8e-12 Score=133.13 Aligned_cols=171 Identities=13% Similarity=0.086 Sum_probs=118.4
Q ss_pred CCCCcc-ccH--HHHHHHHHHHHcCC--C--CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14504 42 KLDPVI-GRD--DEIRRAIQVLQRRS--K--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 114 (951)
Q Consensus 42 ~l~~lv-G~~--~~i~~l~~~l~~~~--~--~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (951)
+|+++| |.. ..+..+.++..... + ++++|+||||||||+|++++++.. +..++ .....
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~----------~~~~~--~~~~~--- 78 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLS----------NAYII--KDIFF--- 78 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhcc----------CCEEc--chhhh---
Confidence 677775 442 34455555443211 2 568999999999999999988765 32221 11000
Q ss_pred ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHH
Q psy14504 115 TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAA 194 (951)
Q Consensus 115 ~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~ 194 (951)
....+ . . ..+|+|||+|.+. .......+..+.+.|+.++|++++.+. .+.+ +.
T Consensus 79 ----------~~~~~---~-~--~d~lliDdi~~~~-------~~~lf~l~N~~~e~g~~ilits~~~p~---~l~l-~~ 131 (214)
T PRK06620 79 ----------NEEIL---E-K--YNAFIIEDIENWQ-------EPALLHIFNIINEKQKYLLLTSSDKSR---NFTL-PD 131 (214)
T ss_pred ----------chhHH---h-c--CCEEEEeccccch-------HHHHHHHHHHHHhcCCEEEEEcCCCcc---ccch-HH
Confidence 00111 1 1 2389999999651 124445555666888888888888877 3456 89
Q ss_pred Hhhcce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHH
Q psy14504 195 FERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 264 (951)
Q Consensus 195 l~~Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 264 (951)
+++||. .+.+.+|+.+++..++++.... .++.++++++++++..+.+.+ +.+..+++...
T Consensus 132 L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~----~~l~l~~ev~~~L~~~~~~d~------r~l~~~l~~l~ 194 (214)
T PRK06620 132 LSSRIKSVLSILLNSPDDELIKILIFKHFSI----SSVTISRQIIDFLLVNLPREY------SKIIEILENIN 194 (214)
T ss_pred HHHHHhCCceEeeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCCH------HHHHHHHHHHH
Confidence 999998 6999999999999999877764 478899999999999998877 67777776643
No 277
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.43 E-value=3.8e-12 Score=138.36 Aligned_cols=234 Identities=18% Similarity=0.170 Sum_probs=150.1
Q ss_pred hhcchHHHHhcC-CCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCC----CC-------
Q psy14504 30 YTIDLTEKARLG-KLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP----NS------- 97 (951)
Q Consensus 30 ~~~~l~e~~rp~-~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~----~~------- 97 (951)
++.+|.++.++. .|+++|||++....|+..+..+..+++||.||+|||||++|+++++.+...... ..
T Consensus 2 ~~~~~~~~~~~~~pf~~ivGq~~~k~al~~~~~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~ 81 (350)
T CHL00081 2 VTNNLKKKERPVFPFTAIVGQEEMKLALILNVIDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPE 81 (350)
T ss_pred cccchhhccCCCCCHHHHhChHHHHHHHHHhccCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChh
Confidence 356778887776 789999999999999988888888999999999999999999999988653211 00
Q ss_pred -c----C--------------CCeEEEEehhhhhcCccccccHHHHHHHHHHHHH--------hcCCCeEEEEecccccc
Q psy14504 98 -L----L--------------SKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS--------NNQKDIIIFIDELHTMI 150 (951)
Q Consensus 98 -~----~--------------~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~--------~~~~~~iL~iDEid~l~ 150 (951)
. + ..++..+..+... ....|... +...+.... ......+|||||++.+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~te--d~l~G~iD--~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL~ 157 (350)
T CHL00081 82 LMSDEVREAIQNGETIETEKIKIPMVDLPLGATE--DRVCGTID--IEKALTEGVKAFEPGLLAKANRGILYVDEVNLLD 157 (350)
T ss_pred hhchhhhhhhcccccccceeccccceecCCCCch--hhccCccc--HHHHhhcCcccccCCeeeecCCCEEEecChHhCC
Confidence 0 0 0011111110000 01111110 111111110 11124599999999995
Q ss_pred cCCCCCCchhHHhhhhhhccCC---------------cEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCC-HHHHH
Q psy14504 151 GTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPD-IEETI 213 (951)
Q Consensus 151 ~~~~~~~~~~~~~~L~~~le~~---------------~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~-~~er~ 213 (951)
+ ..++.|+..|+.+ ++++|++.|+.+ -.+.+++..||.. +.+..|+ .+++.
T Consensus 158 ~--------~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~e----g~l~~~LldRf~l~i~l~~~~~~~~e~ 225 (350)
T CHL00081 158 D--------HLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGMHAEIRTVKDPELRV 225 (350)
T ss_pred H--------HHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCccc----CCCCHHHHHHhCceeecCCCCChHHHH
Confidence 4 5666677776432 456777777654 2589999999996 9999997 58898
Q ss_pred HHHHHHHHh-------------------------hhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhH
Q psy14504 214 SILRGLQKK-------------------------YEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 214 ~il~~~~~~-------------------------~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 268 (951)
+|++..... .+.-..+.+++..+.+++.++...- ..-|+..+.++..|.+.+.
T Consensus 226 ~il~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~--~~s~Ra~i~l~raArA~Aa 303 (350)
T CHL00081 226 KIVEQRTSFDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELD--VDGLRGDIVTNRAAKALAA 303 (350)
T ss_pred HHHHhhhccccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHC--CCCChHHHHHHHHHHHHHH
Confidence 888653210 1112347788888888888876632 2347777888877777666
Q ss_pred Hhh--cCCchHHHHH
Q psy14504 269 IEI--DSKPEIMDKL 281 (951)
Q Consensus 269 ~~~--~~~~~~l~~l 281 (951)
.+. ...|+++...
T Consensus 304 l~GR~~V~pdDv~~~ 318 (350)
T CHL00081 304 FEGRTEVTPKDIFKV 318 (350)
T ss_pred HcCCCCCCHHHHHHH
Confidence 543 4556666543
No 278
>cd07415 MPP_PP2A_PP4_PP6 PP2A, PP4, and PP6 phosphoprotein phosphatases, metallophosphatase domain. PP2A-like family of phosphoprotein phosphatases (PPP's) including PP4 and PP6. PP2A (Protein phosphatase 2A) is a critical regulator of many cellular activities. PP2A comprises about 1% of total cellular proteins. PP2A, together with protein phosphatase 1 (PP1), accounts for more than 90% of all serine/threonine phosphatase activities in most cells and tissues. The PP2A subunit in addition to having a catalytic domain homologous to PP1, has a unique C-terminal tail, containing a motif that is conserved in the catalytic subunits of all PP2A-like phosphatases including PP4 and PP6, and has an important role in PP2A regulation. The PP2A-like family of phosphatases all share a similar heterotrimeric architecture, that includes: a 65kDa scaffolding subunit (A), a 36kDa catalytic subunit (C), and one of 18 regulatory subunits (B). The PPP (phosphoprotein phosphatase) family, to which PP2
Probab=99.43 E-value=4.1e-13 Score=142.91 Aligned_cols=149 Identities=20% Similarity=0.326 Sum_probs=106.1
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecc
Q psy14504 636 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 715 (951)
Q Consensus 636 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~g 715 (951)
.++.+++.++++....-+ +.+.--+.++ .+.+.+|||||++.++.++++..++ ++.+.++++|
T Consensus 14 ~l~~~~~~~l~~~~~~il----~~e~~~~~i~------------~~i~vvGDIHG~~~dL~~ll~~~~~-~~~~~~lfLG 76 (285)
T cd07415 14 LLPESEVKSLCEKAKEIL----VKESNVQRVR------------SPVTVCGDIHGQFYDLLELFRVGGD-PPDTNYLFLG 76 (285)
T ss_pred CCCHHHHHHHHHHHHHHH----HhCCCEEecC------------CCEEEEEeCCCCHHHHHHHHHHcCC-CCCCeEEEEe
Confidence 467778777755544333 3222112221 4568899999999999999998887 4668999999
Q ss_pred cccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhcccCCccccHHHhhCCCCHHHHHHHHhcCCce-EEe
Q psy14504 716 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYY 790 (951)
Q Consensus 716 d~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~ 790 (951)
|++|||+.+++|+.+++.+ +.++.+++||||...+....+-. .+....+-.......+.+|+..||++ +..
T Consensus 77 DyVDRG~~s~evl~ll~~lk~~~p~~v~llrGNHE~~~~~~~ygf~----~e~~~~y~~~~l~~~~~~~f~~lPlaaii~ 152 (285)
T cd07415 77 DYVDRGYYSVETFLLLLALKVRYPDRITLLRGNHESRQITQVYGFY----DECLRKYGNANVWKYCTDLFDYLPLAALID 152 (285)
T ss_pred EECCCCcCHHHHHHHHHHHhhcCCCcEEEEecccchHhhhhhcchh----HHHHHhcCchHHHHHHHHHHHHhHHHhEeC
Confidence 9999999999999998876 45788999999987665433211 11111221112346788999999998 556
Q ss_pred CCEEEEecccCcCCC
Q psy14504 791 KKYLMIHAGVAKQWT 805 (951)
Q Consensus 791 ~~~~~vHAG~~p~~~ 805 (951)
+++++||||++|...
T Consensus 153 ~~i~cvHgGi~p~~~ 167 (285)
T cd07415 153 NQIFCVHGGLSPSID 167 (285)
T ss_pred CeEEEEcCCCCCCcc
Confidence 679999999999754
No 279
>PRK08727 hypothetical protein; Validated
Probab=99.43 E-value=3.2e-12 Score=133.81 Aligned_cols=163 Identities=19% Similarity=0.202 Sum_probs=114.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
.++|+||+|||||+++++++..+...+....++.+.++.... ......+ ....+|+|||+
T Consensus 43 ~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~~~~------------------~~~~~~l--~~~dlLiIDDi 102 (233)
T PRK08727 43 WLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAAGRL------------------RDALEAL--EGRSLVALDGL 102 (233)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhhhhH------------------HHHHHHH--hcCCEEEEeCc
Confidence 599999999999999999999987767677777665433210 0111222 23469999999
Q ss_pred cccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhcc-
Q psy14504 552 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI- 628 (951)
Q Consensus 552 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~- 628 (951)
+.+. +..+..|+.+++.. ......+|+|+|.++..+. .+.|++.+|+
T Consensus 103 ~~l~~~~~~~~~lf~l~n~~----------~~~~~~vI~ts~~~p~~l~--------------------~~~~dL~SRl~ 152 (233)
T PRK08727 103 ESIAGQREDEVALFDFHNRA----------RAAGITLLYTARQMPDGLA--------------------LVLPDLRSRLA 152 (233)
T ss_pred ccccCChHHHHHHHHHHHHH----------HHcCCeEEEECCCChhhhh--------------------hhhHHHHHHHh
Confidence 9885 45566777777641 1123458888988776542 2468899996
Q ss_pred -CcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 629 -DDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 629 -~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
..++.|++++.+++.+|++..... .+ +.++++++++|++.. -||+.+....++++.
T Consensus 153 ~~~~~~l~~~~~e~~~~iL~~~a~~-------~~--l~l~~e~~~~La~~~------~rd~r~~l~~L~~l~ 209 (233)
T PRK08727 153 QCIRIGLPVLDDVARAAVLRERAQR-------RG--LALDEAAIDWLLTHG------ERELAGLVALLDRLD 209 (233)
T ss_pred cCceEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhC------CCCHHHHHHHHHHHH
Confidence 358999999999999996654322 34 789999999999943 277777755566544
No 280
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.43 E-value=8.1e-12 Score=131.05 Aligned_cols=182 Identities=14% Similarity=0.157 Sum_probs=121.1
Q ss_pred hcCCCCCcc-cc-HHHHHHHHHHHH-cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14504 39 RLGKLDPVI-GR-DDEIRRAIQVLQ-RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 115 (951)
Q Consensus 39 rp~~l~~lv-G~-~~~i~~l~~~l~-~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 115 (951)
+|.+|++++ |. +..+..+..+.. .....+++|+||||||||++|+++++.+... +..++.+++.....
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~-------~~~~~~i~~~~~~~-- 83 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYG-------GRNARYLDAASPLL-- 83 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhC-------CCcEEEEehHHhHH--
Confidence 566888887 33 344455555444 2445689999999999999999999987442 55677777655431
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhc----cCCcEEEEEeecchHHHHhhhc
Q psy14504 116 KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----SRGELHCIGATTLNEYRQYIEK 191 (951)
Q Consensus 116 ~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l----e~~~i~vI~at~~~~~~~~~~~ 191 (951)
.+... ....+|+|||+|.+.+ ..+..|..++ +.+..++|.+++..+. ...+
T Consensus 84 ------------~~~~~---~~~~~liiDdi~~l~~--------~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~--~~~l 138 (227)
T PRK08903 84 ------------AFDFD---PEAELYAVDDVERLDD--------AQQIALFNLFNRVRAHGQGALLVAGPAAPL--ALPL 138 (227)
T ss_pred ------------HHhhc---ccCCEEEEeChhhcCc--------hHHHHHHHHHHHHHHcCCcEEEEeCCCCHH--hCCC
Confidence 01111 2244899999998743 1222344444 4555445555554321 2245
Q ss_pred CHHHhhcce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHH
Q psy14504 192 DAAFERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 264 (951)
Q Consensus 192 ~~~l~~Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 264 (951)
.+.+.+||. .+.+++|+.+++..+++.+... .++.++++++..++..+.+.+ ..+..+++...
T Consensus 139 ~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~----~~v~l~~~al~~L~~~~~gn~------~~l~~~l~~l~ 204 (227)
T PRK08903 139 REDLRTRLGWGLVYELKPLSDADKIAALKAAAAE----RGLQLADEVPDYLLTHFRRDM------PSLMALLDALD 204 (227)
T ss_pred CHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhccCCH------HHHHHHHHHHH
Confidence 688998983 5999999999888888876653 578999999999999776655 66666666643
No 281
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.43 E-value=9.2e-12 Score=142.35 Aligned_cols=209 Identities=17% Similarity=0.224 Sum_probs=139.1
Q ss_pred CCccccHHHHHHHHHHHH----cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh-------
Q psy14504 44 DPVIGRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL------- 112 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~----~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~------- 112 (951)
+.++|++++++.+...+. ...+.+++++||||||||++++.+++.+.... .+..++.+++....
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~-----~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIA-----VKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhc-----CCcEEEEEECCcCCCHHHHHH
Confidence 568999999999888764 34567899999999999999999999875422 13556666653221
Q ss_pred ------cC--ccccc-cHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc---CCcEEEEEee
Q psy14504 113 ------AG--TKYRG-EFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGAT 180 (951)
Q Consensus 113 ------~~--~~~~g-~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le---~~~i~vI~at 180 (951)
.+ ....| .....+..+...+...+.+.||+|||+|.+.... ..+....|...++ ..++.+|+++
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~----~~~~l~~l~~~~~~~~~~~v~vI~i~ 180 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE----GNDVLYSLLRAHEEYPGARIGVIGIS 180 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC----CchHHHHHHHhhhccCCCeEEEEEEE
Confidence 00 00112 2333444445555444567899999999997211 1233333333332 3368889998
Q ss_pred cchHHHHhhhcCHHHhhcce--EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHH
Q psy14504 181 TLNEYRQYIEKDAAFERRFQ--KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAID 258 (951)
Q Consensus 181 ~~~~~~~~~~~~~~l~~Rf~--~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ 258 (951)
|...+.. .+++.+.+||. .|.|++++.++...|++..+..- .....+++++++.+++.+.+.. +..+.++.
T Consensus 181 ~~~~~~~--~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~--~~~~~~~~~~l~~i~~~~~~~~---Gd~r~a~~ 253 (394)
T PRK00411 181 SDLTFLY--ILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEG--FYPGVVDDEVLDLIADLTAREH---GDARVAID 253 (394)
T ss_pred CCcchhh--hcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhh--cccCCCCHhHHHHHHHHHHHhc---CcHHHHHH
Confidence 8765433 36888989885 49999999999999998766431 1234578999999988885432 23477788
Q ss_pred HHHHHHHHhH
Q psy14504 259 LIDEAAAKIK 268 (951)
Q Consensus 259 ll~~a~~~~~ 268 (951)
++..|+..+.
T Consensus 254 ll~~a~~~a~ 263 (394)
T PRK00411 254 LLRRAGLIAE 263 (394)
T ss_pred HHHHHHHHHH
Confidence 8877765544
No 282
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.42 E-value=2.2e-12 Score=135.52 Aligned_cols=184 Identities=13% Similarity=0.181 Sum_probs=124.8
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCC
Q psy14504 444 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP 523 (951)
Q Consensus 444 Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 523 (951)
+...+++.+...+... ...+++|+||||||||++|+++++.+...+.+++.++++.+.... .
T Consensus 21 ~~~~~~~~l~~~~~~~---------~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--~------- 82 (226)
T TIGR03420 21 GNAELLAALRQLAAGK---------GDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--P------- 82 (226)
T ss_pred CcHHHHHHHHHHHhcC---------CCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--H-------
Confidence 3555666666654311 123799999999999999999999987666788888888765421 0
Q ss_pred CCccccccchhHHHHHhCCCeEEEEccccccCHH--HHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhc
Q psy14504 524 GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSD--VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 601 (951)
Q Consensus 524 ~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~--~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~ 601 (951)
.+...+. ..++|+|||++.++.. .++.|+.+++... ..+..+|+|++.....+
T Consensus 83 ---------~~~~~~~--~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~----------~~~~~iIits~~~~~~~---- 137 (226)
T TIGR03420 83 ---------EVLEGLE--QADLVCLDDVEAIAGQPEWQEALFHLYNRVR----------EAGGRLLIAGRAAPAQL---- 137 (226)
T ss_pred ---------HHHhhcc--cCCEEEEeChhhhcCChHHHHHHHHHHHHHH----------HcCCeEEEECCCChHHC----
Confidence 1111122 2369999999999864 3888888876411 11235777887654321
Q ss_pred cccHHHHHHHHHHHHHhccChhHhhccC--cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcc
Q psy14504 602 KGDKEIIKLAVMNEVKIYFRPEFINRID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGF 679 (951)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~f~p~l~~R~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~ 679 (951)
....+.+.+|+. ..|.++|++.+++..++...+. ..+ +.++++++++|+. +
T Consensus 138 ----------------~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~-------~~~--~~~~~~~l~~L~~--~ 190 (226)
T TIGR03420 138 ----------------PLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAA-------RRG--LQLPDEVADYLLR--H 190 (226)
T ss_pred ----------------CcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHH--h
Confidence 112267888874 5899999999999988654332 223 6799999999998 3
Q ss_pred cccccccccccchHHHHHH
Q psy14504 680 DLIYGARDVHGCKKSLSIL 698 (951)
Q Consensus 680 ~~~~g~~dlhg~~~~l~~~ 698 (951)
|..+++.+...++.+..+
T Consensus 191 -~~gn~r~L~~~l~~~~~~ 208 (226)
T TIGR03420 191 -GSRDMGSLMALLDALDRA 208 (226)
T ss_pred -ccCCHHHHHHHHHHHHHH
Confidence 666778887775555543
No 283
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.41 E-value=6.3e-12 Score=143.45 Aligned_cols=201 Identities=16% Similarity=0.260 Sum_probs=127.2
Q ss_pred CCCCcc-ccHH--HHHHHHHHHHcCC-CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccc
Q psy14504 42 KLDPVI-GRDD--EIRRAIQVLQRRS-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKY 117 (951)
Q Consensus 42 ~l~~lv-G~~~--~i~~l~~~l~~~~-~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 117 (951)
+|+++| |... ....+..+...+. .++++|+||||+|||+|++++|+.+.... | +..++.++...+.. ..
T Consensus 103 tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~-~----~~~v~yi~~~~f~~--~~ 175 (440)
T PRK14088 103 TFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-P----DLRVMYITSEKFLN--DL 175 (440)
T ss_pred cccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhC-C----CCeEEEEEHHHHHH--HH
Confidence 788887 6443 3344444444332 35799999999999999999999875421 1 45777777665431 11
Q ss_pred cccHH-HHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHHh
Q psy14504 118 RGEFE-DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFE 196 (951)
Q Consensus 118 ~g~~~-~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l~ 196 (951)
..... ..+..+..... ..+.+|+|||++.+.+.. ....+....+....+.+..++|++...+. .+..+.+.+.
T Consensus 176 ~~~~~~~~~~~f~~~~~--~~~dvLlIDDi~~l~~~~--~~q~elf~~~n~l~~~~k~iIitsd~~p~--~l~~l~~rL~ 249 (440)
T PRK14088 176 VDSMKEGKLNEFREKYR--KKVDVLLIDDVQFLIGKT--GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRLV 249 (440)
T ss_pred HHHHhcccHHHHHHHHH--hcCCEEEEechhhhcCcH--HHHHHHHHHHHHHHHcCCeEEEECCCCHH--HHHHHHHHHh
Confidence 10000 01122222222 124599999999885421 01123444455555666655555544443 2334678999
Q ss_pred hcce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q psy14504 197 RRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 197 ~Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 265 (951)
+||. .+.|.+|+.++|..|++..+.. .++.++++++..++..+.+.+ +.+..++....+
T Consensus 250 SR~~~gl~v~i~~pd~e~r~~IL~~~~~~----~~~~l~~ev~~~Ia~~~~~~~------R~L~g~l~~l~~ 311 (440)
T PRK14088 250 SRFQMGLVAKLEPPDEETRKKIARKMLEI----EHGELPEEVLNFVAENVDDNL------RRLRGAIIKLLV 311 (440)
T ss_pred hHHhcCceEeeCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHhccccCH------HHHHHHHHHHHH
Confidence 9997 4899999999999999988764 468899999999999887765 555555554443
No 284
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=1.1e-12 Score=149.42 Aligned_cols=164 Identities=25% Similarity=0.372 Sum_probs=119.1
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCC----CCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSD----AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 515 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~----~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 515 (951)
.+|.|.+++++.+.+.+...+...+. ..-|. .++|+||||||||.|||++|.+. +.||.++..++|.+.
T Consensus 150 ~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPk-GvlLvGpPGTGKTLLAkAvAgEA---~VPFf~iSGS~FVem--- 222 (596)
T COG0465 150 ADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPK-GVLLVGPPGTGKTLLAKAVAGEA---GVPFFSISGSDFVEM--- 222 (596)
T ss_pred hhhcCcHHHHHHHHHHHHHHhCchhhHhccccccc-ceeEecCCCCCcHHHHHHHhccc---CCCceeccchhhhhh---
Confidence 45678888888888887654422111 12233 58999999999999999999887 889999999998875
Q ss_pred hcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhcceeecCCCeEeec
Q psy14504 516 SRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRTINF 581 (951)
Q Consensus 516 ~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~~ 581 (951)
++| +|.+..+.++...+++.+||+||||+|.... ...|+||..||.-. ..
T Consensus 223 --fVG-----vGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~---------~~ 286 (596)
T COG0465 223 --FVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFG---------GN 286 (596)
T ss_pred --hcC-----CCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCC---------CC
Confidence 222 2334457788888888889999999997653 46788888887410 22
Q ss_pred CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHH
Q psy14504 582 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 582 ~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
..+++|++||.+.- +.|+|+ +|||..|..+.++-...++|++-.+
T Consensus 287 ~gviviaaTNRpdV------------------------lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~ 333 (596)
T COG0465 287 EGVIVIAATNRPDV------------------------LDPALLRPGRFDRQILVELPDIKGREQILKVHA 333 (596)
T ss_pred CceEEEecCCCccc------------------------chHhhcCCCCcceeeecCCcchhhHHHHHHHHh
Confidence 45778888886431 234444 7999999999999888888866333
No 285
>KOG0743|consensus
Probab=99.41 E-value=1.5e-12 Score=140.83 Aligned_cols=157 Identities=18% Similarity=0.217 Sum_probs=115.0
Q ss_pred hcCCCCCccccHHHHHHHH----HHHH---------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAI----QVLQ---------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~----~~l~---------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
+|.+|+-++-..+..++++ .++. ++-+++-|||||||||||+++.|+|+.| +..++-
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L----------~ydIyd 265 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYL----------NYDIYD 265 (457)
T ss_pred CCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhc----------CCceEE
Confidence 6788998887665554444 4443 3446789999999999999999999999 889998
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC--C---Cch-----hHHhhhhhhcc-----
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV--E---GSI-----DAGNMLKPELS----- 170 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~--~---~~~-----~~~~~L~~~le----- 170 (951)
++++... ...+ ++.++.... ..+||+|++||+-+..+.. . +.+ -...-|+.++.
T Consensus 266 LeLt~v~------~n~d--Lr~LL~~t~---~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSs 334 (457)
T KOG0743|consen 266 LELTEVK------LDSD--LRHLLLATP---NKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSS 334 (457)
T ss_pred eeecccc------CcHH--HHHHHHhCC---CCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhcccccc
Confidence 8875543 2222 788877753 5679999999987542211 1 111 11223555553
Q ss_pred -CCcEEEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHH
Q psy14504 171 -RGELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQK 221 (951)
Q Consensus 171 -~~~i~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~ 221 (951)
.+.-++|.|||..+ .+||||.| |++. |++...+.++-..++..++.
T Consensus 335 cg~ERIivFTTNh~E-----kLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~ 384 (457)
T KOG0743|consen 335 CGDERIIVFTTNHKE-----KLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLG 384 (457)
T ss_pred CCCceEEEEecCChh-----hcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcC
Confidence 24678899999999 99999999 9997 99999999988888776654
No 286
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.40 E-value=1.4e-11 Score=140.70 Aligned_cols=201 Identities=14% Similarity=0.307 Sum_probs=126.2
Q ss_pred CCCCc-cccHHH--HHHHHHHHHcC--CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14504 42 KLDPV-IGRDDE--IRRAIQVLQRR--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 116 (951)
Q Consensus 42 ~l~~l-vG~~~~--i~~l~~~l~~~--~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 116 (951)
+|+++ +|.+.. ...+..+...+ ..++++|+||||||||+|++++++++.... | +..++.+++..+.. .
T Consensus 108 tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~-~----~~~v~yi~~~~~~~--~ 180 (405)
T TIGR00362 108 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENN-P----NAKVVYVSSEKFTN--D 180 (405)
T ss_pred cccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhC-C----CCcEEEEEHHHHHH--H
Confidence 67774 475543 33333343332 234689999999999999999999986431 1 45677777655431 1
Q ss_pred ccccHH-HHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHH
Q psy14504 117 YRGEFE-DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAF 195 (951)
Q Consensus 117 ~~g~~~-~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l 195 (951)
+..... ..+..+...... ..+|+|||++.+.+.. .........+....+.+..++|++...+. ....+++.+
T Consensus 181 ~~~~~~~~~~~~~~~~~~~---~dlLiiDDi~~l~~~~--~~~~~l~~~~n~~~~~~~~iiits~~~p~--~l~~l~~~l 253 (405)
T TIGR00362 181 FVNALRNNKMEEFKEKYRS---VDLLLIDDIQFLAGKE--RTQEEFFHTFNALHENGKQIVLTSDRPPK--ELPGLEERL 253 (405)
T ss_pred HHHHHHcCCHHHHHHHHHh---CCEEEEehhhhhcCCH--HHHHHHHHHHHHHHHCCCCEEEecCCCHH--HHhhhhhhh
Confidence 111110 012222233332 3399999999885432 01122334444445566655555554443 233468899
Q ss_pred hhcce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHH
Q psy14504 196 ERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 196 ~~Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~ 266 (951)
.+||. .+.|++|+.++|..||+..++. .++.++++++..++....+.+ +.+...+...++.
T Consensus 254 ~SRl~~g~~v~i~~pd~~~r~~il~~~~~~----~~~~l~~e~l~~ia~~~~~~~------r~l~~~l~~l~~~ 317 (405)
T TIGR00362 254 RSRFEWGLVVDIEPPDLETRLAILQKKAEE----EGLELPDEVLEFIAKNIRSNV------RELEGALNRLLAY 317 (405)
T ss_pred hhhccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH------HHHHHHHHHHHHH
Confidence 99996 3999999999999999988875 478899999999998877655 5555555544433
No 287
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.40 E-value=6.6e-12 Score=139.37 Aligned_cols=183 Identities=20% Similarity=0.361 Sum_probs=123.1
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC--ceEEeccccccchhchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSEFIEKHSISR 517 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~ 517 (951)
+.++|++.+++.+..++.... .++++|+||||||||++|+++++.+++.+. .++.++.++.......
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~~---------~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~-- 85 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEKN---------MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERGIDVI-- 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCCC---------CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccchHHH--
Confidence 347799999999998886322 125899999999999999999999865442 2333332221110000
Q ss_pred ccCCCCCCccccccchhHHHHHh-----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCC
Q psy14504 518 LIGAPPGYIGYEEGGYLTEIVRR-----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 592 (951)
Q Consensus 518 l~g~~~~~~g~~~~~~l~~~~~~-----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 592 (951)
...+...... .+..+|+|||+|.++...++.|+..++. ...++.+|+++|.
T Consensus 86 -------------~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~-----------~~~~~~lIl~~~~ 141 (319)
T PRK00440 86 -------------RNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEM-----------YSQNTRFILSCNY 141 (319)
T ss_pred -------------HHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhc-----------CCCCCeEEEEeCC
Confidence 0111222221 2356999999999999999999999986 2345678888875
Q ss_pred CchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHH
Q psy14504 593 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 672 (951)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 672 (951)
.. .+.+++.+|+ .++.|+|++.+++..++...+. ..+ +.+++++++
T Consensus 142 ~~------------------------~l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~-------~~~--~~i~~~al~ 187 (319)
T PRK00440 142 SS------------------------KIIDPIQSRC-AVFRFSPLKKEAVAERLRYIAE-------NEG--IEITDDALE 187 (319)
T ss_pred cc------------------------ccchhHHHHh-heeeeCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHH
Confidence 32 2345677888 5899999999999888665443 345 678999999
Q ss_pred HHHHhcccccccccccccchHHHHH
Q psy14504 673 KISNIGFDLIYGARDVHGCKKSLSI 697 (951)
Q Consensus 673 ~L~~~~~~~~~g~~dlhg~~~~l~~ 697 (951)
+|+... -||+......++.
T Consensus 188 ~l~~~~------~gd~r~~~~~l~~ 206 (319)
T PRK00440 188 AIYYVS------EGDMRKAINALQA 206 (319)
T ss_pred HHHHHc------CCCHHHHHHHHHH
Confidence 998843 2455444444443
No 288
>KOG0737|consensus
Probab=99.40 E-value=7.5e-13 Score=139.07 Aligned_cols=138 Identities=19% Similarity=0.305 Sum_probs=102.0
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCcccccc--chhHHHHHhCCCeEE
Q psy14504 469 PYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLI 546 (951)
Q Consensus 469 p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl 546 (951)
|...+||+||||||||.+|+++|+.. +.+|+.+.++.++++ +-|+.++ +.++....+-.|+||
T Consensus 126 p~kGiLL~GPpG~GKTmlAKA~Akea---ga~fInv~~s~lt~K------------WfgE~eKlv~AvFslAsKl~P~iI 190 (386)
T KOG0737|consen 126 PPKGILLYGPPGTGKTMLAKAIAKEA---GANFINVSVSNLTSK------------WFGEAQKLVKAVFSLASKLQPSII 190 (386)
T ss_pred CCccceecCCCCchHHHHHHHHHHHc---CCCcceeeccccchh------------hHHHHHHHHHHHHhhhhhcCccee
Confidence 33479999999999999999999998 889999999988874 3344443 445555667778999
Q ss_pred EEccccccCH-----------HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHH
Q psy14504 547 LLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNE 615 (951)
Q Consensus 547 ~iDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~ 615 (951)
||||+|++-. ..-+.+....| |-.++. ...++++.+||.+.+.
T Consensus 191 FIDEvds~L~~R~s~dHEa~a~mK~eFM~~WD-Gl~s~~------~~rVlVlgATNRP~Dl------------------- 244 (386)
T KOG0737|consen 191 FIDEVDSFLGQRRSTDHEATAMMKNEFMALWD-GLSSKD------SERVLVLGATNRPFDL------------------- 244 (386)
T ss_pred ehhhHHHHHhhcccchHHHHHHHHHHHHHHhc-cccCCC------CceEEEEeCCCCCccH-------------------
Confidence 9999997641 22344444444 333322 2246778899988763
Q ss_pred HHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 616 VKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 616 ~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
...+++|++..+.+.-++.++..+|++..|+.
T Consensus 245 -----DeAiiRR~p~rf~V~lP~~~qR~kILkviLk~ 276 (386)
T KOG0737|consen 245 -----DEAIIRRLPRRFHVGLPDAEQRRKILKVILKK 276 (386)
T ss_pred -----HHHHHHhCcceeeeCCCchhhHHHHHHHHhcc
Confidence 46788999999999999999999997766644
No 289
>PTZ00480 serine/threonine-protein phosphatase; Provisional
Probab=99.40 E-value=1e-12 Score=140.69 Aligned_cols=148 Identities=22% Similarity=0.329 Sum_probs=104.8
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecc
Q psy14504 636 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 715 (951)
Q Consensus 636 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~g 715 (951)
.++.+++.+++.....- +..+..-+.+ ..+.+.+|||||++.++.+++...+| ++.+.++|+|
T Consensus 31 ~l~~~~i~~l~~~~~~i----l~~ep~ll~i------------~~~i~vvGDIHG~~~dL~~l~~~~g~-~~~~~ylfLG 93 (320)
T PTZ00480 31 NLTEAEVRGLCIKARDI----FISQPILLEL------------EAPLKICGDVHGQYFDLLRLFEYGGY-PPESNYLFLG 93 (320)
T ss_pred CCCHHHHHHHHHHHHHH----HHhCCceEec------------CCCeEEEeecccCHHHHHHHHHhcCC-CCcceEEEec
Confidence 46778888775544433 2322211111 24567799999999999999998887 4568899999
Q ss_pred cccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhcccCCccccHHHhhCCCCHHHHHHHHhcCCce-EEe
Q psy14504 716 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYY 790 (951)
Q Consensus 716 d~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~ 790 (951)
|++|||+.+++|+.+++.+ +.++++++||||...+....+-.. .............+...+..||++ +..
T Consensus 94 DyVDRG~~s~evl~ll~~lki~~p~~v~llRGNHE~~~~~~~ygF~~-----e~~~~y~~~l~~~~~~~F~~LPlaAiI~ 168 (320)
T PTZ00480 94 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYD-----ECKRRYTIKLWKTFTDCFNCLPVAALID 168 (320)
T ss_pred eecCCCCCcHHHHHHHHHhcccCCCceEEEecccchhhhhhhcchHH-----HHHhhcCHHHHHHHHHHHHhccHhheec
Confidence 9999999999999999876 457899999999987654322110 000001111235677888999998 667
Q ss_pred CCEEEEecccCcCCC
Q psy14504 791 KKYLMIHAGVAKQWT 805 (951)
Q Consensus 791 ~~~~~vHAG~~p~~~ 805 (951)
+++++||||++|...
T Consensus 169 ~~i~cvHGGI~p~~~ 183 (320)
T PTZ00480 169 EKILCMHGGLSPELS 183 (320)
T ss_pred CcEEEEcCCcCcccC
Confidence 789999999999753
No 290
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.40 E-value=3.1e-12 Score=139.07 Aligned_cols=176 Identities=18% Similarity=0.278 Sum_probs=111.9
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC----CceEEecc--cccc---
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE----ESIIRIDM--SEFI--- 510 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~----~~~~~~~~--~~~~--- 510 (951)
..|+||++++..+...+.... .+.+||.||+|||||++|+++++.+.... .+|. .+. ++..
T Consensus 17 ~~ivGq~~~k~al~~~~~~p~---------~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~-~~p~~p~~~~~~ 86 (350)
T CHL00081 17 TAIVGQEEMKLALILNVIDPK---------IGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFN-SHPSDPELMSDE 86 (350)
T ss_pred HHHhChHHHHHHHHHhccCCC---------CCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCC-CCCCChhhhchh
Confidence 468899999999888876433 23799999999999999999999884211 1221 000 0000
Q ss_pred ------------------------chhchhcccCCCC---CCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHH
Q psy14504 511 ------------------------EKHSISRLIGAPP---GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILL 563 (951)
Q Consensus 511 ------------------------~~~~~~~l~g~~~---~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll 563 (951)
......+++|.-. ...+ .......+.+..+.+++||+||++.+++.+|+.|+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~-g~~~~~~GlL~~A~~GiL~lDEInrL~~~~Q~~LL 165 (350)
T CHL00081 87 VREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTE-GVKAFEPGLLAKANRGILYVDEVNLLDDHLVDILL 165 (350)
T ss_pred hhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhc-CcccccCCeeeecCCCEEEecChHhCCHHHHHHHH
Confidence 0011112222100 0000 00000122344666899999999999999999999
Q ss_pred HHhhcceeec-CCCeEeec-CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCC-hh
Q psy14504 564 QILDDGRLTD-NRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN-RK 640 (951)
Q Consensus 564 ~~le~g~~~~-~~g~~~~~-~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~-~~ 640 (951)
+.|++|..+- ..|.+... .++++|+|.|.. .+.|++++++||...+.+..++ .+
T Consensus 166 eam~e~~~~ier~G~s~~~p~rfiviaT~np~-----------------------eg~l~~~LldRf~l~i~l~~~~~~~ 222 (350)
T CHL00081 166 DSAASGWNTVEREGISIRHPARFVLVGSGNPE-----------------------EGELRPQLLDRFGMHAEIRTVKDPE 222 (350)
T ss_pred HHHHhCCeEEeeCCeeeecCCCEEEEeccCcc-----------------------cCCCCHHHHHHhCceeecCCCCChH
Confidence 9999876542 23444333 355666666642 2358999999999999999987 47
Q ss_pred hHHHHHHHH
Q psy14504 641 NILSIANIQ 649 (951)
Q Consensus 641 ~~~~i~~~~ 649 (951)
+..+|++..
T Consensus 223 ~e~~il~~~ 231 (350)
T CHL00081 223 LRVKIVEQR 231 (350)
T ss_pred HHHHHHHhh
Confidence 777787764
No 291
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.40 E-value=6.7e-12 Score=136.42 Aligned_cols=176 Identities=18% Similarity=0.283 Sum_probs=109.2
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC----CC--ceEEecc-ccc---
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN----EE--SIIRIDM-SEF--- 509 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~----~~--~~~~~~~-~~~--- 509 (951)
..|+||+.+++.+..++.... .+++||.||||||||++|++++..+..- +. .+..+.+ .+.
T Consensus 8 ~~i~Gq~~~~~~l~~~~~~~~---------~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~ 78 (334)
T PRK13407 8 SAIVGQEEMKQAMVLTAIDPG---------IGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHV 78 (334)
T ss_pred HHhCCHHHHHHHHHHHHhccC---------CCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccc
Confidence 457899999998876543211 2379999999999999999999998310 00 1111110 000
Q ss_pred cc---------------hhchhcccCCCCC----CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcce
Q psy14504 510 IE---------------KHSISRLIGAPPG----YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGR 570 (951)
Q Consensus 510 ~~---------------~~~~~~l~g~~~~----~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~ 570 (951)
.. ..+..+++|...= ..|. ...-.+.+..+.+++||+||++.+++.+|+.|++.|++|.
T Consensus 79 ~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~--~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee~~ 156 (334)
T PRK13407 79 SSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGE--KAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQSGE 156 (334)
T ss_pred cCCcccccCCccccCCCCCCcceeecchhhhhhhhcCC--eeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHcCC
Confidence 00 0111223331000 0000 0011123345667899999999999999999999999987
Q ss_pred ee-cCCCeEeec-CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCCh-hhHHHHHH
Q psy14504 571 LT-DNRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KNILSIAN 647 (951)
Q Consensus 571 ~~-~~~g~~~~~-~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~-~~~~~i~~ 647 (951)
++ ...|..... ...++|+|+|... +.+++.+++||...|.+.++.. ++..+|+.
T Consensus 157 v~v~r~G~~~~~p~rfiviAt~NP~e-----------------------~~l~~aLldRF~~~v~v~~~~~~~e~~~il~ 213 (334)
T PRK13407 157 NVVEREGLSIRHPARFVLVGSGNPEE-----------------------GELRPQLLDRFGLSVEVRSPRDVETRVEVIR 213 (334)
T ss_pred eEEEECCeEEecCCCEEEEecCCccc-----------------------CCCCHHHHhhcceEEEcCCCCcHHHHHHHHH
Confidence 54 223444433 4566677767421 2478899999988888888777 77677776
Q ss_pred HH
Q psy14504 648 IQ 649 (951)
Q Consensus 648 ~~ 649 (951)
..
T Consensus 214 ~~ 215 (334)
T PRK13407 214 RR 215 (334)
T ss_pred Hh
Confidence 54
No 292
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=1.2e-11 Score=142.29 Aligned_cols=199 Identities=13% Similarity=0.202 Sum_probs=125.5
Q ss_pred CCCCcc-ccHHH--HHHHHHHHHcC--CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14504 42 KLDPVI-GRDDE--IRRAIQVLQRR--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 116 (951)
Q Consensus 42 ~l~~lv-G~~~~--i~~l~~~l~~~--~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 116 (951)
+|+++| |.... ...+..++... ..+.++|+|++|+|||+|++++|+.+.... .+..++.++...+.. .
T Consensus 286 TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~-----~g~~V~Yitaeef~~--e 358 (617)
T PRK14086 286 TFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLY-----PGTRVRYVSSEEFTN--E 358 (617)
T ss_pred CHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHHH--H
Confidence 788887 44432 33444444432 224589999999999999999999875321 156777777766541 1
Q ss_pred ccccHHH-HHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHH
Q psy14504 117 YRGEFED-RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAF 195 (951)
Q Consensus 117 ~~g~~~~-~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l 195 (951)
+...... .+..+.+... ..-+|+|||++.+.... .....+.+.+..+.++++-+|| |++... ..+..+++.|
T Consensus 359 l~~al~~~~~~~f~~~y~---~~DLLlIDDIq~l~gke--~tqeeLF~l~N~l~e~gk~III-TSd~~P-~eL~~l~~rL 431 (617)
T PRK14086 359 FINSIRDGKGDSFRRRYR---EMDILLVDDIQFLEDKE--STQEEFFHTFNTLHNANKQIVL-SSDRPP-KQLVTLEDRL 431 (617)
T ss_pred HHHHHHhccHHHHHHHhh---cCCEEEEehhccccCCH--HHHHHHHHHHHHHHhcCCCEEE-ecCCCh-HhhhhccHHH
Confidence 2111111 1112222222 23499999999885432 1113344555555565554444 444432 1233578999
Q ss_pred hhcce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHH
Q psy14504 196 ERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 264 (951)
Q Consensus 196 ~~Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 264 (951)
.+||. .+.|..|+.+.|..||+..+.. .++.++++++.+++....+.+ +.+..+|....
T Consensus 432 ~SRf~~GLvv~I~~PD~EtR~aIL~kka~~----r~l~l~~eVi~yLa~r~~rnv------R~LegaL~rL~ 493 (617)
T PRK14086 432 RNRFEWGLITDVQPPELETRIAILRKKAVQ----EQLNAPPEVLEFIASRISRNI------RELEGALIRVT 493 (617)
T ss_pred HhhhhcCceEEcCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhccCCH------HHHHHHHHHHH
Confidence 99996 3899999999999999987764 478999999999999876655 44444444443
No 293
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=2.6e-12 Score=139.50 Aligned_cols=166 Identities=19% Similarity=0.335 Sum_probs=113.6
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc-------eEEeccccccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES-------IIRIDMSEFIE 511 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~-------~~~~~~~~~~~ 511 (951)
.+.|+||+.+++.+...+...+.. +.+||+||+|+||+++|.++|+.+++.... +...+-+++.-
T Consensus 3 f~~iiGq~~~~~~L~~~i~~~rl~--------ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~ 74 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQNRIA--------PAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLW 74 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCC--------ceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEE
Confidence 467899999999999999865432 379999999999999999999999654311 00111111110
Q ss_pred hhchhcccCC---------------CCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceee
Q psy14504 512 KHSISRLIGA---------------PPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLT 572 (951)
Q Consensus 512 ~~~~~~l~g~---------------~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~ 572 (951)
-......-|. ..+.++-++.+.+...+. .+.+.|++||++|+++...+|+||+.||+
T Consensus 75 i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE---- 150 (314)
T PRK07399 75 VEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE---- 150 (314)
T ss_pred EeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC----
Confidence 0000000010 011222223344444443 34579999999999999999999999997
Q ss_pred cCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHH
Q psy14504 573 DNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 649 (951)
Q Consensus 573 ~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~ 649 (951)
+. +++||+.|+... .+.|.+.+|| .++.|++++.+++.+++...
T Consensus 151 -------Pp-~~~fILi~~~~~------------------------~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~ 194 (314)
T PRK07399 151 -------PG-NGTLILIAPSPE------------------------SLLPTIVSRC-QIIPFYRLSDEQLEQVLKRL 194 (314)
T ss_pred -------CC-CCeEEEEECChH------------------------hCcHHHHhhc-eEEecCCCCHHHHHHHHHHh
Confidence 44 677888887432 3568899999 79999999999999886643
No 294
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.39 E-value=5.9e-12 Score=132.01 Aligned_cols=149 Identities=12% Similarity=0.119 Sum_probs=101.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||||||||++++++++.+...+..+.++.+...... ...+.+.+.. ..+|+|||+
T Consensus 47 ~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~~--~dlliiDdi 106 (235)
T PRK08084 47 YIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF------------------VPEVLEGMEQ--LSLVCIDNI 106 (235)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh------------------hHHHHHHhhh--CCEEEEeCh
Confidence 69999999999999999999988655555666665442210 0012222222 259999999
Q ss_pred cccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccC
Q psy14504 552 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID 629 (951)
Q Consensus 552 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~ 629 (951)
+.+. +..+..|+.+++... ...+..+|+||+.++..+. .+.|+|.+|+.
T Consensus 107 ~~~~~~~~~~~~lf~l~n~~~---------e~g~~~li~ts~~~p~~l~--------------------~~~~~L~SRl~ 157 (235)
T PRK08084 107 ECIAGDELWEMAIFDLYNRIL---------ESGRTRLLITGDRPPRQLN--------------------LGLPDLASRLD 157 (235)
T ss_pred hhhcCCHHHHHHHHHHHHHHH---------HcCCCeEEEeCCCChHHcC--------------------cccHHHHHHHh
Confidence 9885 444555555554310 1123357788887765432 24689999995
Q ss_pred --cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhc
Q psy14504 630 --DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 630 --~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
.++.+.|++.+++.+++++.. ...+ +.++++++++|+...
T Consensus 158 ~g~~~~l~~~~~~~~~~~l~~~a-------~~~~--~~l~~~v~~~L~~~~ 199 (235)
T PRK08084 158 WGQIYKLQPLSDEEKLQALQLRA-------RLRG--FELPEDVGRFLLKRL 199 (235)
T ss_pred CCceeeecCCCHHHHHHHHHHHH-------HHcC--CCCCHHHHHHHHHhh
Confidence 599999999999999965433 3334 889999999999843
No 295
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.39 E-value=6e-12 Score=136.79 Aligned_cols=215 Identities=16% Similarity=0.194 Sum_probs=128.1
Q ss_pred cCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCC----CCCC---cCC------------
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGE----VPNS---LLS------------ 100 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~----~~~~---~~~------------ 100 (951)
|..|++++|++..++.+...+-.....|+||.|+|||||||+|+++++.+..-. +|.. ..+
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~~~~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 83 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTAIDPGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEWAHVSSTTM 83 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHHhccCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCcccccccCCcc
Confidence 667899999999999888654444457999999999999999999999873210 0000 000
Q ss_pred ----CeEEEEehhhhhcCcccccc--HHHHHH---HHHHH-HHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc
Q psy14504 101 ----KKILLLDIALLLAGTKYRGE--FEDRLK---KILKE-ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS 170 (951)
Q Consensus 101 ----~~~~~~~~~~l~~~~~~~g~--~~~~l~---~~~~~-a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le 170 (951)
.++..+..+.. .....|. ++..+. ..+.. ........+||+||++.+. ...++.|+..|+
T Consensus 84 ~~~~~p~~~~p~~~t--~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~--------~~~q~~Lle~me 153 (334)
T PRK13407 84 IERPTPVVDLPLGVT--EDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLE--------DHIVDLLLDVAQ 153 (334)
T ss_pred cccCCccccCCCCCC--cceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCC--------HHHHHHHHHHHH
Confidence 01111110000 0001111 010000 00100 0001123489999999984 366777888876
Q ss_pred CC---------------cEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCH-HHHHHHHHHHHHh-----------
Q psy14504 171 RG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDI-EETISILRGLQKK----------- 222 (951)
Q Consensus 171 ~~---------------~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~-~er~~il~~~~~~----------- 222 (951)
.+ .+++|+++|+.+ ..+.+++..||.. +.+++|+. +++.+|++.....
T Consensus 154 e~~v~v~r~G~~~~~p~rfiviAt~NP~e----~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~ 229 (334)
T PRK13407 154 SGENVVEREGLSIRHPARFVLVGSGNPEE----GELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKW 229 (334)
T ss_pred cCCeEEEECCeEEecCCCEEEEecCCccc----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhccc
Confidence 44 367788888754 2578999999986 88988866 8888888653211
Q ss_pred --------------hhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhHHh
Q psy14504 223 --------------YEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIE 270 (951)
Q Consensus 223 --------------~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~ 270 (951)
...-..+.++++.+.+++.++...-. .-|+..+.++..|.+.+..+
T Consensus 230 ~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~--~s~Ra~i~l~~aA~a~A~l~ 289 (334)
T PRK13407 230 GAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGS--DGLRGELTLLRAARALAAFE 289 (334)
T ss_pred cccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCC--CCchHHHHHHHHHHHHHHHc
Confidence 01123366778888887777655332 23555555666666555543
No 296
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.38 E-value=4.4e-12 Score=154.51 Aligned_cols=181 Identities=18% Similarity=0.282 Sum_probs=126.9
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC-------CCceEEeccccccch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-------EESIIRIDMSEFIEK 512 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~-------~~~~~~~~~~~~~~~ 512 (951)
+.++|+++.+..+...+.+.. ..+++|+||||||||++|+++|+.+... +..+..++++.+...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~---------~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~ 252 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRK---------KNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAG 252 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCC---------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhh
Confidence 468999999998887775432 2368999999999999999999987432 334666666544321
Q ss_pred hchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC---------HHHHHHHHHHhhcceeecCCCeEeec
Q psy14504 513 HSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN---------SDVFNILLQILDDGRLTDNRGRTINF 581 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~---------~~~~~~Ll~~le~g~~~~~~g~~~~~ 581 (951)
..|.|.-+. +.+.+.+....++||||||+|.+. .++++.|...|++|.
T Consensus 253 ----------~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~~g~----------- 311 (731)
T TIGR02639 253 ----------TKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALSSGK----------- 311 (731)
T ss_pred ----------ccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHhCCC-----------
Confidence 124443332 233333444567999999999774 356888999988754
Q ss_pred CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcC
Q psy14504 582 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMN 661 (951)
Q Consensus 582 ~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~ 661 (951)
..+|.+||... +.. .-..++.|.+||. .|.+.+++.++..+|++....++... +
T Consensus 312 --i~~IgaTt~~e--~~~-----------------~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~---~- 365 (731)
T TIGR02639 312 --LRCIGSTTYEE--YKN-----------------HFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEF---H- 365 (731)
T ss_pred --eEEEEecCHHH--HHH-----------------HhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhc---c-
Confidence 45888888411 100 0013688999995 89999999999999988776664321 2
Q ss_pred CccccchHHHHHHHHh
Q psy14504 662 MDLKISKAALKKISNI 677 (951)
Q Consensus 662 ~~l~~~~~~~~~L~~~ 677 (951)
.+.++++++..++..
T Consensus 366 -~v~i~~~al~~~~~l 380 (731)
T TIGR02639 366 -HVKYSDEALEAAVEL 380 (731)
T ss_pred -CcccCHHHHHHHHHh
Confidence 378999999999874
No 297
>KOG0742|consensus
Probab=99.38 E-value=2.2e-12 Score=135.45 Aligned_cols=165 Identities=18% Similarity=0.287 Sum_probs=109.3
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCC
Q psy14504 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA 521 (951)
Q Consensus 442 v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~ 521 (951)
||-.....+.|..... .....+..+.|..++|||||||||||++|+-||+.. +..+..+.+.++..
T Consensus 357 ViL~psLe~Rie~lA~-aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~S---GlDYA~mTGGDVAP---------- 422 (630)
T KOG0742|consen 357 VILHPSLEKRIEDLAI-ATANTKKHQAPFRNILFYGPPGTGKTMFARELARHS---GLDYAIMTGGDVAP---------- 422 (630)
T ss_pred eecCHHHHHHHHHHHH-HhcccccccchhhheeeeCCCCCCchHHHHHHHhhc---CCceehhcCCCccc----------
Confidence 4444444444444332 233444556677799999999999999999999987 54444444433321
Q ss_pred CCCCccccccchhHHHHHhCC-CeEEEEcccccc---------CHHHHHHHHHHh-hcceeecCCCeEeecCCeEEEEec
Q psy14504 522 PPGYIGYEEGGYLTEIVRRKP-YSLILLDEIEKA---------NSDVFNILLQIL-DDGRLTDNRGRTINFRNTIIVMTS 590 (951)
Q Consensus 522 ~~~~~g~~~~~~l~~~~~~~~-~~vl~iDEid~~---------~~~~~~~Ll~~l-e~g~~~~~~g~~~~~~~~iiI~tt 590 (951)
-|--|.+....+++..+.+. +=+|||||+|.+ +.....+|..+| ..|. ..++.+++++|
T Consensus 423 -lG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTGd---------qSrdivLvlAt 492 (630)
T KOG0742|consen 423 -LGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---------QSRDIVLVLAT 492 (630)
T ss_pred -cchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhcc---------cccceEEEecc
Confidence 12223334466777775544 557899999853 333333333333 2221 34677889999
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILK 654 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~ 654 (951)
|.+.+ |+...-+|||++|.|+-+.+++..+++..+++++-
T Consensus 493 Nrpgd------------------------lDsAV~DRide~veFpLPGeEERfkll~lYlnkyi 532 (630)
T KOG0742|consen 493 NRPGD------------------------LDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYI 532 (630)
T ss_pred CCccc------------------------hhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHh
Confidence 97654 56778899999999999999999999999988864
No 298
>PRK06893 DNA replication initiation factor; Validated
Probab=99.38 E-value=7.4e-12 Score=130.81 Aligned_cols=148 Identities=14% Similarity=0.227 Sum_probs=102.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
.++|+||||||||+|++++|+.+...+....++.+.+.... ...+...+ ....+|+|||+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~------------------~~~~~~~~--~~~dlLilDDi 100 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYF------------------SPAVLENL--EQQDLVCLDDL 100 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhh------------------hHHHHhhc--ccCCEEEEeCh
Confidence 58999999999999999999998665556666655421110 00111112 23469999999
Q ss_pred cccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccC
Q psy14504 552 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID 629 (951)
Q Consensus 552 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~ 629 (951)
+.+. +..+..|+.+++... .....++|+|+|..+..+. ...|++.+|+.
T Consensus 101 ~~~~~~~~~~~~l~~l~n~~~---------~~~~~illits~~~p~~l~--------------------~~~~~L~sRl~ 151 (229)
T PRK06893 101 QAVIGNEEWELAIFDLFNRIK---------EQGKTLLLISADCSPHALS--------------------IKLPDLASRLT 151 (229)
T ss_pred hhhcCChHHHHHHHHHHHHHH---------HcCCcEEEEeCCCChHHcc--------------------ccchhHHHHHh
Confidence 9875 444567777776411 1123467788888776542 23478889883
Q ss_pred --cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHh
Q psy14504 630 --DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 677 (951)
Q Consensus 630 --~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 677 (951)
.++.+.+++.+++.+|++.... ..+ +.++++++++|++.
T Consensus 152 ~g~~~~l~~pd~e~~~~iL~~~a~-------~~~--l~l~~~v~~~L~~~ 192 (229)
T PRK06893 152 WGEIYQLNDLTDEQKIIVLQRNAY-------QRG--IELSDEVANFLLKR 192 (229)
T ss_pred cCCeeeCCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHh
Confidence 4899999999999999655443 334 88999999999994
No 299
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.38 E-value=1.1e-11 Score=128.28 Aligned_cols=202 Identities=14% Similarity=0.259 Sum_probs=121.0
Q ss_pred CCCCcc-ccH--HHHHHHHHHHHcCCC--CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14504 42 KLDPVI-GRD--DEIRRAIQVLQRRSK--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 116 (951)
Q Consensus 42 ~l~~lv-G~~--~~i~~l~~~l~~~~~--~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 116 (951)
+|+.+| |.. -....+..+...+.. +.++|+||+|+|||+|.+++++++.... .+..++.++...+.. .
T Consensus 6 tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~-----~~~~v~y~~~~~f~~--~ 78 (219)
T PF00308_consen 6 TFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQH-----PGKRVVYLSAEEFIR--E 78 (219)
T ss_dssp SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHC-----TTS-EEEEEHHHHHH--H
T ss_pred ccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcc-----ccccceeecHHHHHH--H
Confidence 788886 643 334444444443322 4589999999999999999999875421 156777777655431 1
Q ss_pred ccccHH-HHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHH
Q psy14504 117 YRGEFE-DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAF 195 (951)
Q Consensus 117 ~~g~~~-~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l 195 (951)
+..... ..+..+....... -+|+||+++.+.... .........+....++++.+||++...|. .+..+++.+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~---DlL~iDDi~~l~~~~--~~q~~lf~l~n~~~~~~k~li~ts~~~P~--~l~~~~~~L 151 (219)
T PF00308_consen 79 FADALRDGEIEEFKDRLRSA---DLLIIDDIQFLAGKQ--RTQEELFHLFNRLIESGKQLILTSDRPPS--ELSGLLPDL 151 (219)
T ss_dssp HHHHHHTTSHHHHHHHHCTS---SEEEEETGGGGTTHH--HHHHHHHHHHHHHHHTTSEEEEEESS-TT--TTTTS-HHH
T ss_pred HHHHHHcccchhhhhhhhcC---CEEEEecchhhcCch--HHHHHHHHHHHHHHhhCCeEEEEeCCCCc--cccccChhh
Confidence 110000 1122333444322 299999999985421 00123334445555677766555544443 233578999
Q ss_pred hhcce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHh
Q psy14504 196 ERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 196 ~~Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
.+||. .+.+.+|+.++|..|++..+.. .++.++++++..++....+.+ +....+++...++.
T Consensus 152 ~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~----~~~~l~~~v~~~l~~~~~~~~------r~L~~~l~~l~~~~ 216 (219)
T PF00308_consen 152 RSRLSWGLVVELQPPDDEDRRRILQKKAKE----RGIELPEEVIEYLARRFRRDV------RELEGALNRLDAYA 216 (219)
T ss_dssp HHHHHCSEEEEE----HHHHHHHHHHHHHH----TT--S-HHHHHHHHHHTTSSH------HHHHHHHHHHHHHH
T ss_pred hhhHhhcchhhcCCCCHHHHHHHHHHHHHH----hCCCCcHHHHHHHHHhhcCCH------HHHHHHHHHHHHHh
Confidence 99996 3999999999999999988874 578899999999999887766 56666666554443
No 300
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.38 E-value=1.7e-12 Score=124.93 Aligned_cols=128 Identities=30% Similarity=0.523 Sum_probs=85.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCC---CCccccccchhHHHHHhCCCeEEEE
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP---GYIGYEEGGYLTEIVRRKPYSLILL 548 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~---~~~g~~~~~~l~~~~~~~~~~vl~i 548 (951)
+++|+||||||||++|+.+|+.+ +.++..+.++...+... ++|... +...... +.+...++ .++|+||
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~---~~~~~~i~~~~~~~~~d---l~g~~~~~~~~~~~~~-~~l~~a~~--~~~il~l 71 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL---GRPVIRINCSSDTTEED---LIGSYDPSNGQFEFKD-GPLVRAMR--KGGILVL 71 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH---TCEEEEEE-TTTSTHHH---HHCEEET-TTTTCEEE--CCCTTHH--EEEEEEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh---hcceEEEEecccccccc---ceeeeeeccccccccc-cccccccc--ceeEEEE
Confidence 48999999999999999999999 77898898887655433 333221 1111111 12222222 5689999
Q ss_pred ccccccCHHHHHHHHHHhhcceeecCC-CeEeecC-------CeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhcc
Q psy14504 549 DEIEKANSDVFNILLQILDDGRLTDNR-GRTINFR-------NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYF 620 (951)
Q Consensus 549 DEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~~~~-------~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 620 (951)
||++++++.+++.|+.+++++.+.... +...... +..||+|+|..... ...+
T Consensus 72 DEin~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~--------------------~~~l 131 (139)
T PF07728_consen 72 DEINRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKG--------------------RKEL 131 (139)
T ss_dssp SSCGG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST----------------------TTTT
T ss_pred CCcccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCC--------------------cCcC
Confidence 999999999999999999998887443 2233332 38999999975511 3457
Q ss_pred ChhHhhcc
Q psy14504 621 RPEFINRI 628 (951)
Q Consensus 621 ~p~l~~R~ 628 (951)
+++|.+||
T Consensus 132 ~~al~~Rf 139 (139)
T PF07728_consen 132 SPALLDRF 139 (139)
T ss_dssp CHHHHTT-
T ss_pred CHHHHhhC
Confidence 88898886
No 301
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.38 E-value=3.7e-12 Score=141.05 Aligned_cols=175 Identities=29% Similarity=0.322 Sum_probs=118.4
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14504 431 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510 (951)
Q Consensus 431 l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 510 (951)
+..+...+...++|++.++..+..++.... ++||.||||||||++|+.+|+.+ +.+|+.+.|....
T Consensus 15 ~~~~~~~~~~~~~g~~~~~~~~l~a~~~~~-----------~vll~G~PG~gKT~la~~lA~~l---~~~~~~i~~t~~l 80 (329)
T COG0714 15 LGKIRSELEKVVVGDEEVIELALLALLAGG-----------HVLLEGPPGVGKTLLARALARAL---GLPFVRIQCTPDL 80 (329)
T ss_pred HHHHHhhcCCeeeccHHHHHHHHHHHHcCC-----------CEEEECCCCccHHHHHHHHHHHh---CCCeEEEecCCCC
Confidence 344556667779999999988888776443 79999999999999999999999 6899999998655
Q ss_pred chhchhcccCCCCCCcc---cccc----chhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeec-C
Q psy14504 511 EKHSISRLIGAPPGYIG---YEEG----GYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINF-R 582 (951)
Q Consensus 511 ~~~~~~~l~g~~~~~~g---~~~~----~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~-~ 582 (951)
... .++|...-..- .... +.++.... +|+|+|||+++++.+|+.|++.|+++.++...-..... .
T Consensus 81 ~p~---d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~----~ill~DEInra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~ 153 (329)
T COG0714 81 LPS---DLLGTYAYAALLLEPGEFRFVPGPLFAAVR----VILLLDEINRAPPEVQNALLEALEERQVTVPGLTTIRLPP 153 (329)
T ss_pred CHH---HhcCchhHhhhhccCCeEEEecCCcccccc----eEEEEeccccCCHHHHHHHHHHHhCcEEEECCcCCcCCCC
Confidence 442 23333211000 0000 11211111 69999999999999999999999998888654221444 3
Q ss_pred CeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHH
Q psy14504 583 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSI 645 (951)
Q Consensus 583 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i 645 (951)
..++|+|+|.....- .+.+++++++||...+.+..+..++-..+
T Consensus 154 ~f~viaT~Np~e~~g-------------------~~~l~eA~ldRf~~~~~v~yp~~~~e~~~ 197 (329)
T COG0714 154 PFIVIATQNPGEYEG-------------------TYPLPEALLDRFLLRIYVDYPDSEEEERI 197 (329)
T ss_pred CCEEEEccCccccCC-------------------CcCCCHHHHhhEEEEEecCCCCchHHHHH
Confidence 445566667432210 22457899999977788888845444444
No 302
>PRK09087 hypothetical protein; Validated
Probab=99.37 E-value=2e-11 Score=126.67 Aligned_cols=175 Identities=11% Similarity=0.062 Sum_probs=118.7
Q ss_pred CCCCccc-c-HH-HHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcccc
Q psy14504 42 KLDPVIG-R-DD-EIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYR 118 (951)
Q Consensus 42 ~l~~lvG-~-~~-~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 118 (951)
+|+++|. . .. .+..+.... ....+.++|+||+|+|||+|++++++.. +..+ ++...+
T Consensus 19 ~~~~Fi~~~~N~~a~~~l~~~~-~~~~~~l~l~G~~GsGKThLl~~~~~~~----------~~~~--i~~~~~------- 78 (226)
T PRK09087 19 GRDDLLVTESNRAAVSLVDHWP-NWPSPVVVLAGPVGSGKTHLASIWREKS----------DALL--IHPNEI------- 78 (226)
T ss_pred ChhceeecCchHHHHHHHHhcc-cCCCCeEEEECCCCCCHHHHHHHHHHhc----------CCEE--ecHHHc-------
Confidence 7888873 3 33 333332222 2223348999999999999999999764 3333 332211
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhh-cCHHHhh
Q psy14504 119 GEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIE-KDAAFER 197 (951)
Q Consensus 119 g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~-~~~~l~~ 197 (951)
...++..+. . .+|+|||++.+.. ........+....+.++.++|++++.+. .+. ..+.+++
T Consensus 79 ------~~~~~~~~~-~---~~l~iDDi~~~~~-----~~~~lf~l~n~~~~~g~~ilits~~~p~---~~~~~~~dL~S 140 (226)
T PRK09087 79 ------GSDAANAAA-E---GPVLIEDIDAGGF-----DETGLFHLINSVRQAGTSLLMTSRLWPS---SWNVKLPDLKS 140 (226)
T ss_pred ------chHHHHhhh-c---CeEEEECCCCCCC-----CHHHHHHHHHHHHhCCCeEEEECCCChH---HhccccccHHH
Confidence 112222322 1 2799999997631 1234555666666778888888777666 233 3789999
Q ss_pred cc---eEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHH
Q psy14504 198 RF---QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 264 (951)
Q Consensus 198 Rf---~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 264 (951)
|| ..+++.+|+.+++..++++.++. .++.++++++.++++.+.+.+ +.+..+++...
T Consensus 141 Rl~~gl~~~l~~pd~e~~~~iL~~~~~~----~~~~l~~ev~~~La~~~~r~~------~~l~~~l~~L~ 200 (226)
T PRK09087 141 RLKAATVVEIGEPDDALLSQVIFKLFAD----RQLYVDPHVVYYLVSRMERSL------FAAQTIVDRLD 200 (226)
T ss_pred HHhCCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhhhhH------HHHHHHHHHHH
Confidence 99 46999999999999999988875 478999999999999988876 66665555543
No 303
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.37 E-value=9.1e-12 Score=130.66 Aligned_cols=155 Identities=11% Similarity=0.146 Sum_probs=111.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||+|||||++|+++++.+...+..+..+++.+..... .......+|+|||+
T Consensus 44 ~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~~~------------------------~~~~~~~~liiDdi 99 (227)
T PRK08903 44 FFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLLAF------------------------DFDPEAELYAVDDV 99 (227)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHHHH------------------------hhcccCCEEEEeCh
Confidence 699999999999999999999987777788888887643210 01123469999999
Q ss_pred cccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhcc--C
Q psy14504 552 EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI--D 629 (951)
Q Consensus 552 d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~--~ 629 (951)
|.+++..+..|+.+++... .....++|++++..+. ...+.+++.+|+ .
T Consensus 100 ~~l~~~~~~~L~~~~~~~~---------~~~~~~vl~~~~~~~~---------------------~~~l~~~L~sr~~~~ 149 (227)
T PRK08903 100 ERLDDAQQIALFNLFNRVR---------AHGQGALLVAGPAAPL---------------------ALPLREDLRTRLGWG 149 (227)
T ss_pred hhcCchHHHHHHHHHHHHH---------HcCCcEEEEeCCCCHH---------------------hCCCCHHHHHHHhcC
Confidence 9999999999999987411 1123456677665432 123568899998 3
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccch
Q psy14504 630 DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCK 692 (951)
Q Consensus 630 ~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~ 692 (951)
..+.++|++.++...++... +...+ +.++++++++|++ . |..+++.+.+.+
T Consensus 150 ~~i~l~pl~~~~~~~~l~~~-------~~~~~--v~l~~~al~~L~~-~--~~gn~~~l~~~l 200 (227)
T PRK08903 150 LVYELKPLSDADKIAALKAA-------AAERG--LQLADEVPDYLLT-H--FRRDMPSLMALL 200 (227)
T ss_pred eEEEecCCCHHHHHHHHHHH-------HHHcC--CCCCHHHHHHHHH-h--ccCCHHHHHHHH
Confidence 59999999998776664432 23334 8899999999998 3 444456665553
No 304
>KOG0991|consensus
Probab=99.37 E-value=2.3e-12 Score=125.87 Aligned_cols=188 Identities=16% Similarity=0.257 Sum_probs=129.3
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC--CceEEeccccccchhchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 517 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 517 (951)
.+++|.++.++.+....+... .++++|.|||||||||.+.+||+.+.+.. ..+..++.++-.
T Consensus 27 ~dIVGNe~tv~rl~via~~gn---------mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR------- 90 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKEGN---------MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER------- 90 (333)
T ss_pred HHhhCCHHHHHHHHHHHHcCC---------CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc-------
Confidence 567899999999988876433 23799999999999999999999997643 233334443311
Q ss_pred ccCCCCCCcccccc-chhHHHHH------hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEec
Q psy14504 518 LIGAPPGYIGYEEG-GYLTEIVR------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 590 (951)
Q Consensus 518 l~g~~~~~~g~~~~-~~l~~~~~------~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 590 (951)
|-+.- ..+..++. .....|+++||+|++...+|++|...||- +.+.+.|.+++
T Consensus 91 ---------GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEi-----------yS~ttRFalaC 150 (333)
T KOG0991|consen 91 ---------GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEI-----------YSNTTRFALAC 150 (333)
T ss_pred ---------ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHH-----------Hcccchhhhhh
Confidence 11111 11222221 23468999999999999999999999983 56778899999
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 670 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 670 (951)
|.... +-.++.+|| .++.|..++..++..- +.+..+..+ +.++++.
T Consensus 151 N~s~K------------------------IiEPIQSRC-AiLRysklsd~qiL~R-------l~~v~k~Ek--v~yt~dg 196 (333)
T KOG0991|consen 151 NQSEK------------------------IIEPIQSRC-AILRYSKLSDQQILKR-------LLEVAKAEK--VNYTDDG 196 (333)
T ss_pred cchhh------------------------hhhhHHhhh-HhhhhcccCHHHHHHH-------HHHHHHHhC--CCCCcch
Confidence 97443 335788999 6999999999876654 333334444 6778888
Q ss_pred HHHHHHhcccccccccccccchHHHHHHHHhhc
Q psy14504 671 LKKISNIGFDLIYGARDVHGCKKSLSILLKKIH 703 (951)
Q Consensus 671 ~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~ 703 (951)
++.+.-. .-||.+..+.-|+.-+.-.+
T Consensus 197 Leaiift------a~GDMRQalNnLQst~~g~g 223 (333)
T KOG0991|consen 197 LEAIIFT------AQGDMRQALNNLQSTVNGFG 223 (333)
T ss_pred HHHhhhh------ccchHHHHHHHHHHHhcccc
Confidence 8877652 23566665555555554333
No 305
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.37 E-value=1.6e-11 Score=135.07 Aligned_cols=175 Identities=17% Similarity=0.208 Sum_probs=124.3
Q ss_pred CCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcccccc
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGE 120 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 120 (951)
+|++++|++..++.+...+..+..+|+ ||+||+|+|||++|+.+|+.+.+...... ...++.+... . +...
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~--h~D~~~~~~~---~-~~~i-- 73 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQRE--YVDIIEFKPI---N-KKSI-- 73 (313)
T ss_pred ChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCC--CCCeEEeccc---c-CCCC--
Confidence 589999999999999999988777776 79999999999999999999865322111 1233333221 0 1111
Q ss_pred HHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHhhhcCHHH
Q psy14504 121 FEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAF 195 (951)
Q Consensus 121 ~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~~~~~l 195 (951)
....++.+.+.+. ..++..|++||++|.+. .+++|.|+..+|. ..+++|.+|+.++ .+.|++
T Consensus 74 ~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~--------~~a~naLLK~LEepp~~t~~il~~~~~~-----~ll~TI 140 (313)
T PRK05564 74 GVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMT--------EQAQNAFLKTIEEPPKGVFIILLCENLE-----QILDTI 140 (313)
T ss_pred CHHHHHHHHHHHhcCcccCCceEEEEechhhcC--------HHHHHHHHHHhcCCCCCeEEEEEeCChH-----hCcHHH
Confidence 1224566665443 12345799999999984 4678899999985 3466666666666 788999
Q ss_pred hhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q psy14504 196 ERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYR 245 (951)
Q Consensus 196 ~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~ 245 (951)
+|||..+.|.+|+.++....++.... .++++.+..++..+++
T Consensus 141 ~SRc~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~l~~~~~g 182 (313)
T PRK05564 141 KSRCQIYKLNRLSKEEIEKFISYKYN--------DIKEEEKKSAIAFSDG 182 (313)
T ss_pred HhhceeeeCCCcCHHHHHHHHHHHhc--------CCCHHHHHHHHHHcCC
Confidence 99999999999999998877764321 3566666666666654
No 306
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.37 E-value=1.1e-11 Score=148.68 Aligned_cols=178 Identities=17% Similarity=0.260 Sum_probs=124.1
Q ss_pred CccccHHHHHHHHHHHHc---------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc--
Q psy14504 45 PVIGRDDEIRRAIQVLQR---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-- 113 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~---------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~-- 113 (951)
.++||+..++.+...+.. ++..++||+||||||||++|+++|+.+ +.+++.++++....
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l----------~~~~i~id~se~~~~~ 528 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMERH 528 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCCcEEeechhhcccc
Confidence 579999999999887762 223468999999999999999999998 56777777655421
Q ss_pred ------C--ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------
Q psy14504 114 ------G--TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------- 172 (951)
Q Consensus 114 ------~--~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~------------- 172 (951)
| ..|.|.. ....+.++....+.+||||||+|.+.+ ++++.|+++|+.|
T Consensus 529 ~~~~LiG~~~gyvg~~---~~g~L~~~v~~~p~sVlllDEieka~~--------~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 529 TVSRLIGAPPGYVGFD---QGGLLTDAVIKHPHAVLLLDEIEKAHP--------DVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred cHHHHcCCCCCccccc---ccchHHHHHHhCCCcEEEeccHhhhhH--------HHHHHHHHHHhcCeeecCCCceecCC
Confidence 1 1233311 112233332234568999999999943 6888999988754
Q ss_pred cEEEEEeecchH--H-H-----------------HhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhh-----h
Q psy14504 173 ELHCIGATTLNE--Y-R-----------------QYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEV-----H 226 (951)
Q Consensus 173 ~i~vI~at~~~~--~-~-----------------~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~-----~ 226 (951)
.+++|+|||... . . -.....|.|..|++. |.|++++.++..+|+...+.++.. .
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 356888888320 0 0 001356899999985 999999999999998766543321 2
Q ss_pred cCCCCChHHHHHHHHHh
Q psy14504 227 HGVEITDPAIVAASELS 243 (951)
Q Consensus 227 ~~~~i~~~~l~~~~~~s 243 (951)
..+.+++++++.++...
T Consensus 678 i~l~~~~~~~~~l~~~~ 694 (758)
T PRK11034 678 VSLEVSQEARDWLAEKG 694 (758)
T ss_pred CCceECHHHHHHHHHhC
Confidence 34678999999888754
No 307
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.36 E-value=1.8e-12 Score=127.36 Aligned_cols=151 Identities=25% Similarity=0.369 Sum_probs=94.9
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce-EEecccccc---ch-hchhcc
Q psy14504 444 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI-IRIDMSEFI---EK-HSISRL 518 (951)
Q Consensus 444 Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~-~~~~~~~~~---~~-~~~~~l 518 (951)
||+.+++.+...+...+.. +.+||+||+|+||+++|+++|+.+++....- ....|.... .. +.--..
T Consensus 1 gq~~~~~~L~~~~~~~~l~--------ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~ 72 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLP--------HALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFII 72 (162)
T ss_dssp S-HHHHHHHHHHHHCTC----------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEE
T ss_pred CcHHHHHHHHHHHHcCCcc--------eeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEE
Confidence 8899999999999755422 3689999999999999999999997654321 111111110 00 000011
Q ss_pred cCCCCC--CccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCC
Q psy14504 519 IGAPPG--YIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 592 (951)
Q Consensus 519 ~g~~~~--~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 592 (951)
+..... .++.++.+.+...+. .++..|++|||+|+++.+++|+||+.||+ +..+++||++|+.
T Consensus 73 ~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEe-----------pp~~~~fiL~t~~ 141 (162)
T PF13177_consen 73 IKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEE-----------PPENTYFILITNN 141 (162)
T ss_dssp EETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHS-----------TTTTEEEEEEES-
T ss_pred EecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcC-----------CCCCEEEEEEECC
Confidence 111111 223233333333332 34578999999999999999999999998 7789999999986
Q ss_pred CchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCC
Q psy14504 593 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN 638 (951)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~ 638 (951)
.. .+.|.++||+ ..+.|+|++
T Consensus 142 ~~------------------------~il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 142 PS------------------------KILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp GG------------------------GS-HHHHTTS-EEEEE----
T ss_pred hH------------------------HChHHHHhhc-eEEecCCCC
Confidence 43 4568999999 799999875
No 308
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=1.1e-11 Score=136.55 Aligned_cols=183 Identities=16% Similarity=0.254 Sum_probs=120.6
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC----ceEEe----cccccc-
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----SIIRI----DMSEFI- 510 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~----~~~~~----~~~~~~- 510 (951)
..++||+.+...+..++...+. .+.+||+||+|+|||++|+.+|+.+.+... +.... +|..+.
T Consensus 23 ~~l~Gh~~a~~~L~~a~~~grl--------~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 23 TRLFGHEEAEAFLAQAYREGKL--------HHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred hhccCcHHHHHHHHHHHHcCCC--------CeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 5689999999999999985542 235999999999999999999999965321 11000 111000
Q ss_pred --chhchh-cccCCC--------CCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCC
Q psy14504 511 --EKHSIS-RLIGAP--------PGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR 575 (951)
Q Consensus 511 --~~~~~~-~l~g~~--------~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~ 575 (951)
....-. ..+..+ ...++.++.+.+.+.+. .....|++|||+|.+++..+|.||+.||+
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEE------- 167 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEE------- 167 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhc-------
Confidence 000000 001111 01122223334444443 34568999999999999999999999997
Q ss_pred CeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHH
Q psy14504 576 GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKN 655 (951)
Q Consensus 576 g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~ 655 (951)
+..+++||+.|+... .+.|.+.+|| ..+.|+|++.+++.+++...
T Consensus 168 ----pp~~~~fiLit~~~~------------------------~llptIrSRc-~~i~l~pl~~~~~~~~L~~~------ 212 (351)
T PRK09112 168 ----PPARALFILISHSSG------------------------RLLPTIRSRC-QPISLKPLDDDELKKALSHL------ 212 (351)
T ss_pred ----CCCCceEEEEECChh------------------------hccHHHHhhc-cEEEecCCCHHHHHHHHHHh------
Confidence 456777777776532 2458899999 69999999999999996641
Q ss_pred HHHhcCCccccchHHHHHHHHh
Q psy14504 656 KLLKMNMDLKISKAALKKISNI 677 (951)
Q Consensus 656 ~~~~~~~~l~~~~~~~~~L~~~ 677 (951)
+....++++++..++..
T Consensus 213 -----~~~~~~~~~~~~~i~~~ 229 (351)
T PRK09112 213 -----GSSQGSDGEITEALLQR 229 (351)
T ss_pred -----hcccCCCHHHHHHHHHH
Confidence 11122667777777763
No 309
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.36 E-value=1.6e-11 Score=133.46 Aligned_cols=195 Identities=17% Similarity=0.169 Sum_probs=131.0
Q ss_pred CCCCccccHHHHHHHHHHHHcCC-CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------CcCCCeEEEEehhhhh
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQRRS-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPN--------SLLSKKILLLDIALLL 112 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~~~~-~~~iLL~GppGtGKTtla~~la~~l~~~~~~~--------~~~~~~~~~~~~~~l~ 112 (951)
.|++++||+..++.+...+..++ ++..||+||+|+||+++|.++|+.+.+..... .....+++.+......
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~ 81 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQH 81 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccc
Confidence 47899999999999999988776 46678999999999999999999987643111 1112233333321111
Q ss_pred cCcc-------cc-------cc-HHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC-Cc
Q psy14504 113 AGTK-------YR-------GE-FEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-GE 173 (951)
Q Consensus 113 ~~~~-------~~-------g~-~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-~~ 173 (951)
.|.. .. +. ....++.+...+. ..++..|++||++|.|. ..++|.|+..||. +.
T Consensus 82 ~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~--------~~aaNaLLK~LEEPp~ 153 (314)
T PRK07399 82 QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMN--------EAAANALLKTLEEPGN 153 (314)
T ss_pred cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcC--------HHHHHHHHHHHhCCCC
Confidence 1100 00 01 1124555655544 12346799999999994 3678889999973 35
Q ss_pred EEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCc
Q psy14504 174 LHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 253 (951)
Q Consensus 174 i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 253 (951)
.++|.+|+.++ .+-|+++|||..+.|++|+.++..++|...... .+. +.....++.++.+. |
T Consensus 154 ~~fILi~~~~~-----~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~----~~~---~~~~~~l~~~a~Gs------~ 215 (314)
T PRK07399 154 GTLILIAPSPE-----SLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDE----EIL---NINFPELLALAQGS------P 215 (314)
T ss_pred CeEEEEECChH-----hCcHHHHhhceEEecCCCCHHHHHHHHHHhhcc----ccc---hhHHHHHHHHcCCC------H
Confidence 56778888777 899999999999999999999999998865321 111 11235566666554 4
Q ss_pred hhHHHHHHH
Q psy14504 254 DKAIDLIDE 262 (951)
Q Consensus 254 ~~a~~ll~~ 262 (951)
+.++.+++.
T Consensus 216 ~~al~~l~~ 224 (314)
T PRK07399 216 GAAIANIEQ 224 (314)
T ss_pred HHHHHHHHH
Confidence 777776654
No 310
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.36 E-value=1.5e-11 Score=124.83 Aligned_cols=162 Identities=18% Similarity=0.159 Sum_probs=111.0
Q ss_pred HHHHHHHcCCCC-CcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCc---------------CCCeEEEEehhhhhcCcccc
Q psy14504 55 RAIQVLQRRSKN-NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL---------------LSKKILLLDIALLLAGTKYR 118 (951)
Q Consensus 55 ~l~~~l~~~~~~-~iLL~GppGtGKTtla~~la~~l~~~~~~~~~---------------~~~~~~~~~~~~l~~~~~~~ 118 (951)
.+.+.+..+..+ .+||+||+|+|||++|+.+++.+.+.. +... ....+..+.... . .
T Consensus 3 ~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~-~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~----~-~- 75 (188)
T TIGR00678 3 QLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQ-PGGGEPCGECPSCRLIEAGNHPDLHRLEPEG----Q-S- 75 (188)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHcCCCCcEEEecccc----C-c-
Confidence 345555555554 589999999999999999999986531 0000 011122222111 0 0
Q ss_pred ccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHhhhcCH
Q psy14504 119 GEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDA 193 (951)
Q Consensus 119 g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~~~~ 193 (951)
-....++.++..+.. .+...|++|||+|.|.. +.++.|+..++. ....+|.+|+... .+.+
T Consensus 76 -~~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~--------~~~~~Ll~~le~~~~~~~~il~~~~~~-----~l~~ 141 (188)
T TIGR00678 76 -IKVDQVRELVEFLSRTPQESGRRVVIIEDAERMNE--------AAANALLKTLEEPPPNTLFILITPSPE-----KLLP 141 (188)
T ss_pred -CCHHHHHHHHHHHccCcccCCeEEEEEechhhhCH--------HHHHHHHHHhcCCCCCeEEEEEECChH-----hChH
Confidence 112355566666542 24467999999999944 566778888875 3467777777664 7889
Q ss_pred HHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 194 AFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 194 ~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
++++|+..+.|.+|+.++...+++.. + ++++++..++..+++..
T Consensus 142 ~i~sr~~~~~~~~~~~~~~~~~l~~~--------g--i~~~~~~~i~~~~~g~~ 185 (188)
T TIGR00678 142 TIRSRCQVLPFPPLSEEALLQWLIRQ--------G--ISEEAAELLLALAGGSP 185 (188)
T ss_pred HHHhhcEEeeCCCCCHHHHHHHHHHc--------C--CCHHHHHHHHHHcCCCc
Confidence 99999999999999999998888654 2 67888998888887654
No 311
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.36 E-value=9.8e-12 Score=135.52 Aligned_cols=206 Identities=18% Similarity=0.271 Sum_probs=123.2
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC------------CC-ceEEecc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN------------EE-SIIRIDM 506 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~------------~~-~~~~~~~ 506 (951)
..|+||++++..+...+-... .+++++.|+||+|||+++++++..+-.. .. .+.+.+|
T Consensus 4 ~~ivgq~~~~~al~~~~~~~~---------~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (337)
T TIGR02030 4 TAIVGQDEMKLALLLNVIDPK---------IGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEV 74 (337)
T ss_pred cccccHHHHHHHHHHHhcCCC---------CCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHH
Confidence 458899999988876665322 2379999999999999999999887210 00 0111111
Q ss_pred ccc-------------------cchhchhcccCCCCCCccc-ccc--chhHHHHHhCCCeEEEEccccccCHHHHHHHHH
Q psy14504 507 SEF-------------------IEKHSISRLIGAPPGYIGY-EEG--GYLTEIVRRKPYSLILLDEIEKANSDVFNILLQ 564 (951)
Q Consensus 507 ~~~-------------------~~~~~~~~l~g~~~~~~g~-~~~--~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~ 564 (951)
... -......+++|... +... ..+ ..-...+.++.+++||+||++.+++.+|+.|++
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d-~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~ 153 (337)
T TIGR02030 75 RIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLD-IERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLD 153 (337)
T ss_pred hhhhhcccccccccCCCCcCCCCCCCcccceecchh-HhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHH
Confidence 110 00001112222210 0000 000 011123455667999999999999999999999
Q ss_pred Hhhcceeec-CCCeEeec-CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCCh-hh
Q psy14504 565 ILDDGRLTD-NRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KN 641 (951)
Q Consensus 565 ~le~g~~~~-~~g~~~~~-~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~-~~ 641 (951)
.|++|..+- ..|..... .+.++|+|+|.. .+.|+++|++||...+.+.+++. ++
T Consensus 154 ~l~~g~~~v~r~G~~~~~~~r~iviat~np~-----------------------eg~l~~~LldRf~l~i~l~~p~~~ee 210 (337)
T TIGR02030 154 VAASGWNVVEREGISIRHPARFVLVGSGNPE-----------------------EGELRPQLLDRFGLHAEIRTVRDVEL 210 (337)
T ss_pred HHHhCCeEEEECCEEEEcCCCEEEEeccccc-----------------------cCCCCHHHHhhcceEEECCCCCCHHH
Confidence 999986332 22444333 355666666632 23589999999998888988876 66
Q ss_pred HHHHHHHHHHH----------H-------HHH---HHhcCCccccchHHHHHHHHhc
Q psy14504 642 ILSIANIQLNI----------L-------KNK---LLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 642 ~~~i~~~~l~~----------~-------~~~---~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
..+|+...... + ... .+..--.+.+++++++++++..
T Consensus 211 r~eIL~~~~~~~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~ 267 (337)
T TIGR02030 211 RVEIVERRTEYDADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELC 267 (337)
T ss_pred HHHHHHhhhhcccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHH
Confidence 67777663221 1 000 1111123668888888887743
No 312
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.2e-12 Score=138.54 Aligned_cols=178 Identities=21% Similarity=0.258 Sum_probs=119.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC-------CceEEe--------
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE-------ESIIRI-------- 504 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~-------~~~~~~-------- 504 (951)
.+|+||+.+++.+..+..-.+ ++||+||||||||++|+.+...+-.-. ..+.++
T Consensus 179 ~DV~GQ~~AKrAleiAAAGgH-----------nLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~ 247 (490)
T COG0606 179 KDVKGQEQAKRALEIAAAGGH-----------NLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGC 247 (490)
T ss_pred hhhcCcHHHHHHHHHHHhcCC-----------cEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccC
Confidence 579999999999988876333 799999999999999999987661100 001111
Q ss_pred ---ccccccchh---chhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCC--C
Q psy14504 505 ---DMSEFIEKH---SISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR--G 576 (951)
Q Consensus 505 ---~~~~~~~~~---~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~--g 576 (951)
....|..++ +...++|.. +......+..+.++||||||+-.+.+.+++.|.+-||+|.+.... .
T Consensus 248 ~~~~~rPFr~PHHsaS~~aLvGGG--------~~p~PGeIsLAH~GVLFLDElpef~~~iLe~LR~PLE~g~i~IsRa~~ 319 (490)
T COG0606 248 PLKIHRPFRAPHHSASLAALVGGG--------GVPRPGEISLAHNGVLFLDELPEFKRSILEALREPLENGKIIISRAGS 319 (490)
T ss_pred ccceeCCccCCCccchHHHHhCCC--------CCCCCCceeeecCCEEEeeccchhhHHHHHHHhCccccCcEEEEEcCC
Confidence 111122221 112333321 111223345677899999999999999999999999999988654 3
Q ss_pred eEeecCCeEEEEecCCCchhhhhh----ccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhh
Q psy14504 577 RTINFRNTIIVMTSNLGSDKIKEM----EKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKN 641 (951)
Q Consensus 577 ~~~~~~~~iiI~ttn~~~~~~~~~----~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~ 641 (951)
......+..+|+++|.......+. |...+....++ ...++-+|++|||..+..+.++..+
T Consensus 320 ~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y-----~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 320 KVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRY-----LNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred eeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHH-----HHHhhHHHHhhhhheecccCCCHHH
Confidence 444557888999999755433221 22345555444 3456778999999999999987443
No 313
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.34 E-value=1.9e-11 Score=145.95 Aligned_cols=200 Identities=17% Similarity=0.263 Sum_probs=125.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-----------------------
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----------------------- 496 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~----------------------- 496 (951)
..|+||+.++..+..+..... .+++||.||+|||||++|++|++.+-.
T Consensus 4 ~~ivGq~~~~~al~~~av~~~---------~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~ 74 (633)
T TIGR02442 4 TAIVGQEDLKLALLLNAVDPR---------IGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEEC 74 (633)
T ss_pred chhcChHHHHHHHHHHhhCCC---------CCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhh
Confidence 468999999988876665322 236999999999999999999998720
Q ss_pred ---------CCCceEEeccccccchhchhcccCCCCC----CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHH
Q psy14504 497 ---------NEESIIRIDMSEFIEKHSISRLIGAPPG----YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILL 563 (951)
Q Consensus 497 ---------~~~~~~~~~~~~~~~~~~~~~l~g~~~~----~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll 563 (951)
...+|+.+.++. ...+++|...- ..|.. ..-...+..+.++|||||||+.+++.+|+.|+
T Consensus 75 ~~~~~~~~~~~~pfv~~p~~~-----t~~~l~G~~d~~~~l~~g~~--~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll 147 (633)
T TIGR02442 75 RRKYRPSEQRPVPFVNLPLGA-----TEDRVVGSLDIERALREGEK--AFQPGLLAEAHRGILYIDEVNLLDDHLVDVLL 147 (633)
T ss_pred hhcccccccCCCCeeeCCCCC-----cHHHcCCcccHHHHhhcCCe--eecCcceeecCCCeEEeChhhhCCHHHHHHHH
Confidence 011232222211 12234443100 00000 01123345667799999999999999999999
Q ss_pred HHhhcceeec-CCCeEe-ecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCC-hh
Q psy14504 564 QILDDGRLTD-NRGRTI-NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN-RK 640 (951)
Q Consensus 564 ~~le~g~~~~-~~g~~~-~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~-~~ 640 (951)
+.|++|.+.. ..|... ...++++|+|+|... +.|+++|++||+..|.+.++. .+
T Consensus 148 ~~le~g~~~v~r~g~~~~~~~~~~lIat~np~e-----------------------g~l~~~L~dR~~l~i~v~~~~~~~ 204 (633)
T TIGR02442 148 DAAAMGVNRVEREGLSVSHPARFVLIGTMNPEE-----------------------GDLRPQLLDRFGLCVDVAAPRDPE 204 (633)
T ss_pred HHHhcCCEEEEECCceeeecCCeEEEEecCCCC-----------------------CCCCHHHHhhcceEEEccCCCchH
Confidence 9999986442 223222 236778888888421 247899999999888887765 45
Q ss_pred hHHHHHHHHHH----------H-------HHHH---HHhcCCccccchHHHHHHHHhc
Q psy14504 641 NILSIANIQLN----------I-------LKNK---LLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 641 ~~~~i~~~~l~----------~-------~~~~---~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
+..+++...+. . +... .+..--.+.++++++++|+...
T Consensus 205 ~~~~il~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~ 262 (633)
T TIGR02442 205 ERVEIIRRRLAFDADPEAFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELC 262 (633)
T ss_pred HHHHHHHHHHhhccCcHHHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHH
Confidence 55666654322 0 0011 0111123678999999998844
No 314
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.34 E-value=7.2e-12 Score=133.74 Aligned_cols=154 Identities=12% Similarity=0.112 Sum_probs=109.7
Q ss_pred CccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHH
Q psy14504 45 PVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR 124 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 124 (951)
+.+-..+..+.++..+.. ..++||.||||||||++|+.+|+.+ +.+++.+++..........|...-.
T Consensus 46 ~y~f~~~~~~~vl~~l~~--~~~ilL~G~pGtGKTtla~~lA~~l----------~~~~~rV~~~~~l~~~DliG~~~~~ 113 (327)
T TIGR01650 46 AYLFDKATTKAICAGFAY--DRRVMVQGYHGTGKSTHIEQIAARL----------NWPCVRVNLDSHVSRIDLVGKDAIV 113 (327)
T ss_pred CccCCHHHHHHHHHHHhc--CCcEEEEeCCCChHHHHHHHHHHHH----------CCCeEEEEecCCCChhhcCCCceee
Confidence 455566666777766644 4689999999999999999999999 7888888776554333333321100
Q ss_pred ----------HHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc----------------CCcEEEEE
Q psy14504 125 ----------LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS----------------RGELHCIG 178 (951)
Q Consensus 125 ----------l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le----------------~~~i~vI~ 178 (951)
....+-.|. ..+++|++||++...+ +.++.|..+|+ ...+++|+
T Consensus 114 l~~g~~~~~f~~GpL~~A~--~~g~illlDEin~a~p--------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviA 183 (327)
T TIGR01650 114 LKDGKQITEFRDGILPWAL--QHNVALCFDEYDAGRP--------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFA 183 (327)
T ss_pred ccCCcceeEEecCcchhHH--hCCeEEEechhhccCH--------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEE
Confidence 112233332 2467899999998844 44444444443 13578999
Q ss_pred eecchH-------HHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHH
Q psy14504 179 ATTLNE-------YRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQ 220 (951)
Q Consensus 179 at~~~~-------~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~ 220 (951)
|+|+.+ |.....++.++++||.. +.++.|+.++-.+|+....
T Consensus 184 T~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 184 TANTIGLGDTTGLYHGTQQINQAQMDRWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred eeCCCCcCCCCcceeeeecCCHHHHhheeeEeeCCCCCHHHHHHHHHhhc
Confidence 999976 77888899999999986 7899999999999997553
No 315
>KOG0371|consensus
Probab=99.34 E-value=1.3e-12 Score=128.73 Aligned_cols=232 Identities=16% Similarity=0.264 Sum_probs=137.2
Q ss_pred cccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcC----CccEEEcCCChHHHHHHHhh
Q psy14504 680 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLIN 755 (951)
Q Consensus 680 ~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~----~~~~~v~GNHe~~~l~~~~~ 755 (951)
.+...+||+||+++++..++ +++-..+....+|+||++|||+.|.+++.++..++ +++.+|+||||...+-.+.+
T Consensus 60 ~pvtvcGDvHGqf~dl~ELf-kiGG~~pdtnylfmGDyvdrGy~SvetVS~lva~Kvry~~rvtilrGNHEsrqitqvyg 138 (319)
T KOG0371|consen 60 CPVTVCGDVHGQFHDLIELF-KIGGLAPDTNYLFMGDYVDRGYYSVETVSLLVALKVRYPDRVTILRGNHESRQITQVYG 138 (319)
T ss_pred cceEEecCcchhHHHHHHHH-HccCCCCCcceeeeeeecccccchHHHHHHHHHhhccccceeEEecCchHHHHHHHHHh
Confidence 45567999999999999988 66657788999999999999999999999998885 78999999999875432221
Q ss_pred cccCCccccHHHhhCCCCHHHHHHHHhcCCce-EEeCCEEEEecccCcCCCHHHHHHHhHHHHHHhhcccHHhHHHHhcC
Q psy14504 756 INKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYYKKYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYN 834 (951)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~~~~~vHAG~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 834 (951)
. ..+-+++.-++.-+..+-+.+.-+|+. +..++++..|||+.|....-+.....+..+++.... .
T Consensus 139 f----ydeclRkyg~anvw~~Ftdlfdy~P~tali~~~ifc~HGgLspsi~tld~~r~~dr~~evpheg----------p 204 (319)
T KOG0371|consen 139 F----YDECLRKYGNANVWKYFTDLFDYLPLTALIESKIFCLHGGLSPSIDTLDLIRLLDRIQEVPHEG----------P 204 (319)
T ss_pred h----HHHHHhhcccccchHHhhhhhhccchHhhhccceeeccCCcCcccchHHHHHHHHHhhcccCCC----------C
Confidence 1 011111111222344555666677865 445589999999999876544444433333332211 1
Q ss_pred CCCCCCCccccccccccchhh-hHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCCC--CCCceEEEccC
Q psy14504 835 HNSINWDNHLHTIHLNTIDKL-QFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRK--TIDITVLFGHW 911 (951)
Q Consensus 835 ~~~~~w~~~~~~~~~~~~~~~-~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~--~~~~~vv~GH~ 911 (951)
-++..|++...+..-+-.-|- .+.+...-.|.|.+..|- ...+.. .+.-..+..|+-.|+.. ...+.++|||.
T Consensus 205 mcDlLwsdpddr~gwg~sprgag~tfg~di~~~fn~~n~l-slisRa---hqlvm~g~nW~~~~~~vtiFSapnycYrcg 280 (319)
T KOG0371|consen 205 MCDLLWSDPDDRCGWGISPRGAGYTFGQDISEQFNHKNGL-SLISRA---HQLVMEGYNWYHLWNVVTIFSAPNYCYRCG 280 (319)
T ss_pred hhheeccCcccCCCCCCCCCCCCcccchhhHHHhhccCCc-hHhHHH---HHHHhcccceeeecceeEEccCCchhhccc
Confidence 134456544321110000000 011112223344443331 111110 11224567898877763 45677899999
Q ss_pred CCCCcccCCCeEEcccccc
Q psy14504 912 STLGLIMKPNIICLDTGCV 930 (951)
Q Consensus 912 ~~~~~~~~~~~~~lDtG~v 930 (951)
+..++....-..+.|+-|.
T Consensus 281 n~a~i~e~d~~~~~~f~q~ 299 (319)
T KOG0371|consen 281 NQAAIMERDDTKNYDFLQF 299 (319)
T ss_pred cHHHHhhhhhccCcceEEe
Confidence 8887765555555555443
No 316
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.33 E-value=9.5e-11 Score=115.81 Aligned_cols=194 Identities=21% Similarity=0.288 Sum_probs=138.0
Q ss_pred cCCCCCccccHHHHHH----HHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14504 40 LGKLDPVIGRDDEIRR----AIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 115 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~----l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 115 (951)
|-.+.+++|-+...+. ..+++...+.+|+||+|..|||||++++++-.+.... +..+++++-.++.
T Consensus 56 ~i~L~~l~Gvd~qk~~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~-------glrLVEV~k~dl~--- 125 (287)
T COG2607 56 PIDLADLVGVDRQKEALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADE-------GLRLVEVDKEDLA--- 125 (287)
T ss_pred CcCHHHHhCchHHHHHHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhc-------CCeEEEEcHHHHh---
Confidence 3466789997765544 4557778889999999999999999999999988553 6779999887776
Q ss_pred cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC------CcEEEEEeecchHH-HHh
Q psy14504 116 KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR------GELHCIGATTLNEY-RQY 188 (951)
Q Consensus 116 ~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~------~~i~vI~at~~~~~-~~~ 188 (951)
.+-.+++.++....+.|||+|++- +..+ .+....|+..|+. ..|++.+|+|+... ...
T Consensus 126 --------~Lp~l~~~Lr~~~~kFIlFcDDLS--Fe~g-----d~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~ 190 (287)
T COG2607 126 --------TLPDLVELLRARPEKFILFCDDLS--FEEG-----DDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPED 190 (287)
T ss_pred --------hHHHHHHHHhcCCceEEEEecCCC--CCCC-----chHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHh
Confidence 477888888878889999999884 3322 4566788888864 36888888886431 101
Q ss_pred h--------hcCH--------HHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHH-HHHHhhhhcccC
Q psy14504 189 I--------EKDA--------AFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVA-ASELSYRYISDR 250 (951)
Q Consensus 189 ~--------~~~~--------~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~-~~~~s~~~~~~~ 250 (951)
+ ++++ +|..||.. +.|.+++.++-+.|++.+++. .++.++++.++. +.+.+.. .+.
T Consensus 191 ~~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~----~~l~~~~e~l~~eAl~WAt~--rg~ 264 (287)
T COG2607 191 MKDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKH----FGLDISDEELHAEALQWATT--RGG 264 (287)
T ss_pred hhhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHh--cCC
Confidence 1 1221 56679997 999999999999999999875 467777755543 3333322 223
Q ss_pred CCchhHHHHHHHHH
Q psy14504 251 FMPDKAIDLIDEAA 264 (951)
Q Consensus 251 ~~p~~a~~ll~~a~ 264 (951)
..++.|-..++..+
T Consensus 265 RSGR~A~QF~~~~~ 278 (287)
T COG2607 265 RSGRVAWQFIRDLA 278 (287)
T ss_pred CccHhHHHHHHHHH
Confidence 34455555555443
No 317
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.33 E-value=1.9e-11 Score=140.11 Aligned_cols=185 Identities=19% Similarity=0.234 Sum_probs=116.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhc-----
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS----- 514 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~----- 514 (951)
..|+||+.+++.+..++... .+++|.||||||||++|++++..+...... ..++...+.....
T Consensus 192 ~dv~Gq~~~~~al~~aa~~g-----------~~vlliG~pGsGKTtlar~l~~llp~~~~~-~~le~~~i~s~~g~~~~~ 259 (499)
T TIGR00368 192 KDIKGQQHAKRALEIAAAGG-----------HNLLLFGPPGSGKTMLASRLQGILPPLTNE-EAIETARIWSLVGKLIDR 259 (499)
T ss_pred HHhcCcHHHHhhhhhhccCC-----------CEEEEEecCCCCHHHHHHHHhcccCCCCCc-EEEeccccccchhhhccc
Confidence 45789999988777665421 379999999999999999999876332111 1222221110000
Q ss_pred --h-hcccC------CCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCC-C-eEeecCC
Q psy14504 515 --I-SRLIG------APPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-G-RTINFRN 583 (951)
Q Consensus 515 --~-~~l~g------~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~-g-~~~~~~~ 583 (951)
. .+=|- ...+.+|... ......+..+.++||||||++.+++.+++.|++.||+|.++... | ......+
T Consensus 260 ~~~~~~Pf~~p~~s~s~~~~~ggg~-~~~pG~i~lA~~GvLfLDEi~e~~~~~~~~L~~~LE~~~v~i~r~g~~~~~pa~ 338 (499)
T TIGR00368 260 KQIKQRPFRSPHHSASKPALVGGGP-IPLPGEISLAHNGVLFLDELPEFKRSVLDALREPIEDGSISISRASAKIFYPAR 338 (499)
T ss_pred cccccCCccccccccchhhhhCCcc-ccchhhhhccCCCeEecCChhhCCHHHHHHHHHHHHcCcEEEEecCcceeccCC
Confidence 0 00000 0000111100 01223456778899999999999999999999999999875322 2 3333468
Q ss_pred eEEEEecCCCchhh----hhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhH
Q psy14504 584 TIIVMTSNLGSDKI----KEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNI 642 (951)
Q Consensus 584 ~iiI~ttn~~~~~~----~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~ 642 (951)
+.+|+++|..+... ...|...+.++.++ ...++.+|++|||.++.+++++.+++
T Consensus 339 frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y-----~~~is~pllDR~dl~~~~~~~~~~~l 396 (499)
T TIGR00368 339 FQLVAAMNPCPCGHYGGKNTHCRCSPQQISRY-----WNKLSGPFLDRIDLSVEVPLLPPEKL 396 (499)
T ss_pred eEEEEecCCcccCcCCCCcccccCCHHHHHHH-----hhhccHhHHhhCCEEEEEcCCCHHHH
Confidence 89999999643111 12233445555544 44688999999999999999876654
No 318
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.33 E-value=2.7e-11 Score=134.80 Aligned_cols=191 Identities=26% Similarity=0.355 Sum_probs=126.6
Q ss_pred CCC-CccccHHHHHHHHHHHH----c-------C-------CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14504 42 KLD-PVIGRDDEIRRAIQVLQ----R-------R-------SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 102 (951)
Q Consensus 42 ~l~-~lvG~~~~i~~l~~~l~----~-------~-------~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~ 102 (951)
.|+ -+|||++.++.+...+. + . ...++||+||||||||++|+++|+.+ +.+
T Consensus 74 ~L~~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l----------~~p 143 (413)
T TIGR00382 74 HLDEYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARIL----------NVP 143 (413)
T ss_pred HhcceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhc----------CCC
Confidence 444 35899999888876552 1 1 13689999999999999999999988 667
Q ss_pred EEEEehhhhhcCcccccc-HHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCC------CCchhHHhhhhhhccC-
Q psy14504 103 ILLLDIALLLAGTKYRGE-FEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKV------EGSIDAGNMLKPELSR- 171 (951)
Q Consensus 103 ~~~~~~~~l~~~~~~~g~-~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~------~~~~~~~~~L~~~le~- 171 (951)
+..++...+.. ..|.|. .+..+..++..+. ....++||||||+|.+.+.... ..+..+++.|+.+|+.
T Consensus 144 f~~~da~~L~~-~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~ 222 (413)
T TIGR00382 144 FAIADATTLTE-AGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGT 222 (413)
T ss_pred eEEechhhccc-cccccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhcc
Confidence 77777766542 346675 3444444443221 1234679999999999864321 1123577888888841
Q ss_pred --------------CcEEEEEeecch-------------------------------------HH-H-----H--hhhcC
Q psy14504 172 --------------GELHCIGATTLN-------------------------------------EY-R-----Q--YIEKD 192 (951)
Q Consensus 172 --------------~~i~vI~at~~~-------------------------------------~~-~-----~--~~~~~ 192 (951)
...++|.|+|-. +. . . .+.+.
T Consensus 223 ~~~v~~~~gr~~~~~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~ 302 (413)
T TIGR00382 223 VANVPPQGGRKHPYQEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLI 302 (413)
T ss_pred ceecccCCCccccCCCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhH
Confidence 123456665540 00 0 0 01245
Q ss_pred HHHhhcceE-EEeeCCCHHHHHHHHHH----HHHhhhh-----hcCCCCChHHHHHHHHHh
Q psy14504 193 AAFERRFQK-ILVEEPDIEETISILRG----LQKKYEV-----HHGVEITDPAIVAASELS 243 (951)
Q Consensus 193 ~~l~~Rf~~-i~~~~p~~~er~~il~~----~~~~~~~-----~~~~~i~~~~l~~~~~~s 243 (951)
|.|..|++. +.|.+.+.+++.+|+.. +.+++.. .-.+.++++++.++++.+
T Consensus 303 PEflgRld~Iv~f~pL~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~ 363 (413)
T TIGR00382 303 PEFIGRLPVIATLEKLDEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKA 363 (413)
T ss_pred HHHhCCCCeEeecCCCCHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhC
Confidence 888889986 88999999999999864 4554432 223568999999999875
No 319
>KOG0651|consensus
Probab=99.33 E-value=3.3e-12 Score=130.22 Aligned_cols=160 Identities=21% Similarity=0.357 Sum_probs=107.7
Q ss_pred ccCCChHHHHHHHHHHHHhhhc----CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRS----GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 515 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~----~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 515 (951)
+.+-|....+..+.+.+...-. ...-.-+|...++||||||||||.+|+++|..+ +.+|+.+..+++.+.
T Consensus 132 ~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~m---g~nfl~v~ss~lv~k--- 205 (388)
T KOG0651|consen 132 ENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATM---GVNFLKVVSSALVDK--- 205 (388)
T ss_pred HHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhc---CCceEEeeHhhhhhh---
Confidence 4566776777777666533211 111011233368999999999999999999999 788888888887764
Q ss_pred hcccCCCCCCcccccc--chhHHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHhhcceeecCCCeEeecC
Q psy14504 516 SRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRTINFR 582 (951)
Q Consensus 516 ~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 582 (951)
|+|++.. +..+..++...+||||+||||.. +..+|.+|..+++.-.-.| ...
T Consensus 206 ---------yiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd------~l~ 270 (388)
T KOG0651|consen 206 ---------YIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFD------TLH 270 (388)
T ss_pred ---------hcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccch------hcc
Confidence 7776543 33344455666799999999854 4678999998887411111 235
Q ss_pred CeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHH
Q psy14504 583 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILS 644 (951)
Q Consensus 583 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~ 644 (951)
.+-+|+|||.+.. +.|+|+ +|+|..+..|-++......
T Consensus 271 rVk~ImatNrpdt------------------------LdpaLlRpGRldrk~~iPlpne~~r~~ 310 (388)
T KOG0651|consen 271 RVKTIMATNRPDT------------------------LDPALLRPGRLDRKVEIPLPNEQARLG 310 (388)
T ss_pred cccEEEecCCccc------------------------cchhhcCCccccceeccCCcchhhcee
Confidence 6679999997653 345555 6888888887655544333
No 320
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=8.7e-12 Score=138.01 Aligned_cols=165 Identities=17% Similarity=0.262 Sum_probs=110.4
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC-ceE-----------Eeccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-SII-----------RIDMS 507 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~-~~~-----------~~~~~ 507 (951)
..|+||+.+++.+.+++...+.. +.+||+||+|+||+++|.++|+.+++... ... .-+|.
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~rl~--------HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~ 90 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGRLH--------HAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHP 90 (365)
T ss_pred hhccChHHHHHHHHHHHHcCCCC--------ceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCCh
Confidence 56899999999999998865422 36999999999999999999999965331 000 00111
Q ss_pred ccc---c-hhchhcccCC---CC-----CCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhccee
Q psy14504 508 EFI---E-KHSISRLIGA---PP-----GYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRL 571 (951)
Q Consensus 508 ~~~---~-~~~~~~l~g~---~~-----~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~ 571 (951)
... . .+.--..+.. .. ..++.++.+.+...+. ...+.|++|||+|.+++..+|.|++.+++
T Consensus 91 ~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEe--- 167 (365)
T PRK07471 91 VARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEE--- 167 (365)
T ss_pred HHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhc---
Confidence 000 0 0000000100 00 1122222233333332 34568999999999999999999999997
Q ss_pred ecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHH
Q psy14504 572 TDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI 648 (951)
Q Consensus 572 ~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~ 648 (951)
+..+++||++|+.... +.|.+.+|| ..+.|+|++.+++.+++..
T Consensus 168 --------pp~~~~~IL~t~~~~~------------------------llpti~SRc-~~i~l~~l~~~~i~~~L~~ 211 (365)
T PRK07471 168 --------PPARSLFLLVSHAPAR------------------------LLPTIRSRC-RKLRLRPLAPEDVIDALAA 211 (365)
T ss_pred --------CCCCeEEEEEECCchh------------------------chHHhhccc-eEEECCCCCHHHHHHHHHH
Confidence 5567788888876432 357788999 6999999999999988654
No 321
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.32 E-value=2.2e-11 Score=135.60 Aligned_cols=172 Identities=20% Similarity=0.237 Sum_probs=122.2
Q ss_pred CCccccHHHHHHHHHHHH-cCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCCCc--------------CCCeEEEEe
Q psy14504 44 DPVIGRDDEIRRAIQVLQ-RRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNSL--------------LSKKILLLD 107 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~-~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~~~--------------~~~~~~~~~ 107 (951)
+++++.+..+..+..+.. ....+| +||+||||+|||++|.++|+.+.+....... ....+++++
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~ 80 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELN 80 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEec
Confidence 367888888888888776 455677 9999999999999999999999754321111 124677777
Q ss_pred hhhhhcCccccccHHHHHHHHHHHHHhc---CCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecc
Q psy14504 108 IALLLAGTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTL 182 (951)
Q Consensus 108 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~ 182 (951)
.++... ..-....++.+....... ++..|++|||+|.|.. ++++.++..+|. ...++|.+||.
T Consensus 81 ~s~~~~----~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~--------~A~nallk~lEep~~~~~~il~~n~ 148 (325)
T COG0470 81 PSDLRK----IDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTE--------DAANALLKTLEEPPKNTRFILITND 148 (325)
T ss_pred ccccCC----CcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhH--------HHHHHHHHHhccCCCCeEEEEEcCC
Confidence 655431 112344566666655423 3467999999999954 788889999874 57889999997
Q ss_pred hHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 183 NEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 183 ~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
+. .+-+.++|||..++|.+|+.......++ +.++..++..+.+++
T Consensus 149 ~~-----~il~tI~SRc~~i~f~~~~~~~~i~~~e---------------~~~l~~i~~~~~gd~ 193 (325)
T COG0470 149 PS-----KILPTIRSRCQRIRFKPPSRLEAIAWLE---------------DQGLEEIAAVAEGDA 193 (325)
T ss_pred hh-----hccchhhhcceeeecCCchHHHHHHHhh---------------ccchhHHHHHHHHHH
Confidence 76 7888999999999999865544443332 344555666666665
No 322
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=5.6e-11 Score=135.75 Aligned_cols=203 Identities=15% Similarity=0.153 Sum_probs=127.8
Q ss_pred cCCCCCcc-ccHH--HHHHHHHHHHcC--CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14504 40 LGKLDPVI-GRDD--EIRRAIQVLQRR--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 114 (951)
Q Consensus 40 p~~l~~lv-G~~~--~i~~l~~~l~~~--~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (951)
+-+|+.++ |... .+..+..+...+ ..++++|+|++|+|||+|++++++.+.... .+..++.++...+..
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~-----~~~~v~yv~~~~f~~- 184 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNF-----SDLKVSYMSGDEFAR- 184 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhC-----CCCeEEEEEHHHHHH-
Confidence 45899887 5433 344444443332 235688999999999999999999875321 156777777655541
Q ss_pred ccccccHH---HHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhc
Q psy14504 115 TKYRGEFE---DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEK 191 (951)
Q Consensus 115 ~~~~g~~~---~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~ 191 (951)
....... ..+..+..... ..-+|+|||++.+.... .........+....+.++. +|.|++.++ ...-.+
T Consensus 185 -~~~~~l~~~~~~~~~~~~~~~---~~dvLiIDDiq~l~~k~--~~~e~lf~l~N~~~~~~k~-iIltsd~~P-~~l~~l 256 (450)
T PRK14087 185 -KAVDILQKTHKEIEQFKNEIC---QNDVLIIDDVQFLSYKE--KTNEIFFTIFNNFIENDKQ-LFFSSDKSP-ELLNGF 256 (450)
T ss_pred -HHHHHHHHhhhHHHHHHHHhc---cCCEEEEeccccccCCH--HHHHHHHHHHHHHHHcCCc-EEEECCCCH-HHHhhc
Confidence 1111111 11222222222 23489999999885321 1112344444555566664 444444432 123356
Q ss_pred CHHHhhcce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHH
Q psy14504 192 DAAFERRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 264 (951)
Q Consensus 192 ~~~l~~Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 264 (951)
++.+.+||. .+.+.+|+.+++.+||+..++... ....++++++..++..+.+.+ +.+..++..+.
T Consensus 257 ~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g--l~~~l~~evl~~Ia~~~~gd~------R~L~gaL~~l~ 324 (450)
T PRK14087 257 DNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN--IKQEVTEEAINFISNYYSDDV------RKIKGSVSRLN 324 (450)
T ss_pred cHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC--CCCCCCHHHHHHHHHccCCCH------HHHHHHHHHHH
Confidence 899999996 399999999999999998877532 123699999999999988766 66666666554
No 323
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.32 E-value=3.8e-11 Score=139.13 Aligned_cols=217 Identities=14% Similarity=0.158 Sum_probs=144.5
Q ss_pred hhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-------CCCceEEecccccc
Q psy14504 438 LCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFI 510 (951)
Q Consensus 438 l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~ 510 (951)
..+.+.|.+.-++.|..++...-.+. .|...++++|+||||||.+++.+.+.+-. ....++.++|..+.
T Consensus 753 VPD~LPhREeEIeeLasfL~paIkgs----gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Ls 828 (1164)
T PTZ00112 753 VPKYLPCREKEIKEVHGFLESGIKQS----GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVV 828 (1164)
T ss_pred CCCcCCChHHHHHHHHHHHHHHHhcC----CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccC
Confidence 45678899999999999998665431 22224579999999999999999877621 12457889997766
Q ss_pred chhch-----hcccCCCCCCccccccchhHHHHH-----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEee
Q psy14504 511 EKHSI-----SRLIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTIN 580 (951)
Q Consensus 511 ~~~~~-----~~l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~ 580 (951)
....+ ..+++..+ ..|......+..... .....||+|||||.+....++.|+.+++.-.. .
T Consensus 829 tp~sIYqvI~qqL~g~~P-~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~--------s 899 (1164)
T PTZ00112 829 HPNAAYQVLYKQLFNKKP-PNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTK--------I 899 (1164)
T ss_pred CHHHHHHHHHHHHcCCCC-CccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhc--------c
Confidence 55433 23334432 223222222222222 12346999999999988778889988874111 1
Q ss_pred cCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCChhhHHHHHHHHHHHHHHHHHh
Q psy14504 581 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQLNILKNKLLK 659 (951)
Q Consensus 581 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~~~~~~i~~~~l~~~~~~~~~ 659 (951)
...+++|+++|.-. +...+.|.+.+|+.. .+.|+||+.+++.+|+...+...
T Consensus 900 ~SKLiLIGISNdlD---------------------LperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A------ 952 (1164)
T PTZ00112 900 NSKLVLIAISNTMD---------------------LPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENC------ 952 (1164)
T ss_pred CCeEEEEEecCchh---------------------cchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhC------
Confidence 23577888888421 012345667778743 58999999999999977776542
Q ss_pred cCCccccchHHHHHHHHhcccccccccccccchHHHHHHHH
Q psy14504 660 MNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLK 700 (951)
Q Consensus 660 ~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~ 700 (951)
.-.++++|++++++..... -||++..++.|.++.+
T Consensus 953 ---~gVLdDdAIELIArkVAq~---SGDARKALDILRrAgE 987 (1164)
T PTZ00112 953 ---KEIIDHTAIQLCARKVANV---SGDIRKALQICRKAFE 987 (1164)
T ss_pred ---CCCCCHHHHHHHHHhhhhc---CCHHHHHHHHHHHHHh
Confidence 1358999999999844322 3788888777777664
No 324
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.32 E-value=2.2e-11 Score=133.91 Aligned_cols=156 Identities=17% Similarity=0.293 Sum_probs=108.4
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.++||+.+++.+...+...+. .+.+||+||+|+|||++|+++|+.+.+....- +.+++.. +.
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~~~--------~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~---~h~D~~~------~~ 66 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKNRF--------SHAHIIVGEDGIGKSLLAKEIALKILGKSQQR---EYVDIIE------FK 66 (313)
T ss_pred hhccCcHHHHHHHHHHHHcCCC--------CceEEeECCCCCCHHHHHHHHHHHHcCCCCCC---CCCCeEE------ec
Confidence 5688999999999999865432 23689999999999999999999885432110 0111110 00
Q ss_pred CCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCch
Q psy14504 520 GAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 595 (951)
Q Consensus 520 g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~ 595 (951)
......++.++.+.+.+.+. .+...|++||++|+++.+.+|.|++.||+ +..+++||++|+...
T Consensus 67 ~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEe-----------pp~~t~~il~~~~~~- 134 (313)
T PRK05564 67 PINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEE-----------PPKGVFIILLCENLE- 134 (313)
T ss_pred cccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEeCChH-
Confidence 00001122222233333222 24468999999999999999999999998 667888888886422
Q ss_pred hhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHH
Q psy14504 596 KIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI 648 (951)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~ 648 (951)
.+.|.+.+|| .++.|.+++.+++...+..
T Consensus 135 -----------------------~ll~TI~SRc-~~~~~~~~~~~~~~~~l~~ 163 (313)
T PRK05564 135 -----------------------QILDTIKSRC-QIYKLNRLSKEEIEKFISY 163 (313)
T ss_pred -----------------------hCcHHHHhhc-eeeeCCCcCHHHHHHHHHH
Confidence 3568899999 6999999999999877543
No 325
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.32 E-value=5.1e-11 Score=129.94 Aligned_cols=220 Identities=18% Similarity=0.183 Sum_probs=136.8
Q ss_pred CCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcC----CCCCC---------cCCCeEE-----
Q psy14504 43 LDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIING----EVPNS---------LLSKKIL----- 104 (951)
Q Consensus 43 l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~----~~~~~---------~~~~~~~----- 104 (951)
|..+|||+..+..++..+-.+...+++|.|+||+||||++++++..+... ..|.. ..+|...
T Consensus 3 f~~ivgq~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~ 82 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEVRIRVDSQE 82 (337)
T ss_pred ccccccHHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHHhhhhhccc
Confidence 77899999999998877777778899999999999999999999877321 01110 0000100
Q ss_pred -----E-----EehhhhhcCccccccH--HHHH--------HHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhh
Q psy14504 105 -----L-----LDIALLLAGTKYRGEF--EDRL--------KKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNM 164 (951)
Q Consensus 105 -----~-----~~~~~l~~~~~~~g~~--~~~l--------~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~ 164 (951)
. .++-.-.......|.. ...+ ..++.++ .+.+|||||++.+. ...++.
T Consensus 83 ~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A----~~GvL~lDEi~~L~--------~~~Q~~ 150 (337)
T TIGR02030 83 PLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARA----NRGILYIDEVNLLE--------DHLVDV 150 (337)
T ss_pred ccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceec----cCCEEEecChHhCC--------HHHHHH
Confidence 0 0100000001112211 1110 1112222 24599999999984 356677
Q ss_pred hhhhccCC---------------cEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCH-HHHHHHHHHHHHh-----
Q psy14504 165 LKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDI-EETISILRGLQKK----- 222 (951)
Q Consensus 165 L~~~le~~---------------~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~-~er~~il~~~~~~----- 222 (951)
|+..|+.+ ++++|+++|+.+ -.+.+++..||.. +.++.|+. +++.+|++.....
T Consensus 151 Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~e----g~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~ 226 (337)
T TIGR02030 151 LLDVAASGWNVVEREGISIRHPARFVLVGSGNPEE----GELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPH 226 (337)
T ss_pred HHHHHHhCCeEEEECCEEEEcCCCEEEEecccccc----CCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCch
Confidence 77777543 366777777653 2588999999996 89999975 8888888652110
Q ss_pred --------------------hhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhHHhh--cCCchHHHH
Q psy14504 223 --------------------YEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEI--DSKPEIMDK 280 (951)
Q Consensus 223 --------------------~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~--~~~~~~l~~ 280 (951)
.+.-..+.++++++.+++.++...- ..-|+..+.++..|.+.+..+. ...|+++..
T Consensus 227 ~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~--~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~ 304 (337)
T TIGR02030 227 AFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELD--VDGLRGELTLNRAAKALAAFEGRTEVTVDDIRR 304 (337)
T ss_pred hhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHC--CCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHH
Confidence 1112457788888888888776533 2246777788887777766544 445565543
No 326
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.32 E-value=2.1e-11 Score=130.28 Aligned_cols=157 Identities=19% Similarity=0.289 Sum_probs=108.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCC--ccccc----cchhHHHHHhCCCeE
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY--IGYEE----GGYLTEIVRRKPYSL 545 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~--~g~~~----~~~l~~~~~~~~~~v 545 (951)
+++|.||||||||++|+.+|+.+ +.+++++++..-... ..++|...-. .|... .+.+..+. ..+++
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l---~~~~~rV~~~~~l~~---~DliG~~~~~l~~g~~~~~f~~GpL~~A~--~~g~i 137 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARL---NWPCVRVNLDSHVSR---IDLVGKDAIVLKDGKQITEFRDGILPWAL--QHNVA 137 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHH---CCCeEEEEecCCCCh---hhcCCCceeeccCCcceeEEecCcchhHH--hCCeE
Confidence 69999999999999999999999 789999998775443 3455543211 11110 12232222 24588
Q ss_pred EEEccccccCHHHHHHHHHHhh-cceeecC-CCeEeec-CCeEEEEecCCCc-hhhhhhccccHHHHHHHHHHHHHhccC
Q psy14504 546 ILLDEIEKANSDVFNILLQILD-DGRLTDN-RGRTINF-RNTIIVMTSNLGS-DKIKEMEKGDKEIIKLAVMNEVKIYFR 621 (951)
Q Consensus 546 l~iDEid~~~~~~~~~Ll~~le-~g~~~~~-~g~~~~~-~~~iiI~ttn~~~-~~~~~~~~~~~~~~~~~~~~~~~~~f~ 621 (951)
|++||++.++|++++.|+.+|| +|.++.. .+..+.. .+..+|+|+|... ..-...+.. ...++
T Consensus 138 lllDEin~a~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~G-------------t~~l~ 204 (327)
T TIGR01650 138 LCFDEYDAGRPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHG-------------TQQIN 204 (327)
T ss_pred EEechhhccCHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceee-------------eecCC
Confidence 9999999999999999999999 4677754 4666644 4788899999622 110000000 22468
Q ss_pred hhHhhccCcEEEecCCChhhHHHHHHHH
Q psy14504 622 PEFINRIDDIIVFRYLNRKNILSIANIQ 649 (951)
Q Consensus 622 p~l~~R~~~~i~f~~l~~~~~~~i~~~~ 649 (951)
+.+++||-.++.+..+++++-.+|+...
T Consensus 205 ~A~lDRF~i~~~~~Yp~~e~E~~Il~~~ 232 (327)
T TIGR01650 205 QAQMDRWSIVTTLNYLEHDNEAAIVLAK 232 (327)
T ss_pred HHHHhheeeEeeCCCCCHHHHHHHHHhh
Confidence 8999999656789999999988886543
No 327
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=99.32 E-value=4.5e-12 Score=121.51 Aligned_cols=137 Identities=20% Similarity=0.324 Sum_probs=100.2
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCC
Q psy14504 443 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAP 522 (951)
Q Consensus 443 ~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 522 (951)
+|.+.+++.+...+...... ..+++++|++||||+++|++|+........+++.++|....
T Consensus 1 vG~S~~~~~l~~~l~~~a~~-------~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS-------SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS-------SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCC-------CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc------------
Confidence 47778888888888776522 12699999999999999999999886656677777765432
Q ss_pred CCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhcc
Q psy14504 523 PGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 602 (951)
Q Consensus 523 ~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~ 602 (951)
.+.+..+.+++|||+|+|.++++.|..|+..++.. ...++.+|+++..+...+.+
T Consensus 62 ------------~~~l~~a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~----------~~~~~RlI~ss~~~l~~l~~--- 116 (138)
T PF14532_consen 62 ------------AELLEQAKGGTLYLKNIDRLSPEAQRRLLDLLKRQ----------ERSNVRLIASSSQDLEELVE--- 116 (138)
T ss_dssp ------------HHHHHHCTTSEEEEECGCCS-HHHHHHHHHHHHHC----------TTTTSEEEEEECC-CCCHHH---
T ss_pred ------------HHHHHHcCCCEEEECChHHCCHHHHHHHHHHHHhc----------CCCCeEEEEEeCCCHHHHhh---
Confidence 23455568899999999999999999999999862 23567899999887765433
Q ss_pred ccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCC
Q psy14504 603 GDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYL 637 (951)
Q Consensus 603 ~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l 637 (951)
.+.|.++|+.|++. .|.+|||
T Consensus 117 --------------~~~~~~~L~~~l~~~~i~lPpL 138 (138)
T PF14532_consen 117 --------------EGRFSPDLYYRLSQLEIHLPPL 138 (138)
T ss_dssp --------------HSTHHHHHHHHCSTCEEEE---
T ss_pred --------------ccchhHHHHHHhCCCEEeCCCC
Confidence 45789999999975 7777775
No 328
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.31 E-value=1.6e-11 Score=150.32 Aligned_cols=182 Identities=17% Similarity=0.260 Sum_probs=121.8
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC-------CceEEeccccccch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE-------ESIIRIDMSEFIEK 512 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~-------~~~~~~~~~~~~~~ 512 (951)
+.++||++.++.+...+.+.. ..+++|+||||||||++|+.+|+.+.... ..++.++++.+..
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~---------~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~a- 256 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRR---------QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQA- 256 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCC---------cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhc-
Confidence 578999999888888776433 23689999999999999999999874322 2355555544321
Q ss_pred hchhcccCCCCCCcccccc--chhHHHHH-hCCCeEEEEccccccCH--------HHHHHHHHHhhcceeecCCCeEeec
Q psy14504 513 HSISRLIGAPPGYIGYEEG--GYLTEIVR-RKPYSLILLDEIEKANS--------DVFNILLQILDDGRLTDNRGRTINF 581 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~-~~~~~vl~iDEid~~~~--------~~~~~Ll~~le~g~~~~~~g~~~~~ 581 (951)
...|.|.-+. +.+...+. ...+.||||||++.+.. ++-+.|+..++.|.
T Consensus 257 ---------g~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G~----------- 316 (852)
T TIGR03345 257 ---------GASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARGE----------- 316 (852)
T ss_pred ---------ccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCCC-----------
Confidence 1124443322 22233332 34578999999998852 34457888888764
Q ss_pred CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcC
Q psy14504 582 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMN 661 (951)
Q Consensus 582 ~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~ 661 (951)
..+|.||+...- .. .-...|+|.+|| .+|.+++++.++..+|++.....+... +
T Consensus 317 --l~~IgaTT~~e~--~~-----------------~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~---~- 370 (852)
T TIGR03345 317 --LRTIAATTWAEY--KK-----------------YFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKH---H- 370 (852)
T ss_pred --eEEEEecCHHHH--hh-----------------hhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhc---C-
Confidence 448888884210 00 012478999999 599999999999999975544443321 2
Q ss_pred CccccchHHHHHHHHhc
Q psy14504 662 MDLKISKAALKKISNIG 678 (951)
Q Consensus 662 ~~l~~~~~~~~~L~~~~ 678 (951)
.+.++++++..++..+
T Consensus 371 -~v~i~d~al~~~~~ls 386 (852)
T TIGR03345 371 -GVLILDEAVVAAVELS 386 (852)
T ss_pred -CCeeCHHHHHHHHHHc
Confidence 2778888888887743
No 329
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.31 E-value=3.4e-11 Score=132.64 Aligned_cols=156 Identities=17% Similarity=0.129 Sum_probs=113.1
Q ss_pred CCCCccc-cHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCCC--------------cCCCeEEE
Q psy14504 42 KLDPVIG-RDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILL 105 (951)
Q Consensus 42 ~l~~lvG-~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~~--------------~~~~~~~~ 105 (951)
.++.++| |+.+++.+...+..++.+|. ||+||+|+|||++|+.+|+.+.+...... ....++..
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~ 82 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHL 82 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEE
Confidence 3567888 88899999999888877776 89999999999999999999865321100 00112222
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEee
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGAT 180 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at 180 (951)
+.... . . -....++.+.+.+. ..++..|++|||+|.|. .+++|.|+..||. +.+++|.+|
T Consensus 83 i~~~~----~-~--i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~--------~~a~NaLLK~LEEPp~~~~~Il~t 147 (329)
T PRK08058 83 VAPDG----Q-S--IKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMT--------ASAANSLLKFLEEPSGGTTAILLT 147 (329)
T ss_pred ecccc----c-c--CCHHHHHHHHHHHhhCCcccCceEEEeehHhhhC--------HHHHHHHHHHhcCCCCCceEEEEe
Confidence 22110 0 0 11234566665554 22345699999999994 4688899999986 678888888
Q ss_pred cchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHH
Q psy14504 181 TLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILR 217 (951)
Q Consensus 181 ~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~ 217 (951)
+.+. .+.|+++|||..++|.+|+.++....|+
T Consensus 148 ~~~~-----~ll~TIrSRc~~i~~~~~~~~~~~~~L~ 179 (329)
T PRK08058 148 ENKH-----QILPTILSRCQVVEFRPLPPESLIQRLQ 179 (329)
T ss_pred CChH-----hCcHHHHhhceeeeCCCCCHHHHHHHHH
Confidence 8776 8899999999999999999999877765
No 330
>PRK04132 replication factor C small subunit; Provisional
Probab=99.31 E-value=2.1e-11 Score=145.80 Aligned_cols=161 Identities=19% Similarity=0.256 Sum_probs=129.6
Q ss_pred EEEc--CCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcC-----CCeEE
Q psy14504 69 VLIG--EPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQ-----KDIII 141 (951)
Q Consensus 69 LL~G--ppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~-----~~~iL 141 (951)
+..| |++.||||+|+++|+.+...+ .+.+++++|.++.. | ...++.++..+.... +..|+
T Consensus 568 ~~~G~lPh~lGKTT~A~ala~~l~g~~-----~~~~~lElNASd~r------g--id~IR~iIk~~a~~~~~~~~~~KVv 634 (846)
T PRK04132 568 FIGGNLPTVLHNTTAALALARELFGEN-----WRHNFLELNASDER------G--INVIREKVKEFARTKPIGGASFKII 634 (846)
T ss_pred hhcCCCCCcccHHHHHHHHHHhhhccc-----ccCeEEEEeCCCcc------c--HHHHHHHHHHHHhcCCcCCCCCEEE
Confidence 5668 999999999999999974321 24578889886532 1 124566665543111 23699
Q ss_pred EEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHH
Q psy14504 142 FIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL 219 (951)
Q Consensus 142 ~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~ 219 (951)
||||+|.|.. ++++.|+..||. +.+++|++||++. .+.++++|||..+.|++|+.++....|+.+
T Consensus 635 IIDEaD~Lt~--------~AQnALLk~lEep~~~~~FILi~N~~~-----kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I 701 (846)
T PRK04132 635 FLDEADALTQ--------DAQQALRRTMEMFSSNVRFILSCNYSS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLRYI 701 (846)
T ss_pred EEECcccCCH--------HHHHHHHHHhhCCCCCeEEEEEeCChh-----hCchHHhhhceEEeCCCCCHHHHHHHHHHH
Confidence 9999999953 678899999994 7899999999987 889999999999999999999999999988
Q ss_pred HHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q psy14504 220 QKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 220 ~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 265 (951)
+.+ +++.++++++..++..+.+.+ +.++++++.++.
T Consensus 702 ~~~----Egi~i~~e~L~~Ia~~s~GDl------R~AIn~Lq~~~~ 737 (846)
T PRK04132 702 AEN----EGLELTEEGLQAILYIAEGDM------RRAINILQAAAA 737 (846)
T ss_pred HHh----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHHH
Confidence 874 468899999999999999987 999999987764
No 331
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.31 E-value=2.6e-10 Score=127.37 Aligned_cols=214 Identities=14% Similarity=0.128 Sum_probs=121.4
Q ss_pred CccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccH-HH
Q psy14504 45 PVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF-ED 123 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~ 123 (951)
.++|++++++.+...+... .|+||.||||||||++|+++++.+.... +.....+.+. ..+++. |.. -.
T Consensus 21 ~i~gre~vI~lll~aalag--~hVLL~GpPGTGKT~LAraLa~~~~~~~-~F~~~~~~ft--tp~DLf------G~l~i~ 89 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQNAR-AFEYLMTRFS--TPEEVF------GPLSIQ 89 (498)
T ss_pred hccCcHHHHHHHHHHHccC--CCEEEECCCChhHHHHHHHHHHHhcccC-cceeeeeeec--CcHHhc------CcHHHh
Confidence 5889999999999876544 8999999999999999999999763221 1111111110 112221 110 00
Q ss_pred HH--HHHHHHHHhc--CCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCc------------EEEEEeecchHHHH
Q psy14504 124 RL--KKILKEISNN--QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE------------LHCIGATTLNEYRQ 187 (951)
Q Consensus 124 ~l--~~~~~~a~~~--~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~------------i~vI~at~~~~~~~ 187 (951)
.. ..-|...... ....+||+|||+.+.+ ..++.|+..|+.+. ..+++|||+.+ .
T Consensus 90 ~~~~~g~f~r~~~G~L~~A~lLfLDEI~rasp--------~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LP--E 159 (498)
T PRK13531 90 ALKDEGRYQRLTSGYLPEAEIVFLDEIWKAGP--------AILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELP--E 159 (498)
T ss_pred hhhhcCchhhhcCCccccccEEeecccccCCH--------HHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCc--c
Confidence 00 0111111100 0112899999997743 67778888884322 23455555432 0
Q ss_pred hhhcCHHHhhcceE-EEeeCCC-HHHHHHHHHHHHHh--h-----------------hhhcCCCCChHHHHHHHHHhhhh
Q psy14504 188 YIEKDAAFERRFQK-ILVEEPD-IEETISILRGLQKK--Y-----------------EVHHGVEITDPAIVAASELSYRY 246 (951)
Q Consensus 188 ~~~~~~~l~~Rf~~-i~~~~p~-~~er~~il~~~~~~--~-----------------~~~~~~~i~~~~l~~~~~~s~~~ 246 (951)
.-...+++..||.. +.+++|+ .++-.++|...... . ..-..+.+++.+.+++..+...-
T Consensus 160 ~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~~~~~~vis~eel~~lq~~v~~V~v~d~v~eyI~~L~~~l 239 (498)
T PRK13531 160 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPASLQITDEEYQQWQKEIGKITLPDHVFELIFQLRQQL 239 (498)
T ss_pred cCCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCCCcccCCCCHHHHHHHHHHhcceeCCHHHHHHHHHHHHHH
Confidence 11233589999975 8899997 45557777542110 0 01234667777777777765421
Q ss_pred --cc--cCCCchhHHHHHHHHHHHhHH--hhcCCchHHH
Q psy14504 247 --IS--DRFMPDKAIDLIDEAAAKIKI--EIDSKPEIMD 279 (951)
Q Consensus 247 --~~--~~~~p~~a~~ll~~a~~~~~~--~~~~~~~~l~ 279 (951)
.. ....|+..+.++..+.+.+.. +....|+++.
T Consensus 240 r~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~ 278 (498)
T PRK13531 240 DALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI 278 (498)
T ss_pred hcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH
Confidence 11 114567777776666555443 4455677665
No 332
>PRK05642 DNA replication initiation factor; Validated
Probab=99.31 E-value=4.3e-11 Score=125.34 Aligned_cols=159 Identities=14% Similarity=0.265 Sum_probs=111.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEcc
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 550 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDE 550 (951)
.+++|+||+|||||+|++++++.+...+..++++++.++... ...+.+.++.. .+|+||+
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~------------------~~~~~~~~~~~--d~LiiDD 105 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR------------------GPELLDNLEQY--ELVCLDD 105 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh------------------hHHHHHhhhhC--CEEEEec
Confidence 368999999999999999999987655667788887765431 01223333433 5999999
Q ss_pred ccccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhcc
Q psy14504 551 IEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI 628 (951)
Q Consensus 551 id~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~ 628 (951)
++.+. +..+..|+.+++. ....+..+|+|++.++..+. .+.|++.+|+
T Consensus 106 i~~~~~~~~~~~~Lf~l~n~----------~~~~g~~ilits~~~p~~l~--------------------~~~~~L~SRl 155 (234)
T PRK05642 106 LDVIAGKADWEEALFHLFNR----------LRDSGRRLLLAASKSPRELP--------------------IKLPDLKSRL 155 (234)
T ss_pred hhhhcCChHHHHHHHHHHHH----------HHhcCCEEEEeCCCCHHHcC--------------------ccCccHHHHH
Confidence 99775 4667778888874 11234567888887665431 2468999999
Q ss_pred C--cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 629 D--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 629 ~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
. .++.+.+++.+++.++++... ...+ +.++++++++|++..- ..+|.+.+.
T Consensus 156 ~~gl~~~l~~~~~e~~~~il~~ka-------~~~~--~~l~~ev~~~L~~~~~---~d~r~l~~~ 208 (234)
T PRK05642 156 TLALVFQMRGLSDEDKLRALQLRA-------SRRG--LHLTDEVGHFILTRGT---RSMSALFDL 208 (234)
T ss_pred hcCeeeecCCCCHHHHHHHHHHHH-------HHcC--CCCCHHHHHHHHHhcC---CCHHHHHHH
Confidence 4 488899999999999966433 2224 7899999999998431 224444444
No 333
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.30 E-value=1.1e-11 Score=128.08 Aligned_cols=168 Identities=14% Similarity=0.252 Sum_probs=109.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhcc--CCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEE
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFN--NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 548 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~i 548 (951)
.+++++||+|+|||+|.+++++.+.. .+..++++++.++........- ......+...++ ...+|+|
T Consensus 35 ~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~---------~~~~~~~~~~~~--~~DlL~i 103 (219)
T PF00308_consen 35 NPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALR---------DGEIEEFKDRLR--SADLLII 103 (219)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHH---------TTSHHHHHHHHC--TSSEEEE
T ss_pred CceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHH---------cccchhhhhhhh--cCCEEEE
Confidence 36899999999999999999998743 4667889988887654221110 011112223333 4579999
Q ss_pred ccccccCH--HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh
Q psy14504 549 DEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN 626 (951)
Q Consensus 549 DEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~ 626 (951)
|+++.+.. ..+..|+.+++.- ...+..+|+|++..+..+ ..+.|++.+
T Consensus 104 DDi~~l~~~~~~q~~lf~l~n~~----------~~~~k~li~ts~~~P~~l--------------------~~~~~~L~S 153 (219)
T PF00308_consen 104 DDIQFLAGKQRTQEELFHLFNRL----------IESGKQLILTSDRPPSEL--------------------SGLLPDLRS 153 (219)
T ss_dssp ETGGGGTTHHHHHHHHHHHHHHH----------HHTTSEEEEEESS-TTTT--------------------TTS-HHHHH
T ss_pred ecchhhcCchHHHHHHHHHHHHH----------HhhCCeEEEEeCCCCccc--------------------cccChhhhh
Confidence 99999874 4588888888751 123445788888777654 236789999
Q ss_pred ccCc--EEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 627 RIDD--IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 627 R~~~--~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
|+.. ++.+.+++.++..+|+.... ...+ +.++++++++|++.. ...++.+.|.
T Consensus 154 Rl~~Gl~~~l~~pd~~~r~~il~~~a-------~~~~--~~l~~~v~~~l~~~~---~~~~r~L~~~ 208 (219)
T PF00308_consen 154 RLSWGLVVELQPPDDEDRRRILQKKA-------KERG--IELPEEVIEYLARRF---RRDVRELEGA 208 (219)
T ss_dssp HHHCSEEEEE----HHHHHHHHHHHH-------HHTT----S-HHHHHHHHHHT---TSSHHHHHHH
T ss_pred hHhhcchhhcCCCCHHHHHHHHHHHH-------HHhC--CCCcHHHHHHHHHhh---cCCHHHHHHH
Confidence 9954 99999999999999955444 4456 679999999999842 1235555555
No 334
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.30 E-value=1.2e-11 Score=136.11 Aligned_cols=163 Identities=17% Similarity=0.264 Sum_probs=108.3
Q ss_pred ccCCC-hHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC--ceEEeccc---cccchh
Q psy14504 440 KRVVG-QDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMS---EFIEKH 513 (951)
Q Consensus 440 ~~v~G-q~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~---~~~~~~ 513 (951)
..|+| |+.+++.+...+...+. .+.+||+||+|+||+++|+++|+.+++... ...+..|. .+....
T Consensus 5 ~~i~~~q~~~~~~L~~~~~~~~l--------~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~ 76 (329)
T PRK08058 5 EQLTALQPVVVKMLQNSIAKNRL--------SHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGN 76 (329)
T ss_pred HHHHhhHHHHHHHHHHHHHcCCC--------CceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCC
Confidence 44566 99999999999875442 236799999999999999999999865321 11111111 111100
Q ss_pred chh-cccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEE
Q psy14504 514 SIS-RLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVM 588 (951)
Q Consensus 514 ~~~-~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ 588 (951)
... ..+......++.++.+.+.+.+. .+...|++|||+|.++...+|.||+.||+ +..+++||+
T Consensus 77 hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEE-----------Pp~~~~~Il 145 (329)
T PRK08058 77 HPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEE-----------PSGGTTAIL 145 (329)
T ss_pred CCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcC-----------CCCCceEEE
Confidence 000 00000001122222233333332 24468999999999999999999999998 677888999
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHH
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 646 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~ 646 (951)
+|+.. ..+.|.+.+|+ .++.|.+++.+++.+++
T Consensus 146 ~t~~~------------------------~~ll~TIrSRc-~~i~~~~~~~~~~~~~L 178 (329)
T PRK08058 146 LTENK------------------------HQILPTILSRC-QVVEFRPLPPESLIQRL 178 (329)
T ss_pred EeCCh------------------------HhCcHHHHhhc-eeeeCCCCCHHHHHHHH
Confidence 88742 24568899999 79999999999987664
No 335
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.29 E-value=6.3e-12 Score=114.02 Aligned_cols=105 Identities=28% Similarity=0.457 Sum_probs=62.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc-cccchhchhcccCCCCCCccccc-----cchhHHHHHhCCCeE
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS-EFIEKHSISRLIGAPPGYIGYEE-----GGYLTEIVRRKPYSL 545 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~g~~~-----~~~l~~~~~~~~~~v 545 (951)
|+||.|+||+|||++|+++|+.+ +..|.++.+. ++. .+.++|.+. |..... .+.++ ..|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~---~~~f~RIq~tpdll----PsDi~G~~v-~~~~~~~f~~~~GPif-------~~i 65 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL---GLSFKRIQFTPDLL----PSDILGFPV-YDQETGEFEFRPGPIF-------TNI 65 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT---T--EEEEE--TT------HHHHHEEEE-EETTTTEEEEEE-TT--------SSE
T ss_pred CEeeECCCccHHHHHHHHHHHHc---CCceeEEEecCCCC----cccceeeee-eccCCCeeEeecChhh-------hce
Confidence 58999999999999999999998 7788888774 222 223333311 110000 01111 259
Q ss_pred EEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCC-eEEEEecCC
Q psy14504 546 ILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRN-TIIVMTSNL 592 (951)
Q Consensus 546 l~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~-~iiI~ttn~ 592 (951)
+++|||.+++|.+|++||++|+++.++.. |.+....+ .++|+|.|.
T Consensus 66 ll~DEiNrappktQsAlLeam~Er~Vt~~-g~~~~lp~pf~ViATqNp 112 (131)
T PF07726_consen 66 LLADEINRAPPKTQSALLEAMEERQVTID-GQTYPLPDPFFVIATQNP 112 (131)
T ss_dssp EEEETGGGS-HHHHHHHHHHHHHSEEEET-TEEEE--SS-EEEEEE-T
T ss_pred eeecccccCCHHHHHHHHHHHHcCeEEeC-CEEEECCCcEEEEEecCc
Confidence 99999999999999999999999888754 55666655 555556664
No 336
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.29 E-value=5.8e-11 Score=120.58 Aligned_cols=156 Identities=19% Similarity=0.274 Sum_probs=100.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCC----ce-EEeccccccchhc-hhcccCCCCCCccccccchhHHHHHh----
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEE----SI-IRIDMSEFIEKHS-ISRLIGAPPGYIGYEEGGYLTEIVRR---- 540 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~----~~-~~~~~~~~~~~~~-~~~l~g~~~~~~g~~~~~~l~~~~~~---- 540 (951)
+.+||+||+|+|||++|+.+++.+.+... +. ...+|..+..... -...+....+..+.+..+.+.+.+..
T Consensus 15 ~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~~~~ 94 (188)
T TIGR00678 15 HAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRTPQE 94 (188)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccCccc
Confidence 36999999999999999999999865310 00 0000111000000 00000000111222222233333332
Q ss_pred CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhcc
Q psy14504 541 KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYF 620 (951)
Q Consensus 541 ~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 620 (951)
+...|++|||+|++++..++.|+..|++ +..+++||++|+.. ..+
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~-----------~~~~~~~il~~~~~------------------------~~l 139 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEE-----------PPPNTLFILITPSP------------------------EKL 139 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEECCh------------------------HhC
Confidence 4468999999999999999999999997 44577888887742 135
Q ss_pred ChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHh
Q psy14504 621 RPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 677 (951)
Q Consensus 621 ~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 677 (951)
.+.+.+|+ .++.|.|++.+++.+++... + +++++++.|+..
T Consensus 140 ~~~i~sr~-~~~~~~~~~~~~~~~~l~~~-----------g----i~~~~~~~i~~~ 180 (188)
T TIGR00678 140 LPTIRSRC-QVLPFPPLSEEALLQWLIRQ-----------G----ISEEAAELLLAL 180 (188)
T ss_pred hHHHHhhc-EEeeCCCCCHHHHHHHHHHc-----------C----CCHHHHHHHHHH
Confidence 67889999 69999999999998885543 3 568888888774
No 337
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.29 E-value=2.8e-11 Score=137.70 Aligned_cols=172 Identities=16% Similarity=0.291 Sum_probs=117.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEcc
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 550 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDE 550 (951)
.+++|+||||+|||+|++++++.+...+..+++++..++..... ..+ .. + ....+.... ...++|+|||
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~-~~l-~~-----~--~~~~f~~~~--~~~dvLiIDD 210 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLV-SAI-RS-----G--EMQRFRQFY--RNVDALFIED 210 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHH-HHH-hc-----c--hHHHHHHHc--ccCCEEEEcc
Confidence 46999999999999999999999866667888888766544211 101 00 0 001111122 3457999999
Q ss_pred ccccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhcc
Q psy14504 551 IEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI 628 (951)
Q Consensus 551 id~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~ 628 (951)
++.+. ...+..|+.+++.- ......+|+||+..+..+ ..+.+.+.+||
T Consensus 211 iq~l~~k~~~qeelf~l~N~l----------~~~~k~IIlts~~~p~~l--------------------~~l~~rL~SR~ 260 (445)
T PRK12422 211 IEVFSGKGATQEEFFHTFNSL----------HTEGKLIVISSTCAPQDL--------------------KAMEERLISRF 260 (445)
T ss_pred hhhhcCChhhHHHHHHHHHHH----------HHCCCcEEEecCCCHHHH--------------------hhhHHHHHhhh
Confidence 99985 35677777777631 012235788888766543 23567888999
Q ss_pred C--cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHH
Q psy14504 629 D--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSIL 698 (951)
Q Consensus 629 ~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~ 698 (951)
. .++.+.|++.+++.+|++..+.. .+ +.++++++++|+... ..++|.+.|+ |.++
T Consensus 261 ~~Gl~~~l~~pd~e~r~~iL~~k~~~-------~~--~~l~~evl~~la~~~---~~dir~L~g~---l~~l 317 (445)
T PRK12422 261 EWGIAIPLHPLTKEGLRSFLERKAEA-------LS--IRIEETALDFLIEAL---SSNVKSLLHA---LTLL 317 (445)
T ss_pred cCCeEEecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhc---CCCHHHHHHH---HHHH
Confidence 5 69999999999999996655533 34 789999999999843 2456777777 5554
No 338
>KOG0740|consensus
Probab=99.28 E-value=1.9e-11 Score=133.82 Aligned_cols=198 Identities=17% Similarity=0.219 Sum_probs=133.9
Q ss_pred HhhccCCChHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh
Q psy14504 437 LLCKRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH 513 (951)
Q Consensus 437 ~l~~~v~Gq~~~~~~l~~~~~~~~~---~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~ 513 (951)
.....+.|.+.+++.+...+..... .+..-+.|...+||.||||+|||+|+++||.++ +..|..+..+.+..+
T Consensus 150 v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~---~atff~iSassLtsK- 225 (428)
T KOG0740|consen 150 VGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATES---GATFFNISASSLTSK- 225 (428)
T ss_pred ccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhh---cceEeeccHHHhhhh-
Confidence 4456778888888888777654322 011122333479999999999999999999998 778888888877765
Q ss_pred chhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHhhcceeecCCCeEee
Q psy14504 514 SISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRTIN 580 (951)
Q Consensus 514 ~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~ 580 (951)
|+|..+. +.++..++...++|+||||+|++ ++.....+|--++.+. . ..
T Consensus 226 -----------~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~-s------~~ 287 (428)
T KOG0740|consen 226 -----------YVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKN-S------AP 287 (428)
T ss_pred -----------ccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhcccc-C------CC
Confidence 7887754 66677778889999999999864 2333333333333211 1 12
Q ss_pred cCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhc
Q psy14504 581 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 660 (951)
Q Consensus 581 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~ 660 (951)
-.++++|.|||.+... ...++.||..++.++.++.+....++...|.+ .
T Consensus 288 ~drvlvigaTN~P~e~------------------------Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~-------~ 336 (428)
T KOG0740|consen 288 DDRVLVIGATNRPWEL------------------------DEAARRRFVKRLYIPLPDYETRSLLWKQLLKE-------Q 336 (428)
T ss_pred CCeEEEEecCCCchHH------------------------HHHHHHHhhceeeecCCCHHHHHHHHHHHHHh-------C
Confidence 2367888899986642 34566688788889999999999996666644 2
Q ss_pred CCccccchHHHHHHHHhcccccccccccccc
Q psy14504 661 NMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 661 ~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
+ -.+.+.-+..|++ ....|+-+||-.+
T Consensus 337 ~--~~l~~~d~~~l~~--~Tegysgsdi~~l 363 (428)
T KOG0740|consen 337 P--NGLSDLDISLLAK--VTEGYSGSDITAL 363 (428)
T ss_pred C--CCccHHHHHHHHH--HhcCcccccHHHH
Confidence 2 3455566666666 3334666776655
No 339
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.28 E-value=2.2e-10 Score=126.84 Aligned_cols=171 Identities=19% Similarity=0.352 Sum_probs=114.1
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc-
Q psy14504 441 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI- 519 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~- 519 (951)
.+++.+..++.+...+.... +++|+||||||||++|+.+|..+.+. ..+..+++..+....+...++
T Consensus 176 d~~i~e~~le~l~~~L~~~~-----------~iil~GppGtGKT~lA~~la~~l~~~-~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 176 DLFIPETTIETILKRLTIKK-----------NIILQGPPGVGKTFVARRLAYLLTGE-KAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred cccCCHHHHHHHHHHHhcCC-----------CEEEECCCCCCHHHHHHHHHHHhcCC-cccceeeEEeecccccHHHHhc
Confidence 46677777777777776322 69999999999999999999988643 244556666666666666666
Q ss_pred CCCCCCcccccc-chhHHHH---Hh--CCCeEEEEccccccCHH-HHHHHHHHhhcce------ee----cCCC-eEeec
Q psy14504 520 GAPPGYIGYEEG-GYLTEIV---RR--KPYSLILLDEIEKANSD-VFNILLQILDDGR------LT----DNRG-RTINF 581 (951)
Q Consensus 520 g~~~~~~g~~~~-~~l~~~~---~~--~~~~vl~iDEid~~~~~-~~~~Ll~~le~g~------~~----~~~g-~~~~~ 581 (951)
|..++++|+... +.+.+++ .. ..+.|||||||++.+.+ +...|+++||.+. +. ...+ .-.-.
T Consensus 244 G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP 323 (459)
T PRK11331 244 GYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVP 323 (459)
T ss_pred ccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCC
Confidence 666667776543 3333332 22 24689999999999965 6889999998531 11 1111 12234
Q ss_pred CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecC-CChhhHHH
Q psy14504 582 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRY-LNRKNILS 644 (951)
Q Consensus 582 ~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~-l~~~~~~~ 644 (951)
.|+.||+|.|.....+ ..++.+|..|| ..|.+.| ++.+.+.+
T Consensus 324 ~Nl~IIgTMNt~Drs~--------------------~~lD~AlrRRF-~fi~i~p~~~~~~~~~ 366 (459)
T PRK11331 324 ENVYIIGLMNTADRSL--------------------AVVDYALRRRF-SFIDIEPGFDTPQFRN 366 (459)
T ss_pred CCeEEEEecCccccch--------------------hhccHHHHhhh-heEEecCCCChHHHHH
Confidence 7899999999754321 13678999999 5677766 55444443
No 340
>KOG0732|consensus
Probab=99.28 E-value=4.1e-11 Score=142.56 Aligned_cols=231 Identities=19% Similarity=0.283 Sum_probs=144.1
Q ss_pred ccCCChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce--EEeccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDMSEF 509 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~~~~ 509 (951)
..|-|.+.++..+.+.+... ..++.+|+ .+||+||||||||.+|+++|..+-.....+ ..-+..+.
T Consensus 265 d~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPr----gvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~ 340 (1080)
T KOG0732|consen 265 DSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPR----GVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADC 340 (1080)
T ss_pred cccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCc----ceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchh
Confidence 44556666666666655321 22333333 599999999999999999999884433222 22223332
Q ss_pred cchhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHhhcceeecCCC
Q psy14504 510 IEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRG 576 (951)
Q Consensus 510 ~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g 576 (951)
.+ .|+|..+. +.+++.++...++|+||||||.++| ++..+||.+|+.- +
T Consensus 341 ls------------kwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGl---d--- 402 (1080)
T KOG0732|consen 341 LS------------KWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGL---D--- 402 (1080)
T ss_pred hc------------cccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCC---C---
Confidence 22 26776654 6778888888899999999996554 7889999999851 1
Q ss_pred eEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhH--hhccCcEEEecCCChhhHHHHHHHHHHHHH
Q psy14504 577 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF--INRIDDIIVFRYLNRKNILSIANIQLNILK 654 (951)
Q Consensus 577 ~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l--~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~ 654 (951)
....+++|.+||.+.. ..|++ -+|||..+.|+-++.++..+|+...-..
T Consensus 403 ---sRgqVvvigATnRpda------------------------~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrk-- 453 (1080)
T KOG0732|consen 403 ---SRGQVVVIGATNRPDA------------------------IDPALRRPGRFDREFYFPLPDVDARAKILDIHTRK-- 453 (1080)
T ss_pred ---CCCceEEEcccCCccc------------------------cchhhcCCcccceeEeeeCCchHHHHHHHHHhccC--
Confidence 2356778999997553 34566 3899999999999999999985433221
Q ss_pred HHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeec--ccccCCcceEehhHHHHH
Q psy14504 655 NKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFL--GDLINKGPQSLDTLRMVY 732 (951)
Q Consensus 655 ~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~--gd~~~~g~~~~~~l~~~~ 732 (951)
.. -.+....+.+|+. -...||-.|+...+ -+..|..+.-..+ +.+.. +=.+|-...++++=+|+.
T Consensus 454 -----w~--~~i~~~l~~~la~--~t~gy~gaDlkaLC--TeAal~~~~r~~P--q~y~s~~kl~~d~~~ikV~~~~f~~ 520 (1080)
T KOG0732|consen 454 -----WE--PPISRELLLWLAE--ETSGYGGADLKALC--TEAALIALRRSFP--QIYSSSDKLLIDVALIKVEVRDFVE 520 (1080)
T ss_pred -----CC--CCCCHHHHHHHHH--hccccchHHHHHHH--HHHhhhhhccccC--eeecccccccccchhhhhhhHhhhh
Confidence 12 4566677777777 33445555644331 1222333322222 11111 112444555666667777
Q ss_pred hc
Q psy14504 733 SM 734 (951)
Q Consensus 733 ~~ 734 (951)
++
T Consensus 521 A~ 522 (1080)
T KOG0732|consen 521 AM 522 (1080)
T ss_pred hh
Confidence 66
No 341
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.27 E-value=2.7e-11 Score=138.35 Aligned_cols=173 Identities=17% Similarity=0.241 Sum_probs=115.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEE
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 548 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~i 548 (951)
.+++|+||||||||+|++++++.+... +..++++++.++....... + .. .....+...++. ..+|+|
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~-~-~~-------~~~~~~~~~~~~--~dlLii 205 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNA-L-RN-------NKMEEFKEKYRS--VDLLLI 205 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHH-H-Hc-------CCHHHHHHHHHh--CCEEEE
Confidence 368999999999999999999988543 5678888877665421110 0 00 011123333333 469999
Q ss_pred ccccccCH--HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh
Q psy14504 549 DEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN 626 (951)
Q Consensus 549 DEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~ 626 (951)
||++.+.. ..+..|+.+++.- ...+..+|+|+|..+..+ ..+.+.+.+
T Consensus 206 DDi~~l~~~~~~~~~l~~~~n~~----------~~~~~~iiits~~~p~~l--------------------~~l~~~l~S 255 (405)
T TIGR00362 206 DDIQFLAGKERTQEEFFHTFNAL----------HENGKQIVLTSDRPPKEL--------------------PGLEERLRS 255 (405)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHH----------HHCCCCEEEecCCCHHHH--------------------hhhhhhhhh
Confidence 99998753 4677777777631 112334778888766543 124677889
Q ss_pred ccCc--EEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHH
Q psy14504 627 RIDD--IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLS 696 (951)
Q Consensus 627 R~~~--~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~ 696 (951)
|+.. ++.|.+++.+++.+|++..+.. .+ +.++++++++|+... ...+|++.|.+..+.
T Consensus 256 Rl~~g~~v~i~~pd~~~r~~il~~~~~~-------~~--~~l~~e~l~~ia~~~---~~~~r~l~~~l~~l~ 315 (405)
T TIGR00362 256 RFEWGLVVDIEPPDLETRLAILQKKAEE-------EG--LELPDEVLEFIAKNI---RSNVRELEGALNRLL 315 (405)
T ss_pred hccCCeEEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhc---CCCHHHHHHHHHHHH
Confidence 9953 8999999999999996665543 33 788999999999843 234677777744433
No 342
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.27 E-value=3.5e-11 Score=143.80 Aligned_cols=133 Identities=21% Similarity=0.385 Sum_probs=99.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccc--cchhHHHHHhCCCeEEEEc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLD 549 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~iD 549 (951)
+++|+||||||||++|+++|..+ +.+|+.++++++... +.|... .+.++..++...+||||||
T Consensus 187 gill~G~~G~GKt~~~~~~a~~~---~~~f~~is~~~~~~~------------~~g~~~~~~~~~f~~a~~~~P~IifID 251 (644)
T PRK10733 187 GVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM------------FVGVGASRVRDMFEQAKKAAPCIIFID 251 (644)
T ss_pred cEEEECCCCCCHHHHHHHHHHHc---CCCEEEEehHHhHHh------------hhcccHHHHHHHHHHHHhcCCcEEEeh
Confidence 59999999999999999999988 778999988876542 223222 2345555666778999999
Q ss_pred cccccCH--------------HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHH
Q psy14504 550 EIEKANS--------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNE 615 (951)
Q Consensus 550 Eid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~ 615 (951)
|+|.+.. .+.+.||..|+. . .....+++|+|||.+.
T Consensus 252 EiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg-~--------~~~~~vivIaaTN~p~--------------------- 301 (644)
T PRK10733 252 EIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDG-F--------EGNEGIIVIAATNRPD--------------------- 301 (644)
T ss_pred hHhhhhhccCCCCCCCchHHHHHHHHHHHhhhc-c--------cCCCCeeEEEecCChh---------------------
Confidence 9998742 356777777763 1 1234678899999643
Q ss_pred HHhccChhHh--hccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 616 VKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 616 ~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
.++|.++ +|||..|.|+.++.++..+|++..+.+
T Consensus 302 ---~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~ 337 (644)
T PRK10733 302 ---VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR 337 (644)
T ss_pred ---hcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhc
Confidence 2456666 599999999999999999998776654
No 343
>KOG1942|consensus
Probab=99.27 E-value=5.1e-11 Score=120.16 Aligned_cols=103 Identities=22% Similarity=0.331 Sum_probs=80.3
Q ss_pred CeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccCh
Q psy14504 543 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 622 (951)
Q Consensus 543 ~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 622 (951)
++||||||++.++-+....|.+.++. .-..++|++||.|...+....+-. --...++
T Consensus 297 PGVLFIDEVhMLDiEcFTyL~kalES------------~iaPivifAsNrG~~~irGt~d~~-----------sPhGip~ 353 (456)
T KOG1942|consen 297 PGVLFIDEVHMLDIECFTYLHKALES------------PIAPIVIFASNRGMCTIRGTEDIL-----------SPHGIPP 353 (456)
T ss_pred CcceEeeehhhhhhHHHHHHHHHhcC------------CCCceEEEecCCcceeecCCcCCC-----------CCCCCCH
Confidence 69999999999999999999999995 234578999998876554321100 0124789
Q ss_pred hHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhc
Q psy14504 623 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 623 ~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
++++|+ .+|...+++++++++|+.. +....+ +.++++++++|...+
T Consensus 354 dllDRl-~Iirt~~y~~~e~r~Ii~~-------Ra~~E~--l~~~e~a~~~l~~~g 399 (456)
T KOG1942|consen 354 DLLDRL-LIIRTLPYDEEEIRQIIKI-------RAQVEG--LQVEEEALDLLAEIG 399 (456)
T ss_pred HHhhhe-eEEeeccCCHHHHHHHHHH-------HHhhhc--ceecHHHHHHHHhhc
Confidence 999999 7999999999999999544 444455 889999999998854
No 344
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.7e-10 Score=124.84 Aligned_cols=210 Identities=19% Similarity=0.226 Sum_probs=144.0
Q ss_pred CccccHHHHHHHHHHHH----cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-------
Q psy14504 45 PVIGRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA------- 113 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~----~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~------- 113 (951)
.+.+++.+++++...+. ...+.|++++||||||||++++.+++++.... .+..++.+||.....
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~-----~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESS-----ANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhh-----ccCceEEEeeeeCCCHHHHHHH
Confidence 48899999988887554 57778899999999999999999999985531 122256666633210
Q ss_pred ------Cccccc-cHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc--CCcEEEEEeecchH
Q psy14504 114 ------GTKYRG-EFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS--RGELHCIGATTLNE 184 (951)
Q Consensus 114 ------~~~~~g-~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le--~~~i~vI~at~~~~ 184 (951)
.....| .....+..+.+.........|+++||+|.|..... +..-.|..... ..++.+|+.+|...
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----~~LY~L~r~~~~~~~~v~vi~i~n~~~ 167 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----EVLYSLLRAPGENKVKVSIIAVSNDDK 167 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----hHHHHHHhhccccceeEEEEEEeccHH
Confidence 111122 22334455555555556788999999999987542 22222222222 34578889888887
Q ss_pred HHHhhhcCHHHhhcceE--EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHH
Q psy14504 185 YRQYIEKDAAFERRFQK--ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 262 (951)
Q Consensus 185 ~~~~~~~~~~l~~Rf~~--i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 262 (951)
+ ...+++.+.++|.. |.|++++.+|...||+.-.+.- ...-.+++.+++.++..+...- +-.+.+++++..
T Consensus 168 ~--~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~--~~~~~~~~~vl~lia~~~a~~~---GDAR~aidilr~ 240 (366)
T COG1474 168 F--LDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG--FSAGVIDDDVLKLIAALVAAES---GDARKAIDILRR 240 (366)
T ss_pred H--HHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh--ccCCCcCccHHHHHHHHHHHcC---ccHHHHHHHHHH
Confidence 6 34679999999974 8999999999999998655531 2345688888888877665433 134778899988
Q ss_pred HHHHhHHhh
Q psy14504 263 AAAKIKIEI 271 (951)
Q Consensus 263 a~~~~~~~~ 271 (951)
|+..+..+.
T Consensus 241 A~eiAe~~~ 249 (366)
T COG1474 241 AGEIAEREG 249 (366)
T ss_pred HHHHHHhhC
Confidence 887666443
No 345
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.27 E-value=2.7e-11 Score=139.92 Aligned_cols=170 Identities=14% Similarity=0.231 Sum_probs=113.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEE
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 548 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~i 548 (951)
.+++|+||||||||+|++++++.+... +..++++++.++..... ..+ . ......+.+.++ ...+|+|
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~-~~~-~-------~~~~~~~~~~~~--~~dlLii 217 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFV-NAL-R-------NNTMEEFKEKYR--SVDVLLI 217 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH-HHH-H-------cCcHHHHHHHHh--cCCEEEE
Confidence 469999999999999999999998543 45677888877654311 100 0 001112333333 3569999
Q ss_pred ccccccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh
Q psy14504 549 DEIEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN 626 (951)
Q Consensus 549 DEid~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~ 626 (951)
||++.+. +..+..|+.+++.- ...+..+|+|+|..+..+. .+.+.+.+
T Consensus 218 DDi~~l~~~~~~~~~l~~~~n~l----------~~~~~~iiits~~~p~~l~--------------------~l~~~l~S 267 (450)
T PRK00149 218 DDIQFLAGKERTQEEFFHTFNAL----------HEAGKQIVLTSDRPPKELP--------------------GLEERLRS 267 (450)
T ss_pred ehhhhhcCCHHHHHHHHHHHHHH----------HHCCCcEEEECCCCHHHHH--------------------HHHHHHHh
Confidence 9999875 34567777776631 0112346778887665431 25678889
Q ss_pred ccC--cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchH
Q psy14504 627 RID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKK 693 (951)
Q Consensus 627 R~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~ 693 (951)
||. .++.|.+++.+++.+|++..+.. .+ +.++++++++|+... ...+|.+.|.+.
T Consensus 268 Rl~~gl~v~i~~pd~~~r~~il~~~~~~-------~~--~~l~~e~l~~ia~~~---~~~~R~l~~~l~ 324 (450)
T PRK00149 268 RFEWGLTVDIEPPDLETRIAILKKKAEE-------EG--IDLPDEVLEFIAKNI---TSNVRELEGALN 324 (450)
T ss_pred HhcCCeeEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHcCc---CCCHHHHHHHHH
Confidence 995 48999999999999996665543 33 789999999999843 233566666633
No 346
>KOG0744|consensus
Probab=99.27 E-value=9e-12 Score=127.65 Aligned_cols=144 Identities=26% Similarity=0.370 Sum_probs=97.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhcc------CCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCC-Ce
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFN------NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKP-YS 544 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~------~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~-~~ 544 (951)
-+|++||||||||+|.|++|+.+.- ....++.+++-.+. +++|+.....+... -..+.+.+.... --
T Consensus 179 liLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLF-----SKWFsESgKlV~km-F~kI~ELv~d~~~lV 252 (423)
T KOG0744|consen 179 LILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLF-----SKWFSESGKLVAKM-FQKIQELVEDRGNLV 252 (423)
T ss_pred EEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHH-----HHHHhhhhhHHHHH-HHHHHHHHhCCCcEE
Confidence 4899999999999999999999821 12234444443333 34444321111100 012233333322 23
Q ss_pred EEEEccccccCH---------------HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHH
Q psy14504 545 LILLDEIEKANS---------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIK 609 (951)
Q Consensus 545 vl~iDEid~~~~---------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~ 609 (951)
.++|||++++.. ++.|+||+.||.- -...|+++++|+|.
T Consensus 253 fvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrl---------K~~~NvliL~TSNl----------------- 306 (423)
T KOG0744|consen 253 FVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRL---------KRYPNVLILATSNL----------------- 306 (423)
T ss_pred EEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHh---------ccCCCEEEEeccch-----------------
Confidence 477899997642 6899999999952 14578888889995
Q ss_pred HHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHH
Q psy14504 610 LAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILK 654 (951)
Q Consensus 610 ~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~ 654 (951)
...++-+|++|-|.+..+.|++.+.+.+|++..+.++.
T Consensus 307 -------~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~ 344 (423)
T KOG0744|consen 307 -------TDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELI 344 (423)
T ss_pred -------HHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHH
Confidence 33456789999999999999999999999888887764
No 347
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.26 E-value=8e-11 Score=138.99 Aligned_cols=141 Identities=17% Similarity=0.185 Sum_probs=93.3
Q ss_pred HHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCe------Ee----ecCCeEEEEecCCCchhhhhhccccH
Q psy14504 536 EIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGR------TI----NFRNTIIVMTSNLGSDKIKEMEKGDK 605 (951)
Q Consensus 536 ~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~------~~----~~~~~iiI~ttn~~~~~~~~~~~~~~ 605 (951)
..+.++.+++|||||++.+++..|..|++.|++|.+....+. .+ -..++.+|+++|..
T Consensus 211 G~L~~AngGtL~Ldei~~L~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~------------ 278 (608)
T TIGR00764 211 GAIHRAHKGVLYIDEIKTMPLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLD------------ 278 (608)
T ss_pred CceEECCCCEEEEEChHhCCHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHH------------
Confidence 345577789999999999999999999999999987754321 11 12467889998842
Q ss_pred HHHHHHHHHHHHhccChhHhhccC---cEEEecCC---ChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcc
Q psy14504 606 EIIKLAVMNEVKIYFRPEFINRID---DIIVFRYL---NRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGF 679 (951)
Q Consensus 606 ~~~~~~~~~~~~~~f~p~l~~R~~---~~i~f~~l---~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~ 679 (951)
....++|+|++||+ ..+.|++. +.+...+++. .+.+.+++.+....+++++++.|.+..
T Consensus 279 ----------~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~----~i~~~~~r~G~l~~~s~~Av~~Li~~~- 343 (608)
T TIGR00764 279 ----------DLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQ----FVAQEVKKDGRIPHFTRDAVEEIVREA- 343 (608)
T ss_pred ----------HHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHH----HHHHHHHHhCCCCcCCHHHHHHHHHHH-
Confidence 12358999999998 66666654 4455555433 344444555545589999999998742
Q ss_pred cccccccc-cccchHHHHHHHHhhc
Q psy14504 680 DLIYGARD-VHGCKKSLSILLKKIH 703 (951)
Q Consensus 680 ~~~~g~~d-lhg~~~~l~~~l~~~~ 703 (951)
.+.-|.++ +-.....+..++++.+
T Consensus 344 ~R~ag~r~~lsl~~R~L~~llR~A~ 368 (608)
T TIGR00764 344 QRRAGRKDHLTLRLRELGGLVRAAG 368 (608)
T ss_pred HHHHhcccccCCCHHHHHHHHHHHH
Confidence 22233333 2233555666666553
No 348
>KOG0375|consensus
Probab=99.26 E-value=1.2e-11 Score=126.86 Aligned_cols=116 Identities=22% Similarity=0.364 Sum_probs=90.3
Q ss_pred cccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHH-HHHh
Q psy14504 680 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLL-DVLI 754 (951)
Q Consensus 680 ~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l-~~~~ 754 (951)
.|....|||||.+-+|.++.+ ++-++...+++|+||++|||-.|++|+-++.++ ......++||||..-| +|+.
T Consensus 88 APiTVCGDIHGQf~DLmKLFE-VGG~PA~t~YLFLGDYVDRGyFSiECvlYLwsLKi~yp~tl~lLRGNHECrHLT~YFT 166 (517)
T KOG0375|consen 88 APITVCGDIHGQFFDLMKLFE-VGGSPANTRYLFLGDYVDRGYFSIECVLYLWSLKINYPKTLFLLRGNHECRHLTEYFT 166 (517)
T ss_pred CCeeEecccchHHHHHHHHHH-ccCCcccceeEeeccccccceeeeehHHHHHHHhcCCCCeEEEecCCcchhhhHhHhh
Confidence 466789999999999999885 555888999999999999999999999999988 3457789999997644 4443
Q ss_pred hcc---cCCccccHHHhhCCCCHHHHHHHHhcCCce-EEeCCEEEEecccCcCCC
Q psy14504 755 NIN---KKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYYKKYLMIHAGVAKQWT 805 (951)
Q Consensus 755 ~~~---~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~~~~~vHAG~~p~~~ 805 (951)
... .+..... .+...+-+..||++ +....|++||||+.|+..
T Consensus 167 FKqEc~iKYse~v---------YdaCmesFd~LPLAAlmNqQflCVHGGlSPEi~ 212 (517)
T KOG0375|consen 167 FKQECKIKYSERV---------YDACMESFDCLPLAALMNQQFLCVHGGLSPEIH 212 (517)
T ss_pred HHHHHhHhccHHH---------HHHHHHHhccchHHHHhcCceEEecCCCCcccc
Confidence 221 1111112 25677888999997 566789999999999853
No 349
>KOG0374|consensus
Probab=99.26 E-value=3.9e-12 Score=136.74 Aligned_cols=119 Identities=24% Similarity=0.397 Sum_probs=92.3
Q ss_pred ccccccccccchHHHHHHHHhhc-ccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhh
Q psy14504 681 LIYGARDVHGCKKSLSILLKKIH-KKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLIN 755 (951)
Q Consensus 681 ~~~g~~dlhg~~~~l~~~l~~~~-~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~ 755 (951)
|...+||+||.+.+|.+++...+ | ++...++|+|||+|||+.+++++-++.++ +++++.++||||.+-.....+
T Consensus 60 PV~i~GDiHGq~~DLlrlf~~~g~~-pp~~~ylFLGDYVDRG~~slE~i~LL~a~Ki~yp~~~~lLRGNHE~~~in~~yG 138 (331)
T KOG0374|consen 60 PVKIVGDIHGQFGDLLRLFDLLGSF-PPDQNYVFLGDYVDRGKQSLETICLLFALKIKYPENVFLLRGNHECASINRIYG 138 (331)
T ss_pred CEEEEccCcCCHHHHHHHHHhcCCC-CCcccEEEecccccCCccceEEeehhhhhhhhCCceEEEeccccccccccceee
Confidence 77889999999999999999999 6 58899999999999999999999998887 567899999999886553221
Q ss_pred cccCCccccHHHhhC-CCCHHHHHHHHhcCCce-EEeCCEEEEecccCcCCC
Q psy14504 756 INKKSKLDTFDDILD-APDKKKLVSWLRTQPLA-IYYKKYLMIHAGVAKQWT 805 (951)
Q Consensus 756 ~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~p~~-~~~~~~~~vHAG~~p~~~ 805 (951)
-.+....... ......+.+-+..||+. +..++.+++|||+.|.+.
T Consensus 139 -----FydE~~rr~~~~~~w~~F~~~f~~mp~~a~i~~kI~CmhGGlsp~l~ 185 (331)
T KOG0374|consen 139 -----FYDECKRRYGEIKLWKAFNDAFNCLPLAALIDGKILCMHGGLSPHLK 185 (331)
T ss_pred -----eHHHHHHhcchHHHHHHHHHHHhhCchhheecceEEEecCCCChhhc
Confidence 1111111111 12235566778899987 556789999999999754
No 350
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.25 E-value=1e-10 Score=114.95 Aligned_cols=143 Identities=17% Similarity=0.193 Sum_probs=97.6
Q ss_pred ccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC-------------CcCCCeEEEEehhhhhc
Q psy14504 48 GRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN-------------SLLSKKILLLDIALLLA 113 (951)
Q Consensus 48 G~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~-------------~~~~~~~~~~~~~~l~~ 113 (951)
||+..++.|...+.....+| +||+||+|+||+++|+++|+.+.+..... .....+++.++.....
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~- 79 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK- 79 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-
Confidence 78999999999999888888 59999999999999999999987643221 1223455555432210
Q ss_pred CccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHh
Q psy14504 114 GTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQY 188 (951)
Q Consensus 114 ~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~ 188 (951)
+ .-....++.+...+. ...+..|++|||+|.|. .+++|+|+..||. ..+++|.+|+...
T Consensus 80 --~--~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~--------~~a~NaLLK~LEepp~~~~fiL~t~~~~---- 143 (162)
T PF13177_consen 80 --K--SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLT--------EEAQNALLKTLEEPPENTYFILITNNPS---- 143 (162)
T ss_dssp --S--SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS---------HHHHHHHHHHHHSTTTTEEEEEEES-GG----
T ss_pred --c--hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhh--------HHHHHHHHHHhcCCCCCEEEEEEECChH----
Confidence 0 011234556665543 12346799999999995 4889999999986 4788999998888
Q ss_pred hhcCHHHhhcceEEEeeCCC
Q psy14504 189 IEKDAAFERRFQKILVEEPD 208 (951)
Q Consensus 189 ~~~~~~l~~Rf~~i~~~~p~ 208 (951)
.+.|.++|||..+.|++.+
T Consensus 144 -~il~TI~SRc~~i~~~~ls 162 (162)
T PF13177_consen 144 -KILPTIRSRCQVIRFRPLS 162 (162)
T ss_dssp -GS-HHHHTTSEEEEE----
T ss_pred -HChHHHHhhceEEecCCCC
Confidence 8999999999999998764
No 351
>KOG0743|consensus
Probab=99.24 E-value=6.6e-11 Score=128.25 Aligned_cols=169 Identities=20% Similarity=0.329 Sum_probs=114.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHH-HhCCCeEEEEcc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV-RRKPYSLILLDE 550 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~-~~~~~~vl~iDE 550 (951)
.+|||||||||||++..|||.++ +..+.-+++++...... +...+ ...+.+||+|++
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L---~ydIydLeLt~v~~n~d-------------------Lr~LL~~t~~kSIivIED 294 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYL---NYDIYDLELTEVKLDSD-------------------LRHLLLATPNKSILLIED 294 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhc---CCceEEeeeccccCcHH-------------------HHHHHHhCCCCcEEEEee
Confidence 59999999999999999999999 67777777776655432 44444 334568999999
Q ss_pred ccccC------------------HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHH
Q psy14504 551 IEKAN------------------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAV 612 (951)
Q Consensus 551 id~~~------------------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~ 612 (951)
||..- +-.++.||..+|. --.. .-..-|||+|||.
T Consensus 295 IDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDG-lwSs------cg~ERIivFTTNh-------------------- 347 (457)
T KOG0743|consen 295 IDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDG-LWSS------CGDERIIVFTTNH-------------------- 347 (457)
T ss_pred cccccccccccccccccccCCcceeehHHhhhhhcc-cccc------CCCceEEEEecCC--------------------
Confidence 98641 1235678888884 2111 1135689999996
Q ss_pred HHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHH-----HHHHHHhcCCccccch-HHHHHHHHhccccccc
Q psy14504 613 MNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI-----LKNKLLKMNMDLKISK-AALKKISNIGFDLIYG 684 (951)
Q Consensus 613 ~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~-----~~~~~~~~~~~l~~~~-~~~~~L~~~~~~~~~g 684 (951)
...+.|+|+. |+|..|.+..-+.+.++.++.+++.- +...+.+.--...++| ++.+.|....-
T Consensus 348 ----~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~~~tPA~V~e~lm~~~~----- 418 (457)
T KOG0743|consen 348 ----KEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEETEVTPAQVAEELMKNKN----- 418 (457)
T ss_pred ----hhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcCccCHHHHHHHHhhccc-----
Confidence 4467899996 99999999999999999999887753 3333333211244555 44555555221
Q ss_pred ccccccchHHHHHHHH
Q psy14504 685 ARDVHGCKKSLSILLK 700 (951)
Q Consensus 685 ~~dlhg~~~~l~~~l~ 700 (951)
|.-.++..|-+.|+
T Consensus 419 --dad~~lk~Lv~~l~ 432 (457)
T KOG0743|consen 419 --DADVALKGLVEALE 432 (457)
T ss_pred --cHHHHHHHHHHHHH
Confidence 45555444444443
No 352
>KOG0372|consensus
Probab=99.24 E-value=1.2e-11 Score=120.96 Aligned_cols=118 Identities=23% Similarity=0.320 Sum_probs=86.4
Q ss_pred ccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHH---
Q psy14504 679 FDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLD--- 751 (951)
Q Consensus 679 ~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~--- 751 (951)
-.|...+|||||.+.++..+++.-+ +.+...++|+||++|||-.|++++-++..+ +++++.++||||...+.
T Consensus 42 ~tPvtvcGDIHGQf~Dllelf~igG-~~~~t~YLFLGDyVDRG~~SvEt~lLLl~lK~rYP~ritLiRGNHEsRqitqvY 120 (303)
T KOG0372|consen 42 DTPVTVCGDIHGQFYDLLELFRIGG-DVPETNYLFLGDYVDRGYYSVETFLLLLALKVRYPDRITLIRGNHESRQITQVY 120 (303)
T ss_pred CCCcEEeecccchHHHHHHHHHhCC-CCCCCceEeecchhccccchHHHHHHHHHHhhcCcceeEEeeccchhhhhhhhh
Confidence 3577889999999888887775444 778899999999999999999999887766 56789999999987543
Q ss_pred -HHhhcccCCccccHHHhhCCCCHHHHHHHHhcCCce-EEeCCEEEEecccCcCCC
Q psy14504 752 -VLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYYKKYLMIHAGVAKQWT 805 (951)
Q Consensus 752 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~~~~~vHAG~~p~~~ 805 (951)
++.....+.+ +..-....-+-+.-||+. +.++++++||||+.|...
T Consensus 121 GFY~EclrKYG--------~~~vWr~c~eiFdyL~l~aiid~kifCVHGGlSP~i~ 168 (303)
T KOG0372|consen 121 GFYDECLRKYG--------SANVWRYCTEIFDYLSLAAIIDGKIFCVHGGLSPSIQ 168 (303)
T ss_pred hHHHHHHHHcC--------ChHHHHHHHHHHHhhhHhheecCcEEEEcCCCCcchh
Confidence 3332222211 111122333445556765 678899999999999866
No 353
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.23 E-value=2.3e-10 Score=129.42 Aligned_cols=219 Identities=18% Similarity=0.215 Sum_probs=131.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC--C----CceEEeccccccchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--E----ESIIRIDMSEFIEKH 513 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~--~----~~~~~~~~~~~~~~~ 513 (951)
+.++|.+..++.+...+.....+ ..+ ++++++||||||||++++++++.+... . ..++.++|.......
T Consensus 15 ~~l~gRe~e~~~l~~~l~~~~~~----~~~-~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~ 89 (365)
T TIGR02928 15 DRIVHRDEQIEELAKALRPILRG----SRP-SNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLY 89 (365)
T ss_pred CCCCCcHHHHHHHHHHHHHHHcC----CCC-CcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHH
Confidence 56889999999999988764432 111 269999999999999999999876321 1 467888887765432
Q ss_pred ch-----hccc--CCCCCCcccccc---chhHHHHH-hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecC
Q psy14504 514 SI-----SRLI--GAPPGYIGYEEG---GYLTEIVR-RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFR 582 (951)
Q Consensus 514 ~~-----~~l~--g~~~~~~g~~~~---~~l~~~~~-~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 582 (951)
.. ..+. |......|.+.. ..+...+. ..++.||+|||+|.+....+..|..++.-..... ....
T Consensus 90 ~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~-----~~~~ 164 (365)
T TIGR02928 90 QVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGD-----LDNA 164 (365)
T ss_pred HHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccC-----CCCC
Confidence 21 1222 222222222211 12233333 3456799999999995332333333332100000 1224
Q ss_pred CeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccC-cEEEecCCChhhHHHHHHHHHHHHHHHHHhcC
Q psy14504 583 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNKLLKMN 661 (951)
Q Consensus 583 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~-~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~ 661 (951)
++.+|+++|.... ...+.+.+.+|+. ..+.|+|++.+++.+|+...+... +
T Consensus 165 ~v~lI~i~n~~~~---------------------~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~---~---- 216 (365)
T TIGR02928 165 KVGVIGISNDLKF---------------------RENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKA---F---- 216 (365)
T ss_pred eEEEEEEECCcch---------------------HhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhh---c----
Confidence 6778888886321 1235566677774 579999999999999987766421 0
Q ss_pred CccccchHHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 662 MDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 662 ~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
....++++++++++...... -||+....+.+..+.
T Consensus 217 ~~~~~~~~~l~~i~~~~~~~---~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 217 YDGVLDDGVIPLCAALAAQE---HGDARKAIDLLRVAG 251 (365)
T ss_pred cCCCCChhHHHHHHHHHHHh---cCCHHHHHHHHHHHH
Confidence 11347888888877643211 255555544455544
No 354
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=1.7e-10 Score=135.17 Aligned_cols=184 Identities=22% Similarity=0.280 Sum_probs=131.2
Q ss_pred CCccccHHHHHHHHHHHHc---------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh--
Q psy14504 44 DPVIGRDDEIRRAIQVLQR---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-- 112 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~~---------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~-- 112 (951)
..++||+..+..+...+.+ ++..+.||.||+|||||.||++||..|..+ ...++.+|+|...
T Consensus 491 ~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~-------e~aliR~DMSEy~Ek 563 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGD-------EQALIRIDMSEYMEK 563 (786)
T ss_pred cceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCC-------CccceeechHHHHHH
Confidence 3689999999998887763 333467999999999999999999999543 3567788886553
Q ss_pred --------cCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC------------
Q psy14504 113 --------AGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 172 (951)
Q Consensus 113 --------~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~------------ 172 (951)
+...|+|--+ ...+.++.+..+.+|+++|||+.-. .++.+.|++.|+.|
T Consensus 564 HsVSrLIGaPPGYVGyee---GG~LTEaVRr~PySViLlDEIEKAH--------pdV~nilLQVlDdGrLTD~~Gr~VdF 632 (786)
T COG0542 564 HSVSRLIGAPPGYVGYEE---GGQLTEAVRRKPYSVILLDEIEKAH--------PDVFNLLLQVLDDGRLTDGQGRTVDF 632 (786)
T ss_pred HHHHHHhCCCCCCceecc---ccchhHhhhcCCCeEEEechhhhcC--------HHHHHHHHHHhcCCeeecCCCCEEec
Confidence 2234555333 3344445445667899999999874 48999999999764
Q ss_pred -cEEEEEeecchHHH-----------------H------hhhcCHHHhhcce-EEEeeCCCHHHHHHHHHHHHHhhhh--
Q psy14504 173 -ELHCIGATTLNEYR-----------------Q------YIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEV-- 225 (951)
Q Consensus 173 -~i~vI~at~~~~~~-----------------~------~~~~~~~l~~Rf~-~i~~~~p~~~er~~il~~~~~~~~~-- 225 (951)
..++|.|+|--... . .-...|.|+.|++ .|.|.+.+.++..+|+...+.+...
T Consensus 633 rNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L 712 (786)
T COG0542 633 RNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRL 712 (786)
T ss_pred ceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHH
Confidence 35677777732100 0 0113578888999 5999999999999998766554322
Q ss_pred ---hcCCCCChHHHHHHHHHhhh
Q psy14504 226 ---HHGVEITDPAIVAASELSYR 245 (951)
Q Consensus 226 ---~~~~~i~~~~l~~~~~~s~~ 245 (951)
...+.+++++...++..+..
T Consensus 713 ~~~~i~l~~s~~a~~~l~~~gyd 735 (786)
T COG0542 713 AERGITLELSDEAKDFLAEKGYD 735 (786)
T ss_pred HhCCceEEECHHHHHHHHHhccC
Confidence 33466899999988887543
No 355
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.23 E-value=8.1e-11 Score=135.43 Aligned_cols=167 Identities=16% Similarity=0.235 Sum_probs=114.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhcc--CCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFN--NEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 549 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~--~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iD 549 (951)
.++|+|++|||||+|+++|++.+.. .+..+.++++.++......... ......+.+.++ ...+|+||
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~---------~~~~~~f~~~y~--~~DLLlID 384 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIR---------DGKGDSFRRRYR--EMDILLVD 384 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHH---------hccHHHHHHHhh--cCCEEEEe
Confidence 5899999999999999999998853 3567888888877653211100 000112223333 34799999
Q ss_pred cccccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhc
Q psy14504 550 EIEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINR 627 (951)
Q Consensus 550 Eid~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R 627 (951)
||+.+. +..+..|+.+++.- ...+..+|+|||..+..+ ..+.+.|.+|
T Consensus 385 DIq~l~gke~tqeeLF~l~N~l----------~e~gk~IIITSd~~P~eL--------------------~~l~~rL~SR 434 (617)
T PRK14086 385 DIQFLEDKESTQEEFFHTFNTL----------HNANKQIVLSSDRPPKQL--------------------VTLEDRLRNR 434 (617)
T ss_pred hhccccCCHHHHHHHHHHHHHH----------HhcCCCEEEecCCChHhh--------------------hhccHHHHhh
Confidence 999875 34567777777741 112334778999877654 2356788899
Q ss_pred cC--cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 628 ID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 628 ~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
|. .++.+.+++.+...+|+.... ...+ +.+++++++||+... . -.++.|.|.
T Consensus 435 f~~GLvv~I~~PD~EtR~aIL~kka-------~~r~--l~l~~eVi~yLa~r~-~--rnvR~Lega 488 (617)
T PRK14086 435 FEWGLITDVQPPELETRIAILRKKA-------VQEQ--LNAPPEVLEFIASRI-S--RNIRELEGA 488 (617)
T ss_pred hhcCceEEcCCCCHHHHHHHHHHHH-------HhcC--CCCCHHHHHHHHHhc-c--CCHHHHHHH
Confidence 94 489999999999999966543 3344 889999999999843 2 236666666
No 356
>KOG2035|consensus
Probab=99.23 E-value=1.7e-10 Score=116.15 Aligned_cols=163 Identities=18% Similarity=0.297 Sum_probs=123.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhch---------hcccCCCCCCccccccchhHHHHH--
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI---------SRLIGAPPGYIGYEEGGYLTEIVR-- 539 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~---------~~l~g~~~~~~g~~~~~~l~~~~~-- 539 (951)
+|++||||+|+||.|.+.+|-+.+||.+..-..++...+..+..- ...+--.|+-.|..+.-.+.+.++
T Consensus 35 PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKev 114 (351)
T KOG2035|consen 35 PHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEV 114 (351)
T ss_pred CeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHH
Confidence 489999999999999999999999998877777777776654221 011111233344444333333332
Q ss_pred ----------hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHH
Q psy14504 540 ----------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIK 609 (951)
Q Consensus 540 ----------~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~ 609 (951)
+.++.|++|-|+|++..++|.+|..-||. +.+++.+|+.+|.-+.
T Consensus 115 AQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEk-----------Ys~~~RlIl~cns~Sr-------------- 169 (351)
T KOG2035|consen 115 AQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEK-----------YSSNCRLILVCNSTSR-------------- 169 (351)
T ss_pred HhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHH-----------HhcCceEEEEecCccc--------------
Confidence 23578999999999999999999999996 6788999999997554
Q ss_pred HHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhc
Q psy14504 610 LAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 610 ~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
+.+++.+|| ..|..+.++.+|+..++...+ .+.+ +.++++.+..+++++
T Consensus 170 ----------iIepIrSRC-l~iRvpaps~eeI~~vl~~v~-------~kE~--l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 170 ----------IIEPIRSRC-LFIRVPAPSDEEITSVLSKVL-------KKEG--LQLPKELLKRIAEKS 218 (351)
T ss_pred ----------chhHHhhhe-eEEeCCCCCHHHHHHHHHHHH-------HHhc--ccCcHHHHHHHHHHh
Confidence 457899999 799999999999999955544 4556 677799999999865
No 357
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.22 E-value=8.7e-11 Score=127.10 Aligned_cols=162 Identities=14% Similarity=0.213 Sum_probs=110.7
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEecccc---ccchhchh-
Q psy14504 443 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSE---FIEKHSIS- 516 (951)
Q Consensus 443 ~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~---~~~~~~~~- 516 (951)
-++....+.+...+...+. .+.+||+||+|+||+++|+++|+.+...... -.+..|.. +.....-.
T Consensus 5 PW~~~~~~~l~~~~~~~rl--------~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (325)
T PRK06871 5 PWLQPTYQQITQAFQQGLG--------HHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDF 76 (325)
T ss_pred cchHHHHHHHHHHHHcCCc--------ceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 4666777788888775442 2479999999999999999999999653211 11111111 11100000
Q ss_pred cccCC-CCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecC
Q psy14504 517 RLIGA-PPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 591 (951)
Q Consensus 517 ~l~g~-~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 591 (951)
..+.. ....+|.++.+.+.+.+. .++..|++||++|+++...+|+||+.||+ +..+++||++|+
T Consensus 77 ~~i~p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEE-----------Pp~~~~fiL~t~ 145 (325)
T PRK06871 77 HILEPIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEE-----------PRPNTYFLLQAD 145 (325)
T ss_pred EEEccccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcC-----------CCCCeEEEEEEC
Confidence 00111 111344444455545443 34568999999999999999999999998 778999999988
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI 648 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~ 648 (951)
... .+.|.++||| ..+.|+|++.+++.+.+..
T Consensus 146 ~~~------------------------~llpTI~SRC-~~~~~~~~~~~~~~~~L~~ 177 (325)
T PRK06871 146 LSA------------------------ALLPTIYSRC-QTWLIHPPEEQQALDWLQA 177 (325)
T ss_pred ChH------------------------hCchHHHhhc-eEEeCCCCCHHHHHHHHHH
Confidence 643 3568899999 7999999999998877554
No 358
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.22 E-value=2.9e-10 Score=122.85 Aligned_cols=210 Identities=20% Similarity=0.246 Sum_probs=128.4
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc----CCCceEEecc----ccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----NEESIIRIDM----SEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~----~~~~~~~~~~----~~~~~ 511 (951)
..++|+++++..+...++....|...+++ .++|+||||||||++|++|++.+.. ...++.++.. +.+.+
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~---il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e 127 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQ---ILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHE 127 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCc---EEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCcc
Confidence 37999999999999999888766543332 5899999999999999999998822 2335655554 22211
Q ss_pred h------h----chhcccCCC--------C---------CCcc-------------------------ccccc-hh----
Q psy14504 512 K------H----SISRLIGAP--------P---------GYIG-------------------------YEEGG-YL---- 534 (951)
Q Consensus 512 ~------~----~~~~l~g~~--------~---------~~~g-------------------------~~~~~-~l---- 534 (951)
. . ....-+|.+ . .|-| .++.. .+
T Consensus 128 ~Pl~l~p~~~r~~~~~~~~~~~~~~~~~l~p~c~~~l~~e~~gd~~~~~V~~~~~s~~~~~gi~~~~P~D~~~qdi~~L~ 207 (361)
T smart00763 128 DPLHLFPDELREDLEDEYGIPRRRLEGDLSPWCRKRLDEEYGGDIEKFEVVRVNFSELRRIGIGKFEPKDENNQDISELT 207 (361)
T ss_pred CCcccCCHHHHHHHHHHhCCChhhcCCCCCHHHHHHHHHHhCCCcceEEEEEecCCeecceEEEEECCCCCCcccHHHHh
Confidence 0 0 000000100 0 0000 00000 00
Q ss_pred --------------------H-HHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCC
Q psy14504 535 --------------------T-EIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG 593 (951)
Q Consensus 535 --------------------~-~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~ 593 (951)
+ +.+..+..||+-|+|+.+++..+++.||.++++|.+....+.....-+.+||++||..
T Consensus 208 G~vd~~k~~~~~~~dp~a~~~~G~l~~aNrGi~~f~Ei~K~~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~ 287 (361)
T smart00763 208 GKVDIRKLEIYSESDPRAFSYDGALNRANRGILEFVEMFKADIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNES 287 (361)
T ss_pred cccCHHHhcccCCCCCeEEeccCccccccCceEEEeehhcCCHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHH
Confidence 1 2334455799999999999999999999999999998543322223455888999952
Q ss_pred chhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCCh-hhHHHHHHHHHHHHHHHHHhcCCccccchHHHH
Q psy14504 594 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KNILSIANIQLNILKNKLLKMNMDLKISKAALK 672 (951)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~-~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 672 (951)
.-. .........+|++||. +|.++.+.. ++=.+|.++.+..- ......+.+.+++
T Consensus 288 e~~-----------------~~~~~k~~eaf~dR~~-~i~vpY~l~~~~E~~Iy~k~~~~s------~~~~~~~aP~~le 343 (361)
T smart00763 288 EWQ-----------------RFKSNKKNEALLDRII-KVKVPYCLRVSEEAQIYEKLLRNS------DLTEAHIAPHTLE 343 (361)
T ss_pred HHh-----------------hhhccccchhhhhceE-EEeCCCcCCHHHHHHHHHHHhccC------cCcccccCchHHH
Confidence 210 0111234688999995 777776544 55566744444320 1123667777777
Q ss_pred HHHH
Q psy14504 673 KISN 676 (951)
Q Consensus 673 ~L~~ 676 (951)
.++.
T Consensus 344 ~aa~ 347 (361)
T smart00763 344 MAAL 347 (361)
T ss_pred HHHH
Confidence 7765
No 359
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.22 E-value=3.9e-11 Score=132.77 Aligned_cols=182 Identities=18% Similarity=0.309 Sum_probs=125.0
Q ss_pred cCCCCCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc----
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA---- 113 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~---- 113 (951)
+-+|++|||.++.+.+++.... .++..+||+.|++||||..+|+++.+..... +.+++.+||+++..
T Consensus 241 ~y~f~~Iig~S~~m~~~~~~akr~A~tdstVLi~GESGTGKElfA~~IH~~S~R~-------~~PFIaiNCaAiPe~LlE 313 (560)
T COG3829 241 KYTFDDIIGESPAMLRVLELAKRIAKTDSTVLILGESGTGKELFARAIHNLSPRA-------NGPFIAINCAAIPETLLE 313 (560)
T ss_pred ccchhhhccCCHHHHHHHHHHHhhcCCCCcEEEecCCCccHHHHHHHHHhcCccc-------CCCeEEEecccCCHHHHH
Confidence 3479999999999999988766 4667889999999999999999999865333 67899999976531
Q ss_pred ----C---ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------c
Q psy14504 114 ----G---TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------E 173 (951)
Q Consensus 114 ----~---~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~ 173 (951)
| +.+.|....--..+|+.|. ..-||+|||..|. ...+..|+..|+.+ +
T Consensus 314 SELFGye~GAFTGA~~~GK~GlfE~A~----gGTLFLDEIgemp--------l~LQaKLLRVLQEkei~rvG~t~~~~vD 381 (560)
T COG3829 314 SELFGYEKGAFTGASKGGKPGLFELAN----GGTLFLDEIGEMP--------LPLQAKLLRVLQEKEIERVGGTKPIPVD 381 (560)
T ss_pred HHHhCcCCccccccccCCCCcceeecc----CCeEEehhhccCC--------HHHHHHHHHHHhhceEEecCCCCceeeE
Confidence 1 1122222211234555542 3379999999983 47788888888532 5
Q ss_pred EEEEEeecchHHHHhhhcCHHHhh----cceEEEeeCCCHHHHH----HHHHHHHHhhhhhcC--CC-CChHHHHHHHHH
Q psy14504 174 LHCIGATTLNEYRQYIEKDAAFER----RFQKILVEEPDIEETI----SILRGLQKKYEVHHG--VE-ITDPAIVAASEL 242 (951)
Q Consensus 174 i~vI~at~~~~~~~~~~~~~~l~~----Rf~~i~~~~p~~~er~----~il~~~~~~~~~~~~--~~-i~~~~l~~~~~~ 242 (951)
|+||+|||.+. .+... +..|+. |+.++.+..|...||. .+..+++.++....+ +. ++++++..+...
T Consensus 382 VRIIAATN~nL-~~~i~-~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~y 459 (560)
T COG3829 382 VRIIAATNRNL-EKMIA-EGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLRY 459 (560)
T ss_pred EEEEeccCcCH-HHHHh-cCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHhC
Confidence 89999999875 22221 233333 7887777778776665 344666666554433 33 788888776554
No 360
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.21 E-value=1.8e-10 Score=135.10 Aligned_cols=143 Identities=13% Similarity=0.129 Sum_probs=95.1
Q ss_pred HHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCC------e----EeecCCeEEEEecCCCchhhhhhccccHH
Q psy14504 537 IVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRG------R----TINFRNTIIVMTSNLGSDKIKEMEKGDKE 606 (951)
Q Consensus 537 ~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g------~----~~~~~~~iiI~ttn~~~~~~~~~~~~~~~ 606 (951)
.+.++.+++|||||++.+++..|..|++.|+++.+....+ . ..-..++.+|+++|...
T Consensus 221 ~L~kAnGGtL~LDei~~L~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l------------ 288 (637)
T PRK13765 221 AIHKAHKGVLFIDEINTLDLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA------------ 288 (637)
T ss_pred ceeECCCcEEEEeChHhCCHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH------------
Confidence 4457778999999999999999999999999988765321 0 01123677899998632
Q ss_pred HHHHHHHHHHHhccChhHhhccC---cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccc
Q psy14504 607 IIKLAVMNEVKIYFRPEFINRID---DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIY 683 (951)
Q Consensus 607 ~~~~~~~~~~~~~f~p~l~~R~~---~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~ 683 (951)
...++|+|.+||. ..+.|.+-.+ +..+....++..+.+.+...+....++++++..|.+. |.+.-
T Consensus 289 ----------l~~~dpdL~~rfk~~~v~v~f~~~~~-d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~-~~R~a 356 (637)
T PRK13765 289 ----------LENMHPALRSRIKGYGYEVYMRDTME-DTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIRE-AKRRA 356 (637)
T ss_pred ----------HHhhhHHHHHHhccCeEEEEcccccC-CCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHH-HHHHh
Confidence 2235789999985 4566665443 4444555666666666666544568999999999984 44444
Q ss_pred cccc-cccchHHHHHHHHhhc
Q psy14504 684 GARD-VHGCKKSLSILLKKIH 703 (951)
Q Consensus 684 g~~d-lhg~~~~l~~~l~~~~ 703 (951)
|.++ +--....+..+++..+
T Consensus 357 g~r~~lsl~~~~l~~l~r~a~ 377 (637)
T PRK13765 357 GRKGHLTLKLRDLGGLVRVAG 377 (637)
T ss_pred CCccccccCHHHHHHHHHHHH
Confidence 5554 2222444555555544
No 361
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=6.3e-11 Score=129.42 Aligned_cols=142 Identities=17% Similarity=0.215 Sum_probs=96.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEeccc---cccchhchh-cccCCC--CCCccccccchhHHHHH---
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMS---EFIEKHSIS-RLIGAP--PGYIGYEEGGYLTEIVR--- 539 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~---~~~~~~~~~-~l~g~~--~~~~g~~~~~~l~~~~~--- 539 (951)
+.+||+||+|+|||++|+++|+.+...... -.+-.|. .+.....-. ..+-.. ...++.++.+.+.+.+.
T Consensus 23 ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~~~~~ 102 (328)
T PRK05707 23 HAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFVVQTA 102 (328)
T ss_pred eeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHHhhcc
Confidence 469999999999999999999999653211 0111111 111000000 001000 01234344455555543
Q ss_pred -hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHh
Q psy14504 540 -RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI 618 (951)
Q Consensus 540 -~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (951)
.++..|++||++|+++.+.+|+||+.||+ +..+++||++|+...
T Consensus 103 ~~~~~kv~iI~~a~~m~~~aaNaLLK~LEE-----------Pp~~~~fiL~t~~~~------------------------ 147 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEE-----------PSGDTVLLLISHQPS------------------------ 147 (328)
T ss_pred ccCCCeEEEECChhhCCHHHHHHHHHHHhC-----------CCCCeEEEEEECChh------------------------
Confidence 34578999999999999999999999998 667899999998643
Q ss_pred ccChhHhhccCcEEEecCCChhhHHHHHHH
Q psy14504 619 YFRPEFINRIDDIIVFRYLNRKNILSIANI 648 (951)
Q Consensus 619 ~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~ 648 (951)
.+.|.++||| ..+.|+|++.+++.+.+..
T Consensus 148 ~ll~TI~SRc-~~~~~~~~~~~~~~~~L~~ 176 (328)
T PRK05707 148 RLLPTIKSRC-QQQACPLPSNEESLQWLQQ 176 (328)
T ss_pred hCcHHHHhhc-eeeeCCCcCHHHHHHHHHH
Confidence 3568999999 6899999999999887543
No 362
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.20 E-value=5.2e-10 Score=117.17 Aligned_cols=226 Identities=19% Similarity=0.252 Sum_probs=145.3
Q ss_pred HHHHhcCCCCCccccHH---HHHHHHHHHH---cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 35 TEKARLGKLDPVIGRDD---EIRRAIQVLQ---RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 35 ~e~~rp~~l~~lvG~~~---~i~~l~~~l~---~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
.|+.+--.=+..||... .++.|...+. +.+.+++||+|++|.|||++++.+++.......+ ....++++.+..
T Consensus 25 ~eRI~~i~~~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~-~~~~~PVv~vq~ 103 (302)
T PF05621_consen 25 EERIAYIRADRWIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDE-DAERIPVVYVQM 103 (302)
T ss_pred HHHHHHHhcCCeecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCC-CCccccEEEEec
Confidence 33333333356788764 3444444443 5666899999999999999999999865322111 122356666654
Q ss_pred hhhh------------cCccc--cccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcE
Q psy14504 109 ALLL------------AGTKY--RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGEL 174 (951)
Q Consensus 109 ~~l~------------~~~~~--~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i 174 (951)
-... .+..+ ..........++.-++ ..+..+|+|||+|.+.... .....++.|.|+.+-..-++
T Consensus 104 P~~p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr-~~~vrmLIIDE~H~lLaGs-~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 104 PPEPDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLR-RLGVRMLIIDEFHNLLAGS-YRKQREFLNALKFLGNELQI 181 (302)
T ss_pred CCCCChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHH-HcCCcEEEeechHHHhccc-HHHHHHHHHHHHHHhhccCC
Confidence 2110 01111 1112211222222222 3346699999999976533 22234677788877777889
Q ss_pred EEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCH-HHHHHHHHHHHHhhhhhcCCCCChHH-HHHHHHHhhhhcccCCC
Q psy14504 175 HCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDI-EETISILRGLQKKYEVHHGVEITDPA-IVAASELSYRYISDRFM 252 (951)
Q Consensus 175 ~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~-~er~~il~~~~~~~~~~~~~~i~~~~-l~~~~~~s~~~~~~~~~ 252 (951)
.+|+.++...+. .+.-|+.+.+||..+.++.... ++-..+|..+-..++......+++.. ...+...|+|.+
T Consensus 182 piV~vGt~~A~~-al~~D~QLa~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~i----- 255 (302)
T PF05621_consen 182 PIVGVGTREAYR-ALRTDPQLASRFEPFELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGLI----- 255 (302)
T ss_pred CeEEeccHHHHH-HhccCHHHHhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCch-----
Confidence 999999887754 6778999999999999988854 44556777777776666555565544 478889998888
Q ss_pred chhHHHHHHHHHHHhHHh
Q psy14504 253 PDKAIDLIDEAAAKIKIE 270 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~~~ 270 (951)
++..+++..|+..+...
T Consensus 256 -G~l~~ll~~aA~~AI~s 272 (302)
T PF05621_consen 256 -GELSRLLNAAAIAAIRS 272 (302)
T ss_pred -HHHHHHHHHHHHHHHhc
Confidence 89999999888766543
No 363
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.20 E-value=5.8e-11 Score=119.75 Aligned_cols=248 Identities=16% Similarity=0.251 Sum_probs=155.3
Q ss_pred HhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHh---ccCCCceEEeccccccchh
Q psy14504 437 LLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACI---FNNEESIIRIDMSEFIEKH 513 (951)
Q Consensus 437 ~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l---~~~~~~~~~~~~~~~~~~~ 513 (951)
.|+..+.-...+.....+.+.+.... ...++||.||+|.||+.+|+.|-+.- +.-..+|+.++|..+....
T Consensus 181 ~lksgiatrnp~fnrmieqierva~r------sr~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~ 254 (531)
T COG4650 181 FLKSGIATRNPHFNRMIEQIERVAIR------SRAPILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDT 254 (531)
T ss_pred HHHhcccccChHHHHHHHHHHHHHhh------ccCCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCch
Confidence 34445555555555555555544321 12359999999999999999886433 2225699999999999998
Q ss_pred chhcccCCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCC
Q psy14504 514 SISRLIGAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 592 (951)
Q Consensus 514 ~~~~l~g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 592 (951)
..+.+||+..| +.|..+. -...++.+.++.||+|||..+..+-|..||+.+++.++..-....--.++.-+|+.|-.
T Consensus 255 amsalfghvkgaftga~~~--r~gllrsadggmlfldeigelgadeqamllkaieekrf~pfgsdr~v~sdfqliagtvr 332 (531)
T COG4650 255 AMSALFGHVKGAFTGARES--REGLLRSADGGMLFLDEIGELGADEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVR 332 (531)
T ss_pred HHHHHHhhhccccccchhh--hhhhhccCCCceEehHhhhhcCccHHHHHHHHHHhhccCCCCCccccccchHHhhhhHH
Confidence 89999999776 5554443 34567889999999999999999999999999998776643221111223333333322
Q ss_pred CchhhhhhccccHHHHHHHHHH-HHHhccChhHhhccCcEEEecCCC----hhhHHHHHHHHHHHHHHHHHhcCCccccc
Q psy14504 593 GSDKIKEMEKGDKEIIKLAVMN-EVKIYFRPEFINRIDDIIVFRYLN----RKNILSIANIQLNILKNKLLKMNMDLKIS 667 (951)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~f~p~l~~R~~~~i~f~~l~----~~~~~~i~~~~l~~~~~~~~~~~~~l~~~ 667 (951)
.+.+ ..++.|+.+++.||+ ...|.-+. ++|+.--+...+.+. .+..|-.+.+.
T Consensus 333 ------------------dlrq~vaeg~fredl~arin-lwtf~lpgl~qr~ediepnldyelerh---a~~~g~~vrfn 390 (531)
T COG4650 333 ------------------DLRQLVAEGKFREDLYARIN-LWTFTLPGLRQRQEDIEPNLDYELERH---ASLTGDSVRFN 390 (531)
T ss_pred ------------------HHHHHHhccchHHHHHHhhh-eeeeeccccccCccccCCCccHHHHHH---HHhhCceeeee
Confidence 2222 235679999999995 55554443 355555555555443 34456667777
Q ss_pred hHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHH
Q psy14504 668 KAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLR 729 (951)
Q Consensus 668 ~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~ 729 (951)
.++........-++. .-..|++.+|..-+.. +.-+.|.|.+..++++
T Consensus 391 tearra~l~fa~spq---a~w~gnfrelsasvtr------------matlad~grit~~~ve 437 (531)
T COG4650 391 TEARRAWLAFATSPQ---ATWRGNFRELSASVTR------------MATLADSGRITLDVVE 437 (531)
T ss_pred hHHHHHHHHhccCcc---hhhcccHHHHhHHHHH------------HHHHhcCCceeHHHHH
Confidence 777655444222222 1234554444443321 1234577777777764
No 364
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.20 E-value=8.5e-10 Score=131.22 Aligned_cols=199 Identities=14% Similarity=0.133 Sum_probs=123.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhhhc-----C-CC------CCCCCceEEEEeCCCCCcHHHHHHHHHHHhc---
Q psy14504 431 LLNIENLLCKRVVGQDEAISAVSNAIRRSRS-----G-LS------DAKRPYGSFMFLGPTGVGKTELCKTLSACIF--- 495 (951)
Q Consensus 431 l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~-----~-~~------~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~--- 495 (951)
...+.+.+...|.|.+.+++.+.-.+-.... + +. ..-+...++||+|+||||||.+|+++++...
T Consensus 441 ~~~L~~SiaP~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ 520 (915)
T PTZ00111 441 YRILLDSFAPSIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI 520 (915)
T ss_pred HHHHHHHhCCeEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc
Confidence 4456677788999999999988776642210 0 00 1113334899999999999999999998763
Q ss_pred -cCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecC
Q psy14504 496 -NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDN 574 (951)
Q Consensus 496 -~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~ 574 (951)
.++.++..+++...... .+. ..|. -..-.+.+..+.+++++|||++++++..|..|+++|+.+.++..
T Consensus 521 ytsG~~~s~vgLTa~~~~------~d~---~tG~--~~le~GaLvlAdgGtL~IDEidkms~~~Q~aLlEaMEqqtIsI~ 589 (915)
T PTZ00111 521 YTSGKSSSSVGLTASIKF------NES---DNGR--AMIQPGAVVLANGGVCCIDELDKCHNESRLSLYEVMEQQTVTIA 589 (915)
T ss_pred cCCCCCCccccccchhhh------ccc---ccCc--ccccCCcEEEcCCCeEEecchhhCCHHHHHHHHHHHhCCEEEEe
Confidence 22345555555432110 000 0010 00111234556779999999999999999999999999887644
Q ss_pred C-CeEee-cCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEE-ecCCChhhHHHHHHHHHH
Q psy14504 575 R-GRTIN-FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIV-FRYLNRKNILSIANIQLN 651 (951)
Q Consensus 575 ~-g~~~~-~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~-f~~l~~~~~~~i~~~~l~ 651 (951)
. |.... ..++.+|+|+|.-...+.... .+.+ .-.|+|++++|||.++. ...++++.=.+|+.+.++
T Consensus 590 KaGi~~tL~ar~rVIAAaNP~~gryd~~~---------s~~e--ni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~ 658 (915)
T PTZ00111 590 KAGIVATLKAETAILASCNPINSRYNKNK---------AVIE--NINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAK 658 (915)
T ss_pred cCCcceecCCCeEEEEEcCCcccccCccc---------Cccc--ccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHH
Confidence 3 43333 368899999997432211100 0000 12478999999998554 445555544445555443
No 365
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.20 E-value=9.6e-11 Score=133.85 Aligned_cols=171 Identities=18% Similarity=0.257 Sum_probs=116.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc--cCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHH-hCCCeEEE
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIF--NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-RKPYSLIL 547 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~--~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-~~~~~vl~ 547 (951)
.+++|+||+|||||+|++++++.+. ..+..++++.+.++....... + +.. . +.+....+ .....+|+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~-l-~~~-------~-~~~~~~~~~~~~~dvLi 211 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDI-L-QKT-------H-KEIEQFKNEICQNDVLI 211 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH-H-HHh-------h-hHHHHHHHHhccCCEEE
Confidence 4699999999999999999999774 345677888877766432111 0 000 0 11222221 23456999
Q ss_pred EccccccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh
Q psy14504 548 LDEIEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI 625 (951)
Q Consensus 548 iDEid~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~ 625 (951)
|||++.+. +..++.|+.+++.- ...+..+|+|+|..+..+ ..+.+.+.
T Consensus 212 IDDiq~l~~k~~~~e~lf~l~N~~----------~~~~k~iIltsd~~P~~l--------------------~~l~~rL~ 261 (450)
T PRK14087 212 IDDVQFLSYKEKTNEIFFTIFNNF----------IENDKQLFFSSDKSPELL--------------------NGFDNRLI 261 (450)
T ss_pred EeccccccCCHHHHHHHHHHHHHH----------HHcCCcEEEECCCCHHHH--------------------hhccHHHH
Confidence 99999887 67788888888741 112235788998776543 34678888
Q ss_pred hccC--cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 626 NRID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 626 ~R~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
+||. .++.+.||+.+++.+|+++.+.. .++.+.++++++++|+...- ..+|.+.|.
T Consensus 262 SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~-------~gl~~~l~~evl~~Ia~~~~---gd~R~L~ga 319 (450)
T PRK14087 262 TRFNMGLSIAIQKLDNKTATAIIKKEIKN-------QNIKQEVTEEAINFISNYYS---DDVRKIKGS 319 (450)
T ss_pred HHHhCCceeccCCcCHHHHHHHHHHHHHh-------cCCCCCCCHHHHHHHHHccC---CCHHHHHHH
Confidence 9984 49999999999999997766543 35445799999999998432 335555555
No 366
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.20 E-value=1.1e-09 Score=120.15 Aligned_cols=202 Identities=16% Similarity=0.264 Sum_probs=126.4
Q ss_pred CCCCcc-ccHH--HHHHHHHHHHcC--CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14504 42 KLDPVI-GRDD--EIRRAIQVLQRR--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 116 (951)
Q Consensus 42 ~l~~lv-G~~~--~i~~l~~~l~~~--~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 116 (951)
+|+.+| |... .......+...+ .-+.++|+||+|.|||+|++++++...... .+..++.+...... ..
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~-----~~a~v~y~~se~f~--~~ 157 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANG-----PNARVVYLTSEDFT--ND 157 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhC-----CCceEEeccHHHHH--HH
Confidence 677765 4433 233333343333 357789999999999999999999875532 14456655543332 11
Q ss_pred ccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHHh
Q psy14504 117 YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFE 196 (951)
Q Consensus 117 ~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l~ 196 (951)
++-.....--.-|++-.... +|+||+++.+.+.. ....+....+..+.+.++ .+|.|+...+. +.-.+.+.|+
T Consensus 158 ~v~a~~~~~~~~Fk~~y~~d---lllIDDiq~l~gk~--~~qeefFh~FN~l~~~~k-qIvltsdr~P~-~l~~~~~rL~ 230 (408)
T COG0593 158 FVKALRDNEMEKFKEKYSLD---LLLIDDIQFLAGKE--RTQEEFFHTFNALLENGK-QIVLTSDRPPK-ELNGLEDRLR 230 (408)
T ss_pred HHHHHHhhhHHHHHHhhccC---eeeechHhHhcCCh--hHHHHHHHHHHHHHhcCC-EEEEEcCCCch-hhccccHHHH
Confidence 11111111111122211112 89999999986542 113455666777777777 45555543331 2334679999
Q ss_pred hcce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHh
Q psy14504 197 RRFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 197 ~Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
|||. .+.+.+|+.+.|..||+.... ..++.++++++..++....+.+ +.+...++.....+
T Consensus 231 SR~~~Gl~~~I~~Pd~e~r~aiL~kka~----~~~~~i~~ev~~~la~~~~~nv------ReLegaL~~l~~~a 294 (408)
T COG0593 231 SRLEWGLVVEIEPPDDETRLAILRKKAE----DRGIEIPDEVLEFLAKRLDRNV------RELEGALNRLDAFA 294 (408)
T ss_pred HHHhceeEEeeCCCCHHHHHHHHHHHHH----hcCCCCCHHHHHHHHHHhhccH------HHHHHHHHHHHHHH
Confidence 9997 389999999999999998555 4689999999999999877766 55555555544443
No 367
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=6.6e-10 Score=120.14 Aligned_cols=183 Identities=15% Similarity=0.196 Sum_probs=120.3
Q ss_pred cHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC-----------CcCCCeEEEEehhhhhcCcc
Q psy14504 49 RDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN-----------SLLSKKILLLDIALLLAGTK 116 (951)
Q Consensus 49 ~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~ 116 (951)
++...+++...+.+++.+| +||+||+|+||+++|.++|+.+.+..... .....+++.+....-..+.+
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k 88 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDK 88 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCccccc
Confidence 3456778888888777776 78999999999999999999987643111 01112233332111000000
Q ss_pred c-cccHHHHHHHHHHHHHhc---CCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHhhh
Q psy14504 117 Y-RGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIE 190 (951)
Q Consensus 117 ~-~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~ 190 (951)
. ..-....++.+.+.+... ++..|++||++|.|. ..++|.|+..||. +.+++|.+|+.++ .
T Consensus 89 ~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~~~fiL~~~~~~-----~ 155 (319)
T PRK08769 89 LRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAIN--------RAACNALLKTLEEPSPGRYLWLISAQPA-----R 155 (319)
T ss_pred ccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhC--------HHHHHHHHHHhhCCCCCCeEEEEECChh-----h
Confidence 0 011234566666655421 234699999999994 4788899999985 4778888888887 7
Q ss_pred cCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHH
Q psy14504 191 KDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLI 260 (951)
Q Consensus 191 ~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll 260 (951)
+.|.++|||..+.|++|+.++....|... + +++.....++.++++. |..+..++
T Consensus 156 lLpTIrSRCq~i~~~~~~~~~~~~~L~~~--------~--~~~~~a~~~~~l~~G~------p~~A~~~~ 209 (319)
T PRK08769 156 LPATIRSRCQRLEFKLPPAHEALAWLLAQ--------G--VSERAAQEALDAARGH------PGLAAQWL 209 (319)
T ss_pred CchHHHhhheEeeCCCcCHHHHHHHHHHc--------C--CChHHHHHHHHHcCCC------HHHHHHHh
Confidence 89999999999999999999888777531 1 3344444556666553 35555544
No 368
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.20 E-value=5.2e-10 Score=127.95 Aligned_cols=196 Identities=19% Similarity=0.237 Sum_probs=124.1
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhch--
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSI-- 515 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~-- 515 (951)
+.++|.+..++.+...+.....+. .| .+++++||||||||++++.+++.+... ...++.++|.........
T Consensus 30 ~~l~~Re~e~~~l~~~l~~~~~~~----~~-~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~ 104 (394)
T PRK00411 30 ENLPHREEQIEELAFALRPALRGS----RP-LNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFS 104 (394)
T ss_pred CCCCCHHHHHHHHHHHHHHHhCCC----CC-CeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHH
Confidence 567888888999988886554321 12 268999999999999999999887433 357888888766543221
Q ss_pred ---hcccCCCCCCcccccc---chhHHHHH-hCCCeEEEEccccccC----HHHHHHHHHHhhcceeecCCCeEeecCCe
Q psy14504 516 ---SRLIGAPPGYIGYEEG---GYLTEIVR-RKPYSLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGRTINFRNT 584 (951)
Q Consensus 516 ---~~l~g~~~~~~g~~~~---~~l~~~~~-~~~~~vl~iDEid~~~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 584 (951)
..+.+.+....|.+.. ..+...+. ...+.||+|||+|.+. .+.+..|+..++.. ...++
T Consensus 105 ~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~----------~~~~v 174 (394)
T PRK00411 105 EIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEY----------PGARI 174 (394)
T ss_pred HHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhcc----------CCCeE
Confidence 2222322222232211 12222333 2345799999999886 44556666655431 11256
Q ss_pred EEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccC-cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 585 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 585 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~-~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
.+|+++|.... ...+.|.+.+|+. ..|.|+|++.+++.+|+...+.. .+ ..
T Consensus 175 ~vI~i~~~~~~---------------------~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~---~~----~~ 226 (394)
T PRK00411 175 GVIGISSDLTF---------------------LYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEE---GF----YP 226 (394)
T ss_pred EEEEEECCcch---------------------hhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHh---hc----cc
Confidence 68888875321 1124566666763 47899999999999997766532 11 12
Q ss_pred cccchHHHHHHHHhc
Q psy14504 664 LKISKAALKKISNIG 678 (951)
Q Consensus 664 l~~~~~~~~~L~~~~ 678 (951)
-.+++++++.+++..
T Consensus 227 ~~~~~~~l~~i~~~~ 241 (394)
T PRK00411 227 GVVDDEVLDLIADLT 241 (394)
T ss_pred CCCCHhHHHHHHHHH
Confidence 357899999998844
No 369
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=1.2e-10 Score=125.92 Aligned_cols=162 Identities=15% Similarity=0.178 Sum_probs=108.9
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc---ccch-hchh
Q psy14504 441 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE---FIEK-HSIS 516 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~---~~~~-~~~~ 516 (951)
-.-++..+.+.+...+...+. .+.+||+||+|+||+++|.++|+.+.+.... ..-.|.. +... |.--
T Consensus 5 ~yPW~~~~~~~l~~~~~~~rl--------~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~-~~~~c~~c~~~~~g~HPD~ 75 (319)
T PRK08769 5 FSPWQQRAYDQTVAALDAGRL--------GHGLLICGPEGLGKRAVALALAEHVLASGPD-PAAAQRTRQLIAAGTHPDL 75 (319)
T ss_pred ccccHHHHHHHHHHHHHcCCc--------ceeEeeECCCCCCHHHHHHHHHHHHhCCCCC-CCCcchHHHHHhcCCCCCE
Confidence 345778888888888875442 2369999999999999999999998654311 0001110 0000 0001
Q ss_pred cccCCCCCC--------ccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCe
Q psy14504 517 RLIGAPPGY--------IGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 584 (951)
Q Consensus 517 ~l~g~~~~~--------~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 584 (951)
..+...+.. ++.+..+.+.+.+.. +...|++||++|+++.+.+|+||+.||+ +..++
T Consensus 76 ~~i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~~ 144 (319)
T PRK08769 76 QLVSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEE-----------PSPGR 144 (319)
T ss_pred EEEecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhC-----------CCCCC
Confidence 111101111 222222334444432 3468999999999999999999999998 77889
Q ss_pred EEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHH
Q psy14504 585 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 647 (951)
Q Consensus 585 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~ 647 (951)
+||++|+... .+.|.++||| ..+.|++++.+++.+.+.
T Consensus 145 ~fiL~~~~~~------------------------~lLpTIrSRC-q~i~~~~~~~~~~~~~L~ 182 (319)
T PRK08769 145 YLWLISAQPA------------------------RLPATIRSRC-QRLEFKLPPAHEALAWLL 182 (319)
T ss_pred eEEEEECChh------------------------hCchHHHhhh-eEeeCCCcCHHHHHHHHH
Confidence 9999988643 3568999999 699999999998887743
No 370
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.19 E-value=1.7e-10 Score=142.36 Aligned_cols=181 Identities=21% Similarity=0.312 Sum_probs=124.4
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC-------CCceEEeccccccch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-------EESIIRIDMSEFIEK 512 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~-------~~~~~~~~~~~~~~~ 512 (951)
..++|.+..++.+...+.+.. ..+++|+||||||||++|+.+|+.+... +..++.++++.+..
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~---------~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~a- 248 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRT---------KNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLA- 248 (821)
T ss_pred CCCCCcHHHHHHHHHHHcccc---------cCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhc-
Confidence 468999999999999987543 2268999999999999999999987422 34566666654432
Q ss_pred hchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH--------HHHHHHHHHhhcceeecCCCeEeecC
Q psy14504 513 HSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------DVFNILLQILDDGRLTDNRGRTINFR 582 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~--------~~~~~Ll~~le~g~~~~~~g~~~~~~ 582 (951)
...|.|.-+. ..+.+.+....+.||||||+|.+.. ++.+.|...+..|.
T Consensus 249 ---------g~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg~------------ 307 (821)
T CHL00095 249 ---------GTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARGE------------ 307 (821)
T ss_pred ---------cCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCCC------------
Confidence 1235564333 2333344556678999999986542 46788888888754
Q ss_pred CeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCC
Q psy14504 583 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNM 662 (951)
Q Consensus 583 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~ 662 (951)
..+|.+|+...-. +. -.-.|.|.+|| ..|.+.+++.++...|++.....+.+.. +
T Consensus 308 -l~~IgaTt~~ey~-----------------~~--ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~---~- 362 (821)
T CHL00095 308 -LQCIGATTLDEYR-----------------KH--IEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHH---N- 362 (821)
T ss_pred -cEEEEeCCHHHHH-----------------HH--HhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHc---C-
Confidence 4478888842210 00 01357888999 5789999999999999777655544332 2
Q ss_pred ccccchHHHHHHHHh
Q psy14504 663 DLKISKAALKKISNI 677 (951)
Q Consensus 663 ~l~~~~~~~~~L~~~ 677 (951)
+.++++++..+...
T Consensus 363 -v~i~deal~~i~~l 376 (821)
T CHL00095 363 -LSISDKALEAAAKL 376 (821)
T ss_pred -CCCCHHHHHHHHHH
Confidence 44788888887764
No 371
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.18 E-value=1.9e-10 Score=127.32 Aligned_cols=155 Identities=24% Similarity=0.311 Sum_probs=109.1
Q ss_pred CCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHH
Q psy14504 44 DPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFED 123 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 123 (951)
..++|++.++..+...+... .++||.||||||||++|+.+|+.+ +.+++.+.+......+...|...-
T Consensus 24 ~~~~g~~~~~~~~l~a~~~~--~~vll~G~PG~gKT~la~~lA~~l----------~~~~~~i~~t~~l~p~d~~G~~~~ 91 (329)
T COG0714 24 KVVVGDEEVIELALLALLAG--GHVLLEGPPGVGKTLLARALARAL----------GLPFVRIQCTPDLLPSDLLGTYAY 91 (329)
T ss_pred CeeeccHHHHHHHHHHHHcC--CCEEEECCCCccHHHHHHHHHHHh----------CCCeEEEecCCCCCHHHhcCchhH
Confidence 34889999888887766555 799999999999999999999999 788888887655433444443332
Q ss_pred HHHHH-HHHHHhcCCC------eEEEEecccccccCCCCCCchhHHhhhhhhccC--------------CcEEEEEeecc
Q psy14504 124 RLKKI-LKEISNNQKD------IIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--------------GELHCIGATTL 182 (951)
Q Consensus 124 ~l~~~-~~~a~~~~~~------~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--------------~~i~vI~at~~ 182 (951)
..... .....-..+| +|+++|||++..+ ..++.|+..|+. ..+.+|+|+|+
T Consensus 92 ~~~~~~~~~~~~~~gpl~~~~~~ill~DEInra~p--------~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np 163 (329)
T COG0714 92 AALLLEPGEFRFVPGPLFAAVRVILLLDEINRAPP--------EVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNP 163 (329)
T ss_pred hhhhccCCeEEEecCCcccccceEEEEeccccCCH--------HHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCc
Confidence 21100 0000000111 3999999998743 677788888853 34678888898
Q ss_pred hHHHHhhhcCHHHhhcce-EEEeeCC-CHHHHHHHHHH
Q psy14504 183 NEYRQYIEKDAAFERRFQ-KILVEEP-DIEETISILRG 218 (951)
Q Consensus 183 ~~~~~~~~~~~~l~~Rf~-~i~~~~p-~~~er~~il~~ 218 (951)
.++.....+++++++||. .+.++.| +.++...++..
T Consensus 164 ~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~ 201 (329)
T COG0714 164 GEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILAR 201 (329)
T ss_pred cccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHh
Confidence 887777789999999995 5999999 55555555443
No 372
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.18 E-value=4.4e-10 Score=122.82 Aligned_cols=167 Identities=18% Similarity=0.193 Sum_probs=111.3
Q ss_pred CCCC-CcEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------CcCCCeEEEEehhhhhcCccccccHHHHHHH
Q psy14504 63 RSKN-NPVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------SLLSKKILLLDIALLLAGTKYRGEFEDRLKK 127 (951)
Q Consensus 63 ~~~~-~iLL~GppGtGKTtla~~la~~l~~~~~~~--------------~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~ 127 (951)
++.+ .+||+||+|+|||++|+++|+.+.+..... .....+++.+....- ++. -....++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~---~~~--i~id~iR~ 93 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA---DKT--IKVDQVRE 93 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC---CCC--CCHHHHHH
Confidence 4444 478999999999999999999987632100 011123343332110 010 12235666
Q ss_pred HHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHhhhcCHHHhhcceEE
Q psy14504 128 ILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKI 202 (951)
Q Consensus 128 ~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i 202 (951)
+.+.+.. .++..|++||++|.|. .+++|.|+..||. +.+++|.+|+.++ .+.|+++|||..+
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~--------~~aaNaLLK~LEEPp~~~~fiL~t~~~~-----~ll~TI~SRc~~~ 160 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMN--------RNAANALLKSLEEPSGDTVLLLISHQPS-----RLLPTIKSRCQQQ 160 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCC--------HHHHHHHHHHHhCCCCCeEEEEEECChh-----hCcHHHHhhceee
Confidence 6655542 2345688999999994 4788899999986 5788889999888 7899999999999
Q ss_pred EeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHH
Q psy14504 203 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 261 (951)
Q Consensus 203 ~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 261 (951)
.|++|+.++....|..... ..+++....++.++.+. |..|..+++
T Consensus 161 ~~~~~~~~~~~~~L~~~~~--------~~~~~~~~~~l~la~Gs------p~~A~~l~~ 205 (328)
T PRK05707 161 ACPLPSNEESLQWLQQALP--------ESDERERIELLTLAGGS------PLRALQLHE 205 (328)
T ss_pred eCCCcCHHHHHHHHHHhcc--------cCChHHHHHHHHHcCCC------HHHHHHHHC
Confidence 9999999988888764321 12344555556666553 366655543
No 373
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.18 E-value=8.6e-11 Score=134.18 Aligned_cols=171 Identities=17% Similarity=0.237 Sum_probs=111.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 549 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iD 549 (951)
+++|+||||||||+|++++++.+... +..+.++++.++......+ + . ......+....+ ....+|+||
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~-~-~-------~~~~~~f~~~~~-~~~dvLlID 201 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDS-M-K-------EGKLNEFREKYR-KKVDVLLID 201 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHH-H-h-------cccHHHHHHHHH-hcCCEEEEe
Confidence 69999999999999999999987432 4567788877665431111 0 0 001112222222 245799999
Q ss_pred cccccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhc
Q psy14504 550 EIEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINR 627 (951)
Q Consensus 550 Eid~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R 627 (951)
|++.+. ...+..|+..++.- ...+..+|+||+..+..+ ..+.+.+.+|
T Consensus 202 Di~~l~~~~~~q~elf~~~n~l----------~~~~k~iIitsd~~p~~l--------------------~~l~~rL~SR 251 (440)
T PRK14088 202 DVQFLIGKTGVQTELFHTFNEL----------HDSGKQIVICSDREPQKL--------------------SEFQDRLVSR 251 (440)
T ss_pred chhhhcCcHHHHHHHHHHHHHH----------HHcCCeEEEECCCCHHHH--------------------HHHHHHHhhH
Confidence 999774 34566677766531 112235777777655543 1245677888
Q ss_pred cC--cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHH
Q psy14504 628 ID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKS 694 (951)
Q Consensus 628 ~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~ 694 (951)
|. .++.+.|++.+++.+|++..+. ..+ +.++++++++|++.. ...+|.+.|.+..
T Consensus 252 ~~~gl~v~i~~pd~e~r~~IL~~~~~-------~~~--~~l~~ev~~~Ia~~~---~~~~R~L~g~l~~ 308 (440)
T PRK14088 252 FQMGLVAKLEPPDEETRKKIARKMLE-------IEH--GELPEEVLNFVAENV---DDNLRRLRGAIIK 308 (440)
T ss_pred HhcCceEeeCCCCHHHHHHHHHHHHH-------hcC--CCCCHHHHHHHHhcc---ccCHHHHHHHHHH
Confidence 83 3899999999999999665543 234 778999999999843 2346777777333
No 374
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.17 E-value=3.4e-10 Score=124.33 Aligned_cols=177 Identities=19% Similarity=0.202 Sum_probs=113.9
Q ss_pred ccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc--------
Q psy14504 46 VIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT-------- 115 (951)
Q Consensus 46 lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~-------- 115 (951)
+||++..++.+.+.+.+ ....+|||+|++||||+++|++|...... .+.+++.+||+.+....
T Consensus 1 liG~S~~m~~~~~~~~~~a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r-------~~~pfv~vnc~~~~~~~l~~~lfG~ 73 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPLDRPVLIIGERGTGKELIAARLHYLSKR-------WQGPLVKLNCAALSENLLDSELFGH 73 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCCCCCEEEECCCCChHHHHHHHHHHhcCc-------cCCCeEEEeCCCCChHHHHHHHhcc
Confidence 57888888888776653 55678999999999999999999876532 25688899987543100
Q ss_pred ---cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEEEEe
Q psy14504 116 ---KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGA 179 (951)
Q Consensus 116 ---~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~vI~a 179 (951)
.+.|... .-...+..+ .+.+|||||++.|. .+.+..|..+++.+ ++++|++
T Consensus 74 ~~g~~~ga~~-~~~G~~~~a----~gGtL~Ldei~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~a 140 (329)
T TIGR02974 74 EAGAFTGAQK-RHQGRFERA----DGGTLFLDELATAS--------LLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCA 140 (329)
T ss_pred ccccccCccc-ccCCchhhC----CCCEEEeCChHhCC--------HHHHHHHHHHHHcCcEEecCCCceeccceEEEEe
Confidence 0000000 001123322 24589999999994 46677788887543 3689999
Q ss_pred ecchHHH--HhhhcCHHHhhcceEEEeeCCCHHHHH----HHHHHHHHhhhhhcC----CCCChHHHHHHHHH
Q psy14504 180 TTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG----VEITDPAIVAASEL 242 (951)
Q Consensus 180 t~~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~er~----~il~~~~~~~~~~~~----~~i~~~~l~~~~~~ 242 (951)
|+.+.-. ..-...+.|..||..+.|..|+..+|. .+++.++.++....+ ..+++++++.+...
T Consensus 141 t~~~l~~~~~~g~fr~dL~~rl~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y 213 (329)
T TIGR02974 141 TNADLPALAAEGRFRADLLDRLAFDVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEY 213 (329)
T ss_pred chhhHHHHhhcCchHHHHHHHhcchhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhC
Confidence 8865311 111345677889977666666666655 444565555443322 46889988877665
No 375
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.17 E-value=2.2e-10 Score=126.86 Aligned_cols=159 Identities=20% Similarity=0.249 Sum_probs=96.9
Q ss_pred CCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh----hhhhcCcccc
Q psy14504 43 LDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI----ALLLAGTKYR 118 (951)
Q Consensus 43 l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~ 118 (951)
++++++.+..++.++..+.. ..+++|+||||||||++|+.+|..+.....+ .....++++. .+++.|..-.
T Consensus 174 l~d~~i~e~~le~l~~~L~~--~~~iil~GppGtGKT~lA~~la~~l~~~~~~---~~v~~VtFHpsySYeDFI~G~rP~ 248 (459)
T PRK11331 174 LNDLFIPETTIETILKRLTI--KKNIILQGPPGVGKTFVARRLAYLLTGEKAP---QRVNMVQFHQSYSYEDFIQGYRPN 248 (459)
T ss_pred hhcccCCHHHHHHHHHHHhc--CCCEEEECCCCCCHHHHHHHHHHHhcCCccc---ceeeEEeecccccHHHHhcccCCC
Confidence 67888899999999888775 4799999999999999999999987432111 1122233321 2333222111
Q ss_pred --cc-H-HHHHHHHHHHHHhc-CCCeEEEEecccccccCCCCC-------CchhH--Hhhhh--------hhccCCcEEE
Q psy14504 119 --GE-F-EDRLKKILKEISNN-QKDIIIFIDELHTMIGTGKVE-------GSIDA--GNMLK--------PELSRGELHC 176 (951)
Q Consensus 119 --g~-~-~~~l~~~~~~a~~~-~~~~iL~iDEid~l~~~~~~~-------~~~~~--~~~L~--------~~le~~~i~v 176 (951)
|- . ...+..++..|... ..+.||||||+++-..+.-.+ .+... ...-+ .+.-...+.|
T Consensus 249 ~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f~iP~Nl~I 328 (459)
T PRK11331 249 GVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVPLTYSENDEERFYVPENVYI 328 (459)
T ss_pred CCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHHHhhhhhhhhccccccccccceeeeccccccccccCCCCeEE
Confidence 10 0 11234455555533 357999999999764322000 00000 00000 0111346899
Q ss_pred EEeecchHHHHhhhcCHHHhhcceEEEeeCC
Q psy14504 177 IGATTLNEYRQYIEKDAAFERRFQKILVEEP 207 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p 207 (951)
|||+|..+ +....+|.||+|||..|++.+.
T Consensus 329 IgTMNt~D-rs~~~lD~AlrRRF~fi~i~p~ 358 (459)
T PRK11331 329 IGLMNTAD-RSLAVVDYALRRRFSFIDIEPG 358 (459)
T ss_pred EEecCccc-cchhhccHHHHhhhheEEecCC
Confidence 99999887 3455789999999999988763
No 376
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.17 E-value=1.7e-10 Score=128.42 Aligned_cols=144 Identities=26% Similarity=0.385 Sum_probs=98.0
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC---------------------
Q psy14504 441 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--------------------- 499 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~--------------------- 499 (951)
.++|++.+...+......... .| +.+||+||||||||++|.++|+.+++...
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~~------~~-halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESGR------LP-HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHP 74 (325)
T ss_pred CcccchhHHHHHHHHHHhcCC------CC-ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCC
Confidence 356777777777777664331 11 14999999999999999999999975442
Q ss_pred ceEEeccccccchhchhcccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCC
Q psy14504 500 SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR 575 (951)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~ 575 (951)
.+..++.++..... +..+..+.+..... ..+..|++|||+|.++++++|+|+..+++
T Consensus 75 d~lel~~s~~~~~~------------i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEe------- 135 (325)
T COG0470 75 DFLELNPSDLRKID------------IIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEE------- 135 (325)
T ss_pred ceEEecccccCCCc------------chHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhcc-------
Confidence 23333322211100 01111122222221 24578999999999999999999999997
Q ss_pred CeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCCh
Q psy14504 576 GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR 639 (951)
Q Consensus 576 g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~ 639 (951)
+..++.||++||.... +.|.+.+|| .++.|+|++.
T Consensus 136 ----p~~~~~~il~~n~~~~------------------------il~tI~SRc-~~i~f~~~~~ 170 (325)
T COG0470 136 ----PPKNTRFILITNDPSK------------------------ILPTIRSRC-QRIRFKPPSR 170 (325)
T ss_pred ----CCCCeEEEEEcCChhh------------------------ccchhhhcc-eeeecCCchH
Confidence 7789999999995433 457899999 7999999433
No 377
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=1.6e-10 Score=126.60 Aligned_cols=161 Identities=12% Similarity=0.092 Sum_probs=109.8
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEecccc---ccch-h-ch
Q psy14504 443 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSE---FIEK-H-SI 515 (951)
Q Consensus 443 ~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~---~~~~-~-~~ 515 (951)
-+++.+.+.+...+...+. .+.+||+||+|+||+++|.++|+.+.+.... -.+..|.. +... | ++
T Consensus 5 PWl~~~~~~l~~~~~~~rl--------~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (334)
T PRK07993 5 PWLRPDYEQLVGSYQAGRG--------HHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_pred CCChHHHHHHHHHHHcCCc--------ceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 4666777778777765442 2479999999999999999999999653211 01111111 1100 0 00
Q ss_pred hcccCCCC-CCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEec
Q psy14504 516 SRLIGAPP-GYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 590 (951)
Q Consensus 516 ~~l~g~~~-~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 590 (951)
..+..... ..++.++.+.+.+.+. .+...|++||++|+++.+..|+||+.||+ +..+++||++|
T Consensus 77 ~~i~p~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t 145 (334)
T PRK07993 77 YTLTPEKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEE-----------PPENTWFFLAC 145 (334)
T ss_pred EEEecccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcC-----------CCCCeEEEEEE
Confidence 01111100 1244444455555543 34578999999999999999999999998 77889999998
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 647 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~ 647 (951)
+... .+.|.++||| ..+.|++++.+++.+.+.
T Consensus 146 ~~~~------------------------~lLpTIrSRC-q~~~~~~~~~~~~~~~L~ 177 (334)
T PRK07993 146 REPA------------------------RLLATLRSRC-RLHYLAPPPEQYALTWLS 177 (334)
T ss_pred CChh------------------------hChHHHHhcc-ccccCCCCCHHHHHHHHH
Confidence 8644 3568899999 589999999999887743
No 378
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.16 E-value=3.6e-10 Score=133.46 Aligned_cols=193 Identities=15% Similarity=0.169 Sum_probs=123.2
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEE
Q psy14504 470 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLIL 547 (951)
Q Consensus 470 ~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~ 547 (951)
++++||.|+||||||++|++|++.+.. ..+|+.+.+. . ....++|...-+.....+ ..-...+..+.+++||
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~-~~pfv~i~~~-~----t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~ 89 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPP-IMPFVELPLG-V----TEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLY 89 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCc-CCCeEecCcc-c----chhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEe
Confidence 568999999999999999999998743 2357777642 1 123444432100000000 0011234456779999
Q ss_pred EccccccCHHHHHHHHHHhhcceeecC-CCeEee-cCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh
Q psy14504 548 LDEIEKANSDVFNILLQILDDGRLTDN-RGRTIN-FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI 625 (951)
Q Consensus 548 iDEid~~~~~~~~~Ll~~le~g~~~~~-~g~~~~-~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~ 625 (951)
+|||+.+++.+|+.|++.|++|.++.. .|.... ..++.+|+|+|.... .+.|++.|+
T Consensus 90 lDEi~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~---------------------~g~L~~~Ll 148 (589)
T TIGR02031 90 VDMANLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEG---------------------GGGLPDHLL 148 (589)
T ss_pred ccchhhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccc---------------------cCCCCHHHH
Confidence 999999999999999999999986532 243333 356788888885421 246899999
Q ss_pred hccCcEEEecCCCh-hhHHHHHHHHHHHHH--------------HHHHhcCCccccchHHHHHHHHhccccccccccccc
Q psy14504 626 NRIDDIIVFRYLNR-KNILSIANIQLNILK--------------NKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHG 690 (951)
Q Consensus 626 ~R~~~~i~f~~l~~-~~~~~i~~~~l~~~~--------------~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg 690 (951)
+||+..|....+.. ++..+|+...+..+. ...+..--.+.++++++++|+... -.+|+...++
T Consensus 149 dRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~--~~~gv~s~Ra 226 (589)
T TIGR02031 149 DRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTA--ASLGISGHRA 226 (589)
T ss_pred HhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHH--HHcCCCCccH
Confidence 99998777766544 445777776553221 012222234788999999998854 3455544444
Q ss_pred c
Q psy14504 691 C 691 (951)
Q Consensus 691 ~ 691 (951)
.
T Consensus 227 ~ 227 (589)
T TIGR02031 227 D 227 (589)
T ss_pred H
Confidence 3
No 379
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=2.3e-10 Score=123.56 Aligned_cols=159 Identities=13% Similarity=0.158 Sum_probs=109.4
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc------h-hch
Q psy14504 443 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE------K-HSI 515 (951)
Q Consensus 443 ~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~------~-~~~ 515 (951)
-++....+.+...+...+. .+.+||+||.|+||+++|+++|+.+......- .-|..... . |.-
T Consensus 6 PWl~~~~~~l~~~~~~~rl--------~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~--~~Cg~C~sC~~~~~g~HPD 75 (319)
T PRK06090 6 PWLVPVWQNWKAGLDAGRI--------PGALLLQSDEGLGVESLVELFSRALLCQNYQS--EACGFCHSCELMQSGNHPD 75 (319)
T ss_pred ccHHHHHHHHHHHHHcCCc--------ceeEeeECCCCCCHHHHHHHHHHHHcCCCCCC--CCCCCCHHHHHHHcCCCCC
Confidence 4667777888877765442 24799999999999999999999996543211 11211110 0 000
Q ss_pred hcccCCC--CCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEe
Q psy14504 516 SRLIGAP--PGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 589 (951)
Q Consensus 516 ~~l~g~~--~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 589 (951)
-..+... ...++.++.+.+...+.. +...|++||++|+++...+|+||+.||+ +..+++||++
T Consensus 76 ~~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~ 144 (319)
T PRK06090 76 LHVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEE-----------PAPNCLFLLV 144 (319)
T ss_pred EEEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcC-----------CCCCeEEEEE
Confidence 0111111 112333444445444433 3478999999999999999999999998 7788999998
Q ss_pred cCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHH
Q psy14504 590 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 647 (951)
Q Consensus 590 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~ 647 (951)
|+... .+.|.++||| ..+.|++++.+++.+.+.
T Consensus 145 t~~~~------------------------~lLpTI~SRC-q~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 145 THNQK------------------------RLLPTIVSRC-QQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred ECChh------------------------hChHHHHhcc-eeEeCCCCCHHHHHHHHH
Confidence 88643 3568899999 699999999999888754
No 380
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.16 E-value=2.6e-10 Score=124.33 Aligned_cols=141 Identities=16% Similarity=0.207 Sum_probs=95.7
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCC---ceEEecccc---ccch-hchhcccCCC---------------------
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEE---SIIRIDMSE---FIEK-HSISRLIGAP--------------------- 522 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~---~~~~~~~~~---~~~~-~~~~~l~g~~--------------------- 522 (951)
+.+||+||+|+||+++|+.+|+.+..... .-.+..|.. +... |.--..+...
T Consensus 22 ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~~~~ 101 (342)
T PRK06964 22 HALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADADEG 101 (342)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchhhcc
Confidence 47999999999999999999999965321 001111111 0000 0000011000
Q ss_pred -------CCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecC
Q psy14504 523 -------PGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 591 (951)
Q Consensus 523 -------~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 591 (951)
...++-++.+.+...+. .+...|++||++|+++.+..|+||+.||+ +..+++||++|+
T Consensus 102 ~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEE-----------Pp~~t~fiL~t~ 170 (342)
T PRK06964 102 GKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEE-----------PPPGTVFLLVSA 170 (342)
T ss_pred cccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcC-----------CCcCcEEEEEEC
Confidence 01233333344444442 34578999999999999999999999998 778899999888
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 647 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~ 647 (951)
... .+.|.++||| ..+.|+|++.+++.+.+.
T Consensus 171 ~~~------------------------~LLpTI~SRc-q~i~~~~~~~~~~~~~L~ 201 (342)
T PRK06964 171 RID------------------------RLLPTILSRC-RQFPMTVPAPEAAAAWLA 201 (342)
T ss_pred Chh------------------------hCcHHHHhcC-EEEEecCCCHHHHHHHHH
Confidence 633 4578999999 799999999999988854
No 381
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.15 E-value=2.3e-10 Score=130.56 Aligned_cols=177 Identities=14% Similarity=0.190 Sum_probs=115.1
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc----------
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF---------- 509 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~---------- 509 (951)
..++||..+++.+..++.. ..+++|+||||||||++++.|+..+...... ..+++..+
T Consensus 191 ~~v~Gq~~~~~al~laa~~-----------G~~llliG~~GsGKTtLak~L~gllpp~~g~-e~le~~~i~s~~g~~~~~ 258 (506)
T PRK09862 191 SDVIGQEQGKRGLEITAAG-----------GHNLLLIGPPGTGKTMLASRINGLLPDLSNE-EALESAAILSLVNAESVQ 258 (506)
T ss_pred EEEECcHHHHhhhheeccC-----------CcEEEEECCCCCcHHHHHHHHhccCCCCCCc-EEEecchhhhhhcccccc
Confidence 3567888887776544431 1379999999999999999999877322111 11222221
Q ss_pred --------cchh---chhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCC-C-
Q psy14504 510 --------IEKH---SISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-G- 576 (951)
Q Consensus 510 --------~~~~---~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~-g- 576 (951)
..++ +...++|. .. ..-...+..+.+++||+||++.+++.+++.|++.|++|.++... |
T Consensus 259 ~~~~~rPfr~ph~~~s~~~l~GG-------g~-~~~pG~l~~A~gGvLfLDEi~e~~~~~~~~L~~~LE~g~v~I~r~g~ 330 (506)
T PRK09862 259 KQWRQRPFRSPHHSASLTAMVGG-------GA-IPGPGEISLAHNGVLFLDELPEFERRTLDALREPIESGQIHLSRTRA 330 (506)
T ss_pred CCcCCCCccCCCccchHHHHhCC-------Cc-eehhhHhhhccCCEEecCCchhCCHHHHHHHHHHHHcCcEEEecCCc
Confidence 1111 11112221 10 12234677888899999999999999999999999999986433 3
Q ss_pred eEeecCCeEEEEecCCCchhhhh--hccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhh
Q psy14504 577 RTINFRNTIIVMTSNLGSDKIKE--MEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKN 641 (951)
Q Consensus 577 ~~~~~~~~iiI~ttn~~~~~~~~--~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~ 641 (951)
......++.+|+|+|........ .|...+.+..++ ...++.++++|||..+.+++++.++
T Consensus 331 ~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y-----~~~ls~plLDRfdL~v~v~~~~~~~ 392 (506)
T PRK09862 331 KITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRY-----LNRLSGPFLDRFDLSLEIPLPPPGI 392 (506)
T ss_pred ceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHH-----HhhCCHhHHhhccEEEEeCCCCHHH
Confidence 33345788999999975421111 133344444433 5678999999999999999987653
No 382
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.14 E-value=6.6e-10 Score=136.77 Aligned_cols=183 Identities=20% Similarity=0.279 Sum_probs=122.1
Q ss_pred CCCccccHHHHHHHHHHHHcC--------CC-CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc
Q psy14504 43 LDPVIGRDDEIRRAIQVLQRR--------SK-NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA 113 (951)
Q Consensus 43 l~~lvG~~~~i~~l~~~l~~~--------~~-~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~ 113 (951)
.+.++||+..++.+...+.+. .+ ..+||+||||||||++|++||+.+... +..++.++++.+..
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~-------~~~~i~id~se~~~ 639 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS-------DDAMVRIDMSEFME 639 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC-------CCcEEEEEhHHhhh
Confidence 457899999988888766531 11 358999999999999999999988542 33567777765431
Q ss_pred C----------ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCc----------
Q psy14504 114 G----------TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE---------- 173 (951)
Q Consensus 114 ~----------~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~---------- 173 (951)
. ..|.|.-+ ...+.++......+||||||++.+. .++++.|+++++.|.
T Consensus 640 ~~~~~~LiG~~pgy~g~~~---~g~l~~~v~~~p~~vLllDEieka~--------~~v~~~Ll~ile~g~l~d~~gr~vd 708 (857)
T PRK10865 640 KHSVSRLVGAPPGYVGYEE---GGYLTEAVRRRPYSVILLDEVEKAH--------PDVFNILLQVLDDGRLTDGQGRTVD 708 (857)
T ss_pred hhhHHHHhCCCCcccccch---hHHHHHHHHhCCCCeEEEeehhhCC--------HHHHHHHHHHHhhCceecCCceEEe
Confidence 1 11222211 1122333223345799999999874 367888888886542
Q ss_pred ---EEEEEeecch--HH------------HH------hhhcCHHHhhcce-EEEeeCCCHHHHHHHHHHHHHhhhh----
Q psy14504 174 ---LHCIGATTLN--EY------------RQ------YIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEV---- 225 (951)
Q Consensus 174 ---i~vI~at~~~--~~------------~~------~~~~~~~l~~Rf~-~i~~~~p~~~er~~il~~~~~~~~~---- 225 (951)
.++|+|||.. .+ .. .-...|.|.+|++ .+.|.+++.++...|++..+.....
T Consensus 709 ~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~ 788 (857)
T PRK10865 709 FRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEE 788 (857)
T ss_pred ecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 3478888862 10 00 1124689999996 4999999999999998877665321
Q ss_pred -hcCCCCChHHHHHHHHHh
Q psy14504 226 -HHGVEITDPAIVAASELS 243 (951)
Q Consensus 226 -~~~~~i~~~~l~~~~~~s 243 (951)
...+.++++++..++...
T Consensus 789 ~gi~l~is~~al~~L~~~g 807 (857)
T PRK10865 789 RGYEIHISDEALKLLSENG 807 (857)
T ss_pred CCCcCcCCHHHHHHHHHcC
Confidence 233567899888887653
No 383
>PHA02244 ATPase-like protein
Probab=99.14 E-value=3.7e-10 Score=121.75 Aligned_cols=142 Identities=19% Similarity=0.255 Sum_probs=89.3
Q ss_pred ccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh--hhhc-Cc-cccc
Q psy14504 46 VIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA--LLLA-GT-KYRG 119 (951)
Q Consensus 46 lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~--~l~~-~~-~~~g 119 (951)
.+|....+......+. .....++||.||||||||++|+++|..+ +.+++.++.. .+.. |. ...|
T Consensus 98 ~ig~sp~~~~~~~ri~r~l~~~~PVLL~GppGtGKTtLA~aLA~~l----------g~pfv~In~l~d~~~L~G~i~~~g 167 (383)
T PHA02244 98 KIASNPTFHYETADIAKIVNANIPVFLKGGAGSGKNHIAEQIAEAL----------DLDFYFMNAIMDEFELKGFIDANG 167 (383)
T ss_pred ccCCCHHHHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecChHHHhhcccccccc
Confidence 3555554433322221 1334689999999999999999999987 6677776631 1110 00 1111
Q ss_pred cHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc-------------CCcEEEEEeecchH--
Q psy14504 120 EFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-------------RGELHCIGATTLNE-- 184 (951)
Q Consensus 120 ~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le-------------~~~i~vI~at~~~~-- 184 (951)
.+. -..++..+. .+.+|+|||++.+.+ +++..|..+++ ...+++|+|+|+..
T Consensus 168 ~~~--dgpLl~A~~---~GgvLiLDEId~a~p--------~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G 234 (383)
T PHA02244 168 KFH--ETPFYEAFK---KGGLFFIDEIDASIP--------EALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKG 234 (383)
T ss_pred ccc--chHHHHHhh---cCCEEEEeCcCcCCH--------HHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccC
Confidence 111 123334333 345999999998854 44555555553 25689999999842
Q ss_pred ----HHHhhhcCHHHhhcceEEEeeCCCHH
Q psy14504 185 ----YRQYIEKDAAFERRFQKILVEEPDIE 210 (951)
Q Consensus 185 ----~~~~~~~~~~l~~Rf~~i~~~~p~~~ 210 (951)
|.....+++++++||..|+|..|+..
T Consensus 235 ~~~~y~G~k~L~~AllDRFv~I~~dyp~~~ 264 (383)
T PHA02244 235 ADHIYVARNKIDGATLDRFAPIEFDYDEKI 264 (383)
T ss_pred cccccCCCcccCHHHHhhcEEeeCCCCcHH
Confidence 11124789999999999999999843
No 384
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.14 E-value=4.7e-10 Score=108.80 Aligned_cols=150 Identities=24% Similarity=0.375 Sum_probs=99.2
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCC
Q psy14504 444 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP 523 (951)
Q Consensus 444 Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~ 523 (951)
|++..+..+...+... +..+++++||||||||++++.+++.+...+.+++.+++.+...........+..
T Consensus 2 ~~~~~~~~i~~~~~~~---------~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~- 71 (151)
T cd00009 2 GQEEAIEALREALELP---------PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF- 71 (151)
T ss_pred chHHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-
Confidence 5566667776666532 112699999999999999999999986666788888887765532222111000
Q ss_pred CCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccc
Q psy14504 524 GYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 603 (951)
Q Consensus 524 ~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~ 603 (951)
.............+++|+|||++.+.+.....+++.++...... ....++.+|+++|....
T Consensus 72 ------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~ii~~~~~~~~-------- 132 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLR-----IDRENVRVIGATNRPLL-------- 132 (151)
T ss_pred ------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCcee-----ccCCCeEEEEecCcccc--------
Confidence 00111122334567999999999998888888888888632110 12356788888886442
Q ss_pred cHHHHHHHHHHHHHhccChhHhhccCcEEEecC
Q psy14504 604 DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRY 636 (951)
Q Consensus 604 ~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~ 636 (951)
..+.+.+.+|++..+.++|
T Consensus 133 --------------~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 133 --------------GDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred --------------CCcChhHHhhhccEeecCC
Confidence 1356788899987777764
No 385
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.14 E-value=3.2e-09 Score=113.17 Aligned_cols=97 Identities=23% Similarity=0.185 Sum_probs=65.6
Q ss_pred CeEEEEecccccccCCCCCCchhHHhhhhhhccCC-cEEEEEeecchH-------HHHhhhcCHHHhhcceEEEeeCCCH
Q psy14504 138 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLNE-------YRQYIEKDAAFERRFQKILVEEPDI 209 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-~i~vI~at~~~~-------~~~~~~~~~~l~~Rf~~i~~~~p~~ 209 (951)
|.||||||+|.| ..+....|...+|.. .-++|.|||+-. +..-..++..|++|+-.|...+++.
T Consensus 279 pGVLFIDEvHmL--------DiEcFsfLnralEs~~sPiiIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~ 350 (398)
T PF06068_consen 279 PGVLFIDEVHML--------DIECFSFLNRALESELSPIIILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSE 350 (398)
T ss_dssp E-EEEEESGGGS--------BHHHHHHHHHHHTSTT--EEEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----H
T ss_pred cceEEecchhhc--------cHHHHHHHHHHhcCCCCcEEEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCH
Confidence 679999999999 356777888889864 456677777422 1123357789999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q psy14504 210 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 246 (951)
Q Consensus 210 ~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 246 (951)
+|..+|++.-++ ..++.+++++++.+..++...
T Consensus 351 ~ei~~Il~iR~~----~E~v~i~~~al~~L~~ig~~~ 383 (398)
T PF06068_consen 351 EEIKQILKIRAK----EEDVEISEDALDLLTKIGVET 383 (398)
T ss_dssp HHHHHHHHHHHH----HCT--B-HHHHHHHHHHHHHS
T ss_pred HHHHHHHHhhhh----hhcCcCCHHHHHHHHHHhhhc
Confidence 999999987666 368999999999988876553
No 386
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.13 E-value=9.3e-10 Score=121.11 Aligned_cols=181 Identities=18% Similarity=0.167 Sum_probs=116.8
Q ss_pred CCCCccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC---cc
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---TK 116 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~---~~ 116 (951)
.+++++|.+..++.+.+.+.+ ....+|||+|++||||+++|+++...... .+.+++.++|..+... ..
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r-------~~~pfv~v~c~~~~~~~~~~~ 76 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRLAPLDKPVLIIGERGTGKELIASRLHYLSSR-------WQGPFISLNCAALNENLLDSE 76 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhCCc-------cCCCeEEEeCCCCCHHHHHHH
Confidence 467899999999888887653 55678999999999999999999865421 2568888998765210 00
Q ss_pred --------ccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEE
Q psy14504 117 --------YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELH 175 (951)
Q Consensus 117 --------~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~ 175 (951)
+.|.... ....+..+ .+..|||||++.|.. ..+..|..+++.+ +++
T Consensus 77 lfg~~~~~~~g~~~~-~~g~l~~a----~gGtL~l~~i~~L~~--------~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 77 LFGHEAGAFTGAQKR-HPGRFERA----DGGTLFLDELATAPM--------LVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HccccccccCCcccc-cCCchhcc----CCCeEEeCChhhCCH--------HHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 0011000 01123222 245899999999943 5667777777543 378
Q ss_pred EEEeecchHH--HHhhhcCHHHhhcceEEEeeCCCHHHHH----HHHHHHHHhhhhhcC----CCCChHHHHHHHHH
Q psy14504 176 CIGATTLNEY--RQYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG----VEITDPAIVAASEL 242 (951)
Q Consensus 176 vI~at~~~~~--~~~~~~~~~l~~Rf~~i~~~~p~~~er~----~il~~~~~~~~~~~~----~~i~~~~l~~~~~~ 242 (951)
+|++|+..-- ...-...+.|..||..+.+..|+..+|. .+++.++.++....+ ..++++++..+...
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y 220 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRLAFDVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNY 220 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhcCCCEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhC
Confidence 8998876531 1112345778889987677777766665 444555554433322 35788888776654
No 387
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.13 E-value=3.8e-10 Score=133.46 Aligned_cols=185 Identities=21% Similarity=0.261 Sum_probs=120.4
Q ss_pred hcCCCCCccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC--
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG-- 114 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~-- 114 (951)
+..+++.+||++..++++.+.+.+ ....+|||+|++|||||++|++|+..... .+.+++.+||..+...
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r-------~~~pfv~i~c~~~~~~~~ 263 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARSNSTVLLRGESGTGKELIAKAIHYLSPR-------AKRPFVKVNCAALSETLL 263 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeecCCCCHHHH
Confidence 346889999999999998887663 56678999999999999999999986532 2568899998665210
Q ss_pred -----ccccccHHHH---HHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------c
Q psy14504 115 -----TKYRGEFEDR---LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------E 173 (951)
Q Consensus 115 -----~~~~g~~~~~---l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~ 173 (951)
+...|.+... -...+.. ..+.+|||||++.|.. +.+..|..+++.+ +
T Consensus 264 ~~~lfg~~~~~~~~~~~~~~g~~~~----a~~GtL~ldei~~L~~--------~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 264 ESELFGHEKGAFTGAIAQRKGRFEL----ADGGTLFLDEIGEISP--------AFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHcCCCCCccCCCCcCCCCcccc----cCCCeEEEechhhCCH--------HHHHHHHHHHhcCcEEECCCCceEeec
Confidence 0000000000 0011222 2245899999999943 6677788887643 3
Q ss_pred EEEEEeecchHHH--HhhhcCHHHhhcceEEEeeCCCHHH----HHHHHHHHHHhhhhhc--CCCCChHHHHHHHHH
Q psy14504 174 LHCIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEE----TISILRGLQKKYEVHH--GVEITDPAIVAASEL 242 (951)
Q Consensus 174 i~vI~at~~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~e----r~~il~~~~~~~~~~~--~~~i~~~~l~~~~~~ 242 (951)
+++|++|+.+... ..-...+.|..|+..+.+..|+..+ ...+++.++.++.... .+.+++++++.+...
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~ 408 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSC 408 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhC
Confidence 7899998865311 1113456777788765555555544 4456667766554322 267899988877765
No 388
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.13 E-value=6.7e-11 Score=117.63 Aligned_cols=124 Identities=22% Similarity=0.301 Sum_probs=69.9
Q ss_pred CCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcC------------------CCeE
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL------------------SKKI 103 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~------------------~~~~ 103 (951)
.|++++||+...+.+.-.... ..|+||+||||||||++|+.+...|..-...+.+. ..++
T Consensus 1 Df~dI~GQe~aKrAL~iAAaG--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~~~~~~~Pf 78 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAAG--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDEGLIRQRPF 78 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHHC--C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---EEEE---E
T ss_pred ChhhhcCcHHHHHHHHHHHcC--CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCCceecCCCc
Confidence 488999999999988876654 47999999999999999999998764321110000 0111
Q ss_pred EEEeh----hhhhcCcc--ccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-----
Q psy14504 104 LLLDI----ALLLAGTK--YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG----- 172 (951)
Q Consensus 104 ~~~~~----~~l~~~~~--~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~----- 172 (951)
..... ..++.|+. ..|+ +. .....|||+||+..+. ..+.+.|+..++.+
T Consensus 79 r~phhs~s~~~liGgg~~~~PGe-----------is-lAh~GVLflDE~~ef~--------~~vld~Lr~ple~g~v~i~ 138 (206)
T PF01078_consen 79 RAPHHSASEAALIGGGRPPRPGE-----------IS-LAHRGVLFLDELNEFD--------RSVLDALRQPLEDGEVTIS 138 (206)
T ss_dssp EEE-TT--HHHHHEEGGGEEE-C-----------GG-GGTTSEEEECETTTS---------HHHHHHHHHHHHHSBEEEE
T ss_pred ccCCCCcCHHHHhCCCcCCCcCH-----------HH-HhcCCEEEechhhhcC--------HHHHHHHHHHHHCCeEEEE
Confidence 11110 11111110 0111 11 1224599999998873 47888999999766
Q ss_pred ----------cEEEEEeecchHHHH
Q psy14504 173 ----------ELHCIGATTLNEYRQ 187 (951)
Q Consensus 173 ----------~i~vI~at~~~~~~~ 187 (951)
++.+|+|+|+-+...
T Consensus 139 R~~~~~~~Pa~f~lv~a~NPcpCG~ 163 (206)
T PF01078_consen 139 RAGGSVTYPARFLLVAAMNPCPCGY 163 (206)
T ss_dssp ETTEEEEEB--EEEEEEE-S-----
T ss_pred ECCceEEEecccEEEEEeccccccc
Confidence 457899999876543
No 389
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.13 E-value=1.1e-09 Score=131.04 Aligned_cols=160 Identities=20% Similarity=0.291 Sum_probs=103.5
Q ss_pred CCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcC----CCCC---------------------C
Q psy14504 43 LDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIING----EVPN---------------------S 97 (951)
Q Consensus 43 l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~----~~~~---------------------~ 97 (951)
|..||||+..+..+...+..+...++||.|+||||||++|+++++.+..- +++. .
T Consensus 3 f~~ivGq~~~~~al~~~av~~~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~ 82 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAVDPRIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSE 82 (633)
T ss_pred cchhcChHHHHHHHHHHhhCCCCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccc
Confidence 67899999999888777666666889999999999999999999887210 0000 0
Q ss_pred cCCCeEEEEehhhhhcCccccccHHHHHHHHHHH--------HHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhc
Q psy14504 98 LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKE--------ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL 169 (951)
Q Consensus 98 ~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~--------a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l 169 (951)
....+++.+.++... ....|... +...+.. ........||||||++.|.+ ..++.|+..|
T Consensus 83 ~~~~pfv~~p~~~t~--~~l~G~~d--~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~--------~~q~~Ll~~l 150 (633)
T TIGR02442 83 QRPVPFVNLPLGATE--DRVVGSLD--IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD--------HLVDVLLDAA 150 (633)
T ss_pred cCCCCeeeCCCCCcH--HHcCCccc--HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH--------HHHHHHHHHH
Confidence 112345544433221 11112110 1111110 00011245999999999943 6777888888
Q ss_pred cCC---------------cEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCC-CHHHHHHHHHH
Q psy14504 170 SRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEP-DIEETISILRG 218 (951)
Q Consensus 170 e~~---------------~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p-~~~er~~il~~ 218 (951)
+.+ .+.+|+|+|+.+ -.+.++|.+||.. |.++.+ +.+++.++++.
T Consensus 151 e~g~~~v~r~g~~~~~~~~~~lIat~np~e----g~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~ 212 (633)
T TIGR02442 151 AMGVNRVEREGLSVSHPARFVLIGTMNPEE----GDLRPQLLDRFGLCVDVAAPRDPEERVEIIRR 212 (633)
T ss_pred hcCCEEEEECCceeeecCCeEEEEecCCCC----CCCCHHHHhhcceEEEccCCCchHHHHHHHHH
Confidence 755 378899888654 2578999999985 777777 45777777754
No 390
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.13 E-value=1.1e-09 Score=127.81 Aligned_cols=199 Identities=12% Similarity=0.115 Sum_probs=121.7
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhhhcC-CC--CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEe---
Q psy14504 431 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSG-LS--DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI--- 504 (951)
Q Consensus 431 l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~-~~--~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~--- 504 (951)
...+.+.+...+.|++.++..+.-++-..... .. ..-+...++||+|+||||||++|+++++.+... .++..
T Consensus 194 ~~~l~~si~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~--~~~~~~~~ 271 (509)
T smart00350 194 YERLSRSLAPSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA--VYTTGKGS 271 (509)
T ss_pred HHHHHHhhCccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc--eEcCCCCC
Confidence 34566777888999999988777766432100 00 011222389999999999999999999987321 22221
Q ss_pred ccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecC-CCeEeec-C
Q psy14504 505 DMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDN-RGRTINF-R 582 (951)
Q Consensus 505 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~-~g~~~~~-~ 582 (951)
++..+... .+..+ ..|. ...-.+.+..+.+++++|||++++++..|..|++.|+.+.++.. .|..... .
T Consensus 272 ~~~~l~~~-----~~~~~--~~g~--~~~~~G~l~~A~~Gil~iDEi~~l~~~~q~~L~e~me~~~i~i~k~G~~~~l~~ 342 (509)
T smart00350 272 SAVGLTAA-----VTRDP--ETRE--FTLEGGALVLADNGVCCIDEFDKMDDSDRTAIHEAMEQQTISIAKAGITTTLNA 342 (509)
T ss_pred CcCCcccc-----ceEcc--Ccce--EEecCccEEecCCCEEEEechhhCCHHHHHHHHHHHhcCEEEEEeCCEEEEecC
Confidence 11111110 00000 0010 00111233456779999999999999999999999999887643 3444433 5
Q ss_pred CeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEe-cCCChhhHHHHHHHHHH
Q psy14504 583 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVF-RYLNRKNILSIANIQLN 651 (951)
Q Consensus 583 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f-~~l~~~~~~~i~~~~l~ 651 (951)
++.+|+|+|.-....... ..+.. .-.++|++++|||.++.+ .+++.+.-.+|+.+.+.
T Consensus 343 ~~~viAa~NP~~g~y~~~---------~~~~~--n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 343 RCSVLAAANPIGGRYDPK---------LTPEE--NIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred CcEEEEEeCCCCcccCCC---------cChhh--ccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHH
Confidence 788999999633211000 00000 115899999999985554 66777777778776654
No 391
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.12 E-value=1.3e-09 Score=119.51 Aligned_cols=179 Identities=15% Similarity=0.159 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------CcCCCeEEEEehhhhhcC
Q psy14504 50 DDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------SLLSKKILLLDIALLLAG 114 (951)
Q Consensus 50 ~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~--------------~~~~~~~~~~~~~~l~~~ 114 (951)
+...+++...+.+.+.+| +||+||+|+||+++|.++|+.+.+..... .....+++.+.... +
T Consensus 8 ~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~ 84 (334)
T PRK07993 8 RPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEK---G 84 (334)
T ss_pred hHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccc---c
Confidence 355677888877766665 56889999999999999999987632110 11223344443211 0
Q ss_pred ccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHhh
Q psy14504 115 TKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYI 189 (951)
Q Consensus 115 ~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~ 189 (951)
... -....++.+.+.+. ..++..|++||++|.|. ..++|.|+..||. +..++|.+|+.++
T Consensus 85 ~~~--I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~----- 149 (334)
T PRK07993 85 KSS--LGVDAVREVTEKLYEHARLGGAKVVWLPDAALLT--------DAAANALLKTLEEPPENTWFFLACREPA----- 149 (334)
T ss_pred ccc--CCHHHHHHHHHHHhhccccCCceEEEEcchHhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----
Confidence 010 11234555555543 12345699999999995 4788999999985 5788888888888
Q ss_pred hcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHH
Q psy14504 190 EKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 261 (951)
Q Consensus 190 ~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 261 (951)
.+.|.++|||+.+.|++|+.++....|..- ..++++....++.++++.. ..|..+++
T Consensus 150 ~lLpTIrSRCq~~~~~~~~~~~~~~~L~~~---------~~~~~~~a~~~~~la~G~~------~~Al~l~~ 206 (334)
T PRK07993 150 RLLATLRSRCRLHYLAPPPEQYALTWLSRE---------VTMSQDALLAALRLSAGAP------GAALALLQ 206 (334)
T ss_pred hChHHHHhccccccCCCCCHHHHHHHHHHc---------cCCCHHHHHHHHHHcCCCH------HHHHHHhc
Confidence 899999999999999999998888777521 1245555666677776643 56665554
No 392
>PRK09087 hypothetical protein; Validated
Probab=99.11 E-value=4.6e-10 Score=116.50 Aligned_cols=138 Identities=14% Similarity=0.180 Sum_probs=94.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
.++|+||+|+|||+|++++++.. ...+++..++... ....+ ..++|+|||+
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~-----~~~~i~~~~~~~~---------------------~~~~~---~~~~l~iDDi 96 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKS-----DALLIHPNEIGSD---------------------AANAA---AEGPVLIEDI 96 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhc-----CCEEecHHHcchH---------------------HHHhh---hcCeEEEECC
Confidence 48999999999999999998764 2223333222211 11111 1258999999
Q ss_pred cccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccC--
Q psy14504 552 EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-- 629 (951)
Q Consensus 552 d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~-- 629 (951)
+.+.. .+..|+.+++. ..-....+|+|++..+..+. .+.|++.+|+.
T Consensus 97 ~~~~~-~~~~lf~l~n~----------~~~~g~~ilits~~~p~~~~--------------------~~~~dL~SRl~~g 145 (226)
T PRK09087 97 DAGGF-DETGLFHLINS----------VRQAGTSLLMTSRLWPSSWN--------------------VKLPDLKSRLKAA 145 (226)
T ss_pred CCCCC-CHHHHHHHHHH----------HHhCCCeEEEECCCChHHhc--------------------cccccHHHHHhCC
Confidence 98742 35556666653 11123457788887665432 23588999995
Q ss_pred cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhc
Q psy14504 630 DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 630 ~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
.++.+.+++.+++.+++++.+.. .+ +.++++++++|++..
T Consensus 146 l~~~l~~pd~e~~~~iL~~~~~~-------~~--~~l~~ev~~~La~~~ 185 (226)
T PRK09087 146 TVVEIGEPDDALLSQVIFKLFAD-------RQ--LYVDPHVVYYLVSRM 185 (226)
T ss_pred ceeecCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHh
Confidence 49999999999999996665544 34 789999999999943
No 393
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=3.3e-09 Score=114.94 Aligned_cols=150 Identities=15% Similarity=0.216 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------CcCCCeEEEEehhhhhcCc
Q psy14504 51 DEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------SLLSKKILLLDIALLLAGT 115 (951)
Q Consensus 51 ~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~--------------~~~~~~~~~~~~~~l~~~~ 115 (951)
...+.+...+.+++.+| +||+||+|+||+++|+++|+.+.+..... .....+++.+... . +
T Consensus 9 ~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~---~-~ 84 (325)
T PRK06871 9 PTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPI---D-N 84 (325)
T ss_pred HHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccc---c-C
Confidence 44567777777766555 56889999999999999999987643110 1112234434321 0 1
Q ss_pred cccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHhhh
Q psy14504 116 KYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIE 190 (951)
Q Consensus 116 ~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~ 190 (951)
+.+ ....++.+.+.+. ..++..|++||++|.|. ..++|.|+..||. ..+++|.+|+.++ .
T Consensus 85 ~~I--~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~--------~~AaNaLLKtLEEPp~~~~fiL~t~~~~-----~ 149 (325)
T PRK06871 85 KDI--GVDQVREINEKVSQHAQQGGNKVVYIQGAERLT--------EAAANALLKTLEEPRPNTYFLLQADLSA-----A 149 (325)
T ss_pred CCC--CHHHHHHHHHHHhhccccCCceEEEEechhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChH-----h
Confidence 111 2334666655554 12345699999999994 4788999999985 5688888888887 8
Q ss_pred cCHHHhhcceEEEeeCCCHHHHHHHHHHH
Q psy14504 191 KDAAFERRFQKILVEEPDIEETISILRGL 219 (951)
Q Consensus 191 ~~~~l~~Rf~~i~~~~p~~~er~~il~~~ 219 (951)
+.|.++|||..+.|.+|+.++..+.|...
T Consensus 150 llpTI~SRC~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 150 LLPTIYSRCQTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred CchHHHhhceEEeCCCCCHHHHHHHHHHH
Confidence 99999999999999999999988887643
No 394
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.10 E-value=7.7e-10 Score=128.10 Aligned_cols=179 Identities=14% Similarity=0.188 Sum_probs=117.7
Q ss_pred CCCCCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC----
Q psy14504 41 GKLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---- 114 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~---- 114 (951)
..|++++|.+..++.+...+. .....+|||+|++||||+++|+++...... .+.+++.+||+.+...
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r-------~~~pfv~inC~~l~e~lles 281 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRLYARSDATVLILGESGTGKELVAQAIHQLSGR-------RDFPFVAINCGAIAESLLEA 281 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCcCHHHHHHHHHHhcCc-------CCCCEEEeccccCChhHHHH
Confidence 568899999999998888765 466689999999999999999999976422 2568888988765310
Q ss_pred ---ccccccHH----HHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cE
Q psy14504 115 ---TKYRGEFE----DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------EL 174 (951)
Q Consensus 115 ---~~~~g~~~----~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i 174 (951)
+...|.+. ..-..+|+.+ .+..|||||++.|. ...+..|+..++.+ ++
T Consensus 282 eLFG~~~gaftga~~~~~~Gl~e~A----~gGTLfLdeI~~Lp--------~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dv 349 (526)
T TIGR02329 282 ELFGYEEGAFTGARRGGRTGLIEAA----HRGTLFLDEIGEMP--------LPLQTRLLRVLEEREVVRVGGTEPVPVDV 349 (526)
T ss_pred HhcCCcccccccccccccccchhhc----CCceEEecChHhCC--------HHHHHHHHHHHhcCcEEecCCCceeeecc
Confidence 00001110 0112233333 24489999999994 46777888888644 34
Q ss_pred EEEEeecchHHHH--hhhcCHHHhhcceEEEeeCCCHHHHH----HHHHHHHHhhhhhcCCCCChHHHHH
Q psy14504 175 HCIGATTLNEYRQ--YIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHGVEITDPAIVA 238 (951)
Q Consensus 175 ~vI~at~~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~~er~----~il~~~~~~~~~~~~~~i~~~~l~~ 238 (951)
++|++|+.+.-.. .-...+.|..|+..+.+..|+..+|. .+++.++.++....++.+++++++.
T Consensus 350 RiIaat~~~l~~~v~~g~fr~dL~~rL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~ 419 (526)
T TIGR02329 350 RVVAATHCALTTAVQQGRFRRDLFYRLSILRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQV 419 (526)
T ss_pred eEEeccCCCHHHHhhhcchhHHHHHhcCCcEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 7999988764111 11233455557776777777666665 4456666665545566788888766
No 395
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=1.2e-09 Score=112.17 Aligned_cols=169 Identities=25% Similarity=0.333 Sum_probs=111.4
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcccccc-HHHHHHHHHHHHH---hcCCCe
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGE-FEDRLKKILKEIS---NNQKDI 139 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~l~~~~~~a~---~~~~~~ 139 (951)
.++||||+||.|||||.||+.||+.| +.++...|...+.. ..|+|+ .+..+..++..+. ......
T Consensus 96 ~KSNILLiGPTGsGKTlLAqTLAk~L----------nVPFaiADATtLTE-AGYVGEDVENillkLlqaadydV~rAerG 164 (408)
T COG1219 96 SKSNILLIGPTGSGKTLLAQTLAKIL----------NVPFAIADATTLTE-AGYVGEDVENILLKLLQAADYDVERAERG 164 (408)
T ss_pred eeccEEEECCCCCcHHHHHHHHHHHh----------CCCeeeccccchhh-ccccchhHHHHHHHHHHHcccCHHHHhCC
Confidence 35799999999999999999999999 77888778777765 347885 5656677776654 223356
Q ss_pred EEEEecccccccCCCC------CCchhHHhhhhhhccC-----------------------CcEEEEEeecchH------
Q psy14504 140 IIFIDELHTMIGTGKV------EGSIDAGNMLKPELSR-----------------------GELHCIGATTLNE------ 184 (951)
Q Consensus 140 iL~iDEid~l~~~~~~------~~~~~~~~~L~~~le~-----------------------~~i~vI~at~~~~------ 184 (951)
|++|||||.+...... -++..++++|+.++|. .++.+|+.+--..
T Consensus 165 IIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgGAF~GlekiI~ 244 (408)
T COG1219 165 IIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEFIQVDTSNILFICGGAFAGLEKIIK 244 (408)
T ss_pred eEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccceEEEcccceeEEeccccccHHHHHH
Confidence 9999999999865421 1234577888888842 1233322111000
Q ss_pred --------------------------HH-------HhhhcCHHHhhcceE-EEeeCCCHHHHHHHHH----HHHHhhhhh
Q psy14504 185 --------------------------YR-------QYIEKDAAFERRFQK-ILVEEPDIEETISILR----GLQKKYEVH 226 (951)
Q Consensus 185 --------------------------~~-------~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~----~~~~~~~~~ 226 (951)
++ -.+.+-|.|.-|++. ..+...+.++..+||. .+.++|...
T Consensus 245 ~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~Lde~aLv~ILtePkNAlvKQYq~L 324 (408)
T COG1219 245 KRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEELDEDALVQILTEPKNALVKQYQKL 324 (408)
T ss_pred HhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhhcCHHHHHHHHhcccHHHHHHHHHH
Confidence 00 012245666678876 6788889999988883 455555432
Q ss_pred ---c--CCCCChHHHHHHHHHh
Q psy14504 227 ---H--GVEITDPAIVAASELS 243 (951)
Q Consensus 227 ---~--~~~i~~~~l~~~~~~s 243 (951)
. .+.++++++.++++.+
T Consensus 325 f~~d~V~L~F~~~AL~~IA~~A 346 (408)
T COG1219 325 FEMDGVELEFTEEALKAIAKKA 346 (408)
T ss_pred hcccCceEEEcHHHHHHHHHHH
Confidence 2 2457788888777765
No 396
>PRK06620 hypothetical protein; Validated
Probab=99.10 E-value=1e-09 Score=112.88 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=84.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||||||||++++++++.. +..+ +..... .....+ ...+|+||||
T Consensus 46 ~l~l~Gp~G~GKThLl~a~~~~~---~~~~--~~~~~~------------------------~~~~~~--~~d~lliDdi 94 (214)
T PRK06620 46 TLLIKGPSSSGKTYLTKIWQNLS---NAYI--IKDIFF------------------------NEEILE--KYNAFIIEDI 94 (214)
T ss_pred eEEEECCCCCCHHHHHHHHHhcc---CCEE--cchhhh------------------------chhHHh--cCCEEEEecc
Confidence 69999999999999999988765 2111 110000 001111 2369999999
Q ss_pred cccCHH-HHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCc
Q psy14504 552 EKANSD-VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD 630 (951)
Q Consensus 552 d~~~~~-~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~ 630 (951)
|.+... ....+..+.+.| ..+++|++.++..+ .+ |++.+|+..
T Consensus 95 ~~~~~~~lf~l~N~~~e~g--------------~~ilits~~~p~~l---------------------~l-~~L~SRl~~ 138 (214)
T PRK06620 95 ENWQEPALLHIFNIINEKQ--------------KYLLLTSSDKSRNF---------------------TL-PDLSSRIKS 138 (214)
T ss_pred ccchHHHHHHHHHHHHhcC--------------CEEEEEcCCCcccc---------------------ch-HHHHHHHhC
Confidence 976432 222222222332 24566666555432 24 789999942
Q ss_pred --EEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhc
Q psy14504 631 --IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 631 --~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
++.+.+++.+++..++.+.... .+ +.++++++++|+...
T Consensus 139 gl~~~l~~pd~~~~~~~l~k~~~~-------~~--l~l~~ev~~~L~~~~ 179 (214)
T PRK06620 139 VLSILLNSPDDELIKILIFKHFSI-------SS--VTISRQIIDFLLVNL 179 (214)
T ss_pred CceEeeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHc
Confidence 8999999999998886655432 34 789999999999943
No 397
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.10 E-value=6.3e-10 Score=107.89 Aligned_cols=145 Identities=25% Similarity=0.383 Sum_probs=90.9
Q ss_pred cccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHH
Q psy14504 47 IGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLK 126 (951)
Q Consensus 47 vG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~ 126 (951)
+|++..+..+...+......+++++||||||||++++.+++.+.. .+.+++.+++..................
T Consensus 1 ~~~~~~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~-------~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 73 (151)
T cd00009 1 VGQEEAIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFR-------PGAPFLYLNASDLLEGLVVAELFGHFLV 73 (151)
T ss_pred CchHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhc-------CCCCeEEEehhhhhhhhHHHHHhhhhhH
Confidence 467888888888888777789999999999999999999998742 2567777776554422111110000001
Q ss_pred HHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc----CCcEEEEEeecchHHHHhhhcCHHHhhcce-E
Q psy14504 127 KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS----RGELHCIGATTLNEYRQYIEKDAAFERRFQ-K 201 (951)
Q Consensus 127 ~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le----~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~-~ 201 (951)
...........+.+|+|||++.+.... .......+..... ...+.+|++++.... ..+++.+.+||. .
T Consensus 74 ~~~~~~~~~~~~~~lilDe~~~~~~~~----~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~---~~~~~~~~~r~~~~ 146 (151)
T cd00009 74 RLLFELAEKAKPGVLFIDEIDSLSRGA----QNALLRVLETLNDLRIDRENVRVIGATNRPLL---GDLDRALYDRLDIR 146 (151)
T ss_pred hHHHHhhccCCCeEEEEeChhhhhHHH----HHHHHHHHHhcCceeccCCCeEEEEecCcccc---CCcChhHHhhhccE
Confidence 111122223457899999999872211 1122223333322 367889999887752 356788999996 3
Q ss_pred EEee
Q psy14504 202 ILVE 205 (951)
Q Consensus 202 i~~~ 205 (951)
+.++
T Consensus 147 i~~~ 150 (151)
T cd00009 147 IVIP 150 (151)
T ss_pred eecC
Confidence 6554
No 398
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.09 E-value=1e-09 Score=118.67 Aligned_cols=180 Identities=18% Similarity=0.285 Sum_probs=117.7
Q ss_pred HhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhc--
Q psy14504 437 LLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS-- 514 (951)
Q Consensus 437 ~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~-- 514 (951)
.+..-++||+..+..+........ ++.+|+.|+.|||||+++|+||..|-. --+...|.--.++..
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P~---------iggvLI~G~kGtaKSt~~Rala~LLp~---~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDPQ---------IGGALIAGEKGTAKSTLARALADLLPE---IEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhcccc---------cceeEEecCCCccHHHHHHHHHHhCCc---cceecCCCCCCCCCChh
Confidence 355678899998877766533222 246999999999999999999999921 111112210000000
Q ss_pred ---------------------hhcccCCCCC-----Cccc---------cccchhHHHHHhCCCeEEEEccccccCHHHH
Q psy14504 515 ---------------------ISRLIGAPPG-----YIGY---------EEGGYLTEIVRRKPYSLILLDEIEKANSDVF 559 (951)
Q Consensus 515 ---------------------~~~l~g~~~~-----~~g~---------~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~ 559 (951)
...+++.|.+ -+|. .....-...+.++..+||+|||+..++..++
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d~lv 161 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDDHLV 161 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccHHHH
Confidence 0012222221 1111 1111122345677889999999999999999
Q ss_pred HHHHHHhhcc-eeecCCCeEeec-CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCC
Q psy14504 560 NILLQILDDG-RLTDNRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYL 637 (951)
Q Consensus 560 ~~Ll~~le~g-~~~~~~g~~~~~-~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l 637 (951)
+.||..+++| ...-..|..+.. .++++|.|.|..- +.++|.|++||...|...++
T Consensus 162 d~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe-----------------------GeLrpqLlDRfg~~v~~~~~ 218 (423)
T COG1239 162 DALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE-----------------------GELRPQLLDRFGLEVDTHYP 218 (423)
T ss_pred HHHHHHHHhCCceeeeCceeeccCccEEEEeecCccc-----------------------cccchhhHhhhcceeeccCC
Confidence 9999999998 444455777654 6888999999742 35789999999988888776
Q ss_pred Ch-hhHHHHHHHHHH
Q psy14504 638 NR-KNILSIANIQLN 651 (951)
Q Consensus 638 ~~-~~~~~i~~~~l~ 651 (951)
+. ++..+|+.+.+.
T Consensus 219 ~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 219 LDLEERVEIIRRRLA 233 (423)
T ss_pred CCHHHHHHHHHHHHH
Confidence 55 666677665553
No 399
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.09 E-value=2.6e-10 Score=126.98 Aligned_cols=182 Identities=14% Similarity=0.226 Sum_probs=123.9
Q ss_pred CCCCCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC----
Q psy14504 41 GKLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---- 114 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~---- 114 (951)
....++||++..++++...+. ..+..+||+.|++||||..+|++|.+.-... +.+++.+||+++...
T Consensus 138 ~~~~~liG~S~am~~l~~~i~kvA~s~a~VLI~GESGtGKElvAr~IH~~S~R~-------~~PFVavNcaAip~~l~ES 210 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAKVAPSDASVLITGESGTGKELVARAIHQASPRA-------KGPFIAVNCAAIPENLLES 210 (464)
T ss_pred cccCCceecCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHhhCccc-------CCCceeeecccCCHHHHHH
Confidence 357799999999999888776 3667889999999999999999999876443 567888888655310
Q ss_pred ---ccccccHHHHH---HHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEE
Q psy14504 115 ---TKYRGEFEDRL---KKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELH 175 (951)
Q Consensus 115 ---~~~~g~~~~~l---~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~ 175 (951)
+.-.|.+.... ...|+.| .+..||||||..| ..+.|..|+..++.+ +++
T Consensus 211 ELFGhekGAFTGA~~~r~G~fE~A----~GGTLfLDEI~~m--------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvR 278 (464)
T COG2204 211 ELFGHEKGAFTGAITRRIGRFEQA----NGGTLFLDEIGEM--------PLELQVKLLRVLQEREFERVGGNKPIKVDVR 278 (464)
T ss_pred HhhcccccCcCCcccccCcceeEc----CCceEEeeccccC--------CHHHHHHHHHHHHcCeeEecCCCcccceeeE
Confidence 11112111111 1234443 2458999999998 357888888888643 578
Q ss_pred EEEeecchHHHHhhh---cCHHHhhcceEEEeeCCCHHHHH----HHHHHHHHhhhhhc---CCCCChHHHHHHHHH
Q psy14504 176 CIGATTLNEYRQYIE---KDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHH---GVEITDPAIVAASEL 242 (951)
Q Consensus 176 vI~at~~~~~~~~~~---~~~~l~~Rf~~i~~~~p~~~er~----~il~~~~~~~~~~~---~~~i~~~~l~~~~~~ 242 (951)
||++||.+--. ... .-+.|.-|+..+.+..|+..||. .+++++++++.... ...++++++..+..+
T Consensus 279 iIaaT~~dL~~-~v~~G~FReDLyyRLnV~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y 354 (464)
T COG2204 279 IIAATNRDLEE-EVAAGRFREDLYYRLNVVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAY 354 (464)
T ss_pred EEeecCcCHHH-HHHcCCcHHHHHhhhccceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 99999986421 111 23455558888888888877776 34466666554433 356888888776654
No 400
>KOG0373|consensus
Probab=99.09 E-value=2.1e-10 Score=110.21 Aligned_cols=118 Identities=24% Similarity=0.338 Sum_probs=85.0
Q ss_pred ccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHH----
Q psy14504 679 FDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLL---- 750 (951)
Q Consensus 679 ~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l---- 750 (951)
..|....|||||.+.+|..+.+--+ .-|...+||+||++|||-.|+++.-+++.+ +.++..++||||..-+
T Consensus 45 ~tPVTvCGDIHGQFyDL~eLFrtgG-~vP~tnYiFmGDfVDRGyySLEtfT~l~~LkaryP~~ITLlRGNHEsRqitqVY 123 (306)
T KOG0373|consen 45 STPVTVCGDIHGQFYDLLELFRTGG-QVPDTNYIFMGDFVDRGYYSLETFTLLLLLKARYPAKITLLRGNHESRQITQVY 123 (306)
T ss_pred CCCeeEeeccchhHHHHHHHHHhcC-CCCCcceEEeccccccccccHHHHHHHHHHhhcCCceeEEeeccchhhhhhhhh
Confidence 4577889999999888888887666 456889999999999999999999888776 4567899999997633
Q ss_pred HHHhhcccCCccccHHHhhCCCCHHHHHHHHhcCCce-EEeCCEEEEecccCcCCC
Q psy14504 751 DVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYYKKYLMIHAGVAKQWT 805 (951)
Q Consensus 751 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~~~~~vHAG~~p~~~ 805 (951)
.++.....+.+.... .+-.-+-+.-|++. +.++++++||||+.|+..
T Consensus 124 GFydECq~KYGnan~--------wkycckVFD~LtlaAiID~~vLCVHGGLSPdir 171 (306)
T KOG0373|consen 124 GFYDECQNKYGNANV--------WKYCCKVFDFLTLAAIIDEKVLCVHGGLSPDIR 171 (306)
T ss_pred hhHHHHHhhcCCchH--------HHHHHHHHhhhhHHHHhcCcEEEEcCCCCccce
Confidence 344333222221111 12233334445654 567899999999999854
No 401
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.09 E-value=3.3e-09 Score=107.73 Aligned_cols=176 Identities=16% Similarity=0.228 Sum_probs=118.1
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.++|.+..++.+.......-.| .|-.++||+|+.|||||++++++...+...+..++.+.-.++..-
T Consensus 27 ~~L~Gie~Qk~~l~~Nt~~Fl~G-----~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~l------- 94 (249)
T PF05673_consen 27 DDLIGIERQKEALIENTEQFLQG-----LPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGDL------- 94 (249)
T ss_pred HHhcCHHHHHHHHHHHHHHHHcC-----CCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhccH-------
Confidence 45678888888888877766555 345589999999999999999999999888888887776555432
Q ss_pred CCCCCCccccccchhHHHHHhC-CCeEEEEccccc-cCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCch--
Q psy14504 520 GAPPGYIGYEEGGYLTEIVRRK-PYSLILLDEIEK-ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD-- 595 (951)
Q Consensus 520 g~~~~~~g~~~~~~l~~~~~~~-~~~vl~iDEid~-~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~-- 595 (951)
..+...++.. ..=|||+|++.- ....-...|-.+||.|.. ....|++|.+|||.-.-
T Consensus 95 ------------~~l~~~l~~~~~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle-------~~P~NvliyATSNRRHLv~ 155 (249)
T PF05673_consen 95 ------------PELLDLLRDRPYKFILFCDDLSFEEGDTEYKALKSVLEGGLE-------ARPDNVLIYATSNRRHLVP 155 (249)
T ss_pred ------------HHHHHHHhcCCCCEEEEecCCCCCCCcHHHHHHHHHhcCccc-------cCCCcEEEEEecchhhccc
Confidence 1233444433 346999998742 234556788888886432 24578999999996321
Q ss_pred -hhhhhcc--ccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 596 -KIKEMEK--GDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 596 -~~~~~~~--~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
.+.+... ++.....+.+ ...+ .|-+||...+.|.|+++++..+|++..+.+
T Consensus 156 E~~~d~~~~~~~eih~~d~~----eEkl--SLsDRFGL~l~F~~~~q~~YL~IV~~~~~~ 209 (249)
T PF05673_consen 156 ESFSDREDIQDDEIHPSDTI----EEKL--SLSDRFGLWLSFYPPDQEEYLAIVRHYAER 209 (249)
T ss_pred hhhhhccCCCccccCcchHH----HHHH--hHHHhCCcEEEecCCCHHHHHHHHHHHHHH
Confidence 1111110 0000011111 1112 477999999999999999999998777644
No 402
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.08 E-value=1.7e-08 Score=105.42 Aligned_cols=115 Identities=22% Similarity=0.187 Sum_probs=83.2
Q ss_pred CeEEEEecccccccCCCCCCchhHHhhhhhhccCC-cEEEEEeecchH-------HHHhhhcCHHHhhcceEEEeeCCCH
Q psy14504 138 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLNE-------YRQYIEKDAAFERRFQKILVEEPDI 209 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-~i~vI~at~~~~-------~~~~~~~~~~l~~Rf~~i~~~~p~~ 209 (951)
|.||||||+|.| ..+...+|...|+.. .-++|.|||+-- +..-.-++..|+.|+-.|...+++.
T Consensus 292 pGVLFIDEvHmL--------DIE~FsFlnrAlEse~aPIii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~ 363 (450)
T COG1224 292 PGVLFIDEVHML--------DIECFSFLNRALESELAPIIILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSR 363 (450)
T ss_pred cceEEEechhhh--------hHHHHHHHHHHhhcccCcEEEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCH
Confidence 679999999998 356777888888753 345666666421 1112357789999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhHH
Q psy14504 210 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKI 269 (951)
Q Consensus 210 ~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~ 269 (951)
++..+|++.-++ ..++.+++++++.++.+...-. =+.++.|+.-+...++.
T Consensus 364 ~EireIi~iRa~----ee~i~l~~~Ale~L~~ig~etS-----LRYa~qLL~pa~iiA~~ 414 (450)
T COG1224 364 EEIREIIRIRAK----EEDIELSDDALEYLTDIGEETS-----LRYAVQLLTPASIIAKR 414 (450)
T ss_pred HHHHHHHHHhhh----hhccccCHHHHHHHHhhchhhh-----HHHHHHhccHHHHHHHH
Confidence 999999986655 3578999999999988754321 25566776655444443
No 403
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.07 E-value=1.3e-09 Score=125.95 Aligned_cols=185 Identities=14% Similarity=0.192 Sum_probs=116.6
Q ss_pred CCCCCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHH-cCCCCCCcCCCeEEEEehhhhhcC---
Q psy14504 41 GKLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPNSLLSKKILLLDIALLLAG--- 114 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~l~~~--- 114 (951)
..|++++|.+..++++...+. .....+|||+|++||||+++|+++...+. ..+....-.+.+++.+||+.+...
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lle 295 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLE 295 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHH
Confidence 368899999999998888765 45667999999999999999999998621 111111223678999998765310
Q ss_pred ----ccccccHHH----HHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------c
Q psy14504 115 ----TKYRGEFED----RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------E 173 (951)
Q Consensus 115 ----~~~~g~~~~----~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~ 173 (951)
+...|.+.. .-..+|+.+ .+..||||||+.|. ...+..|+.+++.+ +
T Consensus 296 seLFG~~~gaftga~~~~~~Gl~e~A----~gGTLfLdeI~~Lp--------~~~Q~kLl~~L~e~~~~r~G~~~~~~~d 363 (538)
T PRK15424 296 AELFGYEEGAFTGSRRGGRAGLFEIA----HGGTLFLDEIGEMP--------LPLQTRLLRVLEEKEVTRVGGHQPVPVD 363 (538)
T ss_pred HHhcCCccccccCccccccCCchhcc----CCCEEEEcChHhCC--------HHHHHHHHhhhhcCeEEecCCCceeccc
Confidence 000011000 011233333 24489999999994 46777888888653 3
Q ss_pred EEEEEeecchHHHH--hhhcCHHHhhcceEEEeeCCCHHHHH----HHHHHHHHhhhhhcCCCCChHHHH
Q psy14504 174 LHCIGATTLNEYRQ--YIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHGVEITDPAIV 237 (951)
Q Consensus 174 i~vI~at~~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~~er~----~il~~~~~~~~~~~~~~i~~~~l~ 237 (951)
+++|++|+.+--.. .-...+.|..|+..+.+..|+..||. .+++.++.++....+..++++++.
T Consensus 364 vRiIaat~~~L~~~v~~g~Fr~dL~yrL~~~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~ 433 (538)
T PRK15424 364 VRVISATHCDLEEDVRQGRFRRDLFYRLSILRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQ 433 (538)
T ss_pred eEEEEecCCCHHHHHhcccchHHHHHHhcCCeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 58999988763110 01133456668877777777777765 344556655433345567776654
No 404
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.07 E-value=1.7e-09 Score=133.87 Aligned_cols=181 Identities=18% Similarity=0.295 Sum_probs=122.0
Q ss_pred CCccccHHHHHHHHHHHHcC---------CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-
Q psy14504 44 DPVIGRDDEIRRAIQVLQRR---------SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA- 113 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~~~---------~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~- 113 (951)
..++||+..++.+...+.+. +...+||+||||||||++|+++|+.+... +.+++.++++....
T Consensus 565 ~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-------~~~~i~~d~s~~~~~ 637 (852)
T TIGR03346 565 ERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD-------EDAMVRIDMSEYMEK 637 (852)
T ss_pred cccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhhccc
Confidence 36899999999998877642 12358899999999999999999988543 34667777654321
Q ss_pred ---------CccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC------------
Q psy14504 114 ---------GTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 172 (951)
Q Consensus 114 ---------~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~------------ 172 (951)
...|.|-.+ -..+...++ ..+.+||||||++.+. .++++.|+++++.|
T Consensus 638 ~~~~~l~g~~~g~~g~~~--~g~l~~~v~-~~p~~vlllDeieka~--------~~v~~~Ll~~l~~g~l~d~~g~~vd~ 706 (852)
T TIGR03346 638 HSVARLIGAPPGYVGYEE--GGQLTEAVR-RKPYSVVLFDEVEKAH--------PDVFNVLLQVLDDGRLTDGQGRTVDF 706 (852)
T ss_pred chHHHhcCCCCCccCccc--ccHHHHHHH-cCCCcEEEEeccccCC--------HHHHHHHHHHHhcCceecCCCeEEec
Confidence 011222111 112223333 3445799999999884 47888899988654
Q ss_pred -cEEEEEeecchHH--HH------------------hhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhh---h-
Q psy14504 173 -ELHCIGATTLNEY--RQ------------------YIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEV---H- 226 (951)
Q Consensus 173 -~i~vI~at~~~~~--~~------------------~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~---~- 226 (951)
+.+||+|||...- .+ .-...|.|..|++. +.|.+++.++..+|+...+..... .
T Consensus 707 rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~ 786 (852)
T TIGR03346 707 RNTVIIMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAER 786 (852)
T ss_pred CCcEEEEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHC
Confidence 3458888886210 00 11245788889975 889999999999998766543221 1
Q ss_pred -cCCCCChHHHHHHHHH
Q psy14504 227 -HGVEITDPAIVAASEL 242 (951)
Q Consensus 227 -~~~~i~~~~l~~~~~~ 242 (951)
..+.++++++..++..
T Consensus 787 ~~~l~i~~~a~~~L~~~ 803 (852)
T TIGR03346 787 KITLELSDAALDFLAEA 803 (852)
T ss_pred CCeecCCHHHHHHHHHh
Confidence 2367899999988875
No 405
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.07 E-value=4.9e-10 Score=122.32 Aligned_cols=200 Identities=19% Similarity=0.289 Sum_probs=130.1
Q ss_pred CCCCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC-----
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG----- 114 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~----- 114 (951)
.+.++||++..+.+++..+. .++..+|||.|++||||..+|++|.+..... +.+++.+||+++...
T Consensus 221 ~~~~iIG~S~am~~ll~~i~~VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~-------~kPfV~~NCAAlPesLlESE 293 (550)
T COG3604 221 EVGGIIGRSPAMRQLLKEIEVVAKSDSTVLIRGETGTGKELVARAIHQLSPRR-------DKPFVKLNCAALPESLLESE 293 (550)
T ss_pred ccccceecCHHHHHHHHHHHHHhcCCCeEEEecCCCccHHHHHHHHHhhCccc-------CCCceeeeccccchHHHHHH
Confidence 56789999999999988765 4667899999999999999999999876443 567888888766421
Q ss_pred --ccccccHHHHHH---HHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEE
Q psy14504 115 --TKYRGEFEDRLK---KILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHC 176 (951)
Q Consensus 115 --~~~~g~~~~~l~---~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~v 176 (951)
+...|.+...+. .-|+-| .+.-||+|||..|. ...+..|+..++.+ +|+|
T Consensus 294 LFGHeKGAFTGA~~~r~GrFElA----dGGTLFLDEIGelP--------L~lQaKLLRvLQegEieRvG~~r~ikVDVRi 361 (550)
T COG3604 294 LFGHEKGAFTGAINTRRGRFELA----DGGTLFLDEIGELP--------LALQAKLLRVLQEGEIERVGGDRTIKVDVRV 361 (550)
T ss_pred HhcccccccccchhccCcceeec----CCCeEechhhccCC--------HHHHHHHHHHHhhcceeecCCCceeEEEEEE
Confidence 111122211111 112221 24579999999983 46778888888643 4789
Q ss_pred EEeecchHHHHhhhcCHHHhh----cceEEEeeCCCHHHHH----HHHHHHHHhhhhhcC---CCCChHHHHHHHHHhhh
Q psy14504 177 IGATTLNEYRQYIEKDAAFER----RFQKILVEEPDIEETI----SILRGLQKKYEVHHG---VEITDPAIVAASELSYR 245 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~----Rf~~i~~~~p~~~er~----~il~~~~~~~~~~~~---~~i~~~~l~~~~~~s~~ 245 (951)
|+|||.+-. +.. .+..|+. |+..+.+..|...||. -+..++++++....+ +.+++++++.+..+.
T Consensus 362 IAATNRDL~-~~V-~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~-- 437 (550)
T COG3604 362 IAATNRDLE-EMV-RDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYE-- 437 (550)
T ss_pred EeccchhHH-HHH-HcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCC--
Confidence 999998642 111 2333333 7777777777776665 333566666554444 578899988776652
Q ss_pred hcccCCCchhHHHHHHHHHHHh
Q psy14504 246 YISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 246 ~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
..+.-+....+++.|+-.+
T Consensus 438 ---wPGNVRELen~veRavlla 456 (550)
T COG3604 438 ---WPGNVRELENVVERAVLLA 456 (550)
T ss_pred ---CCCcHHHHHHHHHHHHHHh
Confidence 1122244555566665433
No 406
>KOG0745|consensus
Probab=99.05 E-value=2.6e-09 Score=113.94 Aligned_cols=168 Identities=23% Similarity=0.370 Sum_probs=114.4
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcccccc-HHHHHHHHHHHHH---hcCCCeE
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGE-FEDRLKKILKEIS---NNQKDII 140 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~~l~~~~~~a~---~~~~~~i 140 (951)
++||||.||+|+|||.||+.||+.+ +.++...|+..+.- ..|+|+ .+..+..++..|. +..+..|
T Consensus 226 KSNvLllGPtGsGKTllaqTLAr~l----------dVPfaIcDcTtLTQ-AGYVGeDVEsvi~KLl~~A~~nVekAQqGI 294 (564)
T KOG0745|consen 226 KSNVLLLGPTGSGKTLLAQTLARVL----------DVPFAICDCTTLTQ-AGYVGEDVESVIQKLLQEAEYNVEKAQQGI 294 (564)
T ss_pred cccEEEECCCCCchhHHHHHHHHHh----------CCCeEEecccchhh-cccccccHHHHHHHHHHHccCCHHHHhcCe
Confidence 5799999999999999999999999 88888889887764 347775 6777788887765 2234569
Q ss_pred EEEecccccccCCCC------CCchhHHhhhhhhccC---------------C--------cEEEEEeecchHHHH----
Q psy14504 141 IFIDELHTMIGTGKV------EGSIDAGNMLKPELSR---------------G--------ELHCIGATTLNEYRQ---- 187 (951)
Q Consensus 141 L~iDEid~l~~~~~~------~~~~~~~~~L~~~le~---------------~--------~i~vI~at~~~~~~~---- 187 (951)
+||||+|.+.....+ -++..++..|+.++|. + .|.+|+..-.....+
T Consensus 295 VflDEvDKi~~~~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~r 374 (564)
T KOG0745|consen 295 VFLDEVDKITKKAESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISR 374 (564)
T ss_pred EEEehhhhhcccCccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHH
Confidence 999999999843221 2234577788888841 1 233333221110000
Q ss_pred -----------------------------------------------hhhcCHHHhhcceE-EEeeCCCHHHHHHHHH--
Q psy14504 188 -----------------------------------------------YIEKDAAFERRFQK-ILVEEPDIEETISILR-- 217 (951)
Q Consensus 188 -----------------------------------------------~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~-- 217 (951)
.+-+-|.|.-||+. +.|...+.+++.++|.
T Consensus 375 R~~d~slGFg~~s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEP 454 (564)
T KOG0745|consen 375 RLDDKSLGFGAPSSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEP 454 (564)
T ss_pred hhcchhcccCCCCCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcc
Confidence 11234567779986 8899999999998883
Q ss_pred --HHHHhhhhhc-----CCCCChHHHHHHHHHh
Q psy14504 218 --GLQKKYEVHH-----GVEITDPAIVAASELS 243 (951)
Q Consensus 218 --~~~~~~~~~~-----~~~i~~~~l~~~~~~s 243 (951)
.+..+|.... .+.+++++++.+++++
T Consensus 455 knaL~~Qyk~lf~~~nV~L~fTe~Al~~IAq~A 487 (564)
T KOG0745|consen 455 KNALGKQYKKLFGMDNVELHFTEKALEAIAQLA 487 (564)
T ss_pred hhhHHHHHHHHhccCCeeEEecHHHHHHHHHHH
Confidence 4445544322 2457888888888776
No 407
>KOG2680|consensus
Probab=99.05 E-value=1.5e-09 Score=110.22 Aligned_cols=102 Identities=21% Similarity=0.394 Sum_probs=79.8
Q ss_pred CeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccCh
Q psy14504 543 YSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 622 (951)
Q Consensus 543 ~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 622 (951)
++||||||++.++-+....|...+++ ++ ..++|++||.+-..+......+ -..++-
T Consensus 289 pGVLFIDEvHMLDIEcFsFlNrAlE~-----------d~-~PiiimaTNrgit~iRGTn~~S------------phGiP~ 344 (454)
T KOG2680|consen 289 PGVLFIDEVHMLDIECFSFLNRALEN-----------DM-APIIIMATNRGITRIRGTNYRS------------PHGIPI 344 (454)
T ss_pred cceEEEeeehhhhhHHHHHHHHHhhh-----------cc-CcEEEEEcCCceEEeecCCCCC------------CCCCcH
Confidence 79999999999999999999999996 33 3467889998766554322111 134678
Q ss_pred hHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhc
Q psy14504 623 EFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 623 ~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
+|++|. .+|...|++++|+++| +..++...+ +.++++|++.|...+
T Consensus 345 D~lDR~-lII~t~py~~~d~~~I-------L~iRc~EEd--v~m~~~A~d~Lt~i~ 390 (454)
T KOG2680|consen 345 DLLDRM-LIISTQPYTEEDIKKI-------LRIRCQEED--VEMNPDALDLLTKIG 390 (454)
T ss_pred HHhhhh-heeecccCcHHHHHHH-------HHhhhhhhc--cccCHHHHHHHHHhh
Confidence 999999 7999999999999999 445555555 788899999998744
No 408
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.05 E-value=2.4e-09 Score=117.30 Aligned_cols=205 Identities=18% Similarity=0.234 Sum_probs=130.0
Q ss_pred hcCCCCCccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK 116 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~ 116 (951)
....++++||.+..++++++.+.+ +...+||++|++||||+.+|+.|....... ...+++.+||+.+..+..
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~------~~~PFI~~NCa~~~en~~ 146 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAYAPSGLPVLIIGETGTGKELFARLIHALSARR------AEAPFIAFNCAAYSENLQ 146 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhhCCCCCcEEEecCCCccHHHHHHHHHHhhhcc------cCCCEEEEEHHHhCcCHH
Confidence 445788999999988888887764 555689999999999999999999443221 267889999977643211
Q ss_pred -----------ccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------
Q psy14504 117 -----------YRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------- 172 (951)
Q Consensus 117 -----------~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~------------- 172 (951)
+.| ....-..+|+.| ...+||+|||+.|.+ +.+..|+.+++.+
T Consensus 147 ~~eLFG~~kGaftG-a~~~k~Glfe~A----~GGtLfLDEI~~LP~--------~~Q~kLl~~le~g~~~rvG~~~~~~~ 213 (403)
T COG1221 147 EAELFGHEKGAFTG-AQGGKAGLFEQA----NGGTLFLDEIHRLPP--------EGQEKLLRVLEEGEYRRVGGSQPRPV 213 (403)
T ss_pred HHHHhccccceeec-ccCCcCchheec----CCCEEehhhhhhCCH--------hHHHHHHHHHHcCceEecCCCCCcCC
Confidence 122 111222344444 245899999999955 5666788888653
Q ss_pred cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHH----HHHHHHHHhhhhhcCCCCCh---HHHHHHHHHhhh
Q psy14504 173 ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHGVEITD---PAIVAASELSYR 245 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~----~il~~~~~~~~~~~~~~i~~---~~l~~~~~~s~~ 245 (951)
+|++|+|||...-..... ...|.+|...+.+..|+..||. .++++++..+....+..++. +++..+....
T Consensus 214 dVRli~AT~~~l~~~~~~-g~dl~~rl~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~-- 290 (403)
T COG1221 214 DVRLICATTEDLEEAVLA-GADLTRRLNILTITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYD-- 290 (403)
T ss_pred CceeeeccccCHHHHHHh-hcchhhhhcCceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC--
Confidence 578999999765222221 1366676666666666666654 44466666655555544433 4444443321
Q ss_pred hcccCCCchhHHHHHHHHHHHhH
Q psy14504 246 YISDRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 246 ~~~~~~~p~~a~~ll~~a~~~~~ 268 (951)
-.+.-+...++++.+|....
T Consensus 291 ---~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 291 ---WPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred ---CCCcHHHHHHHHHHHHHHhc
Confidence 11122556677777777654
No 409
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.05 E-value=9.2e-09 Score=120.57 Aligned_cols=201 Identities=17% Similarity=0.194 Sum_probs=128.6
Q ss_pred CCCCccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC-----
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG----- 114 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~----- 114 (951)
.+.++||++..++.+...+.+ ....+|||+|++|||||++|+++...... .+.+++.+||..+...
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r-------~~~p~v~v~c~~~~~~~~e~~ 257 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASDLNVLILGETGVGKELVARAIHAASPR-------ADKPLVYLNCAALPESLAESE 257 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCCc-------CCCCeEEEEcccCChHHHHHH
Confidence 677899999999888887663 56678999999999999999999986532 2568888988765310
Q ss_pred ---c---cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEE
Q psy14504 115 ---T---KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELH 175 (951)
Q Consensus 115 ---~---~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~ 175 (951)
. .+.|.... -...+..+ .+..|||||++.|. .+.+..|..+++.+ +++
T Consensus 258 lfG~~~g~~~ga~~~-~~g~~~~a----~gGtL~ldeI~~L~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~R 324 (509)
T PRK05022 258 LFGHVKGAFTGAISN-RSGKFELA----DGGTLFLDEIGELP--------LALQAKLLRVLQYGEIQRVGSDRSLRVDVR 324 (509)
T ss_pred hcCccccccCCCccc-CCcchhhc----CCCEEEecChhhCC--------HHHHHHHHHHHhcCCEeeCCCCcceecceE
Confidence 0 00010000 01123322 24579999999994 36677787777543 468
Q ss_pred EEEeecchHHH--HhhhcCHHHhhcceEEEeeCCCHHHHH----HHHHHHHHhhhhh---cCCCCChHHHHHHHHHhhhh
Q psy14504 176 CIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVH---HGVEITDPAIVAASELSYRY 246 (951)
Q Consensus 176 vI~at~~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~er~----~il~~~~~~~~~~---~~~~i~~~~l~~~~~~s~~~ 246 (951)
+|++|+.+-.. ..-...+.|..|+..+.|..|+..+|. .+++.++.++... ..+.+++++++.+..+.
T Consensus 325 iI~~t~~~l~~~~~~~~f~~dL~~rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~--- 401 (509)
T PRK05022 325 VIAATNRDLREEVRAGRFRADLYHRLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYD--- 401 (509)
T ss_pred EEEecCCCHHHHHHcCCccHHHHhcccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCC---
Confidence 99999875311 111345667778887777777776665 4445666655433 23678999988777652
Q ss_pred cccCCCchhHHHHHHHHHHHh
Q psy14504 247 ISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 247 ~~~~~~p~~a~~ll~~a~~~~ 267 (951)
..+.-+...++++.++..+
T Consensus 402 --WPGNvrEL~~~i~ra~~~~ 420 (509)
T PRK05022 402 --WPGNVRELEHVISRAALLA 420 (509)
T ss_pred --CCCcHHHHHHHHHHHHHhc
Confidence 1111134455555655443
No 410
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.03 E-value=4.5e-09 Score=114.68 Aligned_cols=153 Identities=15% Similarity=0.149 Sum_probs=103.2
Q ss_pred HHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCC-C-C-------------CcCCCeEEEEehhhhh----
Q psy14504 52 EIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEV-P-N-------------SLLSKKILLLDIALLL---- 112 (951)
Q Consensus 52 ~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~-~-~-------------~~~~~~~~~~~~~~l~---- 112 (951)
..+++... ..+-+..+||+||+|+||+++|+.+|+.+.+... + . ......++.+......
T Consensus 9 ~~~~l~~~-~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~ 87 (342)
T PRK06964 9 DWNRLQAL-RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAP 87 (342)
T ss_pred HHHHHHHh-cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccccccc
Confidence 34455553 3444556789999999999999999999877431 1 0 1112233333222100
Q ss_pred -------------cCcc---c-cccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC-
Q psy14504 113 -------------AGTK---Y-RGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR- 171 (951)
Q Consensus 113 -------------~~~~---~-~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~- 171 (951)
.+.+ . ..-....++.+...+.. .++..|++||++|.|.. .++|.|+..||.
T Consensus 88 ~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~--------~AaNaLLKtLEEP 159 (342)
T PRK06964 88 GAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV--------AAANALLKTLEEP 159 (342)
T ss_pred ccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH--------HHHHHHHHHhcCC
Confidence 0000 0 01123356666665531 23456999999999954 788999999984
Q ss_pred -CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHH
Q psy14504 172 -GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRG 218 (951)
Q Consensus 172 -~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~ 218 (951)
..+++|.+|+.++ .+.|.++|||..+.|++|+.++..+.|..
T Consensus 160 p~~t~fiL~t~~~~-----~LLpTI~SRcq~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 160 PPGTVFLLVSARID-----RLLPTILSRCRQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred CcCcEEEEEECChh-----hCcHHHHhcCEEEEecCCCHHHHHHHHHH
Confidence 5688888998888 89999999999999999999999888864
No 411
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.03 E-value=6.1e-09 Score=126.83 Aligned_cols=182 Identities=18% Similarity=0.301 Sum_probs=119.0
Q ss_pred CCCCCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC----
Q psy14504 41 GKLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---- 114 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~---- 114 (951)
.+|++++|++..++.+.+.+. .....+|||+|++|||||++|+++...... .+.+++.++|..+...
T Consensus 373 ~~~~~liG~S~~~~~~~~~~~~~a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r-------~~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 373 SEFGEIIGRSEAMYSVLKQVEMVAQSDSTVLILGETGTGKELIARAIHNLSGR-------NNRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred ccccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecccCChhHhhh
Confidence 478899999999988877655 355678999999999999999999986532 2568888888765311
Q ss_pred ---c----cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC-------------CcE
Q psy14504 115 ---T----KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-------------GEL 174 (951)
Q Consensus 115 ---~----~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-------------~~i 174 (951)
+ .+.|...... ..+..+ .+.+|||||++.|. .+.+..|..+++. .++
T Consensus 446 ~lfg~~~~~~~g~~~~~~-g~le~a----~~GtL~Ldei~~L~--------~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 446 DLFGHERGAFTGASAQRI-GRFELA----DKSSLFLDEVGDMP--------LELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hhcCcccccccccccchh-hHHHhc----CCCeEEEechhhCC--------HHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 0 0111111111 223322 24589999999984 3666777777743 246
Q ss_pred EEEEeecchHHH--HhhhcCHHHhhcceEEEeeCCCHHHHHH----HHHHHHHhhhhhcC---CCCChHHHHHHHHH
Q psy14504 175 HCIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETIS----ILRGLQKKYEVHHG---VEITDPAIVAASEL 242 (951)
Q Consensus 175 ~vI~at~~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~er~~----il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 242 (951)
++|++|+.+--. ..-.....+..|+..+.+..|+..+|.+ +++.++.++....+ ..+++++++.+...
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y 589 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNM 589 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 899999875311 1112345566688777788887777764 44566555443333 24788888776554
No 412
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.03 E-value=2.8e-09 Score=122.67 Aligned_cols=214 Identities=17% Similarity=0.154 Sum_probs=132.9
Q ss_pred hcchHHHHhcCCCCCccccHHHHHHHHHHHHcCC-----CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 31 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRS-----KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 31 ~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~-----~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
..+|+++|+|.++++++-+.+-++.+..++...- ..-+||+|||||||||+++.||+++ +..+.+
T Consensus 6 ~~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~el----------g~~v~E 75 (519)
T PF03215_consen 6 SEPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKEL----------GFEVQE 75 (519)
T ss_pred cCccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHh----------CCeeEE
Confidence 4689999999999999999988888888876421 2336788999999999999999998 333333
Q ss_pred Ee-hhhh----------h----cCccccccHHHHHHHH-HHHHHh----------cCCCeEEEEecccccccCCCCCCch
Q psy14504 106 LD-IALL----------L----AGTKYRGEFEDRLKKI-LKEISN----------NQKDIIIFIDELHTMIGTGKVEGSI 159 (951)
Q Consensus 106 ~~-~~~l----------~----~~~~~~g~~~~~l~~~-~~~a~~----------~~~~~iL~iDEid~l~~~~~~~~~~ 159 (951)
-. .... . ....+..... ....+ +...+. ...+.||+|||+-.++... ..
T Consensus 76 w~np~~~~~~~~~~~d~~s~~~~~~~f~sq~~-~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~----~~ 150 (519)
T PF03215_consen 76 WINPVSFRESDNQEDDFESDFNKFDEFLSQSD-KFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRD----TS 150 (519)
T ss_pred ecCCCCccccccccccccccccccccccchhh-hhccccccccccccccccCCCcCCCceEEEeeccccccchh----HH
Confidence 21 1110 0 0000111111 12222 111110 1246799999998765533 24
Q ss_pred hHHhhhhhhccCC---cEEEEEe-e-cc---hHH-----HHhhhcCHHHhh--cceEEEeeCCCHHHHHHHHHHHHHhh-
Q psy14504 160 DAGNMLKPELSRG---ELHCIGA-T-TL---NEY-----RQYIEKDAAFER--RFQKILVEEPDIEETISILRGLQKKY- 223 (951)
Q Consensus 160 ~~~~~L~~~le~~---~i~vI~a-t-~~---~~~-----~~~~~~~~~l~~--Rf~~i~~~~p~~~er~~il~~~~~~~- 223 (951)
...+.|+.++..+ .+++|.+ + +. ..+ .-.-.+++.++. ++..|.|.+-...-....|+.++...
T Consensus 151 ~f~~~L~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~ 230 (519)
T PF03215_consen 151 RFREALRQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEA 230 (519)
T ss_pred HHHHHHHHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHh
Confidence 5666777777543 4555555 1 00 000 001134566766 44569999999999988888887753
Q ss_pred hhhcC-CCCC--hHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q psy14504 224 EVHHG-VEIT--DPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 224 ~~~~~-~~i~--~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 265 (951)
....+ .... .+.++.++..+.|++ +.|+..|+..|.
T Consensus 231 ~~~~~~~~~p~~~~~l~~I~~~s~GDI------RsAIn~LQf~~~ 269 (519)
T PF03215_consen 231 RSSSGKNKVPDKQSVLDSIAESSNGDI------RSAINNLQFWCL 269 (519)
T ss_pred hhhcCCccCCChHHHHHHHHHhcCchH------HHHHHHHHHHhc
Confidence 11112 1222 345889999999999 889988888775
No 413
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.03 E-value=8e-11 Score=113.27 Aligned_cols=111 Identities=19% Similarity=0.318 Sum_probs=70.1
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHH-------HHHHHHHHHHHhcCCCe
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE-------DRLKKILKEISNNQKDI 139 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~-------~~l~~~~~~a~~~~~~~ 139 (951)
+|||+||||||||++|+.+|+.+ +.+++.+.++.........|... ..-..+...+. .+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~----------~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~---~~~ 67 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL----------GRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMR---KGG 67 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH----------TCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHH---EEE
T ss_pred CEEEECCCCCCHHHHHHHHHHHh----------hcceEEEEeccccccccceeeeeeccccccccccccccccc---cee
Confidence 58999999999999999999998 67787777654321111111110 00011111111 467
Q ss_pred EEEEecccccccCCCCCCchhHHhhhhhhccC---------------C------cEEEEEeecchHHHHhhhcCHHHhhc
Q psy14504 140 IIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---------------G------ELHCIGATTLNEYRQYIEKDAAFERR 198 (951)
Q Consensus 140 iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~---------------~------~i~vI~at~~~~~~~~~~~~~~l~~R 198 (951)
|++|||++... .++.+.|.++++. . .+++|+|+|+.. .....++++|++|
T Consensus 68 il~lDEin~a~--------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~-~~~~~l~~al~~R 138 (139)
T PF07728_consen 68 ILVLDEINRAP--------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRD-KGRKELSPALLDR 138 (139)
T ss_dssp EEEESSCGG----------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST---TTTTCHHHHTT
T ss_pred EEEECCcccCC--------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCC-CCcCcCCHHHHhh
Confidence 99999999873 3566666666632 1 289999999877 4456899999999
Q ss_pred c
Q psy14504 199 F 199 (951)
Q Consensus 199 f 199 (951)
|
T Consensus 139 f 139 (139)
T PF07728_consen 139 F 139 (139)
T ss_dssp -
T ss_pred C
Confidence 8
No 414
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=5.4e-09 Score=115.70 Aligned_cols=217 Identities=18% Similarity=0.193 Sum_probs=138.6
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC--CceEEeccccccchhchh---
Q psy14504 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSIS--- 516 (951)
Q Consensus 442 v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~--- 516 (951)
+.+.+..+..+...+...-.+. .|. +++++||||||||.+++.+.+.+.... ..++++||..+.....+.
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~----~p~-n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i 93 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGE----RPS-NIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKI 93 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCC----CCc-cEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHH
Confidence 4566666777777776544332 233 699999999999999999999994432 227999999988775442
Q ss_pred -cccCCCCCCcccccc---chhHHHHH-hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecC
Q psy14504 517 -RLIGAPPGYIGYEEG---GYLTEIVR-RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 591 (951)
Q Consensus 517 -~l~g~~~~~~g~~~~---~~l~~~~~-~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 591 (951)
.-++.. ...|.... ..+.+.+. ....-||++||+|.+...-.+.|+.++.-..- ...++.+|+.+|
T Consensus 94 ~~~~~~~-p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~--------~~~~v~vi~i~n 164 (366)
T COG1474 94 LNKLGKV-PLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGE--------NKVKVSIIAVSN 164 (366)
T ss_pred HHHcCCC-CCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccc--------cceeEEEEEEec
Confidence 222322 23343332 22333333 35567999999999887655777777663210 134567888888
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccC-cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 670 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~-~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 670 (951)
.-. +...+.|-+.+++. ..|.|+|++.+++..|+....+.. -..-.+++.+
T Consensus 165 ~~~---------------------~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~-------~~~~~~~~~v 216 (366)
T COG1474 165 DDK---------------------FLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEG-------FSAGVIDDDV 216 (366)
T ss_pred cHH---------------------HHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhh-------ccCCCcCccH
Confidence 521 12234555555553 368999999999999966555432 2235788999
Q ss_pred HHHHHHhcccccccccccccchHHHHHHHHhhc
Q psy14504 671 LKKISNIGFDLIYGARDVHGCKKSLSILLKKIH 703 (951)
Q Consensus 671 ~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~ 703 (951)
++.++...... -||.....+.+....+...
T Consensus 217 l~lia~~~a~~---~GDAR~aidilr~A~eiAe 246 (366)
T COG1474 217 LKLIAALVAAE---SGDARKAIDILRRAGEIAE 246 (366)
T ss_pred HHHHHHHHHHc---CccHHHHHHHHHHHHHHHH
Confidence 99998743222 2377777666776665544
No 415
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.01 E-value=3.1e-09 Score=128.75 Aligned_cols=183 Identities=15% Similarity=0.209 Sum_probs=119.2
Q ss_pred CCCCCccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC---c
Q psy14504 41 GKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---T 115 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~---~ 115 (951)
.+|++++|.+..+++++..+.+ ....+|||+|++||||+++|+++.+.... .+.+++.+||+.+... +
T Consensus 322 ~~~~~l~g~s~~~~~~~~~~~~~a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r-------~~~pfv~vnc~~~~~~~~~~ 394 (638)
T PRK11388 322 HTFDHMPQDSPQMRRLIHFGRQAAKSSFPVLLCGEEGVGKALLAQAIHNESER-------AAGPYIAVNCQLYPDEALAE 394 (638)
T ss_pred ccccceEECCHHHHHHHHHHHHHhCcCCCEEEECCCCcCHHHHHHHHHHhCCc-------cCCCeEEEECCCCChHHHHH
Confidence 3799999999998888876653 55678999999999999999999986532 2568889998665310 0
Q ss_pred ccccc----HHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEEEE
Q psy14504 116 KYRGE----FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIG 178 (951)
Q Consensus 116 ~~~g~----~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~vI~ 178 (951)
...|. ........|+. ..+.+||||||+.|. .+.+..|..+++.+ ++++|+
T Consensus 395 elfg~~~~~~~~~~~g~~~~----a~~GtL~ldei~~l~--------~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~ 462 (638)
T PRK11388 395 EFLGSDRTDSENGRLSKFEL----AHGGTLFLEKVEYLS--------PELQSALLQVLKTGVITRLDSRRLIPVDVRVIA 462 (638)
T ss_pred HhcCCCCcCccCCCCCceeE----CCCCEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEE
Confidence 00010 00000011221 234589999999994 46777888888644 467999
Q ss_pred eecchHHH--HhhhcCHHHhhcceEEEeeCCCHHHHH----HHHHHHHHhhhhhc--CCCCChHHHHHHHHH
Q psy14504 179 ATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHH--GVEITDPAIVAASEL 242 (951)
Q Consensus 179 at~~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~er~----~il~~~~~~~~~~~--~~~i~~~~l~~~~~~ 242 (951)
||+.+... ..-...+.|..|+..+.+..|+..+|. .+++.++.++.... .+.+++++++.+...
T Consensus 463 ~t~~~l~~~~~~~~f~~dL~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y 534 (638)
T PRK11388 463 TTTADLAMLVEQNRFSRQLYYALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSY 534 (638)
T ss_pred eccCCHHHHHhcCCChHHHhhhhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcC
Confidence 98875311 111234556668877778888777775 34455555543222 356889988877765
No 416
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.01 E-value=3.9e-09 Score=123.57 Aligned_cols=184 Identities=16% Similarity=0.207 Sum_probs=118.8
Q ss_pred hcCCCCCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc---
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA--- 113 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~--- 113 (951)
...+|++++|.+..+++++..+. .....+|||+|++||||+++|+++...... ...+++.++|+.+..
T Consensus 199 ~~~~f~~~ig~s~~~~~~~~~~~~~A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r-------~~~pfv~inca~~~~~~~ 271 (520)
T PRK10820 199 DDSAFSQIVAVSPKMRQVVEQARKLAMLDAPLLITGDTGTGKDLLAYACHLRSPR-------GKKPFLALNCASIPDDVV 271 (520)
T ss_pred ccccccceeECCHHHHHHHHHHHHHhCCCCCEEEECCCCccHHHHHHHHHHhCCC-------CCCCeEEeccccCCHHHH
Confidence 34589999999998888887665 355678999999999999999998765422 145788888866531
Q ss_pred -----Cc---cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------
Q psy14504 114 -----GT---KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------- 172 (951)
Q Consensus 114 -----~~---~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~------------- 172 (951)
|. .+.|..+ ....+|+.+ .+..|||||++.|.+ ..+..|..+++.+
T Consensus 272 e~elFG~~~~~~~~~~~-~~~g~~e~a----~~GtL~LdeI~~L~~--------~~Q~~Ll~~l~~~~~~~~g~~~~~~~ 338 (520)
T PRK10820 272 ESELFGHAPGAYPNALE-GKKGFFEQA----NGGSVLLDEIGEMSP--------RMQAKLLRFLNDGTFRRVGEDHEVHV 338 (520)
T ss_pred HHHhcCCCCCCcCCccc-CCCChhhhc----CCCEEEEeChhhCCH--------HHHHHHHHHHhcCCcccCCCCcceee
Confidence 00 0011000 011233333 244799999999944 5666777777543
Q ss_pred cEEEEEeecchHHH--HhhhcCHHHhhcceEEEeeCCCHHHHH----HHHHHHHHhhhhhcC---CCCChHHHHHHHHH
Q psy14504 173 ELHCIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG---VEITDPAIVAASEL 242 (951)
Q Consensus 173 ~i~vI~at~~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~er~----~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 242 (951)
++++|++|+.+.-. ..-...+.|..|+..+.+..|+..+|. .+++.++.++....+ ..+++++++.+...
T Consensus 339 ~vRiI~st~~~l~~l~~~g~f~~dL~~rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y 417 (520)
T PRK10820 339 DVRVICATQKNLVELVQKGEFREDLYYRLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRY 417 (520)
T ss_pred eeEEEEecCCCHHHHHHcCCccHHHHhhcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcC
Confidence 46889988765311 111245678889887777777666665 344555555443333 36888888766554
No 417
>PRK12377 putative replication protein; Provisional
Probab=99.01 E-value=1.4e-09 Score=113.65 Aligned_cols=106 Identities=23% Similarity=0.386 Sum_probs=73.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||||||||+||.+|++.+...+..+..+..+++....... +........+...+ ....+|+|||+
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~~~--------~~~~~~~~~~l~~l--~~~dLLiIDDl 172 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLHES--------YDNGQSGEKFLQEL--CKVDLLVLDEI 172 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHHHH--------HhccchHHHHHHHh--cCCCEEEEcCC
Confidence 699999999999999999999998777788888887766532111 10000111122223 34569999999
Q ss_pred --cccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhh
Q psy14504 552 --EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 597 (951)
Q Consensus 552 --d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 597 (951)
+..++..++.|+++++... ....-.|+|||.....+
T Consensus 173 g~~~~s~~~~~~l~~ii~~R~----------~~~~ptiitSNl~~~~l 210 (248)
T PRK12377 173 GIQRETKNEQVVLNQIIDRRT----------ASMRSVGMLTNLNHEAM 210 (248)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----------hcCCCEEEEcCCCHHHH
Confidence 5677888999999999621 11234688999987665
No 418
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.01 E-value=7.1e-09 Score=112.06 Aligned_cols=150 Identities=13% Similarity=0.096 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC-------------CcCCCeEEEEehhhhhcCc
Q psy14504 50 DDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN-------------SLLSKKILLLDIALLLAGT 115 (951)
Q Consensus 50 ~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~-------------~~~~~~~~~~~~~~l~~~~ 115 (951)
.+..+++...+.+++.+| +||+||.|+||+++|+.+|+.+.+.+.+. .....+++.+.... .+
T Consensus 9 ~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~---~~ 85 (319)
T PRK06090 9 VPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK---EG 85 (319)
T ss_pred HHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc---CC
Confidence 345567777777666665 67889999999999999999987644211 11223444443311 01
Q ss_pred cccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHhhh
Q psy14504 116 KYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIE 190 (951)
Q Consensus 116 ~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~ 190 (951)
+.+ ....++.+.+.+. ..++..|++||++|.|. ..++|.|+..+|. ..+++|.+|+.++ .
T Consensus 86 ~~I--~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~--------~~AaNaLLKtLEEPp~~t~fiL~t~~~~-----~ 150 (319)
T PRK06090 86 KSI--TVEQIRQCNRLAQESSQLNGYRLFVIEPADAMN--------ESASNALLKTLEEPAPNCLFLLVTHNQK-----R 150 (319)
T ss_pred CcC--CHHHHHHHHHHHhhCcccCCceEEEecchhhhC--------HHHHHHHHHHhcCCCCCeEEEEEECChh-----h
Confidence 111 1224455544443 12345799999999994 4788999999985 4688888888887 8
Q ss_pred cCHHHhhcceEEEeeCCCHHHHHHHHH
Q psy14504 191 KDAAFERRFQKILVEEPDIEETISILR 217 (951)
Q Consensus 191 ~~~~l~~Rf~~i~~~~p~~~er~~il~ 217 (951)
+.|.++|||..+.|++|+.++..+.|.
T Consensus 151 lLpTI~SRCq~~~~~~~~~~~~~~~L~ 177 (319)
T PRK06090 151 LLPTIVSRCQQWVVTPPSTAQAMQWLK 177 (319)
T ss_pred ChHHHHhcceeEeCCCCCHHHHHHHHH
Confidence 999999999999999999998888775
No 419
>PRK08116 hypothetical protein; Validated
Probab=99.01 E-value=3.1e-09 Score=113.25 Aligned_cols=108 Identities=17% Similarity=0.345 Sum_probs=73.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||||||||+||.+|++.+...+.+++.++.+++....... +... +......+...+. ...+|+|||+
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~--~~~~----~~~~~~~~~~~l~--~~dlLviDDl 187 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKST--YKSS----GKEDENEIIRSLV--NADLLILDDL 187 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--Hhcc----ccccHHHHHHHhc--CCCEEEEecc
Confidence 599999999999999999999997667788888887765431111 1100 0001112223333 3469999999
Q ss_pred --cccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhh
Q psy14504 552 --EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 597 (951)
Q Consensus 552 --d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 597 (951)
++..+..++.|+.+++.. ......+|+|||..+..+
T Consensus 188 g~e~~t~~~~~~l~~iin~r----------~~~~~~~IiTsN~~~~eL 225 (268)
T PRK08116 188 GAERDTEWAREKVYNIIDSR----------YRKGLPTIVTTNLSLEEL 225 (268)
T ss_pred cCCCCCHHHHHHHHHHHHHH----------HHCCCCEEEECCCCHHHH
Confidence 667888999999999852 112345889999987654
No 420
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=99.00 E-value=2.6e-09 Score=112.57 Aligned_cols=199 Identities=17% Similarity=0.248 Sum_probs=109.1
Q ss_pred ccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcC-CCeEEEE-ehhhh------------
Q psy14504 46 VIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL-SKKILLL-DIALL------------ 111 (951)
Q Consensus 46 lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~-~~~~~~~-~~~~l------------ 111 (951)
++||+.+++.+...+.......++|+||.|+|||++++.+.+.+...+...... ....... .....
T Consensus 1 F~gR~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~l~~ 80 (234)
T PF01637_consen 1 FFGREKELEKLKELLESGPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETSLADELSE 80 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHHHHCHCHH
T ss_pred CCCHHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHHHHHHHHH
Confidence 579999999999999887788999999999999999999999873321110000 0000000 00000
Q ss_pred -h----cCc-------cccccHHHHHHHHHHHHHhcCCCeEEEEecccccc-cCCCCC-CchhHHhhhhhhccCCcEEEE
Q psy14504 112 -L----AGT-------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMI-GTGKVE-GSIDAGNMLKPELSRGELHCI 177 (951)
Q Consensus 112 -~----~~~-------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~-~~~~~~-~~~~~~~~L~~~le~~~i~vI 177 (951)
. ... .........+..++..+.....+.||+|||++.+. ...... -.....+.+........+.+|
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v 160 (234)
T PF01637_consen 81 ALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIV 160 (234)
T ss_dssp HHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEE
T ss_pred HHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEE
Confidence 0 000 01123345677778877766556999999999998 211000 011222333333345667666
Q ss_pred EeecchHHH-HhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 178 GATTLNEYR-QYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 178 ~at~~~~~~-~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
.+++...+. .+......+..|+..+.+++.+.++..++++...... .++.++++.+..+..+++|..
T Consensus 161 ~~~S~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~---~~~~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 161 ITGSSDSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL---IKLPFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp EEESSHHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred EECCchHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh---hcccCCHHHHHHHHHHhCCCH
Confidence 666655432 2344456677788889999999999999998876643 122458999999999988753
No 421
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.00 E-value=2.4e-09 Score=113.25 Aligned_cols=142 Identities=15% Similarity=0.214 Sum_probs=94.3
Q ss_pred HHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh--chhcccCCCC-CC
Q psy14504 449 ISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH--SISRLIGAPP-GY 525 (951)
Q Consensus 449 ~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~--~~~~l~g~~~-~~ 525 (951)
.+.+...+...+. .+.+||+||+|+||+.+|.++|+.+++...+- .|..+.... ++..+..... ..
T Consensus 6 ~~~L~~~i~~~rl--------~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~---~c~~~~~~~HPD~~~i~p~~~~~~ 74 (290)
T PRK05917 6 WEALIQRVRDQKV--------PSAIILHGQDLSNLSARAYELASLILKETSPE---AAYKISQKIHPDIHEFSPQGKGRL 74 (290)
T ss_pred HHHHHHHHHcCCc--------CeeEeeECCCCCcHHHHHHHHHHHHhCCCCcc---HHHHHhcCCCCCEEEEecCCCCCc
Confidence 4556666654432 24799999999999999999999997543221 111111100 0000100000 12
Q ss_pred ccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhc
Q psy14504 526 IGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 601 (951)
Q Consensus 526 ~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~ 601 (951)
++-++.+.+...+. .++..|++||++|+++.+++|+||+.||+ +..+++||+.|+...
T Consensus 75 I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEE-----------Pp~~~~fiL~~~~~~------- 136 (290)
T PRK05917 75 HSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLED-----------PPQHGVIILTSAKPQ------- 136 (290)
T ss_pred CcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhc-----------CCCCeEEEEEeCChh-------
Confidence 33334444544443 24568999999999999999999999998 778899999888633
Q ss_pred cccHHHHHHHHHHHHHhccChhHhhccCcEEEecCC
Q psy14504 602 KGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYL 637 (951)
Q Consensus 602 ~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l 637 (951)
.+.|.++||| ..+.|+|+
T Consensus 137 -----------------~ll~TI~SRc-q~~~~~~~ 154 (290)
T PRK05917 137 -----------------RLPPTIRSRS-LSIHIPME 154 (290)
T ss_pred -----------------hCcHHHHhcc-eEEEccch
Confidence 4578999999 69999987
No 422
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.98 E-value=3.8e-08 Score=106.33 Aligned_cols=186 Identities=19% Similarity=0.179 Sum_probs=108.7
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE--Eehhhhh------cCccccccH----HHHHHHHHH
Q psy14504 63 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL--LDIALLL------AGTKYRGEF----EDRLKKILK 130 (951)
Q Consensus 63 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~--~~~~~l~------~~~~~~g~~----~~~l~~~~~ 130 (951)
...+.++|+||+|+||||+++.+++.+...... .+.+.. .+...+. .|....+.. ...+...+.
T Consensus 41 ~~~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~----~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~ 116 (269)
T TIGR03015 41 QREGFILITGEVGAGKTTLIRNLLKRLDQERVV----AAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLI 116 (269)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHHHhcCCCCeE----EeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHH
Confidence 334568899999999999999999887422100 000000 0111100 111111211 122333333
Q ss_pred HHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc----CC-cEEEEEeecchHHHHhhhc--CHHHhhcceE-E
Q psy14504 131 EISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS----RG-ELHCIGATTLNEYRQYIEK--DAAFERRFQK-I 202 (951)
Q Consensus 131 ~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le----~~-~i~vI~at~~~~~~~~~~~--~~~l~~Rf~~-i 202 (951)
.....+.+.+|+|||++.+.+ ...+.|+.+.+ .. .+.+|.++.+ ++...+.. ...+.+|+.. +
T Consensus 117 ~~~~~~~~~vliiDe~~~l~~--------~~~~~l~~l~~~~~~~~~~~~vvl~g~~-~~~~~l~~~~~~~l~~r~~~~~ 187 (269)
T TIGR03015 117 EQFAAGKRALLVVDEAQNLTP--------ELLEELRMLSNFQTDNAKLLQIFLVGQP-EFRETLQSPQLQQLRQRIIASC 187 (269)
T ss_pred HHHhCCCCeEEEEECcccCCH--------HHHHHHHHHhCcccCCCCeEEEEEcCCH-HHHHHHcCchhHHHHhheeeee
Confidence 333345678999999999843 22333333222 22 3444555544 33333321 2357778764 9
Q ss_pred EeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHh
Q psy14504 203 LVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 203 ~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
.+++++.++...++...+..........+++++++.+.+.|.++. ..+..+++.+....
T Consensus 188 ~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p------~~i~~l~~~~~~~a 246 (269)
T TIGR03015 188 HLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIP------RLINILCDRLLLSA 246 (269)
T ss_pred eCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcc------cHHHHHHHHHHHHH
Confidence 999999999999998887765433445789999999999987754 77666666665443
No 423
>KOG0741|consensus
Probab=98.98 E-value=4.7e-10 Score=122.02 Aligned_cols=138 Identities=23% Similarity=0.386 Sum_probs=98.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCcccccc--chhHHHHH--------hC
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVR--------RK 541 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~--------~~ 541 (951)
.+|||||||||||.+||.|...++... -..++++++.++ |+|+++. +.++.-++ .+
T Consensus 258 GiLLyGPPGTGKTLiARqIGkMLNAre--PKIVNGPeIL~K------------YVGeSE~NvR~LFaDAEeE~r~~g~~S 323 (744)
T KOG0741|consen 258 GILLYGPPGTGKTLIARQIGKMLNARE--PKIVNGPEILNK------------YVGESEENVRKLFADAEEEQRRLGANS 323 (744)
T ss_pred eEEEECCCCCChhHHHHHHHHHhcCCC--CcccCcHHHHHH------------hhcccHHHHHHHHHhHHHHHHhhCccC
Confidence 589999999999999999999997543 345688888776 8998876 34443331 22
Q ss_pred CCeEEEEcccccc-------------CHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHH
Q psy14504 542 PYSLILLDEIEKA-------------NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEII 608 (951)
Q Consensus 542 ~~~vl~iDEid~~-------------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~ 608 (951)
.--||+|||||.+ +..+.|+||.-||.- -...|.++|.-||.... +.
T Consensus 324 gLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGV---------eqLNNILVIGMTNR~Dl-ID---------- 383 (744)
T KOG0741|consen 324 GLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGV---------EQLNNILVIGMTNRKDL-ID---------- 383 (744)
T ss_pred CceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccH---------HhhhcEEEEeccCchhh-HH----------
Confidence 3469999999853 568999999999851 13578888888996321 10
Q ss_pred HHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHH
Q psy14504 609 KLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILK 654 (951)
Q Consensus 609 ~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~ 654 (951)
+..++| +|+...+...-+++.-..+|++-.-++++
T Consensus 384 --------EALLRP---GRlEVqmEIsLPDE~gRlQIl~IHT~rMr 418 (744)
T KOG0741|consen 384 --------EALLRP---GRLEVQMEISLPDEKGRLQILKIHTKRMR 418 (744)
T ss_pred --------HHhcCC---CceEEEEEEeCCCccCceEEEEhhhhhhh
Confidence 112445 78877888888888877777665555543
No 424
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=98.97 E-value=1.5e-08 Score=119.86 Aligned_cols=119 Identities=14% Similarity=0.175 Sum_probs=79.9
Q ss_pred CeEEEEecccccccCCCCCCchhHHhhhhhhccCC-----------------------cEEEEEeecchHHHHhhhcCHH
Q psy14504 138 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-----------------------ELHCIGATTLNEYRQYIEKDAA 194 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-----------------------~i~vI~at~~~~~~~~~~~~~~ 194 (951)
+.+|||||++.|.+ ..+..|+.+|+.+ ++++|+++|+.. ...++|.
T Consensus 218 gGtL~Ldei~~L~~--------~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~---l~~l~~~ 286 (608)
T TIGR00764 218 KGVLYIDEIKTMPL--------EVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDD---LEGMHPA 286 (608)
T ss_pred CCEEEEEChHhCCH--------HHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHH---HhhcCHH
Confidence 35899999998843 5666777776422 467899999875 3478999
Q ss_pred Hhhcce---E-EEeeC--C-CHHHHHHHHHHHHHhhhhh-cCCCCChHHHHHHHHHhhhhcccCCC----chhHHHHHHH
Q psy14504 195 FERRFQ---K-ILVEE--P-DIEETISILRGLQKKYEVH-HGVEITDPAIVAASELSYRYISDRFM----PDKAIDLIDE 262 (951)
Q Consensus 195 l~~Rf~---~-i~~~~--p-~~~er~~il~~~~~~~~~~-~~~~i~~~~l~~~~~~s~~~~~~~~~----p~~a~~ll~~ 262 (951)
|++||. . +.|+. | +.+.+..+++.+.+..+.. .-..++++++..+.+.+.|....+.. .+...+++..
T Consensus 287 l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~ag~r~~lsl~~R~L~~llR~ 366 (608)
T TIGR00764 287 LRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRAGRKDHLTLRLRELGGLVRA 366 (608)
T ss_pred HHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHHhcccccCCCHHHHHHHHHH
Confidence 999998 3 44432 3 5666767766665554433 22368999999988877665443333 5667777777
Q ss_pred HHHHh
Q psy14504 263 AAAKI 267 (951)
Q Consensus 263 a~~~~ 267 (951)
|...+
T Consensus 367 A~~iA 371 (608)
T TIGR00764 367 AGDIA 371 (608)
T ss_pred HHHHH
Confidence 75443
No 425
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.97 E-value=1.2e-08 Score=110.40 Aligned_cols=165 Identities=22% Similarity=0.246 Sum_probs=105.3
Q ss_pred CCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE--eh-----------
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL--DI----------- 108 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~--~~----------- 108 (951)
-|.-++|++.....|..-.-.+...++|+.|+.||||||++|+|+..|..... ..+|++-.- +.
T Consensus 15 pf~aivGqd~lk~aL~l~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~---V~gc~f~cdP~~P~~~c~~c~~k~ 91 (423)
T COG1239 15 PFTAIVGQDPLKLALGLNAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEV---VIGCPFNCDPDDPEEMCDECRAKG 91 (423)
T ss_pred chhhhcCchHHHHHHhhhhcccccceeEEecCCCccHHHHHHHHHHhCCccce---ecCCCCCCCCCChhhhhHHHHhhc
Confidence 45678899988777766555677889999999999999999999998744210 011111000 00
Q ss_pred ---hhhhcCc-------cccccHHHH------HHHHHHH----H----HhcCCCeEEEEecccccccCCCCCCchhHHhh
Q psy14504 109 ---ALLLAGT-------KYRGEFEDR------LKKILKE----I----SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNM 164 (951)
Q Consensus 109 ---~~l~~~~-------~~~g~~~~~------l~~~~~~----a----~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~ 164 (951)
..+.... --.|.++.+ +...++. . .......||+|||+..|. ..+++.
T Consensus 92 ~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~--------d~lvd~ 163 (423)
T COG1239 92 DELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLD--------DHLVDA 163 (423)
T ss_pred cccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecccccc--------HHHHHH
Confidence 0000000 001222221 1122211 0 011224599999999883 467888
Q ss_pred hhhhccCC---------------cEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCC-CHHHHHHHHHHHHH
Q psy14504 165 LKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEP-DIEETISILRGLQK 221 (951)
Q Consensus 165 L~~~le~~---------------~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p-~~~er~~il~~~~~ 221 (951)
|+..++.| ++++|+|+|+.+ -.+-|.|+.||.. |.+..| +.++|..|.++-..
T Consensus 164 LLd~aaeG~n~vereGisi~hpa~fvligTmNPEe----GeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 164 LLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEE----GELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred HHHHHHhCCceeeeCceeeccCccEEEEeecCccc----cccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 88888653 578999999975 3788999999996 888887 77888888865443
No 426
>KOG1969|consensus
Probab=98.97 E-value=8.5e-09 Score=116.91 Aligned_cols=168 Identities=19% Similarity=0.347 Sum_probs=113.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHH-------HhCCCe
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV-------RRKPYS 544 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~-------~~~~~~ 544 (951)
.+||+||||-||||||..+|+.. |..++-+|.++=...+.+.. .+..++ ....+.
T Consensus 328 ilLL~GppGlGKTTLAHViAkqa---GYsVvEINASDeRt~~~v~~---------------kI~~avq~~s~l~adsrP~ 389 (877)
T KOG1969|consen 328 ILLLCGPPGLGKTTLAHVIAKQA---GYSVVEINASDERTAPMVKE---------------KIENAVQNHSVLDADSRPV 389 (877)
T ss_pred eEEeecCCCCChhHHHHHHHHhc---CceEEEecccccccHHHHHH---------------HHHHHHhhccccccCCCcc
Confidence 57899999999999999999998 88999999987554333221 122221 124467
Q ss_pred EEEEccccccCHHHHHHHHHHhhc--ceeecCCC---------eEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHH
Q psy14504 545 LILLDEIEKANSDVFNILLQILDD--GRLTDNRG---------RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVM 613 (951)
Q Consensus 545 vl~iDEid~~~~~~~~~Ll~~le~--g~~~~~~g---------~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~ 613 (951)
+|++||||..++.+.+.|+.++.. ...+...+ +.-...+. ||+.+|.-
T Consensus 390 CLViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RP-IICICNdL-------------------- 448 (877)
T KOG1969|consen 390 CLVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRP-IICICNDL-------------------- 448 (877)
T ss_pred eEEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCC-EEEEecCc--------------------
Confidence 899999999999999999999982 22221111 01112333 45556642
Q ss_pred HHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 614 NEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 614 ~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
|-|.|. .-+-.++.|.|++...+.+ ++...+.+++ +..+..++..|++ +...||..|
T Consensus 449 ------YaPaLR~Lr~~A~ii~f~~p~~s~Lv~-------RL~~IC~rE~--mr~d~~aL~~L~e------l~~~DIRsC 507 (877)
T KOG1969|consen 449 ------YAPALRPLRPFAEIIAFVPPSQSRLVE-------RLNEICHREN--MRADSKALNALCE------LTQNDIRSC 507 (877)
T ss_pred ------cchhhhhcccceEEEEecCCChhHHHH-------HHHHHHhhhc--CCCCHHHHHHHHH------HhcchHHHH
Confidence 223222 1233599999999988773 3555566667 8888999999998 446789999
Q ss_pred hHHHHHHH
Q psy14504 692 KKSLSILL 699 (951)
Q Consensus 692 ~~~l~~~l 699 (951)
...|+-+-
T Consensus 508 INtLQfLa 515 (877)
T KOG1969|consen 508 INTLQFLA 515 (877)
T ss_pred HHHHHHHH
Confidence 77776554
No 427
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.96 E-value=1.6e-09 Score=106.67 Aligned_cols=120 Identities=20% Similarity=0.329 Sum_probs=78.5
Q ss_pred ccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC-------cc
Q psy14504 46 VIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG-------TK 116 (951)
Q Consensus 46 lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~-------~~ 116 (951)
+||.+..++++++.+.+ ..+.+|||+|++||||+.+|+++.+.... .+.+++.++|+.+... +.
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r-------~~~pfi~vnc~~~~~~~~e~~LFG~ 73 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSDLPVLITGETGTGKELLARAIHNNSPR-------KNGPFISVNCAALPEELLESELFGH 73 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTSTS-EEEECSTTSSHHHHHHHHHHCSTT-------TTS-EEEEETTTS-HHHHHHHHHEB
T ss_pred CEeCCHHHHHHHHHHHHHhCCCCCEEEEcCCCCcHHHHHHHHHHhhhc-------ccCCeEEEehhhhhcchhhhhhhcc
Confidence 68999999988887664 66689999999999999999999985422 2578999999765310 00
Q ss_pred ccccH---HHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEEEEee
Q psy14504 117 YRGEF---EDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGAT 180 (951)
Q Consensus 117 ~~g~~---~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~vI~at 180 (951)
..|.+ ...-..+++.|. ..+||||||+.|.+ +.+..|..+|+.+ ++++|++|
T Consensus 74 ~~~~~~~~~~~~~G~l~~A~----~GtL~Ld~I~~L~~--------~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st 141 (168)
T PF00158_consen 74 EKGAFTGARSDKKGLLEQAN----GGTLFLDEIEDLPP--------ELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIAST 141 (168)
T ss_dssp CSSSSTTTSSEBEHHHHHTT----TSEEEEETGGGS-H--------HHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEE
T ss_pred ccccccccccccCCceeecc----ceEEeecchhhhHH--------HHHHHHHHHHhhchhccccccccccccceEEeec
Confidence 00100 000124455542 44899999999944 7788888888532 68899999
Q ss_pred cchH
Q psy14504 181 TLNE 184 (951)
Q Consensus 181 ~~~~ 184 (951)
+.+-
T Consensus 142 ~~~l 145 (168)
T PF00158_consen 142 SKDL 145 (168)
T ss_dssp SS-H
T ss_pred CcCH
Confidence 9753
No 428
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.96 E-value=2.1e-08 Score=117.25 Aligned_cols=201 Identities=15% Similarity=0.187 Sum_probs=121.2
Q ss_pred CCccccHHHHHHHHHHHHcCC------------CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE----e
Q psy14504 44 DPVIGRDDEIRRAIQVLQRRS------------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL----D 107 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~~~~------------~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~----~ 107 (951)
-.++|++.+...++-.+.... ..|+||+|+||||||++|+++++..... .+.. +
T Consensus 203 p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~----------~~~~~~~~~ 272 (509)
T smart00350 203 PSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRA----------VYTTGKGSS 272 (509)
T ss_pred ccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcc----------eEcCCCCCC
Confidence 368899988666665554432 1289999999999999999999875221 1111 1
Q ss_pred hhhhhcC---ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC------------
Q psy14504 108 IALLLAG---TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 172 (951)
Q Consensus 108 ~~~l~~~---~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~------------ 172 (951)
...+... ....|++.-.- ..+. .....+|+|||++.+.+ ..+..|...|+.+
T Consensus 273 ~~~l~~~~~~~~~~g~~~~~~-G~l~----~A~~Gil~iDEi~~l~~--------~~q~~L~e~me~~~i~i~k~G~~~~ 339 (509)
T smart00350 273 AVGLTAAVTRDPETREFTLEG-GALV----LADNGVCCIDEFDKMDD--------SDRTAIHEAMEQQTISIAKAGITTT 339 (509)
T ss_pred cCCccccceEccCcceEEecC-ccEE----ecCCCEEEEechhhCCH--------HHHHHHHHHHhcCEEEEEeCCEEEE
Confidence 1111100 00111111000 0111 12245899999999843 4566677777543
Q ss_pred ---cEEEEEeecchHH--------HHhhhcCHHHhhcceE--EEeeCCCHHHHHHHHHHHHHhhhhh-------cCCCCC
Q psy14504 173 ---ELHCIGATTLNEY--------RQYIEKDAAFERRFQK--ILVEEPDIEETISILRGLQKKYEVH-------HGVEIT 232 (951)
Q Consensus 173 ---~i~vI~at~~~~~--------~~~~~~~~~l~~Rf~~--i~~~~p~~~er~~il~~~~~~~~~~-------~~~~i~ 232 (951)
++.+|+|+|+.+- .+-+.+++++++||+. +....|+.+....|+++++...... ....++
T Consensus 340 l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~ 419 (509)
T smart00350 340 LNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPIS 419 (509)
T ss_pred ecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCC
Confidence 4678999997641 1123799999999985 6678899999999998876542211 112356
Q ss_pred hHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhH
Q psy14504 233 DPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 233 ~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 268 (951)
.+.+......+..++.. .++..+...+.......+
T Consensus 420 ~~~l~~yi~~ar~~~~P-~ls~~~~~~i~~~y~~~R 454 (509)
T smart00350 420 QEFLRKYIAYAREKIKP-KLSEEAAEKLVKAYVDLR 454 (509)
T ss_pred HHHHHHHHHHHHhcCCC-CCCHHHHHHHHHHHHHhc
Confidence 66676666666653311 256667776666555444
No 429
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.95 E-value=7.2e-11 Score=107.21 Aligned_cols=108 Identities=25% Similarity=0.316 Sum_probs=59.5
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh------hhhcCcccc---ccHHHHHHHHHHHHHhcCC
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA------LLLAGTKYR---GEFEDRLKKILKEISNNQK 137 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~------~l~~~~~~~---g~~~~~l~~~~~~a~~~~~ 137 (951)
|+||.|+||+|||++|+++|+.+ +..+..+.+. ++....-+. ++++-.-..+|
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~----------~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif-------- 62 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSL----------GLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIF-------- 62 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHT----------T--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT---------
T ss_pred CEeeECCCccHHHHHHHHHHHHc----------CCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhh--------
Confidence 68999999999999999999998 6666555442 222110000 11110001111
Q ss_pred CeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEEEEeecchHHHHhhhcCHHHhhcce
Q psy14504 138 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYRQYIEKDAAFERRFQ 200 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~vI~at~~~~~~~~~~~~~~l~~Rf~ 200 (951)
..|+++||+.+..+ ..++.|++.|+.+ .+.||||.|+.++...+.++.++++||.
T Consensus 63 ~~ill~DEiNrapp--------ktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 63 TNILLADEINRAPP--------KTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp SSEEEEETGGGS-H--------HHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred hceeeecccccCCH--------HHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 13999999998754 5677788888533 3678999999998899999999999994
No 430
>KOG0990|consensus
Probab=98.95 E-value=3.3e-09 Score=109.61 Aligned_cols=193 Identities=18% Similarity=0.183 Sum_probs=126.5
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
..+++|++.+..+.+.... ++-| |+|||||||||||+...+.|..+++.. +..+.. -++ ..+.
T Consensus 41 ~dv~~~~ei~st~~~~~~~-------~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~-~~~~m~-lel----naSd-- 103 (360)
T KOG0990|consen 41 GIVIKQEPIWSTENRYSGM-------PGLP--HLLFYGPPGTGKTSTILANARDFYSPH-PTTSML-LEL----NASD-- 103 (360)
T ss_pred hhHhcCCchhhHHHHhccC-------CCCC--cccccCCCCCCCCCchhhhhhhhcCCC-CchhHH-HHh----hccC--
Confidence 4567888877777776321 2223 799999999999999999999997631 111000 000 0000
Q ss_pred CCCCCCcccccc-chhHHHHH-------hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecC
Q psy14504 520 GAPPGYIGYEEG-GYLTEIVR-------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 591 (951)
Q Consensus 520 g~~~~~~g~~~~-~~l~~~~~-------~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 591 (951)
+. -++-... -..+...+ .+.+..+++||+|.+...+||+|.++++. ...++.|++-+|
T Consensus 104 --~r-gid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek-----------~t~n~rF~ii~n 169 (360)
T KOG0990|consen 104 --DR-GIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEK-----------YTANTRFATISN 169 (360)
T ss_pred --cc-CCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHH-----------hccceEEEEecc
Confidence 00 0110000 11122222 24678999999999999999999998886 456777887788
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 671 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 671 (951)
.... ..|.+.+|| ..+.|.|++..+....+...... .. +..+++..
T Consensus 170 ~~~k------------------------i~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~-------e~--~~~~~~~~ 215 (360)
T KOG0990|consen 170 PPQK------------------------IHPAQQSRC-TRFRFAPLTMAQQTERQSHIRES-------EQ--KETNPEGY 215 (360)
T ss_pred Chhh------------------------cCchhhccc-ccCCCCCCChhhhhhHHHHHHhc-------ch--hhcCHHHH
Confidence 6443 468899999 58999999999888885554432 11 45566666
Q ss_pred HHHHHhcccccccccccccchHHHHHHHHhhc
Q psy14504 672 KKISNIGFDLIYGARDVHGCKKSLSILLKKIH 703 (951)
Q Consensus 672 ~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~ 703 (951)
..++. ...||+|..++-|+....+++
T Consensus 216 ~a~~r------~s~gDmr~a~n~Lqs~~~~~~ 241 (360)
T KOG0990|consen 216 SALGR------LSVGDMRVALNYLQSILKKVM 241 (360)
T ss_pred HHHHH------HhHHHHHHHHHHHHHHHHHhC
Confidence 66655 337889988888887776555
No 431
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.93 E-value=1.5e-09 Score=107.25 Aligned_cols=110 Identities=20% Similarity=0.328 Sum_probs=71.0
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHH-cCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCe
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDI 139 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~ 139 (951)
+..++||+||+|||||.+|+++|+.+. .. ..+++.+|++.+..+.. ... .+..++..+. ......
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~-------~~~~~~~d~s~~~~~~~-~~~---~~~~l~~~~~~~v~~~~~g 70 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGS-------ERPLIRIDMSEYSEGDD-VES---SVSKLLGSPPGYVGAEEGG 70 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SS-------CCEEEEEEGGGHCSHHH-CSC---HCHHHHHHTTCHHHHHHHT
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCC-------ccchHHHhhhcccccch-HHh---hhhhhhhcccceeeccchh
Confidence 456899999999999999999999994 21 45899999988764110 011 1122221110 011123
Q ss_pred EEEEecccccccCCCCC---CchhHHhhhhhhccCC-------------cEEEEEeecchH
Q psy14504 140 IIFIDELHTMIGTGKVE---GSIDAGNMLKPELSRG-------------ELHCIGATTLNE 184 (951)
Q Consensus 140 iL~iDEid~l~~~~~~~---~~~~~~~~L~~~le~~-------------~i~vI~at~~~~ 184 (951)
||||||||...+..... ....+++.|+++++.+ ++++|+|+|-..
T Consensus 71 VVllDEidKa~~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 71 VVLLDEIDKAHPSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp EEEEETGGGCSHTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred hhhhHHHhhccccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 99999999998742111 1246788899988643 577899998654
No 432
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.93 E-value=5.8e-09 Score=114.67 Aligned_cols=175 Identities=17% Similarity=0.250 Sum_probs=114.1
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHHhccCCC--ceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEE
Q psy14504 469 PYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLI 546 (951)
Q Consensus 469 p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl 546 (951)
+..+++|+||+|.|||+|++|+++.....+. .++++....|....-..-. . .....+.+.. .-.+|
T Consensus 112 ~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~~~v~a~~-~--------~~~~~Fk~~y---~~dll 179 (408)
T COG0593 112 AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTNDFVKALR-D--------NEMEKFKEKY---SLDLL 179 (408)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHHHHHHHHH-h--------hhHHHHHHhh---ccCee
Confidence 3446999999999999999999998854443 4566655555433111100 0 0001111222 34699
Q ss_pred EEccccccCH--HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhH
Q psy14504 547 LLDEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF 624 (951)
Q Consensus 547 ~iDEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l 624 (951)
+||+|+.+.. ..+..|+..+.. +...+..+|+|+...+..+. .+.|.|
T Consensus 180 lIDDiq~l~gk~~~qeefFh~FN~----------l~~~~kqIvltsdr~P~~l~--------------------~~~~rL 229 (408)
T COG0593 180 LIDDIQFLAGKERTQEEFFHTFNA----------LLENGKQIVLTSDRPPKELN--------------------GLEDRL 229 (408)
T ss_pred eechHhHhcCChhHHHHHHHHHHH----------HHhcCCEEEEEcCCCchhhc--------------------cccHHH
Confidence 9999998763 456666666653 11112258888888777653 356888
Q ss_pred hhccCc--EEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHH
Q psy14504 625 INRIDD--IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLK 700 (951)
Q Consensus 625 ~~R~~~--~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~ 700 (951)
.+||.. ++...|++.+....|+.. .+...+ +.++++++.+++.... -.+|++.|. +.++..
T Consensus 230 ~SR~~~Gl~~~I~~Pd~e~r~aiL~k-------ka~~~~--~~i~~ev~~~la~~~~---~nvReLega---L~~l~~ 292 (408)
T COG0593 230 RSRLEWGLVVEIEPPDDETRLAILRK-------KAEDRG--IEIPDEVLEFLAKRLD---RNVRELEGA---LNRLDA 292 (408)
T ss_pred HHHHhceeEEeeCCCCHHHHHHHHHH-------HHHhcC--CCCCHHHHHHHHHHhh---ccHHHHHHH---HHHHHH
Confidence 899954 999999999999999555 344445 8899999999998532 336777776 444443
No 433
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=6.9e-09 Score=113.34 Aligned_cols=140 Identities=17% Similarity=0.200 Sum_probs=90.9
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCc---eEEeccc---cccch-hchhcccCCC-----C----CCccccccchh
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEES---IIRIDMS---EFIEK-HSISRLIGAP-----P----GYIGYEEGGYL 534 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~---~~~~~~~---~~~~~-~~~~~l~g~~-----~----~~~g~~~~~~l 534 (951)
+.+||+||+|+|||++|+.+|+.+...... ..+-.|. .+... +.--..+... . ..++-+..+.+
T Consensus 22 hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~iR~l 101 (325)
T PRK08699 22 NAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAVREI 101 (325)
T ss_pred eEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHHHHH
Confidence 479999999999999999999998542210 0111111 11000 0000011110 0 11333344555
Q ss_pred HHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHH
Q psy14504 535 TEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKL 610 (951)
Q Consensus 535 ~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~ 610 (951)
.+.+.. +...|+++|+++.+++..++.|++.|++ ...++.||++|+...
T Consensus 102 ~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEe-----------p~~~~~~Ilvth~~~---------------- 154 (325)
T PRK08699 102 IDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEE-----------PPPQVVFLLVSHAAD---------------- 154 (325)
T ss_pred HHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHh-----------CcCCCEEEEEeCChH----------------
Confidence 555543 4578999999999999999999999997 234566777777533
Q ss_pred HHHHHHHhccChhHhhccCcEEEecCCChhhHHHHH
Q psy14504 611 AVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 646 (951)
Q Consensus 611 ~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~ 646 (951)
.+.|.+.+|| ..+.|+|++.+++.+.+
T Consensus 155 --------~ll~ti~SRc-~~~~~~~~~~~~~~~~L 181 (325)
T PRK08699 155 --------KVLPTIKSRC-RKMVLPAPSHEEALAYL 181 (325)
T ss_pred --------hChHHHHHHh-hhhcCCCCCHHHHHHHH
Confidence 2457889999 79999999999988774
No 434
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.91 E-value=1.1e-08 Score=108.69 Aligned_cols=156 Identities=14% Similarity=0.211 Sum_probs=102.6
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCc--eEEecccc---ccch-hchhc
Q psy14504 444 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEES--IIRIDMSE---FIEK-HSISR 517 (951)
Q Consensus 444 Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~--~~~~~~~~---~~~~-~~~~~ 517 (951)
+|..+++.+..++...+. .+.+||+|| +||+++|+.+|+.+++.+.. -.+..|.. +... |.--.
T Consensus 6 ~q~~~~~~L~~~~~~~rl--------~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~ 75 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRL--------NHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVT 75 (290)
T ss_pred HHHHHHHHHHHHHHcCCc--------ceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCee
Confidence 577778888888876553 247999996 68999999999998654311 11111111 1111 00001
Q ss_pred ccCCCCCCccccccchhHHHHH----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCC
Q psy14504 518 LIGAPPGYIGYEEGGYLTEIVR----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLG 593 (951)
Q Consensus 518 l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~ 593 (951)
.+......++.++.+.+...+. .++..|++||++|+++.+..|+||+.||+ +..+++||++|+..
T Consensus 76 ~i~p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEE-----------Pp~~t~~iL~t~~~ 144 (290)
T PRK07276 76 VIEPQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEE-----------PQSEIYIFLLTNDE 144 (290)
T ss_pred eecCCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEECCh
Confidence 1111111233333344444443 34568999999999999999999999998 77889999988864
Q ss_pred chhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHH
Q psy14504 594 SDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 646 (951)
Q Consensus 594 ~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~ 646 (951)
. .+.|.++||| .++.|++ +.+++.+++
T Consensus 145 ~------------------------~lLpTI~SRc-q~i~f~~-~~~~~~~~L 171 (290)
T PRK07276 145 N------------------------KVLPTIKSRT-QIFHFPK-NEAYLIQLL 171 (290)
T ss_pred h------------------------hCchHHHHcc-eeeeCCC-cHHHHHHHH
Confidence 3 3568899999 7999977 666666653
No 435
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.90 E-value=4.2e-09 Score=95.60 Aligned_cols=67 Identities=24% Similarity=0.439 Sum_probs=58.2
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC
Q psy14504 431 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 499 (951)
Q Consensus 431 l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~ 499 (951)
+..|+..|.+.+.||.-|.+.+..+++..-.. ..|++|+ .+.|+||||||||.+++.||+.+|..+.
T Consensus 16 ~~~L~~~L~~~l~GQhla~~~v~~ai~~~l~~-~~p~KpL-VlSfHG~tGtGKn~v~~liA~~ly~~G~ 82 (127)
T PF06309_consen 16 ITGLEKDLQRNLFGQHLAVEVVVNAIKGHLAN-PNPRKPL-VLSFHGWTGTGKNFVSRLIAEHLYKSGM 82 (127)
T ss_pred HHHHHHHHHHHccCcHHHHHHHHHHHHHHHcC-CCCCCCE-EEEeecCCCCcHHHHHHHHHHHHHhccc
Confidence 45788899999999999999999999876544 5788887 7789999999999999999999987653
No 436
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.4e-08 Score=102.48 Aligned_cols=106 Identities=25% Similarity=0.378 Sum_probs=74.8
Q ss_pred CeEEEEecccccccCCCCCC---c-hhHHhhhhhhccC------------CcEEEEEeecchHHHHhhhcCHHHhhcceE
Q psy14504 138 DIIIFIDELHTMIGTGKVEG---S-IDAGNMLKPELSR------------GELHCIGATTLNEYRQYIEKDAAFERRFQK 201 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~---~-~~~~~~L~~~le~------------~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~ 201 (951)
..|+||||||.+...++.++ | ..++.-|+++++. ..+.+|+++-.. +.+--.+-|.|.-||+.
T Consensus 251 ~GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh-~sKPSDLiPELQGRfPI 329 (444)
T COG1220 251 NGIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFH-VAKPSDLIPELQGRFPI 329 (444)
T ss_pred cCeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCcee-cCChhhcChhhcCCCce
Confidence 35999999999987664322 1 3367788998863 357788876532 11222678999999996
Q ss_pred -EEeeCCCHHHHHHHHH----HHHHhhhh---hcC--CCCChHHHHHHHHHhh
Q psy14504 202 -ILVEEPDIEETISILR----GLQKKYEV---HHG--VEITDPAIVAASELSY 244 (951)
Q Consensus 202 -i~~~~p~~~er~~il~----~~~~~~~~---~~~--~~i~~~~l~~~~~~s~ 244 (951)
+++...+.++-..||. .+.++|.. ..+ +.++++++..+++.+.
T Consensus 330 RVEL~~Lt~~Df~rILtep~~sLikQY~aLlkTE~v~l~FtddaI~~iAeiA~ 382 (444)
T COG1220 330 RVELDALTKEDFERILTEPKASLIKQYKALLKTEGVELEFTDDAIKRIAEIAY 382 (444)
T ss_pred EEEcccCCHHHHHHHHcCcchHHHHHHHHHHhhcCeeEEecHHHHHHHHHHHH
Confidence 9999999999999983 45555543 223 4578888887777653
No 437
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.89 E-value=1.2e-08 Score=117.27 Aligned_cols=155 Identities=16% Similarity=0.157 Sum_probs=94.1
Q ss_pred CCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCC------------------cCCCe
Q psy14504 41 GKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------------LLSKK 102 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~------------------~~~~~ 102 (951)
..|++++|++..++.+...+ ....+++|+|||||||||+++.++..+........ ....+
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa--~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~P 266 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA--AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRP 266 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc--cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCC
Confidence 37889999998877766554 34478999999999999999999976522110000 01112
Q ss_pred EEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC----------
Q psy14504 103 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------- 172 (951)
Q Consensus 103 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~---------- 172 (951)
+...+.+... ....|.....-...+..+ .+.+|||||++.+. ...++.|++.|+.+
T Consensus 267 f~~p~~s~s~--~~~~ggg~~~~pG~i~lA----~~GvLfLDEi~e~~--------~~~~~~L~~~LE~~~v~i~r~g~~ 332 (499)
T TIGR00368 267 FRSPHHSASK--PALVGGGPIPLPGEISLA----HNGVLFLDELPEFK--------RSVLDALREPIEDGSISISRASAK 332 (499)
T ss_pred ccccccccch--hhhhCCccccchhhhhcc----CCCeEecCChhhCC--------HHHHHHHHHHHHcCcEEEEecCcc
Confidence 2211111100 000010000001122222 24599999999873 46777888888654
Q ss_pred -----cEEEEEeecchHHHH------------------hhhcCHHHhhcceE-EEeeCCCHHH
Q psy14504 173 -----ELHCIGATTLNEYRQ------------------YIEKDAAFERRFQK-ILVEEPDIEE 211 (951)
Q Consensus 173 -----~i~vI~at~~~~~~~------------------~~~~~~~l~~Rf~~-i~~~~p~~~e 211 (951)
.+.+|+++|+.+... ...+..+|++||+. +.+++++..+
T Consensus 333 ~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~ 395 (499)
T TIGR00368 333 IFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEK 395 (499)
T ss_pred eeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHH
Confidence 468999999743111 22588999999996 8898887654
No 438
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=98.88 E-value=5.6e-08 Score=105.26 Aligned_cols=95 Identities=18% Similarity=0.184 Sum_probs=63.4
Q ss_pred eEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEEEEeecchHHHHh--hhcCHHHhhcceEEE
Q psy14504 139 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATTLNEYRQY--IEKDAAFERRFQKIL 203 (951)
Q Consensus 139 ~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~vI~at~~~~~~~~--~~~~~~l~~Rf~~i~ 203 (951)
+|+-|+|+... ..+..+.|+..++.+ ..+||+++|+.+|..+ .+...+|++||..+.
T Consensus 238 Gi~~f~Ei~K~--------~~~~l~~LL~~~qE~~v~~~~~~~~~~~d~liia~sNe~e~~~~~~~k~~eaf~dR~~~i~ 309 (361)
T smart00763 238 GILEFVEMFKA--------DIKFLHPLLTATQEGNIKGTGGFAMIPIDGLIIAHSNESEWQRFKSNKKNEALLDRIIKVK 309 (361)
T ss_pred ceEEEeehhcC--------CHHHHHHHhhhhhcceEecCCcccccccceEEEEeCCHHHHhhhhccccchhhhhceEEEe
Confidence 45666666554 135556666666532 2468999999988755 466899999999999
Q ss_pred eeCC-CHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHH
Q psy14504 204 VEEP-DIEETISILRGLQKKYEVHHGVEITDPAIVAASEL 242 (951)
Q Consensus 204 ~~~p-~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~ 242 (951)
++.| +.++-.+|.++.+..-. ..+..+.+.+++.++..
T Consensus 310 vpY~l~~~~E~~Iy~k~~~~s~-~~~~~~aP~~le~aa~~ 348 (361)
T smart00763 310 VPYCLRVSEEAQIYEKLLRNSD-LTEAHIAPHTLEMAALF 348 (361)
T ss_pred CCCcCCHHHHHHHHHHHhccCc-CcccccCchHHHHHHHH
Confidence 9988 66777788887776421 12355666666555443
No 439
>PRK08181 transposase; Validated
Probab=98.87 E-value=7e-09 Score=109.73 Aligned_cols=108 Identities=15% Similarity=0.352 Sum_probs=75.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||||||||+||.++++.+...+..+.++.+.++......... .. ........+ ....+|+|||+
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~--------~~-~~~~~l~~l--~~~dLLIIDDl 176 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARR--------EL-QLESAIAKL--DKFDLLILDDL 176 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHh--------CC-cHHHHHHHH--hcCCEEEEecc
Confidence 69999999999999999999998777888888888777664322110 00 001122222 34469999999
Q ss_pred cccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhc
Q psy14504 552 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 601 (951)
Q Consensus 552 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~ 601 (951)
+..+ +..++.|+++++.. ..+.-+|+|||.+...+...+
T Consensus 177 g~~~~~~~~~~~Lf~lin~R-----------~~~~s~IiTSN~~~~~w~~~~ 217 (269)
T PRK08181 177 AYVTKDQAETSVLFELISAR-----------YERRSILITANQPFGEWNRVF 217 (269)
T ss_pred ccccCCHHHHHHHHHHHHHH-----------HhCCCEEEEcCCCHHHHHHhc
Confidence 8664 56678899999851 122348899999988876644
No 440
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.87 E-value=4.5e-08 Score=115.82 Aligned_cols=192 Identities=16% Similarity=0.139 Sum_probs=117.1
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccH--HHHHH--------HHHHH
Q psy14504 62 RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEF--EDRLK--------KILKE 131 (951)
Q Consensus 62 ~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--~~~l~--------~~~~~ 131 (951)
.+...+|||.|+||||||++|+++++.+.. ..+++.+..+... ....|.. ...+. .++.+
T Consensus 13 ~p~~g~vLl~G~~GtgKs~lar~l~~~~~~--------~~pfv~i~~~~t~--d~L~G~idl~~~~~~g~~~~~~G~L~~ 82 (589)
T TIGR02031 13 DPSLGGVAIRARAGTGKTALARALAEILPP--------IMPFVELPLGVTE--DRLIGGIDVEESLAGGQRVTQPGLLDE 82 (589)
T ss_pred CCCcceEEEEcCCCcHHHHHHHHHHHhCCc--------CCCeEecCcccch--hhcccchhhhhhhhcCcccCCCCCeee
Confidence 455789999999999999999999997622 1234444431111 1111211 00000 01111
Q ss_pred HHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC---------------cEEEEEeecchHHHHhhhcCHHHh
Q psy14504 132 ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAAFE 196 (951)
Q Consensus 132 a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~---------------~i~vI~at~~~~~~~~~~~~~~l~ 196 (951)
....+|||||++.+.+ ..++.|+..|+.+ .+.+|+|+|+.+.. -.+.+++.
T Consensus 83 ----A~~GvL~lDEi~rl~~--------~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~--g~L~~~Ll 148 (589)
T TIGR02031 83 ----APRGVLYVDMANLLDD--------GLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGG--GGLPDHLL 148 (589)
T ss_pred ----CCCCcEeccchhhCCH--------HHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCcccc--CCCCHHHH
Confidence 2235899999999944 6777888888654 36889988876422 26789999
Q ss_pred hcceE-EEee-CCCHHHHHHHHHHHHHhh-------------------hhhcCCCCChHHHHHHHHHhhhhcccCCCchh
Q psy14504 197 RRFQK-ILVE-EPDIEETISILRGLQKKY-------------------EVHHGVEITDPAIVAASELSYRYISDRFMPDK 255 (951)
Q Consensus 197 ~Rf~~-i~~~-~p~~~er~~il~~~~~~~-------------------~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 255 (951)
.||.. |.+. .|+.++|.+|++.....+ .....+.++++.+.+++.++-..- -.-++.
T Consensus 149 dRf~l~v~~~~~~~~~er~eil~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~g--v~s~Ra 226 (589)
T TIGR02031 149 DRLALHVSLEDVASQDLRVEIVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLG--ISGHRA 226 (589)
T ss_pred HhccCeeecCCCCCHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcC--CCCccH
Confidence 99986 5554 457788888887654211 123456788888888887764422 112455
Q ss_pred HHHHHHHHHHHhHHhh--cCCchHHH
Q psy14504 256 AIDLIDEAAAKIKIEI--DSKPEIMD 279 (951)
Q Consensus 256 a~~ll~~a~~~~~~~~--~~~~~~l~ 279 (951)
.+.++..|.+.+..+. ...++++.
T Consensus 227 ~i~~~r~ArA~Aal~gr~~V~~~Dv~ 252 (589)
T TIGR02031 227 DLFAVRAAKAHAALHGRTEVTEEDLK 252 (589)
T ss_pred HHHHHHHHHHHHHHhCCCCCCHHHHH
Confidence 6666666665555443 33344443
No 441
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.87 E-value=3.4e-08 Score=107.97 Aligned_cols=153 Identities=20% Similarity=0.212 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCC-C--------------CCcCCCeEEEEehhhh--hc
Q psy14504 51 DEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEV-P--------------NSLLSKKILLLDIALL--LA 113 (951)
Q Consensus 51 ~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~-~--------------~~~~~~~~~~~~~~~l--~~ 113 (951)
..-+++... ..+-+..+||+||+|+|||++|+.+|+.+.+... + ......+++.+....- ..
T Consensus 8 ~~w~~l~~~-~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~ 86 (325)
T PRK08699 8 EQWRQIAEH-WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPEN 86 (325)
T ss_pred HHHHHHHHh-cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccc
Confidence 344455544 2344455889999999999999999999865321 0 0112234555543210 00
Q ss_pred CccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC--cEEEEEeecchHHHHh
Q psy14504 114 GTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGATTLNEYRQY 188 (951)
Q Consensus 114 ~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at~~~~~~~~ 188 (951)
|.+...-....++.+.+.+.. .++..|++||+++.|.+ ..++.|+..++.. .+.+|.+|+.++
T Consensus 87 g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~--------~a~naLLk~LEep~~~~~~Ilvth~~~---- 154 (325)
T PRK08699 87 GRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNL--------QAANSLLKVLEEPPPQVVFLLVSHAAD---- 154 (325)
T ss_pred cccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCH--------HHHHHHHHHHHhCcCCCEEEEEeCChH----
Confidence 100000123456676666652 23456899999999943 6777888888753 566777888877
Q ss_pred hhcCHHHhhcceEEEeeCCCHHHHHHHHH
Q psy14504 189 IEKDAAFERRFQKILVEEPDIEETISILR 217 (951)
Q Consensus 189 ~~~~~~l~~Rf~~i~~~~p~~~er~~il~ 217 (951)
.+.+.+.|||..+.|++|+.++....|.
T Consensus 155 -~ll~ti~SRc~~~~~~~~~~~~~~~~L~ 182 (325)
T PRK08699 155 -KVLPTIKSRCRKMVLPAPSHEEALAYLR 182 (325)
T ss_pred -hChHHHHHHhhhhcCCCCCHHHHHHHHH
Confidence 7889999999999999999998887775
No 442
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.86 E-value=2.1e-08 Score=117.51 Aligned_cols=219 Identities=14% Similarity=0.189 Sum_probs=113.7
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEE----eccccccchhch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR----IDMSEFIEKHSI 515 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~----~~~~~~~~~~~~ 515 (951)
+.++||++.++.+..++.....+ ..+...++|+||||||||++++++|..+. ..+.. +++.........
T Consensus 84 del~~~~~ki~~l~~~l~~~~~~----~~~~~illL~GP~GsGKTTl~~~la~~l~---~~~~Ew~npv~~~~~~~~~~~ 156 (637)
T TIGR00602 84 HELAVHKKKIEEVETWLKAQVLE----NAPKRILLITGPSGCGKSTTIKILSKELG---IQVQEWSNPTLPDFQKNDHKV 156 (637)
T ss_pred HHhcCcHHHHHHHHHHHHhcccc----cCCCcEEEEECCCCCCHHHHHHHHHHHhh---hHHHHHhhhhhhccccccccc
Confidence 56889999999999888754322 12223589999999999999999998872 22111 111100000000
Q ss_pred hcccCCCCCCccccccchhHHHH---H----------hCCCeEEEEccccccC----HHHHHHHH-HHhhcceeecCCCe
Q psy14504 516 SRLIGAPPGYIGYEEGGYLTEIV---R----------RKPYSLILLDEIEKAN----SDVFNILL-QILDDGRLTDNRGR 577 (951)
Q Consensus 516 ~~l~g~~~~~~g~~~~~~l~~~~---~----------~~~~~vl~iDEid~~~----~~~~~~Ll-~~le~g~~~~~~g~ 577 (951)
...++..-... .+....+..++ . .....||||||++.+. ...++.|+ ...+.+.
T Consensus 157 ~~s~~~~~~~~-~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr~~~~e~~~------- 228 (637)
T TIGR00602 157 TLSLESCFSNF-QSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILRWKYVSIGR------- 228 (637)
T ss_pred chhhhhccccc-cchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHHHHhhcCCC-------
Confidence 00000000000 01111122211 1 1245799999995543 33444444 3333321
Q ss_pred EeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHHHHH
Q psy14504 578 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILKN 655 (951)
Q Consensus 578 ~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~~~ 655 (951)
-.+|+++|......-.. ....-.....+.+++++ |+ .+|.|+|++...+.+.+...+..-..
T Consensus 229 -----~pLI~I~TE~~~~~~~~----------~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~ 292 (637)
T TIGR00602 229 -----CPLVFIITESLEGDNNQ----------RRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAK 292 (637)
T ss_pred -----ceEEEEecCCccccccc----------cccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhh
Confidence 12333333221110000 00000001124488887 55 48999999999999888777765322
Q ss_pred HHHhcCCcccc-chHHHHHHHHhcccccccccccccchHHHHHH
Q psy14504 656 KLLKMNMDLKI-SKAALKKISNIGFDLIYGARDVHGCKKSLSIL 698 (951)
Q Consensus 656 ~~~~~~~~l~~-~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~ 698 (951)
.+ .....+ ++++++.|+. ..-||+...+..|+-+
T Consensus 293 ~~---~~~~~~p~~~~l~~I~~------~s~GDiRsAIn~LQf~ 327 (637)
T TIGR00602 293 KN---GEKIKVPKKTSVELLCQ------GCSGDIRSAINSLQFS 327 (637)
T ss_pred cc---ccccccCCHHHHHHHHH------hCCChHHHHHHHHHHH
Confidence 11 112333 5788888877 3468888886666654
No 443
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=1.2e-08 Score=105.30 Aligned_cols=136 Identities=14% Similarity=0.086 Sum_probs=90.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc---ccch-hchhcccCCCCCCccccccchhHHHHH-----hC
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE---FIEK-HSISRLIGAPPGYIGYEEGGYLTEIVR-----RK 541 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~---~~~~-~~~~~l~g~~~~~~g~~~~~~l~~~~~-----~~ 541 (951)
+.+||+||+|+||..+|.++|+.+.+....-.+-.|.. +... +.--.++......++.++.+.+...+. .+
T Consensus 8 HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~e~~ 87 (261)
T PRK05818 8 HPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSVESN 87 (261)
T ss_pred cceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCchhcC
Confidence 47999999999999999999999865432211111111 1111 000011111112344444455555442 23
Q ss_pred CCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccC
Q psy14504 542 PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFR 621 (951)
Q Consensus 542 ~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 621 (951)
...|++|+++|+++..+.|+||+.+|+ +..+++||++|+... .+.
T Consensus 88 ~~KV~II~~ae~m~~~AaNaLLK~LEE-----------Pp~~t~fiLit~~~~------------------------~lL 132 (261)
T PRK05818 88 GKKIYIIYGIEKLNKQSANSLLKLIEE-----------PPKNTYGIFTTRNEN------------------------NIL 132 (261)
T ss_pred CCEEEEeccHhhhCHHHHHHHHHhhcC-----------CCCCeEEEEEECChH------------------------hCc
Confidence 478999999999999999999999998 788999999998644 356
Q ss_pred hhHhhccCcEEEecCCChhhH
Q psy14504 622 PEFINRIDDIIVFRYLNRKNI 642 (951)
Q Consensus 622 p~l~~R~~~~i~f~~l~~~~~ 642 (951)
|.++||+ ..+.|+++.....
T Consensus 133 pTI~SRC-q~~~~~~~~~~~~ 152 (261)
T PRK05818 133 NTILSRC-VQYVVLSKEKKVP 152 (261)
T ss_pred hHhhhhe-eeeecCChhhhcc
Confidence 8899999 5788888744433
No 444
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.84 E-value=3.6e-09 Score=105.51 Aligned_cols=109 Identities=22% Similarity=0.385 Sum_probs=72.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||||||||++|.++++.+...+.++..++.+++....... +.. .....+...+... .+|+|||+
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~--------~~~-~~~~~~~~~l~~~--dlLilDDl 117 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQS--------RSD-GSYEELLKRLKRV--DLLILDDL 117 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCC--------HCC-TTHCHHHHHHHTS--SCEEEETC
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceecccccc--------ccc-cchhhhcCccccc--cEeccccc
Confidence 799999999999999999999998888899999988877653221 100 1112233444444 59999999
Q ss_pred cc--cCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhcc
Q psy14504 552 EK--ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEK 602 (951)
Q Consensus 552 d~--~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~ 602 (951)
.. ..+...+.|+++++.. +.+.-.|+|||.....+.+.++
T Consensus 118 G~~~~~~~~~~~l~~ii~~R-----------~~~~~tIiTSN~~~~~l~~~~~ 159 (178)
T PF01695_consen 118 GYEPLSEWEAELLFEIIDER-----------YERKPTIITSNLSPSELEEVLG 159 (178)
T ss_dssp TSS---HHHHHCTHHHHHHH-----------HHT-EEEEEESS-HHHHHT---
T ss_pred ceeeecccccccchhhhhHh-----------hcccCeEeeCCCchhhHhhccc
Confidence 65 4567788899999862 1223467799998887766544
No 445
>PRK06526 transposase; Provisional
Probab=98.83 E-value=7.3e-09 Score=109.13 Aligned_cols=109 Identities=20% Similarity=0.389 Sum_probs=76.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHH-HhCCCeEEEEcc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV-RRKPYSLILLDE 550 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~-~~~~~~vl~iDE 550 (951)
+++|+||||||||++|.+|+..+...+..+..+.++++......... . +.+...+ .-....+|+|||
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~-----------~-~~~~~~l~~l~~~dlLIIDD 167 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHH-----------A-GRLQAELVKLGRYPLLIVDE 167 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHh-----------c-CcHHHHHHHhccCCEEEEcc
Confidence 69999999999999999999998777777777777666554222110 0 1122222 234467999999
Q ss_pred ccccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccc
Q psy14504 551 IEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 603 (951)
Q Consensus 551 id~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~ 603 (951)
++..+ +..++.|+++++. ...+..+|+|||.+...+.+.+++
T Consensus 168 ~g~~~~~~~~~~~L~~li~~-----------r~~~~s~IitSn~~~~~w~~~~~d 211 (254)
T PRK06526 168 VGYIPFEPEAANLFFQLVSS-----------RYERASLIVTSNKPFGRWGEVFGD 211 (254)
T ss_pred cccCCCCHHHHHHHHHHHHH-----------HHhcCCEEEEcCCCHHHHHHHcCC
Confidence 99764 7788889999875 122334889999999888776553
No 446
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.83 E-value=4.3e-08 Score=116.95 Aligned_cols=162 Identities=14% Similarity=0.113 Sum_probs=101.4
Q ss_pred CccccHHHHHHHHHHHHcCC---------------------CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeE
Q psy14504 45 PVIGRDDEIRRAIQVLQRRS---------------------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKI 103 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~~~---------------------~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~ 103 (951)
.|.|++.+.+.++-.|-... ..||||+|+||||||++|+.+++...... ...+...
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~---ytsG~~~ 527 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSI---YTSGKSS 527 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccc---cCCCCCC
Confidence 68899998887766553321 12899999999999999999998542211 0112233
Q ss_pred EEEehhhhhc-CccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC----------
Q psy14504 104 LLLDIALLLA-GTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------- 172 (951)
Q Consensus 104 ~~~~~~~l~~-~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~---------- 172 (951)
..+.+..... .....|++..... .+. .....+++|||++.|.+ ..+..|.++|+++
T Consensus 528 s~vgLTa~~~~~d~~tG~~~le~G-aLv----lAdgGtL~IDEidkms~--------~~Q~aLlEaMEqqtIsI~KaGi~ 594 (915)
T PTZ00111 528 SSVGLTASIKFNESDNGRAMIQPG-AVV----LANGGVCCIDELDKCHN--------ESRLSLYEVMEQQTVTIAKAGIV 594 (915)
T ss_pred ccccccchhhhcccccCcccccCC-cEE----EcCCCeEEecchhhCCH--------HHHHHHHHHHhCCEEEEecCCcc
Confidence 3333222210 0001122110000 111 12245999999999843 5566788888643
Q ss_pred -----cEEEEEeecchHHH--------HhhhcCHHHhhcceE--EEeeCCCHHHHHHHHHHHHHh
Q psy14504 173 -----ELHCIGATTLNEYR--------QYIEKDAAFERRFQK--ILVEEPDIEETISILRGLQKK 222 (951)
Q Consensus 173 -----~i~vI~at~~~~~~--------~~~~~~~~l~~Rf~~--i~~~~p~~~er~~il~~~~~~ 222 (951)
++.||||+|+..-+ +-+.+++++++||+. +.++.|+.+.-..|.++++..
T Consensus 595 ~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~hI~~~ 659 (915)
T PTZ00111 595 ATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLSIAKD 659 (915)
T ss_pred eecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHHHHHh
Confidence 46799999985321 346788999999985 668888888888887777754
No 447
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=98.81 E-value=5.7e-08 Score=106.68 Aligned_cols=149 Identities=21% Similarity=0.287 Sum_probs=91.8
Q ss_pred CCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCC-------------CcCCCeEEE---
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPN-------------SLLSKKILL--- 105 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~-------------~~~~~~~~~--- 105 (951)
.|.|++||+...+.+.-. .....|+||+||||||||++|+.+...|..-..++ ...+++++.
T Consensus 177 D~~DV~GQ~~AKrAleiA--AAGgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~~~~~~~~~rP 254 (490)
T COG0606 177 DFKDVKGQEQAKRALEIA--AAGGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLHEGCPLKIHRP 254 (490)
T ss_pred chhhhcCcHHHHHHHHHH--HhcCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcccccccCccceeCC
Confidence 788999999998888755 34458999999999999999998776542111000 000111111
Q ss_pred -------EehhhhhcCccc--cccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCc---
Q psy14504 106 -------LDIALLLAGTKY--RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE--- 173 (951)
Q Consensus 106 -------~~~~~l~~~~~~--~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~--- 173 (951)
....+++.|+.. .|+. . .....|||+||+-.+ ...+.+.|+.-||++.
T Consensus 255 Fr~PHHsaS~~aLvGGG~~p~PGeI-----------s-LAH~GVLFLDElpef--------~~~iLe~LR~PLE~g~i~I 314 (490)
T COG0606 255 FRAPHHSASLAALVGGGGVPRPGEI-----------S-LAHNGVLFLDELPEF--------KRSILEALREPLENGKIII 314 (490)
T ss_pred ccCCCccchHHHHhCCCCCCCCCce-----------e-eecCCEEEeeccchh--------hHHHHHHHhCccccCcEEE
Confidence 112223322211 1111 0 112459999999776 2478889999998774
Q ss_pred ------------EEEEEeecchHHHH------------------hhhcCHHHhhcceE-EEeeCCCHHHH
Q psy14504 174 ------------LHCIGATTLNEYRQ------------------YIEKDAAFERRFQK-ILVEEPDIEET 212 (951)
Q Consensus 174 ------------i~vI~at~~~~~~~------------------~~~~~~~l~~Rf~~-i~~~~p~~~er 212 (951)
+++|++||+..... .-++...|++|++. ++++.++..++
T Consensus 315 sRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~ 384 (490)
T COG0606 315 SRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGEL 384 (490)
T ss_pred EEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHh
Confidence 45688888644321 12355688889985 88888775554
No 448
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.78 E-value=1.6e-07 Score=110.56 Aligned_cols=121 Identities=13% Similarity=0.174 Sum_probs=80.8
Q ss_pred CeEEEEecccccccCCCCCCchhHHhhhhhhccCC-----------------------cEEEEEeecchHHHHhhhcCHH
Q psy14504 138 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-----------------------ELHCIGATTLNEYRQYIEKDAA 194 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-----------------------~i~vI~at~~~~~~~~~~~~~~ 194 (951)
+.+|||||++.|. ...+..|+..|+.+ ++++|+++++.. ...++|.
T Consensus 227 GGtL~LDei~~L~--------~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~l---l~~~dpd 295 (637)
T PRK13765 227 KGVLFIDEINTLD--------LESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDA---LENMHPA 295 (637)
T ss_pred CcEEEEeChHhCC--------HHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCH---HHhhhHH
Confidence 4589999999883 35666777777432 457999999865 3366999
Q ss_pred Hhhcce---E-EEeeC---CCHHHHHHHHHHHHHhhhhh-cCCCCChHHHHHHHHHhhhhcccCC---C-chhHHHHHHH
Q psy14504 195 FERRFQ---K-ILVEE---PDIEETISILRGLQKKYEVH-HGVEITDPAIVAASELSYRYISDRF---M-PDKAIDLIDE 262 (951)
Q Consensus 195 l~~Rf~---~-i~~~~---p~~~er~~il~~~~~~~~~~-~~~~i~~~~l~~~~~~s~~~~~~~~---~-p~~a~~ll~~ 262 (951)
|.+||. . +.|.. -+.+.+..+++.+.+..... .-..++++++..+++.+.|....+. + .+.+..++..
T Consensus 296 L~~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G~l~~f~~eAVa~LI~~~~R~ag~r~~lsl~~~~l~~l~r~ 375 (637)
T PRK13765 296 LRSRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDGKIPHFDRDAVEEIIREAKRRAGRKGHLTLKLRDLGGLVRV 375 (637)
T ss_pred HHHHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHHhCCccccccCHHHHHHHHHH
Confidence 999996 2 55443 14555666666555554432 2346899999999988877665443 2 4566777777
Q ss_pred HHHHhHH
Q psy14504 263 AAAKIKI 269 (951)
Q Consensus 263 a~~~~~~ 269 (951)
|...++.
T Consensus 376 a~~~a~~ 382 (637)
T PRK13765 376 AGDIARS 382 (637)
T ss_pred HHHHHHh
Confidence 6655543
No 449
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.77 E-value=2.8e-08 Score=106.01 Aligned_cols=149 Identities=17% Similarity=0.299 Sum_probs=89.8
Q ss_pred HHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH-
Q psy14504 55 RAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS- 133 (951)
Q Consensus 55 ~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~- 133 (951)
.+++.+-.. ..++||+||+|||||++++.+-+.+... ..-+..++.+... +...++.+++...
T Consensus 24 ~ll~~l~~~-~~pvLl~G~~GtGKT~li~~~l~~l~~~-------~~~~~~~~~s~~T--------ts~~~q~~ie~~l~ 87 (272)
T PF12775_consen 24 YLLDLLLSN-GRPVLLVGPSGTGKTSLIQNFLSSLDSD-------KYLVITINFSAQT--------TSNQLQKIIESKLE 87 (272)
T ss_dssp HHHHHHHHC-TEEEEEESSTTSSHHHHHHHHHHCSTTC-------CEEEEEEES-TTH--------HHHHHHHCCCTTEC
T ss_pred HHHHHHHHc-CCcEEEECCCCCchhHHHHhhhccCCcc-------ccceeEeeccCCC--------CHHHHHHHHhhcEE
Confidence 344443333 5799999999999999998876654110 1112334443321 1122333332211
Q ss_pred ---------hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC--------------cEEEEEeecchHHHHhhh
Q psy14504 134 ---------NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--------------ELHCIGATTLNEYRQYIE 190 (951)
Q Consensus 134 ---------~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~--------------~i~vI~at~~~~~~~~~~ 190 (951)
..++..|+||||++.-. .+..|.+...+.|+++++.+ ++.+|+|+++.. ....
T Consensus 88 k~~~~~~gP~~~k~lv~fiDDlN~p~--~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~--Gr~~ 163 (272)
T PF12775_consen 88 KRRGRVYGPPGGKKLVLFIDDLNMPQ--PDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTG--GRNP 163 (272)
T ss_dssp ECTTEEEEEESSSEEEEEEETTT-S-----TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTT--T--S
T ss_pred cCCCCCCCCCCCcEEEEEecccCCCC--CCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCC--CCCC
Confidence 11345799999999544 34455666778888888542 577899998743 2235
Q ss_pred cCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhh
Q psy14504 191 KDAAFERRFQKILVEEPDIEETISILRGLQKKY 223 (951)
Q Consensus 191 ~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~ 223 (951)
+++.|.|.|..+.++.|+.+....|...++..+
T Consensus 164 is~R~~r~f~i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 164 ISPRFLRHFNILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp HHHHHHTTEEEEE----TCCHHHHHHHHHHHHH
T ss_pred CChHHhhheEEEEecCCChHHHHHHHHHHHhhh
Confidence 789999999999999999999999998887654
No 450
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.77 E-value=1.5e-07 Score=109.55 Aligned_cols=200 Identities=16% Similarity=0.169 Sum_probs=124.5
Q ss_pred CCCCccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC-----
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG----- 114 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~----- 114 (951)
.+..++|....++.+...+.. ....+++++|++||||+++|+++...... .+.+++.++|..+...
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~v~v~c~~~~~~~~~~~ 209 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEKIAPSDITVLLLGESGTGKEVLARALHQLSDR-------KDKRFVAINCAAIPENLLESE 209 (445)
T ss_pred cccceeecCHHHHHHHHHHHHHhCCCCCEEEECCCCcCHHHHHHHHHHhCCc-------CCCCeEEEECCCCChHHHHHH
Confidence 566799999888887776653 45578999999999999999999876422 2457888888765210
Q ss_pred --ccccccHHH---HHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEE
Q psy14504 115 --TKYRGEFED---RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHC 176 (951)
Q Consensus 115 --~~~~g~~~~---~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~v 176 (951)
+...|.+.. .....+.. ..+.+|||||++.|.. ..+..|..+++.+ .+++
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~----a~~gtl~l~~i~~l~~--------~~q~~l~~~l~~~~~~~~~~~~~~~~~~ri 277 (445)
T TIGR02915 210 LFGYEKGAFTGAVKQTLGKIEY----AHGGTLFLDEIGDLPL--------NLQAKLLRFLQERVIERLGGREEIPVDVRI 277 (445)
T ss_pred hcCCCCCCcCCCccCCCCceeE----CCCCEEEEechhhCCH--------HHHHHHHHHHhhCeEEeCCCCceeeeceEE
Confidence 000000000 00011111 2345899999999943 6677787777543 4688
Q ss_pred EEeecchHHH--HhhhcCHHHhhcceEEEeeCCCHHHHHH----HHHHHHHhhhhhcC---CCCChHHHHHHHHHhhhhc
Q psy14504 177 IGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETIS----ILRGLQKKYEVHHG---VEITDPAIVAASELSYRYI 247 (951)
Q Consensus 177 I~at~~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~er~~----il~~~~~~~~~~~~---~~i~~~~l~~~~~~s~~~~ 247 (951)
|++|+.+.-. ..-...+.|..|+..+.+..|+..+|.+ +++.++.++....+ ..+++++++.+....
T Consensus 278 i~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~---- 353 (445)
T TIGR02915 278 VCATNQDLKRMIAEGTFREDLFYRIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHA---- 353 (445)
T ss_pred EEecCCCHHHHHHcCCccHHHHHHhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCC----
Confidence 9998875311 1123456677888877777777777764 44566665544333 468889888776652
Q ss_pred ccCCCchhHHHHHHHHHH
Q psy14504 248 SDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 248 ~~~~~p~~a~~ll~~a~~ 265 (951)
..+.-+...++++.++.
T Consensus 354 -wpgNvreL~~~i~~a~~ 370 (445)
T TIGR02915 354 -WPGNVRELENKVKRAVI 370 (445)
T ss_pred -CCChHHHHHHHHHHHHH
Confidence 11112344555555554
No 451
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.76 E-value=2.5e-08 Score=108.75 Aligned_cols=107 Identities=21% Similarity=0.375 Sum_probs=73.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||||||||+||.+||+.+...+..++++...++........+ . ...+.......+.. ..+|+|||+
T Consensus 185 ~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~-~------~~~~~~~~~~~l~~--~DLLIIDDl 255 (329)
T PRK06835 185 NLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRF-N------NDKELEEVYDLLIN--CDLLIIDDL 255 (329)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHh-c------cchhHHHHHHHhcc--CCEEEEecc
Confidence 69999999999999999999999887888888888877653221111 0 00011111233333 369999999
Q ss_pred c--ccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhh
Q psy14504 552 E--KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 597 (951)
Q Consensus 552 d--~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 597 (951)
. ..++..++.|+.+++... ..+.-+|+|||.++..+
T Consensus 256 G~e~~t~~~~~~Lf~iin~R~----------~~~k~tIiTSNl~~~el 293 (329)
T PRK06835 256 GTEKITEFSKSELFNLINKRL----------LRQKKMIISTNLSLEEL 293 (329)
T ss_pred CCCCCCHHHHHHHHHHHHHHH----------HCCCCEEEECCCCHHHH
Confidence 4 556788899999998521 12234889999987765
No 452
>KOG1970|consensus
Probab=98.75 E-value=1.5e-07 Score=103.92 Aligned_cols=215 Identities=17% Similarity=0.111 Sum_probs=126.7
Q ss_pred HhhcchHHHHhcCCCCCccccHHHHHHHHHHHH-----cCCCC--CcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14504 29 KYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ-----RRSKN--NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 101 (951)
Q Consensus 29 ~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~-----~~~~~--~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~ 101 (951)
.....|.++|+|.+.+++-=+.+-+..+..+|. .+..+ -+||+||+||||||.++.|++++ +.
T Consensus 67 d~~elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskel----------g~ 136 (634)
T KOG1970|consen 67 DEFELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKEL----------GY 136 (634)
T ss_pred cccchhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhh----------Cc
Confidence 345789999999999999888888888777776 33333 35778999999999999999998 44
Q ss_pred eEEEEe-------hhhhh---cC-ccccccHHHHHHHHHHHHH-----------hcCCCeEEEEecccccccCCCCCCch
Q psy14504 102 KILLLD-------IALLL---AG-TKYRGEFEDRLKKILKEIS-----------NNQKDIIIFIDELHTMIGTGKVEGSI 159 (951)
Q Consensus 102 ~~~~~~-------~~~l~---~~-~~~~g~~~~~l~~~~~~a~-----------~~~~~~iL~iDEid~l~~~~~~~~~~ 159 (951)
.+.+-. ...+. .+ .......-..+...+..+. ....+.+|+|||+-..+... ...
T Consensus 137 ~~~Ew~Npi~~~~~~~~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d---~~~ 213 (634)
T KOG1970|consen 137 QLIEWSNPINLKEPENLHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD---DSE 213 (634)
T ss_pred eeeeecCCccccccccccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh---hHH
Confidence 443322 00110 00 0011111112223333331 12346689999997766432 123
Q ss_pred hHHhhhhhhccCCcEEEEEeec-------chHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhh-hcCCCC
Q psy14504 160 DAGNMLKPELSRGELHCIGATT-------LNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEV-HHGVEI 231 (951)
Q Consensus 160 ~~~~~L~~~le~~~i~vI~at~-------~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~-~~~~~i 231 (951)
...+.|+.+...+.+.+|.+-+ ...++. +..+-...-|...|.|.+-...-....|..++..... ..+..+
T Consensus 214 ~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rl-f~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~ 292 (634)
T KOG1970|consen 214 TFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRL-FPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKV 292 (634)
T ss_pred HHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhh-chhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcC
Confidence 4556666666665443333222 122221 1112223336677999999998888888887765321 112333
Q ss_pred C-hHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q psy14504 232 T-DPAIVAASELSYRYISDRFMPDKAIDLIDEA 263 (951)
Q Consensus 232 ~-~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 263 (951)
. ...+..++..+.|.+ +.|+.-|+..
T Consensus 293 ~~~~~v~~i~~~s~GDI------RsAInsLQls 319 (634)
T KOG1970|consen 293 PDTAEVELICQGSGGDI------RSAINSLQLS 319 (634)
T ss_pred chhHHHHHHHHhcCccH------HHHHhHhhhh
Confidence 3 344667778888887 6677666654
No 453
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=1.5e-07 Score=101.25 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=98.2
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC----------ceEEeccccccchhchhc
Q psy14504 448 AISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE----------SIIRIDMSEFIEKHSISR 517 (951)
Q Consensus 448 ~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~----------~~~~~~~~~~~~~~~~~~ 517 (951)
+++.+.+.++..+. .+.+||+|+.|+||+++|+.+++.+++... .+..++..
T Consensus 4 ~~~~l~~~i~~~~l--------~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---------- 65 (299)
T PRK07132 4 WIKFLDNSATQNKI--------SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---------- 65 (299)
T ss_pred HHHHHHHHHHhCCC--------CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC----------
Confidence 46667777765432 247889999999999999999999854210 11111100
Q ss_pred ccCCCCCCccccccchhHHHHH-----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCC
Q psy14504 518 LIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 592 (951)
Q Consensus 518 l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 592 (951)
| +.++.++.+.+.+.+. .+...|++||++|+++...+|.|++.||+ +..+++||++|+.
T Consensus 66 --g---~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEE-----------Pp~~t~~il~~~~ 129 (299)
T PRK07132 66 --D---KDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEE-----------PPKDTYFLLTTKN 129 (299)
T ss_pred --C---CcCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhC-----------CCCCeEEEEEeCC
Confidence 0 1122222222222221 13678999999999999999999999998 7788999988874
Q ss_pred CchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHH
Q psy14504 593 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN 647 (951)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~ 647 (951)
.. .+-|.+.+|| .++.|.|++.+++.+.+.
T Consensus 130 ~~------------------------kll~TI~SRc-~~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 130 IN------------------------KVLPTIVSRC-QVFNVKEPDQQKILAKLL 159 (299)
T ss_pred hH------------------------hChHHHHhCe-EEEECCCCCHHHHHHHHH
Confidence 21 3557889999 799999999999987643
No 454
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.74 E-value=6.1e-08 Score=93.10 Aligned_cols=126 Identities=22% Similarity=0.254 Sum_probs=75.2
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC------------ccccccHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG------------TKYRGEFEDRLKKILKEI 132 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~------------~~~~g~~~~~l~~~~~~a 132 (951)
..+++|+||||||||++++.+|..+.... ..++.++....... .............++..+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPG-------GGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALA 74 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCC-------CCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHH
Confidence 46789999999999999999999883321 23566655432211 111223444566677777
Q ss_pred HhcCCCeEEEEecccccccCCCCCCchhHHh------hhhhhccCCcEEEEEeecchHHHHhhhcCHHHhhcceE-EEee
Q psy14504 133 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGN------MLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVE 205 (951)
Q Consensus 133 ~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~------~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~ 205 (951)
.... +.|+||||++.+..... ..... ............+|+++|... ...+..+..|++. +.+.
T Consensus 75 ~~~~-~~viiiDei~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~~~~~~~~~~~ 145 (148)
T smart00382 75 RKLK-PDVLILDEITSLLDAEQ----EALLLLLEELRLLLLLKSEKNLTVILTTNDEK----DLGPALLRRRFDRRIVLL 145 (148)
T ss_pred HhcC-CCEEEEECCcccCCHHH----HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCc----cCchhhhhhccceEEEec
Confidence 6333 57999999999865321 00000 112233456788888888511 1345556667764 5554
Q ss_pred C
Q psy14504 206 E 206 (951)
Q Consensus 206 ~ 206 (951)
.
T Consensus 146 ~ 146 (148)
T smart00382 146 L 146 (148)
T ss_pred C
Confidence 4
No 455
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.73 E-value=3.4e-07 Score=98.83 Aligned_cols=174 Identities=16% Similarity=0.163 Sum_probs=98.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch---hchhcccCCCCCCcccccc---chhHHH----HHhC
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK---HSISRLIGAPPGYIGYEEG---GYLTEI----VRRK 541 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~---~~~~~l~g~~~~~~g~~~~---~~l~~~----~~~~ 541 (951)
.++++||+|+|||++++.++..+......+..+....+... ..+...+|.+.. +.... ..+... ....
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~--~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETE--GRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCC--CCCHHHHHHHHHHHHHHHHhCC
Confidence 58899999999999999999887422211111111111111 112233344321 21111 122222 2345
Q ss_pred CCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccC
Q psy14504 542 PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFR 621 (951)
Q Consensus 542 ~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~ 621 (951)
...+|+|||++.+++...+.|..+.+- . .+ ....+.+++++..... + .+...-.
T Consensus 123 ~~~vliiDe~~~l~~~~~~~l~~l~~~-~-~~------~~~~~~vvl~g~~~~~---~---------------~l~~~~~ 176 (269)
T TIGR03015 123 KRALLVVDEAQNLTPELLEELRMLSNF-Q-TD------NAKLLQIFLVGQPEFR---E---------------TLQSPQL 176 (269)
T ss_pred CCeEEEEECcccCCHHHHHHHHHHhCc-c-cC------CCCeEEEEEcCCHHHH---H---------------HHcCchh
Confidence 668999999999999888877655442 0 00 1122344555443111 0 1111112
Q ss_pred hhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhc
Q psy14504 622 PEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 622 p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
..+.+|+...+.++|++.+++.+++...+... ...-...+++++++.|.+..
T Consensus 177 ~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~-----g~~~~~~~~~~~~~~i~~~s 228 (269)
T TIGR03015 177 QQLRQRIIASCHLGPLDREETREYIEHRLERA-----GNRDAPVFSEGAFDAIHRFS 228 (269)
T ss_pred HHHHhheeeeeeCCCCCHHHHHHHHHHHHHHc-----CCCCCCCcCHHHHHHHHHHc
Confidence 35778887889999999999999976666432 11112468999999998844
No 456
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.73 E-value=6.6e-08 Score=102.02 Aligned_cols=111 Identities=23% Similarity=0.349 Sum_probs=78.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||||||||+||-||++.+...+.++..+..+++...-..+.- + |. ....+...+ ....||+|||+
T Consensus 107 nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~------~-~~-~~~~l~~~l--~~~dlLIiDDl 176 (254)
T COG1484 107 NLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFD------E-GR-LEEKLLREL--KKVDLLIIDDI 176 (254)
T ss_pred cEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHh------c-Cc-hHHHHHHHh--hcCCEEEEecc
Confidence 69999999999999999999999877889999999988765322211 0 11 111222323 34469999999
Q ss_pred cc--cCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccc
Q psy14504 552 EK--ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 603 (951)
Q Consensus 552 d~--~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~ 603 (951)
.. .++...+.+++++... ..+... |+|||.+...+.+.++.
T Consensus 177 G~~~~~~~~~~~~~q~I~~r----------~~~~~~-~~tsN~~~~~~~~~~~~ 219 (254)
T COG1484 177 GYEPFSQEEADLLFQLISRR----------YESRSL-IITSNLSFGEWDELFGD 219 (254)
T ss_pred cCccCCHHHHHHHHHHHHHH----------Hhhccc-eeecCCChHHHHhhccC
Confidence 76 5566788888877751 122333 89999998887665543
No 457
>PRK12377 putative replication protein; Provisional
Probab=98.72 E-value=4.4e-08 Score=102.39 Aligned_cols=143 Identities=17% Similarity=0.250 Sum_probs=82.0
Q ss_pred HHHhcCCCCCccc----cHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 36 EKARLGKLDPVIG----RDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 36 e~~rp~~l~~lvG----~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
..++..+|+.+.. +...+..+..+... ....+++|+||||||||+||.++|+.+... +..++.++..
T Consensus 66 ~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~~~~~l~l~G~~GtGKThLa~AIa~~l~~~-------g~~v~~i~~~ 138 (248)
T PRK12377 66 PLHRKCSFANYQVQNDGQRYALSQAKSIADELMTGCTNFVFSGKPGTGKNHLAAAIGNRLLAK-------GRSVIVVTVP 138 (248)
T ss_pred cccccCCcCCcccCChhHHHHHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCCeEEEEHH
Confidence 3345567888863 22344443333331 234689999999999999999999998643 5566667766
Q ss_pred hhhcCcc--c-cccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC---CcEEEEEeecch
Q psy14504 110 LLLAGTK--Y-RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---GELHCIGATTLN 183 (951)
Q Consensus 110 ~l~~~~~--~-~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~---~~i~vI~at~~~ 183 (951)
.+...-+ + .+.. ...++..+. ..-+|+|||++....+ ......|..+++. ....+|.|||..
T Consensus 139 ~l~~~l~~~~~~~~~---~~~~l~~l~---~~dLLiIDDlg~~~~s------~~~~~~l~~ii~~R~~~~~ptiitSNl~ 206 (248)
T PRK12377 139 DVMSRLHESYDNGQS---GEKFLQELC---KVDLLVLDEIGIQRET------KNEQVVLNQIIDRRTASMRSVGMLTNLN 206 (248)
T ss_pred HHHHHHHHHHhccch---HHHHHHHhc---CCCEEEEcCCCCCCCC------HHHHHHHHHHHHHHHhcCCCEEEEcCCC
Confidence 6542111 0 0111 223444443 2339999999765321 2334456666642 235567777753
Q ss_pred --HHHHhhhcCHHHhhcc
Q psy14504 184 --EYRQYIEKDAAFERRF 199 (951)
Q Consensus 184 --~~~~~~~~~~~l~~Rf 199 (951)
++.+ .+...+.+|+
T Consensus 207 ~~~l~~--~~~~ri~dRl 222 (248)
T PRK12377 207 HEAMST--LLGERVMDRM 222 (248)
T ss_pred HHHHHH--HhhHHHHHHH
Confidence 2222 2345566655
No 458
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.72 E-value=2.7e-07 Score=97.75 Aligned_cols=139 Identities=17% Similarity=0.066 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC------CcCCCeEEEEehhhhhcCccccccHHH
Q psy14504 51 DEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN------SLLSKKILLLDIALLLAGTKYRGEFED 123 (951)
Q Consensus 51 ~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~------~~~~~~~~~~~~~~l~~~~~~~g~~~~ 123 (951)
...+.+...+...+.+| .||+||+|+||+++|.++|+.+.+...+. .....+++.+....- ++.. ...
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~---~~~I--~id 78 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGK---GRLH--SIE 78 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCC---CCcC--cHH
Confidence 34567777777766665 56889999999999999999997643221 111233433322110 0001 123
Q ss_pred HHHHHHHHHHhc---CCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHhhhcCHHHhhc
Q psy14504 124 RLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERR 198 (951)
Q Consensus 124 ~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~~~~~l~~R 198 (951)
.++.+.+.+... ++..|++||++|.|.. +++|.|+..+|. ..+++|..|+.++ .+.|.++||
T Consensus 79 qiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~--------~AaNaLLK~LEEPp~~~~fiL~~~~~~-----~ll~TI~SR 145 (290)
T PRK05917 79 TPRAIKKQIWIHPYESPYKIYIIHEADRMTL--------DAISAFLKVLEDPPQHGVIILTSAKPQ-----RLPPTIRSR 145 (290)
T ss_pred HHHHHHHHHhhCccCCCceEEEEechhhcCH--------HHHHHHHHHhhcCCCCeEEEEEeCChh-----hCcHHHHhc
Confidence 456666655411 3346999999999954 788999999985 4688888888887 899999999
Q ss_pred ceEEEeeCC
Q psy14504 199 FQKILVEEP 207 (951)
Q Consensus 199 f~~i~~~~p 207 (951)
|..+.|+++
T Consensus 146 cq~~~~~~~ 154 (290)
T PRK05917 146 SLSIHIPME 154 (290)
T ss_pred ceEEEccch
Confidence 999999875
No 459
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.71 E-value=9.4e-09 Score=98.51 Aligned_cols=130 Identities=19% Similarity=0.338 Sum_probs=82.6
Q ss_pred cccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHH
Q psy14504 47 IGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR 124 (951)
Q Consensus 47 vG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~ 124 (951)
||....++++...+.+ ....+|+|+|++||||+++|+.++...... ...++.+++..+.
T Consensus 1 vG~S~~~~~l~~~l~~~a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~-------~~~~~~~~~~~~~------------ 61 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKSSSPVLITGEPGTGKSLLARALHRYSGRA-------NGPFIVIDCASLP------------ 61 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCSSS-EEEECCTTSSHHHHHHCCHHTTTTC-------CS-CCCCCHHCTC------------
T ss_pred CCCCHHHHHHHHHHHHHhCCCCcEEEEcCCCCCHHHHHHHHHhhcCcc-------CCCeEEechhhCc------------
Confidence 5788888888876663 667899999999999999999999865221 2344444443321
Q ss_pred HHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc---CCcEEEEEeecchHHH--HhhhcCHHHhhcc
Q psy14504 125 LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLNEYR--QYIEKDAAFERRF 199 (951)
Q Consensus 125 l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le---~~~i~vI~at~~~~~~--~~~~~~~~l~~Rf 199 (951)
.++++.+ .+..|||+|++.|.+ +.+..|...++ ..++++|++++.+-.. +.-.+++.|..||
T Consensus 62 -~~~l~~a----~~gtL~l~~i~~L~~--------~~Q~~L~~~l~~~~~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l 128 (138)
T PF14532_consen 62 -AELLEQA----KGGTLYLKNIDRLSP--------EAQRRLLDLLKRQERSNVRLIASSSQDLEELVEEGRFSPDLYYRL 128 (138)
T ss_dssp -HHHHHHC----TTSEEEEECGCCS-H--------HHHHHHHHHHHHCTTTTSEEEEEECC-CCCHHHHSTHHHHHHHHC
T ss_pred -HHHHHHc----CCCEEEECChHHCCH--------HHHHHHHHHHHhcCCCCeEEEEEeCCCHHHHhhccchhHHHHHHh
Confidence 3344444 355899999999944 55666666664 4578888888765321 2223567777888
Q ss_pred eEEEeeCCC
Q psy14504 200 QKILVEEPD 208 (951)
Q Consensus 200 ~~i~~~~p~ 208 (951)
..+.+..|+
T Consensus 129 ~~~~i~lPp 137 (138)
T PF14532_consen 129 SQLEIHLPP 137 (138)
T ss_dssp STCEEEE--
T ss_pred CCCEEeCCC
Confidence 765554443
No 460
>KOG0478|consensus
Probab=98.71 E-value=8.5e-08 Score=108.12 Aligned_cols=184 Identities=12% Similarity=0.197 Sum_probs=107.7
Q ss_pred HHHHhhccCCChHHHHHHHHHHHHhhhcC-CC--CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14504 434 IENLLCKRVVGQDEAISAVSNAIRRSRSG-LS--DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510 (951)
Q Consensus 434 l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~-~~--~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 510 (951)
|.+.+-..|.|.+.+++.+.-.+--.... .. ..-+..-++||+|.||||||.+-+.+++.+-. ...++...+.-
T Consensus 423 La~SiAPsIye~edvKkglLLqLfGGt~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pR--g~yTSGkGsSa- 499 (804)
T KOG0478|consen 423 LARSIAPSIYELEDVKKGLLLQLFGGTRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPR--GVYTSGKGSSA- 499 (804)
T ss_pred HHHhhchhhhcccchhhhHHHHHhcCCcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCc--ceeecCCccch-
Confidence 44556667888888888877766322110 00 01222348999999999999999999998821 11111111110
Q ss_pred chhchhcccCCCCCCcccccc-chh---HHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCC-CeEeec-CCe
Q psy14504 511 EKHSISRLIGAPPGYIGYEEG-GYL---TEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTINF-RNT 584 (951)
Q Consensus 511 ~~~~~~~l~g~~~~~~g~~~~-~~l---~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~~~-~~~ 584 (951)
+|-.. |+-.+.. +++ ..++-.+.++|..|||+||++.+.++.|+++||.-++.... |.-..+ .++
T Consensus 500 --------vGLTa-yVtrd~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~ 570 (804)
T KOG0478|consen 500 --------VGLTA-YVTKDPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARC 570 (804)
T ss_pred --------hccee-eEEecCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccc
Confidence 01111 2222111 111 12334466799999999999999999999999987666554 333332 467
Q ss_pred EEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcE-EEecCCChh
Q psy14504 585 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDI-IVFRYLNRK 640 (951)
Q Consensus 585 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~-i~f~~l~~~ 640 (951)
-|++++|.-...++... .+.+ .=.++|.|++|||.+ +.+.+.++.
T Consensus 571 SVLAaANP~~skynp~k---------~i~e--NI~LpptLLSRFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 571 SVLAAANPIRSKYNPNK---------SIIE--NINLPPTLLSRFDLIFLLLDKPDER 616 (804)
T ss_pred eeeeeeccccccCCCCC---------chhh--ccCCChhhhhhhcEEEEEecCcchh
Confidence 78888884322221100 0000 014789999999973 445555554
No 461
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.70 E-value=1.7e-07 Score=109.65 Aligned_cols=174 Identities=13% Similarity=0.134 Sum_probs=113.8
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCC----CccccccchhHHHHHhCCCeEE
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG----YIGYEEGGYLTEIVRRKPYSLI 546 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~----~~g~~~~~~l~~~~~~~~~~vl 546 (951)
+.+++.|+.||+||+++++++..+-. ..+|..+-.+ .+...++|.-.= ..|.. ..-...+..+.++||
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~-~~p~r~~p~~-----~t~~~L~Gg~Dl~~~l~~g~~--~~~pGlla~Ah~GvL 97 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPA-GTPLRRLPPG-----IADDRLLGGLDLAATLRAGRP--VAQRGLLAEADGGVL 97 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCC-CCCcccCCCC-----CcHHHccCCchHHhHhhcCCc--CCCCCceeeccCCEE
Confidence 46999999999999999999998832 2344433322 233455554200 00000 011234567778999
Q ss_pred EEccccccCHHHHHHHHHHhhcceeecC-CCeEeecC-CeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhH
Q psy14504 547 LLDEIEKANSDVFNILLQILDDGRLTDN-RGRTINFR-NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF 624 (951)
Q Consensus 547 ~iDEid~~~~~~~~~Ll~~le~g~~~~~-~g~~~~~~-~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l 624 (951)
|+||+..+++.+++.|++.|++|.++.. .|.++.+. +.++|+| ..+.. ..+.+++.+
T Consensus 98 ~lDe~n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat-~~~~~--------------------~~~~L~~~l 156 (584)
T PRK13406 98 VLAMAERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVAL-DEGAE--------------------EDERAPAAL 156 (584)
T ss_pred EecCcccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEec-CCChh--------------------cccCCCHHh
Confidence 9999999999999999999999998864 36666654 4455554 22211 124688999
Q ss_pred hhccCcEEEecCCChhhHHHH--HHHHHHHHHHHHHhcCCccccchHHHHHHHHh
Q psy14504 625 INRIDDIIVFRYLNRKNILSI--ANIQLNILKNKLLKMNMDLKISKAALKKISNI 677 (951)
Q Consensus 625 ~~R~~~~i~f~~l~~~~~~~i--~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 677 (951)
++||+..|.+.+++..+.... ....+....+++. .+.++++++++++..
T Consensus 157 LDRf~l~v~v~~~~~~~~~~~~~~~~~I~~AR~rl~----~v~v~~~~l~~i~~~ 207 (584)
T PRK13406 157 ADRLAFHLDLDGLALRDAREIPIDADDIAAARARLP----AVGPPPEAIAALCAA 207 (584)
T ss_pred HhheEEEEEcCCCChHHhcccCCCHHHHHHHHHHHc----cCCCCHHHHHHHHHH
Confidence 999999999999887665321 1122223333332 377888888888764
No 462
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.70 E-value=3.6e-07 Score=90.92 Aligned_cols=176 Identities=20% Similarity=0.284 Sum_probs=117.4
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccC
Q psy14504 441 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 520 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 520 (951)
.++|-+...+.+.+...+-..|. |-.++||+|.-|||||++.||+-.++...+..++.++-.++..-
T Consensus 61 ~l~Gvd~qk~~L~~NT~~F~~G~-----pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~L-------- 127 (287)
T COG2607 61 DLVGVDRQKEALVRNTEQFAEGL-----PANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLATL-------- 127 (287)
T ss_pred HHhCchHHHHHHHHHHHHHHcCC-----cccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhhH--------
Confidence 45677777887777776655553 44589999999999999999999999888888888776655432
Q ss_pred CCCCCccccccchhHHHHHhCC-CeEEEEcccccc-CHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhh
Q psy14504 521 APPGYIGYEEGGYLTEIVRRKP-YSLILLDEIEKA-NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 598 (951)
Q Consensus 521 ~~~~~~g~~~~~~l~~~~~~~~-~~vl~iDEid~~-~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 598 (951)
..+.+.++..+ .=|||+|+..-= .......|-.+||.|. .-...|++|-+|||...- +.
T Consensus 128 -----------p~l~~~Lr~~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~v-------e~rP~NVl~YATSNRRHL-l~ 188 (287)
T COG2607 128 -----------PDLVELLRARPEKFILFCDDLSFEEGDDAYKALKSALEGGV-------EGRPANVLFYATSNRRHL-LP 188 (287)
T ss_pred -----------HHHHHHHhcCCceEEEEecCCCCCCCchHHHHHHHHhcCCc-------ccCCCeEEEEEecCCccc-cc
Confidence 23445555444 468899987432 3456777888888643 234578899999996432 12
Q ss_pred hhcccc---HHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 599 EMEKGD---KEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 599 ~~~~~~---~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
+...+. ..++ .-.+.++..+ .|-+||.--+.|.|.++++..+|+....++
T Consensus 189 e~~~dn~~~~~ei--h~~eaveEKl--SlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~ 241 (287)
T COG2607 189 EDMKDNEGSTGEI--HPSEAVEEKL--SLSDRFGLWLSFYPCDQDEYLKIVDHYAKH 241 (287)
T ss_pred HhhhhCCCccccc--ChhHHHHHhh--chhhhcceeecccCCCHHHHHHHHHHHHHH
Confidence 221110 0000 0011122222 355899999999999999999998876644
No 463
>PRK08116 hypothetical protein; Validated
Probab=98.70 E-value=2e-07 Score=99.49 Aligned_cols=159 Identities=17% Similarity=0.220 Sum_probs=88.1
Q ss_pred HHHHhcCCCCCccccH---HHHHHHHHHHHc-----CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 35 TEKARLGKLDPVIGRD---DEIRRAIQVLQR-----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 35 ~e~~rp~~l~~lvG~~---~~i~~l~~~l~~-----~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
.++++..+|+.++-.+ ..+..+..++.. ....+++|+|+||||||+||.++|+.+... +..++.+
T Consensus 76 ~~~~~~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~-------~~~v~~~ 148 (268)
T PRK08116 76 DEKFRNSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEK-------GVPVIFV 148 (268)
T ss_pred CHHHHhcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEE
Confidence 4667777888876322 223333333331 223459999999999999999999998653 4567777
Q ss_pred ehhhhhcCc--cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc---CCcEEEEEeec
Q psy14504 107 DIALLLAGT--KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATT 181 (951)
Q Consensus 107 ~~~~l~~~~--~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le---~~~i~vI~at~ 181 (951)
+...+.... .+.+........++..+.. .-+|+|||++.... +...+..|..++. +....+|.|||
T Consensus 149 ~~~~ll~~i~~~~~~~~~~~~~~~~~~l~~---~dlLviDDlg~e~~------t~~~~~~l~~iin~r~~~~~~~IiTsN 219 (268)
T PRK08116 149 NFPQLLNRIKSTYKSSGKEDENEIIRSLVN---ADLLILDDLGAERD------TEWAREKVYNIIDSRYRKGLPTIVTTN 219 (268)
T ss_pred EHHHHHHHHHHHHhccccccHHHHHHHhcC---CCEEEEecccCCCC------CHHHHHHHHHHHHHHHHCCCCEEEECC
Confidence 776654211 0111111122334444432 22899999964321 1122333444443 12345666777
Q ss_pred chHHHHhhhcCHHHhhcc----eEEEeeCCCH
Q psy14504 182 LNEYRQYIEKDAAFERRF----QKILVEEPDI 209 (951)
Q Consensus 182 ~~~~~~~~~~~~~l~~Rf----~~i~~~~p~~ 209 (951)
...-.-....+..+.+|+ ..|.+.-++.
T Consensus 220 ~~~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 220 LSLEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred CCHHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 643111112567888885 3477766664
No 464
>PF13173 AAA_14: AAA domain
Probab=98.70 E-value=7e-08 Score=91.14 Aligned_cols=124 Identities=21% Similarity=0.253 Sum_probs=80.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEec
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDE 145 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDE 145 (951)
+.++|+||.||||||+++.+++.+. ...+++.+++.+..... .....+...+.+.. ..++.+|||||
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--------~~~~~~yi~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~i~iDE 69 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--------PPENILYINFDDPRDRR----LADPDLLEYFLELI-KPGKKYIFIDE 69 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--------ccccceeeccCCHHHHH----HhhhhhHHHHHHhh-ccCCcEEEEeh
Confidence 4578999999999999999999874 13456666665443210 00000223333221 23567999999
Q ss_pred ccccccCCCCCCchhHHhhhhhhccCC-cEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHH
Q psy14504 146 LHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEET 212 (951)
Q Consensus 146 id~l~~~~~~~~~~~~~~~L~~~le~~-~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er 212 (951)
++.+ .+....++.+.+.+ .+.+|.|++....- .......+..|...+++.|++..|-
T Consensus 70 iq~~---------~~~~~~lk~l~d~~~~~~ii~tgS~~~~l-~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 70 IQYL---------PDWEDALKFLVDNGPNIKIILTGSSSSLL-SKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred hhhh---------ccHHHHHHHHHHhccCceEEEEccchHHH-hhcccccCCCeEEEEEECCCCHHHh
Confidence 9988 35556677777665 56777777665421 1134456777888899999998763
No 465
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.70 E-value=9.6e-08 Score=91.70 Aligned_cols=118 Identities=21% Similarity=0.256 Sum_probs=68.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhc---cc-CCCCCCccccccchhHHHHHhCCCeEEE
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISR---LI-GAPPGYIGYEEGGYLTEIVRRKPYSLIL 547 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~---l~-g~~~~~~g~~~~~~l~~~~~~~~~~vl~ 547 (951)
+++|+||||||||++++.+|..+......++.++++.......... .. .......+..........++....++||
T Consensus 4 ~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vii 83 (148)
T smart00382 4 VILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDVLI 83 (148)
T ss_pred EEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6999999999999999999999965444577787776544322110 00 0001111111123334445555569999
Q ss_pred EccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCC
Q psy14504 548 LDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 592 (951)
Q Consensus 548 iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 592 (951)
+||++.+.......+...... ...........+..+|+++|.
T Consensus 84 iDei~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 84 LDEITSLLDAEQEALLLLLEE---LRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred EECCcccCCHHHHHHHHhhhh---hHHHHHHHhcCCCEEEEEeCC
Confidence 999999987766654432100 000000013356678888884
No 466
>PRK09183 transposase/IS protein; Provisional
Probab=98.69 E-value=5e-08 Score=103.57 Aligned_cols=107 Identities=21% Similarity=0.336 Sum_probs=72.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHH--hCCCeEEEEc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR--RKPYSLILLD 549 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~--~~~~~vl~iD 549 (951)
+++|+||||||||++|.+|+..+...+..+..+++.++......... . +.+...+. .....+++||
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~-----------~-~~~~~~~~~~~~~~dlLiiD 171 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQR-----------Q-GRYKTTLQRGVMAPRLLIID 171 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHH-----------C-CcHHHHHHHHhcCCCEEEEc
Confidence 69999999999999999999887666777777777665533111100 0 01112221 2345799999
Q ss_pred cccc--cCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhc
Q psy14504 550 EIEK--ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 601 (951)
Q Consensus 550 Eid~--~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~ 601 (951)
|++. +++...+.|+++++.. ..+..+|+|||.+...+...+
T Consensus 172 dlg~~~~~~~~~~~lf~li~~r-----------~~~~s~iiTsn~~~~~w~~~~ 214 (259)
T PRK09183 172 EIGYLPFSQEEANLFFQVIAKR-----------YEKGSMILTSNLPFGQWDQTF 214 (259)
T ss_pred ccccCCCChHHHHHHHHHHHHH-----------HhcCcEEEecCCCHHHHHHHh
Confidence 9986 4567777899998751 112237899999998886654
No 467
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.69 E-value=3.1e-07 Score=107.67 Aligned_cols=181 Identities=19% Similarity=0.244 Sum_probs=114.8
Q ss_pred CCCCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC-----
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG----- 114 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~----- 114 (951)
.+.+++|....+..+...+. .....++++.|++|||||++|++++..... .+.+++.++|+.+...
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~i~i~c~~~~~~~~~~~ 208 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGRLSRSSISVLINGESGTGKELVAHALHRHSPR-------AKAPFIALNMAAIPKDLIESE 208 (469)
T ss_pred ccccceecCHHHHHHHHHHHHHhccCCeEEEEeCCCCcHHHHHHHHHhcCCC-------CCCCeEeeeCCCCCHHHHHHH
Confidence 46689999988877776554 345667999999999999999999986522 2568888888665210
Q ss_pred --c----cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEE
Q psy14504 115 --T----KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELH 175 (951)
Q Consensus 115 --~----~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~ 175 (951)
+ .+.|... .....+.. ..+..|||||++.|.. ..+..|..+++.+ +++
T Consensus 209 lfg~~~g~~~~~~~-~~~g~~~~----a~~Gtl~l~~i~~l~~--------~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 275 (469)
T PRK10923 209 LFGHEKGAFTGANT-IRQGRFEQ----ADGGTLFLDEIGDMPL--------DVQTRLLRVLADGQFYRVGGYAPVKVDVR 275 (469)
T ss_pred hcCCCCCCCCCCCc-CCCCCeeE----CCCCEEEEeccccCCH--------HHHHHHHHHHhcCcEEeCCCCCeEEeeEE
Confidence 0 0000000 00001111 2244799999999843 6666787777644 358
Q ss_pred EEEeecchHHH--HhhhcCHHHhhcceEEEeeCCCHHHHH----HHHHHHHHhhhhhcC---CCCChHHHHHHHHH
Q psy14504 176 CIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG---VEITDPAIVAASEL 242 (951)
Q Consensus 176 vI~at~~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~er~----~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 242 (951)
+|++|+.+... +.-...+.|..||..+.+..|+..+|. .+++.++.++....+ ..++++++..+..+
T Consensus 276 ii~~~~~~l~~~~~~~~~~~~L~~~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 351 (469)
T PRK10923 276 IIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRL 351 (469)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhC
Confidence 89988765311 111345778889987666666655554 455666666544332 35788888776654
No 468
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.68 E-value=9.9e-08 Score=99.49 Aligned_cols=108 Identities=20% Similarity=0.286 Sum_probs=71.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||||||||+||.+||..+...+..+..++.+++....... +.. . ..++ ..+...+. ...+|+|||+
T Consensus 101 ~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~~~--~~~-~---~~~~-~~~l~~l~--~~dlLvIDDi 171 (244)
T PRK07952 101 SFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDT--FSN-S---ETSE-EQLLNDLS--NVDLLVIDEI 171 (244)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHHHH--Hhh-c---cccH-HHHHHHhc--cCCEEEEeCC
Confidence 699999999999999999999997777788888877765431111 000 0 0011 12223333 4579999999
Q ss_pred cccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhh
Q psy14504 552 EKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 598 (951)
Q Consensus 552 d~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 598 (951)
+... ......|+++++.. ...+.-+|+|||.....+.
T Consensus 172 g~~~~s~~~~~~l~~Ii~~R----------y~~~~~tiitSNl~~~~l~ 210 (244)
T PRK07952 172 GVQTESRYEKVIINQIVDRR----------SSSKRPTGMLTNSNMEEMT 210 (244)
T ss_pred CCCCCCHHHHHHHHHHHHHH----------HhCCCCEEEeCCCCHHHHH
Confidence 7654 44566888888851 1123458899999877653
No 469
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.66 E-value=9.9e-08 Score=99.49 Aligned_cols=148 Identities=16% Similarity=0.215 Sum_probs=86.2
Q ss_pred hHHHHhcCCCCCccc----cHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14504 34 LTEKARLGKLDPVIG----RDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 107 (951)
Q Consensus 34 l~e~~rp~~l~~lvG----~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 107 (951)
+.+.++..+|+.+.- +...+..+..+... ....+++|+|+||||||+|+.++|..+... +..++.++
T Consensus 62 i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~-------g~~v~~it 134 (244)
T PRK07952 62 IRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLR-------GKSVLIIT 134 (244)
T ss_pred CCccccCCccccccCCCchHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhc-------CCeEEEEE
Confidence 345567788998863 23345555555443 223589999999999999999999998553 56777777
Q ss_pred hhhhhcCcccc-ccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc---CCcEEEEEeecch
Q psy14504 108 IALLLAGTKYR-GEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLN 183 (951)
Q Consensus 108 ~~~l~~~~~~~-g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le---~~~i~vI~at~~~ 183 (951)
...+...-+.. .........++..+.. .-+|+|||++.... +......|..+++ .....+|.+||..
T Consensus 135 ~~~l~~~l~~~~~~~~~~~~~~l~~l~~---~dlLvIDDig~~~~------s~~~~~~l~~Ii~~Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 135 VADIMSAMKDTFSNSETSEEQLLNDLSN---VDLLVIDEIGVQTE------SRYEKVIINQIVDRRSSSKRPTGMLTNSN 205 (244)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHhcc---CCEEEEeCCCCCCC------CHHHHHHHHHHHHHHHhCCCCEEEeCCCC
Confidence 76665211100 0001112345555442 33999999987632 1122234445553 2235566667753
Q ss_pred --HHHHhhhcCHHHhhcc
Q psy14504 184 --EYRQYIEKDAAFERRF 199 (951)
Q Consensus 184 --~~~~~~~~~~~l~~Rf 199 (951)
++.+ .++..+.+|+
T Consensus 206 ~~~l~~--~~g~ri~sRl 221 (244)
T PRK07952 206 MEEMTK--LLGERVMDRM 221 (244)
T ss_pred HHHHHH--HhChHHHHHH
Confidence 3322 3456666666
No 470
>KOG0377|consensus
Probab=98.66 E-value=6.6e-09 Score=109.77 Aligned_cols=117 Identities=24% Similarity=0.414 Sum_probs=82.0
Q ss_pred cccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhcc
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININ 757 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~ 757 (951)
...+||+||.+++|--.+-+-++..+..-++|.||++|||..+++||-.+..+ ++.++.-+||||+++++...+..
T Consensus 167 VTiCGDLHGklDDL~~I~yKNGlPS~~npYvFNGDFVDRGk~siEvLmiL~a~~lv~P~~~~LNRGNHED~mmNlRYGF~ 246 (631)
T KOG0377|consen 167 VTICGDLHGKLDDLLVILYKNGLPSSSNPYVFNGDFVDRGKRSIEVLMILFALYLVYPNAVHLNRGNHEDHMMNLRYGFI 246 (631)
T ss_pred eEEeccccccccceEEEEecCCCCCCCCCeeecCchhhccccchhhHHHHHHHHhcCchhhhccCCchHHHHHHHHHhHH
Confidence 45689999997777666666676666778999999999999999999888776 55688899999999987554421
Q ss_pred c---CCccccHHHhhCCCCHHHHHHHHhcCCce-EEeCCEEEEecccCcC
Q psy14504 758 K---KSKLDTFDDILDAPDKKKLVSWLRTQPLA-IYYKKYLMIHAGVAKQ 803 (951)
Q Consensus 758 ~---~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~~~~~~~vHAG~~p~ 803 (951)
. .+....-..+ ..-+-++++=||+. +.+.++++||||+...
T Consensus 247 kEv~~KYk~~~k~I-----lr~leevy~WLPi~tiid~~ilvvHGGiSd~ 291 (631)
T KOG0377|consen 247 KEVESKYKRHGKRI-----LRFLEEVYRWLPIGTIIDSRILVVHGGISDS 291 (631)
T ss_pred HHHHHHhhhcccHH-----HHHHHHHHHhcchhhhcccceEEEecCcccc
Confidence 1 0000000011 12233444447887 5567899999999863
No 471
>KOG1942|consensus
Probab=98.66 E-value=3.7e-07 Score=92.79 Aligned_cols=114 Identities=20% Similarity=0.169 Sum_probs=78.5
Q ss_pred CeEEEEecccccccCCCCCCchhHHhhhhhhccCC-cEEEEEeecchHH--------HHhhhcCHHHhhcceEEEeeCCC
Q psy14504 138 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLNEY--------RQYIEKDAAFERRFQKILVEEPD 208 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-~i~vI~at~~~~~--------~~~~~~~~~l~~Rf~~i~~~~p~ 208 (951)
|.||||||+|.| ..+....|...+++. .-++|+++|+-.. ..-..+++.++.|+-.|+..+++
T Consensus 297 PGVLFIDEVhML--------DiEcFTyL~kalES~iaPivifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~ 368 (456)
T KOG1942|consen 297 PGVLFIDEVHML--------DIECFTYLHKALESPIAPIVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYD 368 (456)
T ss_pred CcceEeeehhhh--------hhHHHHHHHHHhcCCCCceEEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCC
Confidence 689999999998 245556677777653 3456666664211 11235788999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhH
Q psy14504 209 IEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 209 ~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~ 268 (951)
.++..+|++.-.+ ..++.++++++..++.+..+-. -+.++.|+.-+...++
T Consensus 369 ~~e~r~Ii~~Ra~----~E~l~~~e~a~~~l~~~gt~ts-----LRy~vqLl~p~~~~ak 419 (456)
T KOG1942|consen 369 EEEIRQIIKIRAQ----VEGLQVEEEALDLLAEIGTSTS-----LRYAVQLLTPASILAK 419 (456)
T ss_pred HHHHHHHHHHHHh----hhcceecHHHHHHHHhhccchh-----HHHHHHhcCHHHHHHH
Confidence 9999999976555 3678899999998887643321 2445555554433333
No 472
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.63 E-value=2.6e-07 Score=105.75 Aligned_cols=150 Identities=19% Similarity=0.265 Sum_probs=93.1
Q ss_pred CCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCc------------------CCCe
Q psy14504 41 GKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL------------------LSKK 102 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~------------------~~~~ 102 (951)
..|.+++|+...++.+.-. .....+++|+||||+|||++++.++..+........+ ...+
T Consensus 188 ~d~~~v~Gq~~~~~al~la--a~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rP 265 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEIT--AAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRP 265 (506)
T ss_pred cCeEEEECcHHHHhhhhee--ccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCC
Confidence 3788889998877776433 3445789999999999999999999765321100000 0111
Q ss_pred EE----EEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC------
Q psy14504 103 IL----LLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------ 172 (951)
Q Consensus 103 ~~----~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~------ 172 (951)
+. ......+..|+. . .-...+..+ ...+|||||++.+. ...++.|++.|+.+
T Consensus 266 fr~ph~~~s~~~l~GGg~-----~-~~pG~l~~A----~gGvLfLDEi~e~~--------~~~~~~L~~~LE~g~v~I~r 327 (506)
T PRK09862 266 FRSPHHSASLTAMVGGGA-----I-PGPGEISLA----HNGVLFLDELPEFE--------RRTLDALREPIESGQIHLSR 327 (506)
T ss_pred ccCCCccchHHHHhCCCc-----e-ehhhHhhhc----cCCEEecCCchhCC--------HHHHHHHHHHHHcCcEEEec
Confidence 11 111112222111 0 011223333 24599999998873 36677888888654
Q ss_pred ---------cEEEEEeecchHHHHh----------------hhcCHHHhhcceE-EEeeCCCHH
Q psy14504 173 ---------ELHCIGATTLNEYRQY----------------IEKDAAFERRFQK-ILVEEPDIE 210 (951)
Q Consensus 173 ---------~i~vI~at~~~~~~~~----------------~~~~~~l~~Rf~~-i~~~~p~~~ 210 (951)
++.+|+|+|+.+...+ -.++.++++||+. +.+++|+.+
T Consensus 328 ~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~ 391 (506)
T PRK09862 328 TRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPG 391 (506)
T ss_pred CCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHH
Confidence 3689999998652111 2478899999997 999998765
No 473
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=98.63 E-value=6.6e-07 Score=101.39 Aligned_cols=184 Identities=23% Similarity=0.293 Sum_probs=113.3
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc----cc-ch-
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE----FI-EK- 512 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~----~~-~~- 512 (951)
++.++|++++++.+...++....++..+++ .++|+||||+|||+||+.|++.+-. .++.++...+ +. ++
T Consensus 75 F~d~yGlee~ieriv~~l~~Aa~gl~~~~~---IL~LvGPpG~GKSsLa~~la~~le~--~~~Y~~kg~~~~sP~~e~PL 149 (644)
T PRK15455 75 FEEFYGMEEAIEQIVSYFRHAAQGLEEKKQ---ILYLLGPVGGGKSSLAERLKSLMER--VPIYVLKANGERSPVNESPL 149 (644)
T ss_pred hhcccCcHHHHHHHHHHHHHHHHhcCCCCc---eEEEecCCCCCchHHHHHHHHHHHh--CcceeecCCCCCCCCCCCCC
Confidence 346889999999999999877777754332 6899999999999999999998721 1333332211 00 00
Q ss_pred ---------hchhcccCCCCCCc------------------------------------------------------ccc
Q psy14504 513 ---------HSISRLIGAPPGYI------------------------------------------------------GYE 529 (951)
Q Consensus 513 ---------~~~~~l~g~~~~~~------------------------------------------------------g~~ 529 (951)
......+|-+..++ |.-
T Consensus 150 ~L~p~~~~~~~le~~~gi~~r~i~g~lsP~~r~rL~e~~Gd~~~~~V~r~~~S~~~riGIg~~eP~D~~nQD~s~L~G~v 229 (644)
T PRK15455 150 GLFDPDEDGPILEEEYGIPRRYLGTIMSPWAVKRLHEFGGDISKFRVVKVYPSILRQIAIAKTEPGDENNQDISSLVGKV 229 (644)
T ss_pred CCCChhhhHHHHHHHhCCCccccCCCCCHHHHHHHHHhCCCchheEEEEEeeccccceEEEecCCCCCCCCChhHhccce
Confidence 00011111110000 000
Q ss_pred ccchh-------------HHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchh
Q psy14504 530 EGGYL-------------TEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDK 596 (951)
Q Consensus 530 ~~~~l-------------~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~ 596 (951)
..+.+ .+.+..+..|++=|=|+-|++..++.-||.+.++|.+....|...-.-+.+||+.||..
T Consensus 230 di~kl~~ys~~dp~aysf~G~L~~aNrGl~EFvEm~K~~~~~L~~LLtatQE~~i~~~~~~~~i~~D~vIiaHsNE~--- 306 (644)
T PRK15455 230 DIRKLEHYAQNDPDAYSYSGGLCRANQGLLEFVEMFKAPIKVLHPLLTATQEGNYNGTEGIGAIPFDGIILAHSNES--- 306 (644)
T ss_pred eHHhhhccCCCCCccccCCchhhhccCCcEeeHHHhcCcHHHHHHhcCCCccCcccCCCCcceeccceeEEecCCHH---
Confidence 00001 11222334466666688999999999999999999986655543334567888999942
Q ss_pred hhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCCh-hhHHHH
Q psy14504 597 IKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KNILSI 645 (951)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~-~~~~~i 645 (951)
............+|++|+ .+|.+|...+ .+=.+|
T Consensus 307 --------------E~~~F~~nk~nEA~~DRi-~~V~VPY~lr~~eE~kI 341 (644)
T PRK15455 307 --------------EWQTFRNNKNNEAFLDRI-YIVKVPYCLRVSEEIKI 341 (644)
T ss_pred --------------HHHHHhcCccchhhhceE-EEEeCCccCChhHHHHH
Confidence 122223456788999999 6788887555 344456
No 474
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.63 E-value=1.4e-06 Score=93.71 Aligned_cols=147 Identities=14% Similarity=0.097 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCC---CCCcCCCeEEEEehhhhhcCccccccHHHHHH
Q psy14504 51 DEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEV---PNSLLSKKILLLDIALLLAGTKYRGEFEDRLK 126 (951)
Q Consensus 51 ~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~ 126 (951)
..++.+...+..+...|+ ||+|+.|+||+++|+.+++.+.+... ........+..++... . .. ....++
T Consensus 3 ~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g----~-~i--~vd~Ir 75 (299)
T PRK07132 3 NWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD----K-DL--SKSEFL 75 (299)
T ss_pred hHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC----C-cC--CHHHHH
Confidence 345666677777666666 58899999999999999999855321 1000011223232101 1 01 123456
Q ss_pred HHHHHHHhc----CCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHhhhcCHHHhhcce
Q psy14504 127 KILKEISNN----QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQ 200 (951)
Q Consensus 127 ~~~~~a~~~----~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~ 200 (951)
.+.+.+.-. ++..|++||+++.+. ..+++.|+..+|. ..+++|.+|+.+. .+-+++++||.
T Consensus 76 ~l~~~~~~~~~~~~~~KvvII~~~e~m~--------~~a~NaLLK~LEEPp~~t~~il~~~~~~-----kll~TI~SRc~ 142 (299)
T PRK07132 76 SAINKLYFSSFVQSQKKILIIKNIEKTS--------NSLLNALLKTIEEPPKDTYFLLTTKNIN-----KVLPTIVSRCQ 142 (299)
T ss_pred HHHHHhccCCcccCCceEEEEecccccC--------HHHHHHHHHHhhCCCCCeEEEEEeCChH-----hChHHHHhCeE
Confidence 666665422 356799999999883 4678899999975 4577777777666 78899999999
Q ss_pred EEEeeCCCHHHHHHHHH
Q psy14504 201 KILVEEPDIEETISILR 217 (951)
Q Consensus 201 ~i~~~~p~~~er~~il~ 217 (951)
.++|.+|+.++....|.
T Consensus 143 ~~~f~~l~~~~l~~~l~ 159 (299)
T PRK07132 143 VFNVKEPDQQKILAKLL 159 (299)
T ss_pred EEECCCCCHHHHHHHHH
Confidence 99999999998887765
No 475
>PRK15115 response regulator GlrR; Provisional
Probab=98.62 E-value=7.8e-07 Score=103.49 Aligned_cols=192 Identities=15% Similarity=0.211 Sum_probs=120.8
Q ss_pred CccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHH
Q psy14504 45 PVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE 122 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 122 (951)
.++|....+.+++.... .....+++++|++|||||++|+++.+.... .+.+++.++|..+.. .. .
T Consensus 135 ~lig~s~~~~~~~~~~~~~a~~~~~vli~Ge~GtGk~~lA~~ih~~s~r-------~~~~f~~i~c~~~~~--~~---~- 201 (444)
T PRK15115 135 AIVTRSPLMLRLLEQARMVAQSDVSVLINGQSGTGKEILAQAIHNASPR-------ASKPFIAINCGALPE--QL---L- 201 (444)
T ss_pred cccccCHHHHHHHHHHHhhccCCCeEEEEcCCcchHHHHHHHHHHhcCC-------CCCCeEEEeCCCCCH--HH---H-
Confidence 57888888777766443 344567999999999999999999986522 256788888865421 00 0
Q ss_pred HHHHHHHHHH--------------HhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEE
Q psy14504 123 DRLKKILKEI--------------SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELH 175 (951)
Q Consensus 123 ~~l~~~~~~a--------------~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~ 175 (951)
-..+|... .....+.+|||||++.|.. ..+..|...++.+ +++
T Consensus 202 --~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l~~--------~~q~~L~~~l~~~~~~~~g~~~~~~~~~r 271 (444)
T PRK15115 202 --ESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDMPA--------PLQVKLLRVLQERKVRPLGSNRDIDIDVR 271 (444)
T ss_pred --HHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccCCH--------HHHHHHHHHHhhCCEEeCCCCceeeeeEE
Confidence 01111110 0112245899999999954 5666777777543 468
Q ss_pred EEEeecchHHHH--hhhcCHHHhhcceEEEeeCCCHHHHHH----HHHHHHHhhhhhcC---CCCChHHHHHHHHHh-hh
Q psy14504 176 CIGATTLNEYRQ--YIEKDAAFERRFQKILVEEPDIEETIS----ILRGLQKKYEVHHG---VEITDPAIVAASELS-YR 245 (951)
Q Consensus 176 vI~at~~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~~er~~----il~~~~~~~~~~~~---~~i~~~~l~~~~~~s-~~ 245 (951)
+|++|+.+.... .-...+.+..|+..+.+..|+..+|.+ +++.++.++....+ ..+++++++.+.... .+
T Consensus 272 ii~~~~~~l~~~~~~~~f~~~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~Wpg 351 (444)
T PRK15115 272 IISATHRDLPKAMARGEFREDLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPG 351 (444)
T ss_pred EEEeCCCCHHHHHHcCCccHHHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCC
Confidence 898888653111 112446677788878888888877753 44566665543332 358999998877653 22
Q ss_pred hcccCCCchhHHHHHHHHHH
Q psy14504 246 YISDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 246 ~~~~~~~p~~a~~ll~~a~~ 265 (951)
-+ +...++++.++.
T Consensus 352 Nv------reL~~~i~~~~~ 365 (444)
T PRK15115 352 NV------RQLVNVIEQCVA 365 (444)
T ss_pred hH------HHHHHHHHHHHH
Confidence 22 445555666554
No 476
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.61 E-value=3.9e-07 Score=97.23 Aligned_cols=155 Identities=17% Similarity=0.311 Sum_probs=97.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
++||+||+|||||.+++.+-+.+.........++++..+....+...+...-. ...++.+ . -......|+|||++
T Consensus 35 pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~---k~~~~~~-g-P~~~k~lv~fiDDl 109 (272)
T PF12775_consen 35 PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLE---KRRGRVY-G-PPGGKKLVLFIDDL 109 (272)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTEC---ECTTEEE-E-EESSSEEEEEEETT
T ss_pred cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEE---cCCCCCC-C-CCCCcEEEEEeccc
Confidence 79999999999999998766555333323556777776665544444322110 0001000 0 02234579999999
Q ss_pred cccCH------HHHHHHHHHhhcceeecCCC-eEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhH
Q psy14504 552 EKANS------DVFNILLQILDDGRLTDNRG-RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF 624 (951)
Q Consensus 552 d~~~~------~~~~~Ll~~le~g~~~~~~g-~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l 624 (951)
....+ ...+.|.++++.|-+.|... .-....++.+|++.|.+.. +..+++-|
T Consensus 110 N~p~~d~ygtq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~G---------------------r~~is~R~ 168 (272)
T PF12775_consen 110 NMPQPDKYGTQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGG---------------------RNPISPRF 168 (272)
T ss_dssp T-S---TTS--HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT-----------------------SHHHHH
T ss_pred CCCCCCCCCCcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCC---------------------CCCCChHH
Confidence 65543 46788999999888887543 3456688999998885332 12356778
Q ss_pred hhccCcEEEecCCChhhHHHHHHHHHHHH
Q psy14504 625 INRIDDIIVFRYLNRKNILSIANIQLNIL 653 (951)
Q Consensus 625 ~~R~~~~i~f~~l~~~~~~~i~~~~l~~~ 653 (951)
++.| .++.+++++.+.+..|....+...
T Consensus 169 ~r~f-~i~~~~~p~~~sl~~If~~il~~~ 196 (272)
T PF12775_consen 169 LRHF-NILNIPYPSDESLNTIFSSILQSH 196 (272)
T ss_dssp HTTE-EEEE----TCCHHHHHHHHHHHHH
T ss_pred hhhe-EEEEecCCChHHHHHHHHHHHhhh
Confidence 8888 699999999999999988877654
No 477
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.61 E-value=3.3e-07 Score=99.40 Aligned_cols=109 Identities=23% Similarity=0.256 Sum_probs=72.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||+|||||+||.+||+.+...+.++..+.++++......+ ++. .........+. ...+|+|||+
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~--~~~-------~~~~~~l~~l~--~~dlLiIDDi 226 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNS--ISD-------GSVKEKIDAVK--EAPVLMLDDI 226 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHH--Hhc-------CcHHHHHHHhc--CCCEEEEecC
Confidence 699999999999999999999998778888888888776542211 111 00011222333 3469999999
Q ss_pred c--ccCHHHHHHHHH-HhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhc
Q psy14504 552 E--KANSDVFNILLQ-ILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEME 601 (951)
Q Consensus 552 d--~~~~~~~~~Ll~-~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~ 601 (951)
. .+++.+.+.++. +++.. ...+.-.|+|||...+.+.+.+
T Consensus 227 G~e~~s~~~~~~ll~~Il~~R----------~~~~~~ti~TSNl~~~el~~~~ 269 (306)
T PRK08939 227 GAEQMSSWVRDEVLGVILQYR----------MQEELPTFFTSNFDFDELEHHL 269 (306)
T ss_pred CCccccHHHHHHHHHHHHHHH----------HHCCCeEEEECCCCHHHHHHHH
Confidence 5 456666654544 44531 1134458899999988876654
No 478
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.59 E-value=8.8e-07 Score=94.34 Aligned_cols=147 Identities=15% Similarity=0.163 Sum_probs=100.0
Q ss_pred ccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCC--------------CcCCCeEEEEehhhhh
Q psy14504 48 GRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPN--------------SLLSKKILLLDIALLL 112 (951)
Q Consensus 48 G~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~--------------~~~~~~~~~~~~~~l~ 112 (951)
.|...++.+...+..++..| .||+|| +||+++|+.+|+.+.+.+... .....+++.+....
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~-- 81 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQG-- 81 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCC--
Confidence 35677888888888777666 488896 689999999999987643110 11122333332210
Q ss_pred cCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHH
Q psy14504 113 AGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQ 187 (951)
Q Consensus 113 ~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~ 187 (951)
. .-....++.+...+.. .++..|++||++|.|. ..+.|.|+..+|. ..+++|.+|+.++
T Consensus 82 ---~--~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~--------~~AaNaLLKtLEEPp~~t~~iL~t~~~~--- 145 (290)
T PRK07276 82 ---Q--VIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMH--------VNAANSLLKVIEEPQSEIYIFLLTNDEN--- 145 (290)
T ss_pred ---C--cCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcC--------HHHHHHHHHHhcCCCCCeEEEEEECChh---
Confidence 0 0112356666655542 2335699999999994 3788999999985 3578888888887
Q ss_pred hhhcCHHHhhcceEEEeeCCCHHHHHHHHH
Q psy14504 188 YIEKDAAFERRFQKILVEEPDIEETISILR 217 (951)
Q Consensus 188 ~~~~~~~l~~Rf~~i~~~~p~~~er~~il~ 217 (951)
.+-|.++|||..|.|+. +.++..+++.
T Consensus 146 --~lLpTI~SRcq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 146 --KVLPTIKSRTQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred --hCchHHHHcceeeeCCC-cHHHHHHHHH
Confidence 89999999999999966 5555555553
No 479
>KOG2227|consensus
Probab=98.58 E-value=3.1e-07 Score=99.81 Aligned_cols=218 Identities=15% Similarity=0.193 Sum_probs=136.7
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhc--cCCCceEEeccccccchhch-h
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIF--NNEESIIRIDMSEFIEKHSI-S 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~--~~~~~~~~~~~~~~~~~~~~-~ 516 (951)
..+.|.+.-+..+..++..+-.+ ...+++.+.|-||||||.+...+-..+. ......++++|..+....++ .
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~-----~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL-----NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc-----ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 56778888888888888765433 1223799999999999988775544442 22234588899887665333 1
Q ss_pred cccCCC-CCCcccccc----chhHHHHHh-CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEec
Q psy14504 517 RLIGAP-PGYIGYEEG----GYLTEIVRR-KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 590 (951)
Q Consensus 517 ~l~g~~-~~~~g~~~~----~~l~~~~~~-~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 590 (951)
.+++.- ...+|...+ ..+...... ...=|+++||+|.+...-+..|+.+++--. .+.++.++|..+
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~--------lp~sr~iLiGiA 296 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPK--------LPNSRIILIGIA 296 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhccc--------CCcceeeeeeeh
Confidence 222211 011121122 222222322 336789999999999888888888887421 244566777777
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhcc---CcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccc
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI---DDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 667 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~---~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~ 667 (951)
|.-. +..+|-|-|..|+ +.++.|+||+.++|.+|+...+.... ...+-
T Consensus 297 NslD---------------------lTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~--------t~~~~ 347 (529)
T KOG2227|consen 297 NSLD---------------------LTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES--------TSIFL 347 (529)
T ss_pred hhhh---------------------HHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc--------ccccc
Confidence 7411 2334445555544 35899999999999999666654422 13344
Q ss_pred hHHHHHHHHhcccccccccccccchHHHHHHHHhh
Q psy14504 668 KAALKKISNIGFDLIYGARDVHGCKKSLSILLKKI 702 (951)
Q Consensus 668 ~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~ 702 (951)
+.++++++++.... -||+...++-+.+.++-+
T Consensus 348 ~~Aie~~ArKvaa~---SGDlRkaLdv~R~aiEI~ 379 (529)
T KOG2227|consen 348 NAAIELCARKVAAP---SGDLRKALDVCRRAIEIA 379 (529)
T ss_pred hHHHHHHHHHhccC---chhHHHHHHHHHHHHHHH
Confidence 47888888876544 477777777777666533
No 480
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=98.54 E-value=3.9e-07 Score=89.60 Aligned_cols=61 Identities=21% Similarity=0.183 Sum_probs=48.0
Q ss_pred ccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHH
Q psy14504 683 YGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIH 748 (951)
Q Consensus 683 ~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~ 748 (951)
.-++|+|+....++.+++.+...+..|.++++||++ +.++++++.++...+.+|+||||..
T Consensus 4 ~viSD~H~~~~~~~~~~~~~~~~~~~d~ii~~GD~~-----~~~~~~~l~~~~~~~~~V~GN~D~~ 64 (158)
T TIGR00040 4 LVISDTHGPLRATELPVELFNLESNVDLVIHAGDLT-----SPFVLKEFEDLAAKVIAVRGNNDGE 64 (158)
T ss_pred EEEecccCCcchhHhHHHHHhhccCCCEEEEcCCCC-----CHHHHHHHHHhCCceEEEccCCCch
Confidence 457899999877777777666544678999999998 3568888877655689999999974
No 481
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.53 E-value=1.3e-06 Score=102.09 Aligned_cols=181 Identities=13% Similarity=0.154 Sum_probs=113.3
Q ss_pred CCCCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC-----
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG----- 114 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~----- 114 (951)
.+..++|....+..+...+. .....++++.|++||||+++|+++...... .+.+++.++|..+...
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~-------~~~~~~~i~c~~~~~~~~~~~ 213 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAKIALSQASVLISGESGTGKELIARAIHYNSRR-------AKGPFIKVNCAALPESLLESE 213 (457)
T ss_pred cccceecccHHHhHHHHHHHHHcCCCcEEEEEcCCCccHHHHHHHHHHhCCC-------CCCCeEEEECCCCCHHHHHHH
Confidence 34568888887777776544 345578999999999999999999875422 2567888888655210
Q ss_pred ---c---cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEE
Q psy14504 115 ---T---KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELH 175 (951)
Q Consensus 115 ---~---~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~ 175 (951)
. .+.|.... ....+.. ..+.+|||||++.|.. ..+..|..+++.+ .++
T Consensus 214 lfg~~~~~~~~~~~~-~~g~~~~----a~~gtl~ld~i~~l~~--------~~q~~L~~~l~~~~~~~~~~~~~~~~~~r 280 (457)
T PRK11361 214 LFGHEKGAFTGAQTL-RQGLFER----ANEGTLLLDEIGEMPL--------VLQAKLLRILQEREFERIGGHQTIKVDIR 280 (457)
T ss_pred hcCCCCCCCCCCCCC-CCCceEE----CCCCEEEEechhhCCH--------HHHHHHHHHHhcCcEEeCCCCceeeeceE
Confidence 0 00010000 0011111 2245899999999954 5666777777543 378
Q ss_pred EEEeecchHHH--HhhhcCHHHhhcceEEEeeCCCHHHHHH----HHHHHHHhhhhhcC---CCCChHHHHHHHHH
Q psy14504 176 CIGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEETIS----ILRGLQKKYEVHHG---VEITDPAIVAASEL 242 (951)
Q Consensus 176 vI~at~~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~er~~----il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 242 (951)
+|++|+.+.-. ..-...+.+..|+..+.+..|+..+|.. +++.++.++....+ ..+++++++.+...
T Consensus 281 ii~~t~~~l~~~~~~g~~~~~l~~~l~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 356 (457)
T PRK11361 281 IIAATNRDLQAMVKEGTFREDLFYRLNVIHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAW 356 (457)
T ss_pred EEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcC
Confidence 99999865311 1113455677788777777777777653 44556655544322 46888888776654
No 482
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.52 E-value=1.2e-06 Score=102.40 Aligned_cols=200 Identities=13% Similarity=0.101 Sum_probs=117.4
Q ss_pred HHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCC----CCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 433 NIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAK----RPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 433 ~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~----~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
.+.+.+--.+.|.+.+++++.-.+--.-. ...+. +.--|+||+|.||||||.|-+.+++.+.+ .-+++..++.
T Consensus 279 ~l~~SiaPsIyG~e~VKkAilLqLfgGv~-k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr--~vytsgkgss 355 (682)
T COG1241 279 ILIKSIAPSIYGHEDVKKAILLQLFGGVK-KNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPR--GVYTSGKGSS 355 (682)
T ss_pred HHHHHhcccccCcHHHHHHHHHHhcCCCc-ccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCc--eEEEcccccc
Confidence 34455667788999988888777642211 11121 22348999999999999999999988721 1222222221
Q ss_pred ccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCC-CeEee-cCCeEE
Q psy14504 509 FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTIN-FRNTII 586 (951)
Q Consensus 509 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~~-~~~~ii 586 (951)
-..-... ..-. + ..|. -..-.+++-.+.+||+.|||+|+++....++|...||...++... |.... ...|-+
T Consensus 356 ~~GLTAa--v~rd-~-~tge--~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsv 429 (682)
T COG1241 356 AAGLTAA--VVRD-K-VTGE--WVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSV 429 (682)
T ss_pred ccCceeE--EEEc-c-CCCe--EEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhh
Confidence 1110000 0000 0 0110 001112344567899999999999999999999999998888665 42222 366778
Q ss_pred EEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecC-CChhhHHHHHHHHHHH
Q psy14504 587 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRY-LNRKNILSIANIQLNI 652 (951)
Q Consensus 587 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~-l~~~~~~~i~~~~l~~ 652 (951)
++++|.......... +. .+ .=.|+++|++|||.++.... ++++.=..++.+.+..
T Consensus 430 LAAaNP~~Gryd~~~--~~-------~e--nI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~ 485 (682)
T COG1241 430 LAAANPKFGRYDPKK--TV-------AE--NINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDK 485 (682)
T ss_pred hhhhCCCCCcCCCCC--CH-------HH--hcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHH
Confidence 888886443211100 00 00 12578999999997555544 5555445555555443
No 483
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.50 E-value=2.8e-06 Score=99.51 Aligned_cols=200 Identities=18% Similarity=0.211 Sum_probs=119.2
Q ss_pred CCCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC------
Q psy14504 43 LDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG------ 114 (951)
Q Consensus 43 l~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~------ 114 (951)
...++|....+..+...+. .....++++.|++||||+++|+++...... .+.+++.++|..+...
T Consensus 133 ~~~lig~s~~~~~v~~~i~~~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~-------~~~~~~~~~c~~~~~~~~~~~l 205 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGRLSRSDITVLINGESGTGKELVARALHRHSPR-------ANGPFIALNMAAIPKDLIESEL 205 (463)
T ss_pred ccceeecCHHHHHHHHHHHHHhCcCCeEEEECCCCCCHHHHHHHHHHhCCC-------CCCCeEEEeCCCCCHHHHHHHh
Confidence 3468898887777766554 344567899999999999999999886422 1567888888665210
Q ss_pred -ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEEEEee
Q psy14504 115 -TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGAT 180 (951)
Q Consensus 115 -~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~vI~at 180 (951)
+...|.+............ ...+..|||||++.|.. +.+..|..+++.+ .+++|++|
T Consensus 206 fg~~~~~~~~~~~~~~g~~~-~a~~gtl~l~ei~~l~~--------~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~ 276 (463)
T TIGR01818 206 FGHEKGAFTGANTRRQGRFE-QADGGTLFLDEIGDMPL--------DAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAAT 276 (463)
T ss_pred cCCCCCCCCCcccCCCCcEE-ECCCCeEEEEchhhCCH--------HHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeC
Confidence 0000000000000000011 12245899999999843 5666777777643 46788888
Q ss_pred cchHHH--HhhhcCHHHhhcceEEEeeCCCH----HHHHHHHHHHHHhhhhhcC---CCCChHHHHHHHHHhhhhcccCC
Q psy14504 181 TLNEYR--QYIEKDAAFERRFQKILVEEPDI----EETISILRGLQKKYEVHHG---VEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 181 ~~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~----~er~~il~~~~~~~~~~~~---~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
+.+.-. ..-...+.|..|+..+.+..|+. ++...+++.++.++....+ ..+++++++.+... .
T Consensus 277 ~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~--------~ 348 (463)
T TIGR01818 277 HQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQL--------R 348 (463)
T ss_pred CCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC--------C
Confidence 765311 11123457777887555555544 4555666666666554443 46889988877665 2
Q ss_pred Cc---hhHHHHHHHHHHH
Q psy14504 252 MP---DKAIDLIDEAAAK 266 (951)
Q Consensus 252 ~p---~~a~~ll~~a~~~ 266 (951)
+| +...++++.++..
T Consensus 349 wpgNvreL~~~~~~~~~~ 366 (463)
T TIGR01818 349 WPGNVRQLENLCRWLTVM 366 (463)
T ss_pred CCChHHHHHHHHHHHHHh
Confidence 34 4445555555543
No 484
>KOG2227|consensus
Probab=98.49 E-value=8.6e-06 Score=88.90 Aligned_cols=193 Identities=15% Similarity=0.189 Sum_probs=117.0
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHH----cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 107 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~----~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 107 (951)
..|..-++| ..++|++.++..+..++. .++.+++.+.|-||||||.+..-+-..+.... .....+.++
T Consensus 141 ~~l~~t~~p---~~l~gRe~e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~-----~~~~~v~in 212 (529)
T KOG2227|consen 141 ESLLNTAPP---GTLKGRELEMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSS-----KSPVTVYIN 212 (529)
T ss_pred HHHHhcCCC---CCccchHHHHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhc-----ccceeEEEe
Confidence 334444555 457899999888877664 57788999999999999998886666553321 122345555
Q ss_pred hhhhhcCc--------------cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHh--hhhhhccC
Q psy14504 108 IALLLAGT--------------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGN--MLKPELSR 171 (951)
Q Consensus 108 ~~~l~~~~--------------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~--~L~~~le~ 171 (951)
+..+...+ ...|...+-+..+-........+.|+++||+|.|.... +.+.- ...+.+-.
T Consensus 213 c~sl~~~~aiF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~-----~~vLy~lFewp~lp~ 287 (529)
T KOG2227|consen 213 CTSLTEASAIFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS-----QTVLYTLFEWPKLPN 287 (529)
T ss_pred eccccchHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc-----cceeeeehhcccCCc
Confidence 54321100 01122222223333334434457899999999997432 22111 22334456
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcce----EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHH
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQ----KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASEL 242 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~----~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~ 242 (951)
.++++||.+|..++.. ..-|.|..|+. .+.|++++.++..+||+.-+...+ -..+-+.+++.+++-
T Consensus 288 sr~iLiGiANslDlTd--R~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~---t~~~~~~Aie~~ArK 357 (529)
T KOG2227|consen 288 SRIILIGIANSLDLTD--RFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEES---TSIFLNAAIELCARK 357 (529)
T ss_pred ceeeeeeehhhhhHHH--HHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhccc---ccccchHHHHHHHHH
Confidence 7899999999887532 33455555443 389999999999999987665432 233334455555543
No 485
>PRK06921 hypothetical protein; Provisional
Probab=98.49 E-value=1.8e-07 Score=99.54 Aligned_cols=104 Identities=17% Similarity=0.227 Sum_probs=67.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccC-CCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEcc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 550 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDE 550 (951)
+++|+||||||||+||.+||+.+... +..++++...++...... . + .........+ ....+|+|||
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~--~------~---~~~~~~~~~~--~~~dlLiIDD 185 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKD--D------F---DLLEAKLNRM--KKVEVLFIDD 185 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHH--H------H---HHHHHHHHHh--cCCCEEEEec
Confidence 69999999999999999999998765 667777776554332100 0 0 0000111222 2346999999
Q ss_pred ccc-------cCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhh
Q psy14504 551 IEK-------ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 598 (951)
Q Consensus 551 id~-------~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 598 (951)
++. .+...++.|+.+++... ..+.-+|+|||..+..+.
T Consensus 186 l~~~~~g~e~~t~~~~~~lf~iin~R~----------~~~k~tIitsn~~~~el~ 230 (266)
T PRK06921 186 LFKPVNGKPRATEWQIEQMYSVLNYRY----------LNHKPILISSELTIDELL 230 (266)
T ss_pred cccccCCCccCCHHHHHHHHHHHHHHH----------HCCCCEEEECCCCHHHHh
Confidence 943 55666778888887521 112336889999877653
No 486
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.49 E-value=5.6e-06 Score=85.80 Aligned_cols=125 Identities=11% Similarity=0.032 Sum_probs=85.8
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCC------------CcCCCeEEEEehhhhhcCccccccHHHHHHHHHH
Q psy14504 63 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPN------------SLLSKKILLLDIALLLAGTKYRGEFEDRLKKILK 130 (951)
Q Consensus 63 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~------------~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~ 130 (951)
..+...||+||+|+||..+|.++|+.+.+..... .....+++.+.... . .-....++.+.+
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~-----~--~I~id~ir~l~~ 77 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQK-----N--PIKKEDALSIIN 77 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCc-----c--cCCHHHHHHHHH
Confidence 3456689999999999999999999987643110 11122233222111 0 111234555555
Q ss_pred HHHh----cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHhhhcCHHHhhcceEEEe
Q psy14504 131 EISN----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILV 204 (951)
Q Consensus 131 ~a~~----~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~ 204 (951)
.+.. .++..|++|+++|.|. ..++|.|+..+|. ..+++|.+|+.++ .+.|.++|||..+.|
T Consensus 78 ~l~~~s~e~~~~KV~II~~ae~m~--------~~AaNaLLK~LEEPp~~t~fiLit~~~~-----~lLpTI~SRCq~~~~ 144 (261)
T PRK05818 78 KLNRPSVESNGKKIYIIYGIEKLN--------KQSANSLLKLIEEPPKNTYGIFTTRNEN-----NILNTILSRCVQYVV 144 (261)
T ss_pred HHccCchhcCCCEEEEeccHhhhC--------HHHHHHHHHhhcCCCCCeEEEEEECChH-----hCchHhhhheeeeec
Confidence 4431 2345799999999994 4788999999985 5688888888887 899999999999888
Q ss_pred eCC
Q psy14504 205 EEP 207 (951)
Q Consensus 205 ~~p 207 (951)
+.+
T Consensus 145 ~~~ 147 (261)
T PRK05818 145 LSK 147 (261)
T ss_pred CCh
Confidence 777
No 487
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.45 E-value=1.9e-07 Score=102.96 Aligned_cols=198 Identities=14% Similarity=0.176 Sum_probs=100.7
Q ss_pred HHHhhccCCChHHHHHHHHHHHHhhhcCCCCC----CCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14504 435 ENLLCKRVVGQDEAISAVSNAIRRSRSGLSDA----KRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510 (951)
Q Consensus 435 ~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~----~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 510 (951)
.+.+--.+.|.+.++..+.-.+-..... ..+ .+...|+||+|.||||||.+.+.+++.. . .-++..+..-.
T Consensus 19 ~~s~aP~i~g~~~iK~aill~L~~~~~~-~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~---p-r~v~~~g~~~s 93 (331)
T PF00493_consen 19 ANSIAPSIYGHEDIKKAILLQLFGGVEK-NDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLA---P-RSVYTSGKGSS 93 (331)
T ss_dssp HHHCSSTTTT-HHHHHHHCCCCTT--SC-CCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT----S-SEEEEECCGST
T ss_pred HHHhCCcCcCcHHHHHHHHHHHHhcccc-ccccccccccccceeeccchhhhHHHHHHHHHhhC---C-ceEEECCCCcc
Confidence 3445567888888776665544321111 111 1233489999999999999999776554 1 22233322211
Q ss_pred chhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCC-CeEee-cCCeEEEE
Q psy14504 511 EKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTIN-FRNTIIVM 588 (951)
Q Consensus 511 ~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~~-~~~~iiI~ 588 (951)
...-.... ...+ ..| +-..-.+.+-.+.++|++|||+|++.....+.|++.||.+.++... |.... ..++.|++
T Consensus 94 ~~gLta~~-~~d~-~~~--~~~leaGalvlad~GiccIDe~dk~~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svla 169 (331)
T PF00493_consen 94 AAGLTASV-SRDP-VTG--EWVLEAGALVLADGGICCIDEFDKMKEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLA 169 (331)
T ss_dssp CCCCCEEE-CCCG-GTS--SECEEE-HHHHCTTSEEEECTTTT--CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEE
T ss_pred cCCcccee-cccc-ccc--eeEEeCCchhcccCceeeecccccccchHHHHHHHHHHcCeeccchhhhcccccchhhhHH
Confidence 10000000 0000 000 0011124555667899999999999999999999999999998766 43333 36788999
Q ss_pred ecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEe-cCCChhhHHHHHHHHHHH
Q psy14504 589 TSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVF-RYLNRKNILSIANIQLNI 652 (951)
Q Consensus 589 ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f-~~l~~~~~~~i~~~~l~~ 652 (951)
++|.....+.... .+.+ .-.++++|++|||.++.+ .+.+++.=..+....+..
T Consensus 170 a~NP~~g~~~~~~---------~~~~--ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 170 AANPKFGRYDPNK---------SLSE--NINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp EE--TT--S-TTS----------CGC--CT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred HHhhhhhhcchhh---------hhHH--hcccchhhHhhcCEEEEeccccccccccccceEEEec
Confidence 9996543221100 0000 113788999999977654 556655445555544443
No 488
>PHA00729 NTP-binding motif containing protein
Probab=98.45 E-value=9.7e-07 Score=89.80 Aligned_cols=125 Identities=13% Similarity=0.182 Sum_probs=73.3
Q ss_pred HHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCC------CCcCCCeEEEEehhhhhcCccccccHHHHHHHHH
Q psy14504 56 AIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVP------NSLLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 129 (951)
Q Consensus 56 l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~------~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~ 129 (951)
+...+......+++|+|+|||||||+|.++++.+.....+ ....+...+.++...+. ..++..+
T Consensus 8 ~~~~l~~~~f~nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fid~~~Ll----------~~L~~a~ 77 (226)
T PHA00729 8 IVSAYNNNGFVSAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFFELPDAL----------EKIQDAI 77 (226)
T ss_pred HHHHHhcCCeEEEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEEEHHHHH----------HHHHHHH
Confidence 4444455566799999999999999999999987311000 00011223333333222 1233222
Q ss_pred HHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCH
Q psy14504 130 KEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDI 209 (951)
Q Consensus 130 ~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~ 209 (951)
... ...-+|+|||+..-.... . .- .+ .+..++.+.+++++|+..+.|..+++
T Consensus 78 ~~~---~~~dlLIIDd~G~~~~~~------~---wh---~~-------------~~~~yf~L~~aLrSR~~l~il~~ls~ 129 (226)
T PHA00729 78 DND---YRIPLIIFDDAGIWLSKY------V---WY---ED-------------YMKTFYKIYALIRTRVSAVIFTTPSP 129 (226)
T ss_pred hcC---CCCCEEEEeCCchhhccc------c---hh---hh-------------ccchHHHHHHHHHhhCcEEEEecCCH
Confidence 211 112379999986543211 0 00 00 01224577889999999999999999
Q ss_pred HHHHHHHHH
Q psy14504 210 EETISILRG 218 (951)
Q Consensus 210 ~er~~il~~ 218 (951)
++....|+.
T Consensus 130 edL~~~Lr~ 138 (226)
T PHA00729 130 EDLAFYLRE 138 (226)
T ss_pred HHHHHHHHh
Confidence 999988864
No 489
>PF13173 AAA_14: AAA domain
Probab=98.44 E-value=1.1e-06 Score=83.10 Aligned_cols=121 Identities=25% Similarity=0.312 Sum_probs=79.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHH-Hh--CCCeEEEE
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV-RR--KPYSLILL 548 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~-~~--~~~~vl~i 548 (951)
.++++||.|||||++++.+++.+. ....++.+++.+........ .. +...+ +. ....+|||
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~-~~~~~~yi~~~~~~~~~~~~--------------~~-~~~~~~~~~~~~~~~i~i 67 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLL-PPENILYINFDDPRDRRLAD--------------PD-LLEYFLELIKPGKKYIFI 67 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc-ccccceeeccCCHHHHHHhh--------------hh-hHHHHHHhhccCCcEEEE
Confidence 589999999999999999998875 34678888887654421100 00 11111 11 25689999
Q ss_pred ccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhcc
Q psy14504 549 DEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI 628 (951)
Q Consensus 549 DEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~ 628 (951)
|||+.++ +....+-.+.+++ .+..||+|+...... .......+.+|.
T Consensus 68 DEiq~~~-~~~~~lk~l~d~~------------~~~~ii~tgS~~~~l--------------------~~~~~~~l~gr~ 114 (128)
T PF13173_consen 68 DEIQYLP-DWEDALKFLVDNG------------PNIKIILTGSSSSLL--------------------SKDIAESLAGRV 114 (128)
T ss_pred ehhhhhc-cHHHHHHHHHHhc------------cCceEEEEccchHHH--------------------hhcccccCCCeE
Confidence 9999997 5666666676652 344566665542221 122345677888
Q ss_pred CcEEEecCCChhhH
Q psy14504 629 DDIIVFRYLNRKNI 642 (951)
Q Consensus 629 ~~~i~f~~l~~~~~ 642 (951)
..+...|++-.|+
T Consensus 115 -~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 115 -IEIELYPLSFREF 127 (128)
T ss_pred -EEEEECCCCHHHh
Confidence 5899999998775
No 490
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.43 E-value=8.9e-06 Score=94.07 Aligned_cols=217 Identities=16% Similarity=0.209 Sum_probs=111.4
Q ss_pred hHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEe-ccccccchh-chhcccCCC
Q psy14504 445 QDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI-DMSEFIEKH-SISRLIGAP 522 (951)
Q Consensus 445 q~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~-~~~~~~~~~-~~~~l~g~~ 522 (951)
+..-++.+..++.....+. .+...+||+||||||||+++++||+++ +..+..- +...+.... ......+..
T Consensus 24 hkkKv~eV~~wl~~~~~~~----~~~~iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~np~~~~~~~~~~~d~~s~~ 96 (519)
T PF03215_consen 24 HKKKVEEVRSWLEEMFSGS----SPKRILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWINPVSFRESDNQEDDFESDF 96 (519)
T ss_pred cHHHHHHHHHHHHHHhccC----CCcceEEEECCCCCCHHHHHHHHHHHh---CCeeEEecCCCCccccccccccccccc
Confidence 3344567777776544321 112258899999999999999999998 3222221 111110000 000000000
Q ss_pred ---CCCccccccchhHHH---------H------HhCCCeEEEEccccccC----HHHHHHHHHHhhcceeecCCCeEee
Q psy14504 523 ---PGYIGYEEGGYLTEI---------V------RRKPYSLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGRTIN 580 (951)
Q Consensus 523 ---~~~~g~~~~~~l~~~---------~------~~~~~~vl~iDEid~~~----~~~~~~Ll~~le~g~~~~~~g~~~~ 580 (951)
..|.+. ...+.++ + ......||+|||+-... ....+.|.+++..+..
T Consensus 97 ~~~~~f~sq--~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L~~~l~~~~~--------- 165 (519)
T PF03215_consen 97 NKFDEFLSQ--SDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREALRQYLRSSRC--------- 165 (519)
T ss_pred cccccccch--hhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHHHHHHHcCCC---------
Confidence 000000 0001111 0 11346799999985432 4566777777765221
Q ss_pred cCCeEEEEe--cCC-CchhhhhhccccHHHHHHHHHHHHHhccChhHhhccC-cEEEecCCChhhHHHHHHHHHHHHHHH
Q psy14504 581 FRNTIIVMT--SNL-GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNK 656 (951)
Q Consensus 581 ~~~~iiI~t--tn~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~-~~i~f~~l~~~~~~~i~~~~l~~~~~~ 656 (951)
..++||+| -.. +...... -.-.....|+++++.... .+|.|.|....-+.+.+.+.+..-...
T Consensus 166 -~PlV~iiSe~~~~~~~~~~~~------------~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~ 232 (519)
T PF03215_consen 166 -LPLVFIISETESLSGDNSYRS------------NSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARS 232 (519)
T ss_pred -CCEEEEEecccccCCCCcccc------------cchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhh
Confidence 15666666 111 1110000 000123357888887543 489999999998888877776653222
Q ss_pred HHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 657 LLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 657 ~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
.... ....-..++++.|+.. ..|||..+...|+-..
T Consensus 233 ~~~~-~~~p~~~~~l~~I~~~------s~GDIRsAIn~LQf~~ 268 (519)
T PF03215_consen 233 SSGK-NKVPDKQSVLDSIAES------SNGDIRSAINNLQFWC 268 (519)
T ss_pred hcCC-ccCCChHHHHHHHHHh------cCchHHHHHHHHHHHh
Confidence 2111 1111224568888773 2588888866665444
No 491
>KOG1514|consensus
Probab=98.42 E-value=5.9e-06 Score=94.31 Aligned_cols=222 Identities=19% Similarity=0.210 Sum_probs=131.6
Q ss_pred hHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHc-----CCCCCcEEEcCCCCcHHHHHHHHHHHHHc----CCCC
Q psy14504 25 GYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQR-----RSKNNPVLIGEPGVGKTAIVEGLAQRIIN----GEVP 95 (951)
Q Consensus 25 ~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~-----~~~~~iLL~GppGtGKTtla~~la~~l~~----~~~~ 95 (951)
..|+.+...|.--..|. .+-+++.+...+-.++.. ....-+.+.|-||||||.+++.+.+.|.. +.+|
T Consensus 380 S~l~~ara~Lhls~vp~---sLpcRe~E~~~I~~f~~~~i~~~~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p 456 (767)
T KOG1514|consen 380 SELSKARARLHLSAVPE---SLPCRENEFSEIEDFLRSFISDQGLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELP 456 (767)
T ss_pred hHHHHHHHHhHHhhccc---cccchhHHHHHHHHHHHhhcCCCCCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCC
Confidence 44555555554444554 355899888888777653 22235778899999999999999988763 3344
Q ss_pred CCcCCCeEEEEehhhhhcCc--------ccccc---HHHHHHHH---HHHHHhcCCCeEEEEecccccccCCCCCCchhH
Q psy14504 96 NSLLSKKILLLDIALLLAGT--------KYRGE---FEDRLKKI---LKEISNNQKDIIIFIDELHTMIGTGKVEGSIDA 161 (951)
Q Consensus 96 ~~~~~~~~~~~~~~~l~~~~--------~~~g~---~~~~l~~~---~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~ 161 (951)
...++++|.-.+.... .+.|+ +...+..+ |........++||+|||+|.|.... +++
T Consensus 457 ----~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~-----QdV 527 (767)
T KOG1514|consen 457 ----KFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRS-----QDV 527 (767)
T ss_pred ----CccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhccc-----HHH
Confidence 5556666653322100 01111 12222222 2222244567999999999998643 443
Q ss_pred -Hhhhh-hhccCCcEEEEEeecchHHHHhhhcCHHHhhcce--EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHH
Q psy14504 162 -GNMLK-PELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ--KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIV 237 (951)
Q Consensus 162 -~~~L~-~~le~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~--~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~ 237 (951)
.|.+. +.+++.+++||+.+|..++-.- .+.....+|++ +|.|.+++.+|..+|+..-++.. ..+..++++
T Consensus 528 lYn~fdWpt~~~sKLvvi~IaNTmdlPEr-~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~-----~~f~~~aie 601 (767)
T KOG1514|consen 528 LYNIFDWPTLKNSKLVVIAIANTMDLPER-LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGL-----DAFENKAIE 601 (767)
T ss_pred HHHHhcCCcCCCCceEEEEecccccCHHH-HhccchhhhccceeeecCCCCHHHHHHHHHHhhcch-----hhcchhHHH
Confidence 33332 3346778888888776442111 23445666776 49999999999999997666543 234566666
Q ss_pred HHHHHhhhhcccCCCchhHHHHHHHHHHHh
Q psy14504 238 AASELSYRYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 238 ~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
.+++....- .+-.+.|.++++.|..-+
T Consensus 602 lvarkVAav---SGDaRraldic~RA~Eia 628 (767)
T KOG1514|consen 602 LVARKVAAV---SGDARRALDICRRAAEIA 628 (767)
T ss_pred HHHHHHHhc---cccHHHHHHHHHHHHHHh
Confidence 555532221 122355666666665443
No 492
>PF05729 NACHT: NACHT domain
Probab=98.42 E-value=3.2e-06 Score=83.72 Aligned_cols=146 Identities=19% Similarity=0.272 Sum_probs=83.7
Q ss_pred cEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccc----------cccHHHHHHHHHHHHHhcCC
Q psy14504 68 PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKY----------RGEFEDRLKKILKEISNNQK 137 (951)
Q Consensus 68 iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~g~~~~~l~~~~~~a~~~~~ 137 (951)
++++|+||+|||++++.++..+.....+... ..-++.+.+......... ...........+..+.....
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAEEEPPPSK-FPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHhcCccccc-ceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 6889999999999999999988765433211 112223333332211100 00111111222233334566
Q ss_pred CeEEEEecccccccCCCCCCchhHHhhhhhhccC---CcEEEEEeecchHHHHhhhcCHHHhhcc---eEEEeeCCCHHH
Q psy14504 138 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---GELHCIGATTLNEYRQYIEKDAAFERRF---QKILVEEPDIEE 211 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~---~~i~vI~at~~~~~~~~~~~~~~l~~Rf---~~i~~~~p~~~e 211 (951)
+.+|+||.+|.+...............|..++.. ..+.+|.++.+..+. .+.+.+ ..+.+.+.+.++
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~-------~~~~~~~~~~~~~l~~~~~~~ 154 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFP-------DLRRRLKQAQILELEPFSEED 154 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHH-------HHHHhcCCCcEEEECCCCHHH
Confidence 8899999999997643221122333445555543 456777777765521 133433 358999999999
Q ss_pred HHHHHHHHHH
Q psy14504 212 TISILRGLQK 221 (951)
Q Consensus 212 r~~il~~~~~ 221 (951)
+.++++...+
T Consensus 155 ~~~~~~~~f~ 164 (166)
T PF05729_consen 155 IKQYLRKYFS 164 (166)
T ss_pred HHHHHHHHhh
Confidence 9999886654
No 493
>KOG0480|consensus
Probab=98.41 E-value=1.5e-06 Score=97.51 Aligned_cols=199 Identities=16% Similarity=0.182 Sum_probs=116.0
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHhhh---cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14504 430 KLLNIENLLCKRVVGQDEAISAVSNAIRRSR---SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 506 (951)
Q Consensus 430 ~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~---~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 506 (951)
...++-..|...|.|.+.++..|.-.+--.- .+-.-+-+.-.+++++|.|||||+.+-++.+..+-+ .-.++.+.
T Consensus 335 ly~~lv~Sl~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR--~vYtsGka 412 (764)
T KOG0480|consen 335 LYKNLVNSLFPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPR--SVYTSGKA 412 (764)
T ss_pred HHHHHHHhhCccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCc--ceEecCcc
Confidence 3556777888899999999988877763211 111122233348999999999999999999877621 11111111
Q ss_pred ccccchhchhcccCCCCCCccccccchh---HHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCC-CeEeec-
Q psy14504 507 SEFIEKHSISRLIGAPPGYIGYEEGGYL---TEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-GRTINF- 581 (951)
Q Consensus 507 ~~~~~~~~~~~l~g~~~~~~g~~~~~~l---~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~-g~~~~~- 581 (951)
+.- + |-...-+-.++.+.+ .+++--+.++|..|||+||++..-|-+|++.||...++... |.....
T Consensus 413 SSa------A---GLTaaVvkD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLn 483 (764)
T KOG0480|consen 413 SSA------A---GLTAAVVKDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLN 483 (764)
T ss_pred ccc------c---cceEEEEecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeec
Confidence 110 0 000001111111111 12334566899999999999999999999999987776654 333222
Q ss_pred CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCChhhHHHHHHHHH
Q psy14504 582 RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 582 ~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~~~~~~i~~~~l 650 (951)
.++.||+++|.-.....+ ...+.+.+ .+++++++|||- .|.+..+++..=..|..+.+
T Consensus 484 ARtSIlAAANPv~GhYdR---------~ktl~eNi--~msApimSRFDL~FiLlD~~nE~~D~~ia~hIl 542 (764)
T KOG0480|consen 484 ARTSILAAANPVGGHYDR---------KKTLRENI--NMSAPIMSRFDLFFILLDDCNEVVDYAIARHIL 542 (764)
T ss_pred chhhhhhhcCCcCCcccc---------ccchhhhc--CCCchhhhhhcEEEEEecCCchHHHHHHHHHHH
Confidence 345566777752221111 01111111 478999999997 45555566654444444433
No 494
>PRK08181 transposase; Validated
Probab=98.40 E-value=1.1e-06 Score=93.00 Aligned_cols=101 Identities=16% Similarity=0.239 Sum_probs=61.0
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEE
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 143 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~i 143 (951)
...|++|+||||||||+||.++|+.+... +..++.++...+...-. ...........+..+.. .-+|+|
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~-------g~~v~f~~~~~L~~~l~-~a~~~~~~~~~l~~l~~---~dLLII 173 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIEN-------GWRVLFTRTTDLVQKLQ-VARRELQLESAIAKLDK---FDLLIL 173 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHc-------CCceeeeeHHHHHHHHH-HHHhCCcHHHHHHHHhc---CCEEEE
Confidence 45789999999999999999999988543 56677777666542110 00001123344444442 339999
Q ss_pred ecccccccCCCCCCchhHHhhhhhhc----cCCcEEEEEeecch
Q psy14504 144 DELHTMIGTGKVEGSIDAGNMLKPEL----SRGELHCIGATTLN 183 (951)
Q Consensus 144 DEid~l~~~~~~~~~~~~~~~L~~~l----e~~~i~vI~at~~~ 183 (951)
||++.+... ......|..++ ++ -.+|.|||.+
T Consensus 174 DDlg~~~~~------~~~~~~Lf~lin~R~~~--~s~IiTSN~~ 209 (269)
T PRK08181 174 DDLAYVTKD------QAETSVLFELISARYER--RSILITANQP 209 (269)
T ss_pred eccccccCC------HHHHHHHHHHHHHHHhC--CCEEEEcCCC
Confidence 999876442 12233444444 33 2466666653
No 495
>KOG2680|consensus
Probab=98.39 E-value=1.4e-05 Score=81.96 Aligned_cols=116 Identities=23% Similarity=0.183 Sum_probs=79.8
Q ss_pred CeEEEEecccccccCCCCCCchhHHhhhhhhccCC-cEEEEEeecch-------HHHHhhhcCHHHhhcceEEEeeCCCH
Q psy14504 138 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-ELHCIGATTLN-------EYRQYIEKDAAFERRFQKILVEEPDI 209 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-~i~vI~at~~~-------~~~~~~~~~~~l~~Rf~~i~~~~p~~ 209 (951)
|.||||||+|.|- .+...+|...+++. .-++|.+||+- +|..-..++-.|+.|+-.|...+++.
T Consensus 289 pGVLFIDEvHMLD--------IEcFsFlNrAlE~d~~PiiimaTNrgit~iRGTn~~SphGiP~D~lDR~lII~t~py~~ 360 (454)
T KOG2680|consen 289 PGVLFIDEVHMLD--------IECFSFLNRALENDMAPIIIMATNRGITRIRGTNYRSPHGIPIDLLDRMLIISTQPYTE 360 (454)
T ss_pred cceEEEeeehhhh--------hHHHHHHHHHhhhccCcEEEEEcCCceEEeecCCCCCCCCCcHHHhhhhheeecccCcH
Confidence 6799999999982 35566777777653 23344444431 12223457788999998899999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhHHh
Q psy14504 210 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIE 270 (951)
Q Consensus 210 ~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~ 270 (951)
++...||+.-+. ..++.+++++++.+......-. -+.++.|+..+...+..+
T Consensus 361 ~d~~~IL~iRc~----EEdv~m~~~A~d~Lt~i~~~ts-----LRYai~Lit~a~~~~~kr 412 (454)
T KOG2680|consen 361 EDIKKILRIRCQ----EEDVEMNPDALDLLTKIGEATS-----LRYAIHLITAASLVCLKR 412 (454)
T ss_pred HHHHHHHHhhhh----hhccccCHHHHHHHHHhhhhhh-----HHHHHHHHHHHHHHHHHh
Confidence 999999987666 3578899999988887643311 255677776665544433
No 496
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.38 E-value=7.2e-06 Score=95.43 Aligned_cols=173 Identities=13% Similarity=0.202 Sum_probs=110.6
Q ss_pred CccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHH
Q psy14504 45 PVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE 122 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 122 (951)
.++|....+..+...+. .....+++++|++||||+++|+++...... .+.+++.++|+.+.. .
T Consensus 140 ~lig~s~~~~~~~~~i~~~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~-------~~~~~i~~~c~~~~~--~------ 204 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIALVAPSEATVLIHGDSGTGKELVARAIHASSAR-------SEKPLVTLNCAALNE--S------ 204 (441)
T ss_pred ceEecCHHHHHHHHHHhhccCCCCeEEEEecCCCCHHHHHHHHHHcCCC-------CCCCeeeeeCCCCCH--H------
Confidence 57788777766665433 345578999999999999999999876422 256888888865421 0
Q ss_pred HHHHH-HHHH---------------HHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------c
Q psy14504 123 DRLKK-ILKE---------------ISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------E 173 (951)
Q Consensus 123 ~~l~~-~~~~---------------a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~ 173 (951)
.+.. +|.. .. ...+++|||||++.|.+ ..+..|...++.+ .
T Consensus 205 -~~~~~lfg~~~~~~~~~~~~~~g~~~-~a~~gtl~ldei~~l~~--------~~q~~l~~~l~~~~~~~~~~~~~~~~~ 274 (441)
T PRK10365 205 -LLESELFGHEKGAFTGADKRREGRFV-EADGGTLFLDEIGDISP--------MMQVRLLRAIQEREVQRVGSNQTISVD 274 (441)
T ss_pred -HHHHHhcCCCCCCcCCCCcCCCCcee-ECCCCEEEEeccccCCH--------HHHHHHHHHHccCcEEeCCCCceeeec
Confidence 1111 1110 11 12356899999999954 5666777777654 3
Q ss_pred EEEEEeecchHHHH--hhhcCHHHhhcceEEEeeCCCHHHHH----HHHHHHHHhhhhhcC---CCCChHHHHHHHHH
Q psy14504 174 LHCIGATTLNEYRQ--YIEKDAAFERRFQKILVEEPDIEETI----SILRGLQKKYEVHHG---VEITDPAIVAASEL 242 (951)
Q Consensus 174 i~vI~at~~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~~er~----~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 242 (951)
+++|++|+.+.... .-...+.|..|+..+.+..|+..+|. .+++.++.++....+ ..++++++..+...
T Consensus 275 ~rii~~t~~~~~~~~~~~~~~~~l~~~l~~~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 352 (441)
T PRK10365 275 VRLIAATHRDLAAEVNAGRFRQDLYYRLNVVAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHY 352 (441)
T ss_pred eEEEEeCCCCHHHHHHcCCchHHHHHHhccceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 56888887764221 11244566667777777777777665 445566655443222 45888888877765
No 497
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.35 E-value=2.5e-06 Score=93.17 Aligned_cols=120 Identities=20% Similarity=0.304 Sum_probs=68.7
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCcc---ccccHHHHHHHHHHHHHhcCCCeE
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTK---YRGEFEDRLKKILKEISNNQKDII 140 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~g~~~~~l~~~~~~a~~~~~~~i 140 (951)
...+++|+||+|||||+||.++|+++... +..++.++...+..... +.... .....+..+.... +
T Consensus 182 ~~~~Lll~G~~GtGKThLa~aIa~~l~~~-------g~~V~y~t~~~l~~~l~~~~~~~~~--~~~~~~~~l~~~D---L 249 (329)
T PRK06835 182 NNENLLFYGNTGTGKTFLSNCIAKELLDR-------GKSVIYRTADELIEILREIRFNNDK--ELEEVYDLLINCD---L 249 (329)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHC-------CCeEEEEEHHHHHHHHHHHHhccch--hHHHHHHHhccCC---E
Confidence 34899999999999999999999998653 56777777766542110 00100 1111244444333 8
Q ss_pred EEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecch--HHHHhhhcCHHHhhcce
Q psy14504 141 IFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN--EYRQYIEKDAAFERRFQ 200 (951)
Q Consensus 141 L~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~--~~~~~~~~~~~l~~Rf~ 200 (951)
|+|||+....... .....+.+.+...+.++. .+|.|||.. ++.. ..++.+.+|+.
T Consensus 250 LIIDDlG~e~~t~--~~~~~Lf~iin~R~~~~k-~tIiTSNl~~~el~~--~~~eri~SRL~ 306 (329)
T PRK06835 250 LIIDDLGTEKITE--FSKSELFNLINKRLLRQK-KMIISTNLSLEELLK--TYSERISSRLL 306 (329)
T ss_pred EEEeccCCCCCCH--HHHHHHHHHHHHHHHCCC-CEEEECCCCHHHHHH--HHhHHHHHHHH
Confidence 9999998763321 111122333333334443 455566643 2222 24678888874
No 498
>KOG1051|consensus
Probab=98.35 E-value=2e-06 Score=102.83 Aligned_cols=121 Identities=22% Similarity=0.391 Sum_probs=89.3
Q ss_pred CccccHHHHHHHHHHHHcC--------CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh------
Q psy14504 45 PVIGRDDEIRRAIQVLQRR--------SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL------ 110 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~~--------~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~------ 110 (951)
.++||++.+..+...+.+. ....++|.||.|||||-+|+++|..+... ...++.+|++.
T Consensus 563 ~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgs-------e~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 563 RVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGS-------EENFIRLDMSEFQEVSK 635 (898)
T ss_pred hccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCC-------ccceEEechhhhhhhhh
Confidence 5889999999988877632 23347899999999999999999998554 55788889885
Q ss_pred hh-cCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEE
Q psy14504 111 LL-AGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHC 176 (951)
Q Consensus 111 l~-~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~v 176 (951)
++ +...|+|..+ ...+.+.++ ....+|++||||+.-- .++++.|++++++| .++|
T Consensus 636 ligsp~gyvG~e~--gg~Lteavr-rrP~sVVLfdeIEkAh--------~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~ 704 (898)
T KOG1051|consen 636 LIGSPPGYVGKEE--GGQLTEAVK-RRPYSVVLFEEIEKAH--------PDVLNILLQLLDRGRLTDSHGREVDFKNAIF 704 (898)
T ss_pred ccCCCcccccchh--HHHHHHHHh-cCCceEEEEechhhcC--------HHHHHHHHHHHhcCccccCCCcEeeccceEE
Confidence 22 2234666655 335555555 5567899999999762 47888999999765 3677
Q ss_pred EEeecch
Q psy14504 177 IGATTLN 183 (951)
Q Consensus 177 I~at~~~ 183 (951)
|.|+|..
T Consensus 705 IMTsn~~ 711 (898)
T KOG1051|consen 705 IMTSNVG 711 (898)
T ss_pred EEecccc
Confidence 8887754
No 499
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.34 E-value=8.5e-06 Score=84.44 Aligned_cols=132 Identities=22% Similarity=0.313 Sum_probs=79.0
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEcccc
Q psy14504 473 FMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIE 552 (951)
Q Consensus 473 ~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid 552 (951)
-.+.||+|||||++.+.+|+.+ +..++.++|++-.+.....+ .+...+.. ++++.|||++
T Consensus 35 ~~~~GpagtGKtetik~La~~l---G~~~~vfnc~~~~~~~~l~r---------------il~G~~~~--GaW~cfdefn 94 (231)
T PF12774_consen 35 GALSGPAGTGKTETIKDLARAL---GRFVVVFNCSEQMDYQSLSR---------------ILKGLAQS--GAWLCFDEFN 94 (231)
T ss_dssp EEEESSTTSSHHHHHHHHHHCT---T--EEEEETTSSS-HHHHHH---------------HHHHHHHH--T-EEEEETCC
T ss_pred CCCcCCCCCCchhHHHHHHHHh---CCeEEEecccccccHHHHHH---------------HHHHHhhc--Cchhhhhhhh
Confidence 5689999999999999999999 88999999998766544443 24444443 5799999999
Q ss_pred ccCHHHHHHHHHHhhc---------ceeecCCCeEeec-CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccCh
Q psy14504 553 KANSDVFNILLQILDD---------GRLTDNRGRTINF-RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP 622 (951)
Q Consensus 553 ~~~~~~~~~Ll~~le~---------g~~~~~~g~~~~~-~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p 622 (951)
+++.+++..+.+.+.. ..+. -.|..+.. .++-+.+|.|.+... ...+++
T Consensus 95 rl~~~vLS~i~~~i~~i~~al~~~~~~~~-~~g~~i~l~~~~~iFiT~np~y~g--------------------r~~LP~ 153 (231)
T PF12774_consen 95 RLSEEVLSVISQQIQSIQDALRAKQKSFT-LEGQEIKLNPNCGIFITMNPGYAG--------------------RSELPE 153 (231)
T ss_dssp CSSHHHHHHHHHHHHHHHHHHHCTSSEEE-ETTCEEE--TT-EEEEEE-B-CCC--------------------C--S-H
T ss_pred hhhHHHHHHHHHHHHHHHHhhcccccccc-cCCCEEEEccceeEEEeeccccCC--------------------cccCCH
Confidence 9999887776555542 1222 12455544 345566677754321 123455
Q ss_pred hHhhccCcEEEecCCChhhHHHHH
Q psy14504 623 EFINRIDDIIVFRYLNRKNILSIA 646 (951)
Q Consensus 623 ~l~~R~~~~i~f~~l~~~~~~~i~ 646 (951)
.+..-| +.|.+..++...+.++.
T Consensus 154 nLk~lF-Rpvam~~PD~~~I~ei~ 176 (231)
T PF12774_consen 154 NLKALF-RPVAMMVPDLSLIAEIL 176 (231)
T ss_dssp HHCTTE-EEEE--S--HHHHHHHH
T ss_pred hHHHHh-heeEEeCCCHHHHHHHH
Confidence 555544 56777777776666653
No 500
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.34 E-value=8.7e-06 Score=76.41 Aligned_cols=144 Identities=20% Similarity=0.208 Sum_probs=80.1
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCC-------CCC-----cCCCeEEEEehhh------hhcC----cccc---
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRIINGEV-------PNS-----LLSKKILLLDIAL------LLAG----TKYR--- 118 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~-------~~~-----~~~~~~~~~~~~~------l~~~----~~~~--- 118 (951)
..-.+.++|+||+||||++.-++..|...+. |+. ..+..++.++... ...+ ++|.
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY~V~v 83 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKYGVNV 83 (179)
T ss_pred cceEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEeeeeecCCeEeeeEEEEccCCceEEEEEcCCCCcccceEEeeH
Confidence 3457899999999999999999999876421 111 1122222222100 0001 1111
Q ss_pred ccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHH---
Q psy14504 119 GEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAF--- 195 (951)
Q Consensus 119 g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l--- 195 (951)
...+......++.|.+.. -|++||||.-|--. +......+...|..++. +|++-.... .+|-+
T Consensus 84 ~~le~i~~~al~rA~~~a--DvIIIDEIGpMElk-----s~~f~~~ve~vl~~~kp-liatlHrrs------r~P~v~~i 149 (179)
T COG1618 84 EGLEEIAIPALRRALEEA--DVIIIDEIGPMELK-----SKKFREAVEEVLKSGKP-LIATLHRRS------RHPLVQRI 149 (179)
T ss_pred HHHHHHhHHHHHHHhhcC--CEEEEecccchhhc-----cHHHHHHHHHHhcCCCc-EEEEEeccc------CChHHHHh
Confidence 123334445555554332 28999999887321 24556667777776665 666665442 34433
Q ss_pred hhcceEEEeeCCCHHHHHHHHHHHHHhh
Q psy14504 196 ERRFQKILVEEPDIEETISILRGLQKKY 223 (951)
Q Consensus 196 ~~Rf~~i~~~~p~~~er~~il~~~~~~~ 223 (951)
++++..+.| .+++.|-.|+..++..+
T Consensus 150 k~~~~v~v~--lt~~NR~~i~~~Il~~L 175 (179)
T COG1618 150 KKLGGVYVF--LTPENRNRILNEILSVL 175 (179)
T ss_pred hhcCCEEEE--EccchhhHHHHHHHHHh
Confidence 335555443 55555667777766543
Done!