Query psy14504
Match_columns 951
No_of_seqs 673 out of 5577
Neff 9.0
Searched_HMMs 29240
Date Fri Aug 16 21:32:29 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14504.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14504hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1qvr_A CLPB protein; coiled co 100.0 4.2E-75 1.5E-79 722.5 63.0 700 12-727 138-839 (854)
2 3pxi_A Negative regulator of g 100.0 6E-66 2E-70 634.4 49.5 590 19-727 155-744 (758)
3 1r6b_X CLPA protein; AAA+, N-t 100.0 1.4E-64 4.8E-69 623.9 50.4 571 21-727 163-735 (758)
4 2dfj_A Diadenosinetetraphospha 100.0 1.4E-43 4.7E-48 378.3 22.7 263 682-950 3-268 (280)
5 3cf2_A TER ATPase, transitiona 100.0 2.6E-41 8.8E-46 403.9 28.2 417 40-650 200-661 (806)
6 3pxg_A Negative regulator of g 100.0 1.4E-33 4.7E-38 325.9 29.3 291 19-330 155-445 (468)
7 4fcw_A Chaperone protein CLPB; 100.0 1.2E-31 3.9E-36 295.3 25.4 294 426-727 3-298 (311)
8 1ypw_A Transitional endoplasmi 100.0 2.1E-32 7.2E-37 334.6 16.4 420 38-651 198-662 (806)
9 2qjc_A Diadenosine tetraphosph 99.9 6.3E-27 2.1E-31 248.5 12.8 212 681-950 20-246 (262)
10 4b4t_J 26S protease regulatory 99.9 9.5E-25 3.3E-29 239.9 24.7 202 39-268 143-370 (405)
11 4b4t_I 26S protease regulatory 99.9 3.3E-24 1.1E-28 235.7 23.2 203 39-269 177-405 (437)
12 4b4t_H 26S protease regulatory 99.9 1.2E-23 4E-28 233.7 25.0 201 40-268 205-431 (467)
13 3hws_A ATP-dependent CLP prote 99.9 5.8E-25 2E-29 246.7 13.7 255 432-704 7-324 (363)
14 4b4t_M 26S protease regulatory 99.9 4.6E-24 1.6E-28 238.6 20.0 202 39-268 176-403 (434)
15 4b4t_L 26S protease subunit RP 99.9 1.6E-23 5.6E-28 234.4 23.4 203 39-269 176-404 (437)
16 4b4t_K 26S protease regulatory 99.9 3.6E-23 1.2E-27 231.4 22.9 202 39-268 167-395 (428)
17 1g41_A Heat shock protein HSLU 99.9 3.8E-23 1.3E-27 231.5 20.5 142 542-707 250-412 (444)
18 1jbk_A CLPB protein; beta barr 99.9 3.1E-23 1.1E-27 210.4 17.0 193 24-216 2-194 (195)
19 2z72_A Protein-tyrosine-phosph 99.9 1.9E-23 6.3E-28 230.2 15.4 227 680-950 71-328 (342)
20 2p65_A Hypothetical protein PF 99.9 1.7E-22 5.9E-27 203.8 15.7 185 24-208 2-187 (187)
21 1um8_A ATP-dependent CLP prote 99.9 1.8E-22 6.2E-27 227.6 17.1 255 431-702 12-339 (376)
22 3eie_A Vacuolar protein sortin 99.9 1.4E-21 4.9E-26 215.0 21.4 207 34-267 8-235 (322)
23 2qp9_X Vacuolar protein sortin 99.9 2.4E-21 8.1E-26 215.7 22.6 217 25-268 32-269 (355)
24 1xwi_A SKD1 protein; VPS4B, AA 99.9 8.8E-21 3E-25 208.0 22.4 203 39-267 7-230 (322)
25 1ojl_A Transcriptional regulat 99.9 5E-21 1.7E-25 208.1 17.4 227 440-699 2-232 (304)
26 3d8b_A Fidgetin-like protein 1 99.9 1.8E-20 6.1E-25 209.0 22.3 213 26-265 66-300 (357)
27 1ofh_A ATP-dependent HSL prote 99.9 8E-21 2.7E-25 208.4 18.6 232 432-701 7-272 (310)
28 3vfd_A Spastin; ATPase, microt 99.9 8.6E-21 3E-25 214.5 19.1 206 32-264 103-330 (389)
29 3m6a_A ATP-dependent protease 99.8 1.6E-21 5.6E-26 228.5 11.9 254 406-701 48-314 (543)
30 3pvs_A Replication-associated 99.8 2.8E-20 9.6E-25 212.0 20.3 201 32-268 14-223 (447)
31 3b9p_A CG5977-PA, isoform A; A 99.8 5E-20 1.7E-24 200.7 21.1 213 27-266 4-239 (297)
32 2bjv_A PSP operon transcriptio 99.8 3.2E-20 1.1E-24 198.7 18.0 226 440-699 6-237 (265)
33 3cf2_A TER ATPase, transitiona 99.8 3.5E-21 1.2E-25 230.4 11.6 200 41-268 474-699 (806)
34 2zan_A Vacuolar protein sortin 99.8 2.6E-20 8.9E-25 213.4 17.3 211 31-267 121-352 (444)
35 2c9o_A RUVB-like 1; hexameric 99.8 3.8E-21 1.3E-25 221.7 7.8 170 32-217 24-236 (456)
36 3cf0_A Transitional endoplasmi 99.8 6.2E-20 2.1E-24 199.8 15.8 203 38-268 9-237 (301)
37 3h4m_A Proteasome-activating n 99.8 1.2E-18 4.2E-23 188.5 25.0 204 39-270 12-241 (285)
38 4b4t_J 26S protease regulatory 99.8 1.8E-19 6.2E-24 198.1 16.6 189 439-691 147-361 (405)
39 2ce7_A Cell division protein F 99.8 9.1E-19 3.1E-23 199.4 22.7 201 41-269 13-238 (476)
40 3hu3_A Transitional endoplasmi 99.8 4.2E-19 1.4E-23 204.2 20.1 206 36-269 196-424 (489)
41 2qz4_A Paraplegin; AAA+, SPG7, 99.8 6.2E-19 2.1E-23 188.3 19.9 202 40-268 2-230 (262)
42 1ny5_A Transcriptional regulat 99.8 3.7E-19 1.3E-23 200.1 18.4 226 441-699 138-367 (387)
43 1lv7_A FTSH; alpha/beta domain 99.8 4.7E-19 1.6E-23 188.6 17.6 208 34-270 2-235 (257)
44 3u61_B DNA polymerase accessor 99.8 3.5E-19 1.2E-23 196.6 16.9 198 30-264 12-220 (324)
45 3pfi_A Holliday junction ATP-d 99.8 1.2E-18 4.3E-23 193.4 20.5 197 28-268 13-235 (338)
46 1g5b_A Serine/threonine protei 99.8 1E-19 3.5E-24 188.8 10.6 195 680-943 13-219 (221)
47 3syl_A Protein CBBX; photosynt 99.8 9.4E-19 3.2E-23 191.8 18.0 210 45-267 32-262 (309)
48 3dzd_A Transcriptional regulat 99.8 8.8E-19 3E-23 195.2 17.9 225 441-699 130-358 (368)
49 3syl_A Protein CBBX; photosynt 99.8 1.2E-18 4.3E-23 190.8 17.3 209 430-691 21-254 (309)
50 4b4t_I 26S protease regulatory 99.8 5.3E-19 1.8E-23 194.5 13.8 188 439-691 181-395 (437)
51 4b4t_M 26S protease regulatory 99.8 1.2E-18 4E-23 195.0 13.1 188 439-691 180-394 (434)
52 4b4t_H 26S protease regulatory 99.8 4.2E-18 1.4E-22 189.3 16.9 188 440-691 209-422 (467)
53 1iqp_A RFCS; clamp loader, ext 99.8 1E-17 3.4E-22 185.1 20.0 208 26-265 7-217 (327)
54 2chg_A Replication factor C sm 99.8 2.1E-17 7.1E-22 171.5 21.0 199 32-266 5-210 (226)
55 4b4t_L 26S protease subunit RP 99.8 2.5E-18 8.7E-23 192.4 14.7 189 439-691 180-394 (437)
56 2chq_A Replication factor C sm 99.8 7.4E-18 2.5E-22 185.5 16.8 202 32-265 5-209 (319)
57 4b4t_K 26S protease regulatory 99.8 4.5E-18 1.5E-22 190.2 14.6 188 439-691 171-386 (428)
58 1fjm_A Protein serine/threonin 99.7 2.5E-18 8.6E-23 185.3 11.8 149 635-805 28-181 (330)
59 1sxj_D Activator 1 41 kDa subu 99.7 1E-17 3.5E-22 187.3 16.9 204 29-267 22-242 (353)
60 2r62_A Cell division protease 99.7 2.7E-19 9.1E-24 191.8 3.2 204 37-268 4-234 (268)
61 2x8a_A Nuclear valosin-contain 99.7 3.7E-17 1.3E-21 174.6 18.4 206 39-268 5-234 (274)
62 1sxj_B Activator 1 37 kDa subu 99.7 9.1E-17 3.1E-21 177.1 20.6 197 32-264 9-213 (323)
63 1sxj_E Activator 1 40 kDa subu 99.7 3E-17 1E-21 183.5 16.9 206 33-267 3-244 (354)
64 1sxj_A Activator 1 95 kDa subu 99.7 7.2E-18 2.5E-22 197.2 12.0 203 29-264 24-256 (516)
65 1jr3_A DNA polymerase III subu 99.7 1.9E-16 6.5E-21 178.3 22.4 204 32-266 4-227 (373)
66 1sxj_C Activator 1 40 kDa subu 99.7 1.3E-16 4.5E-21 177.0 19.7 198 31-264 12-216 (340)
67 1njg_A DNA polymerase III subu 99.7 2.9E-16 1E-20 165.2 21.4 204 32-266 11-234 (250)
68 3uk6_A RUVB-like 2; hexameric 99.7 2.3E-16 7.7E-21 177.4 21.6 208 32-270 31-313 (368)
69 3eie_A Vacuolar protein sortin 99.7 8.2E-17 2.8E-21 177.0 17.4 194 440-691 18-227 (322)
70 1hqc_A RUVB; extended AAA-ATPa 99.7 4.8E-17 1.6E-21 179.5 15.4 189 35-267 3-218 (324)
71 1xwi_A SKD1 protein; VPS4B, AA 99.7 2.5E-16 8.5E-21 172.6 20.6 195 440-691 12-222 (322)
72 2dhr_A FTSH; AAA+ protein, hex 99.7 4.2E-17 1.4E-21 186.8 14.9 201 39-268 26-252 (499)
73 1ofh_A ATP-dependent HSL prote 99.7 1.7E-16 5.7E-21 173.9 19.0 207 45-267 16-273 (310)
74 1ixz_A ATP-dependent metallopr 99.7 4.1E-16 1.4E-20 165.4 20.1 204 37-269 9-238 (254)
75 4akg_A Glutathione S-transfera 99.7 2E-15 6.7E-20 200.9 30.6 140 65-223 1267-1434(2695)
76 3pfi_A Holliday junction ATP-d 99.7 4.6E-16 1.6E-20 172.6 20.7 190 440-691 29-226 (338)
77 2qp9_X Vacuolar protein sortin 99.7 2.3E-16 7.8E-21 175.4 17.5 194 440-691 51-260 (355)
78 3t15_A Ribulose bisphosphate c 99.7 1.6E-16 5.6E-21 171.7 15.2 157 63-247 34-216 (293)
79 1in4_A RUVB, holliday junction 99.7 4.1E-15 1.4E-19 164.1 26.5 191 34-268 15-231 (334)
80 2ie4_C PP2A-alpha;, serine/thr 99.7 1.1E-16 3.8E-21 171.6 13.0 151 635-806 21-176 (309)
81 2r44_A Uncharacterized protein 99.7 4.2E-16 1.4E-20 172.3 17.1 212 29-271 12-281 (331)
82 1iy2_A ATP-dependent metallopr 99.7 1.6E-15 5.3E-20 163.2 20.3 201 39-268 35-261 (278)
83 3n70_A Transport activator; si 99.7 2E-16 7E-21 152.1 11.4 143 441-638 2-145 (145)
84 2zan_A Vacuolar protein sortin 99.7 1.3E-15 4.4E-20 174.4 19.2 195 440-691 134-344 (444)
85 3t15_A Ribulose bisphosphate c 99.7 3.1E-16 1.1E-20 169.5 12.6 161 448-650 15-198 (293)
86 3te6_A Regulatory protein SIR3 99.7 1.1E-15 3.6E-20 164.6 16.3 219 34-268 12-287 (318)
87 3vfd_A Spastin; ATPase, microt 99.6 2.2E-15 7.4E-20 170.2 18.0 183 440-677 115-313 (389)
88 3pvs_A Replication-associated 99.6 9.2E-16 3.1E-20 174.8 13.8 187 440-699 26-219 (447)
89 3cf0_A Transitional endoplasmi 99.6 2.5E-15 8.5E-20 163.4 16.6 159 440-650 15-199 (301)
90 3u61_B DNA polymerase accessor 99.6 4.2E-15 1.4E-19 163.8 18.6 189 440-699 26-220 (324)
91 3d8b_A Fidgetin-like protein 1 99.6 4.8E-15 1.7E-19 165.0 18.4 195 440-691 84-294 (357)
92 1hqc_A RUVB; extended AAA-ATPa 99.6 6.1E-15 2.1E-19 162.5 18.1 179 440-677 12-199 (324)
93 3b9p_A CG5977-PA, isoform A; A 99.6 8.5E-15 2.9E-19 159.2 18.8 195 440-690 21-231 (297)
94 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 5.9E-15 2E-19 169.3 17.8 206 429-677 11-237 (500)
95 1ypw_A Transitional endoplasmi 99.6 3.5E-17 1.2E-21 200.2 -0.7 201 40-268 473-699 (806)
96 2qz4_A Paraplegin; AAA+, SPG7, 99.6 1.9E-14 6.4E-19 153.4 18.9 165 440-652 6-192 (262)
97 2r44_A Uncharacterized protein 99.6 1.3E-14 4.4E-19 160.4 18.2 205 430-676 17-237 (331)
98 1d2n_A N-ethylmaleimide-sensit 99.6 1.2E-14 4E-19 155.9 16.1 195 43-264 32-246 (272)
99 3bos_A Putative DNA replicatio 99.6 1.2E-14 4.1E-19 152.7 15.8 199 33-268 16-225 (242)
100 1aui_A Calcineurin, serine/thr 99.6 2.7E-15 9.2E-20 167.4 10.9 120 680-805 83-207 (521)
101 3m6a_A ATP-dependent protease 99.6 6.4E-15 2.2E-19 172.6 14.6 197 45-266 82-314 (543)
102 2v1u_A Cell division control p 99.6 1E-14 3.5E-19 164.9 15.6 214 44-268 19-257 (387)
103 1lv7_A FTSH; alpha/beta domain 99.6 2E-14 6.7E-19 152.8 16.9 191 440-691 12-224 (257)
104 2ce7_A Cell division protein F 99.6 1.7E-14 5.9E-19 164.2 17.3 159 440-650 16-199 (476)
105 4akg_A Glutathione S-transfera 99.6 1.3E-12 4.5E-17 174.1 36.8 134 53-217 635-790 (2695)
106 3co5_A Putative two-component 99.6 1.7E-15 5.8E-20 145.2 6.9 138 441-638 5-143 (143)
107 4fcw_A Chaperone protein CLPB; 99.6 3E-14 1E-18 156.0 17.7 201 45-266 18-277 (311)
108 1l8q_A Chromosomal replication 99.6 5.9E-14 2E-18 154.5 20.1 200 40-266 7-214 (324)
109 2qby_B CDC6 homolog 3, cell di 99.6 1.4E-13 4.6E-18 155.6 23.6 220 31-268 10-253 (384)
110 3vkg_A Dynein heavy chain, cyt 99.6 7.3E-14 2.5E-18 186.4 24.4 139 65-222 1304-1471(3245)
111 3hws_A ATP-dependent CLP prote 99.6 2.5E-14 8.4E-19 160.1 17.1 210 46-269 17-324 (363)
112 3h4m_A Proteasome-activating n 99.6 2.7E-14 9.3E-19 154.2 16.8 166 440-650 17-201 (285)
113 1um8_A ATP-dependent CLP prote 99.6 4.6E-14 1.6E-18 158.7 19.2 210 45-268 22-340 (376)
114 1g8p_A Magnesium-chelatase 38 99.6 4E-14 1.4E-18 157.8 17.9 205 440-680 24-282 (350)
115 3uk6_A RUVB-like 2; hexameric 99.6 2E-14 6.9E-19 161.4 15.1 210 440-691 44-302 (368)
116 1g8p_A Magnesium-chelatase 38 99.6 2.9E-14 9.9E-19 158.9 16.2 215 39-271 19-306 (350)
117 3e7a_A PP-1A, serine/threonine 99.6 1E-14 3.4E-19 154.3 11.6 148 636-805 28-180 (299)
118 3icf_A PPT, serine/threonine-p 99.6 8.2E-15 2.8E-19 157.3 10.9 119 681-804 65-189 (335)
119 2qby_A CDC6 homolog 1, cell di 99.5 1E-13 3.6E-18 156.5 19.7 210 44-268 20-253 (386)
120 3hu3_A Transitional endoplasmi 99.5 2.3E-14 8E-19 164.7 14.2 159 440-650 204-385 (489)
121 2bjv_A PSP operon transcriptio 99.5 5.3E-14 1.8E-18 150.1 15.8 199 42-265 4-238 (265)
122 3k1j_A LON protease, ATP-depen 99.5 4.7E-14 1.6E-18 168.1 16.7 206 440-679 41-328 (604)
123 1fnn_A CDC6P, cell division co 99.5 1.9E-13 6.4E-18 154.7 20.8 215 33-268 9-255 (389)
124 2chg_A Replication factor C sm 99.5 1.8E-13 6.2E-18 141.5 18.8 168 440-676 17-191 (226)
125 3ll8_A Serine/threonine-protei 99.5 1.6E-14 5.4E-19 155.5 10.9 120 680-805 70-194 (357)
126 3h63_A Serine/threonine-protei 99.5 1.8E-14 6.3E-19 153.5 11.1 118 681-803 61-184 (315)
127 1ojl_A Transcriptional regulat 99.5 2.8E-14 9.5E-19 154.9 12.7 198 44-267 2-235 (304)
128 2z4s_A Chromosomal replication 99.5 6.2E-14 2.1E-18 160.1 15.9 206 42-269 103-315 (440)
129 1iqp_A RFCS; clamp loader, ext 99.5 1.9E-13 6.4E-18 150.7 18.5 169 440-677 25-200 (327)
130 3te6_A Regulatory protein SIR3 99.5 2.5E-14 8.4E-19 154.0 11.0 221 442-702 22-286 (318)
131 2chq_A Replication factor C sm 99.5 1.2E-13 4E-18 151.7 16.2 167 440-676 17-191 (319)
132 1d2n_A N-ethylmaleimide-sensit 99.5 1.8E-14 6.1E-19 154.5 8.3 190 438-688 31-238 (272)
133 1sxj_D Activator 1 41 kDa subu 99.5 8.2E-14 2.8E-18 155.4 13.2 184 440-678 37-224 (353)
134 1a5t_A Delta prime, HOLB; zinc 99.5 3.3E-13 1.1E-17 148.8 17.5 182 49-263 7-208 (334)
135 1wao_1 Serine/threonine protei 99.5 7.6E-14 2.6E-18 162.0 11.0 118 681-803 214-337 (477)
136 1sxj_B Activator 1 37 kDa subu 99.5 4.3E-13 1.5E-17 147.5 16.3 168 440-677 21-197 (323)
137 1l8q_A Chromosomal replication 99.5 2.1E-13 7.3E-18 150.0 13.7 171 471-699 38-212 (324)
138 2r62_A Cell division protease 99.5 3.7E-14 1.3E-18 151.6 7.3 162 440-650 11-196 (268)
139 1sxj_C Activator 1 40 kDa subu 99.5 7.3E-13 2.5E-17 146.7 17.6 168 440-677 25-200 (340)
140 3pxi_A Negative regulator of g 99.5 4.8E-13 1.7E-17 164.1 17.3 178 44-243 491-703 (758)
141 1r6b_X CLPA protein; AAA+, N-t 99.5 1E-12 3.5E-17 161.6 20.0 198 44-265 458-713 (758)
142 1jr3_A DNA polymerase III subu 99.5 2.2E-12 7.7E-17 144.9 21.1 184 440-677 16-209 (373)
143 1a5t_A Delta prime, HOLB; zinc 99.5 1.2E-12 4.1E-17 144.3 18.3 177 443-677 5-193 (334)
144 2dhr_A FTSH; AAA+ protein, hex 99.4 2E-13 6.7E-18 156.4 11.5 159 440-648 31-212 (499)
145 3f9v_A Minichromosome maintena 99.4 5.5E-14 1.9E-18 166.0 7.1 197 431-650 286-490 (595)
146 2qby_B CDC6 homolog 3, cell di 99.4 9.9E-13 3.4E-17 148.4 16.1 193 440-678 20-231 (384)
147 1njg_A DNA polymerase III subu 99.4 5.6E-12 1.9E-16 132.2 20.6 182 440-677 23-216 (250)
148 1fnn_A CDC6P, cell division co 99.4 3.6E-12 1.2E-16 144.1 20.2 199 440-679 17-228 (389)
149 2gno_A DNA polymerase III, gam 99.4 1.2E-12 4E-17 141.4 15.0 145 444-650 1-152 (305)
150 2gno_A DNA polymerase III, gam 99.4 1.6E-12 5.6E-17 140.3 16.1 147 48-220 1-152 (305)
151 2x8a_A Nuclear valosin-contain 99.4 1.7E-12 5.8E-17 138.4 15.6 159 440-650 10-191 (274)
152 1sxj_E Activator 1 40 kDa subu 99.4 1.1E-12 3.6E-17 146.5 14.6 181 440-677 14-225 (354)
153 3vkg_A Dynein heavy chain, cyt 99.4 1.4E-10 4.7E-15 155.3 36.0 134 53-217 594-750 (3245)
154 1sxj_A Activator 1 95 kDa subu 99.4 2.3E-12 7.9E-17 150.6 16.3 186 440-677 39-240 (516)
155 2z4s_A Chromosomal replication 99.4 5.5E-13 1.9E-17 152.3 10.5 172 471-699 131-310 (440)
156 2v1u_A Cell division control p 99.4 1.3E-12 4.5E-17 147.5 13.2 200 440-679 19-236 (387)
157 1ixz_A ATP-dependent metallopr 99.4 2.7E-12 9.3E-17 135.9 14.8 187 440-691 16-228 (254)
158 3bos_A Putative DNA replicatio 99.4 2.6E-12 8.7E-17 134.7 14.3 165 446-677 37-205 (242)
159 3n70_A Transport activator; si 99.4 1.2E-12 4.3E-17 125.5 10.0 135 45-207 2-142 (145)
160 3nbx_X ATPase RAVA; AAA+ ATPas 99.4 7.4E-12 2.5E-16 143.6 17.7 212 45-279 23-280 (500)
161 1in4_A RUVB, holliday junction 99.4 3.2E-11 1.1E-15 132.9 21.5 179 440-677 25-211 (334)
162 3pxg_A Negative regulator of g 99.4 8.4E-12 2.9E-16 143.7 17.3 172 440-677 180-360 (468)
163 1iy2_A ATP-dependent metallopr 99.3 8.1E-12 2.8E-16 134.1 15.3 187 440-691 40-252 (278)
164 1qvr_A CLPB protein; coiled co 99.3 5.9E-12 2E-16 156.2 15.6 201 44-265 558-817 (854)
165 3co5_A Putative two-component 99.3 3.4E-13 1.1E-17 129.1 3.1 130 45-207 5-140 (143)
166 3k1j_A LON protease, ATP-depen 99.3 1.6E-11 5.6E-16 146.1 17.9 222 35-270 32-358 (604)
167 1jbk_A CLPB protein; beta barr 99.3 2.6E-12 9.1E-17 129.3 8.1 156 439-646 21-194 (195)
168 1nnw_A Hypothetical protein; s 99.3 2.9E-12 1E-16 135.5 7.1 119 682-800 4-141 (252)
169 2qby_A CDC6 homolog 1, cell di 99.2 3.6E-11 1.2E-15 135.6 14.0 196 440-678 20-231 (386)
170 3f8t_A Predicted ATPase involv 99.2 6.3E-11 2.1E-15 131.1 15.2 214 431-676 205-425 (506)
171 1w5s_A Origin recognition comp 99.2 1.2E-10 4.2E-15 132.5 17.5 217 44-267 22-273 (412)
172 2p65_A Hypothetical protein PF 99.2 2E-11 7E-16 122.1 8.3 148 439-638 21-187 (187)
173 3qfm_A SAPH, putative uncharac 99.1 4.8E-10 1.6E-14 119.0 13.4 117 681-799 13-138 (270)
174 1g41_A Heat shock protein HSLU 99.1 5.7E-11 1.9E-15 133.1 6.3 159 432-640 7-181 (444)
175 3f9v_A Minichromosome maintena 99.1 1.2E-10 4E-15 137.6 9.1 160 44-222 295-492 (595)
176 2c9o_A RUVB-like 1; hexameric 99.0 1.5E-10 5E-15 133.2 7.1 99 439-556 36-140 (456)
177 2qen_A Walker-type ATPase; unk 99.0 7.2E-09 2.5E-13 114.9 19.3 185 42-246 10-238 (350)
178 3rqz_A Metallophosphoesterase; 99.0 3.6E-10 1.2E-14 118.7 5.9 117 682-802 6-122 (246)
179 1ny5_A Transcriptional regulat 99.0 5.9E-09 2E-13 116.8 15.6 180 43-242 136-350 (387)
180 3cmw_A Protein RECA, recombina 98.9 1.4E-09 4.8E-14 139.1 11.3 85 472-557 1084-1175(1706)
181 3dzd_A Transcriptional regulat 98.9 9.6E-09 3.3E-13 114.1 16.2 195 44-265 129-359 (368)
182 3ec2_A DNA replication protein 98.9 2.9E-09 1E-13 106.0 9.9 130 472-630 40-172 (180)
183 3cmu_A Protein RECA, recombina 98.9 1.1E-08 3.8E-13 132.2 17.0 83 472-555 1429-1518(2050)
184 1w5s_A Origin recognition comp 98.9 6.6E-09 2.3E-13 118.1 13.3 200 440-678 22-249 (412)
185 2fna_A Conserved hypothetical 98.9 2.2E-08 7.4E-13 111.3 16.3 180 43-246 12-242 (357)
186 3f8t_A Predicted ATPase involv 98.8 4.2E-08 1.4E-12 108.7 15.1 213 43-280 212-478 (506)
187 2kjq_A DNAA-related protein; s 98.8 7.9E-09 2.7E-13 99.0 7.0 92 472-597 38-129 (149)
188 2w58_A DNAI, primosome compone 98.8 1.5E-08 5E-13 102.9 9.2 104 33-150 14-128 (202)
189 3ec2_A DNA replication protein 98.7 3.4E-09 1.2E-13 105.5 3.1 130 36-183 2-143 (180)
190 2w58_A DNAI, primosome compone 98.7 5.5E-09 1.9E-13 106.1 4.2 107 472-599 56-165 (202)
191 1su1_A Hypothetical protein YF 98.7 7.6E-08 2.6E-12 97.9 11.1 71 681-752 27-105 (208)
192 1jr3_D DNA polymerase III, del 98.6 2E-07 6.7E-12 103.0 13.5 176 57-267 10-192 (343)
193 2qgz_A Helicase loader, putati 98.6 4.9E-08 1.7E-12 105.7 6.1 109 471-600 153-265 (308)
194 1jr3_D DNA polymerase III, del 98.5 6.2E-07 2.1E-11 99.0 14.7 147 472-677 20-173 (343)
195 2qgz_A Helicase loader, putati 98.5 8E-08 2.7E-12 104.0 6.1 104 34-149 114-226 (308)
196 1tue_A Replication protein E1; 98.5 1.5E-07 5.3E-12 92.9 7.3 122 51-208 43-180 (212)
197 2kjq_A DNAA-related protein; s 98.5 1.5E-07 5E-12 90.1 7.0 106 64-201 35-141 (149)
198 2kkn_A Uncharacterized protein 98.4 2.5E-07 8.5E-12 91.4 7.0 61 681-748 24-86 (178)
199 2qen_A Walker-type ATPase; unk 98.4 3E-06 1E-10 93.5 16.4 183 440-676 12-233 (350)
200 2r2a_A Uncharacterized protein 98.4 8.3E-07 2.8E-11 89.0 9.6 130 67-208 7-154 (199)
201 1u0j_A DNA replication protein 98.3 1.2E-06 4.1E-11 90.9 10.1 133 471-647 105-248 (267)
202 1s3l_A Hypothetical protein MJ 98.3 3.3E-06 1.1E-10 84.3 12.6 63 682-750 28-90 (190)
203 1tue_A Replication protein E1; 98.3 4.4E-06 1.5E-10 82.5 11.4 116 472-636 60-178 (212)
204 1u0j_A DNA replication protein 98.3 3.5E-06 1.2E-10 87.5 11.2 126 56-218 93-249 (267)
205 2fna_A Conserved hypothetical 98.2 6.9E-06 2.4E-10 90.8 13.5 167 440-650 13-222 (357)
206 1uf3_A Hypothetical protein TT 98.2 5.1E-06 1.7E-10 85.5 11.0 69 682-751 8-79 (228)
207 3upu_A ATP-dependent DNA helic 98.2 3.9E-06 1.3E-10 96.3 10.6 62 30-92 10-72 (459)
208 1ye8_A Protein THEP1, hypothet 98.2 5.4E-06 1.9E-10 81.7 9.5 23 67-89 2-24 (178)
209 2vhj_A Ntpase P4, P4; non- hyd 98.1 3.2E-06 1.1E-10 89.8 5.8 105 66-183 124-236 (331)
210 2a22_A Vacuolar protein sortin 98.0 3.2E-06 1.1E-10 86.3 5.3 90 682-800 28-123 (215)
211 2yvt_A Hypothetical protein AQ 98.0 4.5E-06 1.5E-10 88.0 5.6 69 682-751 8-105 (260)
212 1z6t_A APAF-1, apoptotic prote 98.0 9.3E-05 3.2E-09 88.0 17.6 175 39-246 119-320 (591)
213 2orw_A Thymidine kinase; TMTK, 97.9 1.3E-05 4.6E-10 79.4 7.5 96 472-568 5-102 (184)
214 2r2a_A Uncharacterized protein 97.9 2.1E-05 7.2E-10 78.7 8.9 129 472-636 7-152 (199)
215 3ck2_A Conserved uncharacteriz 97.9 2.3E-05 7.7E-10 77.2 8.6 56 682-748 9-64 (176)
216 1ye8_A Protein THEP1, hypothet 97.9 7.2E-05 2.5E-09 73.6 11.5 23 472-494 2-24 (178)
217 1z2w_A Vacuolar protein sortin 97.9 2.8E-05 9.7E-10 77.7 8.6 63 682-749 13-77 (192)
218 2r8r_A Sensor protein; KDPD, P 97.7 0.00014 4.8E-09 73.3 10.7 153 470-645 6-172 (228)
219 2vhj_A Ntpase P4, P4; non- hyd 97.7 6.9E-05 2.4E-09 79.6 8.7 70 472-556 125-196 (331)
220 3cmw_A Protein RECA, recombina 97.7 4E-05 1.4E-09 98.6 8.0 77 68-152 1085-1175(1706)
221 2b8t_A Thymidine kinase; deoxy 97.6 0.00019 6.5E-09 72.9 9.7 96 472-567 14-114 (223)
222 2orw_A Thymidine kinase; TMTK, 97.5 3.2E-05 1.1E-09 76.6 3.1 117 67-201 5-132 (184)
223 3sfz_A APAF-1, apoptotic pepti 97.5 0.00075 2.6E-08 87.7 16.3 177 38-245 118-319 (1249)
224 3upu_A ATP-dependent DNA helic 97.4 0.0004 1.4E-08 79.5 10.1 112 444-567 29-153 (459)
225 2a5y_B CED-4; apoptosis; HET: 97.3 0.0016 5.5E-08 76.3 14.0 149 47-219 131-305 (549)
226 1vt4_I APAF-1 related killer D 97.2 0.0018 6.3E-08 78.8 13.2 42 46-87 130-172 (1221)
227 3jvv_A Twitching mobility prot 97.2 0.00073 2.5E-08 74.0 8.6 93 471-569 124-221 (356)
228 2r8r_A Sensor protein; KDPD, P 97.1 0.0027 9.3E-08 63.9 11.9 137 63-214 4-171 (228)
229 3dm5_A SRP54, signal recogniti 97.1 0.0038 1.3E-07 69.7 13.5 115 470-594 100-226 (443)
230 2w0m_A SSO2452; RECA, SSPF, un 97.1 0.00041 1.4E-08 71.3 5.2 25 66-90 24-48 (235)
231 2iut_A DNA translocase FTSK; n 97.1 0.0033 1.1E-07 72.2 13.0 143 65-217 214-420 (574)
232 1g5t_A COB(I)alamin adenosyltr 97.1 0.0027 9.2E-08 62.5 10.6 110 472-597 30-167 (196)
233 1xx6_A Thymidine kinase; NESG, 97.1 0.00082 2.8E-08 66.6 7.0 96 472-568 10-107 (191)
234 2cvh_A DNA repair and recombin 97.0 0.00087 3E-08 68.2 6.9 22 66-87 21-42 (220)
235 2w0m_A SSO2452; RECA, SSPF, un 96.9 0.0018 6.1E-08 66.4 8.6 35 472-506 25-59 (235)
236 1xp8_A RECA protein, recombina 96.9 0.0025 8.5E-08 70.0 9.9 78 66-151 75-166 (366)
237 2a5y_B CED-4; apoptosis; HET: 96.9 0.011 3.8E-07 69.2 15.9 44 443-492 131-174 (549)
238 3cmu_A Protein RECA, recombina 96.9 0.0012 4.2E-08 86.0 8.3 84 472-556 1083-1173(2050)
239 2b8t_A Thymidine kinase; deoxy 96.9 0.0014 4.9E-08 66.4 7.1 102 67-184 14-127 (223)
240 2i3b_A HCR-ntpase, human cance 96.9 0.0012 4E-08 65.4 6.3 24 472-495 3-26 (189)
241 1qhx_A CPT, protein (chloramph 96.8 0.0008 2.7E-08 65.9 4.9 34 66-109 4-37 (178)
242 2j9r_A Thymidine kinase; TK1, 96.8 0.0018 6.3E-08 64.6 7.4 95 472-568 30-127 (214)
243 3trf_A Shikimate kinase, SK; a 96.8 0.00052 1.8E-08 67.8 3.4 32 65-106 5-36 (185)
244 3kl4_A SRP54, signal recogniti 96.8 0.0045 1.5E-07 69.2 11.2 116 470-595 97-226 (433)
245 3e1s_A Exodeoxyribonuclease V, 96.8 0.0019 6.6E-08 75.5 8.3 89 472-567 206-304 (574)
246 2zr9_A Protein RECA, recombina 96.8 0.0025 8.6E-08 69.6 8.6 83 472-555 63-152 (349)
247 3hr8_A Protein RECA; alpha and 96.8 0.0031 1.1E-07 68.7 9.3 84 472-556 63-153 (356)
248 2i3b_A HCR-ntpase, human cance 96.7 0.0011 3.7E-08 65.7 4.8 24 67-90 3-26 (189)
249 2zr9_A Protein RECA, recombina 96.7 0.0026 8.7E-08 69.6 8.0 78 66-151 62-153 (349)
250 3vaa_A Shikimate kinase, SK; s 96.7 0.00085 2.9E-08 67.2 3.6 26 64-89 24-49 (199)
251 1u94_A RECA protein, recombina 96.6 0.0021 7.2E-08 70.3 6.7 80 65-151 63-155 (356)
252 2dr3_A UPF0273 protein PH0284; 96.6 0.0051 1.8E-07 63.5 9.1 26 66-91 24-49 (247)
253 3iij_A Coilin-interacting nucl 96.6 0.0013 4.3E-08 64.7 4.2 26 64-89 10-35 (180)
254 1n0w_A DNA repair protein RAD5 96.6 0.0036 1.2E-07 64.6 7.8 24 66-89 25-48 (243)
255 3hr8_A Protein RECA; alpha and 96.6 0.0048 1.6E-07 67.2 9.0 123 21-151 5-153 (356)
256 4a74_A DNA repair and recombin 96.6 0.0024 8.2E-08 65.3 6.4 23 67-89 27-49 (231)
257 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.0057 2E-07 66.3 9.4 90 472-568 173-263 (330)
258 3dm5_A SRP54, signal recogniti 96.5 0.02 6.8E-07 64.0 13.9 76 66-149 101-194 (443)
259 1via_A Shikimate kinase; struc 96.5 0.0013 4.3E-08 64.4 3.8 24 66-89 5-28 (175)
260 2eyu_A Twitching motility prot 96.5 0.0058 2E-07 63.8 8.9 26 471-496 26-51 (261)
261 3kb2_A SPBC2 prophage-derived 96.5 0.0014 4.8E-08 63.6 4.0 23 67-89 3-25 (173)
262 1zuh_A Shikimate kinase; alpha 96.5 0.0012 4.1E-08 64.0 3.3 33 64-106 6-38 (168)
263 1qhx_A CPT, protein (chloramph 96.5 0.0014 4.9E-08 64.1 3.8 35 472-509 5-39 (178)
264 1cr0_A DNA primase/helicase; R 96.5 0.0082 2.8E-07 64.1 10.1 27 65-91 35-61 (296)
265 2ius_A DNA translocase FTSK; n 96.5 0.012 4E-07 67.2 11.7 72 139-217 299-374 (512)
266 3trf_A Shikimate kinase, SK; a 96.5 0.0016 5.6E-08 64.1 4.2 29 472-503 7-35 (185)
267 2ehv_A Hypothetical protein PH 96.5 0.0025 8.5E-08 66.2 5.7 22 472-493 32-53 (251)
268 2dr3_A UPF0273 protein PH0284; 96.5 0.0063 2.2E-07 62.8 8.8 37 472-508 25-61 (247)
269 1gvn_B Zeta; postsegregational 96.5 0.0044 1.5E-07 65.9 7.6 34 472-508 35-68 (287)
270 2iyv_A Shikimate kinase, SK; t 96.5 0.0015 5.2E-08 64.3 3.8 32 66-107 3-34 (184)
271 1n0w_A DNA repair protein RAD5 96.4 0.0051 1.7E-07 63.4 8.0 37 472-508 26-68 (243)
272 1z6t_A APAF-1, apoptotic prote 96.4 0.017 5.9E-07 68.3 13.5 46 440-492 124-169 (591)
273 2cvh_A DNA repair and recombin 96.4 0.0046 1.6E-07 62.6 7.3 34 472-508 22-55 (220)
274 1y63_A LMAJ004144AAA protein; 96.4 0.0012 4.3E-08 65.1 2.8 26 64-89 9-35 (184)
275 1xp8_A RECA protein, recombina 96.4 0.0082 2.8E-07 65.8 9.6 83 472-555 76-165 (366)
276 1u94_A RECA protein, recombina 96.4 0.007 2.4E-07 66.2 8.7 83 472-555 65-154 (356)
277 3jvv_A Twitching mobility prot 96.4 0.0067 2.3E-07 66.3 8.5 120 42-184 105-232 (356)
278 2p5t_B PEZT; postsegregational 96.4 0.0055 1.9E-07 63.8 7.6 36 471-509 33-68 (253)
279 2fz4_A DNA repair protein RAD2 96.3 0.013 4.6E-07 60.2 10.2 24 66-89 109-132 (237)
280 3vaa_A Shikimate kinase, SK; s 96.3 0.0024 8.1E-08 63.9 4.3 23 472-494 27-49 (199)
281 2ze6_A Isopentenyl transferase 96.3 0.0021 7.3E-08 66.9 4.1 32 67-108 3-34 (253)
282 3e1s_A Exodeoxyribonuclease V, 96.3 0.014 4.7E-07 68.3 11.3 27 65-91 204-230 (574)
283 1kag_A SKI, shikimate kinase I 96.3 0.0028 9.7E-08 61.6 4.7 25 65-89 4-28 (173)
284 2rhm_A Putative kinase; P-loop 96.3 0.0016 5.6E-08 64.6 3.0 25 65-89 5-29 (193)
285 4a74_A DNA repair and recombin 96.3 0.0065 2.2E-07 62.0 7.6 37 472-508 27-69 (231)
286 2cdn_A Adenylate kinase; phosp 96.3 0.0031 1.1E-07 63.1 4.9 23 472-494 22-44 (201)
287 3kb2_A SPBC2 prophage-derived 96.3 0.0031 1.1E-07 61.2 4.7 23 472-494 3-25 (173)
288 1aky_A Adenylate kinase; ATP:A 96.3 0.0022 7.4E-08 65.4 3.7 26 64-89 3-28 (220)
289 2ehv_A Hypothetical protein PH 96.3 0.0023 8E-08 66.4 4.1 24 65-88 30-53 (251)
290 3crm_A TRNA delta(2)-isopenten 96.2 0.0055 1.9E-07 65.5 6.9 100 66-183 6-105 (323)
291 1e6c_A Shikimate kinase; phosp 96.2 0.0025 8.6E-08 61.9 3.9 24 66-89 3-26 (173)
292 2cdn_A Adenylate kinase; phosp 96.2 0.0024 8.2E-08 63.9 3.8 25 65-89 20-44 (201)
293 2px0_A Flagellar biosynthesis 96.2 0.035 1.2E-06 59.0 13.0 95 471-567 106-209 (296)
294 3t61_A Gluconokinase; PSI-biol 96.2 0.0029 9.9E-08 63.4 4.3 25 65-89 18-42 (202)
295 1ly1_A Polynucleotide kinase; 96.2 0.0041 1.4E-07 60.8 5.2 21 67-87 4-24 (181)
296 2c95_A Adenylate kinase 1; tra 96.2 0.0026 8.8E-08 63.3 3.6 26 64-89 8-33 (196)
297 1knq_A Gluconate kinase; ALFA/ 96.1 0.0047 1.6E-07 60.2 5.3 34 471-509 9-42 (175)
298 2ewv_A Twitching motility prot 96.1 0.0091 3.1E-07 65.9 8.2 86 471-567 137-232 (372)
299 1zuh_A Shikimate kinase; alpha 96.1 0.0033 1.1E-07 60.8 4.1 28 472-502 9-36 (168)
300 1via_A Shikimate kinase; struc 96.1 0.0028 9.7E-08 61.8 3.6 23 472-494 6-28 (175)
301 1nks_A Adenylate kinase; therm 96.1 0.0029 9.8E-08 62.7 3.7 37 472-508 3-39 (194)
302 1xm7_A Hypothetical protein AQ 96.1 0.0035 1.2E-07 62.4 4.3 45 706-750 42-86 (195)
303 1w4r_A Thymidine kinase; type 96.1 0.0056 1.9E-07 60.1 5.5 24 68-91 23-47 (195)
304 3lda_A DNA repair protein RAD5 96.1 0.012 3.9E-07 65.4 8.6 23 67-89 180-202 (400)
305 2fz4_A DNA repair protein RAD2 96.1 0.011 3.9E-07 60.7 8.1 91 472-566 110-216 (237)
306 3tlx_A Adenylate kinase 2; str 96.1 0.0047 1.6E-07 63.9 5.1 26 64-89 28-53 (243)
307 1nlf_A Regulatory protein REPA 96.0 0.015 5.1E-07 61.5 9.1 24 472-495 32-55 (279)
308 1nlf_A Regulatory protein REPA 96.0 0.018 6.2E-07 60.8 9.7 28 65-92 30-57 (279)
309 3kl4_A SRP54, signal recogniti 96.0 0.046 1.6E-06 61.0 13.3 25 67-91 99-123 (433)
310 3iij_A Coilin-interacting nucl 96.0 0.0044 1.5E-07 60.8 4.4 23 472-494 13-35 (180)
311 1ak2_A Adenylate kinase isoenz 96.0 0.0035 1.2E-07 64.4 3.9 25 65-89 16-40 (233)
312 3lw7_A Adenylate kinase relate 96.0 0.0029 9.8E-08 61.5 3.0 22 67-89 3-24 (179)
313 1kht_A Adenylate kinase; phosp 96.0 0.0036 1.2E-07 61.9 3.8 37 472-508 5-41 (192)
314 3sr0_A Adenylate kinase; phosp 96.0 0.0044 1.5E-07 62.2 4.4 23 67-89 2-24 (206)
315 2ze6_A Isopentenyl transferase 96.0 0.0045 1.6E-07 64.4 4.7 32 472-506 3-34 (253)
316 1w36_D RECD, exodeoxyribonucle 96.0 0.015 5E-07 68.8 9.5 24 472-495 166-189 (608)
317 1tev_A UMP-CMP kinase; ploop, 96.0 0.0029 1E-07 62.7 3.0 24 66-89 4-27 (196)
318 2iyv_A Shikimate kinase, SK; t 96.0 0.0039 1.3E-07 61.3 3.9 23 472-494 4-26 (184)
319 2pt5_A Shikimate kinase, SK; a 96.0 0.0035 1.2E-07 60.6 3.4 23 67-89 2-24 (168)
320 1kht_A Adenylate kinase; phosp 96.0 0.0029 1E-07 62.6 2.9 25 66-90 4-28 (192)
321 1nks_A Adenylate kinase; therm 96.0 0.006 2.1E-07 60.3 5.2 24 67-90 3-26 (194)
322 2ga8_A Hypothetical 39.9 kDa p 96.0 0.0054 1.9E-07 66.1 5.1 42 48-89 3-48 (359)
323 2p5t_B PEZT; postsegregational 96.0 0.0076 2.6E-07 62.7 6.1 24 66-89 33-56 (253)
324 2r6a_A DNAB helicase, replicat 95.9 0.008 2.7E-07 68.5 6.8 25 67-91 205-229 (454)
325 3bh0_A DNAB-like replicative h 95.9 0.024 8.1E-07 61.0 10.2 25 67-91 70-94 (315)
326 3cm0_A Adenylate kinase; ATP-b 95.9 0.0047 1.6E-07 60.8 4.2 24 66-89 5-28 (186)
327 3dl0_A Adenylate kinase; phosp 95.9 0.0028 9.7E-08 64.2 2.7 23 67-89 2-24 (216)
328 1kag_A SKI, shikimate kinase I 95.9 0.0039 1.3E-07 60.5 3.6 23 472-494 6-28 (173)
329 1zak_A Adenylate kinase; ATP:A 95.9 0.0029 1E-07 64.4 2.8 26 64-89 4-29 (222)
330 1y63_A LMAJ004144AAA protein; 95.9 0.0047 1.6E-07 60.9 4.2 36 472-511 12-47 (184)
331 3fb4_A Adenylate kinase; psych 95.9 0.0035 1.2E-07 63.5 3.4 23 67-89 2-24 (216)
332 1g5t_A COB(I)alamin adenosyltr 95.9 0.027 9.2E-07 55.3 9.5 29 64-92 27-55 (196)
333 1zd8_A GTP:AMP phosphotransfer 95.9 0.0031 1.1E-07 64.5 3.0 25 65-89 7-31 (227)
334 1w4r_A Thymidine kinase; type 95.9 0.007 2.4E-07 59.4 5.2 91 472-568 22-116 (195)
335 2orv_A Thymidine kinase; TP4A 95.9 0.027 9.3E-07 56.7 9.6 92 472-568 21-114 (234)
336 2bwj_A Adenylate kinase 5; pho 95.9 0.0036 1.2E-07 62.3 3.3 25 65-89 12-36 (199)
337 3be4_A Adenylate kinase; malar 95.9 0.0034 1.2E-07 63.7 3.1 24 66-89 6-29 (217)
338 3umf_A Adenylate kinase; rossm 95.9 0.0047 1.6E-07 62.4 4.0 24 66-89 30-53 (217)
339 4eun_A Thermoresistant glucoki 95.9 0.0059 2E-07 61.0 4.6 27 63-89 27-53 (200)
340 2rhm_A Putative kinase; P-loop 95.8 0.0055 1.9E-07 60.6 4.3 23 472-494 7-29 (193)
341 3a4m_A L-seryl-tRNA(SEC) kinas 95.8 0.012 4.1E-07 61.5 7.1 26 65-90 4-29 (260)
342 3exa_A TRNA delta(2)-isopenten 95.8 0.011 3.8E-07 62.5 6.6 99 67-183 5-103 (322)
343 2q6t_A DNAB replication FORK h 95.8 0.015 5E-07 66.0 8.3 24 68-91 203-226 (444)
344 3uie_A Adenylyl-sulfate kinase 95.8 0.006 2.1E-07 61.0 4.5 37 472-508 27-63 (200)
345 1pzn_A RAD51, DNA repair and r 95.8 0.014 4.9E-07 63.7 7.8 23 67-89 133-155 (349)
346 1vma_A Cell division protein F 95.8 0.017 5.8E-07 61.7 8.1 39 470-508 104-142 (306)
347 3sr0_A Adenylate kinase; phosp 95.8 0.0049 1.7E-07 61.8 3.6 35 472-511 2-36 (206)
348 3foz_A TRNA delta(2)-isopenten 95.8 0.011 3.8E-07 62.4 6.5 100 66-183 11-110 (316)
349 1qf9_A UMP/CMP kinase, protein 95.8 0.0044 1.5E-07 61.3 3.3 24 66-89 7-30 (194)
350 2z43_A DNA repair and recombin 95.8 0.0062 2.1E-07 66.0 4.7 24 66-89 108-131 (324)
351 1knq_A Gluconate kinase; ALFA/ 95.8 0.0053 1.8E-07 59.8 3.7 24 66-89 9-32 (175)
352 2vli_A Antibiotic resistance p 95.8 0.0036 1.2E-07 61.4 2.5 25 65-89 5-29 (183)
353 3t61_A Gluconokinase; PSI-biol 95.8 0.0062 2.1E-07 60.9 4.3 23 472-494 20-42 (202)
354 1e6c_A Shikimate kinase; phosp 95.8 0.0053 1.8E-07 59.5 3.7 23 472-494 4-26 (173)
355 1ukz_A Uridylate kinase; trans 95.7 0.004 1.4E-07 62.4 2.8 24 66-89 16-39 (203)
356 1zp6_A Hypothetical protein AT 95.7 0.0038 1.3E-07 61.8 2.7 24 66-89 10-33 (191)
357 1aky_A Adenylate kinase; ATP:A 95.7 0.0061 2.1E-07 61.9 4.2 23 472-494 6-28 (220)
358 1zp6_A Hypothetical protein AT 95.7 0.0056 1.9E-07 60.5 3.7 35 472-509 11-45 (191)
359 1gvn_B Zeta; postsegregational 95.7 0.0047 1.6E-07 65.6 3.3 24 66-89 34-57 (287)
360 2vli_A Antibiotic resistance p 95.7 0.0054 1.9E-07 60.1 3.5 23 472-494 7-29 (183)
361 2yhs_A FTSY, cell division pro 95.7 0.04 1.4E-06 62.2 10.8 37 470-506 293-329 (503)
362 1v5w_A DMC1, meiotic recombina 95.7 0.017 5.9E-07 62.9 7.9 23 67-89 124-146 (343)
363 2pt5_A Shikimate kinase, SK; a 95.7 0.0068 2.3E-07 58.5 4.1 23 472-494 2-24 (168)
364 3umf_A Adenylate kinase; rossm 95.7 0.0071 2.4E-07 61.0 4.3 35 472-511 31-65 (217)
365 2yvu_A Probable adenylyl-sulfa 95.7 0.0073 2.5E-07 59.5 4.4 27 65-91 13-39 (186)
366 2yvu_A Probable adenylyl-sulfa 95.7 0.011 3.7E-07 58.3 5.6 36 472-507 15-50 (186)
367 1e4v_A Adenylate kinase; trans 95.7 0.0046 1.6E-07 62.5 2.9 23 67-89 2-24 (214)
368 3uie_A Adenylyl-sulfate kinase 95.6 0.0056 1.9E-07 61.2 3.4 29 62-90 22-50 (200)
369 2c95_A Adenylate kinase 1; tra 95.6 0.0069 2.4E-07 60.1 4.0 23 472-494 11-33 (196)
370 3lw7_A Adenylate kinase relate 95.6 0.0063 2.1E-07 59.0 3.7 22 472-494 3-24 (179)
371 3cm0_A Adenylate kinase; ATP-b 95.6 0.0057 2E-07 60.2 3.4 23 472-494 6-28 (186)
372 3dl0_A Adenylate kinase; phosp 95.6 0.0067 2.3E-07 61.4 3.9 23 472-494 2-24 (216)
373 3fb4_A Adenylate kinase; psych 95.6 0.0074 2.5E-07 61.0 4.2 23 472-494 2-24 (216)
374 1ak2_A Adenylate kinase isoenz 95.6 0.0084 2.9E-07 61.5 4.5 23 472-494 18-40 (233)
375 3io5_A Recombination and repai 95.5 0.028 9.6E-07 59.4 8.4 80 67-151 30-125 (333)
376 1tev_A UMP-CMP kinase; ploop, 95.5 0.007 2.4E-07 59.9 3.7 23 472-494 5-27 (196)
377 4a1f_A DNAB helicase, replicat 95.5 0.02 6.9E-07 61.8 7.4 25 67-91 48-72 (338)
378 1xx6_A Thymidine kinase; NESG, 95.5 0.012 4.2E-07 58.0 5.3 99 68-184 11-119 (191)
379 4eun_A Thermoresistant glucoki 95.5 0.011 3.6E-07 59.1 4.9 33 472-509 31-63 (200)
380 2jaq_A Deoxyguanosine kinase; 95.5 0.0089 3E-07 59.7 4.2 23 67-89 2-24 (205)
381 3nwj_A ATSK2; P loop, shikimat 95.5 0.0083 2.8E-07 62.1 4.0 25 65-89 48-72 (250)
382 2qor_A Guanylate kinase; phosp 95.4 0.0076 2.6E-07 60.4 3.6 26 64-89 11-36 (204)
383 2xb4_A Adenylate kinase; ATP-b 95.4 0.0099 3.4E-07 60.5 4.4 23 67-89 2-24 (223)
384 2pt7_A CAG-ALFA; ATPase, prote 95.4 0.025 8.6E-07 61.2 7.9 25 65-89 171-195 (330)
385 3a4m_A L-seryl-tRNA(SEC) kinas 95.4 0.0088 3E-07 62.5 4.1 36 472-507 6-41 (260)
386 2pez_A Bifunctional 3'-phospho 95.4 0.013 4.4E-07 57.3 5.0 35 472-506 7-41 (179)
387 3io5_A Recombination and repai 95.4 0.016 5.4E-07 61.3 5.9 39 472-510 30-70 (333)
388 3a8t_A Adenylate isopentenyltr 95.4 0.0049 1.7E-07 66.1 2.1 33 66-108 41-73 (339)
389 1ukz_A Uridylate kinase; trans 95.4 0.011 3.6E-07 59.2 4.5 23 472-494 17-39 (203)
390 2bwj_A Adenylate kinase 5; pho 95.4 0.0077 2.6E-07 59.9 3.4 33 472-509 14-46 (199)
391 1zu4_A FTSY; GTPase, signal re 95.4 0.085 2.9E-06 56.6 11.8 40 469-508 104-143 (320)
392 1pzn_A RAD51, DNA repair and r 95.4 0.033 1.1E-06 60.8 8.7 37 472-508 133-175 (349)
393 1ex7_A Guanylate kinase; subst 95.4 0.0082 2.8E-07 59.0 3.5 24 66-89 2-25 (186)
394 2iut_A DNA translocase FTSK; n 95.4 0.16 5.5E-06 58.3 14.6 72 543-646 344-419 (574)
395 3tlx_A Adenylate kinase 2; str 95.4 0.024 8.1E-07 58.6 7.1 23 472-494 31-53 (243)
396 3be4_A Adenylate kinase; malar 95.4 0.0086 2.9E-07 60.7 3.7 23 472-494 7-29 (217)
397 1rz3_A Hypothetical protein rb 95.3 0.031 1E-06 55.8 7.7 37 472-508 24-60 (201)
398 3llm_A ATP-dependent RNA helic 95.3 0.09 3.1E-06 53.8 11.4 19 472-490 78-96 (235)
399 3e2i_A Thymidine kinase; Zn-bi 95.3 0.021 7.2E-07 56.8 6.2 95 472-568 30-127 (219)
400 1qf9_A UMP/CMP kinase, protein 95.3 0.0094 3.2E-07 58.9 3.7 23 472-494 8-30 (194)
401 3lda_A DNA repair protein RAD5 95.3 0.028 9.5E-07 62.4 7.8 37 472-508 180-222 (400)
402 1ly1_A Polynucleotide kinase; 95.3 0.0081 2.8E-07 58.6 3.2 21 472-492 4-24 (181)
403 3crm_A TRNA delta(2)-isopenten 95.3 0.01 3.6E-07 63.4 4.2 32 472-506 7-38 (323)
404 2pbr_A DTMP kinase, thymidylat 95.3 0.012 4.1E-07 58.2 4.4 34 472-505 2-35 (195)
405 1zd8_A GTP:AMP phosphotransfer 95.3 0.0086 2.9E-07 61.2 3.4 23 472-494 9-31 (227)
406 3nh6_A ATP-binding cassette SU 95.3 0.043 1.5E-06 58.5 8.9 23 472-494 82-104 (306)
407 1e4v_A Adenylate kinase; trans 95.3 0.01 3.5E-07 60.0 3.9 23 472-494 2-24 (214)
408 2xxa_A Signal recognition part 95.3 0.11 3.6E-06 58.4 12.5 97 469-565 99-208 (433)
409 1zak_A Adenylate kinase; ATP:A 95.2 0.0075 2.6E-07 61.3 2.9 33 472-509 7-39 (222)
410 2plr_A DTMP kinase, probable t 95.2 0.009 3.1E-07 60.1 3.4 24 66-89 5-28 (213)
411 1cke_A CK, MSSA, protein (cyti 95.2 0.012 4.3E-07 59.8 4.4 24 66-89 6-29 (227)
412 3r20_A Cytidylate kinase; stru 95.2 0.013 4.5E-07 59.7 4.5 25 65-89 9-33 (233)
413 3nwj_A ATSK2; P loop, shikimat 95.2 0.011 3.7E-07 61.2 4.0 23 472-494 50-72 (250)
414 1w36_D RECD, exodeoxyribonucle 95.2 0.047 1.6E-06 64.4 9.9 26 65-90 164-189 (608)
415 2pbr_A DTMP kinase, thymidylat 95.2 0.015 5.2E-07 57.4 4.8 24 67-90 2-25 (195)
416 2plr_A DTMP kinase, probable t 95.2 0.015 5.1E-07 58.4 4.9 25 472-496 6-30 (213)
417 2ga8_A Hypothetical 39.9 kDa p 95.2 0.028 9.7E-07 60.6 7.1 24 471-494 25-48 (359)
418 2grj_A Dephospho-COA kinase; T 95.1 0.011 3.7E-07 58.6 3.5 23 67-89 14-36 (192)
419 2bbw_A Adenylate kinase 4, AK4 95.1 0.011 3.6E-07 61.3 3.6 25 65-89 27-51 (246)
420 2if2_A Dephospho-COA kinase; a 95.1 0.0088 3E-07 59.9 2.8 22 67-89 3-24 (204)
421 3bgw_A DNAB-like replicative h 95.1 0.024 8.1E-07 64.1 6.6 25 67-91 199-223 (444)
422 3lxw_A GTPase IMAP family memb 95.1 0.058 2E-06 55.7 9.0 23 65-87 21-43 (247)
423 1kgd_A CASK, peripheral plasma 95.0 0.011 3.7E-07 58.0 3.2 24 66-89 6-29 (180)
424 3d03_A Phosphohydrolase; glyce 95.0 0.015 5.1E-07 61.1 4.5 56 693-748 26-84 (274)
425 1nn5_A Similar to deoxythymidy 95.0 0.011 3.9E-07 59.5 3.5 26 65-90 9-34 (215)
426 2xb4_A Adenylate kinase; ATP-b 95.0 0.012 4.3E-07 59.8 3.7 23 472-494 2-24 (223)
427 2wwf_A Thymidilate kinase, put 95.0 0.011 3.7E-07 59.5 3.2 26 65-90 10-35 (212)
428 1rz3_A Hypothetical protein rb 95.0 0.034 1.2E-06 55.4 6.8 41 50-90 4-47 (201)
429 3c8u_A Fructokinase; YP_612366 95.0 0.013 4.5E-07 58.8 3.8 39 52-90 7-47 (208)
430 3a8t_A Adenylate isopentenyltr 95.0 0.012 4.2E-07 63.1 3.6 33 472-507 42-74 (339)
431 2z0h_A DTMP kinase, thymidylat 94.9 0.017 5.8E-07 57.2 4.4 31 473-503 3-33 (197)
432 2wwf_A Thymidilate kinase, put 94.9 0.016 5.5E-07 58.2 4.2 24 472-495 12-35 (212)
433 2pez_A Bifunctional 3'-phospho 94.9 0.021 7.1E-07 55.7 4.9 37 66-109 6-42 (179)
434 3foz_A TRNA delta(2)-isopenten 94.9 0.02 7E-07 60.4 4.8 34 472-508 12-45 (316)
435 3eph_A TRNA isopentenyltransfe 94.9 0.031 1.1E-06 61.3 6.5 23 67-89 4-26 (409)
436 2jaq_A Deoxyguanosine kinase; 94.9 0.018 6E-07 57.5 4.3 23 472-494 2-24 (205)
437 3d3q_A TRNA delta(2)-isopenten 94.9 0.013 4.5E-07 63.0 3.4 23 67-89 9-31 (340)
438 2j37_W Signal recognition part 94.8 0.15 5.2E-06 58.0 12.4 38 470-507 101-138 (504)
439 1q57_A DNA primase/helicase; d 94.8 0.067 2.3E-06 61.7 9.6 24 68-91 245-268 (503)
440 2if2_A Dephospho-COA kinase; a 94.8 0.014 4.8E-07 58.4 3.4 22 472-494 3-24 (204)
441 3ake_A Cytidylate kinase; CMP 94.8 0.014 4.7E-07 58.5 3.4 23 67-89 4-26 (208)
442 1p9r_A General secretion pathw 94.8 0.044 1.5E-06 61.1 7.7 78 471-552 168-246 (418)
443 1cke_A CK, MSSA, protein (cyti 94.8 0.016 5.6E-07 58.9 3.9 23 472-494 7-29 (227)
444 2bdt_A BH3686; alpha-beta prot 94.8 0.013 4.4E-07 57.8 3.0 23 67-89 4-26 (189)
445 3e70_C DPA, signal recognition 94.8 0.075 2.6E-06 57.2 9.2 34 471-504 130-163 (328)
446 2v54_A DTMP kinase, thymidylat 94.8 0.012 4.1E-07 58.8 2.7 25 65-89 4-28 (204)
447 3tau_A Guanylate kinase, GMP k 94.8 0.015 5E-07 58.5 3.4 25 65-89 8-32 (208)
448 2zts_A Putative uncharacterize 94.8 0.039 1.3E-06 56.9 6.7 23 66-88 31-53 (251)
449 1m7g_A Adenylylsulfate kinase; 94.8 0.02 6.9E-07 57.6 4.4 29 62-90 22-50 (211)
450 2z0h_A DTMP kinase, thymidylat 94.7 0.015 5E-07 57.7 3.3 24 68-91 3-26 (197)
451 3r20_A Cytidylate kinase; stru 94.7 0.019 6.5E-07 58.5 4.2 33 472-509 11-43 (233)
452 1lvg_A Guanylate kinase, GMP k 94.7 0.016 5.6E-07 57.7 3.6 25 65-89 4-28 (198)
453 2qor_A Guanylate kinase; phosp 94.7 0.015 5E-07 58.3 3.3 23 472-494 14-36 (204)
454 2oap_1 GSPE-2, type II secreti 94.7 0.037 1.3E-06 63.6 7.0 34 472-506 262-295 (511)
455 3iuy_A Probable ATP-dependent 94.7 0.17 5.8E-06 51.3 11.4 18 66-83 58-75 (228)
456 1jjv_A Dephospho-COA kinase; P 94.7 0.011 3.9E-07 59.2 2.4 22 67-89 4-25 (206)
457 1kgd_A CASK, peripheral plasma 94.7 0.019 6.5E-07 56.2 3.9 23 472-494 7-29 (180)
458 1nn5_A Similar to deoxythymidy 94.7 0.024 8.2E-07 57.0 4.8 30 472-501 11-40 (215)
459 2ewv_A Twitching motility prot 94.7 0.019 6.4E-07 63.3 4.2 28 63-90 134-161 (372)
460 3thx_B DNA mismatch repair pro 94.7 0.05 1.7E-06 66.6 8.2 113 67-184 675-797 (918)
461 2z43_A DNA repair and recombin 94.7 0.03 1E-06 60.5 5.8 37 472-508 109-151 (324)
462 1m7g_A Adenylylsulfate kinase; 94.7 0.023 8E-07 57.1 4.6 36 472-507 27-63 (211)
463 2j9r_A Thymidine kinase; TK1, 94.6 0.039 1.3E-06 55.0 5.9 98 69-184 32-139 (214)
464 2i1q_A DNA repair and recombin 94.6 0.04 1.4E-06 59.5 6.6 23 67-89 100-122 (322)
465 2grj_A Dephospho-COA kinase; T 94.6 0.021 7.3E-07 56.4 4.0 34 472-510 14-47 (192)
466 1vma_A Cell division protein F 94.6 0.069 2.4E-06 56.9 8.2 25 67-91 106-130 (306)
467 1jjv_A Dephospho-COA kinase; P 94.5 0.018 6.2E-07 57.6 3.4 21 472-492 4-24 (206)
468 2j41_A Guanylate kinase; GMP, 94.5 0.018 6.1E-07 57.6 3.3 25 65-89 6-30 (207)
469 3sfz_A APAF-1, apoptotic pepti 94.5 0.19 6.4E-06 65.0 13.8 47 440-493 124-170 (1249)
470 3tau_A Guanylate kinase, GMP k 94.5 0.02 6.8E-07 57.6 3.6 23 472-494 10-32 (208)
471 3tr0_A Guanylate kinase, GMP k 94.5 0.018 6.1E-07 57.6 3.2 24 66-89 8-31 (205)
472 3a00_A Guanylate kinase, GMP k 94.5 0.018 6.1E-07 56.7 3.2 23 67-89 3-25 (186)
473 3b9q_A Chloroplast SRP recepto 94.5 0.063 2.2E-06 57.2 7.6 33 471-503 101-133 (302)
474 3c8u_A Fructokinase; YP_612366 94.4 0.035 1.2E-06 55.7 5.2 24 472-495 24-47 (208)
475 2bdt_A BH3686; alpha-beta prot 94.4 0.02 6.9E-07 56.4 3.4 23 472-494 4-26 (189)
476 1v5w_A DMC1, meiotic recombina 94.4 0.051 1.7E-06 59.2 6.9 37 472-508 124-166 (343)
477 3ney_A 55 kDa erythrocyte memb 94.4 0.022 7.4E-07 56.4 3.5 29 60-88 14-42 (197)
478 4e22_A Cytidylate kinase; P-lo 94.4 0.026 8.8E-07 58.6 4.4 24 66-89 28-51 (252)
479 1svm_A Large T antigen; AAA+ f 94.4 0.025 8.7E-07 62.1 4.4 96 63-184 167-265 (377)
480 2r6a_A DNAB helicase, replicat 94.4 0.075 2.6E-06 60.3 8.5 35 472-506 205-240 (454)
481 1ls1_A Signal recognition part 94.4 0.084 2.9E-06 56.0 8.4 97 471-567 99-207 (295)
482 1uj2_A Uridine-cytidine kinase 94.4 0.027 9.2E-07 58.5 4.4 25 65-89 22-46 (252)
483 3thx_A DNA mismatch repair pro 94.4 0.09 3.1E-06 64.6 9.6 114 67-185 664-787 (934)
484 1rj9_A FTSY, signal recognitio 94.4 0.044 1.5E-06 58.5 6.1 34 471-504 103-136 (304)
485 1svm_A Large T antigen; AAA+ f 94.3 0.04 1.4E-06 60.5 5.9 23 472-494 171-193 (377)
486 3exa_A TRNA delta(2)-isopenten 94.3 0.024 8.2E-07 60.0 3.8 33 472-507 5-37 (322)
487 2bbw_A Adenylate kinase 4, AK4 94.3 0.023 7.8E-07 58.8 3.7 23 472-494 29-51 (246)
488 1sky_E F1-ATPase, F1-ATP synth 94.3 0.045 1.5E-06 61.3 6.2 25 66-90 152-176 (473)
489 2gxq_A Heat resistant RNA depe 94.3 0.29 9.8E-06 48.6 11.7 24 66-89 39-63 (207)
490 2j41_A Guanylate kinase; GMP, 94.3 0.023 7.7E-07 56.8 3.4 23 472-494 8-30 (207)
491 3tr0_A Guanylate kinase, GMP k 94.3 0.026 8.8E-07 56.3 3.8 23 472-494 9-31 (205)
492 3ake_A Cytidylate kinase; CMP 94.3 0.028 9.7E-07 56.1 4.1 23 472-494 4-26 (208)
493 2dyk_A GTP-binding protein; GT 94.2 0.08 2.7E-06 50.0 7.2 23 66-88 2-24 (161)
494 1wb9_A DNA mismatch repair pro 94.2 0.12 4E-06 62.6 10.1 23 67-89 609-631 (800)
495 3vkw_A Replicase large subunit 94.2 0.12 4.1E-06 57.5 9.4 88 472-567 163-259 (446)
496 1htw_A HI0065; nucleotide-bind 94.2 0.039 1.3E-06 52.6 4.7 23 472-494 35-57 (158)
497 1vht_A Dephospho-COA kinase; s 94.2 0.022 7.4E-07 57.7 3.0 23 66-89 5-27 (218)
498 3d3q_A TRNA delta(2)-isopenten 94.2 0.028 9.6E-07 60.4 4.0 23 472-494 9-31 (340)
499 1uf9_A TT1252 protein; P-loop, 94.1 0.029 9.9E-07 55.8 3.9 22 472-493 10-31 (203)
500 2eyq_A TRCF, transcription-rep 94.1 0.62 2.1E-05 59.0 16.9 34 472-505 626-659 (1151)
No 1
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=100.00 E-value=4.2e-75 Score=722.46 Aligned_cols=700 Identities=56% Similarity=0.898 Sum_probs=599.8
Q ss_pred CcccCCCCchhhhhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 12 GKNILSQQDEEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 12 ~~~~~~~~~~~~~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
+.++.++.++...+.|++|+.+|++++||.+|+++||+++++++++.++.++.++++||+||||||||++|+++|+.+..
T Consensus 138 ~~~~~~~~~~~~~~~l~~~~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l~~ 217 (854)
T 1qvr_A 138 GRTVQTEHAESTYNALEQYGIDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRIVK 217 (854)
T ss_dssp CCSSCSSCCCCCCSHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ccccccccccccchhHHHHHHhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHHhc
Confidence 34455555666788999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC
Q psy14504 92 GEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR 171 (951)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~ 171 (951)
+.+|..+.+.+++.++++.+..+.++.|+++..++.++..+....+++||||||+|.+.+.+...++.++.+.|++++++
T Consensus 218 ~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~~ 297 (854)
T 1qvr_A 218 GDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALAR 297 (854)
T ss_dssp TCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHHT
T ss_pred CCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHhC
Confidence 88898888999999999999888889999999999999999866678999999999998776666667788899999999
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
+.+.+|++||.+++.+ +.++++|.+||+.|.|++|+.+++..||+.++..++..+++.++++++..++.++.+|+++++
T Consensus 298 ~~i~~I~at~~~~~~~-~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~ 376 (854)
T 1qvr_A 298 GELRLIGATTLDEYRE-IEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERR 376 (854)
T ss_dssp TCCCEEEEECHHHHHH-HTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSC
T ss_pred CCeEEEEecCchHHhh-hccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhccccc
Confidence 9999999999999777 778999999999999999999999999999999888889999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14504 252 MPDKAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYE 331 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 331 (951)
+|++++++++++++..+....+.|..+..+++.+..+..+...+..+.+..+.+|+..++.++..++.++..+...|..+
T Consensus 377 lp~kai~lldea~a~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 456 (854)
T 1qvr_A 377 LPDKAIDLIDEAAARLRMALESAPEEIDALERKKLQLEIEREALKKEKDPDSQERLKAIEAEIAKLTEEIAKLRAEWERE 456 (854)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHSSCSSHHHHSCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHhhccCCchhHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888899999999999999999999999999999
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHH
Q psy14504 332 KTLIKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEI 411 (951)
Q Consensus 332 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~ 411 (951)
+..+..+...+.++++++..++.+.+.+++++++++.+..++.+++.+....+. . .+...+...++.+++..+
T Consensus 457 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~~~~v~~~~l~~~ 529 (854)
T 1qvr_A 457 REILRKLREAQHRLDEVRREIELAERQYDLNRAAELRYGELPKLEAEVEALSEK-L------RGARFVRLEVTEEDIAEI 529 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTTCHHHHHHHHTTHHHHHHHHHHHHHHH-S------SSCSSCCSEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHhcccHHHHHHHhhhhhHHHHHHHHHHHhh-h------cccccccCCcCHHHHHHH
Confidence 999999999999999999999999999999999999999999999998877543 0 133456678999999999
Q ss_pred HHHhhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHH
Q psy14504 412 VSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLS 491 (951)
Q Consensus 412 ~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la 491 (951)
++.++++|..++...+...+.++...+.+.|+||+.+++.+...+...+.|+.+|.+|.+++||+||||||||++|++||
T Consensus 530 v~~~~~ip~~~~~~~~~~~l~~l~~~l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la 609 (854)
T 1qvr_A 530 VSRWTGIPVSKLLEGEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLA 609 (854)
T ss_dssp HHTTSSCHHHHTTCCHHHHHHSHHHHHHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHH
T ss_pred HHHHhCCChHhhcHHHHHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 99999999888877777777788889999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhccee
Q psy14504 492 ACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRL 571 (951)
Q Consensus 492 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~ 571 (951)
+.+++.+.+++.++|+++......+.++|.+++|+|+..++.+++.++..+++|||||||+++++++++.|+++|++|.+
T Consensus 610 ~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~ 689 (854)
T 1qvr_A 610 ATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIEKAHPDVFNILLQILDDGRL 689 (854)
T ss_dssp HHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHHHHHCSSEEEEESSGGGSCHHHHHHHHHHHTTTEE
T ss_pred HHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHHHHhCCCeEEEEecccccCHHHHHHHHHHhccCce
Confidence 99988888999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred ecCCCeEeecCCeEEEEecCCCchhhhhhc--cccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHH
Q psy14504 572 TDNRGRTINFRNTIIVMTSNLGSDKIKEME--KGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 649 (951)
Q Consensus 572 ~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~--~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~ 649 (951)
++..|+.+++++++||+|||.+...+.+.. +.....+...+.+.+.+.|+|+|++||+.++.|.|++.+++..|+...
T Consensus 690 ~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~ 769 (854)
T 1qvr_A 690 TDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQ 769 (854)
T ss_dssp CCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHH
T ss_pred ECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHH
Confidence 999999999999999999999877664421 112455667777778999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehh
Q psy14504 650 LNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 727 (951)
Q Consensus 650 l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~ 727 (951)
+.++..++...++.+.++++++++|+.++|++.+|+|.+.+. +++.+ ..+....++.|++.++++..+.+
T Consensus 770 l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~---i~~~~-----~~~~~~~i~~~~~~~~~~~~~~~ 839 (854)
T 1qvr_A 770 LSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGARPLRRV---IQREL-----ETPLAQKILAGEVKEGDRVQVDV 839 (854)
T ss_dssp HHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTSTHHHH---HHHHT-----HHHHHHHHHHTSSCSSCEEEEEC
T ss_pred HHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChHHHHHH---HHHHH-----HHHHHHHHHhCcCCCCCEEEEEE
Confidence 999999888877789999999999999999999999999998 77776 34556778889988888776654
No 2
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=100.00 E-value=6e-66 Score=634.40 Aligned_cols=590 Identities=54% Similarity=0.856 Sum_probs=478.9
Q ss_pred CchhhhhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCc
Q psy14504 19 QDEEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL 98 (951)
Q Consensus 19 ~~~~~~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~ 98 (951)
.++...+.|++|+.+|+++++|++++++||++++++++...+.+..++|+||+||||||||++|+++|+.+..+.+|..+
T Consensus 155 ~~~~~~~~l~~~~~~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l 234 (758)
T 3pxi_A 155 NSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL 234 (758)
T ss_dssp CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred ccchhhhHHHHHHHHHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhh
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEE
Q psy14504 99 LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIG 178 (951)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~ 178 (951)
.++.++.+++ +.++.|+++.+++.+|..+.. .+++||||| ++.+.++.|++.++++.+++|+
T Consensus 235 ~~~~~~~~~~-----g~~~~G~~e~~l~~~~~~~~~-~~~~iLfiD------------~~~~~~~~L~~~l~~~~v~~I~ 296 (758)
T 3pxi_A 235 RDKRVMTLDM-----GTKYRGEFEDRLKKVMDEIRQ-AGNIILFID------------AAIDASNILKPSLARGELQCIG 296 (758)
T ss_dssp SSCCEECC---------------CTTHHHHHHHHHT-CCCCEEEEC------------C--------CCCTTSSSCEEEE
T ss_pred cCCeEEEecc-----cccccchHHHHHHHHHHHHHh-cCCEEEEEc------------CchhHHHHHHHHHhcCCEEEEe
Confidence 9999998887 577889999999999999985 568899999 2346778899999999999999
Q ss_pred eecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHH
Q psy14504 179 ATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAID 258 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ 258 (951)
+||..+|.+++.++++++|||..|.|++|+.+++..||+.+...++..+++.++++++..++.++.+|++++++|+++++
T Consensus 297 at~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ 376 (758)
T 3pxi_A 297 ATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (758)
T ss_dssp ECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred CCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHH
Confidence 99999999999999999999988999999999999999999998888899999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q psy14504 259 LIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDS 338 (951)
Q Consensus 259 ll~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (951)
+++.+++.+.......|..+..+++.+..+..+.+.+....+. ++...++.++..++.++......|..+
T Consensus 377 ll~~a~~~~~~~~~~~p~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~l~~~~~~~~~~------- 446 (758)
T 3pxi_A 377 LIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEF---EKAASLRDTEQRLREQVEDTKKSWKEK------- 446 (758)
T ss_dssp HHHHHHHHHHHHTTC--CCTHHHHHHHHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHHHHHHHHSGGGHH-------
T ss_pred HHHHHHHHHHhhccCCCcchhhHHHHHHHHHHHHHHHHhCcCH---HHHHHHHHHHHHHHHHHHHHHHHHHHh-------
Confidence 9999999999988888888888888888887776655444332 222233333333322222222222111
Q ss_pred HHHHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCC
Q psy14504 339 QQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGI 418 (951)
Q Consensus 339 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~ 418 (951)
.......++.+++..+++.++++
T Consensus 447 ---------------------------------------------------------~~~~~~~v~~~~i~~~v~~~~~i 469 (758)
T 3pxi_A 447 ---------------------------------------------------------QGQENSEVTVDDIAMVVSSWTGV 469 (758)
T ss_dssp ---------------------------------------------------------HHCC---CCTHHHHHHHHTTC--
T ss_pred ---------------------------------------------------------hcccCcccCHHHHHHHHHHHhCC
Confidence 01224568999999999999999
Q ss_pred CCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC
Q psy14504 419 PVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE 498 (951)
Q Consensus 419 p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~ 498 (951)
|+..+...+...+..++..+.+.++||+.+++.+..++...+.+..+|.+|.+++||+||||||||++|+++|+.+++.+
T Consensus 470 p~~~~~~~~~~~l~~l~~~l~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~ 549 (758)
T 3pxi_A 470 PVSKIAQTETDKLLNMENILHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE 549 (758)
T ss_dssp -----CHHHHSCC-CHHHHHHTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT
T ss_pred ChHHhhHHHHHHHHHHHHHHhCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC
Confidence 99999888888888899999999999999999999999999999999999999999999999999999999999999888
Q ss_pred CceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeE
Q psy14504 499 ESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRT 578 (951)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~ 578 (951)
.++++++|+++.+....+ ++.+++.++..+++|||||||+++++++++.|+++|++|.+++..|+.
T Consensus 550 ~~~i~i~~s~~~~~~~~~--------------~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~ 615 (758)
T 3pxi_A 550 ESMIRIDMSEYMEKHSTS--------------GGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRT 615 (758)
T ss_dssp TCEEEEEGGGGCSSCCCC-----------------CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----C
T ss_pred cceEEEechhcccccccc--------------cchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCE
Confidence 999999999988753322 346778888899999999999999999999999999999999999999
Q ss_pred eecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHH
Q psy14504 579 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLL 658 (951)
Q Consensus 579 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~ 658 (951)
+++.+++||+|||.+... ...+.+.+...|+|+|++|||.+|.|+||+.+++.+|+...+.++..++.
T Consensus 616 ~~~~~~~iI~ttn~~~~~------------~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 683 (758)
T 3pxi_A 616 VDFRNTILIMTSNVGASE------------KDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLK 683 (758)
T ss_dssp CBCTTCEEEEEESSSTTC------------CHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCCeEEEEeCCCChhh------------HHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999987653 12234455677999999999999999999999999999999999999998
Q ss_pred hcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehh
Q psy14504 659 KMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 727 (951)
Q Consensus 659 ~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~ 727 (951)
..++.+.++++++++|++.+|+|.+|+|++.+. +++.+ ..+....++.|++..+++..+.+
T Consensus 684 ~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~---i~~~v-----~~~l~~~~l~~~~~~~~~~~~~~ 744 (758)
T 3pxi_A 684 EQDLSIELTDAAKAKVAEEGVDLEYGARPLRRA---IQKHV-----EDRLSEELLRGNIHKGQHIVLDV 744 (758)
T ss_dssp TTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHH---HHHHT-----HHHHHHHHHTTCSCSSSEEEEEE
T ss_pred hCCCeEEECHHHHHHHHHhCCCCCCCChHHHHH---HHHHH-----HHHHHHHHHcCCCCCCCEEEEEE
Confidence 888889999999999999999999999999999 77777 45667788889888877766543
No 3
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=100.00 E-value=1.4e-64 Score=623.88 Aligned_cols=571 Identities=46% Similarity=0.752 Sum_probs=497.2
Q ss_pred hhhhhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCC
Q psy14504 21 EEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLS 100 (951)
Q Consensus 21 ~~~~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~ 100 (951)
+...+.|++|+.+|+++++|++|+++||++.+++++++.+.+..++++||+||||||||++|+++|+.+....+|..+.+
T Consensus 163 ~~~~~~l~~~~~~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~ 242 (758)
T 1r6b_X 163 AGGEERLENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD 242 (758)
T ss_dssp ------CCSSSCBHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTT
T ss_pred ccchhHHHHHhHhHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 34678999999999999999999999999999999999999999999999999999999999999999988888988889
Q ss_pred CeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC-CCchhHHhhhhhhccCCcEEEEEe
Q psy14504 101 KKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV-EGSIDAGNMLKPELSRGELHCIGA 179 (951)
Q Consensus 101 ~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~-~~~~~~~~~L~~~le~~~i~vI~a 179 (951)
+.++.++++.+..+.++.|+++..++.++..+... +++||||||+|.+.+.+.. .+..++.+.|+++++++.+.+|++
T Consensus 243 ~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~-~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~l~~~~~~~I~a 321 (758)
T 1r6b_X 243 CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQD-TNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGS 321 (758)
T ss_dssp CEEEECCCC---CCCCCSSCHHHHHHHHHHHHSSS-SCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSCSSSCCCEEEEE
T ss_pred CEEEEEcHHHHhccccccchHHHHHHHHHHHHHhc-CCeEEEEechHHHhhcCCCCcchHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999999888889999999999999998743 5789999999999877654 346678889999999999999999
Q ss_pred ecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHH
Q psy14504 180 TTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDL 259 (951)
Q Consensus 180 t~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~l 259 (951)
||.+++.+.+.++++|.+||..+.|++|+.+++.+||+.+...++..+++.++++++..++.++.+|+..+++|++++++
T Consensus 322 t~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~l 401 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDV 401 (758)
T ss_dssp ECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHHH
T ss_pred eCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHHH
Confidence 99999888888999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred HHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHH
Q psy14504 260 IDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIKDSQ 339 (951)
Q Consensus 260 l~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (951)
++++++.......
T Consensus 402 ld~a~~~~~~~~~------------------------------------------------------------------- 414 (758)
T 1r6b_X 402 IDEAGARARLMPV------------------------------------------------------------------- 414 (758)
T ss_dssp HHHHHHHHHHSSS-------------------------------------------------------------------
T ss_pred HHHHHHHHhcccc-------------------------------------------------------------------
Confidence 9988754432100
Q ss_pred HHHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhhCCC
Q psy14504 340 QIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTTGIP 419 (951)
Q Consensus 340 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~~~p 419 (951)
..-...|+.+++..+++.++++|
T Consensus 415 ---------------------------------------------------------~~~~~~v~~~di~~~~~~~~~ip 437 (758)
T 1r6b_X 415 ---------------------------------------------------------SKRKKTVNVADIESVVARIARIP 437 (758)
T ss_dssp ---------------------------------------------------------CCCCCSCCHHHHHHHHHHHSCCC
T ss_pred ---------------------------------------------------------cccCCccCHHHHHHHHHHhcCCC
Confidence 00024588999999999999999
Q ss_pred CcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC
Q psy14504 420 VSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE 499 (951)
Q Consensus 420 ~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~ 499 (951)
+..+.+.+...+..+++.|...++||+.+++.+..++...+.|+.+|.+|.+++||+||||||||++|+++|+.+ +.
T Consensus 438 ~~~~~~~~~~~l~~l~~~l~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l---~~ 514 (758)
T 1r6b_X 438 EKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL---GI 514 (758)
T ss_dssp CCCSSSSHHHHHHHHHHHHTTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH---TC
T ss_pred ccccchhHHHHHHHHHHHHHhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh---cC
Confidence 999988888889999999999999999999999999999999999999999999999999999999999999999 67
Q ss_pred ceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEe
Q psy14504 500 SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTI 579 (951)
Q Consensus 500 ~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~ 579 (951)
+++.++|+++...+.+++++|.++||+|+++++.+++.++.++++|||||||+++++++++.|+++|++|.+++..|+.+
T Consensus 515 ~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~ 594 (758)
T 1r6b_X 515 ELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKA 594 (758)
T ss_dssp EEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEE
T ss_pred CEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHHHHhCCCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEE
Confidence 89999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred ecCCeEEEEecCCCchhhhhh-ccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHH
Q psy14504 580 NFRNTIIVMTSNLGSDKIKEM-EKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLL 658 (951)
Q Consensus 580 ~~~~~iiI~ttn~~~~~~~~~-~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~ 658 (951)
++++++||+|||.+...+.+. ++.........+.+.+...|+|+|++||+.+|.|+|++.+++.+|+...+.++..++.
T Consensus 595 ~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~ 674 (758)
T 1r6b_X 595 DFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLD 674 (758)
T ss_dssp ECTTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999977554331 1111111223445667778999999999999999999999999999999999998888
Q ss_pred hcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehh
Q psy14504 659 KMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 727 (951)
Q Consensus 659 ~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~ 727 (951)
..++.+.++++++++|++.+|++++|+|++.+. +++.+ ..+....++.|++..+++..+.+
T Consensus 675 ~~~~~~~~~~~a~~~l~~~~~~~~~g~R~l~~~---i~~~~-----~~~l~~~~l~~~~~~~~~~~~~~ 735 (758)
T 1r6b_X 675 QKGVSLEVSQEARNWLAEKGYDRAMGARPMARV---IQDNL-----KKPLANELLFGSLVDGGQVTVAL 735 (758)
T ss_dssp HTTEEEEECHHHHHHHHHHHCBTTTBTTTHHHH---HHHHH-----THHHHHHHHHSTTTTCEEEEEEE
T ss_pred HCCcEEEeCHHHHHHHHHhCCCcCCCchHHHHH---HHHHH-----HHHHHHHHHcCcCCCCCEEEEEE
Confidence 888789999999999999999999999999998 77777 44556667778877777665543
No 4
>2dfj_A Diadenosinetetraphosphatase; helices and strands mixture, hydrolase; 2.72A {Shigella flexneri 2A}
Probab=100.00 E-value=1.4e-43 Score=378.27 Aligned_cols=263 Identities=35% Similarity=0.680 Sum_probs=235.9
Q ss_pred cccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHHHHHhhcccCCc
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSK 761 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~ 761 (951)
.+.++||||++..|.++++.+++++..|.++++||++|+|+.+.+|++++++++..+++|+||||.+++.+..+......
T Consensus 3 i~vigDiHG~~~~l~~ll~~~~~~~~~d~~v~lGD~vdrG~~s~~~l~~l~~l~~~~~~v~GNHe~~~l~~~~g~~~~~~ 82 (280)
T 2dfj_A 3 TYLIGDVHGCYDELIALLHKVEFTPGKDTLWLTGDLVARGPGSLDVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKP 82 (280)
T ss_dssp EEEECCCCSCHHHHHHHHHHTTCCTTTCEEEECSCCSSSSSCHHHHHHHHHHTGGGEEECCCHHHHHHHHHHTTSSCCCG
T ss_pred EEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCcCCCCCccHHHHHHHHhCCCceEEEECCCcHHHHhHhcCCcccch
Confidence 46799999999999999999998777799999999999999999999999998767999999999999998876544444
Q ss_pred cccHHHhhCCCCHHHHHHHHhcCCceEEeC--CEEEEecccCcCCCHHHHHHHhHHHHHHhhcccHHhHHHHhcCCCCCC
Q psy14504 762 LDTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLYNHNSIN 839 (951)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~--~~~~vHAG~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 839 (951)
.+++.+++......++++||+++|+++..+ ++++||||++|.|+.++...++++++..|+.+.|..++..||++.+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~l~~lP~~~~~~~~~~~~vHaGi~p~~~l~~~~~~~r~~e~~l~~~~~~~~~~~l~~d~~~~ 162 (280)
T 2dfj_A 83 KDRLTPLLEAPDADELLNWLRRQPLLQIDEEKKLVMAHAGITPQWDLQTAKECARDVEAVLSSDSYPFFLDAMYGDMPNN 162 (280)
T ss_dssp GGCCHHHHTSTTHHHHHHHHHTSCSEEEETTTTEEEESSCCCTTCCHHHHHHHHHHHHHHHHSTTHHHHHHHTTCSCCCS
T ss_pred hhhHHHHhhhhHHHHHHHHHHhCCcEEEECCCeEEEEeCCCCcCcCHHHHHHHHHHHHHhhcCCcHHHHHHHhcCCCCCC
Confidence 556677777777899999999999998755 799999999999999999999999999999999999999999999999
Q ss_pred CCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCCCCCCceEEEccCCCC-Cccc
Q psy14504 840 WDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVLFGHWSTL-GLIM 918 (951)
Q Consensus 840 w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~vv~GH~~~~-~~~~ 918 (951)
|.+++ .|.+|.++.+|++||||||+.+|.+++..++.+. ..++++.|||+.+++.....+|||||||+. ++..
T Consensus 163 w~~~~-----~G~~r~~~~~~~~tr~rf~~~~g~l~~~~r~~~~-~~~~g~~~w~~~~~~~~~~~~vv~GHt~~~~g~~~ 236 (280)
T 2dfj_A 163 WSPEL-----RGLGRLRFITNAFTRMRFCFPNGQLDMYSKESPE-EAPAPLKPWFAIPGPVAEEYSIAFGHWASLEGKGT 236 (280)
T ss_dssp CCTTC-----CHHHHHHHHHHHHHTCCEEETTBEEESSCCSCGG-GCCSSCEEGGGSCCTTTTTSEEEECCCGGGTTCSC
T ss_pred cCCCC-----CCceeEEEeccHHHHHHHhhcCCcEeEEeccChh-hcCccccchhhccccccCCceEEECCcccccCccc
Confidence 98775 8999999999999999999999999998887653 345788999999988778899999999986 7777
Q ss_pred CCCeEEcccccccCCeEEEEEecCCceEEeec
Q psy14504 919 KPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 950 (951)
Q Consensus 919 ~~~~~~lDtG~v~gg~Ltal~l~~~~~~~v~~ 950 (951)
.+|+++|||||||||+|||+++++++++||++
T Consensus 237 ~~~~i~iDTG~v~gG~Ltal~l~~~~~~~v~~ 268 (280)
T 2dfj_A 237 PEGIYALDTGCCWGGSLTCLRWEDKQYFVQPS 268 (280)
T ss_dssp CTTEEECCCCTTTTSEEEEEETTTTEEEEEEC
T ss_pred cCCEEEeecccccCCEEEEEEeCCCcEEEEEC
Confidence 89999999999999999999999999999986
No 5
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=2.6e-41 Score=403.87 Aligned_cols=417 Identities=20% Similarity=0.307 Sum_probs=284.8
Q ss_pred cCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
.-+|+++.|.++.++.+...+. ...+.+|||+||||||||++|+++|+++ +.+++.+
T Consensus 200 ~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~el----------g~~~~~v 269 (806)
T 3cf2_A 200 EVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFFLI 269 (806)
T ss_dssp SCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTT----------TCEEEEE
T ss_pred CCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCeEEEE
Confidence 3478899999877766665432 2456789999999999999999999998 8999999
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCc---hhHHhhhhhhc----cCCcEEEEEe
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPEL----SRGELHCIGA 179 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l----e~~~i~vI~a 179 (951)
++..+. +++.|+.+..++.+|..|+ ...|+||||||+|.|++.++...+ ....+.|+..| +++.++||+|
T Consensus 270 ~~~~l~--sk~~gese~~lr~lF~~A~-~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~~~~V~VIaa 346 (806)
T 3cf2_A 270 NGPEIM--SKLAGESESNLRKAFEEAE-KNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVMAA 346 (806)
T ss_dssp EHHHHH--SSCTTHHHHHHHHHHHHHT-TSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCGGGCEEEEEE
T ss_pred EhHHhh--cccchHHHHHHHHHHHHHH-HcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccccCCEEEEEe
Confidence 999988 7799999999999999998 456999999999999987654332 23445555555 4578999999
Q ss_pred ecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhH
Q psy14504 180 TTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKA 256 (951)
Q Consensus 180 t~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a 256 (951)
||.++ .+|++++| ||+. |+|+.|+.++|.+||+.+++...... +..+..++..+.+|. +.+.
T Consensus 347 TN~~d-----~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~-----dvdl~~lA~~T~Gfs-----gaDL 411 (806)
T 3cf2_A 347 TNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLAD-----DVDLEQVANETHGHV-----GADL 411 (806)
T ss_dssp CSSTT-----TSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECT-----TCCHHHHHHHCCSCC-----HHHH
T ss_pred cCChh-----hcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCc-----ccCHHHHHHhcCCCC-----HHHH
Confidence 99998 89999999 9996 99999999999999998776544332 223677788877766 7888
Q ss_pred HHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q psy14504 257 IDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTLIK 336 (951)
Q Consensus 257 ~~ll~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (951)
..++.+|+..+..+.. ............+.
T Consensus 412 ~~Lv~eA~~~A~~r~~--------------------~~i~~~~~~~~~e~------------------------------ 441 (806)
T 3cf2_A 412 AALCSEAALQAIRKKM--------------------DLIDLEDETIDAEV------------------------------ 441 (806)
T ss_dssp HHHHHHHHHHHHHHHH--------------------HHGGGTCCCCSHHH------------------------------
T ss_pred HHHHHHHHHHHHHhcc--------------------ccccccccccchhh------------------------------
Confidence 8888887654432110 00000000000000
Q ss_pred hHHHHHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHHhh
Q psy14504 337 DSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSRTT 416 (951)
Q Consensus 337 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~~~ 416 (951)
+. .......||..+ +....++.+. +...-.+.++
T Consensus 442 --------~~------~~~v~~~Df~~A--------------l~~~~ps~~r------~~~~~~p~v~------------ 475 (806)
T 3cf2_A 442 --------MN------SLAVTMDDFRWA--------------LSQSNPSALR------ETVVEVPQVT------------ 475 (806)
T ss_dssp --------HH------HCEECTTHHHHH--------------HSSSSCCCCC------CCCCBCCCCC------------
T ss_pred --------hc------cceeeHHHHHHH--------------HHhCCCcccc------cccccCCCCC------------
Confidence 00 000001111111 1111111000 0000011111
Q ss_pred CCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcC----CCCCCCCceEEEEeCCCCCcHHHHHHHHHH
Q psy14504 417 GIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSG----LSDAKRPYGSFMFLGPTGVGKTELCKTLSA 492 (951)
Q Consensus 417 ~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~----~~~~~~p~~~~Ll~GppGtGKT~lA~~la~ 492 (951)
...+.|.+++++.+.+.+...... ......|...+||+||||||||++|+++|.
T Consensus 476 ----------------------w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~ 533 (806)
T 3cf2_A 476 ----------------------WEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIAN 533 (806)
T ss_dssp ----------------------STTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHH
T ss_pred ----------------------HHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHH
Confidence 134667777777777766432110 011122334699999999999999999999
Q ss_pred HhccCCCceEEeccccccchhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH--------------
Q psy14504 493 CIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-------------- 556 (951)
Q Consensus 493 ~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~-------------- 556 (951)
++ +.+|+.++++++..+ |+|.++. +.++..++...+|||||||||.+.+
T Consensus 534 e~---~~~f~~v~~~~l~s~------------~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~ 598 (806)
T 3cf2_A 534 EC---QANFISIKGPELLTM------------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAAD 598 (806)
T ss_dssp TT---TCEEEECCHHHHHTT------------TCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------C
T ss_pred Hh---CCceEEeccchhhcc------------ccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHH
Confidence 98 789999999888764 8887765 6677778888899999999998742
Q ss_pred HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEe
Q psy14504 557 DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVF 634 (951)
Q Consensus 557 ~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f 634 (951)
.+.+.||..|+.-. ...++++|+|||.+.. ++|+++. |||.+|.|
T Consensus 599 rv~~~lL~~mdg~~---------~~~~V~vi~aTN~p~~------------------------lD~AllRpgRfd~~i~v 645 (806)
T 3cf2_A 599 RVINQILTEMDGMS---------TKKNVFIIGATNRPDI------------------------IDPAILRPGRLDQLIYI 645 (806)
T ss_dssp HHHHHHHHHHHSSC---------SSSSEEEECC-CCSSS------------------------SCHHHHSTTTSCCEEEC
T ss_pred HHHHHHHHHHhCCC---------CCCCEEEEEeCCCchh------------------------CCHhHcCCCcceEEEEE
Confidence 36899999998511 2356788889997542 5788886 99999999
Q ss_pred cCCChhhHHHHHHHHH
Q psy14504 635 RYLNRKNILSIANIQL 650 (951)
Q Consensus 635 ~~l~~~~~~~i~~~~l 650 (951)
+.++.++..+|++..+
T Consensus 646 ~lPd~~~R~~il~~~l 661 (806)
T 3cf2_A 646 PLPDEKSRVAILKANL 661 (806)
T ss_dssp -----CHHHHTTTTTS
T ss_pred CCcCHHHHHHHHHHHh
Confidence 9999999999966544
No 6
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=100.00 E-value=1.4e-33 Score=325.87 Aligned_cols=291 Identities=54% Similarity=0.868 Sum_probs=244.2
Q ss_pred CchhhhhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCc
Q psy14504 19 QDEEHIGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL 98 (951)
Q Consensus 19 ~~~~~~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~ 98 (951)
.++...+.|++|+.+|++++||++|+++||+++++++++.++.+...+|+||+||||||||++|+++|+.+..+.+|..+
T Consensus 155 ~~~~~~~~l~~~~~~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l 234 (468)
T 3pxg_A 155 NSNANTPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEIL 234 (468)
T ss_dssp CCSTHHHHHHSSCCBHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTT
T ss_pred CCccCchHHHHHHHHHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhh
Confidence 34457789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEE
Q psy14504 99 LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIG 178 (951)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~ 178 (951)
.+.+++.++++ ..+.|+++..++.+|..+.. .+++||||| ++.++++.|++.++++.+++|+
T Consensus 235 ~~~~~~~l~~~-----~~~~g~~e~~~~~~~~~~~~-~~~~iLfiD------------~~~~a~~~L~~~L~~g~v~vI~ 296 (468)
T 3pxg_A 235 RDKRVMTLDMG-----TKYRGEFEDRLKKVMDEIRQ-AGNIILFID------------AAIDASNILKPSLARGELQCIG 296 (468)
T ss_dssp SSCCEECC---------------CTTHHHHHHHHHT-CCCCEEEEC------------C--------CCCTTSSSCEEEE
T ss_pred cCCeEEEeeCC-----ccccchHHHHHHHHHHHHHh-cCCeEEEEe------------CchhHHHHHHHhhcCCCEEEEe
Confidence 99999998876 45778888889999999984 457899999 2356788999999999999999
Q ss_pred eecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHH
Q psy14504 179 ATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAID 258 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ 258 (951)
+||.++|++++.+++++.+||..|.|++|+.+++..||+.++..++..+++.++++++..++.++.+|+.++++|+++++
T Consensus 297 at~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ 376 (468)
T 3pxg_A 297 ATTLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAID 376 (468)
T ss_dssp ECCTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHH
T ss_pred cCCHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHH
Confidence 99999998888999999999999999999999999999999998888899999999999999999999999999999999
Q ss_pred HHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14504 259 LIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKY 330 (951)
Q Consensus 259 ll~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 330 (951)
+++.+++.........|..+..++..+..+..+........+ .+++..++.+..+++.++...+..|..
T Consensus 377 ll~~a~~~~~~~~~~~p~~i~~l~~~i~~l~~~~~~~~~~~d---~~~~~~l~~~~~~~~~~~~~~~~~~~~ 445 (468)
T 3pxg_A 377 LIDEAGSKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQE---FEKAASLRDTEQRLREQVEDTKKSWKE 445 (468)
T ss_dssp HHHHHHHHHHHHTTSCCSSTHHHHHHHHHHHHHHHHHHHHCC---SHHHHHHHHHHHHHHHHHHHHHSGGGH
T ss_pred HHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999888999999999999888877665444333 255666666777666666666666653
No 7
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=100.00 E-value=1.2e-31 Score=295.26 Aligned_cols=294 Identities=55% Similarity=0.894 Sum_probs=258.1
Q ss_pred HHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14504 426 VEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 505 (951)
Q Consensus 426 ~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 505 (951)
.+...+.++++.|.+.++||+.+++.+...+.....++.+|.+|..+++|+||||||||++|++||+.+...+.+++.++
T Consensus 3 ~~~~~l~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 3 GEREKLLRLEEELHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp HHHHHHHTHHHHHHTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred cHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 34567788999999999999999999999999998888889889889999999999999999999999988778899999
Q ss_pred cccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeE
Q psy14504 506 MSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTI 585 (951)
Q Consensus 506 ~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~i 585 (951)
|+.+........++|.+++++|....+.+...+..++++||||||+|++++.+++.|+++|+++.+.+..+..+++++++
T Consensus 83 ~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 162 (311)
T 4fcw_A 83 MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFRNTV 162 (311)
T ss_dssp GGGCCSTTHHHHHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECTTEE
T ss_pred cccccccccHHHhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECCCcE
Confidence 99998888888999999999998887888899999999999999999999999999999999999998889999999999
Q ss_pred EEEecCCCchhhhhhccc--cHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 586 IVMTSNLGSDKIKEMEKG--DKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 586 iI~ttn~~~~~~~~~~~~--~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
||+|||.+...+....+. .+..+.+.+.+.+...|+|+|++||+.++.|.|++.+++.+|+...+.++...+...+..
T Consensus 163 iI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~ 242 (311)
T 4fcw_A 163 IIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRIS 242 (311)
T ss_dssp EEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCE
T ss_pred EEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcE
Confidence 999999987766655432 344556666667788999999999999999999999999999999999998888877778
Q ss_pred cccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehh
Q psy14504 664 LKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDT 727 (951)
Q Consensus 664 l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~ 727 (951)
+.++++++++|++.+|.+.+|+|++... +++++ ..+....+..|++.+.++..+.+
T Consensus 243 ~~~~~~~~~~l~~~~~~~~gn~R~L~~~---i~~~~-----~~~~~~~i~~~~~~~~~~i~i~~ 298 (311)
T 4fcw_A 243 LELTEAAKDFLAERGYDPVFGARPLRRV---IQREL-----ETPLAQKILAGEVKEGDRVQVDV 298 (311)
T ss_dssp EEECHHHHHHHHHHSCBTTTBTTTHHHH---HHHHT-----HHHHHHHHHHTSSCTTCEEEEEE
T ss_pred EEeCHHHHHHHHHhCCCccCCchhHHHH---HHHHH-----HHHHHHHHHhCCCCCCCEEEEEE
Confidence 9999999999999888889999999998 66666 23445667778887777666543
No 8
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=2.1e-32 Score=334.64 Aligned_cols=420 Identities=20% Similarity=0.306 Sum_probs=275.5
Q ss_pred HhcCCCCCccccHHHHHHHHHHHHc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEE
Q psy14504 38 ARLGKLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 104 (951)
Q Consensus 38 ~rp~~l~~lvG~~~~i~~l~~~l~~-------------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~ 104 (951)
..+.+|++++|+++.++++...+.. ..+.++||+|||||||||+|+++|..+ +..++
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l----------~~~~i 267 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAFFF 267 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTT----------TCEEE
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CCcEE
Confidence 4567899999999888888776642 456789999999999999999999987 77889
Q ss_pred EEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCc---hhHHhhhhhhcc----CCcEEEE
Q psy14504 105 LLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPELS----RGELHCI 177 (951)
Q Consensus 105 ~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~le----~~~i~vI 177 (951)
.+++..+. +.+.|+.+..+..+|..+... .|+++||||++.+.+.+..... ....+.|+.+++ +..+++|
T Consensus 268 ~v~~~~l~--~~~~g~~~~~l~~vf~~a~~~-~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~~~v~vI 344 (806)
T 1ypw_A 268 LINGPEIM--SKLAGESESNLRKAFEEAEKN-APAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVIVM 344 (806)
T ss_dssp EEEHHHHS--SSSTTHHHHHHHHHHHHHHHH-CSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTTSCCEEE
T ss_pred EEEchHhh--hhhhhhHHHHHHHHHHHHHhc-CCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhcccccEEEe
Confidence 99988877 567899999999999999744 5899999999999876543322 224445555553 5678999
Q ss_pred EeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCch
Q psy14504 178 GATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 254 (951)
Q Consensus 178 ~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 254 (951)
++||.++ .+++++++ ||.. +.++.|+.++|.+|++.+...+...... .+..++..+.+|. +.
T Consensus 345 ~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~-----~l~~la~~t~g~~-----g~ 409 (806)
T 1ypw_A 345 AATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDV-----DLEQVANETHGHV-----GA 409 (806)
T ss_dssp EECSCTT-----TSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTC-----CTHHHHHSCSSCC-----HH
T ss_pred cccCCch-----hcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccc-----hhHHHHHhhcCcc-----hH
Confidence 9999987 78999998 9986 9999999999999999877654332222 2344555555544 44
Q ss_pred hHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14504 255 KAIDLIDEAAAKIKIEIDSKPEIMDKLERRLIQLKIEHEAIKREYDESSKKRLLLIKKEINKLEIKYANLEKIWKYEKTL 334 (951)
Q Consensus 255 ~a~~ll~~a~~~~~~~~~~~~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (951)
+...++..++.....+...... +. . .
T Consensus 410 dl~~l~~ea~~~a~r~~~~~i~-~~------------------------~----------------------------~- 435 (806)
T 1ypw_A 410 DLAALCSEAALQAIRKKMDLID-LE------------------------D----------------------------E- 435 (806)
T ss_dssp HHHHHHHHHHHHHHHHTTTTTS-CH------------------------H----------------------------H-
T ss_pred HHHHHHHHHHHHHHhhhccccc-hh------------------------h----------------------------h-
Confidence 5545444443222111000000 00 0 0
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhhcCchHhhhhhhhhchHHHHHHHHHhhhhhccCCCccccccccccccChhHHHHHHHH
Q psy14504 335 IKDSQQIKEEIEKVRLKINKATRKSDWQTVSKLKYGELNKLERILKEKSQKDIQLPNNANKFTLLKTKVGSEEIAEIVSR 414 (951)
Q Consensus 335 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~i~~~~~~ 414 (951)
.+ .. .. .....++.+++...+..
T Consensus 436 ---------~~--------------~~-~~---------------------------------~~~~~v~~~d~~~al~~ 458 (806)
T 1ypw_A 436 ---------TI--------------DA-EV---------------------------------MNSLAVTMDDFRWALSQ 458 (806)
T ss_dssp ---------HC--------------CH-HH---------------------------------HTTCCCCTTHHHHHHHH
T ss_pred ---------cc--------------ch-hh---------------------------------hhhhhhhhhhhhccccc
Confidence 00 00 00 00001112222222221
Q ss_pred hhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhc----CCCCCCCCceEEEEeCCCCCcHHHHHHHH
Q psy14504 415 TTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRS----GLSDAKRPYGSFMFLGPTGVGKTELCKTL 490 (951)
Q Consensus 415 ~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~----~~~~~~~p~~~~Ll~GppGtGKT~lA~~l 490 (951)
......... ...........+.|++.+++.+...+..... .......+..++||+||||||||++|++|
T Consensus 459 ~~~s~~~~~-------~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakal 531 (806)
T 1ypw_A 459 SNPSALRET-------VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531 (806)
T ss_dssp SCCCCCCCC-------CCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHH
T ss_pred cCchhhhhh-------cccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHH
Confidence 110000000 0000001124577888888877776643211 01111233447999999999999999999
Q ss_pred HHHhccCCCceEEeccccccchhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-------------
Q psy14504 491 SACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN------------- 555 (951)
Q Consensus 491 a~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~------------- 555 (951)
|..+ +.+++.++++++... |+|..+. +.++..++...++||||||||++.
T Consensus 532 a~~~---~~~~i~v~~~~l~~~------------~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~ 596 (806)
T 1ypw_A 532 ANEC---QANFISIKGPELLTM------------WFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGA 596 (806)
T ss_dssp HHHH---TCCCCCCCCSSSTTC------------CTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHH
T ss_pred HHHh---CCCEEEEechHhhhh------------hcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchh
Confidence 9998 668888888877543 5665544 455666677778999999999852
Q ss_pred -HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEE
Q psy14504 556 -SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDII 632 (951)
Q Consensus 556 -~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i 632 (951)
..+++.|++.|+... ...+++||+|||.... ++|++++ ||+.+|
T Consensus 597 ~~~v~~~LL~~ld~~~---------~~~~v~vI~tTN~~~~------------------------ld~allrpgRf~~~i 643 (806)
T 1ypw_A 597 ADRVINQILTEMDGMS---------TKKNVFIIGATNRPDI------------------------IDPAILRPGRLDQLI 643 (806)
T ss_dssp HHHHHHHHHTTCC---------------CCBCCCCCBSCGG------------------------GSCTTSSGGGTTSCC
T ss_pred HHHHHHHHHHHHhccc---------ccCCeEEEEecCCccc------------------------CCHHHhCccccCcee
Confidence 456788888887521 3457889999997542 5678887 999999
Q ss_pred EecCCChhhHHHHHHHHHH
Q psy14504 633 VFRYLNRKNILSIANIQLN 651 (951)
Q Consensus 633 ~f~~l~~~~~~~i~~~~l~ 651 (951)
.|++++.++..+|++..+.
T Consensus 644 ~~~~p~~~~r~~Il~~~l~ 662 (806)
T 1ypw_A 644 YIPLPDEKSRVAILKANLR 662 (806)
T ss_dssp CCCCCCCSHHHHHTTTTTS
T ss_pred ecCCCCHHHHHHHHHHHhc
Confidence 9999999999999766553
No 9
>2qjc_A Diadenosine tetraphosphatase, putative; putative diadenosine tetraphosphatase, monomer, PSI- 2, protein structure initiative, nysgrc; 2.05A {Trypanosoma brucei}
Probab=99.94 E-value=6.3e-27 Score=248.53 Aligned_cols=212 Identities=27% Similarity=0.418 Sum_probs=152.4
Q ss_pred ccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHHHHHhhccc--
Q psy14504 681 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININK-- 758 (951)
Q Consensus 681 ~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~-- 758 (951)
+.+.++|+||++..+.++++.+++.++.|.++++||++|+|+.+.++++++.++ .+++|+||||.+++.++.+...
T Consensus 20 ~i~visDiHg~~~~l~~~l~~~~~~~~~d~ii~~GD~vd~g~~~~~~l~~l~~~--~~~~v~GNHd~~~~~~~~~~~~~~ 97 (262)
T 2qjc_A 20 RVIIVGDIHGCRAQLEDLLRAVSFKQGSDTLVAVGDLVNKGPDSFGVVRLLKRL--GAYSVLGNHDAKLLKLVKKLGKKE 97 (262)
T ss_dssp CEEEECCCTTCHHHHHHHHHHHTCCTTTSEEEECSCCSSSSSCHHHHHHHHHHH--TCEECCCHHHHHHHHHHHCC----
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhccCCCCEEEEecCCCCCCCCHHHHHHHHHHC--CCEEEeCcChHHHHhhhcCCCccc
Confidence 567899999999999999999988666699999999999999999999999865 4899999999999887654321
Q ss_pred ---CCccccHHHhhCCCCHHHHHHHHhcCCceEEeC--CEEEEecccCcCCCHHHHHHHhHHHHHHhhcccHHhHHHHhc
Q psy14504 759 ---KSKLDTFDDILDAPDKKKLVSWLRTQPLAIYYK--KYLMIHAGVAKQWTAQQTIKLSHQVEKILRTSYWKNLFFKLY 833 (951)
Q Consensus 759 ---~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~--~~~~vHAG~~p~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 833 (951)
.....+.-.+......+++++||+++|++++.+ ++++||||+.|.++++... .
T Consensus 98 ~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~i~~~~i~~vHgg~~p~~~~~~~~------~---------------- 155 (262)
T 2qjc_A 98 CLKGRDAKSSLAPLAQSIPTDVETYLSQLPHIIRIPAHNVMVAHAGLHPQRPVDRQY------E---------------- 155 (262)
T ss_dssp ---------CHHHHHHHCCHHHHHHHHTCCSEEEEGGGTEEEESSCCCTTSCGGGCC------H----------------
T ss_pred cccccchHHHHHHHHhhhhHHHHHHHHcCCcEEEECCCcEEEEECCCCCCCCcccCC------H----------------
Confidence 111111111111223468899999999998854 8999999999987643210 0
Q ss_pred CCCCCCCCccccccccccchhhhHhhhccccccccCC------CCcccccccccCCCCCCCCCCCcccCCCCCCCCceEE
Q psy14504 834 NHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKI------DGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVL 907 (951)
Q Consensus 834 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~------~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~vv 907 (951)
+.++++|++.. +|.. .+.. +..+....+|++.+++ ...||
T Consensus 156 --------------------------~~l~~ir~~~~~~~~~~~G~~---~~~~--d~~~~~~~~w~~~~~g---~~~vv 201 (262)
T 2qjc_A 156 --------------------------DEVTTMRNLIEKEQEATGGVT---LTAT--EETNDGGKPWASMWRG---PETVV 201 (262)
T ss_dssp --------------------------HHHHHCCEEEEC-------CC---EEEE--SCSTTCCEEGGGGCCC---SSEEE
T ss_pred --------------------------HHHhhhhhcccccccCCCCcc---cccc--CCCCcCCCChhhccCC---CCEEE
Confidence 01112222111 2220 0000 0112245688876653 46899
Q ss_pred EccCCCCCcccCC--CeEEcccccccCCeEEEEEecCCceEEeec
Q psy14504 908 FGHWSTLGLIMKP--NIICLDTGCVWGNKLTALCLEDRSIIQVNN 950 (951)
Q Consensus 908 ~GH~~~~~~~~~~--~~~~lDtG~v~gg~Ltal~l~~~~~~~v~~ 950 (951)
||||++.++...+ ++++|||||+|||+|||+++++++++||++
T Consensus 202 fGHt~~~~~~~~~~~~~i~IDtG~~~gG~Lt~l~l~~~~~~~~~~ 246 (262)
T 2qjc_A 202 FGHDARRGLQEQYKPLAIGLDSRCVYGGRLSAAVFPGGCIISVPG 246 (262)
T ss_dssp ECCCGGGCCBCTTTTTEEECCCBGGGTSEEEEEEETTTEEEEEEC
T ss_pred ECCCccccccccCCCCEEEeeCccccCCeeEEEEEcCCcEEEEec
Confidence 9999999988888 999999999999999999999999999986
No 10
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.93 E-value=9.5e-25 Score=239.93 Aligned_cols=202 Identities=22% Similarity=0.268 Sum_probs=164.0
Q ss_pred hcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
..-+|+++.|.++.++.+...+. .+.++++|||||||||||++|+++|.++ +++++.
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~----------~~~f~~ 212 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHT----------DCKFIR 212 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhh----------CCCceE
Confidence 45689999999988877765432 3567899999999999999999999999 999999
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC---chh---HHhhhhhhcc----CCcEE
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SID---AGNMLKPELS----RGELH 175 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~---~~~~L~~~le----~~~i~ 175 (951)
++.+.+. ++|.|+++..++.+|..|+. ..||||||||+|.+++.+.... ... ..+.|+..|+ ...++
T Consensus 213 v~~s~l~--sk~vGese~~vr~lF~~Ar~-~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~ 289 (405)
T 4b4t_J 213 VSGAELV--QKYIGEGSRMVRELFVMARE-HAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIK 289 (405)
T ss_dssp EEGGGGS--CSSTTHHHHHHHHHHHHHHH-TCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEE
T ss_pred EEhHHhh--ccccchHHHHHHHHHHHHHH-hCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeE
Confidence 9999988 78999999999999999984 4699999999999998764322 122 2334444443 46799
Q ss_pred EEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 176 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 176 vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
||+|||+++ .+||+++| ||+. |+|+.|+.++|.+||+.+++......++ .+..++..+.+|.
T Consensus 290 vIaATNrpd-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~~dv-----dl~~lA~~t~G~S----- 354 (405)
T 4b4t_J 290 IIMATNRLD-----ILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLTRGI-----NLRKVAEKMNGCS----- 354 (405)
T ss_dssp EEEEESCSS-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCCSSC-----CHHHHHHHCCSCC-----
T ss_pred EEeccCChh-----hCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCCccC-----CHHHHHHHCCCCC-----
Confidence 999999999 89999999 9996 9999999999999999888765433222 3677788877765
Q ss_pred chhHHHHHHHHHHHhH
Q psy14504 253 PDKAIDLIDEAAAKIK 268 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~ 268 (951)
++++..++.+|+..+.
T Consensus 355 GADi~~l~~eA~~~Ai 370 (405)
T 4b4t_J 355 GADVKGVCTEAGMYAL 370 (405)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8889999998876654
No 11
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=3.3e-24 Score=235.70 Aligned_cols=203 Identities=23% Similarity=0.286 Sum_probs=163.8
Q ss_pred hcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
...+|+++.|.++.++.|...+. .+.+.++|||||||||||++|+++|.++ +.+++.
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~----------~~~fi~ 246 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQT----------SATFLR 246 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHh----------CCCEEE
Confidence 44589999999988877766432 3567899999999999999999999999 899999
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC---chhHHh---hhhhhc----cCCcEE
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDAGN---MLKPEL----SRGELH 175 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~---~L~~~l----e~~~i~ 175 (951)
++.+.+. ++|.|+.+..++.+|..|+. ..||||||||+|.+++.+...+ +..... .|+..+ ..+.++
T Consensus 247 v~~s~l~--sk~vGesek~ir~lF~~Ar~-~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~Vi 323 (437)
T 4b4t_I 247 IVGSELI--QKYLGDGPRLCRQIFKVAGE-NAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVK 323 (437)
T ss_dssp EESGGGC--CSSSSHHHHHHHHHHHHHHH-TCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEE
T ss_pred EEHHHhh--hccCchHHHHHHHHHHHHHh-cCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEE
Confidence 9999988 78999999999999999984 4699999999999998764322 222333 333333 356799
Q ss_pred EEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 176 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 176 vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
||+|||.++ .+||+|+| ||+. |+|+.|+.++|.+||+.++.......++ .+..++..+.+|.
T Consensus 324 VIaATNrpd-----~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~~dv-----dl~~LA~~T~GfS----- 388 (437)
T 4b4t_I 324 VIMATNKIE-----TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLSEDV-----NLETLVTTKDDLS----- 388 (437)
T ss_dssp EEEEESCST-----TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBCSCC-----CHHHHHHHCCSCC-----
T ss_pred EEEeCCChh-----hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCCCcC-----CHHHHHHhCCCCC-----
Confidence 999999999 89999999 9996 9999999999999999888764433222 3677788877765
Q ss_pred chhHHHHHHHHHHHhHH
Q psy14504 253 PDKAIDLIDEAAAKIKI 269 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~~ 269 (951)
++++..++.+|+..+..
T Consensus 389 GADI~~l~~eA~~~Air 405 (437)
T 4b4t_I 389 GADIQAMCTEAGLLALR 405 (437)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78899999988766543
No 12
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.92 E-value=1.2e-23 Score=233.75 Aligned_cols=201 Identities=24% Similarity=0.293 Sum_probs=163.2
Q ss_pred cCCCCCccccHHHHHHHHHHH-------------HcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVL-------------QRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l-------------~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
.-+|+++.|.++.++.|...+ ....++++|||||||||||++|+++|.++ +.+++.+
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~----------~~~fi~v 274 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRT----------DATFIRV 274 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHH----------TCEEEEE
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhcc----------CCCeEEE
Confidence 358999999998888876643 23678899999999999999999999999 8999999
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCc---hhH---Hhhhhhhc----cCCcEEE
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDA---GNMLKPEL----SRGELHC 176 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~---~~~L~~~l----e~~~i~v 176 (951)
+++.+. ++|.|+++..++.+|..|+. ..||||||||+|.++..+...++ ... .+.++..| ..+.++|
T Consensus 275 s~s~L~--sk~vGesek~ir~lF~~Ar~-~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViV 351 (467)
T 4b4t_H 275 IGSELV--QKYVGEGARMVRELFEMART-KKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKV 351 (467)
T ss_dssp EGGGGC--CCSSSHHHHHHHHHHHHHHH-TCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEE
T ss_pred EhHHhh--cccCCHHHHHHHHHHHHHHh-cCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEE
Confidence 999988 78999999999999999984 56999999999999987654322 122 22333333 3568999
Q ss_pred EEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCc
Q psy14504 177 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 253 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 253 (951)
|+|||+++ .+|++++| ||+. |+|+.|+.++|.+||+.+++......++ .+..++..+.+|. +
T Consensus 352 IaATNrpd-----~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~~dv-----dl~~LA~~T~GfS-----G 416 (467)
T 4b4t_H 352 MFATNRPN-----TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVERGI-----RWELISRLCPNST-----G 416 (467)
T ss_dssp EEECSCTT-----SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBCSSC-----CHHHHHHHCCSCC-----H
T ss_pred EeCCCCcc-----cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCCCCC-----CHHHHHHHCCCCC-----H
Confidence 99999998 89999999 9997 9999999999999999888765433333 2567788877765 7
Q ss_pred hhHHHHHHHHHHHhH
Q psy14504 254 DKAIDLIDEAAAKIK 268 (951)
Q Consensus 254 ~~a~~ll~~a~~~~~ 268 (951)
+++..++.+|+..+.
T Consensus 417 ADI~~l~~eAa~~Ai 431 (467)
T 4b4t_H 417 AELRSVCTEAGMFAI 431 (467)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 889999998876654
No 13
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.92 E-value=5.8e-25 Score=246.67 Aligned_cols=255 Identities=22% Similarity=0.357 Sum_probs=179.3
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHh----hhcCCCCC--CCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14504 432 LNIENLLCKRVVGQDEAISAVSNAIRR----SRSGLSDA--KRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 505 (951)
Q Consensus 432 ~~l~~~l~~~v~Gq~~~~~~l~~~~~~----~~~~~~~~--~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 505 (951)
.++...|.+.|+||+.+++.+..++.. ...+.... ..+..++||+||||||||++|++||+.+ +.+++.++
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~---~~~~~~~~ 83 (363)
T 3hws_A 7 HEIRNHLDDYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL---DVPFTMAD 83 (363)
T ss_dssp HHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEE
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc---CCCEEEec
Confidence 456777888999999999999988842 22222211 1234579999999999999999999998 67999999
Q ss_pred cccccchhchhcccCCCCCCccccccchhHHHHH-------hCCCeEEEEccccccCHH--------------HHHHHHH
Q psy14504 506 MSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKANSD--------------VFNILLQ 564 (951)
Q Consensus 506 ~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~iDEid~~~~~--------------~~~~Ll~ 564 (951)
++++... +|.|.+..+.+...+. .++++||||||+|++++. +++.|++
T Consensus 84 ~~~l~~~-----------~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~ 152 (363)
T 3hws_A 84 ATTLTEA-----------GYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLK 152 (363)
T ss_dssp HHHHTTC-----------HHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHH
T ss_pred hHHhccc-----------ccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHH
Confidence 9876432 3555544444444433 345789999999999876 9999999
Q ss_pred Hhhccee---ecCCCeEee--------cCCeEEEEecCC-Cchhhhhh-cc-----------------ccHHHHHHHH--
Q psy14504 565 ILDDGRL---TDNRGRTIN--------FRNTIIVMTSNL-GSDKIKEM-EK-----------------GDKEIIKLAV-- 612 (951)
Q Consensus 565 ~le~g~~---~~~~g~~~~--------~~~~iiI~ttn~-~~~~~~~~-~~-----------------~~~~~~~~~~-- 612 (951)
+|+ |.. .+..|+..+ .+|.+||+++|. +.+.+.+. .+ .....+...+
T Consensus 153 ~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~ 231 (363)
T 3hws_A 153 LIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEP 231 (363)
T ss_dssp HHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCH
T ss_pred Hhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCH
Confidence 999 543 233444443 445555555554 33332221 00 0011111111
Q ss_pred HHHHHhccChhHhhccCcEEEecCCChhhHHHHHHH----HHHHHHHHHHhcCCccccchHHHHHHHHhccccccccccc
Q psy14504 613 MNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANI----QLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDV 688 (951)
Q Consensus 613 ~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~----~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dl 688 (951)
.+.....|+|+|++||+.++.|.|++++++.+|+.. .+.++...+...++.+.++++++++|++.+|+|++|+|.|
T Consensus 232 ~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L 311 (363)
T 3hws_A 232 EDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGL 311 (363)
T ss_dssp HHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTH
T ss_pred HHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHH
Confidence 122344599999999999999999999999999998 7777877777778889999999999999999999999999
Q ss_pred ccchHHHHHHHHhhcc
Q psy14504 689 HGCKKSLSILLKKIHK 704 (951)
Q Consensus 689 hg~~~~l~~~l~~~~~ 704 (951)
.+. +++++...-+
T Consensus 312 ~~~---ie~~~~~~l~ 324 (363)
T 3hws_A 312 RSI---VEAALLDTMY 324 (363)
T ss_dssp HHH---HHHHHHHHHH
T ss_pred HHH---HHHHHHHHHH
Confidence 999 8877755444
No 14
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=4.6e-24 Score=238.59 Aligned_cols=202 Identities=20% Similarity=0.233 Sum_probs=163.5
Q ss_pred hcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
...+|+++.|.++.++.+...+. .+.++++|||||||||||++|+++|.++ +++++.
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~----------~~~f~~ 245 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQT----------NATFLK 245 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHh----------CCCEEE
Confidence 45589999999998888776421 3567899999999999999999999999 999999
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC---chhH---Hhhhhhhcc----CCcEE
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDA---GNMLKPELS----RGELH 175 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~---~~~L~~~le----~~~i~ 175 (951)
++++.+. ++|.|+.+..++.+|..++.. .||||||||+|.+++.+.... .... .+.|+..|+ ...++
T Consensus 246 v~~s~l~--~~~vGese~~ir~lF~~A~~~-aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~Vi 322 (434)
T 4b4t_M 246 LAAPQLV--QMYIGEGAKLVRDAFALAKEK-APTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVK 322 (434)
T ss_dssp EEGGGGC--SSCSSHHHHHHHHHHHHHHHH-CSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSE
T ss_pred Eehhhhh--hcccchHHHHHHHHHHHHHhc-CCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEE
Confidence 9999988 789999999999999999854 599999999999998764322 1222 233444443 46799
Q ss_pred EEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 176 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 176 vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
||+|||.++ .+||+++| ||+. |+|+.|+.++|.+||+.+++.......+ .+..++..+.+|.
T Consensus 323 VIaaTNrp~-----~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~dv-----dl~~lA~~t~G~s----- 387 (434)
T 4b4t_M 323 VLAATNRVD-----VLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTDDDI-----NWQELARSTDEFN----- 387 (434)
T ss_dssp EEEECSSCC-----CCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBCSCC-----CHHHHHHHCSSCC-----
T ss_pred EEEeCCCch-----hcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCCCcC-----CHHHHHHhCCCCC-----
Confidence 999999998 89999998 9997 9999999999999999888875443333 2567788877765
Q ss_pred chhHHHHHHHHHHHhH
Q psy14504 253 PDKAIDLIDEAAAKIK 268 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~ 268 (951)
++++..++.+|+..+.
T Consensus 388 GADi~~l~~eA~~~a~ 403 (434)
T 4b4t_M 388 GAQLKAVTVEAGMIAL 403 (434)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7888888888875543
No 15
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=1.6e-23 Score=234.37 Aligned_cols=203 Identities=21% Similarity=0.280 Sum_probs=163.3
Q ss_pred hcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
..-+|+++.|.++.++.+...+. ...++++|||||||||||++|+++|.++ +++++.
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~----------~~~~~~ 245 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATI----------GANFIF 245 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEE
Confidence 34489999999988877765432 3567899999999999999999999999 999999
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC---chh---HHhhhhhhcc----CCcEE
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SID---AGNMLKPELS----RGELH 175 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~---~~~~L~~~le----~~~i~ 175 (951)
++++.+. ++|.|+++..++.+|..++. ..||||||||+|.+++.+...+ +.. ..+.|+..|+ .+.++
T Consensus 246 v~~s~l~--sk~~Gese~~ir~~F~~A~~-~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vi 322 (437)
T 4b4t_L 246 SPASGIV--DKYIGESARIIREMFAYAKE-HEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTK 322 (437)
T ss_dssp EEGGGTC--CSSSSHHHHHHHHHHHHHHH-SCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSE
T ss_pred Eehhhhc--cccchHHHHHHHHHHHHHHh-cCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeE
Confidence 9999988 78999999999999999984 4699999999999998764332 122 2334555553 46799
Q ss_pred EEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 176 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 176 vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
||+|||.++ .+||+|+| ||+. |+|+.|+.++|.+||+.++........+ .+..++..+.+|.
T Consensus 323 vI~ATNrp~-----~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~~d~-----dl~~lA~~t~G~s----- 387 (437)
T 4b4t_L 323 IIMATNRPD-----TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKTGEF-----DFEAAVKMSDGFN----- 387 (437)
T ss_dssp EEEEESSTT-----SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBCSCC-----CHHHHHHTCCSCC-----
T ss_pred EEEecCCch-----hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCCccc-----CHHHHHHhCCCCC-----
Confidence 999999998 89999998 6996 9999999999999999888765433222 3577788877665
Q ss_pred chhHHHHHHHHHHHhHH
Q psy14504 253 PDKAIDLIDEAAAKIKI 269 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~~ 269 (951)
++++..++.+|+..+..
T Consensus 388 GADi~~l~~eA~~~air 404 (437)
T 4b4t_L 388 GADIRNCATEAGFFAIR 404 (437)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 78899999888766543
No 16
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.91 E-value=3.6e-23 Score=231.40 Aligned_cols=202 Identities=18% Similarity=0.198 Sum_probs=162.4
Q ss_pred hcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
..-+|+++.|.++.++.+...+. ...++++|||||||||||++|+++|+++ +.+++.
T Consensus 167 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~----------~~~~~~ 236 (428)
T 4b4t_K 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANST----------KAAFIR 236 (428)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHH----------TCEEEE
T ss_pred CCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCeEE
Confidence 34589999999988887766442 3567889999999999999999999999 999999
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC---Cchh---HHhhhhhhc----cCCcEE
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSID---AGNMLKPEL----SRGELH 175 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~---~~~~L~~~l----e~~~i~ 175 (951)
++++.+. ++|.|+++..++.+|..|+. ..|||+||||+|.+++.+... ++.. ..+.|+..| ....++
T Consensus 237 v~~~~l~--~~~~Ge~e~~ir~lF~~A~~-~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~ 313 (428)
T 4b4t_K 237 VNGSEFV--HKYLGEGPRMVRDVFRLARE-NAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVK 313 (428)
T ss_dssp EEGGGTC--CSSCSHHHHHHHHHHHHHHH-TCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEE
T ss_pred Eecchhh--ccccchhHHHHHHHHHHHHH-cCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEE
Confidence 9999988 78999999999999999984 469999999999999876422 1222 233444444 356799
Q ss_pred EEEeecchHHHHhhhcCHHHhh--cceE-EEee-CCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 176 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVE-EPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 176 vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~-~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
||+|||.++ .+||+++| ||+. |+|+ .|+.++|..||+.++........ ..+..++..+.+|.
T Consensus 314 vI~aTN~~~-----~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~~~-----~dl~~lA~~t~G~s---- 379 (428)
T 4b4t_K 314 VIMATNRAD-----TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLAPE-----ADLDSLIIRNDSLS---- 379 (428)
T ss_dssp EEEEESCSS-----SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBCTT-----CCHHHHHHHTTTCC----
T ss_pred EEEecCChh-----hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCCcc-----cCHHHHHHHCCCCC----
Confidence 999999998 89999999 9996 9996 79999999999988876443222 23677888877765
Q ss_pred CchhHHHHHHHHHHHhH
Q psy14504 252 MPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~~~ 268 (951)
++++..++.+|+..+.
T Consensus 380 -gadi~~l~~eA~~~a~ 395 (428)
T 4b4t_K 380 -GAVIAAIMQEAGLRAV 395 (428)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 7888899988876554
No 17
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.90 E-value=3.8e-23 Score=231.52 Aligned_cols=142 Identities=18% Similarity=0.284 Sum_probs=115.7
Q ss_pred CCeEEEEccccccCH------------HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHH
Q psy14504 542 PYSLILLDEIEKANS------------DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIK 609 (951)
Q Consensus 542 ~~~vl~iDEid~~~~------------~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~ 609 (951)
+++|||+||||+++. .+|++||++||........ ..++.++++||+|+.+.....
T Consensus 250 ~~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~-~~~d~~~ilfI~~gaf~~~~~------------ 316 (444)
T 1g41_A 250 QNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKH-GMVKTDHILFIASGAFQVARP------------ 316 (444)
T ss_dssp HHCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETT-EEEECTTCEEEEEECCSSCCG------------
T ss_pred cCCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhccccccccc-ceecCCcEEEEeccccccCCh------------
Confidence 457999999999863 3899999999976555433 568899999999985543211
Q ss_pred HHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHH----HHHHHHHHHHHhcCCccccchHHHHHHHHhcc-----c
Q psy14504 610 LAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNIGF-----D 680 (951)
Q Consensus 610 ~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~-----~ 680 (951)
..+.|+|++||+.+|.|++|+.+++.+|+. ..+.++...+...++.+.++++++..|++..+ .
T Consensus 317 --------~dlipel~~R~~i~i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t 388 (444)
T 1g41_A 317 --------SDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKT 388 (444)
T ss_dssp --------GGSCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHS
T ss_pred --------hhcchHHhcccceeeeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCC
Confidence 125699999999899999999999999994 45667777778889999999999999998654 4
Q ss_pred ccccccccccchHHHHHHHHhhcccCC
Q psy14504 681 LIYGARDVHGCKKSLSILLKKIHKKSP 707 (951)
Q Consensus 681 ~~~g~~dlhg~~~~l~~~l~~~~~~~~ 707 (951)
+..|+|.++.. ++++++++.|.-+
T Consensus 389 ~~~GaR~L~~~---ie~~~~~~~~~~~ 412 (444)
T 1g41_A 389 ENIGARRLHTV---MERLMDKISFSAS 412 (444)
T ss_dssp CCCGGGHHHHH---HHHHHHHHHHHGG
T ss_pred ccCCchHHHHH---HHHHHHHHHhhcc
Confidence 88999999999 9999988888643
No 18
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.90 E-value=3.1e-23 Score=210.41 Aligned_cols=193 Identities=72% Similarity=1.185 Sum_probs=165.9
Q ss_pred hhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeE
Q psy14504 24 IGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKI 103 (951)
Q Consensus 24 ~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~ 103 (951)
++.|++++.+|+++++|..|++++|+++.++.+...+....+.+++|+||||||||++|+++++.+.....+....+.++
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~ 81 (195)
T 1jbk_A 2 MQALKKYTIDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRV 81 (195)
T ss_dssp CHHHHHHEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEE
T ss_pred chHHHHHhHHHHHHHhhccccccccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcE
Confidence 57899999999999999999999999999999999998888889999999999999999999999877666665667899
Q ss_pred EEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecch
Q psy14504 104 LLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN 183 (951)
Q Consensus 104 ~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~ 183 (951)
+.+++..+..+..+.+.....+..++..+....++.||||||+|.+.+.+.........+.|+.+++.+.+.+|++|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~i~~~~~~ 161 (195)
T 1jbk_A 82 LALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALARGELHCVGATTLD 161 (195)
T ss_dssp EEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHTTSCCEEEEECHH
T ss_pred EEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhccCCeEEEEeCCHH
Confidence 99999888766667788888888898887766778899999999998655444445667788888888999999999999
Q ss_pred HHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHH
Q psy14504 184 EYRQYIEKDAAFERRFQKILVEEPDIEETISIL 216 (951)
Q Consensus 184 ~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il 216 (951)
++.....+++++.+||..+.|++|+.+++.+||
T Consensus 162 ~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 162 EYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 877777889999999999999999999998875
No 19
>2z72_A Protein-tyrosine-phosphatase; cold-active enzyme, psychrophIle, hydrolase; 1.10A {Shewanella SP} PDB: 1v73_A 2zbm_A
Probab=99.90 E-value=1.9e-23 Score=230.18 Aligned_cols=227 Identities=22% Similarity=0.378 Sum_probs=153.5
Q ss_pred cccccccccccchHHHHHHHHhhcccC-------CccceeecccccCCcceEehhHHHHHhcC-------CccEEEcCCC
Q psy14504 680 DLIYGARDVHGCKKSLSILLKKIHKKS-------PEANFIFLGDLINKGPQSLDTLRMVYSMR-------NYAKIVLGNH 745 (951)
Q Consensus 680 ~~~~g~~dlhg~~~~l~~~l~~~~~~~-------~~~~li~~gd~~~~g~~~~~~l~~~~~~~-------~~~~~v~GNH 745 (951)
.+.+.++||||++..|.++++.+++.+ ..+.++++||++|||+.+.+|++++++++ ..+++|+|||
T Consensus 71 ~~i~vigDiHG~~~~l~~ll~~~~~~~~~~~~~~~~d~~v~lGD~vdrG~~s~evl~~l~~l~~~~~~~~~~v~~v~GNH 150 (342)
T 2z72_A 71 KKVVALSDVHGQYDVLLTLLKKQKIIDSDGNWAFGEGHMVMTGDIFDRGHQVNEVLWFMYQLDQQARDAGGMVHLLMGNH 150 (342)
T ss_dssp CEEEEECCCTTCHHHHHHHHHHTTSBCTTSCBCCTTCEEEECSCCSSSSSCHHHHHHHHHHHHHHHHHTTCEEEECCCHH
T ss_pred CCEEEEECCCCCHHHHHHHHHhcCCCcccccccCCCCEEEEECCCcCCCCCHHHHHHHHHHHHHHHhhCCCeEEEEecCC
Confidence 356889999999999999999888753 35889999999999999999999998864 4689999999
Q ss_pred hHHHHHHHhhcccCCccccHHHhhCC------CCHHHHHHHHhcCCceEEeCCEEEEecccCcCC-----CHHHHHHHhH
Q psy14504 746 EIHLLDVLININKKSKLDTFDDILDA------PDKKKLVSWLRTQPLAIYYKKYLMIHAGVAKQW-----TAQQTIKLSH 814 (951)
Q Consensus 746 e~~~l~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~~p~~~~~~~~~~vHAG~~p~~-----~~~~~~~~~~ 814 (951)
|.+++...... .........+.+.. ....++.+||+++|+++..++++|||||+.|.| +.++...+.+
T Consensus 151 E~~~l~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~lP~~~~~~~~~~vHgGl~p~~~~~~~~l~~i~~~~r 229 (342)
T 2z72_A 151 EQMVLGGDLRY-VHQRYDIATTLINRPYNKLYSADTEIGQWLRSKNTIIKINDVLYMHGGISSEWISRELTLDKANALYR 229 (342)
T ss_dssp HHHHHHTCCTT-SCTTHHHHHHHTTSCGGGGGSTTBHHHHHHHTCCSEEEETTEEEESSCCCHHHHHTTCCHHHHHHHHH
T ss_pred cHHHhhCcccc-cccccchHHHHhcccHHHHHHHhHHHHHHHhhCCeEEEECCEEEEECCCChhhcccCCCHHHHHHHhh
Confidence 99988631110 00011111111111 012478999999999999999999999999987 5555444433
Q ss_pred HH----HHHhhcccHHhHHHHhcCCCCCCCCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCC
Q psy14504 815 QV----EKILRTSYWKNLFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNY 890 (951)
Q Consensus 815 ~~----~~~l~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~ 890 (951)
.. +..+.. ..+..-+|.+.+..|.+....... +.+. .+..
T Consensus 230 ~~~~~~~~~~~~---~~~~~~lwsd~~~~w~R~~~~~~f-g~~~--------------------------------~~~f 273 (342)
T 2z72_A 230 ANVDASKKSLKA---DDLLNFLFFGNGPTWYRGYFSETF-TEAE--------------------------------LDTI 273 (342)
T ss_dssp HHTTSCHHHHHH---SHHHHHHHSTTSTTTCCGGGSTTC-CHHH--------------------------------HHHH
T ss_pred hhcccccccccc---CHHHHhccCCCCCCCcCCcccccC-ChHH--------------------------------HHHH
Confidence 21 111111 112234566666677654310000 0000 0001
Q ss_pred CCcccCCCCCCCCceEEEccCCCCCcc--cCCCeEEcccccccCCeEEEEEecCCceEEeec
Q psy14504 891 IPWFDLPNRKTIDITVLFGHWSTLGLI--MKPNIICLDTGCVWGNKLTALCLEDRSIIQVNN 950 (951)
Q Consensus 891 ~~W~~~~~~~~~~~~vv~GH~~~~~~~--~~~~~~~lDtG~v~gg~Ltal~l~~~~~~~v~~ 950 (951)
.+|+ +...||+|||++.+.. ..++++.|||||+|||+|+++++++++++++++
T Consensus 274 l~~~-------~~~~IV~GHt~~~~~~~~~~~~~i~Idsg~~~gg~la~l~i~~~~~~~v~~ 328 (342)
T 2z72_A 274 LQHF-------NVNHIVVGHTSQERVLGLFHNKVIAVDSSIKVGKSGELLLLENNRLIRGLY 328 (342)
T ss_dssp HHHH-------TCSEEEECSSCCSSCEEETTTTEEECCCCGGGSSCCCEEEEETTEEEEECT
T ss_pred HHHC-------CCcEEEECCCcccchhhhcCCCEEEEECCCCCCCcEEEEEEECCEEEEEec
Confidence 1121 2468999999998643 457899999999999999999999999998864
No 20
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.88 E-value=1.7e-22 Score=203.81 Aligned_cols=185 Identities=64% Similarity=1.099 Sum_probs=159.7
Q ss_pred hhHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeE
Q psy14504 24 IGYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKI 103 (951)
Q Consensus 24 ~~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~ 103 (951)
+++|++++.+|.++++|..|++++|++.+++.+...+......+++|+||||||||++|+++++.+.....|....+.++
T Consensus 2 ~~~l~~~~~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~ 81 (187)
T 2p65_A 2 YQALEKYSRDLTALARAGKLDPVIGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKL 81 (187)
T ss_dssp -CCTTTTEEEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEE
T ss_pred chHHHHHHHHHHHHHhccccchhhcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeE
Confidence 56789999999999999999999999999999999998888889999999999999999999999977666666668899
Q ss_pred EEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCC-CCCchhHHhhhhhhccCCcEEEEEeecc
Q psy14504 104 LLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGK-VEGSIDAGNMLKPELSRGELHCIGATTL 182 (951)
Q Consensus 104 ~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~-~~~~~~~~~~L~~~le~~~i~vI~at~~ 182 (951)
+.+++..+..+..+.+.....+..++..+....++.||||||+|.+.+.+. .....++.+.|+..++.+.+.+|++||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~~~~~ 161 (187)
T 2p65_A 82 VSLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLARGELRCIGATTV 161 (187)
T ss_dssp EEECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHTTCSCEEEEECH
T ss_pred EEEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhcCCeeEEEecCH
Confidence 999988877656667777888888888887666788999999999976543 3334567778888889999999999999
Q ss_pred hHHHHhhhcCHHHhhcceEEEeeCCC
Q psy14504 183 NEYRQYIEKDAAFERRFQKILVEEPD 208 (951)
Q Consensus 183 ~~~~~~~~~~~~l~~Rf~~i~~~~p~ 208 (951)
+++.....+++++.+||..+.+++|+
T Consensus 162 ~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 162 SEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred HHHHHHHhccHHHHHhcCcccCCCCC
Confidence 98776678899999999999999886
No 21
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.88 E-value=1.8e-22 Score=227.55 Aligned_cols=255 Identities=22% Similarity=0.359 Sum_probs=171.4
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHH----HhhhcCC-------C----------CCCCCceEEEEeCCCCCcHHHHHHH
Q psy14504 431 LLNIENLLCKRVVGQDEAISAVSNAI----RRSRSGL-------S----------DAKRPYGSFMFLGPTGVGKTELCKT 489 (951)
Q Consensus 431 l~~l~~~l~~~v~Gq~~~~~~l~~~~----~~~~~~~-------~----------~~~~p~~~~Ll~GppGtGKT~lA~~ 489 (951)
+.++.+.|.+.|+||+.+++.+..++ .+.+.+. . ....+..++||+||||||||++|++
T Consensus 12 ~~~l~~~L~~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~ 91 (376)
T 1um8_A 12 PKELKAVLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQT 91 (376)
T ss_dssp HHHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHH
T ss_pred HHHHHHHHhhHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHH
Confidence 45677889999999999999999887 3332221 0 0112334799999999999999999
Q ss_pred HHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHH-------HhCCCeEEEEccccccCHH-----
Q psy14504 490 LSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIV-------RRKPYSLILLDEIEKANSD----- 557 (951)
Q Consensus 490 la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~-------~~~~~~vl~iDEid~~~~~----- 557 (951)
+|+.+ +.+++.+++..+.. .+|.|....+.+...+ ..+.++||||||++++++.
T Consensus 92 la~~l---~~~~~~~~~~~~~~-----------~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~ 157 (376)
T 1um8_A 92 LAKHL---DIPIAISDATSLTE-----------AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRS 157 (376)
T ss_dssp HHHHT---TCCEEEEEGGGCC-------------------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------
T ss_pred HHHHh---CCCEEEecchhhhh-----------cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCc
Confidence 99998 67899999877643 2355655444444443 2346799999999999988
Q ss_pred ---------HHHHHHHHhhcceee--cCCCeE--------eecCCeEEEEecCCCc-h-hhhhhc-----c--c------
Q psy14504 558 ---------VFNILLQILDDGRLT--DNRGRT--------INFRNTIIVMTSNLGS-D-KIKEME-----K--G------ 603 (951)
Q Consensus 558 ---------~~~~Ll~~le~g~~~--~~~g~~--------~~~~~~iiI~ttn~~~-~-~~~~~~-----~--~------ 603 (951)
+++.|+++|+++.+. +..+.. +...++++|+|+|... + .+.+.+ + .
T Consensus 158 ~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~ 237 (376)
T 1um8_A 158 ITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKK 237 (376)
T ss_dssp ------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTT
T ss_pred eecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhcc
Confidence 999999999977542 333332 4456677777777421 0 010000 0 0
Q ss_pred cHHHHHHH-HH-HHHHhccChhHhhccCcEEEecCCChhhHHHHHH----HHHHHHHHHHHhcCCccccchHHHHHHHHh
Q psy14504 604 DKEIIKLA-VM-NEVKIYFRPEFINRIDDIIVFRYLNRKNILSIAN----IQLNILKNKLLKMNMDLKISKAALKKISNI 677 (951)
Q Consensus 604 ~~~~~~~~-~~-~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 677 (951)
.+..+... .. +.....|.|+|++||+.++.|+|++.+++.+|+. ..+.++...+...+..+.++++++++|+..
T Consensus 238 ~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~ 317 (376)
T 1um8_A 238 EQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQL 317 (376)
T ss_dssp TTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHH
T ss_pred chhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHH
Confidence 00000000 00 1124468999999999999999999999999998 466666667766677789999999999998
Q ss_pred cccccccccccccchHHHHHHHHhh
Q psy14504 678 GFDLIYGARDVHGCKKSLSILLKKI 702 (951)
Q Consensus 678 ~~~~~~g~~dlhg~~~~l~~~l~~~ 702 (951)
+|.+.+|+|.+.+. +++++...
T Consensus 318 ~~~~~~~~R~L~~~---le~~~~~~ 339 (376)
T 1um8_A 318 ALERKTGARGLRAI---IEDFCLDI 339 (376)
T ss_dssp HHHTTCTGGGHHHH---HHHHHHHH
T ss_pred hcccccCcHHHHHH---HHHHHHHH
Confidence 88888999999998 77766543
No 22
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.88 E-value=1.4e-21 Score=215.02 Aligned_cols=207 Identities=20% Similarity=0.301 Sum_probs=167.0
Q ss_pred hHHHHhcCCCCCccccHHHHHHHHHHHH------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14504 34 LTEKARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 101 (951)
Q Consensus 34 l~e~~rp~~l~~lvG~~~~i~~l~~~l~------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~ 101 (951)
+..++.+.+|++++|++..++.+...+. ...+.++||+||||||||++|+++|+++ +.
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~----------~~ 77 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA----------NS 77 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH----------TC
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH----------CC
Confidence 4456678899999999999999888662 2335689999999999999999999998 88
Q ss_pred eEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC---CchhHHhhhhhhc-----cCCc
Q psy14504 102 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSIDAGNMLKPEL-----SRGE 173 (951)
Q Consensus 102 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~~~~~L~~~l-----e~~~ 173 (951)
+++.++++.+. +.+.|+.+..++.+|..+.. ..|+||||||+|.|.+.+... ......+.++..+ ....
T Consensus 78 ~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 154 (322)
T 3eie_A 78 TFFSVSSSDLV--SKWMGESEKLVKQLFAMARE-NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGNDSQG 154 (322)
T ss_dssp EEEEEEHHHHH--TTTGGGHHHHHHHHHHHHHH-TSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGTSCCC
T ss_pred CEEEEchHHHh--hcccchHHHHHHHHHHHHHh-cCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccccCCc
Confidence 99999998887 57889999999999999984 458999999999998754321 2233444555544 3467
Q ss_pred EEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 174 LHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 174 i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
++||++||.+. .++++++|||.. +.++.|+.++|..|++.++.. .+..+++..+..++..+.+|.
T Consensus 155 v~vi~atn~~~-----~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~----~~~~~~~~~l~~la~~t~g~s----- 220 (322)
T 3eie_A 155 VLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPCVLTKEDYRTLGAMTEGYS----- 220 (322)
T ss_dssp EEEEEEESCGG-----GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTT----CCCCCCHHHHHHHHHTTTTCC-----
T ss_pred eEEEEecCChh-----hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhcc----CCCCCCHHHHHHHHHHcCCCC-----
Confidence 99999999998 899999999986 999999999999999988764 355678899999999987766
Q ss_pred chhHHHHHHHHHHHh
Q psy14504 253 PDKAIDLIDEAAAKI 267 (951)
Q Consensus 253 p~~a~~ll~~a~~~~ 267 (951)
++++..++..|+..+
T Consensus 221 g~di~~l~~~a~~~a 235 (322)
T 3eie_A 221 GSDIAVVVKDALMQP 235 (322)
T ss_dssp HHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 677788887775443
No 23
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.87 E-value=2.4e-21 Score=215.65 Aligned_cols=217 Identities=19% Similarity=0.273 Sum_probs=159.8
Q ss_pred hHHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHH------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcC
Q psy14504 25 GYLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIING 92 (951)
Q Consensus 25 ~~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~ 92 (951)
...+.+...+..++++.+|++++|++.+++.+...+. ...+.++||+||||||||++|+++|+.+
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~--- 108 (355)
T 2qp9_X 32 KLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA--- 108 (355)
T ss_dssp ---------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---
T ss_pred HHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---
Confidence 3344444556777889999999999999988887652 2345689999999999999999999999
Q ss_pred CCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC---chhHHhhhhhhc
Q psy14504 93 EVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDAGNMLKPEL 169 (951)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~l 169 (951)
+.+++.+++..+. ..+.|+.+..++.+|..+.. ..|+||||||+|.|.+.+.... ...+.+.|+..+
T Consensus 109 -------~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l 178 (355)
T 2qp9_X 109 -------NSTFFSVSSSDLV--SKWMGESEKLVKQLFAMARE-NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQM 178 (355)
T ss_dssp -------TCEEEEEEHHHHH--SCC---CHHHHHHHHHHHHH-TSSEEEEEECGGGGTC------CTHHHHHHHHHHHHH
T ss_pred -------CCCEEEeeHHHHh--hhhcchHHHHHHHHHHHHHH-cCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHh
Confidence 8899999998887 56788889899999998874 4589999999999987543221 123445555555
Q ss_pred c-----CCcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHh
Q psy14504 170 S-----RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELS 243 (951)
Q Consensus 170 e-----~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s 243 (951)
+ ...++||++||.++ .++++++|||+. +.++.|+.++|..||+.++.. .+..+++..+..++..+
T Consensus 179 ~~~~~~~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~~~~~~l~~la~~t 249 (355)
T 2qp9_X 179 NGVGNDSQGVLVLGATNIPW-----QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGD----TPSVLTKEDYRTLGAMT 249 (355)
T ss_dssp HHCC---CCEEEEEEESCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----SCBCCCHHHHHHHHHHT
T ss_pred hcccccCCCeEEEeecCCcc-----cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhh----CCCCCCHHHHHHHHHHc
Confidence 3 46799999999998 899999999975 999999999999999988764 24457888999999998
Q ss_pred hhhcccCCCchhHHHHHHHHHHHhH
Q psy14504 244 YRYISDRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 244 ~~~~~~~~~p~~a~~ll~~a~~~~~ 268 (951)
.+|. ++++..+++.|+..+.
T Consensus 250 ~G~s-----g~dl~~l~~~A~~~a~ 269 (355)
T 2qp9_X 250 EGYS-----GSDIAVVVKDALMQPI 269 (355)
T ss_dssp TTCC-----HHHHHHHHHHHHHHHH
T ss_pred CCCC-----HHHHHHHHHHHHHHHH
Confidence 8776 7788888888775543
No 24
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.86 E-value=8.8e-21 Score=208.05 Aligned_cols=203 Identities=20% Similarity=0.278 Sum_probs=162.4
Q ss_pred hcCCCCCccccHHHHHHHHHHHH------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
.+.+|++++|.+.+++.+...+. ...+.++||+||||||||++|+++|+++ .+.+++.+
T Consensus 7 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---------~~~~~~~i 77 (322)
T 1xwi_A 7 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA---------NNSTFFSI 77 (322)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHT---------TSCEEEEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHc---------CCCcEEEE
Confidence 45689999999999888877553 2345789999999999999999999987 25678888
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCc---hhHHhhhhhhc-----cCCcEEEEE
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPEL-----SRGELHCIG 178 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~l-----e~~~i~vI~ 178 (951)
+++.+. ..+.|+.+..++.+|..+.. ..|+||||||+|.+.+.+..... ....+.|+..+ ....+++|+
T Consensus 78 ~~~~l~--~~~~g~~~~~~~~lf~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~~~~~v~vI~ 154 (322)
T 1xwi_A 78 SSSDLV--SKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVDNDGILVLG 154 (322)
T ss_dssp ECCSSC--CSSCCSCHHHHHHHHHHHHH-TSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSSCCTTEEEEE
T ss_pred EhHHHH--hhhhhHHHHHHHHHHHHHHh-cCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccccCCCEEEEE
Confidence 888776 56789999999999999874 45899999999999876543322 22334444444 246799999
Q ss_pred eecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHH
Q psy14504 179 ATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAI 257 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~ 257 (951)
+||.+. .++++++|||+. +.++.|+.++|..|++.++.. .+..+++..+..++..+.+|. ++++.
T Consensus 155 atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~la~~t~G~s-----gadl~ 220 (322)
T 1xwi_A 155 ATNIPW-----VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGT----TQNSLTEADFRELGRKTDGYS-----GADIS 220 (322)
T ss_dssp EESCTT-----TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTT----CCBCCCHHHHHHHHHTCTTCC-----HHHHH
T ss_pred ecCCcc-----cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhc----CCCCCCHHHHHHHHHHcCCCC-----HHHHH
Confidence 999997 899999999975 999999999999999988764 344568889999999987776 67888
Q ss_pred HHHHHHHHHh
Q psy14504 258 DLIDEAAAKI 267 (951)
Q Consensus 258 ~ll~~a~~~~ 267 (951)
.+++.|+..+
T Consensus 221 ~l~~~A~~~a 230 (322)
T 1xwi_A 221 IIVRDALMQP 230 (322)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHHHHHH
Confidence 8888876544
No 25
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.85 E-value=5e-21 Score=208.09 Aligned_cols=227 Identities=16% Similarity=0.237 Sum_probs=173.6
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.++|++.++..+...+...... ..++||+||||||||++|++|++.+...+.+|+.++|+.+......+.++
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~-------~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPS-------DATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCST-------TSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCC-------CCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhc
Confidence 45889999999999988765411 23699999999999999999999887777899999999987766667888
Q ss_pred CCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhh
Q psy14504 520 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 598 (951)
Q Consensus 520 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 598 (951)
|+..| +.|.... ....+..+.+++||||||+.+++..|..|+.+|+++.+....+......++.+|+|||.......
T Consensus 75 g~~~g~~tg~~~~--~~g~~~~a~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn~~l~~~v 152 (304)
T 1ojl_A 75 GHEKGAFTGADKR--REGRFVEADGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAEEV 152 (304)
T ss_dssp CCCSSCCC---CC--CCCHHHHHTTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEESSCHHHHH
T ss_pred CccccccCchhhh--hcCHHHhcCCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecCccHHHHH
Confidence 87654 3343221 22334445578999999999999999999999999877654443334467889999998654321
Q ss_pred hhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCC--hhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Q psy14504 599 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN--RKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 675 (951)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~--~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 675 (951)
. .+.|+++|++||+. .|.++|+. .+|+..++...+.++....... ...+++++++.|.
T Consensus 153 ~-----------------~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~--~~~~s~~a~~~L~ 213 (304)
T 1ojl_A 153 S-----------------AGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKV--VKGFTPQAMDLLI 213 (304)
T ss_dssp H-----------------HTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCC--CCCBCHHHHHHHH
T ss_pred H-----------------hCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccC--ccCCCHHHHHHHH
Confidence 1 45799999999964 58899998 6899999998888776554332 2578999999998
Q ss_pred HhcccccccccccccchHHHHHHH
Q psy14504 676 NIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 676 ~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
. |.|+.++|.+... +++++
T Consensus 214 ~--~~wpGnvReL~~~---l~~~~ 232 (304)
T 1ojl_A 214 H--YDWPGNIRELENA---IERAV 232 (304)
T ss_dssp H--CCCSSHHHHHHHH---HHHHH
T ss_pred c--CCCCCCHHHHHHH---HHHHH
Confidence 8 7778888888887 66655
No 26
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.8e-20 Score=209.03 Aligned_cols=213 Identities=20% Similarity=0.277 Sum_probs=169.3
Q ss_pred HHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHH------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCC
Q psy14504 26 YLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGE 93 (951)
Q Consensus 26 ~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~ 93 (951)
.++.....+.+++++.+|++++|++..++.+...+. ...+.++||+||||||||++|+++|+.+
T Consensus 66 ~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---- 141 (357)
T 3d8b_A 66 MIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---- 141 (357)
T ss_dssp HHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT----
T ss_pred HHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc----
Confidence 344555666677889999999999999998888664 3456789999999999999999999988
Q ss_pred CCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC---chhHHhhhhhhcc
Q psy14504 94 VPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDAGNMLKPELS 170 (951)
Q Consensus 94 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~le 170 (951)
+.+++.++++.+. ..+.|+.+..++.+|..+.. ..++||||||+|.|.+.+.... ....++.|+..++
T Consensus 142 ------~~~~~~i~~~~l~--~~~~g~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~ 212 (357)
T 3d8b_A 142 ------GATFFSISASSLT--SKWVGEGEKMVRALFAVARC-QQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLD 212 (357)
T ss_dssp ------TCEEEEEEGGGGC--CSSTTHHHHHHHHHHHHHHH-TCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHH
T ss_pred ------CCeEEEEehHHhh--ccccchHHHHHHHHHHHHHh-cCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHh
Confidence 7899999998877 56788888889999988874 4588999999999987543221 2234445555553
Q ss_pred ------CCcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHh
Q psy14504 171 ------RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELS 243 (951)
Q Consensus 171 ------~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s 243 (951)
...++||++||.+. .+++++++||.. +.++.|+.++|..|++.++.. .+..++++.+..++..+
T Consensus 213 ~~~~~~~~~v~vI~atn~~~-----~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~l~~la~~t 283 (357)
T 3d8b_A 213 GATTSSEDRILVVGATNRPQ-----EIDEAARRRLVKRLYIPLPEASARKQIVINLMSK----EQCCLSEEEIEQIVQQS 283 (357)
T ss_dssp C----CCCCEEEEEEESCGG-----GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHT----SCBCCCHHHHHHHHHHT
T ss_pred cccccCCCCEEEEEecCChh-----hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhh----cCCCccHHHHHHHHHHc
Confidence 35799999999987 799999999985 999999999999999988774 35668899999999998
Q ss_pred hhhcccCCCchhHHHHHHHHHH
Q psy14504 244 YRYISDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 244 ~~~~~~~~~p~~a~~ll~~a~~ 265 (951)
.+|. ++++..+++.+..
T Consensus 284 ~G~s-----~~dl~~l~~~a~~ 300 (357)
T 3d8b_A 284 DAFS-----GADMTQLCREASL 300 (357)
T ss_dssp TTCC-----HHHHHHHHHHHHT
T ss_pred CCCC-----HHHHHHHHHHHHH
Confidence 7776 5677777776653
No 27
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.85 E-value=8e-21 Score=208.41 Aligned_cols=232 Identities=22% Similarity=0.404 Sum_probs=172.2
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhh--hcCCCC---CCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14504 432 LNIENLLCKRVVGQDEAISAVSNAIRRS--RSGLSD---AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 506 (951)
Q Consensus 432 ~~l~~~l~~~v~Gq~~~~~~l~~~~~~~--~~~~~~---~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 506 (951)
.++.+.|.+.++||+.+++.+..++... +.++.. +..+..++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 7 ~~l~~~l~~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l---~~~~~~i~~ 83 (310)
T 1ofh_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (310)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEG
T ss_pred HHHHHHHhhhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEEcc
Confidence 4567778899999999999999988752 111110 01122379999999999999999999998 668999999
Q ss_pred ccccchhchhcccCCCCCCccccccchhHHHHHh--------CCCeEEEEccccccCHHH------------HHHHHHHh
Q psy14504 507 SEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR--------KPYSLILLDEIEKANSDV------------FNILLQIL 566 (951)
Q Consensus 507 ~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~--------~~~~vl~iDEid~~~~~~------------~~~Ll~~l 566 (951)
+++... +|+|.+....+...... .+++||||||+|++++.. ++.|+++|
T Consensus 84 ~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~l 152 (310)
T 1ofh_A 84 TKFTEV-----------GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLV 152 (310)
T ss_dssp GGGSSC-----------CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHH
T ss_pred hhcccC-----------CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHh
Confidence 877542 46665544444443322 236899999999998654 99999999
Q ss_pred hcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHH
Q psy14504 567 DDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 646 (951)
Q Consensus 567 e~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~ 646 (951)
+++.+....+ ..+..+++||+++|..... ...+.|+|++||+.++.|+|++.+++.+|+
T Consensus 153 e~~~~~~~~~-~~~~~~~~~i~~~~~~~~~--------------------~~~l~~~l~~R~~~~i~~~~~~~~~~~~il 211 (310)
T 1ofh_A 153 EGSTVSTKHG-MVKTDHILFIASGAFQVAR--------------------PSDLIPELQGRLPIRVELTALSAADFERIL 211 (310)
T ss_dssp HCCEEEETTE-EEECTTCEEEEEECCSSSC--------------------GGGSCHHHHHTCCEEEECCCCCHHHHHHHH
T ss_pred cCCeEecccc-cccCCcEEEEEcCCcccCC--------------------cccCCHHHHhhCCceEEcCCcCHHHHHHHH
Confidence 9877665544 4566788999997653221 124789999999988999999999999999
Q ss_pred H----HHHHHHHHHHHhcCCccccchHHHHHHHHhcccc-----cccccccccchHHHHHHHHh
Q psy14504 647 N----IQLNILKNKLLKMNMDLKISKAALKKISNIGFDL-----IYGARDVHGCKKSLSILLKK 701 (951)
Q Consensus 647 ~----~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~-----~~g~~dlhg~~~~l~~~l~~ 701 (951)
. ..+.++...+...+..+.++++++++|++..|.. .+++|.+.+. +++++..
T Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~---l~~~~~~ 272 (310)
T 1ofh_A 212 TEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTV---MERLMDK 272 (310)
T ss_dssp HSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHH---HHHHSHH
T ss_pred HhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHH---HHHHHHh
Confidence 8 5566666666667777899999999999976543 4677777777 6665543
No 28
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.85 E-value=8.6e-21 Score=214.55 Aligned_cols=206 Identities=24% Similarity=0.356 Sum_probs=157.5
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHH------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcC
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL 99 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~ 99 (951)
..|.++++|.+|++++|++.+++.+...+. .....++||+||||||||++|+++|+.+
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---------- 172 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---------- 172 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT----------
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh----------
Confidence 467778899999999999999999888762 2345789999999999999999999998
Q ss_pred CCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC---chhHHhhhhhhcc------
Q psy14504 100 SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDAGNMLKPELS------ 170 (951)
Q Consensus 100 ~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~le------ 170 (951)
+.+++.++++.+. ..+.|+.+..+..+|..+... .++||||||+|.|+..+.... ...+++.|+..++
T Consensus 173 ~~~~~~v~~~~l~--~~~~g~~~~~~~~~~~~a~~~-~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 173 NATFFNISAASLT--SKYVGEGEKLVRALFAVAREL-QPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp TCEEEEECSCCC---------CHHHHHHHHHHHHHS-SSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred cCcEEEeeHHHhh--ccccchHHHHHHHHHHHHHhc-CCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 8899999988776 567888888899999998744 578999999999976543221 2334445555553
Q ss_pred CCcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhccc
Q psy14504 171 RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISD 249 (951)
Q Consensus 171 ~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~ 249 (951)
...++||++||.++ .+++++++||.. +.|+.|+.++|..||+.++.. .+..++++.+..++..+.+|.
T Consensus 250 ~~~v~vI~atn~~~-----~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~----~~~~l~~~~~~~la~~~~g~~-- 318 (389)
T 3vfd_A 250 DDRVLVMGATNRPQ-----ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCK----QGSPLTQKELAQLARMTDGYS-- 318 (389)
T ss_dssp --CEEEEEEESCGG-----GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTT----SCCCSCHHHHHHHHHHTTTCC--
T ss_pred CCCEEEEEecCCch-----hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCCC--
Confidence 45799999999987 899999999985 999999999999999988764 467789999999999988876
Q ss_pred CCCchhHHHHHHHHH
Q psy14504 250 RFMPDKAIDLIDEAA 264 (951)
Q Consensus 250 ~~~p~~a~~ll~~a~ 264 (951)
+.++..++..+.
T Consensus 319 ---~~~l~~L~~~a~ 330 (389)
T 3vfd_A 319 ---GSDLTALAKDAA 330 (389)
T ss_dssp ---HHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHH
Confidence 445555555544
No 29
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.85 E-value=1.6e-21 Score=228.52 Aligned_cols=254 Identities=20% Similarity=0.309 Sum_probs=173.4
Q ss_pred hHHHHHHHHhhCCCCcccchHHHHHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHH
Q psy14504 406 EEIAEIVSRTTGIPVSKIVQVEREKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTE 485 (951)
Q Consensus 406 ~~i~~~~~~~~~~p~~~~~~~~~~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~ 485 (951)
..+..++++++++||........ .+.++++.|.+.++|++++++.+...+......... +..+++|+||||||||+
T Consensus 48 ~~~~~~l~~~~~lp~~~~~~~~~-~~~~~~~~l~~di~G~~~vk~~i~~~~~l~~~~~~~---~g~~vll~Gp~GtGKTt 123 (543)
T 3m6a_A 48 SVIRNYIDWLVALPWTDETDDKL-DLKEAGRLLDEEHHGLEKVKERILEYLAVQKLTKSL---KGPILCLAGPPGVGKTS 123 (543)
T ss_dssp THHHHHHHHHHHSCSSCCCCCCC-CTTTGGGTHHHHCSSCHHHHHHHHHHHHHHHHSSSC---CSCEEEEESSSSSSHHH
T ss_pred hHHHHHHHHHhcCCCCccccccc-cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhcccC---CCCEEEEECCCCCCHHH
Confidence 34566888889999876554321 244556678889999999999998877654443333 23479999999999999
Q ss_pred HHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhC--CCeEEEEccccccCHH----HH
Q psy14504 486 LCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK--PYSLILLDEIEKANSD----VF 559 (951)
Q Consensus 486 lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~--~~~vl~iDEid~~~~~----~~ 559 (951)
+|++||..+ +.++..+++..+.. ...++|....|+|...+... ..+..+ .++|+||||||++++. .+
T Consensus 124 lar~ia~~l---~~~~~~i~~~~~~~---~~~~~g~~~~~ig~~~~~~~-~~~~~a~~~~~vl~lDEid~l~~~~~~~~~ 196 (543)
T 3m6a_A 124 LAKSIAKSL---GRKFVRISLGGVRD---ESEIRGHRRTYVGAMPGRII-QGMKKAGKLNPVFLLDEIDKMSSDFRGDPS 196 (543)
T ss_dssp HHHHHHHHH---TCEEEEECCCC-----------------------CHH-HHHHTTCSSSEEEEEEESSSCC--------
T ss_pred HHHHHHHhc---CCCeEEEEecccch---hhhhhhHHHHHhccCchHHH-HHHHHhhccCCEEEEhhhhhhhhhhccCHH
Confidence 999999999 66888998877654 34555666667777655332 333332 4579999999999987 56
Q ss_pred HHHHHHhhcce---eecC-CCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEec
Q psy14504 560 NILLQILDDGR---LTDN-RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFR 635 (951)
Q Consensus 560 ~~Ll~~le~g~---~~~~-~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~ 635 (951)
+.|+++|+.+. +.+. .+..+++.+++||+|||... .++|+|++|| .+|.|+
T Consensus 197 ~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~------------------------~l~~aL~~R~-~vi~~~ 251 (543)
T 3m6a_A 197 SAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLA------------------------TIPGPLRDRM-EIINIA 251 (543)
T ss_dssp -CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTT------------------------TSCHHHHHHE-EEEECC
T ss_pred HHHHHHHhhhhcceeecccCCeeecccceEEEeccCccc------------------------cCCHHHHhhc-ceeeeC
Confidence 99999998654 3332 24566778999999999743 4789999999 589999
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCC---ccccchHHHHHHHHhcccccccccccccchHHHHHHHHh
Q psy14504 636 YLNRKNILSIANIQLNILKNKLLKMNM---DLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKK 701 (951)
Q Consensus 636 ~l~~~~~~~i~~~~l~~~~~~~~~~~~---~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~ 701 (951)
+++.++..+|+..++ +...+...++ .+.++++++..|+. .|.|..|+|.+.+. +++++..
T Consensus 252 ~~~~~e~~~Il~~~l--~~~~~~~~~~~~~~i~i~~~~l~~l~~-~~~~~~~vR~L~~~---i~~~~~~ 314 (543)
T 3m6a_A 252 GYTEIEKLEIVKDHL--LPKQIKEHGLKKSNLQLRDQAILDIIR-YYTREAGVRSLERQ---LAAICRK 314 (543)
T ss_dssp CCCHHHHHHHHHHTH--HHHHHHHTTCCGGGCEECHHHHHHHHH-HHCCCSSSHHHHHH---HHHHHHH
T ss_pred CCCHHHHHHHHHHHH--HHHHHHHcCCCcccccCCHHHHHHHHH-hCChhhchhHHHHH---HHHHHHH
Confidence 999999999998877 3333444444 57889999999887 68888999999988 5554443
No 30
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.84 E-value=2.8e-20 Score=212.01 Aligned_cols=201 Identities=20% Similarity=0.297 Sum_probs=162.2
Q ss_pred cchHHHHhcCCCCCccccHHHH---HHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEI---RRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i---~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
.||.+++||.+|+++||++..+ ..+...+.....+++||+||||||||++|+++|+.+ +.+++.++.
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~----------~~~f~~l~a 83 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYA----------NADVERISA 83 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHT----------TCEEEEEET
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEEe
Confidence 6999999999999999999999 788888888888899999999999999999999988 778887764
Q ss_pred hhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHH
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEY 185 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~ 185 (951)
... ....++.++..+. ....+.||||||+|.+.. ..++.|++.++.+.+++|++|+.+.
T Consensus 84 ~~~---------~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~--------~~q~~LL~~le~~~v~lI~att~n~- 145 (447)
T 3pvs_A 84 VTS---------GVKEIREAIERARQNRNAGRRTILFVDEVHRFNK--------SQQDAFLPHIEDGTITFIGATTENP- 145 (447)
T ss_dssp TTC---------CHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------CCHHHHHTTSCEEEEEESSCG-
T ss_pred ccC---------CHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH--------HHHHHHHHHHhcCceEEEecCCCCc-
Confidence 321 1123455555543 234578999999999954 3456799999999999999997765
Q ss_pred HHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhh---cCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHH
Q psy14504 186 RQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVH---HGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 262 (951)
Q Consensus 186 ~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~---~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 262 (951)
...+++++.+||..+.|++|+.+++..+++..+...... .++.++++++..++..+.+.+ +.+.++++.
T Consensus 146 --~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~------R~lln~Le~ 217 (447)
T 3pvs_A 146 --SFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDA------RRALNTLEM 217 (447)
T ss_dssp --GGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCH------HHHHHHHHH
T ss_pred --ccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCH------HHHHHHHHH
Confidence 347899999999999999999999999999888764322 457799999999999988876 889999998
Q ss_pred HHHHhH
Q psy14504 263 AAAKIK 268 (951)
Q Consensus 263 a~~~~~ 268 (951)
++..+.
T Consensus 218 a~~~a~ 223 (447)
T 3pvs_A 218 MADMAE 223 (447)
T ss_dssp HHHHSC
T ss_pred HHHhcc
Confidence 887654
No 31
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.84 E-value=5e-20 Score=200.73 Aligned_cols=213 Identities=23% Similarity=0.301 Sum_probs=165.5
Q ss_pred HHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHc------------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCC
Q psy14504 27 LKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQR------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEV 94 (951)
Q Consensus 27 l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~------------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~ 94 (951)
.+-....|.+++++.+|++++|++..++.+...+.. ..+.++||+||||||||++|+++|+.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~----- 78 (297)
T 3b9p_A 4 VQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC----- 78 (297)
T ss_dssp HHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT-----
T ss_pred HHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh-----
Confidence 344455677788899999999999999988876532 346789999999999999999999988
Q ss_pred CCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC---chhHHhhhhhhcc-
Q psy14504 95 PNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDAGNMLKPELS- 170 (951)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~le- 170 (951)
+.+++.++++.+. ..+.|+.+..++.+|..+.. ..|+||||||+|.+........ .....+.|+..++
T Consensus 79 -----~~~~~~i~~~~l~--~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~ 150 (297)
T 3b9p_A 79 -----SATFLNISAASLT--SKYVGDGEKLVRALFAVARH-MQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDG 150 (297)
T ss_dssp -----TCEEEEEESTTTS--SSSCSCHHHHHHHHHHHHHH-TCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHH
T ss_pred -----CCCeEEeeHHHHh--hcccchHHHHHHHHHHHHHH-cCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhc
Confidence 7889999988776 55778888888999988874 4588999999999987653221 2234444444443
Q ss_pred ------CCcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHh
Q psy14504 171 ------RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELS 243 (951)
Q Consensus 171 ------~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s 243 (951)
...+++|++||.++ .+++++++||.. +.++.|+.++|..|++.++... +..++++++..++..+
T Consensus 151 ~~~~~~~~~v~vi~~tn~~~-----~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~----~~~~~~~~~~~la~~~ 221 (297)
T 3b9p_A 151 LPGNPDGDRIVVLAATNRPQ-----ELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQ----GSPLDTEALRRLAKIT 221 (297)
T ss_dssp CC------CEEEEEEESCGG-----GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGG----SCCSCHHHHHHHHHHT
T ss_pred ccccCCCCcEEEEeecCChh-----hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhc----CCCCCHHHHHHHHHHc
Confidence 14689999999987 799999999975 9999999999999999887753 4567899999999988
Q ss_pred hhhcccCCCchhHHHHHHHHHHH
Q psy14504 244 YRYISDRFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 244 ~~~~~~~~~p~~a~~ll~~a~~~ 266 (951)
.+|. +.+...+++.++..
T Consensus 222 ~g~~-----~~~l~~l~~~a~~~ 239 (297)
T 3b9p_A 222 DGYS-----GSDLTALAKDAALE 239 (297)
T ss_dssp TTCC-----HHHHHHHHHHHTTH
T ss_pred CCCC-----HHHHHHHHHHHHHH
Confidence 7765 44566677666543
No 32
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.84 E-value=3.2e-20 Score=198.66 Aligned_cols=226 Identities=16% Similarity=0.235 Sum_probs=164.4
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.++|++.++..+...+...... ..++||+||||||||++|+++++.+...+.+++.++|+.+......+.++
T Consensus 6 ~~~ig~~~~~~~~~~~~~~~~~~-------~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~~~~~l~ 78 (265)
T 2bjv_A 6 DNLLGEANSFLEVLEQVSHLAPL-------DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLLDSELF 78 (265)
T ss_dssp ----CCCHHHHHHHHHHHHHTTS-------CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHHHHHHHH
T ss_pred ccceeCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhHHHHHhc
Confidence 45789999999988887764321 13699999999999999999999987666799999999987655556777
Q ss_pred CCCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhh
Q psy14504 520 GAPPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIK 598 (951)
Q Consensus 520 g~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~ 598 (951)
|...+ +.|.... ....+..+.+++|||||++.+++.+|+.|+++|+++.+....+......++.+|+|||.....+.
T Consensus 79 g~~~~~~~g~~~~--~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~iI~atn~~~~~~~ 156 (265)
T 2bjv_A 79 GHEAGAFTGAQKR--HPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGSQPLQVNVRLVCATNADLPAMV 156 (265)
T ss_dssp CCC---------C--CCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC--CEECCCEEEEEESSCHHHHH
T ss_pred CCccccccccccc--ccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCcccccCCeEEEEecCcCHHHHH
Confidence 76543 3333221 12334455678999999999999999999999999887654444444567889999998654331
Q ss_pred hhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCcc--ccchHHHHH
Q psy14504 599 EMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDL--KISKAALKK 673 (951)
Q Consensus 599 ~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l--~~~~~~~~~ 673 (951)
. .+.|+++|++||+. .+.++|++. +++..++...+.++... .+... .++++++++
T Consensus 157 ~-----------------~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~---~~~~~~~~~~~~a~~~ 216 (265)
T 2bjv_A 157 N-----------------EGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCRE---IKLPLFPGFTERARET 216 (265)
T ss_dssp H-----------------HTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHH---TTCSSCCCBCHHHHHH
T ss_pred H-----------------cCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHH---hCCCcccCcCHHHHHH
Confidence 1 35689999999964 789999986 78888888887765543 33333 789999999
Q ss_pred HHHhcccccccccccccchHHHHHHH
Q psy14504 674 ISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 674 L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
|.. |.|..++|.+.+. +++++
T Consensus 217 L~~--~~~~gn~reL~~~---l~~~~ 237 (265)
T 2bjv_A 217 LLN--YRWPGNIRELKNV---VERSV 237 (265)
T ss_dssp HHH--SCCTTHHHHHHHH---HHHHH
T ss_pred HHh--CCCCCCHHHHHHH---HHHHH
Confidence 988 6677888888888 55554
No 33
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.84 E-value=3.5e-21 Score=230.44 Aligned_cols=200 Identities=21% Similarity=0.315 Sum_probs=140.8
Q ss_pred CCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14504 41 GKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 107 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 107 (951)
-+++++.|.++..+.+...+. ...+.++|||||||||||++|+++|.++ +.+++.++
T Consensus 474 v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~----------~~~f~~v~ 543 (806)
T 3cf2_A 474 VTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISIK 543 (806)
T ss_dssp CCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTT----------TCEEEECC
T ss_pred CCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHh----------CCceEEec
Confidence 367788899988888776442 2456789999999999999999999998 89999999
Q ss_pred hhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC------CchhHHhhhhhhcc----CCcEEEE
Q psy14504 108 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE------GSIDAGNMLKPELS----RGELHCI 177 (951)
Q Consensus 108 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~------~~~~~~~~L~~~le----~~~i~vI 177 (951)
.+.+. ++|.|+++..++.+|..|+ ...||||||||+|.+.+.+... .+..+.+.|+..|+ ...++||
T Consensus 544 ~~~l~--s~~vGese~~vr~lF~~Ar-~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi 620 (806)
T 3cf2_A 544 GPELL--TMWFGESEANVREIFDKAR-QAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFII 620 (806)
T ss_dssp HHHHH--TTTCSSCHHHHHHHHHHHH-TTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEE
T ss_pred cchhh--ccccchHHHHHHHHHHHHH-HcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEE
Confidence 99998 7899999999999999998 4469999999999999876421 12235566666664 4679999
Q ss_pred EeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCch
Q psy14504 178 GATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPD 254 (951)
Q Consensus 178 ~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~ 254 (951)
+|||.++ .+|++++| ||+. |+|+.|+.++|.+||+.++++..... +..+..+++.+.+|. +.
T Consensus 621 ~aTN~p~-----~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~~-----~~dl~~la~~t~g~S-----Ga 685 (806)
T 3cf2_A 621 GATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK-----DVDLEFLAKMTNGFS-----GA 685 (806)
T ss_dssp CC-CCSS-----SSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--CC-----C---------------------
T ss_pred EeCCCch-----hCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCCC-----CCCHHHHHHhCCCCC-----HH
Confidence 9999998 89999999 9996 99999999999999988776543322 233567778877765 78
Q ss_pred hHHHHHHHHHHHhH
Q psy14504 255 KAIDLIDEAAAKIK 268 (951)
Q Consensus 255 ~a~~ll~~a~~~~~ 268 (951)
++..++.+|+..+.
T Consensus 686 di~~l~~~A~~~a~ 699 (806)
T 3cf2_A 686 DLTEICQRACKLAI 699 (806)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88888888876543
No 34
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.83 E-value=2.6e-20 Score=213.37 Aligned_cols=211 Identities=19% Similarity=0.263 Sum_probs=159.1
Q ss_pred hcchHHHHhcCCCCCccccHHHHHHHHHHHH------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCc
Q psy14504 31 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL 98 (951)
Q Consensus 31 ~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~ 98 (951)
...+..++++.+|++++|++.+++.+...+. ...+.++||+||||||||++|+++|+.+
T Consensus 121 ~~~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~--------- 191 (444)
T 2zan_A 121 QGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEA--------- 191 (444)
T ss_dssp ---CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHC---------
T ss_pred hcceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHc---------
Confidence 3344455678899999999999988887652 2445789999999999999999999986
Q ss_pred CCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC---chhHHhhhhhhcc-----
Q psy14504 99 LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG---SIDAGNMLKPELS----- 170 (951)
Q Consensus 99 ~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~---~~~~~~~L~~~le----- 170 (951)
.+.+++.++++.+. +.+.|+.+..++.+|..+.. ..|+||||||+|.+.+.+.... ...+.+.|+..++
T Consensus 192 ~~~~~~~v~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~ 268 (444)
T 2zan_A 192 NNSTFFSISSSDLV--SKWLGESEKLVKNLFQLARE-NKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD 268 (444)
T ss_dssp CSSEEEEECCC-----------CCCTHHHHHHHHHH-SCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSCC
T ss_pred CCCCEEEEeHHHHH--hhhcchHHHHHHHHHHHHHH-cCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcccC
Confidence 25678888887776 45778777788999988874 4589999999999987654322 2234455555553
Q ss_pred CCcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhccc
Q psy14504 171 RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISD 249 (951)
Q Consensus 171 ~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~ 249 (951)
...++||+|||.+. .++++++|||+. +.++.|+.++|..|++.++... +..+++..+..++..+.+|.
T Consensus 269 ~~~v~vI~atn~~~-----~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~----~~~l~~~~l~~la~~t~G~s-- 337 (444)
T 2zan_A 269 NDGILVLGATNIPW-----VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGST----QNSLTEADFQELGRKTDGYS-- 337 (444)
T ss_dssp CSSCEEEEEESCGG-----GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTS----CEECCHHHHHHHHHHTTTCC--
T ss_pred CCCEEEEecCCCcc-----ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcC----CCCCCHHHHHHHHHHcCCCC--
Confidence 46799999999997 899999999985 9999999999999999887642 44568889999999988776
Q ss_pred CCCchhHHHHHHHHHHHh
Q psy14504 250 RFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 250 ~~~p~~a~~ll~~a~~~~ 267 (951)
++++..++..|+..+
T Consensus 338 ---gadl~~l~~~a~~~a 352 (444)
T 2zan_A 338 ---GADISIIVRDALMQP 352 (444)
T ss_dssp ---HHHHHHHHHHHHTHH
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 678888888876544
No 35
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.82 E-value=3.8e-21 Score=221.67 Aligned_cols=170 Identities=14% Similarity=0.166 Sum_probs=115.8
Q ss_pred cchHHHHhcCC-CCCccccHHHHHHHHHHH---Hc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 32 IDLTEKARLGK-LDPVIGRDDEIRRAIQVL---QR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 32 ~~l~e~~rp~~-l~~lvG~~~~i~~l~~~l---~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
.+|.+.++|.. |++++|++..++.+..++ .. ..+.++||+||||||||++|+++|+.+.. ..+++.
T Consensus 24 ~~l~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~--------~~~~~~ 95 (456)
T 2c9o_A 24 LGLDESGLAKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGS--------KVPFCP 95 (456)
T ss_dssp CCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCT--------TSCEEE
T ss_pred CCCCcccChhhchhhccCHHHHHHHHHHHHHHHHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCC--------CceEEE
Confidence 45667777774 589999998877655433 33 23468999999999999999999999811 278999
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHH--hcCCCeEEEEecccccccCCCCCCc---h-hHHh----------------
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEIS--NNQKDIIIFIDELHTMIGTGKVEGS---I-DAGN---------------- 163 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~--~~~~~~iL~iDEid~l~~~~~~~~~---~-~~~~---------------- 163 (951)
++++.+. +++.|+.+. +..+|..+. ....|+||||||+|.+++.+..... . ....
T Consensus 96 ~~~~~~~--~~~~~~~~~-~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 172 (456)
T 2c9o_A 96 MVGSEVY--STEIKKTEV-LMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKL 172 (456)
T ss_dssp EEGGGGC--CSSSCHHHH-HHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEE
T ss_pred EeHHHHH--HHhhhhhHH-HHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhh
Confidence 9988887 678899886 889998882 1345899999999999987643311 0 0000
Q ss_pred --hhhhhc-----cCCcEEEE-EeecchHHHHhhhcCHHHhh--cceE---EEeeCCC--HHHHHHHHH
Q psy14504 164 --MLKPEL-----SRGELHCI-GATTLNEYRQYIEKDAAFER--RFQK---ILVEEPD--IEETISILR 217 (951)
Q Consensus 164 --~L~~~l-----e~~~i~vI-~at~~~~~~~~~~~~~~l~~--Rf~~---i~~~~p~--~~er~~il~ 217 (951)
.+...+ ..+.+++| +|||.+. .+++++.| ||+. +.++.|+ .++|.+|++
T Consensus 173 ~~~ll~~l~~~~~~~~~~v~i~attn~~~-----~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~ 236 (456)
T 2c9o_A 173 DPSIFESLQKERVEAGDVIYIEANSGAVK-----RQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQ 236 (456)
T ss_dssp CHHHHHHHHHTTCCTTEEEEEETTTCCEE-----EEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEE
T ss_pred hHHHHHHHhhccCCCCCEEEEEcCCCCcc-----cCChhhcCCcccCcceeEecCCCchhHHHHHHHHH
Confidence 122222 34555555 6666666 78888875 8874 5667774 355555543
No 36
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.82 E-value=6.2e-20 Score=199.78 Aligned_cols=203 Identities=20% Similarity=0.304 Sum_probs=155.4
Q ss_pred HhcCCCCCccccHHHHHHHHHHHHc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEE
Q psy14504 38 ARLGKLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 104 (951)
Q Consensus 38 ~rp~~l~~lvG~~~~i~~l~~~l~~-------------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~ 104 (951)
..+.+|++++|.+..++.+...+.. ..+.++||+||||||||++|+++|+.+ +.+++
T Consensus 9 ~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~----------~~~~i 78 (301)
T 3cf0_A 9 VPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFI 78 (301)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCEEE
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHh----------CCCEE
Confidence 4566899999999998888776542 456789999999999999999999988 78899
Q ss_pred EEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC------CCchhHHhhhhhhcc----CCcE
Q psy14504 105 LLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV------EGSIDAGNMLKPELS----RGEL 174 (951)
Q Consensus 105 ~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~------~~~~~~~~~L~~~le----~~~i 174 (951)
.++++.+. ..+.|+.+..++.+|..+.. ..|+||||||+|.+.+.+.. .......+.|+..++ ...+
T Consensus 79 ~v~~~~l~--~~~~g~~~~~~~~~f~~a~~-~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v 155 (301)
T 3cf0_A 79 SIKGPELL--TMWFGESEANVREIFDKARQ-AAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNV 155 (301)
T ss_dssp EECHHHHH--HHHHTTCTTHHHHHHHHHHH-TCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSE
T ss_pred EEEhHHHH--hhhcCchHHHHHHHHHHHHh-cCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCE
Confidence 99988876 45677777788999999874 45899999999999864321 112234455655553 4579
Q ss_pred EEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 175 HCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 175 ~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
+||+|||.++ .++++++| ||.. ++|+.|+.++|.+|++.++....... +..+..++..+.+|.
T Consensus 156 ~vi~atn~~~-----~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~~-----~~~~~~la~~~~g~s---- 221 (301)
T 3cf0_A 156 FIIGATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAK-----DVDLEFLAKMTNGFS---- 221 (301)
T ss_dssp EEEEEESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCS-----SCCHHHHHHTCSSCC----
T ss_pred EEEEecCCcc-----ccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCCc-----cchHHHHHHHcCCCC----
Confidence 9999999998 79999999 9985 99999999999999998887643221 222455566655554
Q ss_pred CchhHHHHHHHHHHHhH
Q psy14504 252 MPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~~~ 268 (951)
++++..+++.|+..+.
T Consensus 222 -g~dl~~l~~~a~~~a~ 237 (301)
T 3cf0_A 222 -GADLTEICQRACKLAI 237 (301)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 6788888888775543
No 37
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.82 E-value=1.2e-18 Score=188.49 Aligned_cols=204 Identities=24% Similarity=0.343 Sum_probs=159.3
Q ss_pred hcCCCCCccccHHHHHHHHHHHHc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~~-------------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
.+.+|++++|++..++.+...+.. ..+.++||+||||||||++|+++|+.+ +.+++.
T Consensus 12 ~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~----------~~~~~~ 81 (285)
T 3h4m_A 12 PNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET----------NATFIR 81 (285)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT----------TCEEEE
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEE
Confidence 345889999999999988876643 567789999999999999999999998 789999
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC---CchhHHhhhhhhc-------cCCcEE
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSIDAGNMLKPEL-------SRGELH 175 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~~~~~L~~~l-------e~~~i~ 175 (951)
++++.+. ..+.|.....+..+|..+.. ..|+||||||+|.+.+.+... +....+..+..++ ..+.++
T Consensus 82 v~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~ 158 (285)
T 3h4m_A 82 VVGSELV--KKFIGEGASLVKDIFKLAKE-KAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVK 158 (285)
T ss_dssp EEGGGGC--CCSTTHHHHHHHHHHHHHHH-TCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEE
T ss_pred EehHHHH--HhccchHHHHHHHHHHHHHH-cCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEE
Confidence 9988876 56788888899999998874 458899999999998755432 1223334444433 245799
Q ss_pred EEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 176 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 176 vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
+|+|||.++ .+++++++ ||.. +.++.|+.++|.+|++..+...... .+..+..++..+.++.
T Consensus 159 vI~ttn~~~-----~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-----~~~~~~~l~~~~~g~~----- 223 (285)
T 3h4m_A 159 IIGATNRPD-----ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-----EDVNLEEIAKMTEGCV----- 223 (285)
T ss_dssp EEEECSCGG-----GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-----TTCCHHHHHHHCTTCC-----
T ss_pred EEEeCCCch-----hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-----CcCCHHHHHHHcCCCC-----
Confidence 999999988 89999999 9985 9999999999999999887653321 2234567777776654
Q ss_pred chhHHHHHHHHHHHhHHh
Q psy14504 253 PDKAIDLIDEAAAKIKIE 270 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~~~ 270 (951)
++++..++..|...+..+
T Consensus 224 ~~~i~~l~~~a~~~a~~~ 241 (285)
T 3h4m_A 224 GAELKAICTEAGMNAIRE 241 (285)
T ss_dssp HHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 678888888887766544
No 38
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.81 E-value=1.8e-19 Score=198.07 Aligned_cols=189 Identities=28% Similarity=0.389 Sum_probs=140.2
Q ss_pred hccCCChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 510 (951)
.++|.|.+++++.|.+.+... ..|...|+ .+|||||||||||++|+++|..+ +.+|+.++++++.
T Consensus 147 ~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~pr----GvLL~GPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~ 219 (405)
T 4b4t_J 147 YDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPK----GVILYGPPGTGKTLLARAVAHHT---DCKFIRVSGAELV 219 (405)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCC----CEEEESCSSSSHHHHHHHHHHHH---TCEEEEEEGGGGS
T ss_pred HHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCC----ceEEeCCCCCCHHHHHHHHHHhh---CCCceEEEhHHhh
Confidence 367889999999888877542 33554443 59999999999999999999999 8899999999887
Q ss_pred chhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhcceeecC
Q psy14504 511 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDN 574 (951)
Q Consensus 511 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~--------------~~~~~Ll~~le~g~~~~~ 574 (951)
.+ |+|.++. +.++..++...+|||||||+|.+.+ .+.+.||..|+.-.
T Consensus 220 sk------------~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---- 283 (405)
T 4b4t_J 220 QK------------YIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFE---- 283 (405)
T ss_dssp CS------------STTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTT----
T ss_pred cc------------ccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccC----
Confidence 64 7777665 6677778888899999999998742 35677888887411
Q ss_pred CCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 575 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 575 ~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
...++++|+|||.+.. ++|+|+. |||..|.|+.++.++..+|++..++
T Consensus 284 -----~~~~V~vIaATNrpd~------------------------LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~- 333 (405)
T 4b4t_J 284 -----TSKNIKIIMATNRLDI------------------------LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSR- 333 (405)
T ss_dssp -----CCCCEEEEEEESCSSS------------------------SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHT-
T ss_pred -----CCCCeEEEeccCChhh------------------------CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhc-
Confidence 2357889999997553 5788885 9999999999999999999765443
Q ss_pred HHHHHHhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 653 LKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 653 ~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
...+.-.++ ++.|+.. ...|.-.||...
T Consensus 334 ------~~~l~~dvd---l~~lA~~--t~G~SGADi~~l 361 (405)
T 4b4t_J 334 ------KMNLTRGIN---LRKVAEK--MNGCSGADVKGV 361 (405)
T ss_dssp ------TSBCCSSCC---HHHHHHH--CCSCCHHHHHHH
T ss_pred ------CCCCCccCC---HHHHHHH--CCCCCHHHHHHH
Confidence 222111111 5566663 234566677665
No 39
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.81 E-value=9.1e-19 Score=199.36 Aligned_cols=201 Identities=21% Similarity=0.310 Sum_probs=152.6
Q ss_pred CCCCCccccHHHHHHHHHHHH---c---------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 41 GKLDPVIGRDDEIRRAIQVLQ---R---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 41 ~~l~~lvG~~~~i~~l~~~l~---~---------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
.+|++++|.++.++.+..++. . ..+.++||+||||||||++|+++|.++ +.+++.+++
T Consensus 13 ~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~----------~~~f~~is~ 82 (476)
T 2ce7_A 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEA----------NVPFFHISG 82 (476)
T ss_dssp CCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEG
T ss_pred CCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCeeeCCH
Confidence 489999999988777665433 1 245689999999999999999999998 788999998
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC--C-c---hhHHhhhhhhcc----CCcEEEEE
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE--G-S---IDAGNMLKPELS----RGELHCIG 178 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~--~-~---~~~~~~L~~~le----~~~i~vI~ 178 (951)
+.+. ..+.|....+++.+|..+.. ..|+||||||+|.+.+.++.. + . ....+.|+..++ ...++||+
T Consensus 83 ~~~~--~~~~g~~~~~~r~lf~~A~~-~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIa 159 (476)
T 2ce7_A 83 SDFV--ELFVGVGAARVRDLFAQAKA-HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMA 159 (476)
T ss_dssp GGTT--TCCTTHHHHHHHHHHHHHHH-TCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEE
T ss_pred HHHH--HHHhcccHHHHHHHHHHHHh-cCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEE
Confidence 8876 45778888889999999974 459999999999998755321 1 1 124455555553 45799999
Q ss_pred eecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchh
Q psy14504 179 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDK 255 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 255 (951)
+||.++ .++++++| ||+. |.|+.|+.++|.+|++.+++...... +..+..++..+.+|. +++
T Consensus 160 aTn~~~-----~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~~-----~v~l~~la~~t~G~s-----gad 224 (476)
T 2ce7_A 160 ATNRPD-----ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLAE-----DVNLEIIAKRTPGFV-----GAD 224 (476)
T ss_dssp EESCGG-----GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBCT-----TCCHHHHHHTCTTCC-----HHH
T ss_pred ecCChh-----hhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCcc-----hhhHHHHHHhcCCCc-----HHH
Confidence 999998 78999998 9996 99999999999999988776543221 122556677666554 678
Q ss_pred HHHHHHHHHHHhHH
Q psy14504 256 AIDLIDEAAAKIKI 269 (951)
Q Consensus 256 a~~ll~~a~~~~~~ 269 (951)
+..++.+|+..+..
T Consensus 225 L~~lv~~Aal~A~~ 238 (476)
T 2ce7_A 225 LENLVNEAALLAAR 238 (476)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 88899888766543
No 40
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.81 E-value=4.2e-19 Score=204.19 Aligned_cols=206 Identities=22% Similarity=0.302 Sum_probs=163.9
Q ss_pred HHHhcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14504 36 EKARLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 102 (951)
Q Consensus 36 e~~rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~ 102 (951)
+..++.+|++++|++..++++...+. ...+.++||+||||||||++|+++|+.+ +.+
T Consensus 196 ~~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~----------~~~ 265 (489)
T 3hu3_A 196 ESLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET----------GAF 265 (489)
T ss_dssp HHHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHC----------SSE
T ss_pred cccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHh----------CCC
Confidence 34567789999999999988887654 3566789999999999999999999987 889
Q ss_pred EEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCc---hhHHhhhhhhcc----CCcEE
Q psy14504 103 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGS---IDAGNMLKPELS----RGELH 175 (951)
Q Consensus 103 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~---~~~~~~L~~~le----~~~i~ 175 (951)
++.++++.+. +.+.|+.+..++.+|..+.. ..|+||||||+|.|.+.++...+ ...++.|+..++ ...++
T Consensus 266 fv~vn~~~l~--~~~~g~~~~~~~~~f~~A~~-~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~~~~v~ 342 (489)
T 3hu3_A 266 FFLINGPEIM--SKLAGESESNLRKAFEEAEK-NAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI 342 (489)
T ss_dssp EEEEEHHHHH--TSCTTHHHHHHHHHHHHHHH-TCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCTTSCEE
T ss_pred EEEEEchHhh--hhhcchhHHHHHHHHHHHHh-cCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccccCCceE
Confidence 9999999888 56789999999999999974 45899999999999886543322 245566666664 56899
Q ss_pred EEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCC
Q psy14504 176 CIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFM 252 (951)
Q Consensus 176 vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~ 252 (951)
+|+|||.++ .+++++++ ||.. +.|+.|+.++|.+||+.+++..... .+..+..++..+.+|.
T Consensus 343 vIaaTn~~~-----~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-----~~~~l~~la~~t~g~s----- 407 (489)
T 3hu3_A 343 VMAATNRPN-----SIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-----DDVDLEQVANETHGHV----- 407 (489)
T ss_dssp EEEEESCGG-----GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-----TTCCHHHHHHTCTTCC-----
T ss_pred EEEecCCcc-----ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-----chhhHHHHHHHccCCc-----
Confidence 999999998 78999999 9986 9999999999999999877654322 1223566666666654
Q ss_pred chhHHHHHHHHHHHhHH
Q psy14504 253 PDKAIDLIDEAAAKIKI 269 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~~ 269 (951)
+++...++..|+..+..
T Consensus 408 ~~dL~~L~~~A~~~a~r 424 (489)
T 3hu3_A 408 GADLAALCSEAALQAIR 424 (489)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 67788888877665543
No 41
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.81 E-value=6.2e-19 Score=188.30 Aligned_cols=202 Identities=18% Similarity=0.269 Sum_probs=144.9
Q ss_pred cCCCCCccccHHHHHHHHHHHH---c---------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVLQ---R---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 107 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l~---~---------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 107 (951)
+.+|++++|.+..++.+..++. . ..+.++||+||||||||++|+++|+.+ +.+++.++
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~~~~ 71 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA----------QVPFLAMA 71 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEEE
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEec
Confidence 3579999999988877766442 1 456789999999999999999999998 77899999
Q ss_pred hhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC-------CchhHHhhhhhhcc----CCcEEE
Q psy14504 108 IALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE-------GSIDAGNMLKPELS----RGELHC 176 (951)
Q Consensus 108 ~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~-------~~~~~~~~L~~~le----~~~i~v 176 (951)
++.+. ..+.|.....+..+|..+.. ..++||||||+|.+...+... ......+.++..++ ...+++
T Consensus 72 ~~~~~--~~~~~~~~~~~~~~~~~a~~-~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~v 148 (262)
T 2qz4_A 72 GAEFV--EVIGGLGAARVRSLFKEARA-RAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIV 148 (262)
T ss_dssp TTTTS--SSSTTHHHHHHHHHHHHHHH-TCSEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEE
T ss_pred hHHHH--hhccChhHHHHHHHHHHHHh-cCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEE
Confidence 88775 45667788889999998874 458999999999997654221 11122233333332 357899
Q ss_pred EEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChH-HHHHHHHHhhhhcccCCC
Q psy14504 177 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDP-AIVAASELSYRYISDRFM 252 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~-~l~~~~~~s~~~~~~~~~ 252 (951)
|++||.+. .+++++.+ ||+. +.|+.|+.++|.+|++.++... +...+.. ....++..+.+|.
T Consensus 149 i~~tn~~~-----~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~----~~~~~~~~~~~~l~~~~~g~~----- 214 (262)
T 2qz4_A 149 LASTNRAD-----ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSL----KLTQSSTFYSQRLAELTPGFS----- 214 (262)
T ss_dssp EEEESCGG-----GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHT----TCCBTHHHHHHHHHHTCTTCC-----
T ss_pred EecCCChh-----hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhC----CCCcchhhHHHHHHHHCCCCC-----
Confidence 99999987 78899999 9975 9999999999999999988764 3344444 3456666665554
Q ss_pred chhHHHHHHHHHHHhH
Q psy14504 253 PDKAIDLIDEAAAKIK 268 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~ 268 (951)
++++..+++.|+..+.
T Consensus 215 ~~~l~~l~~~a~~~a~ 230 (262)
T 2qz4_A 215 GADIANICNEAALHAA 230 (262)
T ss_dssp HHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5688888888776554
No 42
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.80 E-value=3.7e-19 Score=200.06 Aligned_cols=226 Identities=17% Similarity=0.240 Sum_probs=181.4
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccC
Q psy14504 441 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 520 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 520 (951)
.++|++..++.+...+..... . ..+++++|++|||||++|++|+........+|+.+||+.+......+.+||
T Consensus 138 ~~ig~s~~m~~l~~~i~~~a~----~---~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg 210 (387)
T 1ny5_A 138 EYVFESPKMKEILEKIKKISC----A---ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFG 210 (387)
T ss_dssp CCCCCSHHHHHHHHHHHHHTT----C---CSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHC
T ss_pred hhhhccHHhhHHHHHHHHhcC----C---CCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcC
Confidence 466777778888777766431 1 125899999999999999999999877778999999999988878889999
Q ss_pred CCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhh
Q psy14504 521 APPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 599 (951)
Q Consensus 521 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 599 (951)
+..| +.|.... ..+.+..+.+++||||||+.+++.+|..|+++|++|.+....|......++.+|+|||.+......
T Consensus 211 ~~~g~~tga~~~--~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~ 288 (387)
T 1ny5_A 211 YEKGAFTGAVSS--KEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVK 288 (387)
T ss_dssp BCTTSSTTCCSC--BCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHH
T ss_pred CCCCCCCCcccc--cCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHH
Confidence 8765 4454322 234566778899999999999999999999999999998766665666788999999987654332
Q ss_pred hccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Q psy14504 600 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 676 (951)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~ 676 (951)
.+.|+++|++|++. .|.+|||.+ +|+..++..++.++..++... ...+++++++.|..
T Consensus 289 -----------------~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~l~~ 349 (387)
T 1ny5_A 289 -----------------EGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKE--VEGFTKSAQELLLS 349 (387)
T ss_dssp -----------------TTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCC--CCEECHHHHHHHHH
T ss_pred -----------------cCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCC--CCCCCHHHHHHHHh
Confidence 56899999999965 688899876 899999999888876554332 14699999999988
Q ss_pred hcccccccccccccchHHHHHHH
Q psy14504 677 IGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 677 ~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
|+|++++|.+... +++++
T Consensus 350 --~~wpGNvreL~~~---i~~~~ 367 (387)
T 1ny5_A 350 --YPWYGNVRELKNV---IERAV 367 (387)
T ss_dssp --SCCTTHHHHHHHH---HHHHH
T ss_pred --CCCCcHHHHHHHH---HHHHH
Confidence 8889999999888 77766
No 43
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.80 E-value=4.7e-19 Score=188.59 Aligned_cols=208 Identities=20% Similarity=0.295 Sum_probs=154.5
Q ss_pred hHHHHhcCCCCCccccHHHHHHHHHHHH---c---------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCC
Q psy14504 34 LTEKARLGKLDPVIGRDDEIRRAIQVLQ---R---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSK 101 (951)
Q Consensus 34 l~e~~rp~~l~~lvG~~~~i~~l~~~l~---~---------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~ 101 (951)
|++++++.+|++++|.+..++.+...+. . ..+.+++|+||||||||++|+++|+.+ +.
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~ 71 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA----------KV 71 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH----------TC
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc----------CC
Confidence 4556788899999999988777665432 1 346689999999999999999999988 66
Q ss_pred eEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC---Cch---hHHhhhhhhcc----C
Q psy14504 102 KILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSI---DAGNMLKPELS----R 171 (951)
Q Consensus 102 ~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~---~~~~~L~~~le----~ 171 (951)
+++.++++.+. ..+.|..+..++.+|..+. ...|+++||||+|.+....... +.. ...+.++..++ .
T Consensus 72 ~~~~i~~~~~~--~~~~~~~~~~~~~~~~~a~-~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~ 148 (257)
T 1lv7_A 72 PFFTISGSDFV--EMFVGVGASRVRDMFEQAK-KAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGN 148 (257)
T ss_dssp CEEEECSCSST--TSCCCCCHHHHHHHHHHHH-TTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSS
T ss_pred CEEEEeHHHHH--HHhhhhhHHHHHHHHHHHH-HcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccC
Confidence 78888877765 4466777888999999987 4458899999999998754321 111 23333444442 4
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChH-HHHHHHHHhhhhc
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDP-AIVAASELSYRYI 247 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~-~l~~~~~~s~~~~ 247 (951)
..+++|++||.++ .+++++.+ ||.. +.++.|+.++|.+|++.++++.. ++++ .+..++..+.+|
T Consensus 149 ~~~~vI~~tn~~~-----~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~------l~~~~~~~~la~~~~G~- 216 (257)
T 1lv7_A 149 EGIIVIAATNRPD-----VLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP------LAPDIDAAIIARGTPGF- 216 (257)
T ss_dssp SCEEEEEEESCTT-----TSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC------BCTTCCHHHHHHTCTTC-
T ss_pred CCEEEEEeeCCch-----hCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC------CCccccHHHHHHHcCCC-
Confidence 6799999999987 88999998 9986 99999999999999988776532 2222 244455554443
Q ss_pred ccCCCchhHHHHHHHHHHHhHHh
Q psy14504 248 SDRFMPDKAIDLIDEAAAKIKIE 270 (951)
Q Consensus 248 ~~~~~p~~a~~ll~~a~~~~~~~ 270 (951)
.++++..++..|+..+..+
T Consensus 217 ----~~~dl~~l~~~a~~~a~~~ 235 (257)
T 1lv7_A 217 ----SGADLANLVNEAALFAARG 235 (257)
T ss_dssp ----CHHHHHHHHHHHHHHHHHT
T ss_pred ----CHHHHHHHHHHHHHHHHHh
Confidence 4788888888887665543
No 44
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.80 E-value=3.5e-19 Score=196.55 Aligned_cols=198 Identities=16% Similarity=0.224 Sum_probs=158.1
Q ss_pred hhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCc-EEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 30 YTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNP-VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 30 ~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~i-LL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
-..+|.++|||.+|++++|++..++.+..++.....+++ |++||||||||++|+++|+.+ +.+++.+++
T Consensus 12 ~~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l----------~~~~~~i~~ 81 (324)
T 3u61_B 12 KEHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDV----------NADMMFVNG 81 (324)
T ss_dssp TCSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHT----------TEEEEEEET
T ss_pred ccchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHh----------CCCEEEEcc
Confidence 346899999999999999999999999999987776666 555779999999999999998 778888886
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHhc----CCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecc
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISNN----QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTL 182 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~~----~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~ 182 (951)
+.. + ...++..+..+... +.+.||||||+|.+.. .+.++.|+.+++. ..+++|++||.
T Consensus 82 ~~~-------~--~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------~~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 82 SDC-------K--IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------AESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp TTC-------C--HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------HHHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred ccc-------C--HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------HHHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 442 1 22455545443322 2578999999999951 3566778888874 57889999998
Q ss_pred hHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhh---hhcCCCCCh-HHHHHHHHHhhhhcccCCCchhHHH
Q psy14504 183 NEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYE---VHHGVEITD-PAIVAASELSYRYISDRFMPDKAID 258 (951)
Q Consensus 183 ~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~---~~~~~~i~~-~~l~~~~~~s~~~~~~~~~p~~a~~ 258 (951)
.. .+++++++||..+.|++|+.+++..|++.+...+. ...++.+++ +++..++..+.+.+ +.+++
T Consensus 146 ~~-----~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~------R~a~~ 214 (324)
T 3u61_B 146 ID-----GIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF------RKTIG 214 (324)
T ss_dssp GG-----GSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT------THHHH
T ss_pred cc-----ccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH------HHHHH
Confidence 87 78999999999999999999999888766544332 356788988 99999999988877 78888
Q ss_pred HHHHHH
Q psy14504 259 LIDEAA 264 (951)
Q Consensus 259 ll~~a~ 264 (951)
.++.++
T Consensus 215 ~L~~~~ 220 (324)
T 3u61_B 215 ELDSYS 220 (324)
T ss_dssp HHHHHG
T ss_pred HHHHHh
Confidence 888876
No 45
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.80 E-value=1.2e-18 Score=193.39 Aligned_cols=197 Identities=20% Similarity=0.234 Sum_probs=148.3
Q ss_pred HHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHc-----CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCe
Q psy14504 28 KKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQR-----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKK 102 (951)
Q Consensus 28 ~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~-----~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~ 102 (951)
..-...|.++|+|.+|++++|++..++.+...+.. ....++||+||||||||++|+++|+.+ +.+
T Consensus 13 ~~~~~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~----------~~~ 82 (338)
T 3pfi_A 13 YSFDETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEM----------SAN 82 (338)
T ss_dssp ----------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHT----------TCC
T ss_pred cchhhhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHh----------CCC
Confidence 34456789999999999999999999888887763 556789999999999999999999987 778
Q ss_pred EEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCc---------
Q psy14504 103 ILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE--------- 173 (951)
Q Consensus 103 ~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~--------- 173 (951)
++.+++..+. ..+ .+...+.. ...+++|||||++.+.+ ..++.|+..++.+.
T Consensus 83 ~~~~~~~~~~----~~~----~~~~~~~~---~~~~~vl~lDEi~~l~~--------~~~~~Ll~~l~~~~~~~~~~~~~ 143 (338)
T 3pfi_A 83 IKTTAAPMIE----KSG----DLAAILTN---LSEGDILFIDEIHRLSP--------AIEEVLYPAMEDYRLDIIIGSGP 143 (338)
T ss_dssp EEEEEGGGCC----SHH----HHHHHHHT---CCTTCEEEEETGGGCCH--------HHHHHHHHHHHTSCC--------
T ss_pred eEEecchhcc----chh----HHHHHHHh---ccCCCEEEEechhhcCH--------HHHHHHHHHHHhccchhhcccCc
Confidence 8888876543 111 23333333 34577999999999843 56667777776542
Q ss_pred -----------EEEEEeecchHHHHhhhcCHHHhhcce-EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHH
Q psy14504 174 -----------LHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASE 241 (951)
Q Consensus 174 -----------i~vI~at~~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~ 241 (951)
+++|++||... .+++++++||+ .+.|++|+.+++..+++..+.. .++.++++++..++.
T Consensus 144 ~~~~~~~~~~~~~~i~atn~~~-----~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~----~~~~~~~~~~~~l~~ 214 (338)
T 3pfi_A 144 AAQTIKIDLPKFTLIGATTRAG-----MLSNPLRDRFGMQFRLEFYKDSELALILQKAALK----LNKTCEEKAALEIAK 214 (338)
T ss_dssp -CCCCCCCCCCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHH
T ss_pred cccceecCCCCeEEEEeCCCcc-----ccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHH
Confidence 78999999987 68999999995 5999999999999999988775 356789999999888
Q ss_pred HhhhhcccCCCchhHHHHHHHHHHHhH
Q psy14504 242 LSYRYISDRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 242 ~s~~~~~~~~~p~~a~~ll~~a~~~~~ 268 (951)
.+.+.. +.+.++++.+...+.
T Consensus 215 ~~~G~~------r~l~~~l~~~~~~a~ 235 (338)
T 3pfi_A 215 RSRSTP------RIALRLLKRVRDFAD 235 (338)
T ss_dssp TTTTCH------HHHHHHHHHHHHHHH
T ss_pred HHCcCH------HHHHHHHHHHHHHHH
Confidence 776654 788888887765544
No 46
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=99.80 E-value=1e-19 Score=188.76 Aligned_cols=195 Identities=23% Similarity=0.329 Sum_probs=131.3
Q ss_pred cccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHHHHHhhcccC
Q psy14504 680 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKK 759 (951)
Q Consensus 680 ~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~ 759 (951)
.+.+.++|+||++..+.++++.+++.+..|.++++||++|+|+.+.++++++.+ ..+++|+||||.+.+.+.......
T Consensus 13 ~~i~visDiHg~~~~l~~~l~~~~~~~~~d~~i~~GD~~~~g~~~~~~~~~l~~--~~~~~v~GNhd~~~~~~~~~~~~~ 90 (221)
T 1g5b_A 13 RNIWVVGDLHGCYTNLMNKLDTIGFDNKKDLLISVGDLVDRGAENVECLELITF--PWFRAVRGNHEQMMIDGLSERGNV 90 (221)
T ss_dssp SCEEEECCCTTCHHHHHHHHHHHTCCTTTCEEEECSCCSSSSSCHHHHHGGGGS--TTEEECCCHHHHHHHHHHSTTCCC
T ss_pred ceEEEEEcCCCCHHHHHHHHHHccCCCCCCEEEEeCCccCCCCChHHHHHHHhc--CCEEEEccCcHHHHHhhhccCCcH
Confidence 456789999999999999999998765678999999999999999999998874 358999999999988765321100
Q ss_pred -----CccccHHHh--hCCCCHHHHHHHHhcCCceEEe----CCEEEEecccCcCCC-HHHHHHHhHHHHHHhhcccHHh
Q psy14504 760 -----SKLDTFDDI--LDAPDKKKLVSWLRTQPLAIYY----KKYLMIHAGVAKQWT-AQQTIKLSHQVEKILRTSYWKN 827 (951)
Q Consensus 760 -----~~~~~~~~~--~~~~~~~~~~~~l~~~p~~~~~----~~~~~vHAG~~p~~~-~~~~~~~~~~~~~~l~~~~~~~ 827 (951)
.....+..+ ......+++.+||+++|..+.. .++++||||++|... ... +.. +..
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~lP~~~~~~~~~~~i~~vHgg~~~~~~~~~~--~~~-----------~~~ 157 (221)
T 1g5b_A 91 NHWLLNGGGWFFNLDYDKEILAKALAHKADELPLIIELVSKDKKYVICHADYPFDEYEFGK--PVD-----------HQQ 157 (221)
T ss_dssp HHHHTTTGGGGGGSCHHHHHHHHHHHHHHTTCCSEEEEEETTEEEEECSSCCCSSBCCTTC--CCC-----------HHH
T ss_pred HHHHHcCCCchhhcCHHHHHHHHHHHHHHHhCCcEEEEEecCCeEEEEecCCChhhcccCC--Ccc-----------ccc
Confidence 000000000 0011236789999999998764 479999999877421 000 000 000
Q ss_pred HHHHhcCCCCCCCCccccccccccchhhhHhhhccccccccCCCCcccccccccCCCCCCCCCCCcccCCCCCCCCceEE
Q psy14504 828 LFFKLYNHNSINWDNHLHTIHLNTIDKLQFIINTLTRTRFCKIDGTIEFIKKNIKNNNFQNNYIPWFDLPNRKTIDITVL 907 (951)
Q Consensus 828 ~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~tr~r~~~~~g~~~~~~~~~~~~~~~~~~~~W~~~~~~~~~~~~vv 907 (951)
..|++. ++.. ..+ .|. ....+...||
T Consensus 158 ----------~lw~~~----------------------~~~~-------~~~------------~~~---~~~~~~~~vv 183 (221)
T 1g5b_A 158 ----------VIWNRE----------------------RISN-------SQN------------GIV---KEIKGADTFI 183 (221)
T ss_dssp ----------HHHCCH----------------------HHHH-------HHT------------TCC---CCCBTSSEEE
T ss_pred ----------cccCch----------------------hhhh-------hcc------------ccC---CcccCCCEEE
Confidence 012211 0000 000 000 0011235799
Q ss_pred EccCCCCCcccCCCeEEcccccccCCeEEEEEecCC
Q psy14504 908 FGHWSTLGLIMKPNIICLDTGCVWGNKLTALCLEDR 943 (951)
Q Consensus 908 ~GH~~~~~~~~~~~~~~lDtG~v~gg~Ltal~l~~~ 943 (951)
||||+...+...++++.||+||++||+|||++++++
T Consensus 184 ~GHth~~~~~~~~~~~~in~Gs~~gg~lt~~~l~~~ 219 (221)
T 1g5b_A 184 FGHTPAVKPLKFANQMYIDTGAVFCGNLTLIQVQGA 219 (221)
T ss_dssp ECSSCCSSCEEETTEEECCCCHHHHSCCCEEEEECC
T ss_pred ECCCCCccceeeCCEEEEECCCCcCCceEEEEecCC
Confidence 999999988888999999999999999999999865
No 47
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.79 E-value=9.4e-19 Score=191.79 Aligned_cols=210 Identities=17% Similarity=0.185 Sum_probs=160.5
Q ss_pred CccccHHHHHHHHHHHH---------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 45 PVIGRDDEIRRAIQVLQ---------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~---------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
+++|++..++.+...+. .....++||+||||||||++|+++|+.+.... .....+++.++++
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~---~~~~~~~~~~~~~ 108 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLG---YVRKGHLVSVTRD 108 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTT---SSSSCCEEEECGG
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcC---CcCCCcEEEEcHH
Confidence 69999998888876544 34455799999999999999999999985532 1224578888888
Q ss_pred hhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCC-CCchhHHhhhhhhccC--CcEEEEEeecchHHH
Q psy14504 110 LLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKV-EGSIDAGNMLKPELSR--GELHCIGATTLNEYR 186 (951)
Q Consensus 110 ~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~-~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~ 186 (951)
.+. ..+.|.....+..+|..+. ++||||||+|.|.+.+.. ..+...++.|+..++. ..+++|++||...+.
T Consensus 109 ~l~--~~~~g~~~~~~~~~~~~~~----~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~ 182 (309)
T 3syl_A 109 DLV--GQYIGHTAPKTKEVLKRAM----GGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENNRDDLVVILAGYADRME 182 (309)
T ss_dssp GTC--CSSTTCHHHHHHHHHHHHT----TSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHCTTTCEEEEEECHHHHH
T ss_pred Hhh--hhcccccHHHHHHHHHhcC----CCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcCCCCEEEEEeCChHHHH
Confidence 876 5677888888888888773 569999999999765432 2245677888888864 478999999988777
Q ss_pred HhhhcCHHHhhcce-EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccC--CCchhHHHHHHHH
Q psy14504 187 QYIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDR--FMPDKAIDLIDEA 263 (951)
Q Consensus 187 ~~~~~~~~l~~Rf~-~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~--~~p~~a~~ll~~a 263 (951)
.+..++|+|++||. .+.|++|+.+++..|++.++.. .+..++++++..++..+.+..... ...+.+.++++.+
T Consensus 183 ~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~----~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a 258 (309)
T 3syl_A 183 NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDD----QNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRA 258 (309)
T ss_dssp HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHH----TTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHH
T ss_pred HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHH
Confidence 77788999999996 5999999999999999988875 357789999998888765432211 1235666777776
Q ss_pred HHHh
Q psy14504 264 AAKI 267 (951)
Q Consensus 264 ~~~~ 267 (951)
+...
T Consensus 259 ~~~~ 262 (309)
T 3syl_A 259 RLRQ 262 (309)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
No 48
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.79 E-value=8.8e-19 Score=195.25 Aligned_cols=225 Identities=16% Similarity=0.238 Sum_probs=178.7
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccC
Q psy14504 441 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 520 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 520 (951)
.++|++..+..+...+...... ..+++++|++||||+.+|++++......+ .|+.+||..+......+.+||
T Consensus 130 ~~ig~s~~~~~~~~~~~~~a~~-------~~~vli~GesGtGKe~lAr~ih~~s~r~~-~fv~vnc~~~~~~~~~~~lfg 201 (368)
T 3dzd_A 130 EFVGEHPKILEIKRLIPKIAKS-------KAPVLITGESGTGKEIVARLIHRYSGRKG-AFVDLNCASIPQELAESELFG 201 (368)
T ss_dssp CCCCCSHHHHHHHHHHHHHHTS-------CSCEEEECCTTSSHHHHHHHHHHHHCCCS-CEEEEESSSSCTTTHHHHHHE
T ss_pred cccccchHHHHHHhhhhhhhcc-------chhheEEeCCCchHHHHHHHHHHhccccC-CcEEEEcccCChHHHHHHhcC
Confidence 4667777777777777655421 12599999999999999999999885544 499999999988888889999
Q ss_pred CCCC-CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhh
Q psy14504 521 APPG-YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 599 (951)
Q Consensus 521 ~~~~-~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 599 (951)
+..| +.|.... -...+..+.+++||||||+.+++..|..|+++|++|.+....+......++.+|++||........
T Consensus 202 ~~~g~~tga~~~--~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~ 279 (368)
T 3dzd_A 202 HEKGAFTGALTR--KKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIK 279 (368)
T ss_dssp ECSCSSSSCCCC--EECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHH
T ss_pred ccccccCCcccc--cCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHH
Confidence 8766 4444332 223456677899999999999999999999999999998766655556788999999976654322
Q ss_pred hccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCCh--hhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Q psy14504 600 MEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNR--KNILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 676 (951)
Q Consensus 600 ~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~--~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~ 676 (951)
.+.|+++|++|+.. .|.+|||.+ +|+..++...+.++...+... ...+++++++.|..
T Consensus 280 -----------------~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~--~~~~~~~a~~~L~~ 340 (368)
T 3dzd_A 280 -----------------KGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKN--CFELSEETKEYLMK 340 (368)
T ss_dssp -----------------TTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCC--CCCBCHHHHHHHHT
T ss_pred -----------------cCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCC--CCCcCHHHHHHHHh
Confidence 56899999999976 588999988 899999999998877655432 26799999999988
Q ss_pred hcccccccccccccchHHHHHHH
Q psy14504 677 IGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 677 ~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
|+|+.++|.+... +++++
T Consensus 341 --~~wpGNvreL~n~---i~~~~ 358 (368)
T 3dzd_A 341 --QEWKGNVRELKNL---IERAV 358 (368)
T ss_dssp --CCCTTHHHHHHHH---HHHHH
T ss_pred --CCCCcHHHHHHHH---HHHHH
Confidence 8888889888888 77665
No 49
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.78 E-value=1.2e-18 Score=190.83 Aligned_cols=209 Identities=17% Similarity=0.281 Sum_probs=154.7
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHhh-------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC----
Q psy14504 430 KLLNIENLLCKRVVGQDEAISAVSNAIRRS-------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE---- 498 (951)
Q Consensus 430 ~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~-------~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~---- 498 (951)
.+.++...|.+.++|++.+++.+...+... ..|+..+ .+..++||+||||||||++|+++|+.+...+
T Consensus 21 ~~~~~~~~l~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~-~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~ 99 (309)
T 3syl_A 21 GAKEVLEELDRELIGLKPVKDRIRETAALLLVERARQKLGLAHE-TPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRK 99 (309)
T ss_dssp THHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSS-CCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSS
T ss_pred cHHHHHHHHHHHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCC-CCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCC
Confidence 456677788889999999999998877543 2343333 3344899999999999999999999985433
Q ss_pred CceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEcccccc---------CHHHHHHHHHHhhcc
Q psy14504 499 ESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKA---------NSDVFNILLQILDDG 569 (951)
Q Consensus 499 ~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~---------~~~~~~~Ll~~le~g 569 (951)
.+++.++++++... +.|.... .+...+..+.++||||||+|.+ ++.+++.|++.|+++
T Consensus 100 ~~~~~~~~~~l~~~------------~~g~~~~-~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~ 166 (309)
T 3syl_A 100 GHLVSVTRDDLVGQ------------YIGHTAP-KTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN 166 (309)
T ss_dssp CCEEEECGGGTCCS------------STTCHHH-HHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC
T ss_pred CcEEEEcHHHhhhh------------cccccHH-HHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC
Confidence 37888887766432 3343322 3445556667899999999977 889999999999962
Q ss_pred eeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHH
Q psy14504 570 RLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 649 (951)
Q Consensus 570 ~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~ 649 (951)
..++++|++||..... ....+.|+|.+||+.++.|++++.+++.+|+...
T Consensus 167 -----------~~~~~~i~~~~~~~~~-------------------~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~ 216 (309)
T 3syl_A 167 -----------RDDLVVILAGYADRME-------------------NFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHM 216 (309)
T ss_dssp -----------TTTCEEEEEECHHHHH-------------------HHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHH
T ss_pred -----------CCCEEEEEeCChHHHH-------------------HHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHH
Confidence 3567899998853211 0112469999999999999999999999997776
Q ss_pred HHHHHHHHHhcCCccccchHHHHHHHHhc-----ccccccccccccc
Q psy14504 650 LNILKNKLLKMNMDLKISKAALKKISNIG-----FDLIYGARDVHGC 691 (951)
Q Consensus 650 l~~~~~~~~~~~~~l~~~~~~~~~L~~~~-----~~~~~g~~dlhg~ 691 (951)
+.+ .+ +.+++++++.++... +.+..++|++...
T Consensus 217 l~~-------~~--~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~ 254 (309)
T 3syl_A 217 LDD-------QN--YQMTPEAETALRAYIGLRRNQPHFANARSIRNA 254 (309)
T ss_dssp HHH-------TT--CEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHH
T ss_pred HHH-------cC--CCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHH
Confidence 654 23 678999999998742 2555567887777
No 50
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.78 E-value=5.3e-19 Score=194.47 Aligned_cols=188 Identities=22% Similarity=0.354 Sum_probs=138.3
Q ss_pred hccCCChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 510 (951)
.++|.|.+++++.|.+.+... ..|...| ..+|||||||||||++|+++|..+ +.+|+.++++++.
T Consensus 181 ~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~p----rGvLLyGPPGTGKTlLAkAiA~e~---~~~fi~v~~s~l~ 253 (437)
T 4b4t_I 181 YSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPP----KGVILYGAPGTGKTLLAKAVANQT---SATFLRIVGSELI 253 (437)
T ss_dssp GGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCC----SEEEEESSTTTTHHHHHHHHHHHH---TCEEEEEESGGGC
T ss_pred ceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CCCceECCCCchHHHHHHHHHHHh---CCCEEEEEHHHhh
Confidence 367889999999998887542 2344333 369999999999999999999999 7899999999887
Q ss_pred chhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhcceeecC
Q psy14504 511 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDN 574 (951)
Q Consensus 511 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~--------------~~~~~Ll~~le~g~~~~~ 574 (951)
.. |+|.++. +.++..++...+|||||||+|.+.+ .+.+.||..|+.-.
T Consensus 254 sk------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~---- 317 (437)
T 4b4t_I 254 QK------------YLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFD---- 317 (437)
T ss_dssp CS------------SSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCC----
T ss_pred hc------------cCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcC----
Confidence 64 7777665 5677778888899999999997642 34566777776311
Q ss_pred CCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 575 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 575 ~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
...++++|+|||.+. .++|+|+. |||..|.|+.++.++..+|++..+.+
T Consensus 318 -----~~~~ViVIaATNrpd------------------------~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~ 368 (437)
T 4b4t_I 318 -----DRGDVKVIMATNKIE------------------------TLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSK 368 (437)
T ss_dssp -----CSSSEEEEEEESCST------------------------TCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTT
T ss_pred -----CCCCEEEEEeCCChh------------------------hcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcC
Confidence 235788999999754 35778875 99999999999999999997655432
Q ss_pred HHHHHHhcCCccccchHH-HHHHHHhcccccccccccccc
Q psy14504 653 LKNKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 653 ~~~~~~~~~~~l~~~~~~-~~~L~~~~~~~~~g~~dlhg~ 691 (951)
.. +++++ ++.|+.. ...|.-.||...
T Consensus 369 -------~~----l~~dvdl~~LA~~--T~GfSGADI~~l 395 (437)
T 4b4t_I 369 -------MN----LSEDVNLETLVTT--KDDLSGADIQAM 395 (437)
T ss_dssp -------SC----BCSCCCHHHHHHH--CCSCCHHHHHHH
T ss_pred -------CC----CCCcCCHHHHHHh--CCCCCHHHHHHH
Confidence 22 22221 5566652 334556777765
No 51
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.2e-18 Score=195.02 Aligned_cols=188 Identities=18% Similarity=0.299 Sum_probs=137.0
Q ss_pred hccCCChHHHHHHHHHHHHh--------hhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~--------~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 510 (951)
.+.|.|.+.+++.|...+.. ...|...| ..+|||||||||||++|+++|..+ +.+|+.++++++.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~p----rGvLLyGPPGTGKTllAkAiA~e~---~~~f~~v~~s~l~ 252 (434)
T 4b4t_M 180 YSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP----KGALMYGPPGTGKTLLARACAAQT---NATFLKLAAPQLV 252 (434)
T ss_dssp GGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGC
T ss_pred hHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CeeEEECcCCCCHHHHHHHHHHHh---CCCEEEEehhhhh
Confidence 46788999999988887643 22344333 369999999999999999999999 7899999999887
Q ss_pred chhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------H---HHHHHHHHHhhcceeecC
Q psy14504 511 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------S---DVFNILLQILDDGRLTDN 574 (951)
Q Consensus 511 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~---~~~~~Ll~~le~g~~~~~ 574 (951)
.. |+|.++. +.++..++...+|||||||+|.+. . .+.+.||..|+.-.
T Consensus 253 ~~------------~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~---- 316 (434)
T 4b4t_M 253 QM------------YIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFS---- 316 (434)
T ss_dssp SS------------CSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSC----
T ss_pred hc------------ccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccC----
Confidence 64 7777664 566777777888999999998652 1 24566777777411
Q ss_pred CCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 575 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 575 ~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
...++++|+|||.+.. ++|+|+. |||..|.|+.++.++..+|++..+++
T Consensus 317 -----~~~~ViVIaaTNrp~~------------------------LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (434)
T 4b4t_M 317 -----SDDRVKVLAATNRVDV------------------------LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRK 367 (434)
T ss_dssp -----SSCSSEEEEECSSCCC------------------------CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEeCCCchh------------------------cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcC
Confidence 2246789999997553 5788865 99999999999999999997766543
Q ss_pred HHHHHHhcCCccccchHH-HHHHHHhcccccccccccccc
Q psy14504 653 LKNKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 653 ~~~~~~~~~~~l~~~~~~-~~~L~~~~~~~~~g~~dlhg~ 691 (951)
+ . +++++ ++.|+.. ...|.-+||...
T Consensus 368 ~-------~----~~~dvdl~~lA~~--t~G~sGADi~~l 394 (434)
T 4b4t_M 368 M-------T----TDDDINWQELARS--TDEFNGAQLKAV 394 (434)
T ss_dssp S-------C----BCSCCCHHHHHHH--CSSCCHHHHHHH
T ss_pred C-------C----CCCcCCHHHHHHh--CCCCCHHHHHHH
Confidence 2 1 12221 4556652 234556677665
No 52
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=4.2e-18 Score=189.29 Aligned_cols=188 Identities=22% Similarity=0.335 Sum_probs=137.6
Q ss_pred ccCCChHHHHHHHHHHHHh--------hhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~--------~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
+.|.|.+++++.|.+.+.. ...|...| ..+||+||||||||++|++||..+ +.+|+.++++++..
T Consensus 209 ~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pp----rGILLyGPPGTGKTlLAkAiA~e~---~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 209 SDVGGCKDQIEKLREVVELPLLSPERFATLGIDPP----KGILLYGPPGTGKTLCARAVANRT---DATFIRVIGSELVQ 281 (467)
T ss_dssp SSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCC----SEEEECSCTTSSHHHHHHHHHHHH---TCEEEEEEGGGGCC
T ss_pred HHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCC----CceEeeCCCCCcHHHHHHHHHhcc---CCCeEEEEhHHhhc
Confidence 5688999999988887643 23344333 369999999999999999999999 78999999998876
Q ss_pred hhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhcceeecCC
Q psy14504 512 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNR 575 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~--------------~~~~~Ll~~le~g~~~~~~ 575 (951)
. |+|.++. +.++..++...+|||||||+|.+.. .+.+.||..|+...
T Consensus 282 k------------~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~----- 344 (467)
T 4b4t_H 282 K------------YVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFD----- 344 (467)
T ss_dssp C------------SSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSC-----
T ss_pred c------------cCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccC-----
Confidence 4 7777665 5677777888899999999997642 34566777776411
Q ss_pred CeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHHH
Q psy14504 576 GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNIL 653 (951)
Q Consensus 576 g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~ 653 (951)
...++++|+|||... .++|+|+. |||..|.|+.++.++..+|++..++.
T Consensus 345 ----~~~~ViVIaATNrpd------------------------~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~- 395 (467)
T 4b4t_H 345 ----PRGNIKVMFATNRPN------------------------TLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKS- 395 (467)
T ss_dssp ----CTTTEEEEEECSCTT------------------------SBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTT-
T ss_pred ----CCCcEEEEeCCCCcc------------------------cCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcC-
Confidence 335788999999754 35788875 99999999999999999997655432
Q ss_pred HHHHHhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 654 KNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
..+.-.++ ++.|+.. ...|.-.||...
T Consensus 396 ------~~l~~dvd---l~~LA~~--T~GfSGADI~~l 422 (467)
T 4b4t_H 396 ------MSVERGIR---WELISRL--CPNSTGAELRSV 422 (467)
T ss_dssp ------SCBCSSCC---HHHHHHH--CCSCCHHHHHHH
T ss_pred ------CCCCCCCC---HHHHHHH--CCCCCHHHHHHH
Confidence 22111222 4556653 234556777765
No 53
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=1e-17 Score=185.12 Aligned_cols=208 Identities=21% Similarity=0.290 Sum_probs=156.5
Q ss_pred HHHHhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 26 YLKKYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 26 ~l~~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
.+.....+|.++|+|.+|++++|++..++.+...+.....+++||+||||||||++|+++++.+.... ....++.
T Consensus 7 ~~~~~~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l~~~~-----~~~~~~~ 81 (327)
T 1iqp_A 7 EVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALARELFGEN-----WRHNFLE 81 (327)
T ss_dssp HHHHTTSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHHHGGG-----HHHHEEE
T ss_pred hhcccCCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCceEE
Confidence 34555679999999999999999999999999999888777899999999999999999999874311 1234666
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHH-HhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecc
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEI-SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTL 182 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a-~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~ 182 (951)
++++.... .......+....... ....++.|++|||+|.+.+ +.++.|+..++. ..+++|++|+.
T Consensus 82 ~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~L~~~le~~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 82 LNASDERG----INVIREKVKEFARTKPIGGASFKIIFLDEADALTQ--------DAQQALRRTMEMFSSNVRFILSCNY 149 (327)
T ss_dssp EETTCHHH----HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCH--------HHHHHHHHHHHHTTTTEEEEEEESC
T ss_pred eeccccCc----hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCH--------HHHHHHHHHHHhcCCCCeEEEEeCC
Confidence 66543221 011111122211110 0114578999999999843 456678888864 56888889988
Q ss_pred hHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHH
Q psy14504 183 NEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 262 (951)
Q Consensus 183 ~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 262 (951)
+. .+.+++.+||..+.|++|+.++...+++..+.. .++.++++++..++..+.+.+ +.+..+++.
T Consensus 150 ~~-----~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~------r~~~~~l~~ 214 (327)
T 1iqp_A 150 SS-----KIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAEN----EGLELTEEGLQAILYIAEGDM------RRAINILQA 214 (327)
T ss_dssp GG-----GSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHT----TTCEECHHHHHHHHHHHTTCH------HHHHHHHHH
T ss_pred cc-----ccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHCCCCH------HHHHHHHHH
Confidence 77 789999999999999999999999999887764 467799999999999887755 788888876
Q ss_pred HHH
Q psy14504 263 AAA 265 (951)
Q Consensus 263 a~~ 265 (951)
+..
T Consensus 215 ~~~ 217 (327)
T 1iqp_A 215 AAA 217 (327)
T ss_dssp HHT
T ss_pred HHh
Confidence 653
No 54
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.76 E-value=2.1e-17 Score=171.49 Aligned_cols=199 Identities=25% Similarity=0.286 Sum_probs=152.7
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 111 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l 111 (951)
.+|.++++|..|++++|++..++.+...+.....++++|+||||||||++|+++++.+.... ....++.++++..
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~-----~~~~~~~~~~~~~ 79 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE 79 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----GGGGEEEEETTCT
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHhccc-----cccceEEeccccc
Confidence 57999999999999999999999999999888777899999999999999999999874321 1345666665332
Q ss_pred hcCccccccHHHHHHHHHHHHHh-----cCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc--CCcEEEEEeecchH
Q psy14504 112 LAGTKYRGEFEDRLKKILKEISN-----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS--RGELHCIGATTLNE 184 (951)
Q Consensus 112 ~~~~~~~g~~~~~l~~~~~~a~~-----~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le--~~~i~vI~at~~~~ 184 (951)
. + ...+...+..... ...+.||||||+|.+.+ ...+.|..+++ ...+++|++|+...
T Consensus 80 ~------~--~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 80 R------G--IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------DAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp T------C--HHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCH--------HHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred c------C--hHHHHHHHHHHhcccCCCccCceEEEEeChhhcCH--------HHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 1 1 1123333333321 24578999999999854 34556776765 35688889998876
Q ss_pred HHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHH
Q psy14504 185 YRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAA 264 (951)
Q Consensus 185 ~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~ 264 (951)
.+++++.+||..+.+++|+.+++..+++..+.. .+..++++++..++..+.+.. +.+.++++.++
T Consensus 144 -----~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~------r~l~~~l~~~~ 208 (226)
T 2chg_A 144 -----RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGDF------RKAINALQGAA 208 (226)
T ss_dssp -----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTCH------HHHHHHHHHHH
T ss_pred -----hcCHHHHHhCceeecCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHH
Confidence 789999999999999999999999999887764 356789999999988876654 77788887776
Q ss_pred HH
Q psy14504 265 AK 266 (951)
Q Consensus 265 ~~ 266 (951)
..
T Consensus 209 ~~ 210 (226)
T 2chg_A 209 AI 210 (226)
T ss_dssp HT
T ss_pred hc
Confidence 44
No 55
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.5e-18 Score=192.43 Aligned_cols=189 Identities=22% Similarity=0.361 Sum_probs=138.6
Q ss_pred hccCCChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 510 (951)
.+.|.|.+++++.|...+... ..|...| ..+|||||||||||++|++||..+ +.+|+.++++++.
T Consensus 180 ~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~p----rGvLL~GPPGtGKTllAkAiA~e~---~~~~~~v~~s~l~ 252 (437)
T 4b4t_L 180 FDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPP----KGVLLYGPPGTGKTLLAKAVAATI---GANFIFSPASGIV 252 (437)
T ss_dssp SGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCC----CEEEEESCTTSSHHHHHHHHHHHH---TCEEEEEEGGGTC
T ss_pred hhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCC----CeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehhhhc
Confidence 356889999999988887542 2344333 369999999999999999999999 7899999999887
Q ss_pred chhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC--------------HHHHHHHHHHhhcceeecC
Q psy14504 511 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN--------------SDVFNILLQILDDGRLTDN 574 (951)
Q Consensus 511 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~--------------~~~~~~Ll~~le~g~~~~~ 574 (951)
++ |+|.++. +.++..++...+|||||||+|.+. ..+.+.||..|+.-.
T Consensus 253 sk------------~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~---- 316 (437)
T 4b4t_L 253 DK------------YIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFD---- 316 (437)
T ss_dssp CS------------SSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSS----
T ss_pred cc------------cchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhccc----
Confidence 64 7776654 566777788889999999999764 235677888887411
Q ss_pred CCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 575 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 575 ~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
...+++||+|||.+. .++|+|+ +|||..|.|+.++.++..+|++..+.+
T Consensus 317 -----~~~~vivI~ATNrp~------------------------~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~ 367 (437)
T 4b4t_L 317 -----NLGQTKIIMATNRPD------------------------TLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAK 367 (437)
T ss_dssp -----CTTSSEEEEEESSTT------------------------SSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHT
T ss_pred -----CCCCeEEEEecCCch------------------------hhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcC
Confidence 235688999999754 3567776 469999999999999999997665533
Q ss_pred HHHHHHhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 653 LKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 653 ~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
....-.++ ++.|+. ....|.-+||...
T Consensus 368 -------~~~~~d~d---l~~lA~--~t~G~sGADi~~l 394 (437)
T 4b4t_L 368 -------VKKTGEFD---FEAAVK--MSDGFNGADIRNC 394 (437)
T ss_dssp -------SCBCSCCC---HHHHHH--TCCSCCHHHHHHH
T ss_pred -------CCCCcccC---HHHHHH--hCCCCCHHHHHHH
Confidence 22111121 455665 3344666777765
No 56
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.75 E-value=7.4e-18 Score=185.50 Aligned_cols=202 Identities=23% Similarity=0.263 Sum_probs=154.6
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 111 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l 111 (951)
.+|.++|||.+|++++|++..++.+...+.....+++||+||||||||++|+++++.+.... .+..++.++++..
T Consensus 5 ~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 79 (319)
T 2chq_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDLFGEN-----WRDNFIEMNASDE 79 (319)
T ss_dssp -CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHHHTTC-----HHHHCEEEETTST
T ss_pred ccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHhcCCc-----ccCCeEEEeCccc
Confidence 58999999999999999999999999988887777899999999999999999999874321 1234666776543
Q ss_pred hcCccccccHHHHHHHHHHHHH-hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHh
Q psy14504 112 LAGTKYRGEFEDRLKKILKEIS-NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQY 188 (951)
Q Consensus 112 ~~~~~~~g~~~~~l~~~~~~a~-~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~ 188 (951)
.. .......+........ ....+.|++|||+|.+.. +.++.|+.+++. ..+++|++||...
T Consensus 80 ~~----~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~L~~~le~~~~~~~~i~~~~~~~---- 143 (319)
T 2chq_A 80 RG----IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTA--------DAQAALRRTMEMYSKSCRFILSCNYVS---- 143 (319)
T ss_dssp TC----TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCH--------HHHHTTGGGTSSSSSSEEEEEEESCGG----
T ss_pred cC----hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCH--------HHHHHHHHHHHhcCCCCeEEEEeCChh----
Confidence 21 1111212222221110 114478999999999843 556778888875 5688999998877
Q ss_pred hhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q psy14504 189 IEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 189 ~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 265 (951)
.+.+++.+||..+.|++|+.+++..+++..+.. .++.++++++..++..+.+.+ +.+...++.++.
T Consensus 144 -~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~------r~~~~~l~~~~~ 209 (319)
T 2chq_A 144 -RIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEK----EGVKITEDGLEALIYISGGDF------RKAINALQGAAA 209 (319)
T ss_dssp -GSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHT----TCCCBCHHHHHHHHHTTTTCH------HHHHHHHHHHHH
T ss_pred -hcchHHHhhCeEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHHHH
Confidence 789999999999999999999999999887764 467899999999998887765 777777776653
No 57
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.75 E-value=4.5e-18 Score=190.21 Aligned_cols=188 Identities=22% Similarity=0.358 Sum_probs=137.5
Q ss_pred hccCCChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 510 (951)
.++|.|.+.+++.|...+... ..|...|+ .+|||||||||||++|+++|..+ +.+|+.++++++.
T Consensus 171 ~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~pr----GiLL~GPPGtGKT~lakAiA~~~---~~~~~~v~~~~l~ 243 (428)
T 4b4t_K 171 YADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPR----GVLLYGPPGTGKTMLVKAVANST---KAAFIRVNGSEFV 243 (428)
T ss_dssp GGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCC----EEEEESCTTTTHHHHHHHHHHHH---TCEEEEEEGGGTC
T ss_pred HHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCc----eEEEECCCCCCHHHHHHHHHHHh---CCCeEEEecchhh
Confidence 467889999999988877432 23443333 69999999999999999999999 7899999999877
Q ss_pred chhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC--------------HHHHHHHHHHhhcceeecC
Q psy14504 511 EKHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN--------------SDVFNILLQILDDGRLTDN 574 (951)
Q Consensus 511 ~~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~--------------~~~~~~Ll~~le~g~~~~~ 574 (951)
+. |+|.++. +.++..++...+|||||||+|.+. ..+.+.||..|+.-.
T Consensus 244 ~~------------~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~---- 307 (428)
T 4b4t_K 244 HK------------YLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFD---- 307 (428)
T ss_dssp CS------------SCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSC----
T ss_pred cc------------ccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCC----
Confidence 64 7776654 566777788889999999998642 246788888888411
Q ss_pred CCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEec-CCChhhHHHHHHHHHH
Q psy14504 575 RGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFR-YLNRKNILSIANIQLN 651 (951)
Q Consensus 575 ~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~-~l~~~~~~~i~~~~l~ 651 (951)
...++++|+|||.+. .++|+|+. |||..|.|+ +++.++...|++..+.
T Consensus 308 -----~~~~v~vI~aTN~~~------------------------~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~ 358 (428)
T 4b4t_K 308 -----QSTNVKVIMATNRAD------------------------TLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIAS 358 (428)
T ss_dssp -----SSCSEEEEEEESCSS------------------------SCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHH
T ss_pred -----CCCCEEEEEecCChh------------------------hcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 235688999999754 35788885 999999997 6799999999665543
Q ss_pred HHHHHHHhcCCccccchH-HHHHHHHhcccccccccccccc
Q psy14504 652 ILKNKLLKMNMDLKISKA-ALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 652 ~~~~~~~~~~~~l~~~~~-~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
+ .. ++++ -++.|+.. ...|.-+||...
T Consensus 359 ~-------~~----l~~~~dl~~lA~~--t~G~sgadi~~l 386 (428)
T 4b4t_K 359 K-------MS----LAPEADLDSLIIR--NDSLSGAVIAAI 386 (428)
T ss_dssp S-------SC----BCTTCCHHHHHHH--TTTCCHHHHHHH
T ss_pred C-------CC----CCcccCHHHHHHH--CCCCCHHHHHHH
Confidence 2 22 2222 14566652 234555677665
No 58
>1fjm_A Protein serine/threonine phosphatase-1 (alpha ISO 1); hydrolase, toxin, hydrolase-hydrolase inhibitor complex; HET: 1ZN; 2.10A {Oryctolagus cuniculus} SCOP: d.159.1.3
Probab=99.75 E-value=2.5e-18 Score=185.26 Aligned_cols=149 Identities=22% Similarity=0.316 Sum_probs=109.4
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeec
Q psy14504 635 RYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFL 714 (951)
Q Consensus 635 ~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~ 714 (951)
..++++++..++.....- +....--+.+ ..+.+.+|||||++++|.++++.+++. +.+.++|+
T Consensus 28 ~~l~~~~~~~l~~~~~~i----l~~e~~l~~~------------~~~i~viGDIHG~~~~L~~ll~~~g~~-~~~~~vfl 90 (330)
T 1fjm_A 28 VQLTENEIRGLCLKSREI----FLSQPILLEL------------EAPLKICGDIHGQYYDLLRLFEYGGFP-PESNYLFL 90 (330)
T ss_dssp CCCCHHHHHHHHHHHHHH----HHHSCSEEEE------------CSSEEEECBCTTCHHHHHHHHHHHCST-TSSCEEEC
T ss_pred CCCCHHHHHHHHHHHHHH----HHhCCCeEee------------cCceEEecCCCCCHHHHHHHHHHhCCC-CcceEEeC
Confidence 357888888775443322 2222211222 235788999999999999999999984 56889999
Q ss_pred ccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhcccCCccccHHHhhCCCCHHHHHHHHhcCCce-EE
Q psy14504 715 GDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLA-IY 789 (951)
Q Consensus 715 gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~-~~ 789 (951)
||++|||+.+++|+++++++ ++++++|+||||.+++....+... +....+ .....+.+.+||+.||++ +.
T Consensus 91 GD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~~----e~~~~y-~~~l~~~~~~~f~~LPl~~~i 165 (330)
T 1fjm_A 91 GDYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFYD----ECKRRY-NIKLWKTFTDCFNCLPIAAIV 165 (330)
T ss_dssp SCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHHH----HHHHHS-CHHHHHHHHHHHTTCCCEEEE
T ss_pred CCcCCCCCChHHHHHHHHHhhhhcCCceEEecCCchHhhhhhhhhhhh----hhhhhc-cHHHHHHHHHHHHhCCceEEE
Confidence 99999999999999999876 457999999999998875432110 011111 111246789999999996 56
Q ss_pred eCCEEEEecccCcCCC
Q psy14504 790 YKKYLMIHAGVAKQWT 805 (951)
Q Consensus 790 ~~~~~~vHAG~~p~~~ 805 (951)
.+++++||||++|.|.
T Consensus 166 ~~~i~~vHgGl~p~~~ 181 (330)
T 1fjm_A 166 DEKIFCCHGGLSPDLQ 181 (330)
T ss_dssp TTTEEEESSCCCTTCS
T ss_pred cCcEEEEccCCCcccC
Confidence 6789999999999984
No 59
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.75 E-value=1e-17 Score=187.28 Aligned_cols=204 Identities=20% Similarity=0.242 Sum_probs=152.4
Q ss_pred HhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 29 KYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 29 ~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
.-..+|+++|||.+|++++|+++.++.+...+.....+++||+||||||||++|+++|+.+.... .....++.+++
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~----~~~~~~~~~~~ 97 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKELYGPD----LMKSRILELNA 97 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHHHHHH----HHTTSEEEECS
T ss_pred ccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHhCCCc----ccccceEEEcc
Confidence 34468999999999999999999999999998888778899999999999999999999874210 01234566665
Q ss_pred hhhhcCccccccHHHHHHHHHHHHH---------------hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEIS---------------NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~---------------~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
++.. ..+ .+...+.... ....+.||||||+|.+.+ ..++.|+..++.
T Consensus 98 ~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~--------~~~~~Ll~~le~~~ 161 (353)
T 1sxj_D 98 SDER----GIS----IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTA--------DAQSALRRTMETYS 161 (353)
T ss_dssp SSCC----CHH----HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCH--------HHHHHHHHHHHHTT
T ss_pred cccc----chH----HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCH--------HHHHHHHHHHHhcC
Confidence 4321 011 1222222211 123457999999999854 455677777763
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
...++|.+||.+. .+.+++++||..+.|++|+.++...+++..+.. .++.++++++..++..+.+.+
T Consensus 162 ~~~~~il~~~~~~-----~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~----~~~~i~~~~l~~l~~~~~G~~---- 228 (353)
T 1sxj_D 162 GVTRFCLICNYVT-----RIIDPLASQCSKFRFKALDASNAIDRLRFISEQ----ENVKCDDGVLERILDISAGDL---- 228 (353)
T ss_dssp TTEEEEEEESCGG-----GSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHTSSCH----
T ss_pred CCceEEEEeCchh-----hCcchhhccCceEEeCCCCHHHHHHHHHHHHHH----hCCCCCHHHHHHHHHHcCCCH----
Confidence 4577888888876 789999999999999999999999999887763 467899999999999987665
Q ss_pred CchhHHHHHHHHHHHh
Q psy14504 252 MPDKAIDLIDEAAAKI 267 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~~ 267 (951)
+.++.+++.++...
T Consensus 229 --r~~~~~l~~~~~~~ 242 (353)
T 1sxj_D 229 --RRGITLLQSASKGA 242 (353)
T ss_dssp --HHHHHHHHHTHHHH
T ss_pred --HHHHHHHHHHHHhc
Confidence 88888888776543
No 60
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.74 E-value=2.7e-19 Score=191.85 Aligned_cols=204 Identities=21% Similarity=0.340 Sum_probs=140.9
Q ss_pred HHhcCCCCCccccHHHHHHHHHHHH------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEE
Q psy14504 37 KARLGKLDPVIGRDDEIRRAIQVLQ------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 104 (951)
Q Consensus 37 ~~rp~~l~~lvG~~~~i~~l~~~l~------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~ 104 (951)
+..+.+|++++|++..++.+...+. ...+.++||+||||||||++|+++|+.+ +.+++
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~----------~~~~~ 73 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA----------HVPFF 73 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHH----------TCCCC
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHh----------CCCEE
Confidence 4456789999999987777766544 2446789999999999999999999998 55666
Q ss_pred EEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC-------CchhHHhhhhhhcc-----CC
Q psy14504 105 LLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE-------GSIDAGNMLKPELS-----RG 172 (951)
Q Consensus 105 ~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~-------~~~~~~~~L~~~le-----~~ 172 (951)
.++++.+. ..+.|.....++.+|..+.. ..++||||||+|.+...+... .....++.|+..++ ..
T Consensus 74 ~v~~~~~~--~~~~~~~~~~~~~~~~~a~~-~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~ 150 (268)
T 2r62_A 74 SMGGSSFI--EMFVGLGASRVRDLFETAKK-QAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENA 150 (268)
T ss_dssp CCCSCTTT--TSCSSSCSSSSSTTHHHHHH-SCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCS
T ss_pred EechHHHH--HhhcchHHHHHHHHHHHHHh-cCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCC
Confidence 66666554 23444444456677777764 357899999999997653211 11123344555553 23
Q ss_pred cEEEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhccc
Q psy14504 173 ELHCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISD 249 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~ 249 (951)
.+++|+|||.++ .+++++.+ ||.. +.|+.|+.++|.++|+.++......... .+..++..+.++
T Consensus 151 ~v~vi~ttn~~~-----~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~-----~~~~la~~~~g~--- 217 (268)
T 2r62_A 151 PVIVLAATNRPE-----ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLANDV-----NLQEVAKLTAGL--- 217 (268)
T ss_dssp CCEEEECBSCCT-----TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCCSSC-----CTTTTTSSSCSS---
T ss_pred CEEEEEecCCch-----hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCCCcc-----CHHHHHHHcCCC---
Confidence 589999999987 78999999 9975 9999999999999998877654322222 233344444333
Q ss_pred CCCchhHHHHHHHHHHHhH
Q psy14504 250 RFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 250 ~~~p~~a~~ll~~a~~~~~ 268 (951)
.++++..+++.|+..+.
T Consensus 218 --~g~dl~~l~~~a~~~a~ 234 (268)
T 2r62_A 218 --AGADLANIINEAALLAG 234 (268)
T ss_dssp --CHHHHHHHHHHHHHTTS
T ss_pred --CHHHHHHHHHHHHHHHH
Confidence 35678888888776553
No 61
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.74 E-value=3.7e-17 Score=174.59 Aligned_cols=206 Identities=21% Similarity=0.267 Sum_probs=141.9
Q ss_pred hcCCCCCccccHHHHHHHHHHHH-------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ-------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~-------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
...+++++.|.++..+.+...+. -..+.+++|+|||||||||+++++|..+ +..++.
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~----------~~~~i~ 74 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANES----------GLNFIS 74 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHT----------TCEEEE
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHc----------CCCEEE
Confidence 34578999999988777765321 1345669999999999999999999987 667888
Q ss_pred EehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC---CchhHHhhhhhhcc----CCcEEEEE
Q psy14504 106 LDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSIDAGNMLKPELS----RGELHCIG 178 (951)
Q Consensus 106 ~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~~~~~~L~~~le----~~~i~vI~ 178 (951)
++...+. ..+.|+.+..+..+|+.+.. ..|+++|+||++.+...+... ......+.+...|+ +..+++++
T Consensus 75 i~g~~l~--~~~~~~~~~~i~~vf~~a~~-~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~~~~~i~ia 151 (274)
T 2x8a_A 75 VKGPELL--NMYVGESERAVRQVFQRAKN-SAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEARQQVFIMA 151 (274)
T ss_dssp EETTTTC--SSTTHHHHHHHHHHHHHHHH-TCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCSTTCEEEEE
T ss_pred EEcHHHH--hhhhhHHHHHHHHHHHHHHh-cCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccccCCEEEEe
Confidence 8877765 45678888899999998863 458999999999987543211 11223344444453 34688899
Q ss_pred eecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCC-hHHHHHHHHHhhhhcccCCCch
Q psy14504 179 ATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEIT-DPAIVAASELSYRYISDRFMPD 254 (951)
Q Consensus 179 at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~-~~~l~~~~~~s~~~~~~~~~p~ 254 (951)
+||.++ .+|++++| ||+. |+++.|+.++|.+||+.+.+... ..... +..+..++..+. +..+.+.
T Consensus 152 ~tn~p~-----~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~---~~~~~~~~~~~~la~~~~---~~g~sga 220 (274)
T 2x8a_A 152 ATNRPD-----IIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGT---KPPLDADVNLEAIAGDLR---CDCYTGA 220 (274)
T ss_dssp EESCGG-----GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTB---TTBBCTTCCHHHHHTCSG---GGSCCHH
T ss_pred ecCChh-----hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhccc---CCCCccccCHHHHHHhhc---cCCcCHH
Confidence 999998 78999999 9996 99999999999999998775321 11111 222444554321 2244588
Q ss_pred hHHHHHHHHHHHhH
Q psy14504 255 KAIDLIDEAAAKIK 268 (951)
Q Consensus 255 ~a~~ll~~a~~~~~ 268 (951)
+...++.+|+..+.
T Consensus 221 dl~~l~~~a~~~a~ 234 (274)
T 2x8a_A 221 DLSALVREASICAL 234 (274)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876543
No 62
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=9.1e-17 Score=177.06 Aligned_cols=197 Identities=20% Similarity=0.264 Sum_probs=155.0
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL 111 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l 111 (951)
.+|.++|+|..|++++|++..++.+...+.....++++|+||||+|||++|+++++.+.+.. ....++.++.+..
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l~~~~-----~~~~~~~~~~~~~ 83 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRS-----YADGVLELNASDD 83 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHHHGGG-----HHHHEEEECTTSC
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHhcCCc-----ccCCEEEecCccc
Confidence 58999999999999999999999999999888777899999999999999999999874311 1234565654331
Q ss_pred hcCccccccHHHHHHHHHHHHHh------cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecch
Q psy14504 112 LAGTKYRGEFEDRLKKILKEISN------NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLN 183 (951)
Q Consensus 112 ~~~~~~~g~~~~~l~~~~~~a~~------~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~ 183 (951)
.+ ...++.++..+.. .+.+.|++|||+|.+.. ..++.|+..++. ..+++|++|+..
T Consensus 84 ------~~--~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------~~~~~L~~~le~~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 84 ------RG--IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------GAQQALRRTMELYSNSTRFAFACNQS 147 (323)
T ss_dssp ------CS--HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------HHHHTTHHHHHHTTTTEEEEEEESCG
T ss_pred ------cC--hHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------HHHHHHHHHHhccCCCceEEEEeCCh
Confidence 11 2245555555431 22378999999999843 456678888864 568888888887
Q ss_pred HHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q psy14504 184 EYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 263 (951)
Q Consensus 184 ~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 263 (951)
. .+.+++.+||..+.|++|+.+++..+++..+.. .++.++++++..++..+.+.. +.+..+++.+
T Consensus 148 ~-----~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~~------r~a~~~l~~~ 212 (323)
T 1sxj_B 148 N-----KIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKL----EDVKYTNDGLEAIIFTAEGDM------RQAINNLQST 212 (323)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHHTTCH------HHHHHHHHHH
T ss_pred h-----hchhHHHhhceEEeecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHH
Confidence 6 789999999999999999999999999887764 367789999999999987765 7888888776
Q ss_pred H
Q psy14504 264 A 264 (951)
Q Consensus 264 ~ 264 (951)
+
T Consensus 213 ~ 213 (323)
T 1sxj_B 213 V 213 (323)
T ss_dssp H
T ss_pred H
Confidence 5
No 63
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=3e-17 Score=183.52 Aligned_cols=206 Identities=16% Similarity=0.154 Sum_probs=149.7
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHH-HcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCc-C-----------
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVL-QRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL-L----------- 99 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l-~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~-~----------- 99 (951)
+|++||||.+|++++|++..++.+...+ .....++++|+|||||||||+++++++.+......... .
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~ 82 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRK 82 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC---------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccccc
Confidence 6999999999999999999999999988 66666679999999999999999999976432210000 0
Q ss_pred -------CCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh-------------cCCCeEEEEecccccccCCCCCCch
Q psy14504 100 -------SKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN-------------NQKDIIIFIDELHTMIGTGKVEGSI 159 (951)
Q Consensus 100 -------~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~-------------~~~~~iL~iDEid~l~~~~~~~~~~ 159 (951)
...++.++.+.. .......++..+..+.. ..++.|++|||++.|. .
T Consensus 83 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~--------~ 148 (354)
T 1sxj_E 83 LELNVVSSPYHLEITPSDM------GNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLT--------K 148 (354)
T ss_dssp ---CCEECSSEEEECCC----------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSC--------H
T ss_pred ceeeeecccceEEecHhhc------CCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccC--------H
Confidence 011222222111 00011124444444321 2256799999999973 3
Q ss_pred hHHhhhhhhccC--CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCC-hHHH
Q psy14504 160 DAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEIT-DPAI 236 (951)
Q Consensus 160 ~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~-~~~l 236 (951)
..++.|+..++. ....+|.+|+... .+.+++++||..+.|++|+.+++..+++.++.. .++.++ ++++
T Consensus 149 ~~~~~L~~~le~~~~~~~~Il~t~~~~-----~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~~~l 219 (354)
T 1sxj_E 149 DAQAALRRTMEKYSKNIRLIMVCDSMS-----PIIAPIKSQCLLIRCPAPSDSEISTILSDVVTN----ERIQLETKDIL 219 (354)
T ss_dssp HHHHHHHHHHHHSTTTEEEEEEESCSC-----SSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCEECCSHHH
T ss_pred HHHHHHHHHHHhhcCCCEEEEEeCCHH-----HHHHHHHhhceEEecCCcCHHHHHHHHHHHHHH----cCCCCCcHHHH
Confidence 556677777753 4678888888876 789999999988999999999999999988764 467888 9999
Q ss_pred HHHHHHhhhhcccCCCchhHHHHHHHHHHHh
Q psy14504 237 VAASELSYRYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 237 ~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
..++..+.+.+ +.+..+++.++...
T Consensus 220 ~~i~~~~~G~~------r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 220 KRIAQASNGNL------RVSLLMLESMALNN 244 (354)
T ss_dssp HHHHHHHTTCH------HHHHHHHTHHHHTT
T ss_pred HHHHHHcCCCH------HHHHHHHHHHHHhC
Confidence 99999998876 89999999887654
No 64
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.73 E-value=7.2e-18 Score=197.25 Aligned_cols=203 Identities=20% Similarity=0.190 Sum_probs=146.9
Q ss_pred HhhcchHHHHhcCCCCCccccHHHHHHHHHHHHc-----------------CCCCCcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 29 KYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQR-----------------RSKNNPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 29 ~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~-----------------~~~~~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
.-...|+++|+|.+|++++|++..++.+..++.. +..+++||+||||||||++|+++|+.+
T Consensus 24 ~~~~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l-- 101 (516)
T 1sxj_A 24 ASDKLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL-- 101 (516)
T ss_dssp --CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT--
T ss_pred ccCCCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc--
Confidence 4456899999999999999999999999988764 134689999999999999999999998
Q ss_pred CCCCCCcCCCeEEEEehhhhhcCccccccHHHH---------HHHHHHHH----HhcCCCeEEEEecccccccCCCCCCc
Q psy14504 92 GEVPNSLLSKKILLLDIALLLAGTKYRGEFEDR---------LKKILKEI----SNNQKDIIIFIDELHTMIGTGKVEGS 158 (951)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~---------l~~~~~~a----~~~~~~~iL~iDEid~l~~~~~~~~~ 158 (951)
+..++.++++.... ... .... +..+|..+ .....+.||||||+|.+....
T Consensus 102 --------~~~~i~in~s~~~~--~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~----- 164 (516)
T 1sxj_A 102 --------GYDILEQNASDVRS--KTL--LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGD----- 164 (516)
T ss_dssp --------TCEEEEECTTSCCC--HHH--HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTS-----
T ss_pred --------CCCEEEEeCCCcch--HHH--HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhh-----
Confidence 78899888765431 100 0000 11122221 112457899999999997632
Q ss_pred hhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHH
Q psy14504 159 IDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVA 238 (951)
Q Consensus 159 ~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~ 238 (951)
+...+.|..+++.....+|++|+.... ..-+++.+|+..+.|++|+.+++..+|+.++.. .++.++++++..
T Consensus 165 ~~~l~~L~~~l~~~~~~iIli~~~~~~----~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~----~~~~i~~~~l~~ 236 (516)
T 1sxj_A 165 RGGVGQLAQFCRKTSTPLILICNERNL----PKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIR----EKFKLDPNVIDR 236 (516)
T ss_dssp TTHHHHHHHHHHHCSSCEEEEESCTTS----STTGGGTTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEEcCCCC----ccchhhHhceEEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHH
Confidence 234556777776655555555554321 223467788888999999999999999887764 367789999999
Q ss_pred HHHHhhhhcccCCCchhHHHHHHHHH
Q psy14504 239 ASELSYRYISDRFMPDKAIDLIDEAA 264 (951)
Q Consensus 239 ~~~~s~~~~~~~~~p~~a~~ll~~a~ 264 (951)
++..+.+.+ +.++++++.++
T Consensus 237 la~~s~Gdi------R~~i~~L~~~~ 256 (516)
T 1sxj_A 237 LIQTTRGDI------RQVINLLSTIS 256 (516)
T ss_dssp HHHHTTTCH------HHHHHHHTHHH
T ss_pred HHHHcCCcH------HHHHHHHHHHH
Confidence 999987766 77777776654
No 65
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.72 E-value=1.9e-16 Score=178.31 Aligned_cols=204 Identities=19% Similarity=0.181 Sum_probs=153.0
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCCC-------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS------------- 97 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~~------------- 97 (951)
.+|.++|||.+|++++|++..++.+...+......+ +||+||||||||++|+++++.+........
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~ 83 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 83 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHH
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHh
Confidence 478999999999999999999999999888766555 689999999999999999998854221100
Q ss_pred -cCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh---cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 98 -LLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 98 -~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
.....++.++.... .... .++.++..+.. .+++.||+|||+|.+.. ...+.|+..++.
T Consensus 84 ~~~~~~~~~~~~~~~----~~~~----~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~--------~~~~~Ll~~le~~~ 147 (373)
T 1jr3_A 84 QGRFVDLIEIDAASR----TKVE----DTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------HSFNALLKTLEEPP 147 (373)
T ss_dssp TSCCSSCEEEETTCS----CCSS----CHHHHHHHTTSCCSSSSSEEEEEECGGGSCH--------HHHHHHHHHHHSCC
T ss_pred ccCCCceEEeccccc----CCHH----HHHHHHHHHhhccccCCeEEEEEECcchhcH--------HHHHHHHHHHhcCC
Confidence 00112344443210 1111 24555555541 23468999999999843 456778888864
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
..+++|++|+... .+.+.+.+||..+.|++|+.++...+++..+.. .++.++++++..++..+.+..
T Consensus 148 ~~~~~Il~~~~~~-----~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~----~~~~~~~~a~~~l~~~~~G~~---- 214 (373)
T 1jr3_A 148 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGSL---- 214 (373)
T ss_dssp SSEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----HTCCBCHHHHHHHHHHSSSCH----
T ss_pred CceEEEEEeCChH-----hCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHCCCCH----
Confidence 5788888888776 788999999988999999999999999887764 467889999999999887655
Q ss_pred CchhHHHHHHHHHHH
Q psy14504 252 MPDKAIDLIDEAAAK 266 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~ 266 (951)
+.+..+++.+...
T Consensus 215 --r~~~~~l~~~~~~ 227 (373)
T 1jr3_A 215 --RDALSLTDQAIAS 227 (373)
T ss_dssp --HHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHh
Confidence 8888888877643
No 66
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.71 E-value=1.3e-16 Score=176.99 Aligned_cols=198 Identities=20% Similarity=0.271 Sum_probs=153.3
Q ss_pred hcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh
Q psy14504 31 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL 110 (951)
Q Consensus 31 ~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 110 (951)
..+|.++|||.+|++++|++..++.+...+.....+|++|+|||||||||+|+++|+.+.... ....+..++.+.
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~-----~~~~~~~~~~~~ 86 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKN-----YSNMVLELNASD 86 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTS-----HHHHEEEECTTS
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCC-----ccceEEEEcCcc
Confidence 468999999999999999999999999998888778899999999999999999999984321 012355555432
Q ss_pred hhcCccccccHHHHHHHHHHHHHhc-----CCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecch
Q psy14504 111 LLAGTKYRGEFEDRLKKILKEISNN-----QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLN 183 (951)
Q Consensus 111 l~~~~~~~g~~~~~l~~~~~~a~~~-----~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~ 183 (951)
. .| ...++..+..+... .+..|++|||+|.+.. +.++.|+..++. ....+|++||..
T Consensus 87 ~------~~--~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~--------~~~~~L~~~le~~~~~~~~il~~n~~ 150 (340)
T 1sxj_C 87 D------RG--IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTN--------AAQNALRRVIERYTKNTRFCVLANYA 150 (340)
T ss_dssp C------CS--HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCH--------HHHHHHHHHHHHTTTTEEEEEEESCG
T ss_pred c------cc--HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCH--------HHHHHHHHHHhcCCCCeEEEEEecCc
Confidence 1 11 12344444443311 2367999999999843 556778888864 467788888877
Q ss_pred HHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q psy14504 184 EYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 263 (951)
Q Consensus 184 ~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 263 (951)
. .+.+++.+||..+.|.+++.++...++..++.. .++.++++++..++.++.+.. +.++.+++.+
T Consensus 151 ~-----~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~----~~~~i~~~~~~~i~~~s~G~~------r~~~~~l~~~ 215 (340)
T 1sxj_C 151 H-----KLTPALLSQCTRFRFQPLPQEAIERRIANVLVH----EKLKLSPNAEKALIELSNGDM------RRVLNVLQSC 215 (340)
T ss_dssp G-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHT----TTCCBCHHHHHHHHHHHTTCH------HHHHHHTTTT
T ss_pred c-----ccchhHHhhceeEeccCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHcCCCH------HHHHHHHHHH
Confidence 6 789999999999999999999999999887753 467899999999999998866 7777777655
Q ss_pred H
Q psy14504 264 A 264 (951)
Q Consensus 264 ~ 264 (951)
+
T Consensus 216 ~ 216 (340)
T 1sxj_C 216 K 216 (340)
T ss_dssp T
T ss_pred H
Confidence 4
No 67
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.71 E-value=2.9e-16 Score=165.21 Aligned_cols=204 Identities=19% Similarity=0.182 Sum_probs=150.6
Q ss_pred cchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCC-CcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCc------------
Q psy14504 32 IDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKN-NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSL------------ 98 (951)
Q Consensus 32 ~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~-~iLL~GppGtGKTtla~~la~~l~~~~~~~~~------------ 98 (951)
.+|.++|+|..+++++|++..++.+...+.....+ .++|+||||||||++++.+++.+.........
T Consensus 11 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (250)
T 1njg_A 11 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIE 90 (250)
T ss_dssp CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHH
T ss_pred HHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHh
Confidence 57899999999999999999999999988775544 58999999999999999999988543211000
Q ss_pred --CCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--
Q psy14504 99 --LSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-- 171 (951)
Q Consensus 99 --~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-- 171 (951)
....++.++... ......+..++..+. ...++.+|+|||+|.+.+ ...+.|...++.
T Consensus 91 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~--------~~~~~l~~~l~~~~ 154 (250)
T 1njg_A 91 QGRFVDLIEIDAAS--------RTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSR--------HSFNALLKTLEEPP 154 (250)
T ss_dssp TTCCSSEEEEETTC--------GGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCH--------HHHHHHHHHHHSCC
T ss_pred ccCCcceEEecCcc--------cccHHHHHHHHHHhhhchhcCCceEEEEECcccccH--------HHHHHHHHHHhcCC
Confidence 001223332211 112234555555443 123578999999999833 455667777754
Q ss_pred CcEEEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCC
Q psy14504 172 GELHCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRF 251 (951)
Q Consensus 172 ~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~ 251 (951)
..+.+|++|+... .+++++.+|+..+.+++|+.++...+++..+.. .+..++++++..++..+.+.
T Consensus 155 ~~~~~i~~t~~~~-----~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~----- 220 (250)
T 1njg_A 155 EHVKFLLATTDPQ-----KLPVTILSRCLQFHLKALDVEQIRHQLEHILNE----EHIAHEPRALQLLARAAEGS----- 220 (250)
T ss_dssp TTEEEEEEESCGG-----GSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHTTC-----
T ss_pred CceEEEEEeCChH-----hCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHcCCC-----
Confidence 5788999998876 788999999988999999999999999887764 46788999999999988664
Q ss_pred CchhHHHHHHHHHHH
Q psy14504 252 MPDKAIDLIDEAAAK 266 (951)
Q Consensus 252 ~p~~a~~ll~~a~~~ 266 (951)
|+.+..+++.++..
T Consensus 221 -~~~~~~~~~~~~~~ 234 (250)
T 1njg_A 221 -LRDALSLTDQAIAS 234 (250)
T ss_dssp -HHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHhc
Confidence 58888888887543
No 68
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.71 E-value=2.3e-16 Score=177.37 Aligned_cols=208 Identities=18% Similarity=0.242 Sum_probs=145.5
Q ss_pred cchHHHHhcCC-CCCccccHHHHHH---HHHHHHcCCC--CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEE
Q psy14504 32 IDLTEKARLGK-LDPVIGRDDEIRR---AIQVLQRRSK--NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILL 105 (951)
Q Consensus 32 ~~l~e~~rp~~-l~~lvG~~~~i~~---l~~~l~~~~~--~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~ 105 (951)
.++.++++|.. |++++|++..++. +...+..... .++||+||||||||++|+++|+.+.. ..+++.
T Consensus 31 l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~--------~~~~~~ 102 (368)
T 3uk6_A 31 LGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGP--------DTPFTA 102 (368)
T ss_dssp CCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCS--------SCCEEE
T ss_pred cCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcc--------cCCccc
Confidence 45678899998 9999999988666 4444444433 58999999999999999999999832 224555
Q ss_pred EehhhhhcC-----------------------------------------------ccccccHHHHHHHHHHHHHh----
Q psy14504 106 LDIALLLAG-----------------------------------------------TKYRGEFEDRLKKILKEISN---- 134 (951)
Q Consensus 106 ~~~~~l~~~-----------------------------------------------~~~~g~~~~~l~~~~~~a~~---- 134 (951)
+++..+... ....|+....++..+..+..
T Consensus 103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 182 (368)
T 3uk6_A 103 IAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWRE 182 (368)
T ss_dssp EEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHH
T ss_pred ccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhh
Confidence 554331100 01123333445555544431
Q ss_pred cCC----CeEEEEecccccccCCCCCCchhHHhhhhhhccCC--cEEEEEee-----------cchHHHHhhhcCHHHhh
Q psy14504 135 NQK----DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--ELHCIGAT-----------TLNEYRQYIEKDAAFER 197 (951)
Q Consensus 135 ~~~----~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~--~i~vI~at-----------~~~~~~~~~~~~~~l~~ 197 (951)
.+. |+||||||+|.+.+ +.++.|+..++.. .++++++. +.+. .+++++++
T Consensus 183 ~g~~~~~~~vl~IDEi~~l~~--------~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~-----~l~~~l~s 249 (368)
T 3uk6_A 183 EGKAEIIPGVLFIDEVHMLDI--------ESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPH-----GIPIDLLD 249 (368)
T ss_dssp HTC---CBCEEEEESGGGSBH--------HHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEET-----TCCHHHHT
T ss_pred hccccccCceEEEhhccccCh--------HHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcc-----cCCHHHHh
Confidence 121 56999999999843 5667788887653 34333333 1233 68999999
Q ss_pred cceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhh-hhcccCCCchhHHHHHHHHHHHhHHh
Q psy14504 198 RFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSY-RYISDRFMPDKAIDLIDEAAAKIKIE 270 (951)
Q Consensus 198 Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~-~~~~~~~~p~~a~~ll~~a~~~~~~~ 270 (951)
||..+.|++|+.+++..|++..+.. .++.++++++..++..+. +. ++.+..+++.++..+..+
T Consensus 250 R~~~i~~~~~~~~e~~~il~~~~~~----~~~~~~~~~l~~l~~~~~~G~------~r~~~~ll~~a~~~A~~~ 313 (368)
T 3uk6_A 250 RLLIVSTTPYSEKDTKQILRIRCEE----EDVEMSEDAYTVLTRIGLETS------LRYAIQLITAASLVCRKR 313 (368)
T ss_dssp TEEEEEECCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHHHHHSC------HHHHHHHHHHHHHHHHHT
T ss_pred hccEEEecCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhcCCC------HHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999987764 467899999999999987 44 489999999988766443
No 69
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.71 E-value=8.2e-17 Score=176.96 Aligned_cols=194 Identities=16% Similarity=0.281 Sum_probs=142.9
Q ss_pred ccCCChHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~---~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
..++|++.+++.+...+..... .......|..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 18 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~---- 90 (322)
T 3eie_A 18 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK---- 90 (322)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHH---TCEEEEEEHHHHHTT----
T ss_pred HHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHH---CCCEEEEchHHHhhc----
Confidence 5688999999999988743211 111223444589999999999999999999998 678999998876542
Q ss_pred cccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHhhcceeecCCCeEeecCC
Q psy14504 517 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRN 583 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~ 583 (951)
|.|..+. +.++..++...++||||||||.+.+ .+++.|+..|+.-. ....+
T Consensus 91 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 154 (322)
T 3eie_A 91 --------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQG 154 (322)
T ss_dssp --------TGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGG--------TSCCC
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhcccc--------ccCCc
Confidence 4444332 4455666777889999999998853 56888999887411 12356
Q ss_pred eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 584 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 584 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
++||+|||... .+.+.+++||+..+.|++++.++..+|++..+ ....
T Consensus 155 v~vi~atn~~~------------------------~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~-------~~~~-- 201 (322)
T 3eie_A 155 VLVLGATNIPW------------------------QLDSAIRRRFERRIYIPLPDLAARTTMFEINV-------GDTP-- 201 (322)
T ss_dssp EEEEEEESCGG------------------------GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHH-------TTCC--
T ss_pred eEEEEecCChh------------------------hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHh-------ccCC--
Confidence 78889999643 36789999999999999999999999966544 2222
Q ss_pred cccchHHHHHHHHhcccccccccccccc
Q psy14504 664 LKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 664 l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
..+++..++.|+.. ...|..+||...
T Consensus 202 ~~~~~~~l~~la~~--t~g~sg~di~~l 227 (322)
T 3eie_A 202 CVLTKEDYRTLGAM--TEGYSGSDIAVV 227 (322)
T ss_dssp CCCCHHHHHHHHHT--TTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHH--cCCCCHHHHHHH
Confidence 56778889999883 345666777765
No 70
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.71 E-value=4.8e-17 Score=179.49 Aligned_cols=189 Identities=23% Similarity=0.224 Sum_probs=143.5
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHHc-----CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 35 TEKARLGKLDPVIGRDDEIRRAIQVLQR-----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 35 ~e~~rp~~l~~lvG~~~~i~~l~~~l~~-----~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
.++++|.+|++++|++..++.+...+.. ....++||+||||||||++|+++++.+ +.+++.+++.
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~----------~~~~~~~~~~ 72 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHEL----------GVNLRVTSGP 72 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHH----------TCCEEEECTT
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEecc
Confidence 4678999999999999998888776652 456799999999999999999999988 6677777765
Q ss_pred hhhcCccccccHHHHHHHHHHHHHh-cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC----------------
Q psy14504 110 LLLAGTKYRGEFEDRLKKILKEISN-NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------- 172 (951)
Q Consensus 110 ~l~~~~~~~g~~~~~l~~~~~~a~~-~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~---------------- 172 (951)
.+.. ...++..+.. ...+.+|||||++.+.. ..++.|+..++..
T Consensus 73 ~~~~-----------~~~l~~~l~~~~~~~~~l~lDEi~~l~~--------~~~~~L~~~l~~~~~~~v~~~~~~~~~~~ 133 (324)
T 1hqc_A 73 AIEK-----------PGDLAAILANSLEEGDILFIDEIHRLSR--------QAEEHLYPAMEDFVMDIVIGQGPAARTIR 133 (324)
T ss_dssp TCCS-----------HHHHHHHHTTTCCTTCEEEETTTTSCCH--------HHHHHHHHHHHHSEEEECCSSSSSCCCEE
T ss_pred ccCC-----------hHHHHHHHHHhccCCCEEEEECCccccc--------chHHHHHHHHHhhhhHHhccccccccccc
Confidence 4421 1222223322 34567999999999853 3455566665432
Q ss_pred ----cEEEEEeecchHHHHhhhcCHHHhhcce-EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 173 ----ELHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 173 ----~i~vI~at~~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
.+++|++||.+. .+++++.+||. .+.|++|+.+++..+++..+.. .+..++++++..++..+.+.
T Consensus 134 ~~~~~~~~i~~t~~~~-----~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~G~- 203 (324)
T 1hqc_A 134 LELPRFTLIGATTRPG-----LITAPLLSRFGIVEHLEYYTPEELAQGVMRDARL----LGVRITEEAALEIGRRSRGT- 203 (324)
T ss_dssp EECCCCEEEEEESCCS-----SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHHHHHHHSCSC-
T ss_pred cCCCCEEEEEeCCCcc-----cCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHHccCC-
Confidence 478999999887 78899999996 6999999999999999887764 35778999999998886554
Q ss_pred ccCCCchhHHHHHHHHHHHh
Q psy14504 248 SDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 248 ~~~~~p~~a~~ll~~a~~~~ 267 (951)
|+.+..+++.+...+
T Consensus 204 -----~r~l~~~l~~~~~~a 218 (324)
T 1hqc_A 204 -----MRVAKRLFRRVRDFA 218 (324)
T ss_dssp -----HHHHHHHHHHHTTTS
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 478888887775544
No 71
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.71 E-value=2.5e-16 Score=172.61 Aligned_cols=195 Identities=17% Similarity=0.287 Sum_probs=141.7
Q ss_pred ccCCChHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~---~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.|+|++.+++.+...+..... .......|..++||+||||||||++|+++|+.+. +.+++.++++++...
T Consensus 12 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~--~~~~~~i~~~~l~~~---- 85 (322)
T 1xwi_A 12 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK---- 85 (322)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTT--SCEEEEEECCSSCCS----
T ss_pred HHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcC--CCcEEEEEhHHHHhh----
Confidence 5688999999999888753211 1111123445899999999999999999999873 457888888876542
Q ss_pred cccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeEeecCC
Q psy14504 517 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 583 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 583 (951)
|.|..+. +.++..++...++||||||+|.+. ..+++.|+..|+.-. ....+
T Consensus 86 --------~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~--------~~~~~ 149 (322)
T 1xwi_A 86 --------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDG 149 (322)
T ss_dssp --------SCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSS--------SCCTT
T ss_pred --------hhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhccc--------ccCCC
Confidence 4454433 445556667788999999999883 357788888888411 12357
Q ss_pred eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 584 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 584 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
++||+|||.+. .+.+.+++||+..+.+++++.++..+|+...+ ....
T Consensus 150 v~vI~atn~~~------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-------~~~~-- 196 (322)
T 1xwi_A 150 ILVLGATNIPW------------------------VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHL-------GTTQ-- 196 (322)
T ss_dssp EEEEEEESCTT------------------------TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH-------TTCC--
T ss_pred EEEEEecCCcc------------------------cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHH-------hcCC--
Confidence 88999999753 25788999999999999999999999966544 2223
Q ss_pred cccchHHHHHHHHhcccccccccccccc
Q psy14504 664 LKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 664 l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
..+++..++.|+. ....|..+||...
T Consensus 197 ~~l~~~~l~~la~--~t~G~sgadl~~l 222 (322)
T 1xwi_A 197 NSLTEADFRELGR--KTDGYSGADISII 222 (322)
T ss_dssp BCCCHHHHHHHHH--TCTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHH--HcCCCCHHHHHHH
Confidence 4567888999988 3445666777766
No 72
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.71 E-value=4.2e-17 Score=186.79 Aligned_cols=201 Identities=20% Similarity=0.313 Sum_probs=148.9
Q ss_pred hcCCCCCccccHHHHHHHHHHHH---c---------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ---R---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~---~---------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
.+.+|++++|+++.+..+..+.. . ..+.+++|+||||||||+||+++|..+ +.+++.+
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~----------~~~~i~i 95 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITA 95 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHT----------TCCEEEE
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 56789999999987766665432 2 224579999999999999999999987 6788889
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC---Cch---hHHhhhhhhcc----CCcEEE
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GSI---DAGNMLKPELS----RGELHC 176 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~~---~~~~~L~~~le----~~~i~v 176 (951)
+.+.+. ..+.|.....+..+|+.+. ...|+|+||||+|.+....... +.. ...+.|+..|+ +..+++
T Consensus 96 ~g~~~~--~~~~g~~~~~v~~lfq~a~-~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viv 172 (499)
T 2dhr_A 96 SGSDFV--EMFVGVGAARVRDLFETAK-RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 172 (499)
T ss_dssp EGGGGT--SSCTTHHHHHHHHHTTTSS-SSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEE
T ss_pred ehhHHH--HhhhhhHHHHHHHHHHHHH-hcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEE
Confidence 988776 4567888888888888875 2357899999999987654321 111 23344544443 345889
Q ss_pred EEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHH-HHHHHHHhhhhcccCCC
Q psy14504 177 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPA-IVAASELSYRYISDRFM 252 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~-l~~~~~~s~~~~~~~~~ 252 (951)
|++||.++ .+|++++| ||+. |.|+.|+.++|.+||+.+++. ..+++++ +..++..+.++.
T Consensus 173 iAatn~p~-----~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~------~~l~~dv~l~~lA~~t~G~~----- 236 (499)
T 2dhr_A 173 MAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG------KPLAEDVDLALLAKRTPGFV----- 236 (499)
T ss_dssp EECCSCGG-----GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSS------SCCCCSSTTHHHHTTSCSCC-----
T ss_pred EEecCChh-----hcCcccccccccceEEecCCCCHHHHHHHHHHHHhc------CCCChHHHHHHHHHhcCCCC-----
Confidence 99999998 68999998 8885 999999999999999866543 2333332 556666665544
Q ss_pred chhHHHHHHHHHHHhH
Q psy14504 253 PDKAIDLIDEAAAKIK 268 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~ 268 (951)
++++..++.+|+..+.
T Consensus 237 gadL~~lv~~Aa~~A~ 252 (499)
T 2dhr_A 237 GADLENLLNEAALLAA 252 (499)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6788888988876544
No 73
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.71 E-value=1.7e-16 Score=173.86 Aligned_cols=207 Identities=19% Similarity=0.332 Sum_probs=143.9
Q ss_pred CccccHHHHHHHHHHHHc--------------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh
Q psy14504 45 PVIGRDDEIRRAIQVLQR--------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL 110 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~--------------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 110 (951)
.++|++..++.+...+.. ..+.++||+||||||||++|+++|+.+ +.+++.++++.
T Consensus 16 ~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l----------~~~~~~i~~~~ 85 (310)
T 1ofh_A 16 HIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA----------NAPFIKVEATK 85 (310)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHH----------TCCEEEEEGGG
T ss_pred hcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEcchh
Confidence 589999999988876654 457899999999999999999999998 77889999887
Q ss_pred hhcCcccccc-HHHHHHHHHHHH----HhcCCCeEEEEecccccccCCCCCCc----hhHHhhhhhhccCC---------
Q psy14504 111 LLAGTKYRGE-FEDRLKKILKEI----SNNQKDIIIFIDELHTMIGTGKVEGS----IDAGNMLKPELSRG--------- 172 (951)
Q Consensus 111 l~~~~~~~g~-~~~~l~~~~~~a----~~~~~~~iL~iDEid~l~~~~~~~~~----~~~~~~L~~~le~~--------- 172 (951)
+... .+.|. ....+..++..+ .....++||||||+|.+.+.....+. ...++.|+.+++..
T Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~ 164 (310)
T 1ofh_A 86 FTEV-GYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMV 164 (310)
T ss_dssp GSSC-CSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEE
T ss_pred cccC-CccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccc
Confidence 6531 23332 223455555422 11112569999999999875432221 12366777777654
Q ss_pred ---cEEEEEeec----chHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHH----HHHHhhhh---hcC--CCCChHH
Q psy14504 173 ---ELHCIGATT----LNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILR----GLQKKYEV---HHG--VEITDPA 235 (951)
Q Consensus 173 ---~i~vI~at~----~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~----~~~~~~~~---~~~--~~i~~~~ 235 (951)
.+++|++++ .+. .+++++.+||+. +.|++|+.+++..|++ .+...+.. ..+ +.+++++
T Consensus 165 ~~~~~~~i~~~~~~~~~~~-----~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a 239 (310)
T 1ofh_A 165 KTDHILFIASGAFQVARPS-----DLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDA 239 (310)
T ss_dssp ECTTCEEEEEECCSSSCGG-----GSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHH
T ss_pred cCCcEEEEEcCCcccCCcc-----cCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHH
Confidence 678888863 343 789999999985 9999999999999998 33332211 122 4689999
Q ss_pred HHHHHHHhhhhc--ccCCCchhHHHHHHHHHHHh
Q psy14504 236 IVAASELSYRYI--SDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 236 l~~~~~~s~~~~--~~~~~p~~a~~ll~~a~~~~ 267 (951)
++.++..+...- .....++.+.++++.++...
T Consensus 240 ~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~ 273 (310)
T 1ofh_A 240 VKKIAEAAFRVNEKTENIGARRLHTVMERLMDKI 273 (310)
T ss_dssp HHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHH
T ss_pred HHHHHHHhhhhcccccccCcHHHHHHHHHHHHhh
Confidence 999998874210 11334577788887766443
No 74
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.70 E-value=4.1e-16 Score=165.45 Aligned_cols=204 Identities=20% Similarity=0.311 Sum_probs=144.4
Q ss_pred HHhcCCCCCccccHHHHHHHHHHHH---c---------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEE
Q psy14504 37 KARLGKLDPVIGRDDEIRRAIQVLQ---R---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 104 (951)
Q Consensus 37 ~~rp~~l~~lvG~~~~i~~l~~~l~---~---------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~ 104 (951)
..++.+|++++|.+..+..+..+.. . ..+.+++|+|||||||||+++++|..+ +..++
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~----------~~~~i 78 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFI 78 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHT----------TCCEE
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHh----------CCCEE
Confidence 3456689999999977655544322 1 224569999999999999999999987 56778
Q ss_pred EEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC---Cc---hhHHhhhhhhcc----CCcE
Q psy14504 105 LLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GS---IDAGNMLKPELS----RGEL 174 (951)
Q Consensus 105 ~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~---~~~~~~L~~~le----~~~i 174 (951)
.++...+. ..+.+.....+..+|+.+. ...|+++|+||+|.+....... .. ....+.+...++ +..+
T Consensus 79 ~~~~~~~~--~~~~~~~~~~i~~~~~~~~-~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~ 155 (254)
T 1ixz_A 79 TASGSDFV--EMFVGVGAARVRDLFETAK-RHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAI 155 (254)
T ss_dssp EEEHHHHH--HSCTTHHHHHHHHHHHHHT-TSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCE
T ss_pred EeeHHHHH--HHHhhHHHHHHHHHHHHHH-hcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCE
Confidence 88877665 3345667777888898875 3357899999999987543211 11 122334444443 3357
Q ss_pred EEEEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChH-HHHHHHHHhhhhcccC
Q psy14504 175 HCIGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDP-AIVAASELSYRYISDR 250 (951)
Q Consensus 175 ~vI~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~-~l~~~~~~s~~~~~~~ 250 (951)
+++++|+.++ .+|++++| ||+. +.++.|+.++|.+||+.+.+.. .++++ .+..++..+.+|.
T Consensus 156 i~~a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~------~~~~~~~~~~la~~~~G~~--- 221 (254)
T 1ixz_A 156 VVMAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGK------PLAEDVDLALLAKRTPGFV--- 221 (254)
T ss_dssp EEEEEESCGG-----GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTS------CBCTTCCHHHHHHTCTTCC---
T ss_pred EEEEccCCch-----hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCC------CCCcccCHHHHHHHcCCCC---
Confidence 8888999888 68999999 8986 9999999999999998776532 33333 2566777766655
Q ss_pred CCchhHHHHHHHHHHHhHH
Q psy14504 251 FMPDKAIDLIDEAAAKIKI 269 (951)
Q Consensus 251 ~~p~~a~~ll~~a~~~~~~ 269 (951)
++++..++..|+..+..
T Consensus 222 --~~dl~~~~~~a~~~a~~ 238 (254)
T 1ixz_A 222 --GADLENLLNEAALLAAR 238 (254)
T ss_dssp --HHHHHHHHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHH
Confidence 67888888888765543
No 75
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.70 E-value=2e-15 Score=200.88 Aligned_cols=140 Identities=19% Similarity=0.254 Sum_probs=100.7
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHh----------
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISN---------- 134 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~---------- 134 (951)
..++||+||||||||++|+.+.... .+..++.++.++... ...+...+.....
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~---------~~~~~~~infsa~ts--------~~~~~~~i~~~~~~~~~~~g~~~ 1329 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNS---------SLYDVVGINFSKDTT--------TEHILSALHRHTNYVTTSKGLTL 1329 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSC---------SSCEEEEEECCTTCC--------HHHHHHHHHHHBCCEEETTTEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcC---------CCCceEEEEeecCCC--------HHHHHHHHHHHhhhccccCCccc
Confidence 3799999999999999996655432 156777777655431 1234444444310
Q ss_pred ----cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC--------------cEEEEEeecchHHHHhhhcCHHHh
Q psy14504 135 ----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--------------ELHCIGATTLNEYRQYIEKDAAFE 196 (951)
Q Consensus 135 ----~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~--------------~i~vI~at~~~~~~~~~~~~~~l~ 196 (951)
.+.++||||||++.. ..+..|.+...+.|++.++.+ ++.+|+|||++...+-..++++|+
T Consensus 1330 ~P~~~gk~~VlFiDEinmp--~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1330 LPKSDIKNLVLFCDEINLP--KLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp EEBSSSSCEEEEEETTTCS--CCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred cCCCCCceEEEEecccccc--cccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Confidence 233579999999963 333445566777888888643 378999999984222347899999
Q ss_pred hcceEEEeeCCCHHHHHHHHHHHHHhh
Q psy14504 197 RRFQKILVEEPDIEETISILRGLQKKY 223 (951)
Q Consensus 197 ~Rf~~i~~~~p~~~er~~il~~~~~~~ 223 (951)
|||..+.++.|+.+++..|+..++...
T Consensus 1408 Rrf~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1408 RHAAILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp TTEEEEECCCCTTTHHHHHHHHHHHHH
T ss_pred heeeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 999889999999999999999887653
No 76
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.70 E-value=4.6e-16 Score=172.64 Aligned_cols=190 Identities=16% Similarity=0.201 Sum_probs=140.8
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
..++|++.+++.+...+...... ..+..++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 29 ~~iiG~~~~~~~l~~~l~~~~~~----~~~~~~vll~G~~GtGKT~la~~ia~~~---~~~~~~~~~~~~~~~------- 94 (338)
T 3pfi_A 29 DGYIGQESIKKNLNVFIAAAKKR----NECLDHILFSGPAGLGKTTLANIISYEM---SANIKTTAAPMIEKS------- 94 (338)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHT----TSCCCCEEEECSTTSSHHHHHHHHHHHT---TCCEEEEEGGGCCSH-------
T ss_pred HHhCChHHHHHHHHHHHHHHHhc----CCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEecchhccch-------
Confidence 56899999999999999876421 1233469999999999999999999988 668888888654321
Q ss_pred CCCCCCccccccchhHHHHH-hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCC-------CeEeecCCeEEEEecC
Q psy14504 520 GAPPGYIGYEEGGYLTEIVR-RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-------GRTINFRNTIIVMTSN 591 (951)
Q Consensus 520 g~~~~~~g~~~~~~l~~~~~-~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~-------g~~~~~~~~iiI~ttn 591 (951)
+.+...+. .+.+++||||||+.+++..++.|++.++++.+.... ...++..++++|++||
T Consensus 95 ------------~~~~~~~~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn 162 (338)
T 3pfi_A 95 ------------GDLAAILTNLSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATT 162 (338)
T ss_dssp ------------HHHHHHHHTCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEES
T ss_pred ------------hHHHHHHHhccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCC
Confidence 12333333 366799999999999999999999999987654221 1223344688999999
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 671 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 671 (951)
.. ..+.++|++||+.++.|++++.+++..++...+.. .+ +.++++++
T Consensus 163 ~~------------------------~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~-------~~--~~~~~~~~ 209 (338)
T 3pfi_A 163 RA------------------------GMLSNPLRDRFGMQFRLEFYKDSELALILQKAALK-------LN--KTCEEKAA 209 (338)
T ss_dssp CG------------------------GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------TT--CEECHHHH
T ss_pred Cc------------------------cccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHh-------cC--CCCCHHHH
Confidence 62 24789999999999999999999999986655433 33 67899999
Q ss_pred HHHHHhcccccccccccccc
Q psy14504 672 KKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 672 ~~L~~~~~~~~~g~~dlhg~ 691 (951)
+.|+. . +..++|.+...
T Consensus 210 ~~l~~-~--~~G~~r~l~~~ 226 (338)
T 3pfi_A 210 LEIAK-R--SRSTPRIALRL 226 (338)
T ss_dssp HHHHH-T--TTTCHHHHHHH
T ss_pred HHHHH-H--HCcCHHHHHHH
Confidence 99988 2 33444554444
No 77
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.69 E-value=2.3e-16 Score=175.38 Aligned_cols=194 Identities=16% Similarity=0.280 Sum_probs=138.7
Q ss_pred ccCCChHHHHHHHHHHHHhhh---cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSR---SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~---~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.|+|++.+++.+...+.... ........|..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 51 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~---~~~~~~v~~~~l~~~---- 123 (355)
T 2qp9_X 51 EDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEA---NSTFFSVSSSDLVSK---- 123 (355)
T ss_dssp GGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHH---TCEEEEEEHHHHHSC----
T ss_pred HHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh---CCCEEEeeHHHHhhh----
Confidence 568899999999998875321 0011112344479999999999999999999999 678999988876542
Q ss_pred cccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHhhcceeecCCCeEeecCC
Q psy14504 517 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRTINFRN 583 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~~~~~~ 583 (951)
|.|..+. +.++..++...++||||||+|.+.+ .+++.|+..|+.-. ....+
T Consensus 124 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~--------~~~~~ 187 (355)
T 2qp9_X 124 --------WMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVG--------NDSQG 187 (355)
T ss_dssp --------C---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC-----------CC
T ss_pred --------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccc--------ccCCC
Confidence 3443332 3445555667789999999999873 46888999887411 12356
Q ss_pred eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 584 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 584 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
++||+|||... .+.+.+++||+..+.+++++.++..+|+...+ ...+
T Consensus 188 v~vI~atn~~~------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-------~~~~-- 234 (355)
T 2qp9_X 188 VLVLGATNIPW------------------------QLDSAIRRRFERRIYIPLPDLAARTTMFEINV-------GDTP-- 234 (355)
T ss_dssp EEEEEEESCGG------------------------GSCHHHHHTCCEEEECCCCCHHHHHHHHHHHH-------TTSC--
T ss_pred eEEEeecCCcc------------------------cCCHHHHcccCEEEEeCCcCHHHHHHHHHHHH-------hhCC--
Confidence 88999999743 35788999999999999999999999966544 3223
Q ss_pred cccchHHHHHHHHhcccccccccccccc
Q psy14504 664 LKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 664 l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
..+++..++.|+.. ...|..+||...
T Consensus 235 ~~~~~~~l~~la~~--t~G~sg~dl~~l 260 (355)
T 2qp9_X 235 SVLTKEDYRTLGAM--TEGYSGSDIAVV 260 (355)
T ss_dssp BCCCHHHHHHHHHH--TTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHH--cCCCCHHHHHHH
Confidence 45678888999884 344566788776
No 78
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.69 E-value=1.6e-16 Score=171.71 Aligned_cols=157 Identities=15% Similarity=0.161 Sum_probs=111.7
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---hcCCCe
Q psy14504 63 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS---NNQKDI 139 (951)
Q Consensus 63 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~---~~~~~~ 139 (951)
+.+.++||+||||||||++|+++|+.+ +.+++.++++.+. ..+.|+.+..++.+|..+. +...|+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l----------~~~~i~v~~~~l~--~~~~g~~~~~i~~~f~~a~~~~~~~~~~ 101 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAAEIIRKGNMC 101 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHH----------TCCCEEEEHHHHH--CC---HHHHHHHHHHHHHHHHHTTSSCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEEeHHHhh--hccCchhHHHHHHHHHHHHHHHhcCCCe
Confidence 445678999999999999999999999 8899999999987 5688999999999998883 245688
Q ss_pred EEEEecccccccCCCCC-----CchhHHhhhhhhcc---------------CCcEEEEEeecchHHHHhhhcCHHHhh--
Q psy14504 140 IIFIDELHTMIGTGKVE-----GSIDAGNMLKPELS---------------RGELHCIGATTLNEYRQYIEKDAAFER-- 197 (951)
Q Consensus 140 iL~iDEid~l~~~~~~~-----~~~~~~~~L~~~le---------------~~~i~vI~at~~~~~~~~~~~~~~l~~-- 197 (951)
||||||+|.+.+..... ....+.+.|+.+++ ..++++|+|||.++ .++++++|
T Consensus 102 vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~-----~ld~al~R~~ 176 (293)
T 3t15_A 102 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFS-----TLYAPLIRDG 176 (293)
T ss_dssp CEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCC-----C--CHHHHHH
T ss_pred EEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcc-----cCCHHHhCCC
Confidence 99999999998743221 12245567777763 34689999999987 88999997
Q ss_pred cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 198 RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 198 Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
||+. +. .|+.++|.+|++.+... .+ ++ ...++.++.+|.
T Consensus 177 R~d~~i~--~P~~~~r~~Il~~~~~~----~~--~~---~~~l~~~~~~~~ 216 (293)
T 3t15_A 177 RMEKFYW--APTREDRIGVCTGIFRT----DN--VP---AEDVVKIVDNFP 216 (293)
T ss_dssp HEEEEEE--CCCHHHHHHHHHHHHGG----GC--CC---HHHHHHHHHHSC
T ss_pred CCceeEe--CcCHHHHHHHHHHhccC----CC--CC---HHHHHHHhCCCC
Confidence 8886 54 57999999999977653 22 33 334455666654
No 79
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.68 E-value=4.1e-15 Score=164.11 Aligned_cols=191 Identities=22% Similarity=0.316 Sum_probs=138.0
Q ss_pred hHHHHhcCCCCCccccHHHHHHHHHHHHc-----CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 34 LTEKARLGKLDPVIGRDDEIRRAIQVLQR-----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 34 l~e~~rp~~l~~lvG~~~~i~~l~~~l~~-----~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
|.++++|.+|++++|++..++.+...+.. ....+++|+|||||||||+++++|+.+ ++++.....
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l----------~~~~~~~sg 84 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASEL----------QTNIHVTSG 84 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHH----------TCCEEEEET
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEec
Confidence 48889999999999999888887766543 345789999999999999999999998 555544432
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC-----------------
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR----------------- 171 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~----------------- 171 (951)
..... ...+..++.. ...+.|+||||+|.+.+ ...+.|...++.
T Consensus 85 ~~~~~--------~~~l~~~~~~---~~~~~v~~iDE~~~l~~--------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~ 145 (334)
T 1in4_A 85 PVLVK--------QGDMAAILTS---LERGDVLFIDEIHRLNK--------AVEELLYSAIEDFQIDIMIGKGPSAKSIR 145 (334)
T ss_dssp TTCCS--------HHHHHHHHHH---CCTTCEEEEETGGGCCH--------HHHHHHHHHHHTSCCCC------------
T ss_pred hHhcC--------HHHHHHHHHH---ccCCCEEEEcchhhcCH--------HHHHHHHHHHHhcccceeeccCccccccc
Confidence 22110 1123333332 22356999999999864 223333333321
Q ss_pred ---CcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhc
Q psy14504 172 ---GELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYI 247 (951)
Q Consensus 172 ---~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~ 247 (951)
..+.++++|+.+. .+++++++||.. +.|++|+.+++.+|++..... .++.++++++..++..+.+.
T Consensus 146 ~~l~~~~li~at~~~~-----~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~----~~~~~~~~~~~~ia~~~~G~- 215 (334)
T 1in4_A 146 IDIQPFTLVGATTRSG-----LLSSPLRSRFGIILELDFYTVKELKEIIKRAASL----MDVEIEDAAAEMIAKRSRGT- 215 (334)
T ss_dssp ---CCCEEEEEESCGG-----GSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH----TTCCBCHHHHHHHHHTSTTC-
T ss_pred ccCCCeEEEEecCCcc-----cCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH----cCCCcCHHHHHHHHHhcCCC-
Confidence 1367788888887 789999999985 899999999999999988764 36788999999998877654
Q ss_pred ccCCCchhHHHHHHHHHHHhH
Q psy14504 248 SDRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 248 ~~~~~p~~a~~ll~~a~~~~~ 268 (951)
|+.+.++++.+...+.
T Consensus 216 -----~R~a~~ll~~~~~~a~ 231 (334)
T 1in4_A 216 -----PRIAIRLTKRVRDMLT 231 (334)
T ss_dssp -----HHHHHHHHHHHHHHHH
T ss_pred -----hHHHHHHHHHHHHHHH
Confidence 4888888887765443
No 80
>2ie4_C PP2A-alpha;, serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform; protein-protein complex, heat repeat, signaling protein; HET: OKA; 2.60A {Homo sapiens} SCOP: d.159.1.3 PDB: 2npp_C* 3dw8_C* 3k7v_C* 3k7w_C* 3c5w_C 2ie3_C* 3fga_C* 2iae_C* 3p71_C* 2nym_C* 2nyl_C*
Probab=99.68 E-value=1.1e-16 Score=171.55 Aligned_cols=151 Identities=21% Similarity=0.318 Sum_probs=108.8
Q ss_pred cCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeec
Q psy14504 635 RYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFL 714 (951)
Q Consensus 635 ~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~ 714 (951)
..++++++.+++.....-+ ....--+.+ -.+.+.+|||||++.+|.++++.+++. +.+.++|+
T Consensus 21 ~~l~~~~~~~l~~~~~~il----~~e~~~~~~------------~~~i~viGDIHG~~~~L~~ll~~~~~~-~~~~~vfl 83 (309)
T 2ie4_C 21 KQLSESQVKSLCEKAKEIL----TKESNVQEV------------RCPVTVCGDVHGQFHDLMELFRIGGKS-PDTNYLFM 83 (309)
T ss_dssp CCCCHHHHHHHHHHHHHHH----HHSCTTEEE------------CSSEEEECCCTTCHHHHHHHHHHHCCT-TTSCEEEC
T ss_pred CCCCHHHHHHHHHHHHHHH----HhCCCEEec------------cCCEEEEecCCCCHHHHHHHHHHcCCC-CCCEEEEe
Confidence 3677888888755443332 322211121 245788999999999999999999874 55778999
Q ss_pred ccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhcccCCccccHHHhhCCCCHHHHHHHHhcCCceE-E
Q psy14504 715 GDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAI-Y 789 (951)
Q Consensus 715 gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~ 789 (951)
||++|||+.+.+|+++++++ +.++++|+||||.+++....+.. .+....+-.....+.+.+|++.||++. .
T Consensus 84 GD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~~gf~----~e~~~~yg~~~l~~~~~~~~~~LPl~~~i 159 (309)
T 2ie4_C 84 GDYVDRGYYSVETVTLLVALKVRYRERITILRGNHESRQITQVYGFY----DECLRKYGNANVWKYFTDLFDYLPLTALV 159 (309)
T ss_dssp SCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSTTGGGTSSHH----HHHHHHSSSTHHHHHHHHHTTSSCSCEEE
T ss_pred CCccCCCCChHHHHHHHHHHHhhCCCcEEEEeCCCCHHHHhhhhhhh----HHHHhhcccHHHHHHHHHHHHhCCceEEE
Confidence 99999999999999999987 45789999999998765321110 111222212223467889999999985 5
Q ss_pred eCCEEEEecccCcCCCH
Q psy14504 790 YKKYLMIHAGVAKQWTA 806 (951)
Q Consensus 790 ~~~~~~vHAG~~p~~~~ 806 (951)
.+++++||||++|.|..
T Consensus 160 ~~~il~vHgGl~p~~~~ 176 (309)
T 2ie4_C 160 DGQIFCLHGGLSPSIDT 176 (309)
T ss_dssp TTTEEECSSCCCTTCCS
T ss_pred cCcEEEECCCCCCcccC
Confidence 67899999999999863
No 81
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.67 E-value=4.2e-16 Score=172.32 Aligned_cols=212 Identities=19% Similarity=0.170 Sum_probs=149.5
Q ss_pred HhhcchHHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 29 KYTIDLTEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 29 ~~~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
.+..+|.++++|..+++++|++..++.+...+... .++||+||||||||++|+++|+.+ +.+++.+++
T Consensus 12 ~~~~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~----------~~~~~~i~~ 79 (331)
T 2r44_A 12 LYYRNKIKEVIDEVGKVVVGQKYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTM----------DLDFHRIQF 79 (331)
T ss_dssp HHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHT----------TCCEEEEEC
T ss_pred HHHHHHHHHHHHHhccceeCcHHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHh----------CCCeEEEec
Confidence 34567999999999999999999999998877764 699999999999999999999988 566666665
Q ss_pred hh------hhcCccc---cccHHHHHHHHHHHHHhcCC---CeEEEEecccccccCCCCCCchhHHhhhhhhccCC----
Q psy14504 109 AL------LLAGTKY---RGEFEDRLKKILKEISNNQK---DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---- 172 (951)
Q Consensus 109 ~~------l~~~~~~---~g~~~~~l~~~~~~a~~~~~---~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~---- 172 (951)
.. +.....+ .|.+. . ..+ ..||||||++.+.+ ..++.|+..++.+
T Consensus 80 ~~~~~~~~l~g~~~~~~~~~~~~---------~--~~g~l~~~vl~iDEi~~~~~--------~~~~~Ll~~l~~~~~~~ 140 (331)
T 2r44_A 80 TPDLLPSDLIGTMIYNQHKGNFE---------V--KKGPVFSNFILADEVNRSPA--------KVQSALLECMQEKQVTI 140 (331)
T ss_dssp CTTCCHHHHHEEEEEETTTTEEE---------E--EECTTCSSEEEEETGGGSCH--------HHHHHHHHHHHHSEEEE
T ss_pred CCCCChhhcCCceeecCCCCceE---------e--ccCcccccEEEEEccccCCH--------HHHHHHHHHHhcCceee
Confidence 21 1110000 01100 0 011 25999999999743 5566777777532
Q ss_pred ---------cEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhh------------------
Q psy14504 173 ---------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYE------------------ 224 (951)
Q Consensus 173 ---------~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~------------------ 224 (951)
.+++|+|+|+.++.....+++++++||.. +.+++|+.+++.+|++.......
T Consensus 141 ~g~~~~~~~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~ 220 (331)
T 2r44_A 141 GDTTYPLDNPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRN 220 (331)
T ss_dssp TTEEEECCSSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHH
T ss_pred CCEEEECCCCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHH
Confidence 56788888876533333489999999995 99999999999999987654311
Q ss_pred hhcCCCCChHHHHHHHHHhhhhccc--------------CCCchhHHHHHHHHHHHhHHhh
Q psy14504 225 VHHGVEITDPAIVAASELSYRYISD--------------RFMPDKAIDLIDEAAAKIKIEI 271 (951)
Q Consensus 225 ~~~~~~i~~~~l~~~~~~s~~~~~~--------------~~~p~~a~~ll~~a~~~~~~~~ 271 (951)
...++.++++++..++.++...... ...++.+..++..+.+.+....
T Consensus 221 ~~~~v~~~~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g 281 (331)
T 2r44_A 221 EINKVTISESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNN 281 (331)
T ss_dssp HHHTCBCCHHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCCCHHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcC
Confidence 1136778888888888766433222 2356777788877766655543
No 82
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.67 E-value=1.6e-15 Score=163.21 Aligned_cols=201 Identities=20% Similarity=0.314 Sum_probs=143.0
Q ss_pred hcCCCCCccccHHHHHHHHHHHH---c---------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQ---R---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~---~---------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
.+.+|++++|.+..+..+..+.. . ..+.+++|+|||||||||++++++..+ ...++.+
T Consensus 35 ~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~----------~~~~i~~ 104 (278)
T 1iy2_A 35 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEA----------RVPFITA 104 (278)
T ss_dssp CCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHT----------TCCEEEE
T ss_pred CCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHc----------CCCEEEe
Confidence 56789999999987666654332 1 224569999999999999999999987 4677888
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC---Cc---hhHHhhhhhhcc----CCcEEE
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE---GS---IDAGNMLKPELS----RGELHC 176 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~---~~---~~~~~~L~~~le----~~~i~v 176 (951)
+...+. ..+.+.....+..+|+.+.. ..|+++|+||++.+....... .. ....+.+...++ +..+++
T Consensus 105 ~~~~~~--~~~~~~~~~~i~~~~~~~~~-~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~ 181 (278)
T 1iy2_A 105 SGSDFV--EMFVGVGAARVRDLFETAKR-HAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVV 181 (278)
T ss_dssp EHHHHH--HSTTTHHHHHHHHHHHHHHT-SCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEE
T ss_pred cHHHHH--HHHhhHHHHHHHHHHHHHHh-cCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEE
Confidence 877665 33456677778888988863 457899999999886543211 11 122233333443 234788
Q ss_pred EEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChH-HHHHHHHHhhhhcccCCC
Q psy14504 177 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDP-AIVAASELSYRYISDRFM 252 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~-~l~~~~~~s~~~~~~~~~ 252 (951)
+++|+.++ .+|++++| ||+. +.|+.|+.++|.+||+.+.+. ..++++ .+..++..+.++.
T Consensus 182 ~a~t~~p~-----~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~------~~~~~~~~~~~la~~~~G~~----- 245 (278)
T 1iy2_A 182 MAATNRPD-----ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG------KPLAEDVDLALLAKRTPGFV----- 245 (278)
T ss_dssp EEEESCTT-----SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT------SCBCTTCCHHHHHHTCTTCC-----
T ss_pred EEecCCch-----hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc------CCCCcccCHHHHHHHcCCCC-----
Confidence 89999987 79999998 8885 999999999999999877653 233333 2566677666654
Q ss_pred chhHHHHHHHHHHHhH
Q psy14504 253 PDKAIDLIDEAAAKIK 268 (951)
Q Consensus 253 p~~a~~ll~~a~~~~~ 268 (951)
++++..++..|+..+.
T Consensus 246 ~~dl~~l~~~a~~~a~ 261 (278)
T 1iy2_A 246 GADLENLLNEAALLAA 261 (278)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6778888888876554
No 83
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.67 E-value=2e-16 Score=152.05 Aligned_cols=143 Identities=12% Similarity=0.088 Sum_probs=110.7
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccC
Q psy14504 441 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 520 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 520 (951)
.++|++.+++.+...+...... ..++||+||||||||++|++|++.....+.+|+ ++|+.+...
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~-------~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-------- 65 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSET-------DIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-------- 65 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTC-------CSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS--------
T ss_pred CceeCCHHHHHHHHHHHHHhCC-------CCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc--------
Confidence 4789999999999988765421 126999999999999999999998877778898 999875442
Q ss_pred CCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhh
Q psy14504 521 APPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 600 (951)
Q Consensus 521 ~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 600 (951)
......+..+.+++|||||+|.+++..|..|+.+|+. ...++.+|+|||.+...+..
T Consensus 66 -----------~~~~~~~~~a~~g~l~ldei~~l~~~~q~~Ll~~l~~-----------~~~~~~~I~~t~~~~~~~~~- 122 (145)
T 3n70_A 66 -----------PQLNDFIALAQGGTLVLSHPEHLTREQQYHLVQLQSQ-----------EHRPFRLIGIGDTSLVELAA- 122 (145)
T ss_dssp -----------SCHHHHHHHHTTSCEEEECGGGSCHHHHHHHHHHHHS-----------SSCSSCEEEEESSCHHHHHH-
T ss_pred -----------hhhhcHHHHcCCcEEEEcChHHCCHHHHHHHHHHHhh-----------cCCCEEEEEECCcCHHHHHH-
Confidence 1234455556678999999999999999999999964 23456799999987654322
Q ss_pred ccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCC
Q psy14504 601 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN 638 (951)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~ 638 (951)
...|+++|++|+.. .|.+|||.
T Consensus 123 ----------------~~~~~~~L~~rl~~~~i~lPpLR 145 (145)
T 3n70_A 123 ----------------SNHIIAELYYCFAMTQIACLPLT 145 (145)
T ss_dssp ----------------HSCCCHHHHHHHHHHEEECCCCC
T ss_pred ----------------cCCCCHHHHHHhcCCEEeCCCCC
Confidence 45799999999855 68888873
No 84
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.66 E-value=1.3e-15 Score=174.43 Aligned_cols=195 Identities=17% Similarity=0.287 Sum_probs=137.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhc---CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRS---GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~---~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.|+|++.+++.+...+..... .......|..++||+||||||||++|+++|+.+. +.+|+.++++++...
T Consensus 134 ~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~--~~~~~~v~~~~l~~~---- 207 (444)
T 2zan_A 134 SDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEAN--NSTFFSISSSDLVSK---- 207 (444)
T ss_dssp GGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCC--SSEEEEECCC---------
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcC--CCCEEEEeHHHHHhh----
Confidence 5689999999999988743210 0111123445899999999999999999999873 458899998876542
Q ss_pred cccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeEeecCC
Q psy14504 517 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 583 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 583 (951)
|+|..+. +.++..++...++||||||||.+. ..+++.|+..|+.-. ....+
T Consensus 208 --------~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~--------~~~~~ 271 (444)
T 2zan_A 208 --------WLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVG--------VDNDG 271 (444)
T ss_dssp ------------CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSS--------CCCSS
T ss_pred --------hcchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCcc--------cCCCC
Confidence 4444332 445666677788999999999873 467888888887411 12357
Q ss_pred eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 584 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 584 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
++||+|||.+. .+.|.+++||+.++.+++++.++...|+...+ ...+
T Consensus 272 v~vI~atn~~~------------------------~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l-------~~~~-- 318 (444)
T 2zan_A 272 ILVLGATNIPW------------------------VLDSAIRRRFEKRIYIPLPEAHARAAMFRLHL-------GSTQ-- 318 (444)
T ss_dssp CEEEEEESCGG------------------------GSCHHHHTTCCEEEECCCCCHHHHHHHHHHHH-------TTSC--
T ss_pred EEEEecCCCcc------------------------ccCHHHHhhcceEEEeCCcCHHHHHHHHHHHH-------hcCC--
Confidence 88999999743 35789999999999999999999999965544 2223
Q ss_pred cccchHHHHHHHHhcccccccccccccc
Q psy14504 664 LKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 664 l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
..+++..++.|+.. ...|..+||...
T Consensus 319 ~~l~~~~l~~la~~--t~G~sgadl~~l 344 (444)
T 2zan_A 319 NSLTEADFQELGRK--TDGYSGADISII 344 (444)
T ss_dssp EECCHHHHHHHHHH--TTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHH--cCCCCHHHHHHH
Confidence 45678888999884 344566777765
No 85
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.65 E-value=3.1e-16 Score=169.49 Aligned_cols=161 Identities=16% Similarity=0.175 Sum_probs=102.6
Q ss_pred HHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCcc
Q psy14504 448 AISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIG 527 (951)
Q Consensus 448 ~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g 527 (951)
.++.+...+.+........+.|. .+||+||||||||++|++||+.+ +.+++.++++++... |+|
T Consensus 15 ~~~~~~~~~~k~~l~~~~~~~p~-~lLl~GppGtGKT~la~aiA~~l---~~~~i~v~~~~l~~~------------~~g 78 (293)
T 3t15_A 15 FMDKLVVHITKNFLKLPNIKVPL-ILGIWGGKGQGKSFQCELVFRKM---GINPIMMSAGELESG------------NAG 78 (293)
T ss_dssp HHHHHHHHHHHTTSCCTTCCCCS-EEEEEECTTSCHHHHHHHHHHHH---TCCCEEEEHHHHHCC---------------
T ss_pred HHHHHHHHHHHHHHhcCCCCCCe-EEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeHHHhhhc------------cCc
Confidence 34444444444444444444444 78999999999999999999999 789999999887543 445
Q ss_pred cccc--chhHHHH----HhCCCeEEEEccccccCH-------------HHHHHHHHHhhcceeecCCC--eEeecCCeEE
Q psy14504 528 YEEG--GYLTEIV----RRKPYSLILLDEIEKANS-------------DVFNILLQILDDGRLTDNRG--RTINFRNTII 586 (951)
Q Consensus 528 ~~~~--~~l~~~~----~~~~~~vl~iDEid~~~~-------------~~~~~Ll~~le~g~~~~~~g--~~~~~~~~ii 586 (951)
..+. ..++..+ +...++||||||||++.+ .+++.|+++|+........+ ......+++|
T Consensus 79 ~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~v 158 (293)
T 3t15_A 79 EPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPI 158 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCE
T ss_pred hhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEE
Confidence 4432 1122222 345789999999998765 46799999999654432222 2345678999
Q ss_pred EEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHH
Q psy14504 587 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 587 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
|+|||.... ++++++ +||+.++.+ | +.++..+|++..+
T Consensus 159 I~ttN~~~~------------------------ld~al~R~~R~d~~i~~-P-~~~~r~~Il~~~~ 198 (293)
T 3t15_A 159 IVTGNDFST------------------------LYAPLIRDGRMEKFYWA-P-TREDRIGVCTGIF 198 (293)
T ss_dssp EEECSSCCC--------------------------CHHHHHHHEEEEEEC-C-CHHHHHHHHHHHH
T ss_pred EEecCCccc------------------------CCHHHhCCCCCceeEeC-c-CHHHHHHHHHHhc
Confidence 999997542 456666 599766653 3 9999999977544
No 86
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.65 E-value=1.1e-15 Score=164.65 Aligned_cols=219 Identities=11% Similarity=0.081 Sum_probs=148.4
Q ss_pred hHHHHhcCCCCCccccHHHHHHHHHHHH----cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 34 LTEKARLGKLDPVIGRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 34 l~e~~rp~~l~~lvG~~~~i~~l~~~l~----~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
|.+-|.|..+ +.||+++++.+...+. ...+++++|+||||||||++++.+++.+........+....++.+++.
T Consensus 12 l~~~~~~~~~--L~~Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~ 89 (318)
T 3te6_A 12 IRESLQKREL--LKSQVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDAL 89 (318)
T ss_dssp HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETT
T ss_pred hhhccCCccc--cCCHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEecc
Confidence 3445555432 7799999888876554 577889999999999999999999999864321111124567777764
Q ss_pred hhhc-------------Ccc-ccccHHHHHHHHHHHH-HhcCCCeEEEEecccccccCCCCCCchhHHhhhhhh--ccCC
Q psy14504 110 LLLA-------------GTK-YRGEFEDRLKKILKEI-SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE--LSRG 172 (951)
Q Consensus 110 ~l~~-------------~~~-~~g~~~~~l~~~~~~a-~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~--le~~ 172 (951)
.+.. +.. ..+.....+..+|..+ .....++|++|||+|.|. . +++...|..+ .+..
T Consensus 90 ~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~-----q~~L~~l~~~~~~~~s 162 (318)
T 3te6_A 90 ELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL--S-----EKILQYFEKWISSKNS 162 (318)
T ss_dssp CCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC--C-----THHHHHHHHHHHCSSC
T ss_pred ccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh--c-----chHHHHHHhcccccCC
Confidence 3221 111 1234455677778765 234567899999999996 1 3433223222 2467
Q ss_pred cEEEEEeecchHHHHhhhcCHHHhhcce--EEEeeCCCHHHHHHHHHHHHHhhhhh------------------------
Q psy14504 173 ELHCIGATTLNEYRQYIEKDAAFERRFQ--KILVEEPDIEETISILRGLQKKYEVH------------------------ 226 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~~~l~~Rf~--~i~~~~p~~~er~~il~~~~~~~~~~------------------------ 226 (951)
++.+|+++|..++.. ..+++++++||. .|.|++++.+|...|++.-+......
T Consensus 163 ~~~vI~i~n~~d~~~-~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~ 241 (318)
T 3te6_A 163 KLSIICVGGHNVTIR-EQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQK 241 (318)
T ss_dssp CEEEEEECCSSCCCH-HHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC-------
T ss_pred cEEEEEEecCcccch-hhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhcccccccccccccccccccccccccc
Confidence 899999998764211 235778889995 49999999999999998777654211
Q ss_pred -------cCCCCChHHHHHHHHH---hhhhcccCCCchhHHHHHHHHHHHhH
Q psy14504 227 -------HGVEITDPAIVAASEL---SYRYISDRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 227 -------~~~~i~~~~l~~~~~~---s~~~~~~~~~p~~a~~ll~~a~~~~~ 268 (951)
..+.+++++++.+++. ..|.. +.|++++..|+..+.
T Consensus 242 ~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~------R~Al~ilr~A~~~ae 287 (318)
T 3te6_A 242 IPDNVIVINHKINNKITQLIAKNVANVSGST------EKAFKICEAAVEISK 287 (318)
T ss_dssp -CTTEEEECEECCHHHHHHHHHHHHHHHCSH------HHHHHHHHHHHHHHH
T ss_pred ccccccccccccCHHHHHHHHHHHHhhCChH------HHHHHHHHHHHHHHH
Confidence 0125799999999884 55666 888888888875543
No 87
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.64 E-value=2.2e-15 Score=170.22 Aligned_cols=183 Identities=19% Similarity=0.284 Sum_probs=130.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcC---CCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSG---LSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~---~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.++|++.+++.+...+...... ......+..++||+||||||||++|++||+.+ +.+|+.++++++...
T Consensus 115 ~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~---~~~~~~v~~~~l~~~---- 187 (389)
T 3vfd_A 115 DDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAES---NATFFNISAASLTSK---- 187 (389)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHT---TCEEEEECSCCC-------
T ss_pred HHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhh---cCcEEEeeHHHhhcc----
Confidence 56899999999999888543221 00111233489999999999999999999998 779999999877643
Q ss_pred cccCCCCCCcccccc--chhHHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHhhcceeecCCCeEeecCC
Q psy14504 517 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRTINFRN 583 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 583 (951)
|.|..+. ..++..+....++||||||||.+ ...+++.|+..++...- ....+
T Consensus 188 --------~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-------~~~~~ 252 (389)
T 3vfd_A 188 --------YVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQS-------AGDDR 252 (389)
T ss_dssp ------------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC------------C
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccc-------cCCCC
Confidence 4443332 34455566777899999999988 45678888888884211 12346
Q ss_pred eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 584 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 584 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
++||+|||... .+.+.+++||+.++.|++++.++..+|+...+ ...+
T Consensus 253 v~vI~atn~~~------------------------~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~-------~~~~-- 299 (389)
T 3vfd_A 253 VLVMGATNRPQ------------------------ELDEAVLRRFIKRVYVSLPNEETRLLLLKNLL-------CKQG-- 299 (389)
T ss_dssp EEEEEEESCGG------------------------GCCHHHHTTCCEEEECCCCCHHHHHHHHHHHH-------TTSC--
T ss_pred EEEEEecCCch------------------------hcCHHHHcCcceEEEcCCcCHHHHHHHHHHHH-------HhcC--
Confidence 88999999632 35788999999899999999999999965544 3333
Q ss_pred cccchHHHHHHHHh
Q psy14504 664 LKISKAALKKISNI 677 (951)
Q Consensus 664 l~~~~~~~~~L~~~ 677 (951)
..++++.++.|+..
T Consensus 300 ~~l~~~~~~~la~~ 313 (389)
T 3vfd_A 300 SPLTQKELAQLARM 313 (389)
T ss_dssp CCSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 56778888888874
No 88
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.63 E-value=9.2e-16 Score=174.76 Aligned_cols=187 Identities=16% Similarity=0.276 Sum_probs=127.5
Q ss_pred ccCCChHHHH---HHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAI---SAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~---~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.++||++++ ..+...+..... +++||+||||||||++|++||+.+ +.++..+++....
T Consensus 26 ~~ivGq~~~~~~~~~L~~~i~~~~~---------~~vLL~GppGtGKTtlAr~ia~~~---~~~f~~l~a~~~~------ 87 (447)
T 3pvs_A 26 AQYIGQQHLLAAGKPLPRAIEAGHL---------HSMILWGPPGTGKTTLAEVIARYA---NADVERISAVTSG------ 87 (447)
T ss_dssp TTCCSCHHHHSTTSHHHHHHHHTCC---------CEEEEECSTTSSHHHHHHHHHHHT---TCEEEEEETTTCC------
T ss_pred HHhCCcHHHHhchHHHHHHHHcCCC---------cEEEEECCCCCcHHHHHHHHHHHh---CCCeEEEEeccCC------
Confidence 5689999999 788888875442 379999999999999999999998 5567776653211
Q ss_pred cccCCCCCCccccccchhHHH----HHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCC
Q psy14504 517 RLIGAPPGYIGYEEGGYLTEI----VRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 592 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~~~l~~~----~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 592 (951)
....+.+... .....++||||||||.++...|+.|+..+++| .+++|++|+.
T Consensus 88 -----------~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~~-------------~v~lI~att~ 143 (447)
T 3pvs_A 88 -----------VKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDG-------------TITFIGATTE 143 (447)
T ss_dssp -----------HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHTT-------------SCEEEEEESS
T ss_pred -----------HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhcC-------------ceEEEecCCC
Confidence 1111111111 12356799999999999999999999999974 3557777754
Q ss_pred CchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHH
Q psy14504 593 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 672 (951)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 672 (951)
... ..+.+++++|+ .++.|.+++.+++..++...+......+. ...+.+++++++
T Consensus 144 n~~----------------------~~l~~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~--~~~~~i~~~al~ 198 (447)
T 3pvs_A 144 NPS----------------------FELNSALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYG--GQDIVLPDETRR 198 (447)
T ss_dssp CGG----------------------GSSCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSST--TSSEECCHHHHH
T ss_pred Ccc----------------------cccCHHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhc--cccCcCCHHHHH
Confidence 332 24789999999 58899999999999997777654322111 134789999999
Q ss_pred HHHHhcccccccccccccchHHHHHHH
Q psy14504 673 KISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 673 ~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
+|+.. +...+|.+.+. +++++
T Consensus 199 ~L~~~---~~Gd~R~lln~---Le~a~ 219 (447)
T 3pvs_A 199 AIAEL---VNGDARRALNT---LEMMA 219 (447)
T ss_dssp HHHHH---HCSCHHHHHHH---HHHHH
T ss_pred HHHHH---CCCCHHHHHHH---HHHHH
Confidence 99984 33334444443 66555
No 89
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.63 E-value=2.5e-15 Score=163.36 Aligned_cols=159 Identities=21% Similarity=0.400 Sum_probs=117.9
Q ss_pred ccCCChHHHHHHHHHHHHhh--------hcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRS--------RSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~--------~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
+.++|++.+++.+...+... ..+. .+..++||+||||||||++|+++|..+ +.+++.++++++..
T Consensus 15 ~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~----~~~~~vLL~Gp~GtGKT~la~ala~~~---~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 15 EDIGGLEDVKRELQELVQYPVEHPDKFLKFGM----TPSKGVLFYGPPGCGKTLLAKAIANEC---QANFISIKGPELLT 87 (301)
T ss_dssp GGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCC----CCCSEEEEECSSSSSHHHHHHHHHHHT---TCEEEEECHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCC----CCCceEEEECCCCcCHHHHHHHHHHHh---CCCEEEEEhHHHHh
Confidence 45889999999998888642 1122 122379999999999999999999998 67899999887654
Q ss_pred hhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhcceeecCC
Q psy14504 512 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNR 575 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~--------------~~~~~Ll~~le~g~~~~~~ 575 (951)
. + .|..+. ..++..+....++||||||+|.+.+ .+++.|+..|+.-.
T Consensus 88 ~-----~-------~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~----- 150 (301)
T 3cf0_A 88 M-----W-------FGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMS----- 150 (301)
T ss_dssp H-----H-------HTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSC-----
T ss_pred h-----h-------cCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhccc-----
Confidence 2 2 232222 3445556667789999999998654 35788999998411
Q ss_pred CeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHH
Q psy14504 576 GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 576 g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
...+++||+|||... .+.+.+++ ||+..+.|++++.++..+|++..+
T Consensus 151 ----~~~~v~vi~atn~~~------------------------~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l 199 (301)
T 3cf0_A 151 ----TKKNVFIIGATNRPD------------------------IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANL 199 (301)
T ss_dssp ----TTSSEEEEEEESCGG------------------------GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred ----CCCCEEEEEecCCcc------------------------ccChHHhcCCccceEEecCCcCHHHHHHHHHHHH
Confidence 235788999999743 24567776 999999999999999999865544
No 90
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.63 E-value=4.2e-15 Score=163.77 Aligned_cols=189 Identities=13% Similarity=0.159 Sum_probs=142.3
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.++|++++++.+..++.... ..+.+|++||||||||++|+++|+.+ +.+++.++++.... ..+.
T Consensus 26 ~~ivg~~~~~~~l~~~l~~~~--------~~~~~L~~G~~G~GKT~la~~la~~l---~~~~~~i~~~~~~~-~~i~--- 90 (324)
T 3u61_B 26 DECILPAFDKETFKSITSKGK--------IPHIILHSPSPGTGKTTVAKALCHDV---NADMMFVNGSDCKI-DFVR--- 90 (324)
T ss_dssp TTSCCCHHHHHHHHHHHHTTC--------CCSEEEECSSTTSSHHHHHHHHHHHT---TEEEEEEETTTCCH-HHHH---
T ss_pred HHHhCcHHHHHHHHHHHHcCC--------CCeEEEeeCcCCCCHHHHHHHHHHHh---CCCEEEEcccccCH-HHHH---
Confidence 568899999999999887332 12357889999999999999999998 56788888765321 1110
Q ss_pred CCCCCCccccccchhHHHHHh----CCCeEEEEccccccC-HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCc
Q psy14504 520 GAPPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKAN-SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGS 594 (951)
Q Consensus 520 g~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~-~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~ 594 (951)
..+...... ..++||||||+|.++ ++.++.|++.+++ ...++.||+|||...
T Consensus 91 ------------~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~-----------~~~~~~iI~~~n~~~ 147 (324)
T 3u61_B 91 ------------GPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEA-----------YSSNCSIIITANNID 147 (324)
T ss_dssp ------------THHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHH-----------HGGGCEEEEEESSGG
T ss_pred ------------HHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHh-----------CCCCcEEEEEeCCcc
Confidence 112222222 256899999999999 9999999999996 345678999999633
Q ss_pred hhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccch-HHHHH
Q psy14504 595 DKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISK-AALKK 673 (951)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~-~~~~~ 673 (951)
.+.+++.+|| .++.|++++.+++.+|+...+..+...+...+ +.+++ +++++
T Consensus 148 ------------------------~l~~~l~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~--~~~~~~~~~~~ 200 (324)
T 3u61_B 148 ------------------------GIIKPLQSRC-RVITFGQPTDEDKIEMMKQMIRRLTEICKHEG--IAIADMKVVAA 200 (324)
T ss_dssp ------------------------GSCTTHHHHS-EEEECCCCCHHHHHHHHHHHHHHHHHHHHHHT--CCBSCHHHHHH
T ss_pred ------------------------ccCHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcC--CCCCcHHHHHH
Confidence 3678999999 58999999999999999998888888777777 67778 99999
Q ss_pred HHHhcccccccccccccchHHHHHHH
Q psy14504 674 ISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 674 L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
|+... -||+......++++.
T Consensus 201 l~~~~------~gd~R~a~~~L~~~~ 220 (324)
T 3u61_B 201 LVKKN------FPDFRKTIGELDSYS 220 (324)
T ss_dssp HHHHT------CSCTTHHHHHHHHHG
T ss_pred HHHhC------CCCHHHHHHHHHHHh
Confidence 98842 245555544455443
No 91
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.62 E-value=4.8e-15 Score=165.03 Aligned_cols=195 Identities=16% Similarity=0.226 Sum_probs=136.8
Q ss_pred ccCCChHHHHHHHHHHHHhhhcC---CCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSG---LSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~---~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.++|++.+++.+...+...... ......+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 84 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~---~~~~~~i~~~~l~~~---- 156 (357)
T 3d8b_A 84 EDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQS---GATFFSISASSLTSK---- 156 (357)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHT---TCEEEEEEGGGGCCS----
T ss_pred HHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHc---CCeEEEEehHHhhcc----
Confidence 56899999999999888642110 00011233479999999999999999999998 678999999876542
Q ss_pred cccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeEeecCC
Q psy14504 517 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 583 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 583 (951)
+.|..+. +.++..+....++||||||||.+. ..+++.|+..++..... ...+
T Consensus 157 --------~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~~-------~~~~ 221 (357)
T 3d8b_A 157 --------WVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTS-------SEDR 221 (357)
T ss_dssp --------STTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-----------CCCC
T ss_pred --------ccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhccccc-------CCCC
Confidence 3343222 344555566778999999998873 35678888888852211 2346
Q ss_pred eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 584 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 584 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
++||+|||... .+.+.+++||+..+.+++++.++..+++...+. ..+
T Consensus 222 v~vI~atn~~~------------------------~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~-------~~~-- 268 (357)
T 3d8b_A 222 ILVVGATNRPQ------------------------EIDEAARRRLVKRLYIPLPEASARKQIVINLMS-------KEQ-- 268 (357)
T ss_dssp EEEEEEESCGG------------------------GBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHH-------TSC--
T ss_pred EEEEEecCChh------------------------hCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHh-------hcC--
Confidence 78999998632 356889999998999999999999999655443 233
Q ss_pred cccchHHHHHHHHhcccccccccccccc
Q psy14504 664 LKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 664 l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
+.++++.++.|+... ..|.-+|+...
T Consensus 269 ~~l~~~~l~~la~~t--~G~s~~dl~~l 294 (357)
T 3d8b_A 269 CCLSEEEIEQIVQQS--DAFSGADMTQL 294 (357)
T ss_dssp BCCCHHHHHHHHHHT--TTCCHHHHHHH
T ss_pred CCccHHHHHHHHHHc--CCCCHHHHHHH
Confidence 557788888888743 33344555543
No 92
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.62 E-value=6.1e-15 Score=162.50 Aligned_cols=179 Identities=13% Similarity=0.227 Sum_probs=134.3
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.++|++.++..+...+....... .+..+++|+||||||||++|+++++.+ +.+++.++++.+...
T Consensus 12 ~~~ig~~~~~~~l~~~l~~~~~~~----~~~~~vll~G~~GtGKT~la~~i~~~~---~~~~~~~~~~~~~~~------- 77 (324)
T 1hqc_A 12 DEYIGQERLKQKLRVYLEAAKARK----EPLEHLLLFGPPGLGKTTLAHVIAHEL---GVNLRVTSGPAIEKP------- 77 (324)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHC----SCCCCCEEECCTTCCCHHHHHHHHHHH---TCCEEEECTTTCCSH-------
T ss_pred HHhhCHHHHHHHHHHHHHHHHccC----CCCCcEEEECCCCCCHHHHHHHHHHHh---CCCEEEEeccccCCh-------
Confidence 568899999999988887543211 122369999999999999999999988 567888887655322
Q ss_pred CCCCCCccccccchhHHHHHh--CCCeEEEEccccccCHHHHHHHHHHhhcceeecCC-------CeEeecCCeEEEEec
Q psy14504 520 GAPPGYIGYEEGGYLTEIVRR--KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNR-------GRTINFRNTIIVMTS 590 (951)
Q Consensus 520 g~~~~~~g~~~~~~l~~~~~~--~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~-------g~~~~~~~~iiI~tt 590 (951)
+.+...+.. +.+++|||||++.+++..++.|+..++++.+.... .......++++|++|
T Consensus 78 ------------~~l~~~l~~~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t 145 (324)
T 1hqc_A 78 ------------GDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGAT 145 (324)
T ss_dssp ------------HHHHHHHTTTCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEE
T ss_pred ------------HHHHHHHHHhccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeC
Confidence 223344433 56789999999999999999999999987654211 122234578899999
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 670 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 670 (951)
|... .|.++|++||+.++.|++++.+++.+++...+ ...+ +.+++++
T Consensus 146 ~~~~------------------------~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~-------~~~~--~~~~~~~ 192 (324)
T 1hqc_A 146 TRPG------------------------LITAPLLSRFGIVEHLEYYTPEELAQGVMRDA-------RLLG--VRITEEA 192 (324)
T ss_dssp SCCS------------------------SCSCSTTTTCSCEEECCCCCHHHHHHHHHHHH-------HTTT--CCCCHHH
T ss_pred CCcc------------------------cCCHHHHhcccEEEecCCCCHHHHHHHHHHHH-------HhcC--CCCCHHH
Confidence 9642 36788999998899999999999988855544 2233 5689999
Q ss_pred HHHHHHh
Q psy14504 671 LKKISNI 677 (951)
Q Consensus 671 ~~~L~~~ 677 (951)
++.|+..
T Consensus 193 ~~~l~~~ 199 (324)
T 1hqc_A 193 ALEIGRR 199 (324)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999884
No 93
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.62 E-value=8.5e-15 Score=159.21 Aligned_cols=195 Identities=18% Similarity=0.272 Sum_probs=134.1
Q ss_pred ccCCChHHHHHHHHHHHHhhhcC---CCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSG---LSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~---~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.++|++.+++.+...+...... ......+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 21 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~---~~~~~~i~~~~l~~~---- 93 (297)
T 3b9p_A 21 TDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATEC---SATFLNISAASLTSK---- 93 (297)
T ss_dssp GGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHT---TCEEEEEESTTTSSS----
T ss_pred HHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHh---CCCeEEeeHHHHhhc----
Confidence 56889999999999887543210 00011233479999999999999999999998 668888888776432
Q ss_pred cccCCCCCCccccc--cchhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeEeecCC
Q psy14504 517 RLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRTINFRN 583 (951)
Q Consensus 517 ~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 583 (951)
+.|... .+.++..+....++||||||+|.+. ...++.|+..++..... ....+
T Consensus 94 --------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~------~~~~~ 159 (297)
T 3b9p_A 94 --------YVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGN------PDGDR 159 (297)
T ss_dssp --------SCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------------C
T ss_pred --------ccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhccccc------CCCCc
Confidence 333222 1344555666778999999998873 56778888888852111 01245
Q ss_pred eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 584 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 584 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
++||++||... .+.+.+++||+..+.+++++.++...|+...+ ...+
T Consensus 160 v~vi~~tn~~~------------------------~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~-------~~~~-- 206 (297)
T 3b9p_A 160 IVVLAATNRPQ------------------------ELDEAALRRFTKRVYVSLPDEQTRELLLNRLL-------QKQG-- 206 (297)
T ss_dssp EEEEEEESCGG------------------------GBCHHHHHHCCEEEECCCCCHHHHHHHHHHHH-------GGGS--
T ss_pred EEEEeecCChh------------------------hCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHH-------HhcC--
Confidence 78899999643 35788999999999999999999988865544 2333
Q ss_pred cccchHHHHHHHHhccccccccccccc
Q psy14504 664 LKISKAALKKISNIGFDLIYGARDVHG 690 (951)
Q Consensus 664 l~~~~~~~~~L~~~~~~~~~g~~dlhg 690 (951)
..+++++++.|+... ..|..+|+..
T Consensus 207 ~~~~~~~~~~la~~~--~g~~~~~l~~ 231 (297)
T 3b9p_A 207 SPLDTEALRRLAKIT--DGYSGSDLTA 231 (297)
T ss_dssp CCSCHHHHHHHHHHT--TTCCHHHHHH
T ss_pred CCCCHHHHHHHHHHc--CCCCHHHHHH
Confidence 457788888888742 3333345544
No 94
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.61 E-value=5.9e-15 Score=169.32 Aligned_cols=206 Identities=16% Similarity=0.194 Sum_probs=139.1
Q ss_pred HHHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 429 EKLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 429 ~~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
..+..+.+.+...++|++++++.+..++.... ++||+||||||||++|++||+.+. .+.+|....+.-
T Consensus 11 ~~~~~l~~~l~~~ivGq~~~i~~l~~al~~~~-----------~VLL~GpPGtGKT~LAraLa~~l~-~~~~f~~~~~~~ 78 (500)
T 3nbx_X 11 ERISRLSSSLEKGLYERSHAIRLCLLAALSGE-----------SVFLLGPPGIAKSLIARRLKFAFQ-NARAFEYLMTRF 78 (500)
T ss_dssp HHHHHHHHHHHTTCSSCHHHHHHHHHHHHHTC-----------EEEEECCSSSSHHHHHHHGGGGBS-SCCEEEEECCTT
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCC-----------eeEeecCchHHHHHHHHHHHHHHh-hhhHHHHHHHhc
Confidence 45667888899999999999998888776432 799999999999999999999873 234555555542
Q ss_pred ccchhchhcccCCCCCCccccccchhHHHHHh--CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEE
Q psy14504 509 FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRR--KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTII 586 (951)
Q Consensus 509 ~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~--~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ii 586 (951)
.. ...++|...++.... .+.+...... ..++|||||||+++++.+++.|++.|+++.++. .|........++
T Consensus 79 -~t---~~dL~G~~~~~~~~~-~g~~~~~~~g~l~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i-~G~~~~~~~~~i 152 (500)
T 3nbx_X 79 -ST---PEEVFGPLSIQALKD-EGRYERLTSGYLPEAEIVFLDEIWKAGPAILNTLLTAINERQFRN-GAHVEKIPMRLL 152 (500)
T ss_dssp -CC---HHHHHCCBC-----------CBCCTTSGGGCSEEEEESGGGCCHHHHHHHHHHHHSSEEEC-SSSEEECCCCEE
T ss_pred -CC---HHHhcCcccHHHHhh-chhHHhhhccCCCcceeeeHHhHhhhcHHHHHHHHHHHHHHhccC-CCCcCCcchhhh
Confidence 11 245555422211100 1111101011 125799999999999999999999999998886 455555555567
Q ss_pred EEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCCh-hhHHHHHHHHH---------------
Q psy14504 587 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNR-KNILSIANIQL--------------- 650 (951)
Q Consensus 587 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~-~~~~~i~~~~l--------------- 650 (951)
|+|||..++ ...+.+++++||...+.+++++. ++..+|+....
T Consensus 153 I~ATN~lpe---------------------~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~ 211 (500)
T 3nbx_X 153 VAASNELPE---------------------ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTD 211 (500)
T ss_dssp EEEESSCCC---------------------TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCH
T ss_pred hhccccCCC---------------------ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecH
Confidence 888885332 12466899999988899999987 66777765432
Q ss_pred ---HHHHHHHHhcCCccccchHHHHHHHHh
Q psy14504 651 ---NILKNKLLKMNMDLKISKAALKKISNI 677 (951)
Q Consensus 651 ---~~~~~~~~~~~~~l~~~~~~~~~L~~~ 677 (951)
..+.... ..+.+++++++++++.
T Consensus 212 e~l~~~~~~~----~~v~v~d~v~e~i~~l 237 (500)
T 3nbx_X 212 EEYERWQKEI----GEITLPDHVFELIFML 237 (500)
T ss_dssp HHHHHHHHHH----TTCBCCHHHHHHHHHH
T ss_pred HHHHHHHhcC----CcccCchHHHHHHHHH
Confidence 1111111 1367888888888764
No 95
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.61 E-value=3.5e-17 Score=200.25 Aligned_cols=201 Identities=20% Similarity=0.309 Sum_probs=149.7
Q ss_pred cCCCCCccccHHHHHHHHHHHHc-------------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 40 LGKLDPVIGRDDEIRRAIQVLQR-------------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 40 p~~l~~lvG~~~~i~~l~~~l~~-------------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
..++++++|.+...+.+...+.. ....++||+||||||||++|+++|..+ +.+++.+
T Consensus 473 ~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~----------~~~~i~v 542 (806)
T 1ypw_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANEC----------QANFISI 542 (806)
T ss_dssp CCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHH----------TCCCCCC
T ss_pred cccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHh----------CCCEEEE
Confidence 34678999999998888876542 345679999999999999999999998 6677777
Q ss_pred ehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCC------chhHHhhhhhhcc----CCcEEE
Q psy14504 107 DIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEG------SIDAGNMLKPELS----RGELHC 176 (951)
Q Consensus 107 ~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~------~~~~~~~L~~~le----~~~i~v 176 (951)
+++.+. .+|.|+.+..++.+|+.+... .|+||||||+|.+.+.+.... ...+.+.|+..|+ ...++|
T Consensus 543 ~~~~l~--~~~~g~~~~~i~~~f~~a~~~-~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~v 619 (806)
T 1ypw_A 543 KGPELL--TMWFGESEANVREIFDKARQA-APCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFI 619 (806)
T ss_dssp CCSSST--TCCTTTSSHHHHHHHHHHHHH-CSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBC
T ss_pred echHhh--hhhcCccHHHHHHHHHHHHhc-CCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEE
Confidence 777766 668899999999999999854 488999999999987664321 1234456666664 457899
Q ss_pred EEeecchHHHHhhhcCHHHhh--cceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCc
Q psy14504 177 IGATTLNEYRQYIEKDAAFER--RFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMP 253 (951)
Q Consensus 177 I~at~~~~~~~~~~~~~~l~~--Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p 253 (951)
|+|||.++ .+|++++| ||+. |+|+.|+.++|..||+..++.......+.+ ..++..+.+| .+
T Consensus 620 I~tTN~~~-----~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~~~~~l-----~~la~~t~g~-----sg 684 (806)
T 1ypw_A 620 IGATNRPD-----IIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDL-----EFLAKMTNGF-----SG 684 (806)
T ss_dssp CCCCBSCG-----GGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC----CCCC-----SCSCGGGSSS-----CC
T ss_pred EEecCCcc-----cCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCCcccCH-----HHHHHhcccc-----CH
Confidence 99999998 79999999 9985 999999999999999887765433333322 2333444443 46
Q ss_pred hhHHHHHHHHHHHhH
Q psy14504 254 DKAIDLIDEAAAKIK 268 (951)
Q Consensus 254 ~~a~~ll~~a~~~~~ 268 (951)
.++..++..|+..+.
T Consensus 685 adi~~l~~~a~~~a~ 699 (806)
T 1ypw_A 685 ADLTEICQRACKLAI 699 (806)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 777777777765543
No 96
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.60 E-value=1.9e-14 Score=153.40 Aligned_cols=165 Identities=21% Similarity=0.272 Sum_probs=109.8
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLS---DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~---~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.++|++.+++.+...+........ ....+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 6 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~~~~~~~~~~---- 78 (262)
T 2qz4_A 6 KDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEA---QVPFLAMAGAEFVEV---- 78 (262)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHH---TCCEEEEETTTTSSS----
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHh---CCCEEEechHHHHhh----
Confidence 5689999999999887765432111 011223479999999999999999999998 678999998876532
Q ss_pred cccCCCCCCccccc--cchhHHHHHhCCCeEEEEccccccC------------HHH---HHHHHHHhhcceeecCCCeEe
Q psy14504 517 RLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN------------SDV---FNILLQILDDGRLTDNRGRTI 579 (951)
Q Consensus 517 ~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~iDEid~~~------------~~~---~~~Ll~~le~g~~~~~~g~~~ 579 (951)
+.|... ...++..+....++||||||+|.+. ... ++.|+..++.. .
T Consensus 79 --------~~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~---------~ 141 (262)
T 2qz4_A 79 --------IGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGM---------G 141 (262)
T ss_dssp --------STTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTC---------C
T ss_pred --------ccChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCc---------C
Confidence 222211 1234444555668999999999983 223 34455555431 0
Q ss_pred ecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHH
Q psy14504 580 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNI 652 (951)
Q Consensus 580 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~ 652 (951)
...++++|+|||... .+.+.+++ ||+..+.|++++.++..+|++..+..
T Consensus 142 ~~~~~~vi~~tn~~~------------------------~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~ 192 (262)
T 2qz4_A 142 TTDHVIVLASTNRAD------------------------ILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKS 192 (262)
T ss_dssp TTCCEEEEEEESCGG------------------------GGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCChh------------------------hcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHh
Confidence 234678999998643 23566776 99999999999999999997766644
No 97
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.60 E-value=1.3e-14 Score=160.40 Aligned_cols=205 Identities=21% Similarity=0.267 Sum_probs=137.1
Q ss_pred HHHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14504 430 KLLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 509 (951)
Q Consensus 430 ~l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 509 (951)
.+..+...+...++||+.+++.+..++... .++||+||||||||++|+++|+.+ +.++..+++...
T Consensus 17 ~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~-----------~~vll~G~pGtGKT~la~~la~~~---~~~~~~i~~~~~ 82 (331)
T 2r44_A 17 KIKEVIDEVGKVVVGQKYMINRLLIGICTG-----------GHILLEGVPGLAKTLSVNTLAKTM---DLDFHRIQFTPD 82 (331)
T ss_dssp HHHHHHHHHTTTCCSCHHHHHHHHHHHHHT-----------CCEEEESCCCHHHHHHHHHHHHHT---TCCEEEEECCTT
T ss_pred HHHHHHHHhccceeCcHHHHHHHHHHHHcC-----------CeEEEECCCCCcHHHHHHHHHHHh---CCCeEEEecCCC
Confidence 355677788899999999999998887642 269999999999999999999988 557777776422
Q ss_pred cchhchhcccCCCCCCccccccchhHHHHHhC--CCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeec-CCeEE
Q psy14504 510 IEKHSISRLIGAPPGYIGYEEGGYLTEIVRRK--PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINF-RNTII 586 (951)
Q Consensus 510 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~--~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~-~~~ii 586 (951)
.... .++|... + +...+ .. ..... ..+||||||++.+++.+++.|++.|+++.+... |..... .++++
T Consensus 83 ~~~~---~l~g~~~-~-~~~~~-~~--~~~~g~l~~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~-g~~~~~~~~~~v 153 (331)
T 2r44_A 83 LLPS---DLIGTMI-Y-NQHKG-NF--EVKKGPVFSNFILADEVNRSPAKVQSALLECMQEKQVTIG-DTTYPLDNPFLV 153 (331)
T ss_dssp CCHH---HHHEEEE-E-ETTTT-EE--EEEECTTCSSEEEEETGGGSCHHHHHHHHHHHHHSEEEET-TEEEECCSSCEE
T ss_pred CChh---hcCCcee-e-cCCCC-ce--EeccCcccccEEEEEccccCCHHHHHHHHHHHhcCceeeC-CEEEECCCCEEE
Confidence 2111 1111100 0 00000 00 00000 137999999999999999999999999887763 444443 45677
Q ss_pred EEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHH-------------
Q psy14504 587 VMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNIL------------- 653 (951)
Q Consensus 587 I~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~------------- 653 (951)
|+|+|..... . ...+++++++||+..+.+.+++.++..+|+...+...
T Consensus 154 iat~np~~~~--~-----------------~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~ 214 (331)
T 2r44_A 154 LATQNPVEQE--G-----------------TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKND 214 (331)
T ss_dssp EEEECTTCCS--C-----------------CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHH
T ss_pred EEecCCCccc--C-----------------cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHH
Confidence 7777742210 0 1137899999998789999999999999987664321
Q ss_pred HHHHHhcCCccccchHHHHHHHH
Q psy14504 654 KNKLLKMNMDLKISKAALKKISN 676 (951)
Q Consensus 654 ~~~~~~~~~~l~~~~~~~~~L~~ 676 (951)
-..+......+.+++++++++++
T Consensus 215 i~~~~~~~~~v~~~~~~~~~i~~ 237 (331)
T 2r44_A 215 VLEIRNEINKVTISESLEKYIIE 237 (331)
T ss_dssp HHHHHHHHHTCBCCHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHH
Confidence 00000101136678888888876
No 98
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.59 E-value=1.2e-14 Score=155.91 Aligned_cols=195 Identities=17% Similarity=0.142 Sum_probs=128.9
Q ss_pred CCCccccHHHHHHHHH-------HHH---cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh
Q psy14504 43 LDPVIGRDDEIRRAIQ-------VLQ---RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL 112 (951)
Q Consensus 43 l~~lvG~~~~i~~l~~-------~l~---~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~ 112 (951)
...++|+++.++.++. .+. ...+.++||+||||||||++|+++|+.+ +.+++.+++.+..
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~----------~~~~~~i~~~~~~ 101 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEES----------NFPFIKICSPDKM 101 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHH----------TCSEEEEECGGGC
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHh----------CCCEEEEeCHHHh
Confidence 3468898877666655 333 4556789999999999999999999987 7788888776543
Q ss_pred cCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCC--CchhHHhhhhhhcc-----CCcEEEEEeecchHH
Q psy14504 113 AGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVE--GSIDAGNMLKPELS-----RGELHCIGATTLNEY 185 (951)
Q Consensus 113 ~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~--~~~~~~~~L~~~le-----~~~i~vI~at~~~~~ 185 (951)
.+. ..+.....++.+|..+. ...+.||||||+|.|++..... ......+.|...++ ...+++|+|||.++
T Consensus 102 ~g~-~~~~~~~~~~~~~~~~~-~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~- 178 (272)
T 1d2n_A 102 IGF-SETAKCQAMKKIFDDAY-KSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKD- 178 (272)
T ss_dssp TTC-CHHHHHHHHHHHHHHHH-TSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHH-
T ss_pred cCC-chHHHHHHHHHHHHHHH-hcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChh-
Confidence 222 12333456778888776 3457899999999997543211 12345566666664 23678999999887
Q ss_pred HHhhhcCH-HHhhcceE-EEeeCCCH-HHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHH
Q psy14504 186 RQYIEKDA-AFERRFQK-ILVEEPDI-EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDE 262 (951)
Q Consensus 186 ~~~~~~~~-~l~~Rf~~-i~~~~p~~-~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~ 262 (951)
.+++ .+.+||.. +.+++++. ++...++. .. ..++++++..++..+.+|.-.. -.+.+.++++.
T Consensus 179 ----~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~---~~------~~~~~~~~~~l~~~~~g~~~~g-~ir~l~~~l~~ 244 (272)
T 1d2n_A 179 ----VLQEMEMLNAFSTTIHVPNIATGEQLLEALE---LL------GNFKDKERTTIAQQVKGKKVWI-GIKKLLMLIEM 244 (272)
T ss_dssp ----HHHHTTCTTTSSEEEECCCEEEHHHHHHHHH---HH------TCSCHHHHHHHHHHHTTSEEEE-CHHHHHHHHHH
T ss_pred ----hcchhhhhcccceEEcCCCccHHHHHHHHHH---hc------CCCCHHHHHHHHHHhcCCCccc-cHHHHHHHHHH
Confidence 4555 67889975 77766654 33333333 21 2468899999999887753110 12445555555
Q ss_pred HH
Q psy14504 263 AA 264 (951)
Q Consensus 263 a~ 264 (951)
+.
T Consensus 245 a~ 246 (272)
T 1d2n_A 245 SL 246 (272)
T ss_dssp HT
T ss_pred Hh
Confidence 43
No 99
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.59 E-value=1.2e-14 Score=152.66 Aligned_cols=199 Identities=11% Similarity=0.063 Sum_probs=140.5
Q ss_pred chHHHHhc-CCCCCcccc---HHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 33 DLTEKARL-GKLDPVIGR---DDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 33 ~l~e~~rp-~~l~~lvG~---~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
+|..+++| .+|++++|. ...++.+..++......+++|+||||||||++|+++++.+... +..++.+++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~~~~-------~~~~~~~~~ 88 (242)
T 3bos_A 16 SLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANEL-------ERRSFYIPL 88 (242)
T ss_dssp EEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEG
T ss_pred CCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEEEEEH
Confidence 46677777 799999973 4677777777776677899999999999999999999988543 456777777
Q ss_pred hhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhh----ccCCcEEEEEeecchH
Q psy14504 109 ALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPE----LSRGELHCIGATTLNE 184 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~----le~~~i~vI~at~~~~ 184 (951)
..+.... ...+..+ ..+.+|||||++.+.... ...+.|..+ .+.+.+.+|++|+...
T Consensus 89 ~~~~~~~----------~~~~~~~---~~~~vliiDe~~~~~~~~------~~~~~l~~~l~~~~~~~~~~ii~~~~~~~ 149 (242)
T 3bos_A 89 GIHASIS----------TALLEGL---EQFDLICIDDVDAVAGHP------LWEEAIFDLYNRVAEQKRGSLIVSASASP 149 (242)
T ss_dssp GGGGGSC----------GGGGTTG---GGSSEEEEETGGGGTTCH------HHHHHHHHHHHHHHHHCSCEEEEEESSCT
T ss_pred HHHHHHH----------HHHHHhc---cCCCEEEEeccccccCCH------HHHHHHHHHHHHHHHcCCCeEEEEcCCCH
Confidence 6654211 1111111 235699999999985421 123334443 3455554555555332
Q ss_pred HHHhhhcCHHHhhcc---eEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHH
Q psy14504 185 YRQYIEKDAAFERRF---QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLID 261 (951)
Q Consensus 185 ~~~~~~~~~~l~~Rf---~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~ 261 (951)
.......+.+.+|| ..+.|++|+.+++.++++..+.. .++.++++++..++..+.+.+ +.+..+++
T Consensus 150 -~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~----~~~~~~~~~~~~l~~~~~g~~------r~l~~~l~ 218 (242)
T 3bos_A 150 -MEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAM----RGLQLPEDVGRFLLNRMARDL------RTLFDVLD 218 (242)
T ss_dssp -TTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHH----TTCCCCHHHHHHHHHHTTTCH------HHHHHHHH
T ss_pred -HHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHccCCH------HHHHHHHH
Confidence 01223468999999 56999999999999999988764 467899999999998887655 78888888
Q ss_pred HHHHHhH
Q psy14504 262 EAAAKIK 268 (951)
Q Consensus 262 ~a~~~~~ 268 (951)
.++..+.
T Consensus 219 ~~~~~a~ 225 (242)
T 3bos_A 219 RLDKASM 225 (242)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8776553
No 100
>1aui_A Calcineurin, serine/threonine phosphatase 2B; hydrolase, immunosuppression; 2.10A {Homo sapiens} SCOP: d.159.1.3
Probab=99.58 E-value=2.7e-15 Score=167.40 Aligned_cols=120 Identities=18% Similarity=0.317 Sum_probs=94.8
Q ss_pred cccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcC----CccEEEcCCChHHHHHHHhh
Q psy14504 680 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMR----NYAKIVLGNHEIHLLDVLIN 755 (951)
Q Consensus 680 ~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~----~~~~~v~GNHe~~~l~~~~~ 755 (951)
.+.+.+|||||++.+|.++++..+ .++.+.++|+||++|||+.+.+|++++++++ +++++|+||||.+++..+.+
T Consensus 83 ~pI~VIGDIHGq~~dL~~LL~~~g-~p~~d~yVFLGDyVDRGp~S~Evl~lL~aLk~~~P~~v~lLRGNHE~~~l~~~yg 161 (521)
T 1aui_A 83 APVTVCGDIHGQFFDLMKLFEVGG-SPANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFT 161 (521)
T ss_dssp SSEEEECCCTTCHHHHHHHHHHHC-CTTTCCEEECSCCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHSS
T ss_pred cceeeccCCCCCHHHHHHHHHhcC-CCCcceEEEcCCcCCCCCCHHHHHHHHHHHhhhCCCeEEEecCCccHHHHHHHhC
Confidence 357889999999999999998544 5678999999999999999999999998873 57899999999998865432
Q ss_pred cccCCccccHHHhhCCCCHHHHHHHHhcCCceE-EeCCEEEEecccCcCCC
Q psy14504 756 INKKSKLDTFDDILDAPDKKKLVSWLRTQPLAI-YYKKYLMIHAGVAKQWT 805 (951)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~-~~~~~~~vHAG~~p~~~ 805 (951)
.. .+....+ .....+.+.+|++.||++. ..+++++||||+.|.|.
T Consensus 162 F~----~E~~~ky-~~~l~~~~~~~f~~LPlaaii~~~il~VHGGlsP~~~ 207 (521)
T 1aui_A 162 FK----QECKIKY-SERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIN 207 (521)
T ss_dssp HH----HHHHHHS-CHHHHHHHHHHHTTSCCEEEETTTEEEESSCCCTTCC
T ss_pred cc----HHHHHhh-hhHHHHHHHHHHHhCCceEEecCCceEECCCcCcccC
Confidence 11 0111111 1223467899999999984 56789999999999885
No 101
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.58 E-value=6.4e-15 Score=172.60 Aligned_cols=197 Identities=17% Similarity=0.212 Sum_probs=126.4
Q ss_pred CccccHHHHHHHHHHHH------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC----
Q psy14504 45 PVIGRDDEIRRAIQVLQ------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG---- 114 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~---- 114 (951)
+++|.+...+.+...+. .....+++|+|||||||||+|+++|..+ +.++..++++.....
T Consensus 82 di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l----------~~~~~~i~~~~~~~~~~~~ 151 (543)
T 3m6a_A 82 EHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSL----------GRKFVRISLGGVRDESEIR 151 (543)
T ss_dssp HCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHH----------TCEEEEECCCC--------
T ss_pred HhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEEEecccchhhhhh
Confidence 47899988777755432 1234578999999999999999999998 667777776543211
Q ss_pred ---ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC-----------------CcE
Q psy14504 115 ---TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR-----------------GEL 174 (951)
Q Consensus 115 ---~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~-----------------~~i 174 (951)
..+.|.....+...|..+.. . ..||||||+|.+.+... .+.++.|+..++. ..+
T Consensus 152 g~~~~~ig~~~~~~~~~~~~a~~-~-~~vl~lDEid~l~~~~~----~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v 225 (543)
T 3m6a_A 152 GHRRTYVGAMPGRIIQGMKKAGK-L-NPVFLLDEIDKMSSDFR----GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKV 225 (543)
T ss_dssp ------------CHHHHHHTTCS-S-SEEEEEEESSSCC-------------CCGGGTCTTTTTBCCCSSSCCCCBCSSC
T ss_pred hHHHHHhccCchHHHHHHHHhhc-c-CCEEEEhhhhhhhhhhc----cCHHHHHHHHHhhhhcceeecccCCeeecccce
Confidence 13455555556666666542 2 33999999999976431 1244556666642 457
Q ss_pred EEEEeecchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHHH-Hhhhhh-----cCCCCChHHHHHHHHHhhhhcc
Q psy14504 175 HCIGATTLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGLQ-KKYEVH-----HGVEITDPAIVAASELSYRYIS 248 (951)
Q Consensus 175 ~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~-~~~~~~-----~~~~i~~~~l~~~~~~s~~~~~ 248 (951)
++|+|||... .++++|++||..|.|+.|+.+++..|++..+ .++... ..+.++++++..++....+.
T Consensus 226 ~iI~ttN~~~-----~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~-- 298 (543)
T 3m6a_A 226 LFIATANNLA-----TIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTRE-- 298 (543)
T ss_dssp EEEEECSSTT-----TSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCC--
T ss_pred EEEeccCccc-----cCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChh--
Confidence 8999999987 8999999999889999999999999997654 222212 24567899988877643321
Q ss_pred cCCCchhHHHHHHHHHHH
Q psy14504 249 DRFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 249 ~~~~p~~a~~ll~~a~~~ 266 (951)
.-.+...+.++.++..
T Consensus 299 --~~vR~L~~~i~~~~~~ 314 (543)
T 3m6a_A 299 --AGVRSLERQLAAICRK 314 (543)
T ss_dssp --SSSHHHHHHHHHHHHH
T ss_pred --hchhHHHHHHHHHHHH
Confidence 2234445555555543
No 102
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.58 E-value=1e-14 Score=164.92 Aligned_cols=214 Identities=18% Similarity=0.196 Sum_probs=144.1
Q ss_pred CCccccHHHHHHHHHHHHc----CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc------
Q psy14504 44 DPVIGRDDEIRRAIQVLQR----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA------ 113 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~~----~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~------ 113 (951)
++++|++++++.+...+.. ....+++|+||||||||++|+++++.+..... ....+..++.+++.....
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~ 97 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARAS-SLGVLVKPIYVNARHRETPYRVAS 97 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHH-HHTCCEEEEEEETTTSCSHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHh-ccCCCeEEEEEECCcCCCHHHHHH
Confidence 7899999999999987743 56678999999999999999999998743100 000145677777643210
Q ss_pred ------C--cccccc-HHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc----CCcEEEEEee
Q psy14504 114 ------G--TKYRGE-FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS----RGELHCIGAT 180 (951)
Q Consensus 114 ------~--~~~~g~-~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le----~~~i~vI~at 180 (951)
+ ....|. ....+..++..+...+.++||||||+|.+.... ..++....+...++ ...+.+|++|
T Consensus 98 ~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~~~~l~~l~~~~~~~~~~~~~~~I~~t 174 (387)
T 2v1u_A 98 AIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GGQDLLYRITRINQELGDRVWVSLVGIT 174 (387)
T ss_dssp HHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---THHHHHHHHHHGGGCC-----CEEEEEC
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CCChHHHhHhhchhhcCCCceEEEEEEE
Confidence 0 001122 222344555555444558899999999996531 11333333444444 5678999999
Q ss_pred cchHHHHhhhcCHHHhhcc--eEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHH
Q psy14504 181 TLNEYRQYIEKDAAFERRF--QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAID 258 (951)
Q Consensus 181 ~~~~~~~~~~~~~~l~~Rf--~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ 258 (951)
|..++. ..+++.+.+|| ..+.|++|+.+++..+++..+... ..+..++++++..++..+.+. .+.|+.+..
T Consensus 175 ~~~~~~--~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~~---~G~~r~~~~ 247 (387)
T 2v1u_A 175 NSLGFV--ENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA--FNPGVLDPDVVPLCAALAARE---HGDARRALD 247 (387)
T ss_dssp SCSTTS--SSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH--BCTTTBCSSHHHHHHHHHHSS---SCCHHHHHH
T ss_pred CCCchH--hhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHHh---ccCHHHHHH
Confidence 987421 26799999999 469999999999999998877631 135678899999999988721 233588888
Q ss_pred HHHHHHHHhH
Q psy14504 259 LIDEAAAKIK 268 (951)
Q Consensus 259 ll~~a~~~~~ 268 (951)
++..+...+.
T Consensus 248 ~l~~a~~~a~ 257 (387)
T 2v1u_A 248 LLRVAGEIAE 257 (387)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888875544
No 103
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.58 E-value=2e-14 Score=152.77 Aligned_cols=191 Identities=19% Similarity=0.315 Sum_probs=126.6
Q ss_pred ccCCChHHHHHHHHHHHHhhhcC--CCC-CCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSG--LSD-AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~--~~~-~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~ 516 (951)
+.++|++.+++.+...+...... +.. ...+..+++|+||||||||++|+++|..+ +.+++.++++++...
T Consensus 12 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~---~~~~~~i~~~~~~~~---- 84 (257)
T 1lv7_A 12 ADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA---KVPFFTISGSDFVEM---- 84 (257)
T ss_dssp GGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHH---TCCEEEECSCSSTTS----
T ss_pred HHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHc---CCCEEEEeHHHHHHH----
Confidence 56889999999888876543211 000 01122369999999999999999999988 568899988876542
Q ss_pred cccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhcceeecCCCeEee
Q psy14504 517 RLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRTIN 580 (951)
Q Consensus 517 ~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~~~ 580 (951)
+.|.... +.++..+....++++||||+|.+.. ..++.++..++.-. .
T Consensus 85 --------~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~---------~ 147 (257)
T 1lv7_A 85 --------FVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFE---------G 147 (257)
T ss_dssp --------CCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCC---------S
T ss_pred --------hhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcc---------c
Confidence 2232221 2344445556679999999987643 46677888877411 2
Q ss_pred cCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHHHHHHHH
Q psy14504 581 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILKNKLL 658 (951)
Q Consensus 581 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~ 658 (951)
..++++|+|||.... +.+.+++ ||+..+.|++++.++..+|++..+.+
T Consensus 148 ~~~~~vI~~tn~~~~------------------------l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~------ 197 (257)
T 1lv7_A 148 NEGIIVIAATNRPDV------------------------LDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRR------ 197 (257)
T ss_dssp SSCEEEEEEESCTTT------------------------SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTT------
T ss_pred CCCEEEEEeeCCchh------------------------CCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhc------
Confidence 356789999997532 3455655 99999999999999998886554422
Q ss_pred hcCCccccchHH-HHHHHHhcccccccccccccc
Q psy14504 659 KMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 659 ~~~~~l~~~~~~-~~~L~~~~~~~~~g~~dlhg~ 691 (951)
. .+++++ ...++. ..+.|..+||...
T Consensus 198 -~----~l~~~~~~~~la~--~~~G~~~~dl~~l 224 (257)
T 1lv7_A 198 -V----PLAPDIDAAIIAR--GTPGFSGADLANL 224 (257)
T ss_dssp -S----CBCTTCCHHHHHH--TCTTCCHHHHHHH
T ss_pred -C----CCCccccHHHHHH--HcCCCCHHHHHHH
Confidence 1 222332 444544 2234578888877
No 104
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.58 E-value=1.7e-14 Score=164.19 Aligned_cols=159 Identities=23% Similarity=0.376 Sum_probs=116.5
Q ss_pred ccCCChHHHHHHHHHHHHhhhc-------CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRS-------GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 512 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~-------~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 512 (951)
+.|+|++.+++.+...+..... +.. .| .++||+||||||||++|+++|..+ +.+|+.++++++...
T Consensus 16 ~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~---~p-~gvLL~GppGtGKT~Laraia~~~---~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 16 KDVGGAEEAIEELKEVVEFLKDPSKFNRIGAR---MP-KGILLVGPPGTGKTLLARAVAGEA---NVPFFHISGSDFVEL 88 (476)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCC---CC-SEEEEECCTTSSHHHHHHHHHHHH---TCCEEEEEGGGTTTC
T ss_pred HHhCCcHHHHHHHHHHHHHhhChHHHhhcCCC---CC-CeEEEECCCCCCHHHHHHHHHHHc---CCCeeeCCHHHHHHH
Confidence 5688999999998888765431 111 12 259999999999999999999988 678999998877643
Q ss_pred hchhcccCCCCCCccccc--cchhHHHHHhCCCeEEEEccccccCH--------------HHHHHHHHHhhcceeecCCC
Q psy14504 513 HSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRG 576 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~iDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g 576 (951)
+.|... .+.++..+....++||||||+|.+.+ ..++.|+..|+.-.
T Consensus 89 ------------~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~------ 150 (476)
T 2ce7_A 89 ------------FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFD------ 150 (476)
T ss_dssp ------------CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSC------
T ss_pred ------------HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccC------
Confidence 333222 23455556667789999999998753 46788888887310
Q ss_pred eEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChhhHHHHHHHHH
Q psy14504 577 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 577 ~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
...++++|+|||... .+.|.++ +||+..+.+++++.++..+|++..+
T Consensus 151 ---~~~~viVIaaTn~~~------------------------~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~ 199 (476)
T 2ce7_A 151 ---SKEGIIVMAATNRPD------------------------ILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHT 199 (476)
T ss_dssp ---GGGTEEEEEEESCGG------------------------GSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHH
T ss_pred ---CCCCEEEEEecCChh------------------------hhchhhcccCcceeEeecCCCCHHHHHHHHHHHH
Confidence 234688999999742 2455666 4999999999999999999865444
No 105
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.57 E-value=1.3e-12 Score=174.07 Aligned_cols=134 Identities=14% Similarity=0.219 Sum_probs=96.0
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHH
Q psy14504 53 IRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEI 132 (951)
Q Consensus 53 i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a 132 (951)
...+...+.. ..++++.||+|||||++|+.+|+.+ +.+++.++++.... ...+..+|..+
T Consensus 635 ~~tl~~Al~~--~~~~~l~GpaGtGKTe~vk~LA~~l----------g~~~v~~nc~e~ld--------~~~lg~~~~g~ 694 (2695)
T 4akg_A 635 FATLTDSLHQ--KYGGCFFGPAGTGKTETVKAFGQNL----------GRVVVVFNCDDSFD--------YQVLSRLLVGI 694 (2695)
T ss_dssp HHHHHHHHHT--TCEEEEECCTTSCHHHHHHHHHHTT----------TCCCEEEETTSSCC--------HHHHHHHHHHH
T ss_pred HHHHHHHHHh--CCCCcccCCCCCCcHHHHHHHHHHh----------CCcEEEEECCCCCC--------hhHhhHHHHHH
Confidence 3334444333 3678999999999999999999998 88999999865431 13467777777
Q ss_pred HhcCCCeEEEEecccccccCCCCCCchhHHhhh-------hhhcc---------------CCcEEEEEeecchHHHHhhh
Q psy14504 133 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNML-------KPELS---------------RGELHCIGATTLNEYRQYIE 190 (951)
Q Consensus 133 ~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L-------~~~le---------------~~~i~vI~at~~~~~~~~~~ 190 (951)
... ++++++||++++.+ ++...+ ...+. ...+.+++|+|+ .|.....
T Consensus 695 ~~~--Gaw~~~DE~nr~~~--------evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NP-gy~g~~e 763 (2695)
T 4akg_A 695 TQI--GAWGCFDEFNRLDE--------KVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNP-GYNGRSE 763 (2695)
T ss_dssp HHH--TCEEEEETTTSSCH--------HHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECC-CSSSSCC
T ss_pred Hhc--CCEeeehhhhhcCh--------HHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCC-CccCccc
Confidence 644 46999999998744 222222 12221 124557777776 4666668
Q ss_pred cCHHHhhcceEEEeeCCCHHHHHHHHH
Q psy14504 191 KDAAFERRFQKILVEEPDIEETISILR 217 (951)
Q Consensus 191 ~~~~l~~Rf~~i~~~~p~~~er~~il~ 217 (951)
+++++++||..|.+..|+.+...+|+-
T Consensus 764 LP~~Lk~~Fr~v~m~~Pd~~~i~ei~l 790 (2695)
T 4akg_A 764 LPENLKKSFREFSMKSPQSGTIAEMIL 790 (2695)
T ss_dssp CCHHHHTTEEEEECCCCCHHHHHHHHH
T ss_pred ccHHHHhheEEEEeeCCCHHHHHHHHH
Confidence 999999999999999999998888863
No 106
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.57 E-value=1.7e-15 Score=145.18 Aligned_cols=138 Identities=7% Similarity=0.142 Sum_probs=104.4
Q ss_pred cCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccC
Q psy14504 441 RVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIG 520 (951)
Q Consensus 441 ~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g 520 (951)
.++|++.+++.+...+...... ..+++|+||||||||++|+++++.. . +++.++|+++....
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~-------~~~vll~G~~GtGKt~lA~~i~~~~---~-~~~~~~~~~~~~~~------- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKR-------TSPVFLTGEAGSPFETVARYFHKNG---T-PWVSPARVEYLIDM------- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTC-------SSCEEEEEETTCCHHHHHGGGCCTT---S-CEECCSSTTHHHHC-------
T ss_pred CceeCCHHHHHHHHHHHHHhCC-------CCcEEEECCCCccHHHHHHHHHHhC---C-CeEEechhhCChHh-------
Confidence 4789999999999888765421 1269999999999999999999876 3 88888888754321
Q ss_pred CCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhh
Q psy14504 521 APPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 600 (951)
Q Consensus 521 ~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 600 (951)
....+..+.+++|||||++.++++.|..|+++++++. ..++.+|+|||.+...+ .
T Consensus 67 -------------~~~~~~~a~~~~l~lDei~~l~~~~q~~Ll~~l~~~~----------~~~~~iI~~tn~~~~~~-~- 121 (143)
T 3co5_A 67 -------------PMELLQKAEGGVLYVGDIAQYSRNIQTGITFIIGKAE----------RCRVRVIASCSYAAGSD-G- 121 (143)
T ss_dssp -------------HHHHHHHTTTSEEEEEECTTCCHHHHHHHHHHHHHHT----------TTTCEEEEEEEECTTTC---
T ss_pred -------------hhhHHHhCCCCeEEEeChHHCCHHHHHHHHHHHHhCC----------CCCEEEEEecCCCHHHH-H-
Confidence 2344556667899999999999999999999999742 34678999999876543 2
Q ss_pred ccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCC
Q psy14504 601 EKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLN 638 (951)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~ 638 (951)
.+ |+++|++|+.. .|.+|||.
T Consensus 122 ----------------~~-~~~~L~~rl~~~~i~lPpLr 143 (143)
T 3co5_A 122 ----------------IS-CEEKLAGLFSESVVRIPPLS 143 (143)
T ss_dssp -----------------C-HHHHHHHHSSSEEEEECCCC
T ss_pred ----------------hC-ccHHHHHHhcCcEEeCCCCC
Confidence 33 78899999865 67888873
No 107
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.57 E-value=3e-14 Score=155.97 Aligned_cols=201 Identities=20% Similarity=0.280 Sum_probs=135.3
Q ss_pred CccccHHHHHHHHHHHHcC---------CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCc
Q psy14504 45 PVIGRDDEIRRAIQVLQRR---------SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGT 115 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~~---------~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~ 115 (951)
.++|++..++.+...+... ...++||+||||||||++|+++|+.+... +.+++.++++.+....
T Consensus 18 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~-------~~~~~~~~~~~~~~~~ 90 (311)
T 4fcw_A 18 RVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEKH 90 (311)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSC-------GGGEEEEEGGGCCSTT
T ss_pred hcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCC-------CcceEEeecccccccc
Confidence 5889999998888776642 12479999999999999999999988542 4467778876543110
Q ss_pred ----------cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------
Q psy14504 116 ----------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------- 172 (951)
Q Consensus 116 ----------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~------------- 172 (951)
.+.|... ...+..+.....++||||||++.+. ...++.|+.+++.+
T Consensus 91 ~~~~l~g~~~~~~~~~~---~~~~~~~~~~~~~~vl~lDEi~~l~--------~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 91 AVSRLIGAPPGYVGYEE---GGQLTEAVRRRPYSVILFDAIEKAH--------PDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHHHCCCTTSTTTTT---CCHHHHHHHHCSSEEEEEETGGGSC--------HHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred cHHHhcCCCCccccccc---cchHHHHHHhCCCeEEEEeChhhcC--------HHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 0111100 0122222223446799999999984 36777888888643
Q ss_pred cEEEEEeecch---------------HHHH------hhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhh----
Q psy14504 173 ELHCIGATTLN---------------EYRQ------YIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVH---- 226 (951)
Q Consensus 173 ~i~vI~at~~~---------------~~~~------~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~---- 226 (951)
.+++|+|||.. ++.. ...++++|.+||+. +.+.+|+.+++..|++.++.++...
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 55699999982 1111 11578999999974 9999999999999998877654332
Q ss_pred -cCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHH
Q psy14504 227 -HGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 227 -~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~ 266 (951)
..+.++++++..++..+.. ..+-.+...++++.++..
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~---~~gn~R~L~~~i~~~~~~ 277 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERGYD---PVFGARPLRRVIQRELET 277 (311)
T ss_dssp TCEEEECHHHHHHHHHHSCB---TTTBTTTHHHHHHHHTHH
T ss_pred CcEEEeCHHHHHHHHHhCCC---ccCCchhHHHHHHHHHHH
Confidence 2467899999988875421 112235666677666543
No 108
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.57 E-value=5.9e-14 Score=154.54 Aligned_cols=200 Identities=12% Similarity=0.137 Sum_probs=132.7
Q ss_pred cCCCCCcc-ccH--HHHHHHHHHHHcC--CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14504 40 LGKLDPVI-GRD--DEIRRAIQVLQRR--SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 114 (951)
Q Consensus 40 p~~l~~lv-G~~--~~i~~l~~~l~~~--~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (951)
..+|++++ |+. .....+..++..+ ..++++|+||||||||++|+++++.+... +.+++.+++..+.
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~-------~~~~~~i~~~~~~-- 77 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKR-------GYRVIYSSADDFA-- 77 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHH--
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEHHHHH--
Confidence 34788997 543 4455555555554 35789999999999999999999988543 5678888876653
Q ss_pred ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHH
Q psy14504 115 TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAA 194 (951)
Q Consensus 115 ~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~ 194 (951)
..+.+.........|.... ..+.||||||++.+.... .........+....+.+..+++++++++. ....++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~--~~~~vL~iDEi~~l~~~~--~~~~~l~~~l~~~~~~~~~iii~~~~~~~--~l~~l~~~ 151 (324)
T 1l8q_A 78 QAMVEHLKKGTINEFRNMY--KSVDLLLLDDVQFLSGKE--RTQIEFFHIFNTLYLLEKQIILASDRHPQ--KLDGVSDR 151 (324)
T ss_dssp HHHHHHHHHTCHHHHHHHH--HTCSEEEEECGGGGTTCH--HHHHHHHHHHHHHHHTTCEEEEEESSCGG--GCTTSCHH
T ss_pred HHHHHHHHcCcHHHHHHHh--cCCCEEEEcCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEecCChH--HHHHhhhH
Confidence 1222222111112222222 125699999999986421 00122333333344566666666655443 12358999
Q ss_pred Hhhcc---eEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHH
Q psy14504 195 FERRF---QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAK 266 (951)
Q Consensus 195 l~~Rf---~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~ 266 (951)
+.+|| ..+.|++ +.+++..|++..+.. .++.++++++..++..+ +.+ +.+..+++.++..
T Consensus 152 L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~----~~~~l~~~~l~~l~~~~-g~~------r~l~~~l~~~~~~ 214 (324)
T 1l8q_A 152 LVSRFEGGILVEIEL-DNKTRFKIIKEKLKE----FNLELRKEVIDYLLENT-KNV------REIEGKIKLIKLK 214 (324)
T ss_dssp HHHHHHTSEEEECCC-CHHHHHHHHHHHHHH----TTCCCCHHHHHHHHHHC-SSH------HHHHHHHHHHHHH
T ss_pred hhhcccCceEEEeCC-CHHHHHHHHHHHHHh----cCCCCCHHHHHHHHHhC-CCH------HHHHHHHHHHHHc
Confidence 99999 4599999 999999999988764 46789999999999987 665 7777777776654
No 109
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=1.4e-13 Score=155.57 Aligned_cols=220 Identities=16% Similarity=0.119 Sum_probs=148.2
Q ss_pred hcchHHHHhcCCCCCccccHHHHHHHHHHHHc----CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcC-CCeEEE
Q psy14504 31 TIDLTEKARLGKLDPVIGRDDEIRRAIQVLQR----RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLL-SKKILL 105 (951)
Q Consensus 31 ~~~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~----~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~-~~~~~~ 105 (951)
...|..+++| ++++|++++++.+...+.. ..+.+++|+||||||||++|+++++.+.......... +..++.
T Consensus 10 ~~~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~ 86 (384)
T 2qby_B 10 KVFIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAY 86 (384)
T ss_dssp TTTTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEE
T ss_pred HhhcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEE
Confidence 3456778888 7899999999988876653 4456899999999999999999999874320000001 567788
Q ss_pred Eehhhhh-c-------------Cc--ccccc-HHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhH-Hhhhhh
Q psy14504 106 LDIALLL-A-------------GT--KYRGE-FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDA-GNMLKP 167 (951)
Q Consensus 106 ~~~~~l~-~-------------~~--~~~g~-~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~-~~~L~~ 167 (951)
+++.... . +. ...|. ....+..++..+. .. +.||||||+|.+.... ..+. ...|..
T Consensus 87 i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~-~~-~~vlilDEi~~l~~~~----~~~~~l~~l~~ 160 (384)
T 2qby_B 87 VNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTR-NI-RAIIYLDEVDTLVKRR----GGDIVLYQLLR 160 (384)
T ss_dssp EEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHS-SS-CEEEEEETTHHHHHST----TSHHHHHHHHT
T ss_pred EECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhc-cC-CCEEEEECHHHhccCC----CCceeHHHHhc
Confidence 8865432 0 00 01111 1223444444443 22 3399999999996532 1233 334444
Q ss_pred hccCCcEEEEEeecchHHHHhhhcCHHHhhcce-EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q psy14504 168 ELSRGELHCIGATTLNEYRQYIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 246 (951)
Q Consensus 168 ~le~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~-~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 246 (951)
.. ..+.+|++|+..++ ...+++++.+||. .+.|++|+.+++..+++..+... ..+..+++++++.++..+.+.
T Consensus 161 ~~--~~~~iI~~t~~~~~--~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~i~~~~~~~ 234 (384)
T 2qby_B 161 SD--ANISVIMISNDINV--RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYG--LIKGTYDDEILSYIAAISAKE 234 (384)
T ss_dssp SS--SCEEEEEECSSTTT--TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHT--SCTTSCCSHHHHHHHHHHHTT
T ss_pred CC--cceEEEEEECCCch--HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhh--cccCCcCHHHHHHHHHHHHhc
Confidence 33 68999999998742 1267999999986 59999999999999998877531 124578899999999988721
Q ss_pred cccCCCchhHHHHHHHHHHHhH
Q psy14504 247 ISDRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 247 ~~~~~~p~~a~~ll~~a~~~~~ 268 (951)
.+.++.+.++++.+...+.
T Consensus 235 ---~G~~r~a~~~l~~a~~~a~ 253 (384)
T 2qby_B 235 ---HGDARKAVNLLFRAAQLAS 253 (384)
T ss_dssp ---CCCHHHHHHHHHHHHHHTT
T ss_pred ---cCCHHHHHHHHHHHHHHhc
Confidence 1234788888888876554
No 110
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.57 E-value=7.3e-14 Score=186.36 Aligned_cols=139 Identities=17% Similarity=0.272 Sum_probs=97.7
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH----h------
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS----N------ 134 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~----~------ 134 (951)
..++||+||||||||+++..+...+ .+..++.+++++... ...+...++.-. .
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l---------~~~~~~~infS~~Tt--------a~~l~~~~e~~~e~~~~~~~G~~ 1366 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAF---------PDFEVVSLNFSSATT--------PELLLKTFDHHCEYKRTPSGETV 1366 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGC---------TTEEEEEECCCTTCC--------HHHHHHHHHHHEEEEECTTSCEE
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhC---------CCCceEEEEeeCCCC--------HHHHHHHHhhcceEEeccCCCcc
Confidence 4799999999999998876554433 144567777655431 123334443210 0
Q ss_pred -----cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC--------------cEEEEEeecchHHHHhhhcCHHH
Q psy14504 135 -----NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG--------------ELHCIGATTLNEYRQYIEKDAAF 195 (951)
Q Consensus 135 -----~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~--------------~i~vI~at~~~~~~~~~~~~~~l 195 (951)
.++..|+||||++. +..+..|.+.....|+++++.+ ++.+|+|+|++...+-..++++|
T Consensus 1367 ~~p~~~Gk~~VlFiDDiNm--p~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf 1444 (3245)
T 3vkg_A 1367 LRPTQLGKWLVVFCDEINL--PSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRF 1444 (3245)
T ss_dssp EEESSTTCEEEEEETTTTC--CCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHH
T ss_pred cCCCcCCceEEEEecccCC--CCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHH
Confidence 13347999999995 4444456667778888888532 47799999987423345789999
Q ss_pred hhcceEEEeeCCCHHHHHHHHHHHHHh
Q psy14504 196 ERRFQKILVEEPDIEETISILRGLQKK 222 (951)
Q Consensus 196 ~~Rf~~i~~~~p~~~er~~il~~~~~~ 222 (951)
.|||..+.++.|+.++...|+..+...
T Consensus 1445 ~r~F~vi~i~~ps~esL~~If~til~~ 1471 (3245)
T 3vkg_A 1445 LRHAPILLVDFPSTSSLTQIYGTFNRA 1471 (3245)
T ss_dssp HTTCCEEECCCCCHHHHHHHHHHHHHH
T ss_pred HhhceEEEeCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999998877664
No 111
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.57 E-value=2.5e-14 Score=160.08 Aligned_cols=210 Identities=20% Similarity=0.273 Sum_probs=141.4
Q ss_pred ccccHHHHHHHHHHHH-------------c--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh
Q psy14504 46 VIGRDDEIRRAIQVLQ-------------R--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL 110 (951)
Q Consensus 46 lvG~~~~i~~l~~~l~-------------~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~ 110 (951)
++|++..++.+...+. . ..+.++||+||||||||++|+++|+.+ +.+++.++++.
T Consensus 17 i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~----------~~~~~~~~~~~ 86 (363)
T 3hws_A 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLL----------DVPFTMADATT 86 (363)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHT----------TCCEEEEEHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHc----------CCCEEEechHH
Confidence 7999999998887662 1 256789999999999999999999998 78999999987
Q ss_pred hhcCccccccH-HHHHHHHHHHHH---hcCCCeEEEEecccccccCCCCCC-c-----hhHHhhhhhhccCC--------
Q psy14504 111 LLAGTKYRGEF-EDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKVEG-S-----IDAGNMLKPELSRG-------- 172 (951)
Q Consensus 111 l~~~~~~~g~~-~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~~~-~-----~~~~~~L~~~le~~-------- 172 (951)
+.. ..+.|.. ...+..++..+. ....++||||||+|.+.+.+...+ + ..+++.|+..|+..
T Consensus 87 l~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~ 165 (363)
T 3hws_A 87 LTE-AGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQG 165 (363)
T ss_dssp HTT-CHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC--------
T ss_pred hcc-cccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCcc
Confidence 652 2355543 445566665541 112366999999999987643321 1 12678888888721
Q ss_pred ---------------cEEEEEeecchHHHHh----------------------------------------hhcCHHHhh
Q psy14504 173 ---------------ELHCIGATTLNEYRQY----------------------------------------IEKDAAFER 197 (951)
Q Consensus 173 ---------------~i~vI~at~~~~~~~~----------------------------------------~~~~~~l~~ 197 (951)
.+.+|++++...+.+. ..+.|.|.+
T Consensus 166 ~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~ 245 (363)
T 3hws_A 166 GRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG 245 (363)
T ss_dssp --------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHT
T ss_pred ccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc
Confidence 2345555553221111 016899999
Q ss_pred cceE-EEeeCCCHHHHHHHHHH----HHHhhhh-----hcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHh
Q psy14504 198 RFQK-ILVEEPDIEETISILRG----LQKKYEV-----HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 198 Rf~~-i~~~~p~~~er~~il~~----~~~~~~~-----~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
||+. +.|.+|+.+++.+|+.. +...+.. ...+.+++++++.++..+.. ...-.+...++++.++...
T Consensus 246 R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~---~~~gaR~L~~~ie~~~~~~ 322 (363)
T 3hws_A 246 RLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMA---RKTGARGLRSIVEAALLDT 322 (363)
T ss_dssp TCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH---TTCTTTTHHHHHHHHHHHH
T ss_pred ccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcC---CccCchHHHHHHHHHHHHH
Confidence 9997 77999999999999875 5544322 22356899999998875432 1222355667777766554
Q ss_pred HH
Q psy14504 268 KI 269 (951)
Q Consensus 268 ~~ 269 (951)
..
T Consensus 323 l~ 324 (363)
T 3hws_A 323 MY 324 (363)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 112
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.57 E-value=2.7e-14 Score=154.20 Aligned_cols=166 Identities=23% Similarity=0.370 Sum_probs=115.8
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCC----CCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGL----SDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 515 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~----~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 515 (951)
+.++|++.+++.+...+....... .....+..++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 17 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~--- 90 (285)
T 3h4m_A 17 EDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATET---NATFIRVVGSELVKK--- 90 (285)
T ss_dssp GGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHT---TCEEEEEEGGGGCCC---
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEehHHHHHh---
Confidence 567899999998888775431110 0000122379999999999999999999998 678888888776542
Q ss_pred hcccCCCCCCcccccc--chhHHHHHhCCCeEEEEcccccc-----------CHHHHHHHHHHhhcceeecCCCeEeecC
Q psy14504 516 SRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKA-----------NSDVFNILLQILDDGRLTDNRGRTINFR 582 (951)
Q Consensus 516 ~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~-----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 582 (951)
+.|.... ..++..+....++||||||+|.+ ....+..|+.+++...-.. ...
T Consensus 91 ---------~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~------~~~ 155 (285)
T 3h4m_A 91 ---------FIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFD------ARG 155 (285)
T ss_dssp ---------STTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTC------SSS
T ss_pred ---------ccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCC------CCC
Confidence 3333222 33445566677899999999987 5566777776665311000 124
Q ss_pred CeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHH
Q psy14504 583 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 583 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
++++|+|||... .+.+.+++ ||+.++.|++++.++..+|+...+
T Consensus 156 ~~~vI~ttn~~~------------------------~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~ 201 (285)
T 3h4m_A 156 DVKIIGATNRPD------------------------ILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHT 201 (285)
T ss_dssp SEEEEEECSCGG------------------------GBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHH
T ss_pred CEEEEEeCCCch------------------------hcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHH
Confidence 688999998642 35677777 998899999999999999966543
No 113
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.57 E-value=4.6e-14 Score=158.74 Aligned_cols=210 Identities=21% Similarity=0.278 Sum_probs=134.6
Q ss_pred CccccHHHHHHHHHHHH------------------------------cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCC
Q psy14504 45 PVIGRDDEIRRAIQVLQ------------------------------RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEV 94 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~------------------------------~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~ 94 (951)
.++|++.+++.+...+. .....++||+||||||||++|+++|+.+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l----- 96 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHL----- 96 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHT-----
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHh-----
Confidence 58999998888876651 1246789999999999999999999988
Q ss_pred CCCcCCCeEEEEehhhhhcCccccccH-HHHHHHHHHHHH---hcCCCeEEEEecccccccCCCC------CCchhHHhh
Q psy14504 95 PNSLLSKKILLLDIALLLAGTKYRGEF-EDRLKKILKEIS---NNQKDIIIFIDELHTMIGTGKV------EGSIDAGNM 164 (951)
Q Consensus 95 ~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~~l~~~~~~a~---~~~~~~iL~iDEid~l~~~~~~------~~~~~~~~~ 164 (951)
+.+++.+++..+.. ..+.|.. +..+..++.... ....++||||||++.+...+.. .....+++.
T Consensus 97 -----~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~ 170 (376)
T 1um8_A 97 -----DIPIAISDATSLTE-AGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQA 170 (376)
T ss_dssp -----TCCEEEEEGGGCC---------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHH
T ss_pred -----CCCEEEecchhhhh-cCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHH
Confidence 77888888876542 2233432 334444444321 0123669999999999765221 111237788
Q ss_pred hhhhccCC-----------------------cEEEEEeecchHHHH----------------------------------
Q psy14504 165 LKPELSRG-----------------------ELHCIGATTLNEYRQ---------------------------------- 187 (951)
Q Consensus 165 L~~~le~~-----------------------~i~vI~at~~~~~~~---------------------------------- 187 (951)
|+.+|+.+ .+++|++||......
T Consensus 171 Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 250 (376)
T 1um8_A 171 LLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHD 250 (376)
T ss_dssp HHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHH
T ss_pred HHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHH
Confidence 88888743 347778776321111
Q ss_pred --hhhcCHHHhhcceE-EEeeCCCHHHHHHHHH----HHHHhhhh-----hcCCCCChHHHHHHHHHhhhhcccCCCchh
Q psy14504 188 --YIEKDAAFERRFQK-ILVEEPDIEETISILR----GLQKKYEV-----HHGVEITDPAIVAASELSYRYISDRFMPDK 255 (951)
Q Consensus 188 --~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~----~~~~~~~~-----~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~ 255 (951)
...+.|.|.+||+. +.|++++.++...|+. .+..++.. ..++.++++++..++..+.. ...-.+.
T Consensus 251 l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~---~~~~~R~ 327 (376)
T 1um8_A 251 LVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALE---RKTGARG 327 (376)
T ss_dssp HHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHH---TTCTGGG
T ss_pred HhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcc---cccCcHH
Confidence 12467999999965 9999999999999996 34433221 22467899999998887541 1122367
Q ss_pred HHHHHHHHHHHhH
Q psy14504 256 AIDLIDEAAAKIK 268 (951)
Q Consensus 256 a~~ll~~a~~~~~ 268 (951)
+.++++.++....
T Consensus 328 L~~~le~~~~~~~ 340 (376)
T 1um8_A 328 LRAIIEDFCLDIM 340 (376)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777777665433
No 114
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.56 E-value=4e-14 Score=157.78 Aligned_cols=205 Identities=14% Similarity=0.180 Sum_probs=122.4
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc----CCCceEEeccccccchhc-
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN----NEESIIRIDMSEFIEKHS- 514 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~----~~~~~~~~~~~~~~~~~~- 514 (951)
+.++|++.++..+........ .+++||+||||||||++|+++|+.+.. .+.++ +|........
T Consensus 24 ~~i~G~~~~~~~l~~~~~~~~---------~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~~~~~~~~~~ 91 (350)
T 1g8p_A 24 SAIVGQEDMKLALLLTAVDPG---------IGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SSPNVEMIPDW 91 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHCGG---------GCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CCSSGGGSCTT
T ss_pred hhccChHHHHHHHHHHhhCCC---------CceEEEECCCCccHHHHHHHHHHhCccccccccccc---cccccccccch
Confidence 458899998776544433211 125999999999999999999998732 01121 2221111000
Q ss_pred -----------------------hhcccCCCCC---CccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhc
Q psy14504 515 -----------------------ISRLIGAPPG---YIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDD 568 (951)
Q Consensus 515 -----------------------~~~l~g~~~~---~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~ 568 (951)
...++|...- ..+ .........+..+.++||||||++.+++.+++.|++.+++
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~-~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~ 170 (350)
T 1g8p_A 92 ATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISK-GEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQS 170 (350)
T ss_dssp CCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHH-CGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHH
T ss_pred hhhhccccccCCCcccccCCCcchhhheeechhhhhhcC-CceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhc
Confidence 0111111000 000 0000001122334579999999999999999999999998
Q ss_pred ceee--cCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCC-hhhHHHH
Q psy14504 569 GRLT--DNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN-RKNILSI 645 (951)
Q Consensus 569 g~~~--~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~-~~~~~~i 645 (951)
|... ...+......++++|+|||... ..++++|++||+..+.+++++ .++..+|
T Consensus 171 ~~~~~~~~g~~~~~~~~~~li~~~n~~~-----------------------~~l~~~L~~R~~~~~~l~~~~~~~~~~~i 227 (350)
T 1g8p_A 171 GENVVERDGLSIRHPARFVLVGSGNPEE-----------------------GDLRPQLLDRFGLSVEVLSPRDVETRVEV 227 (350)
T ss_dssp SEEEECCTTCCEEEECCEEEEEEECSCS-----------------------CCCCHHHHTTCSEEEECCCCCSHHHHHHH
T ss_pred CceEEEecceEEeeCCceEEEEEeCCCC-----------------------CCCCHHHHhhcceEEEcCCCCcHHHHHHH
Confidence 7533 2222222335788999999522 147899999998789999995 5555577
Q ss_pred HHHHHHHH-----------------HHH---HHhcCCccccchHHHHHHHHhccc
Q psy14504 646 ANIQLNIL-----------------KNK---LLKMNMDLKISKAALKKISNIGFD 680 (951)
Q Consensus 646 ~~~~l~~~-----------------~~~---~~~~~~~l~~~~~~~~~L~~~~~~ 680 (951)
+...+... ... .+.....+.++++++++|+...+.
T Consensus 228 l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~ 282 (350)
T 1g8p_A 228 IRRRDTYDADPKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIA 282 (350)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHH
T ss_pred HHHHHhcccCchhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHH
Confidence 76632210 011 111122368999999999985543
No 115
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.56 E-value=2e-14 Score=161.36 Aligned_cols=210 Identities=18% Similarity=0.250 Sum_probs=129.1
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh---
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS--- 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~--- 516 (951)
+.++|++.+++.+.........+. .|..++||+||||||||++|+++|+.+. ...+++.+++..+.......
T Consensus 44 ~~ivG~~~~~~~l~~l~~~~~~~~----~~~~~vLl~GppGtGKT~la~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~~ 118 (368)
T 3uk6_A 44 QGMVGQLAARRAAGVVLEMIREGK----IAGRAVLIAGQPGTGKTAIAMGMAQALG-PDTPFTAIAGSEIFSLEMSKTEA 118 (368)
T ss_dssp TTEESCHHHHHHHHHHHHHHHTTC----CTTCEEEEEESTTSSHHHHHHHHHHHHC-SSCCEEEEEGGGGSCSSSCHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHcCC----CCCCEEEEECCCCCCHHHHHHHHHHHhc-ccCCcccccchhhhhcccchhHH
Confidence 568899999988777666555432 2224799999999999999999999984 23477777766533221000
Q ss_pred ------c----------------------------ccCCCCCCccccccchhHHHH----H----hC----CCeEEEEcc
Q psy14504 517 ------R----------------------------LIGAPPGYIGYEEGGYLTEIV----R----RK----PYSLILLDE 550 (951)
Q Consensus 517 ------~----------------------------l~g~~~~~~g~~~~~~l~~~~----~----~~----~~~vl~iDE 550 (951)
. +.+...++.|... ..+...+ . .. .++||||||
T Consensus 119 ~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDE 197 (368)
T 3uk6_A 119 LTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIK-SEVREQINAKVAEWREEGKAEIIPGVLFIDE 197 (368)
T ss_dssp HHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------C-HHHHHHHHHHHHHHHHHTC---CBCEEEEES
T ss_pred HHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccH-HHHHHHHHHHHHHhhhhccccccCceEEEhh
Confidence 0 0011111111111 1111111 1 11 147999999
Q ss_pred ccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCc
Q psy14504 551 IEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD 630 (951)
Q Consensus 551 id~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~ 630 (951)
+|.+++..++.|++.+++. ... +++++++.+...+...... ....+++.+++||.
T Consensus 198 i~~l~~~~~~~L~~~le~~-----------~~~-~~ii~t~~~~~~i~~t~~~------------~~~~l~~~l~sR~~- 252 (368)
T 3uk6_A 198 VHMLDIESFSFLNRALESD-----------MAP-VLIMATNRGITRIRGTSYQ------------SPHGIPIDLLDRLL- 252 (368)
T ss_dssp GGGSBHHHHHHHHHHTTCT-----------TCC-EEEEEESCSEEECBTSSCE------------EETTCCHHHHTTEE-
T ss_pred ccccChHHHHHHHHHhhCc-----------CCC-eeeeecccceeeeeccCCC------------CcccCCHHHHhhcc-
Confidence 9999999999999999862 122 3445555332211110000 01246789999995
Q ss_pred EEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccc
Q psy14504 631 IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 631 ~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~ 691 (951)
++.|+|++.+++.+|+...+.. .+ +.++++++++|+.... .+++|++...
T Consensus 253 ~i~~~~~~~~e~~~il~~~~~~-------~~--~~~~~~~l~~l~~~~~--~G~~r~~~~l 302 (368)
T 3uk6_A 253 IVSTTPYSEKDTKQILRIRCEE-------ED--VEMSEDAYTVLTRIGL--ETSLRYAIQL 302 (368)
T ss_dssp EEEECCCCHHHHHHHHHHHHHH-------TT--CCBCHHHHHHHHHHHH--HSCHHHHHHH
T ss_pred EEEecCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHHhc--CCCHHHHHHH
Confidence 6899999999999997665533 34 6789999999998442 2334444444
No 116
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.56 E-value=2.9e-14 Score=158.92 Aligned_cols=215 Identities=17% Similarity=0.217 Sum_probs=134.8
Q ss_pred hcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcC----CCCCCcC---------------
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIING----EVPNSLL--------------- 99 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~----~~~~~~~--------------- 99 (951)
+|.+|++++|++..++.+...+......++||+||||||||++|+++++.+... ..+....
T Consensus 19 ~~~~f~~i~G~~~~~~~l~~~~~~~~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (350)
T 1g8p_A 19 PVFPFSAIVGQEDMKLALLLTAVDPGIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLSTN 98 (350)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHHCGGGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSCCC
T ss_pred CCCCchhccChHHHHHHHHHHhhCCCCceEEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhccc
Confidence 667899999999977766555555556789999999999999999999987320 0110000
Q ss_pred ----CCeEEEEehhhhhcCccccccHHHHHHHHHHHHH--------hcCCCeEEEEecccccccCCCCCCchhHHhhhhh
Q psy14504 100 ----SKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS--------NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKP 167 (951)
Q Consensus 100 ----~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~--------~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~ 167 (951)
..+++.+..+... ....|... +...+.... ....+.||||||++.+.+ +.++.|+.
T Consensus 99 ~~~~~~~~~~~~~~~~~--~~l~g~~~--~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~--------~~~~~Ll~ 166 (350)
T 1g8p_A 99 VIRKPTPVVDLPLGVSE--DRVVGALD--IERAISKGEKAFEPGLLARANRGYLYIDECNLLED--------HIVDLLLD 166 (350)
T ss_dssp EEEECCCEEEECTTCCH--HHHHCEEC--HHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCH--------HHHHHHHH
T ss_pred cccCCCcccccCCCcch--hhheeech--hhhhhcCCceeecCceeeecCCCEEEEeChhhCCH--------HHHHHHHH
Confidence 0112222211000 00011100 011111110 001256999999999843 55667777
Q ss_pred hccCC---------------cEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCC-CHHHHHHHHHHHHH---------
Q psy14504 168 ELSRG---------------ELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEP-DIEETISILRGLQK--------- 221 (951)
Q Consensus 168 ~le~~---------------~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p-~~~er~~il~~~~~--------- 221 (951)
.++.+ .+++|++||+.+ ..++++|++||.. +.+++| +.+++..|++....
T Consensus 167 ~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~----~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~ 242 (350)
T 1g8p_A 167 VAQSGENVVERDGLSIRHPARFVLVGSGNPEE----GDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFL 242 (350)
T ss_dssp HHHHSEEEECCTTCCEEEECCEEEEEEECSCS----CCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHhcCceEEEecceEEeeCCceEEEEEeCCCC----CCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhc
Confidence 77643 688999999743 2689999999987 999999 57777788865211
Q ss_pred ----------------hhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhHHhh
Q psy14504 222 ----------------KYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKIEI 271 (951)
Q Consensus 222 ----------------~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~~~ 271 (951)
......++.++++++..++..+.+.- ...++.+..+++.+...+..+.
T Consensus 243 ~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~--~~~~R~~~~ll~~a~~~A~~~~ 306 (350)
T 1g8p_A 243 EEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALG--SDGLRGELTLLRSARALAALEG 306 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSS--SCSHHHHHHHHHHHHHHHHHTT
T ss_pred cccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhC--CCCccHHHHHHHHHHHHHHHcC
Confidence 01123356899999999998876521 1135778888888776665443
No 117
>3e7a_A PP-1A, serine/threonine-protein phosphatase PP1-alpha Ca subunit; carbohydrate metabolism, cell cycle, cell division; HET: 1ZN; 1.63A {Homo sapiens} SCOP: d.159.1.3 PDB: 3e7b_A* 3egg_A* 3egh_A* 3hvq_A 3v4y_A* 3n5u_A 1jk7_A* 1it6_A* 2bcd_A* 2bdx_A* 2o8g_A 2o8a_A 1u32_A* 1s70_A*
Probab=99.55 E-value=1e-14 Score=154.33 Aligned_cols=148 Identities=22% Similarity=0.307 Sum_probs=106.9
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhhcccCCccceeecc
Q psy14504 636 YLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLG 715 (951)
Q Consensus 636 ~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~g 715 (951)
.++++++..+...... .+..+..-+.+ ..+.+.+|||||++.+|.++++.+++. +.+.++|+|
T Consensus 28 ~l~~~~~~~l~~~~~~----il~~ep~ll~~------------~~~i~viGDIHG~~~~L~~ll~~~g~~-~~~~~vfLG 90 (299)
T 3e7a_A 28 QLTENEIRGLCLKSRE----IFLSQPILLEL------------EAPLKICGDIHGQYYDLLRLFEYGGFP-PESNYLFLG 90 (299)
T ss_dssp CCCHHHHHHHHHHHHH----HHHHSCSEEEE------------CSSEEEECBCTTCHHHHHHHHHHHCST-TSSCEEECS
T ss_pred CCCHHHHHHHHHHHHH----HHHhCCCeeec------------CCCEEEEecCCCCHHHHHHHHHHhCCC-CCccEEeCC
Confidence 3677887777554333 33333222222 235788999999999999999999974 568899999
Q ss_pred cccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhcccCCccccHHHhhCCCCHHHHHHHHhcCCceEE-e
Q psy14504 716 DLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLININKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-Y 790 (951)
Q Consensus 716 d~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~-~ 790 (951)
|++|||+.+.+|+++++++ ++++++|+||||.+.+....+.. +...........+.+.+|++.||++.. .
T Consensus 91 D~VDrG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~i~~~ygF~-----~e~~~ky~~~l~~~~~~~f~~LPlaaii~ 165 (299)
T 3e7a_A 91 DYVDRGKQSLETICLLLAYKIKYPENFFLLRGNHECASINRIYGFY-----DECKRRYNIKLWKTFTDCFNCLPIAAIVD 165 (299)
T ss_dssp CCSSSSSCHHHHHHHHHHHHHHSTTTEEECCCTTSSHHHHHHHSHH-----HHHHHHSCHHHHHHHHHHHTTCCCEEEET
T ss_pred cccCCCCCcHHHHHHHHHHHhhCCCcEEEEecCchhhhhcccccch-----HHHHHHhhHHHHHHHHHHHhhCCceEEEC
Confidence 9999999999999999877 45789999999998775432211 011111122234678899999999854 5
Q ss_pred CCEEEEecccCcCCC
Q psy14504 791 KKYLMIHAGVAKQWT 805 (951)
Q Consensus 791 ~~~~~vHAG~~p~~~ 805 (951)
+++++||||+.|++.
T Consensus 166 ~~il~vHGGlsp~~~ 180 (299)
T 3e7a_A 166 EKIFCCHGGLSPDLQ 180 (299)
T ss_dssp TTEEEESSCCCTTCC
T ss_pred CeEEEEcCccCcccC
Confidence 689999999999863
No 118
>3icf_A PPT, serine/threonine-protein phosphatase T; IRO metalloprotein, structural genomics, PSI-2, protein structu initiative; 2.30A {Saccharomyces cerevisiae}
Probab=99.55 E-value=8.2e-15 Score=157.29 Aligned_cols=119 Identities=23% Similarity=0.363 Sum_probs=94.5
Q ss_pred ccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhc
Q psy14504 681 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLINI 756 (951)
Q Consensus 681 ~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~ 756 (951)
+.+.+|||||++.+|.++++.+++.+..+.++|+||++|||+.+++|+++++++ ++++++|+||||.+.+....+.
T Consensus 65 ri~viGDIHG~~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~ygf 144 (335)
T 3icf_A 65 KISVCGDTHGQFYDVLNLFRKFGKVGPKHTYLFNGDFVDRGSWSCEVALLFYCLKILHPNNFFLNRGNHESDNMNKIYGF 144 (335)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHCCCBTTEEEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHHSH
T ss_pred eEEEEecCCCCHHHHHHHHHHcCCCCCCcEEEEeCCccCCCcChHHHHHHHHHHhhhCCCcEEEecCchhhhhhhhcccc
Confidence 378899999999999999999998666678999999999999999999999887 3678999999999887644321
Q ss_pred ccCCccccHHHhhCCCCHHHHHHHHhcCCceEEe-CCEEEEeccc-CcCC
Q psy14504 757 NKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIYY-KKYLMIHAGV-AKQW 804 (951)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~~-~~~~~vHAG~-~p~~ 804 (951)
. +...........+.+.+|++.||++... +++++||||+ .|.+
T Consensus 145 ~-----~e~~~k~~~~l~~~~~~~f~~LPlaaii~~~il~vHGGl~sp~~ 189 (335)
T 3icf_A 145 E-----DECKYKYSQRIFNMFAQSFESLPLATLINNDYLVMHGGLPSDPS 189 (335)
T ss_dssp H-----HHHHHHSCHHHHHHHHHHHTTSCSEEEETTTEEECSSCCCSCTT
T ss_pred c-----hHhHhhccHHHHHHHHHHHhhcceeEEEcCcEEEecCCcCCCcc
Confidence 1 1111112223357889999999998664 4899999999 6764
No 119
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.54 E-value=1e-13 Score=156.45 Aligned_cols=210 Identities=19% Similarity=0.263 Sum_probs=144.5
Q ss_pred CCccccHHHHHHHHHHHH----cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc------
Q psy14504 44 DPVIGRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA------ 113 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~----~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~------ 113 (951)
++++|++++++.+...+. .....+++|+||||||||++++++++.+...... +..++.+++.....
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~ 95 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG----KFKHVYINTRQIDTPYRVLA 95 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS----SCEEEEEEHHHHCSHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC----CceEEEEECCCCCCHHHHHH
Confidence 789999999999998776 4556789999999999999999999987432100 45677777643210
Q ss_pred ------Cc--ccccc-HHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhc---cCCcEEEEEeec
Q psy14504 114 ------GT--KYRGE-FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL---SRGELHCIGATT 181 (951)
Q Consensus 114 ------~~--~~~g~-~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l---e~~~i~vI~at~ 181 (951)
+. ...+. .......++..+.....+.||+|||++.+.... ..+....|...+ ....+.+|++|+
T Consensus 96 ~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~----~~~~l~~l~~~~~~~~~~~~~~I~~~~ 171 (386)
T 2qby_A 96 DLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKY----NDDILYKLSRINSEVNKSKISFIGITN 171 (386)
T ss_dssp HHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSS----CSTHHHHHHHHHHSCCC--EEEEEEES
T ss_pred HHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccC----cCHHHHHHhhchhhcCCCeEEEEEEEC
Confidence 00 01121 233345555555544458999999999997532 123444455555 456889999999
Q ss_pred chHHHHhhhcCHHHhhcc--eEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHH
Q psy14504 182 LNEYRQYIEKDAAFERRF--QKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDL 259 (951)
Q Consensus 182 ~~~~~~~~~~~~~l~~Rf--~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~l 259 (951)
..++. ..+++.+.+|| ..+.|++++.++..++++..+... .....++++++..++..+.. ..+.|+.++.+
T Consensus 172 ~~~~~--~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~--~~~~~~~~~~~~~l~~~~~~---~~G~~r~~~~l 244 (386)
T 2qby_A 172 DVKFV--DLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMA--FKPGVLPDNVIKLCAALAAR---EHGDARRALDL 244 (386)
T ss_dssp CGGGG--GGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHH--BCSSCSCHHHHHHHHHHHHH---TTCCHHHHHHH
T ss_pred CCChH--hhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhh--ccCCCCCHHHHHHHHHHHHH---hcCCHHHHHHH
Confidence 77532 25688999999 469999999999999998766532 12457889999999988862 11335888888
Q ss_pred HHHHHHHhH
Q psy14504 260 IDEAAAKIK 268 (951)
Q Consensus 260 l~~a~~~~~ 268 (951)
+..++..+.
T Consensus 245 l~~a~~~a~ 253 (386)
T 2qby_A 245 LRVSGEIAE 253 (386)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888765544
No 120
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.54 E-value=2.3e-14 Score=164.73 Aligned_cols=159 Identities=18% Similarity=0.325 Sum_probs=119.7
Q ss_pred ccCCChHHHHHHHHHHHHhhh--------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSR--------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~--------~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
..++|++.+++.+...+.... .+. .+..++||+||||||||++|++||+.+ +.+|+.++|+++..
T Consensus 204 ~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~----~~~~~vLL~GppGtGKT~lAraia~~~---~~~fv~vn~~~l~~ 276 (489)
T 3hu3_A 204 DDIGGCRKQLAQIKEMVELPLRHPALFKAIGV----KPPRGILLYGPPGTGKTLIARAVANET---GAFFFLINGPEIMS 276 (489)
T ss_dssp GGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTC----CCCCEEEEECSTTSSHHHHHHHHHHHC---SSEEEEEEHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCC----CCCCcEEEECcCCCCHHHHHHHHHHHh---CCCEEEEEchHhhh
Confidence 568999999999998886531 111 122379999999999999999999988 77999999987764
Q ss_pred hhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCH-----------HHHHHHHHHhhcceeecCCCeE
Q psy14504 512 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANS-----------DVFNILLQILDDGRLTDNRGRT 578 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~-----------~~~~~Ll~~le~g~~~~~~g~~ 578 (951)
. +.|.... ..++..+....++||||||||.+.+ .+++.|+..|+...
T Consensus 277 ~------------~~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~-------- 336 (489)
T 3hu3_A 277 K------------LAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLK-------- 336 (489)
T ss_dssp S------------CTTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSC--------
T ss_pred h------------hcchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhccc--------
Confidence 3 3343322 3344555666779999999976653 78999999998421
Q ss_pred eecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHH
Q psy14504 579 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 579 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
...+++||+|||... .+.+.+.+ ||+..+.|++++.++..+|++..+
T Consensus 337 -~~~~v~vIaaTn~~~------------------------~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~ 385 (489)
T 3hu3_A 337 -QRAHVIVMAATNRPN------------------------SIDPALRRFGRFDREVDIGIPDATGRLEILQIHT 385 (489)
T ss_dssp -TTSCEEEEEEESCGG------------------------GBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHT
T ss_pred -cCCceEEEEecCCcc------------------------ccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHH
Confidence 235688999999743 24567776 999999999999999999965443
No 121
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.54 E-value=5.3e-14 Score=150.12 Aligned_cols=199 Identities=15% Similarity=0.126 Sum_probs=120.2
Q ss_pred CCCCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC-----
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG----- 114 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~----- 114 (951)
+|++++|++..++.+...+. .....++||+||||||||++|+++++.+... +.+++.++++.+...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~-------~~~~~~v~~~~~~~~~~~~~ 76 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRW-------QGPFISLNCAALNENLLDSE 76 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTT-------TSCEEEEEGGGSCHHHHHHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCcc-------CCCeEEEecCCCChhHHHHH
Confidence 68899999999988887665 3556899999999999999999999876321 457888888764210
Q ss_pred --ccccccHHHH---HHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEE
Q psy14504 115 --TKYRGEFEDR---LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHC 176 (951)
Q Consensus 115 --~~~~g~~~~~---l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~v 176 (951)
+...|.+... ....+..+ .+.+|||||++.+.+ +.++.|+..++.+ .+.+
T Consensus 77 l~g~~~~~~~g~~~~~~~~l~~a----~~~~l~lDEi~~l~~--------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~i 144 (265)
T 2bjv_A 77 LFGHEAGAFTGAQKRHPGRFERA----DGGTLFLDELATAPM--------MVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 (265)
T ss_dssp HHCCC---------CCCCHHHHT----TTSEEEEESGGGSCH--------HHHHHHHHHHHHCEECCCCC--CEECCCEE
T ss_pred hcCCcccccccccccccchhhhc----CCcEEEEechHhcCH--------HHHHHHHHHHHhCCeecCCCcccccCCeEE
Confidence 0000000000 01122222 245999999999843 5566777777542 5789
Q ss_pred EEeecchHHHH--hhhcCHHHhhcceEEEeeCCCHH----HHHHHHHHHHHhhhhhcCC----CCChHHHHHHHHHh-hh
Q psy14504 177 IGATTLNEYRQ--YIEKDAAFERRFQKILVEEPDIE----ETISILRGLQKKYEVHHGV----EITDPAIVAASELS-YR 245 (951)
Q Consensus 177 I~at~~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~~----er~~il~~~~~~~~~~~~~----~i~~~~l~~~~~~s-~~ 245 (951)
|+|||.+.... .-.+.+.|.+||..+.+..|+.. +...+++.++..+....+. .++++++..+.... .+
T Consensus 145 I~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~g 224 (265)
T 2bjv_A 145 VCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPG 224 (265)
T ss_dssp EEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTT
T ss_pred EEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCC
Confidence 99999853211 12367999999975555555544 4445555555554433333 68899988776542 22
Q ss_pred hcccCCCchhHHHHHHHHHH
Q psy14504 246 YISDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 246 ~~~~~~~p~~a~~ll~~a~~ 265 (951)
-+ +...++++.++.
T Consensus 225 n~------reL~~~l~~~~~ 238 (265)
T 2bjv_A 225 NI------RELKNVVERSVY 238 (265)
T ss_dssp HH------HHHHHHHHHHHH
T ss_pred CH------HHHHHHHHHHHH
Confidence 22 455566666554
No 122
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.54 E-value=4.7e-14 Score=168.06 Aligned_cols=206 Identities=16% Similarity=0.198 Sum_probs=132.9
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc--------
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE-------- 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~-------- 511 (951)
..++||+.+++.+...+.... +++|+||||||||++|++||..+.......+.+.+.....
T Consensus 41 ~~i~G~~~~l~~l~~~i~~g~-----------~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~p~i~~~ 109 (604)
T 3k1j_A 41 DQVIGQEHAVEVIKTAANQKR-----------HVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENMPRIKTV 109 (604)
T ss_dssp HHCCSCHHHHHHHHHHHHTTC-----------CEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTSCEEEEE
T ss_pred ceEECchhhHhhccccccCCC-----------EEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccCCcEEEE
Confidence 568899999999998887432 6999999999999999999998854332222222111110
Q ss_pred ------------------------------------------------------hhchhcccCCCC-------CCccccc
Q psy14504 512 ------------------------------------------------------KHSISRLIGAPP-------GYIGYEE 530 (951)
Q Consensus 512 ------------------------------------------------------~~~~~~l~g~~~-------~~~g~~~ 530 (951)
......++|... +..+...
T Consensus 110 p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~ 189 (604)
T 3k1j_A 110 PACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAH 189 (604)
T ss_dssp ETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGG
T ss_pred ecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCcccccc
Confidence 011122333110 0000001
Q ss_pred cchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCC----------eEeecCCeEEEEecCCCchhhhhh
Q psy14504 531 GGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRG----------RTINFRNTIIVMTSNLGSDKIKEM 600 (951)
Q Consensus 531 ~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g----------~~~~~~~~iiI~ttn~~~~~~~~~ 600 (951)
.......+..+.+++|||||++.+++.+|+.|++.|+++.+....+ ......++.+|+|||..
T Consensus 190 ~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~------- 262 (604)
T 3k1j_A 190 ERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLD------- 262 (604)
T ss_dssp GGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHH-------
T ss_pred ccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHH-------
Confidence 1112234556778999999999999999999999999988875321 11123578899999942
Q ss_pred ccccHHHHHHHHHHHHHhccChhHhhccC---cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHh
Q psy14504 601 EKGDKEIIKLAVMNEVKIYFRPEFINRID---DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 677 (951)
Q Consensus 601 ~~~~~~~~~~~~~~~~~~~f~p~l~~R~~---~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 677 (951)
+...|+|+|++||+ ..++|++..++. ...+..++..+...+...+....+++++++.|.+.
T Consensus 263 ---------------~~~~l~~~l~~R~~v~~i~i~l~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~ 326 (604)
T 3k1j_A 263 ---------------TVDKMHPALRSRIRGYGYEVYMRTTMPDT-IENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVRE 326 (604)
T ss_dssp ---------------HHHHSCHHHHHHHHHHSEEEECCSEEECC-HHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHH
T ss_pred ---------------HHhhcCHHHHHHhhccceEeeccccccCC-HHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHH
Confidence 12358999999996 466776554332 33344445555555554444568999999999985
Q ss_pred cc
Q psy14504 678 GF 679 (951)
Q Consensus 678 ~~ 679 (951)
.+
T Consensus 327 ~~ 328 (604)
T 3k1j_A 327 AQ 328 (604)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 123
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.54 E-value=1.9e-13 Score=154.65 Aligned_cols=215 Identities=12% Similarity=0.118 Sum_probs=148.4
Q ss_pred chHHHHhcCCCCCccccHHHHHHHHHHHHc----CCCC--CcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 33 DLTEKARLGKLDPVIGRDDEIRRAIQVLQR----RSKN--NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~~i~~l~~~l~~----~~~~--~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
.|..+|+| ++++|++.+++.+...+.. ..+. +++|+||||||||++++++++.+.... +..++.+
T Consensus 9 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~------~~~~~~i 79 (389)
T 1fnn_A 9 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT------TARFVYI 79 (389)
T ss_dssp GGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC------CCEEEEE
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc------CeeEEEE
Confidence 35566766 6899999999998887764 3334 799999999999999999999884321 3567777
Q ss_pred ehhhhhc------------Cc--cccc-cHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC
Q psy14504 107 DIALLLA------------GT--KYRG-EFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR 171 (951)
Q Consensus 107 ~~~~l~~------------~~--~~~g-~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~ 171 (951)
++..... +. ...+ ........+...+....++.||+|||++.+. .+....|...++.
T Consensus 80 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~--------~~~~~~L~~~~~~ 151 (389)
T 1fnn_A 80 NGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLA--------PDILSTFIRLGQE 151 (389)
T ss_dssp ETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSC--------HHHHHHHHHHTTC
T ss_pred eCccCCCHHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccc--------hHHHHHHHHHHHh
Confidence 7543210 00 0011 1222233333333334568899999999981 3556667666643
Q ss_pred ------CcEEEEEeecchHHHHhhhcCHHHhhcce--EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHh
Q psy14504 172 ------GELHCIGATTLNEYRQYIEKDAAFERRFQ--KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELS 243 (951)
Q Consensus 172 ------~~i~vI~at~~~~~~~~~~~~~~l~~Rf~--~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s 243 (951)
..+.+|++|+..++.. .+++.+.+||. .+.|++++.++...+++..+.... ....++++++..++..+
T Consensus 152 ~~~~~~~~~~iI~~~~~~~~~~--~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 152 ADKLGAFRIALVIVGHNDAVLN--NLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGL--AEGSYSEDILQMIADIT 227 (389)
T ss_dssp HHHHSSCCEEEEEEESSTHHHH--TSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHB--CTTSSCHHHHHHHHHHH
T ss_pred CCCCCcCCEEEEEEECCchHHH--HhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhc--CCCCCCHHHHHHHHHHH
Confidence 5789999998875322 57899999997 499999999999999987765421 13468999999999988
Q ss_pred hhhcc---cCCCchhHHHHHHHHHHHhH
Q psy14504 244 YRYIS---DRFMPDKAIDLIDEAAAKIK 268 (951)
Q Consensus 244 ~~~~~---~~~~p~~a~~ll~~a~~~~~ 268 (951)
.+... ..+.|+.+..+++.++..+.
T Consensus 228 ~~~~~~~~~~G~~r~~~~~l~~a~~~a~ 255 (389)
T 1fnn_A 228 GAQTPLDTNRGDARLAIDILYRSAYAAQ 255 (389)
T ss_dssp SBSSTTCTTSCCHHHHHHHHHHHHHHHH
T ss_pred hhcccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 43210 02345888888888776554
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.53 E-value=1.8e-13 Score=141.54 Aligned_cols=168 Identities=21% Similarity=0.350 Sum_probs=121.2
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISR 517 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~ 517 (951)
..++|++.+++.+...+.... .++++|+||||||||++|+++++.+... ...++.++++.........
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 86 (226)
T 2chg_A 17 DEVVGQDEVIQRLKGYVERKN---------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERGIDVVR- 86 (226)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC---------CCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTCHHHHH-
T ss_pred HHHcCcHHHHHHHHHHHhCCC---------CCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccChHHHH-
Confidence 568899999999998887432 1249999999999999999999987432 2345556554332211110
Q ss_pred ccCCCCCCccccccchhHHHHH-----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCC
Q psy14504 518 LIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 592 (951)
Q Consensus 518 l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 592 (951)
..+..... ...++||||||++.+.+..++.|+..+++ ...++.+|++||.
T Consensus 87 --------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~-----------~~~~~~~i~~~~~ 141 (226)
T 2chg_A 87 --------------HKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-----------YSKSCRFILSCNY 141 (226)
T ss_dssp --------------HHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHH-----------TTTTEEEEEEESC
T ss_pred --------------HHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHh-----------cCCCCeEEEEeCC
Confidence 11112221 24578999999999999999999999986 2356788888885
Q ss_pred CchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHH
Q psy14504 593 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 672 (951)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 672 (951)
.. .+.+.+.+|+. .+.|+|++.+++.+++...+. ..+ +.+++++++
T Consensus 142 ~~------------------------~~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~-------~~~--~~~~~~~~~ 187 (226)
T 2chg_A 142 VS------------------------RIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICE-------KEG--VKITEDGLE 187 (226)
T ss_dssp GG------------------------GSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHH-------HHT--CCBCHHHHH
T ss_pred hh------------------------hcCHHHHHhCc-eeecCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHH
Confidence 32 35688999995 999999999999988665443 234 458889999
Q ss_pred HHHH
Q psy14504 673 KISN 676 (951)
Q Consensus 673 ~L~~ 676 (951)
.|+.
T Consensus 188 ~l~~ 191 (226)
T 2chg_A 188 ALIY 191 (226)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8886
No 125
>3ll8_A Serine/threonine-protein phosphatase 2B catalytic alpha isoform; protein-peptide docking, protein targeting, AKA beta-augmentation, calmodulin-binding, membrane, hydrolase; 2.00A {Homo sapiens} PDB: 2p6b_A 1m63_A* 1tco_A* 1mf8_A* 2jog_A
Probab=99.53 E-value=1.6e-14 Score=155.46 Aligned_cols=120 Identities=18% Similarity=0.311 Sum_probs=94.3
Q ss_pred cccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhh
Q psy14504 680 DLIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLIN 755 (951)
Q Consensus 680 ~~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~ 755 (951)
.+.+.+|||||++.+|.++++..++ ++.+.++|+||++|||+.+++|+++++++ ++++++|+||||.+.+....+
T Consensus 70 ~pi~ViGDIHG~~~dL~~ll~~~g~-~~~~~~vfLGD~VDRG~~s~Evl~lL~~lk~~~p~~v~llrGNHE~~~i~~~yg 148 (357)
T 3ll8_A 70 APVTVCGDIHGQFFDLMKLFEVGGS-PANTRYLFLGDYVDRGYFSIECVLYLWALKILYPKTLFLLRGNHECRHLTEYFT 148 (357)
T ss_dssp SSEEEECCCTTCHHHHHHHHHHHCC-TTTCCEEECSCCSSSSTTHHHHHHHHHHHHHHCTTTEEECCCTTSSHHHHHHSS
T ss_pred ccceeeccCCCCHHHHHHHHHhcCC-CCCcEEEECCCccCCCcChHHHHHHHHHhhhhcCCcEEEEeCchhhhhhhcccC
Confidence 4678899999999999999987774 56789999999999999999999999887 357899999999988764432
Q ss_pred cccCCccccHHHhhCCCCHHHHHHHHhcCCceEE-eCCEEEEecccCcCCC
Q psy14504 756 INKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-YKKYLMIHAGVAKQWT 805 (951)
Q Consensus 756 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~-~~~~~~vHAG~~p~~~ 805 (951)
.. +...........+.+.+|++.||++.. .+++++||||+.|++.
T Consensus 149 F~-----~E~~~ky~~~l~~~~~~~f~~LPlaaii~~~il~vHGGlsp~l~ 194 (357)
T 3ll8_A 149 FK-----QECKIKYSERVYDACMDAFDCLPLAALMNQQFLCVHGGLSPEIN 194 (357)
T ss_dssp HH-----HHHHHHSCHHHHHHHHHHHHTSCSEEEETTTEEECSSCCCTTCC
T ss_pred ch-----hhhhhccchhHHHHHHHHHHhCCcceEEcccEEEEecCcCcccC
Confidence 11 111111122234778999999999854 5689999999999864
No 126
>3h63_A Serine/threonine-protein phosphatase 5; metalloenzyme, inhibitors, drug design, cytoplasm, hydrolase, iron, manganese, metal-binding, nucleus; HET: NHC; 1.30A {Homo sapiens} SCOP: d.159.1.3 PDB: 3h60_A* 3h61_A* 3h62_C* 3h64_A* 3h66_A 3h67_A* 3h68_A* 3h69_A* 1s95_A
Probab=99.53 E-value=1.8e-14 Score=153.47 Aligned_cols=118 Identities=20% Similarity=0.313 Sum_probs=92.6
Q ss_pred ccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhc
Q psy14504 681 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLINI 756 (951)
Q Consensus 681 ~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~ 756 (951)
+.+.+|||||++.+|.++++..++.+..+.++|+||++|||+.+.+|+++++++ ++++++|+||||.+++....+.
T Consensus 61 ri~viGDIHG~~~~L~~ll~~~g~~~~~~~~vflGD~VDRG~~s~evl~lL~~lk~~~p~~v~~lrGNHE~~~l~~~ygf 140 (315)
T 3h63_A 61 KITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGF 140 (315)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSH
T ss_pred eEEEEecCCCCHHHHHHHHHHhCCCCCCCEEEEeCCccCCCcChHHHHHHHHHhhhhcCCcEEEEecCcccccccccccc
Confidence 368899999999999999999998766667999999999999999999999987 4678999999999987654322
Q ss_pred ccCCccccHHHhhCCCCHHHHHHHHhcCCceEE-eCCEEEEeccc-CcC
Q psy14504 757 NKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-YKKYLMIHAGV-AKQ 803 (951)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~-~~~~~~vHAG~-~p~ 803 (951)
. +...........+.+.+|++.||++.. .+++++||||+ +|.
T Consensus 141 ~-----~e~~~k~~~~l~~~~~~~f~~LPla~ii~~~il~vHGGl~sp~ 184 (315)
T 3h63_A 141 E-----GEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSED 184 (315)
T ss_dssp H-----HHHHHHSCHHHHHHHHHHHTTSCSEEEETTTEEECSSCCCSST
T ss_pred c-----HHHHHHhhhHHHHHHHHHHhcCCcEEEEcCCEEEeCCCCCCcc
Confidence 1 111111112224667899999999855 56899999999 453
No 127
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.53 E-value=2.8e-14 Score=154.87 Aligned_cols=198 Identities=15% Similarity=0.197 Sum_probs=128.6
Q ss_pred CCccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc--------
Q psy14504 44 DPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------- 113 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~-------- 113 (951)
++++|++..++.+...+.. ....++||+||||||||++|+++++..... +.+++.++++.+..
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~-------~~~~v~v~~~~~~~~l~~~~lf 74 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARS-------DRPLVTLNCAALNESLLESELF 74 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCS-------SSCCCEEECSSCCHHHHHHHHT
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCccc-------CCCeEEEeCCCCChHHHHHHhc
Confidence 4689999999998887764 567899999999999999999999876332 45677777654421
Q ss_pred C---ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEEE
Q psy14504 114 G---TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCI 177 (951)
Q Consensus 114 ~---~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~vI 177 (951)
| +.+.|... .....|..+. +.+|||||++.+.. +.+..|+..++.+ .+++|
T Consensus 75 g~~~g~~tg~~~-~~~g~~~~a~----~g~L~LDEi~~l~~--------~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI 141 (304)
T 1ojl_A 75 GHEKGAFTGADK-RREGRFVEAD----GGTLFLDEIGDISP--------LMQVRLLRAIQEREVQRVGSNQTISVDVRLI 141 (304)
T ss_dssp CCCSSCCC---C-CCCCHHHHHT----TSEEEEESCTTCCH--------HHHHHHHHHHHSSBCCBTTBCCCCBCCCEEE
T ss_pred CccccccCchhh-hhcCHHHhcC----CCEEEEeccccCCH--------HHHHHHHHHHhcCEeeecCCcccccCCeEEE
Confidence 1 01111111 1123344442 45899999999843 5666777777654 38899
Q ss_pred EeecchHHHH--hhhcCHHHhhcceEEEeeCCCH----HHHHHHHHHHHHhhhhhc---CCCCChHHHHHHHHHh-hhhc
Q psy14504 178 GATTLNEYRQ--YIEKDAAFERRFQKILVEEPDI----EETISILRGLQKKYEVHH---GVEITDPAIVAASELS-YRYI 247 (951)
Q Consensus 178 ~at~~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~----~er~~il~~~~~~~~~~~---~~~i~~~~l~~~~~~s-~~~~ 247 (951)
+|||.+.... .-...+.|.+||..+.+..|+. ++...+++.++.++.... ...++++++..+...+ .+-
T Consensus 142 ~atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGn- 220 (304)
T 1ojl_A 142 AATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGN- 220 (304)
T ss_dssp EEESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSH-
T ss_pred EecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCC-
Confidence 9999863211 1135788999997655555554 445556777666554333 3578999998887764 222
Q ss_pred ccCCCchhHHHHHHHHHHHh
Q psy14504 248 SDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 248 ~~~~~p~~a~~ll~~a~~~~ 267 (951)
.+...++++.++..+
T Consensus 221 -----vReL~~~l~~~~~~~ 235 (304)
T 1ojl_A 221 -----IRELENAIERAVVLL 235 (304)
T ss_dssp -----HHHHHHHHHHHHHHC
T ss_pred -----HHHHHHHHHHHHHhC
Confidence 255666666665543
No 128
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.53 E-value=6.2e-14 Score=160.10 Aligned_cols=206 Identities=17% Similarity=0.213 Sum_probs=134.7
Q ss_pred CCCCcc-ccH--HHHHHHHHHHHcCC-CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccc
Q psy14504 42 KLDPVI-GRD--DEIRRAIQVLQRRS-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKY 117 (951)
Q Consensus 42 ~l~~lv-G~~--~~i~~l~~~l~~~~-~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 117 (951)
+|+++| |+. .....+..+...+. .++++|+|||||||||+|+++++.+.... .+..++.+++..+. ...
T Consensus 103 tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~-----~~~~v~~v~~~~~~--~~~ 175 (440)
T 2z4s_A 103 TFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNE-----PDLRVMYITSEKFL--NDL 175 (440)
T ss_dssp SGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHC-----CSSCEEEEEHHHHH--HHH
T ss_pred ChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhC-----CCCeEEEeeHHHHH--HHH
Confidence 788888 644 34455555555443 67899999999999999999999874421 15677878876653 111
Q ss_pred cccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHHhhhcCHHHhh
Q psy14504 118 RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQYIEKDAAFER 197 (951)
Q Consensus 118 ~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~~~~~~~~l~~ 197 (951)
.+.........|.... ...+.||||||++.+.... .........+....+.+..++|++.+++. ....+++++.+
T Consensus 176 ~~~~~~~~~~~~~~~~-~~~~~vL~IDEi~~l~~~~--~~q~~l~~~l~~l~~~~~~iIitt~~~~~--~l~~l~~~L~s 250 (440)
T 2z4s_A 176 VDSMKEGKLNEFREKY-RKKVDILLIDDVQFLIGKT--GVQTELFHTFNELHDSGKQIVICSDREPQ--KLSEFQDRLVS 250 (440)
T ss_dssp HHHHHTTCHHHHHHHH-TTTCSEEEEECGGGGSSCH--HHHHHHHHHHHHHHTTTCEEEEEESSCGG--GCSSCCHHHHH
T ss_pred HHHHHcccHHHHHHHh-cCCCCEEEEeCcccccCCh--HHHHHHHHHHHHHHHCCCeEEEEECCCHH--HHHHHHHHHHh
Confidence 1111111111222221 1146799999999986421 01122333333334566666665544443 12237899999
Q ss_pred cce---EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHhHH
Q psy14504 198 RFQ---KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKIKI 269 (951)
Q Consensus 198 Rf~---~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~~~ 269 (951)
||. .+.+++|+.+++..|++..+.. .++.++++++..++..+.+.+ +.+..+++.++..+..
T Consensus 251 R~~~g~~i~l~~p~~e~r~~iL~~~~~~----~~~~i~~e~l~~la~~~~gn~------R~l~~~L~~~~~~a~~ 315 (440)
T 2z4s_A 251 RFQMGLVAKLEPPDEETRKSIARKMLEI----EHGELPEEVLNFVAENVDDNL------RRLRGAIIKLLVYKET 315 (440)
T ss_dssp HHHSSBCCBCCCCCHHHHHHHHHHHHHH----HTCCCCTTHHHHHHHHCCSCH------HHHHHHHHHHHHHHHH
T ss_pred hccCCeEEEeCCCCHHHHHHHHHHHHHH----cCCCCCHHHHHHHHHhcCCCH------HHHHHHHHHHHHHHHH
Confidence 995 5999999999999999887764 467889999999998876655 8888888888766543
No 129
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.52 E-value=1.9e-13 Score=150.71 Aligned_cols=169 Identities=21% Similarity=0.349 Sum_probs=123.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC--CceEEeccccccchhchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 517 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 517 (951)
..++|++.+++.+...+.... .++++|+||||||||++|+++++.+.+.. ..++.+++++........
T Consensus 25 ~~~~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~- 94 (327)
T 1iqp_A 25 DDIVGQEHIVKRLKHYVKTGS---------MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERGINVIR- 94 (327)
T ss_dssp TTCCSCHHHHHHHHHHHHHTC---------CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHHHHTTH-
T ss_pred HHhhCCHHHHHHHHHHHHcCC---------CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCchHHHH-
Confidence 468999999999998887532 12699999999999999999999875332 235555554432111000
Q ss_pred ccCCCCCCccccccchhHHHHH-----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCC
Q psy14504 518 LIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL 592 (951)
Q Consensus 518 l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~ 592 (951)
..+..... ...++||||||+|.+++..++.|+..+++ ...+++||+++|.
T Consensus 95 --------------~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~i~~~~~ 149 (327)
T 1iqp_A 95 --------------EKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEM-----------FSSNVRFILSCNY 149 (327)
T ss_dssp --------------HHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHH-----------TTTTEEEEEEESC
T ss_pred --------------HHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHh-----------cCCCCeEEEEeCC
Confidence 11112211 24578999999999999999999999986 2356788888886
Q ss_pred CchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHH
Q psy14504 593 GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALK 672 (951)
Q Consensus 593 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~ 672 (951)
.. .+.+.+.+|+. .+.|+|++.+++.+++...+ ...+ +.+++++++
T Consensus 150 ~~------------------------~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~-------~~~~--~~~~~~~~~ 195 (327)
T 1iqp_A 150 SS------------------------KIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIA-------ENEG--LELTEEGLQ 195 (327)
T ss_dssp GG------------------------GSCHHHHHTEE-EEECCCCCHHHHHHHHHHHH-------HTTT--CEECHHHHH
T ss_pred cc------------------------ccCHHHHhhCc-EEEecCCCHHHHHHHHHHHH-------HhcC--CCCCHHHHH
Confidence 32 35678899995 89999999999998855443 3344 568999999
Q ss_pred HHHHh
Q psy14504 673 KISNI 677 (951)
Q Consensus 673 ~L~~~ 677 (951)
+|+..
T Consensus 196 ~l~~~ 200 (327)
T 1iqp_A 196 AILYI 200 (327)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99874
No 130
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.52 E-value=2.5e-14 Score=154.01 Aligned_cols=221 Identities=12% Similarity=0.019 Sum_probs=142.6
Q ss_pred CCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC-------CCceEEeccccccchhc
Q psy14504 442 VVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-------EESIIRIDMSEFIEKHS 514 (951)
Q Consensus 442 v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~-------~~~~~~~~~~~~~~~~~ 514 (951)
+.|.+.-+..+...+...-.+ .+.++++++||||||||++++.+++.+... ...++.++|..+.+...
T Consensus 22 L~~Re~E~~~i~~~L~~~i~~-----~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~ 96 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLMS-----SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDA 96 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT-----TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HH
T ss_pred cCCHHHHHHHHHHHHHHHhcC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHH
Confidence 446666677777777654432 122379999999999999999999998422 24678889988766533
Q ss_pred h-----hcccCCCCCCccccccchhHHHHH-----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCe
Q psy14504 515 I-----SRLIGAPPGYIGYEEGGYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNT 584 (951)
Q Consensus 515 ~-----~~l~g~~~~~~g~~~~~~l~~~~~-----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 584 (951)
+ ..+.|....+ |.. ...+...+. .....|+||||+|.+. .|+.|+.+++-.. .+..++
T Consensus 97 ~~~~I~~~L~g~~~~~-~~~-~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~--~q~~L~~l~~~~~--------~~~s~~ 164 (318)
T 3te6_A 97 LYEKIWFAISKENLCG-DIS-LEALNFYITNVPKAKKRKTLILIQNPENLL--SEKILQYFEKWIS--------SKNSKL 164 (318)
T ss_dssp HHHHHHHHHSCCC--C-CCC-HHHHHHHHHHSCGGGSCEEEEEEECCSSSC--CTHHHHHHHHHHH--------CSSCCE
T ss_pred HHHHHHHHhcCCCCCc-hHH-HHHHHHHHHHhhhccCCceEEEEecHHHhh--cchHHHHHHhccc--------ccCCcE
Confidence 2 2333442211 111 122333332 3456899999999998 5677777765210 133567
Q ss_pred EEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccC-cEEEecCCChhhHHHHHHHHHHHHHHH-H-----
Q psy14504 585 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRID-DIIVFRYLNRKNILSIANIQLNILKNK-L----- 657 (951)
Q Consensus 585 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~-~~i~f~~l~~~~~~~i~~~~l~~~~~~-~----- 657 (951)
++|+++|..... ...+.+.+.+|+. .+|.|+||+.+++.+|+...+..+... +
T Consensus 165 ~vI~i~n~~d~~--------------------~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~ 224 (318)
T 3te6_A 165 SIICVGGHNVTI--------------------REQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVND 224 (318)
T ss_dssp EEEEECCSSCCC--------------------HHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECT
T ss_pred EEEEEecCcccc--------------------hhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccc
Confidence 888888863210 1123566778986 589999999999999999888765321 0
Q ss_pred -------------H------h-cCCccccchHHHHHHHHhcccccccccccccchHHHHHHHHhh
Q psy14504 658 -------------L------K-MNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILLKKI 702 (951)
Q Consensus 658 -------------~------~-~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l~~~ 702 (951)
. . ..+.+.++++++++++++... .-||+...++.++++++-.
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~---~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 225 KKEMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVAN---VSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp TCCEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHH---HHCSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccCHHHHHHHHHHHHh---hCChHHHHHHHHHHHHHHH
Confidence 0 0 012357899999999985322 2588888888888877544
No 131
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.51 E-value=1.2e-13 Score=151.73 Aligned_cols=167 Identities=22% Similarity=0.339 Sum_probs=122.2
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC--CceEEeccccccchhchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 517 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 517 (951)
..++|++.+++.+...+.... .++++|+||||||||++|+++++.+.+.. ..++.+++++...
T Consensus 17 ~~~~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~------ 81 (319)
T 2chq_A 17 DEVVGQDEVIQRLKGYVERKN---------IPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG------ 81 (319)
T ss_dssp GGSCSCHHHHHHHHTTTTTTC---------CCCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC------
T ss_pred HHHhCCHHHHHHHHHHHhCCC---------CCeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC------
Confidence 458899999988887765321 12599999999999999999999985432 2456666654221
Q ss_pred ccCCCCCCcccccc-chhHHHHH-----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecC
Q psy14504 518 LIGAPPGYIGYEEG-GYLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 591 (951)
Q Consensus 518 l~g~~~~~~g~~~~-~~l~~~~~-----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 591 (951)
.... ..+..... ...++||||||+|.+++..++.|++.+++ ...++++|++||
T Consensus 82 ----------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~i~~~~ 140 (319)
T 2chq_A 82 ----------IDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEM-----------YSKSCRFILSCN 140 (319)
T ss_dssp ----------TTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSS-----------SSSSEEEEEEES
T ss_pred ----------hHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHh-----------cCCCCeEEEEeC
Confidence 1111 11222221 24578999999999999999999999986 346788999988
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 671 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 671 (951)
... .+.+.+.+|+ ..+.|.|++.+++.+++...+ ...+ +.++++++
T Consensus 141 ~~~------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~-------~~~~--~~i~~~~l 186 (319)
T 2chq_A 141 YVS------------------------RIIEPIQSRC-AVFRFKPVPKEAMKKRLLEIC-------EKEG--VKITEDGL 186 (319)
T ss_dssp CGG------------------------GSCHHHHTTC-EEEECCCCCHHHHHHHHHHHH-------HTTC--CCBCHHHH
T ss_pred Chh------------------------hcchHHHhhC-eEEEecCCCHHHHHHHHHHHH-------HHcC--CCCCHHHH
Confidence 532 3678899999 599999999999988855443 3345 56899999
Q ss_pred HHHHH
Q psy14504 672 KKISN 676 (951)
Q Consensus 672 ~~L~~ 676 (951)
+.|+.
T Consensus 187 ~~l~~ 191 (319)
T 2chq_A 187 EALIY 191 (319)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 99986
No 132
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.50 E-value=1.8e-14 Score=154.47 Aligned_cols=190 Identities=16% Similarity=0.273 Sum_probs=118.1
Q ss_pred hhccCCChHHHHHHHHHH----HHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh
Q psy14504 438 LCKRVVGQDEAISAVSNA----IRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH 513 (951)
Q Consensus 438 l~~~v~Gq~~~~~~l~~~----~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~ 513 (951)
+...++|++.+++.+... ....... ...+..++||+||||||||++|+++|+.+ +.+++.+++++.
T Consensus 31 ~~~~~i~~~~~~~~i~~~~~~l~~~l~~~---~~~~~~~vLl~G~~GtGKT~la~~ia~~~---~~~~~~i~~~~~---- 100 (272)
T 1d2n_A 31 IMNGIIKWGDPVTRVLDDGELLVQQTKNS---DRTPLVSVLLEGPPHSGKTALAAKIAEES---NFPFIKICSPDK---- 100 (272)
T ss_dssp CTTCCCCCSHHHHHHHHHHHHHHHHHHHC---SSCSEEEEEEECSTTSSHHHHHHHHHHHH---TCSEEEEECGGG----
T ss_pred HhcCCCCccHHHHHHHHHHHHHHHHHhcc---CCCCCeEEEEECCCCCcHHHHHHHHHHHh---CCCEEEEeCHHH----
Confidence 345678888877766663 2222211 12344589999999999999999999997 668888877641
Q ss_pred chhcccCCCCCCccccccchhHHHHHhCCCeEEEEcccccc----------CHHHHHHHHHHhhcceeecCCCeEeecCC
Q psy14504 514 SISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKA----------NSDVFNILLQILDDGRLTDNRGRTINFRN 583 (951)
Q Consensus 514 ~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~----------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~ 583 (951)
++|...+ ........++..+...+++||||||+|.+ ...+++.|+..++... ....+
T Consensus 101 ----~~g~~~~-~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~--------~~~~~ 167 (272)
T 1d2n_A 101 ----MIGFSET-AKCQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAP--------PQGRK 167 (272)
T ss_dssp ----CTTCCHH-HHHHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCC--------STTCE
T ss_pred ----hcCCchH-HHHHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCcc--------CCCCC
Confidence 2221100 00001122333344567899999999987 5567777777776310 02245
Q ss_pred eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccCh-hHhhccCcEEEecCCCh-hhHHHHHHHHHHHHHHHHHhcC
Q psy14504 584 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRP-EFINRIDDIIVFRYLNR-KNILSIANIQLNILKNKLLKMN 661 (951)
Q Consensus 584 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p-~l~~R~~~~i~f~~l~~-~~~~~i~~~~l~~~~~~~~~~~ 661 (951)
+++|+|||.... +.+ .+.+||+..+.|++++. +++.+++...
T Consensus 168 ~~ii~ttn~~~~------------------------l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~~------------ 211 (272)
T 1d2n_A 168 LLIIGTTSRKDV------------------------LQEMEMLNAFSTTIHVPNIATGEQLLEALELL------------ 211 (272)
T ss_dssp EEEEEEESCHHH------------------------HHHTTCTTTSSEEEECCCEEEHHHHHHHHHHH------------
T ss_pred EEEEEecCChhh------------------------cchhhhhcccceEEcCCCccHHHHHHHHHHhc------------
Confidence 678888886321 112 45689888999999988 7776664331
Q ss_pred CccccchHHHHHHHHh--ccccccccccc
Q psy14504 662 MDLKISKAALKKISNI--GFDLIYGARDV 688 (951)
Q Consensus 662 ~~l~~~~~~~~~L~~~--~~~~~~g~~dl 688 (951)
..++++++..++.. +|.|..++|.+
T Consensus 212 --~~~~~~~~~~l~~~~~g~~~~g~ir~l 238 (272)
T 1d2n_A 212 --GNFKDKERTTIAQQVKGKKVWIGIKKL 238 (272)
T ss_dssp --TCSCHHHHHHHHHHHTTSEEEECHHHH
T ss_pred --CCCCHHHHHHHHHHhcCCCccccHHHH
Confidence 24578888888764 34444444443
No 133
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=8.2e-14 Score=155.41 Aligned_cols=184 Identities=18% Similarity=0.270 Sum_probs=122.9
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc---CCCceEEeccccccchhchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN---NEESIIRIDMSEFIEKHSIS 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~---~~~~~~~~~~~~~~~~~~~~ 516 (951)
..++|++++++.+...+.... .++++|+||||||||++|+++++.+.. ....+..+++++......+.
T Consensus 37 ~~i~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 107 (353)
T 1sxj_D 37 DEVTAQDHAVTVLKKTLKSAN---------LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDERGISIVR 107 (353)
T ss_dssp TTCCSCCTTHHHHHHHTTCTT---------CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCCCHHHHT
T ss_pred HHhhCCHHHHHHHHHHHhcCC---------CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEccccccchHHHH
Confidence 568899999998888875322 125999999999999999999998742 23456667766532211111
Q ss_pred cccCC-CCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCch
Q psy14504 517 RLIGA-PPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 595 (951)
Q Consensus 517 ~l~g~-~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~ 595 (951)
..+.. ....+... ............+.||||||++.+++..++.|++.+++ ...++.||+++|...
T Consensus 108 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~le~-----------~~~~~~~il~~~~~~- 174 (353)
T 1sxj_D 108 EKVKNFARLTVSKP-SKHDLENYPCPPYKIIILDEADSMTADAQSALRRTMET-----------YSGVTRFCLICNYVT- 174 (353)
T ss_dssp THHHHHHHSCCCCC-CTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHHHH-----------TTTTEEEEEEESCGG-
T ss_pred HHHHHHhhhccccc-chhhcccCCCCCceEEEEECCCccCHHHHHHHHHHHHh-----------cCCCceEEEEeCchh-
Confidence 00000 00000000 00000011123467999999999999999999999997 234677888887532
Q ss_pred hhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHH
Q psy14504 596 KIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKIS 675 (951)
Q Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~ 675 (951)
.+.+.+.+|+. .+.|.|++.+++..++...+ ...+ +.++++++++|+
T Consensus 175 -----------------------~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~-------~~~~--~~i~~~~l~~l~ 221 (353)
T 1sxj_D 175 -----------------------RIIDPLASQCS-KFRFKALDASNAIDRLRFIS-------EQEN--VKCDDGVLERIL 221 (353)
T ss_dssp -----------------------GSCHHHHHHSE-EEECCCCCHHHHHHHHHHHH-------HTTT--CCCCHHHHHHHH
T ss_pred -----------------------hCcchhhccCc-eEEeCCCCHHHHHHHHHHHH-------HHhC--CCCCHHHHHHHH
Confidence 25688999994 89999999999998865543 3344 678999999999
Q ss_pred Hhc
Q psy14504 676 NIG 678 (951)
Q Consensus 676 ~~~ 678 (951)
...
T Consensus 222 ~~~ 224 (353)
T 1sxj_D 222 DIS 224 (353)
T ss_dssp HHT
T ss_pred HHc
Confidence 843
No 134
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.49 E-value=3.3e-13 Score=148.83 Aligned_cols=182 Identities=15% Similarity=0.186 Sum_probs=131.8
Q ss_pred cHHHHHHHHHHHHcCCCCC-cEEEcCCCCcHHHHHHHHHHHHHcCCCCCC--------------cCCCeEEEEehhhhhc
Q psy14504 49 RDDEIRRAIQVLQRRSKNN-PVLIGEPGVGKTAIVEGLAQRIINGEVPNS--------------LLSKKILLLDIALLLA 113 (951)
Q Consensus 49 ~~~~i~~l~~~l~~~~~~~-iLL~GppGtGKTtla~~la~~l~~~~~~~~--------------~~~~~~~~~~~~~l~~ 113 (951)
+++.++.+...+..+..+| +||+||||+|||++|+++|+.+.+...... ....+++.++...
T Consensus 7 ~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~--- 83 (334)
T 1a5t_A 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK--- 83 (334)
T ss_dssp GHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---
T ss_pred hHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---
Confidence 5667778888888777666 899999999999999999999865321100 0012344444321
Q ss_pred CccccccHHHHHHHHHHHHHhc---CCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHh
Q psy14504 114 GTKYRGEFEDRLKKILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQY 188 (951)
Q Consensus 114 ~~~~~g~~~~~l~~~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~ 188 (951)
+++. .....++.+++.+... ++..|++|||+|.|.. ++++.|+..+|. ..+++|.+|+.++
T Consensus 84 ~~~~--~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~--------~a~naLLk~lEep~~~~~~Il~t~~~~---- 149 (334)
T 1a5t_A 84 GKNT--LGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTD--------AAANALLKTLEEPPAETWFFLATREPE---- 149 (334)
T ss_dssp TCSS--BCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCH--------HHHHHHHHHHTSCCTTEEEEEEESCGG----
T ss_pred cCCC--CCHHHHHHHHHHHhhccccCCcEEEEECchhhcCH--------HHHHHHHHHhcCCCCCeEEEEEeCChH----
Confidence 0111 1223466777766422 3468999999999943 567888999986 4688888888877
Q ss_pred hhcCHHHhhcceEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHH
Q psy14504 189 IEKDAAFERRFQKILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEA 263 (951)
Q Consensus 189 ~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a 263 (951)
.+.++++|||..+.|++|+.++...+++... .++++++..++..+++.. +.+..+++..
T Consensus 150 -~l~~ti~SRc~~~~~~~~~~~~~~~~L~~~~---------~~~~~~~~~l~~~s~G~~------r~a~~~l~~~ 208 (334)
T 1a5t_A 150 -RLLATLRSRCRLHYLAPPPEQYAVTWLSREV---------TMSQDALLAALRLSAGSP------GAALALFQGD 208 (334)
T ss_dssp -GSCHHHHTTSEEEECCCCCHHHHHHHHHHHC---------CCCHHHHHHHHHHTTTCH------HHHHHTTSSH
T ss_pred -hCcHHHhhcceeeeCCCCCHHHHHHHHHHhc---------CCCHHHHHHHHHHcCCCH------HHHHHHhccc
Confidence 8999999999999999999999998887542 568899999999887765 7777776654
No 135
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=7.6e-14 Score=161.99 Aligned_cols=118 Identities=20% Similarity=0.313 Sum_probs=93.6
Q ss_pred ccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhc----CCccEEEcCCChHHHHHHHhhc
Q psy14504 681 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSM----RNYAKIVLGNHEIHLLDVLINI 756 (951)
Q Consensus 681 ~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~----~~~~~~v~GNHe~~~l~~~~~~ 756 (951)
+.+.+|||||++..|.++++.+++.+..+.++|+||++|||+.+.+|+++++++ +.++++|+||||.+++....+.
T Consensus 214 ~~~vigDiHG~~~~l~~~l~~~~~~~~~~~~v~lGD~vdrG~~s~e~~~~l~~l~~~~~~~~~~lrGNHE~~~~~~~~g~ 293 (477)
T 1wao_1 214 KITVCGDTHGQFYDLLNIFELNGLPSETNPYIFNGDFVDRGSFSVEVILTLFGFKLLYPDHFHLLRGNHETDNMNQIYGF 293 (477)
T ss_dssp EEEEECBCTTCHHHHHHHHHHHCCCBTTBCEEEESCCSSSSTTHHHHHHHHHHHHHHSTTTEEEECCTTSSHHHHHHHSH
T ss_pred ceEEEeCCCCCHHHHHHHHHHcCCCCCcCeEEEeccccCCCcchHHHHHHHHHHHhhCCCceEeecCCccHHHHhhhcCh
Confidence 468899999999999999999998666678999999999999999999999886 5678999999999987654321
Q ss_pred ccCCccccHHHhhCCCCHHHHHHHHhcCCceEE-eCCEEEEeccc-CcC
Q psy14504 757 NKKSKLDTFDDILDAPDKKKLVSWLRTQPLAIY-YKKYLMIHAGV-AKQ 803 (951)
Q Consensus 757 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~p~~~~-~~~~~~vHAG~-~p~ 803 (951)
. ..............+.+|++.||++.. .+++++||||+ .|.
T Consensus 294 ~-----~~~~~~~~~~~~~~~~~~~~~lp~~~~~~~~~~~vHgg~~~~~ 337 (477)
T 1wao_1 294 E-----GEVKAKYTAQMYELFSEVFEWLPLAQCINGKVLIMHGGLFSED 337 (477)
T ss_dssp H-----HHHHHHSCTTHHHHHHHHHTTSCSEEEETTTEEECSSCCCSSS
T ss_pred H-----HHHHHHhhHHHHHHHHHHhccCCcEEEEcCcEEEECCCCCccc
Confidence 1 111111223345778999999999864 56899999999 454
No 136
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.47 E-value=4.3e-13 Score=147.52 Aligned_cols=168 Identities=14% Similarity=0.210 Sum_probs=121.9
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCC--CceEEeccccccchhchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNE--ESIIRIDMSEFIEKHSISR 517 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~--~~~~~~~~~~~~~~~~~~~ 517 (951)
..++|++.+++.+...+...+ + ++++|+||||||||++|+++++.+.+.. ..++.+++++.....
T Consensus 21 ~~~~g~~~~~~~l~~~l~~~~--------~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~~~---- 87 (323)
T 1sxj_B 21 SDIVGNKETIDRLQQIAKDGN--------M-PHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRGID---- 87 (323)
T ss_dssp GGCCSCTHHHHHHHHHHHSCC--------C-CCEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCSHH----
T ss_pred HHHHCCHHHHHHHHHHHHcCC--------C-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccChH----
Confidence 568899999999999886422 1 2499999999999999999999874322 235555654321111
Q ss_pred ccCCCCCCccccccchhHHHHH-------hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEec
Q psy14504 518 LIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 590 (951)
Q Consensus 518 l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 590 (951)
..+.+...+. ...+.||||||+|.++...++.|++.+++ ...++++|++|
T Consensus 88 ------------~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~il~~ 144 (323)
T 1sxj_B 88 ------------VVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMEL-----------YSNSTRFAFAC 144 (323)
T ss_dssp ------------HHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHH-----------TTTTEEEEEEE
T ss_pred ------------HHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhc-----------cCCCceEEEEe
Confidence 1111111111 23468999999999999999999999986 33567888888
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 670 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 670 (951)
|... .+.+.+.+|+ .++.|+|++.+++.+++...+.. .+ +.+++++
T Consensus 145 ~~~~------------------------~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~-------~~--~~~~~~~ 190 (323)
T 1sxj_B 145 NQSN------------------------KIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKL-------ED--VKYTNDG 190 (323)
T ss_dssp SCGG------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------HT--CCBCHHH
T ss_pred CChh------------------------hchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHH-------cC--CCCCHHH
Confidence 7522 3568899999 59999999999999996665532 34 5688999
Q ss_pred HHHHHHh
Q psy14504 671 LKKISNI 677 (951)
Q Consensus 671 ~~~L~~~ 677 (951)
++.|+..
T Consensus 191 ~~~l~~~ 197 (323)
T 1sxj_B 191 LEAIIFT 197 (323)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999884
No 137
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.47 E-value=2.1e-13 Score=150.03 Aligned_cols=171 Identities=16% Similarity=0.258 Sum_probs=116.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEcc
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 550 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDE 550 (951)
.+++|+||||||||++|+++++.+...+.+++.+++.++....... + .......+.... ..++||||||
T Consensus 38 ~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~-~--------~~~~~~~~~~~~--~~~~vL~iDE 106 (324)
T 1l8q_A 38 NPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEH-L--------KKGTINEFRNMY--KSVDLLLLDD 106 (324)
T ss_dssp SSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHH-H--------HHTCHHHHHHHH--HTCSEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHH-H--------HcCcHHHHHHHh--cCCCEEEEcC
Confidence 3699999999999999999999986667789999887764321100 0 000011122222 2368999999
Q ss_pred ccccCH--HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhcc
Q psy14504 551 IEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI 628 (951)
Q Consensus 551 id~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~ 628 (951)
++.++. ..++.|+..++.. ...+..+|++++..+..+ ..+.+.|.+|+
T Consensus 107 i~~l~~~~~~~~~l~~~l~~~----------~~~~~~iii~~~~~~~~l--------------------~~l~~~L~sR~ 156 (324)
T 1l8q_A 107 VQFLSGKERTQIEFFHIFNTL----------YLLEKQIILASDRHPQKL--------------------DGVSDRLVSRF 156 (324)
T ss_dssp GGGGTTCHHHHHHHHHHHHHH----------HHTTCEEEEEESSCGGGC--------------------TTSCHHHHHHH
T ss_pred cccccCChHHHHHHHHHHHHH----------HHCCCeEEEEecCChHHH--------------------HHhhhHhhhcc
Confidence 999886 7788888887631 112335666666555432 23678999999
Q ss_pred C--cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 629 D--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 629 ~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
+ .++.|+| +.+++.+|+...+. ..+ +.++++++++|+... .++|.+.+. +++++
T Consensus 157 ~~~~~i~l~~-~~~e~~~il~~~~~-------~~~--~~l~~~~l~~l~~~~----g~~r~l~~~---l~~~~ 212 (324)
T 1l8q_A 157 EGGILVEIEL-DNKTRFKIIKEKLK-------EFN--LELRKEVIDYLLENT----KNVREIEGK---IKLIK 212 (324)
T ss_dssp HTSEEEECCC-CHHHHHHHHHHHHH-------HTT--CCCCHHHHHHHHHHC----SSHHHHHHH---HHHHH
T ss_pred cCceEEEeCC-CHHHHHHHHHHHHH-------hcC--CCCCHHHHHHHHHhC----CCHHHHHHH---HHHHH
Confidence 5 5899999 99999999776653 234 678999999999843 445555555 55554
No 138
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.46 E-value=3.7e-14 Score=151.63 Aligned_cols=162 Identities=22% Similarity=0.344 Sum_probs=111.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhc-------CCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRS-------GLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 512 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~-------~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 512 (951)
+.++|++.+++.+...+..... +...+ .++||+||||||||++|+++|+.+ +.+++.++++++...
T Consensus 11 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~vll~G~~GtGKT~la~~la~~~---~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 11 KDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIP----KGVLLVGPPGTGKTLLAKAVAGEA---HVPFFSMGGSSFIEM 83 (268)
T ss_dssp TTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCC----SCCCCBCSSCSSHHHHHHHHHHHH---TCCCCCCCSCTTTTS
T ss_pred HHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCC----ceEEEECCCCCcHHHHHHHHHHHh---CCCEEEechHHHHHh
Confidence 4578888888888877653221 22111 258999999999999999999998 567888888766542
Q ss_pred hchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHH---------------HHHHHHHHhhcceeecCCCe
Q psy14504 513 HSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSD---------------VFNILLQILDDGRLTDNRGR 577 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~---------------~~~~Ll~~le~g~~~~~~g~ 577 (951)
+.|.. ......++..+....++||||||+|.+... .++.|+..++.-
T Consensus 84 -----~~~~~-----~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~-------- 145 (268)
T 2r62_A 84 -----FVGLG-----ASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGF-------- 145 (268)
T ss_dssp -----CSSSC-----SSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCS--------
T ss_pred -----hcchH-----HHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCc--------
Confidence 11211 112234556666667799999999998754 355566666531
Q ss_pred EeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHH
Q psy14504 578 TINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 578 ~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
.....++++|+|||... .+.+.+++ ||+..+.|++++.++..+++...+
T Consensus 146 ~~~~~~v~vi~ttn~~~------------------------~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~ 196 (268)
T 2r62_A 146 GSENAPVIVLAATNRPE------------------------ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHI 196 (268)
T ss_dssp SCSCSCCEEEECBSCCT------------------------TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHT
T ss_pred ccCCCCEEEEEecCCch------------------------hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHH
Confidence 01224578999999753 24566766 999999999999999999975544
No 139
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.46 E-value=7.3e-13 Score=146.73 Aligned_cols=168 Identities=23% Similarity=0.374 Sum_probs=120.7
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC--ceEEeccccccchhchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE--SIIRIDMSEFIEKHSISR 517 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~--~~~~~~~~~~~~~~~~~~ 517 (951)
..++||+.+++.+...+...+ .++++|+||||||||++|+++|+.+++... .+..++.++..
T Consensus 25 ~~~~g~~~~~~~L~~~i~~g~---------~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~------- 88 (340)
T 1sxj_C 25 DEVYGQNEVITTVRKFVDEGK---------LPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR------- 88 (340)
T ss_dssp GGCCSCHHHHHHHHHHHHTTC---------CCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC-------
T ss_pred HHhcCcHHHHHHHHHHHhcCC---------CceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc-------
Confidence 457899999999998887433 125999999999999999999999865432 23444443211
Q ss_pred ccCCCCCCccccccc-hhHHHHH-----hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecC
Q psy14504 518 LIGAPPGYIGYEEGG-YLTEIVR-----RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSN 591 (951)
Q Consensus 518 l~g~~~~~~g~~~~~-~l~~~~~-----~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn 591 (951)
|.+..+ .+..... ...+.|++|||+|.++...++.|+..+++ ...++.||+++|
T Consensus 89 ---------~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~-----------~~~~~~~il~~n 148 (340)
T 1sxj_C 89 ---------GIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIER-----------YTKNTRFCVLAN 148 (340)
T ss_dssp ---------SHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHH-----------TTTTEEEEEEES
T ss_pred ---------cHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhc-----------CCCCeEEEEEec
Confidence 111111 1111111 12368999999999999999999999997 345678888888
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 671 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 671 (951)
... .+.|.+.+|+ ..+.|.+++.+++.+++...+ ...+ +.++++++
T Consensus 149 ~~~------------------------~i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~-------~~~~--~~i~~~~~ 194 (340)
T 1sxj_C 149 YAH------------------------KLTPALLSQC-TRFRFQPLPQEAIERRIANVL-------VHEK--LKLSPNAE 194 (340)
T ss_dssp CGG------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHH-------HTTT--CCBCHHHH
T ss_pred Ccc------------------------ccchhHHhhc-eeEeccCCCHHHHHHHHHHHH-------HHcC--CCCCHHHH
Confidence 532 3578899999 589999999999988855444 3334 56889999
Q ss_pred HHHHHh
Q psy14504 672 KKISNI 677 (951)
Q Consensus 672 ~~L~~~ 677 (951)
+.++..
T Consensus 195 ~~i~~~ 200 (340)
T 1sxj_C 195 KALIEL 200 (340)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999874
No 140
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.46 E-value=4.8e-13 Score=164.15 Aligned_cols=178 Identities=17% Similarity=0.280 Sum_probs=126.0
Q ss_pred CCccccHHHHHHHHHHHHcCC---------CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14504 44 DPVIGRDDEIRRAIQVLQRRS---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 114 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~~~~---------~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (951)
+.++|++..++.+...+.... .+++||+||||||||++|+++|+.+... +.+++.++++.+...
T Consensus 491 ~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~-------~~~~i~i~~s~~~~~ 563 (758)
T 3pxi_A 491 SRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGD-------EESMIRIDMSEYMEK 563 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSC-------TTCEEEEEGGGGCSS
T ss_pred CcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CcceEEEechhcccc
Confidence 468999999988887766321 1269999999999999999999998543 567899999887632
Q ss_pred ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEEEEeec
Q psy14504 115 TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCIGATT 181 (951)
Q Consensus 115 ~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~vI~at~ 181 (951)
. ... ...+...+. ...++||||||++.+. .++++.|+..++.+ ++++|+|||
T Consensus 564 ~--~~~----~~~l~~~~~-~~~~~vl~lDEi~~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn 628 (758)
T 3pxi_A 564 H--STS----GGQLTEKVR-RKPYSVVLLDAIEKAH--------PDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSN 628 (758)
T ss_dssp C--CCC-------CHHHHH-HCSSSEEEEECGGGSC--------HHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEES
T ss_pred c--ccc----cchhhHHHH-hCCCeEEEEeCccccC--------HHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCC
Confidence 2 221 111222222 3346799999999883 47788888888653 468999999
Q ss_pred chH-----HHH--hhhcCHHHhhcce-EEEeeCCCHHHHHHHHHHHHHhhhh-----hcCCCCChHHHHHHHHHh
Q psy14504 182 LNE-----YRQ--YIEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEV-----HHGVEITDPAIVAASELS 243 (951)
Q Consensus 182 ~~~-----~~~--~~~~~~~l~~Rf~-~i~~~~p~~~er~~il~~~~~~~~~-----~~~~~i~~~~l~~~~~~s 243 (951)
... ... .-.+.|.|.+||+ .|.|++|+.+++..|++.++..+.. ...+.+++++++.++..+
T Consensus 629 ~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~ 703 (758)
T 3pxi_A 629 VGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEG 703 (758)
T ss_dssp SSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGG
T ss_pred CChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhC
Confidence 421 100 1126899999996 5999999999999999877765432 234678999999988764
No 141
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.45 E-value=1e-12 Score=161.59 Aligned_cols=198 Identities=16% Similarity=0.240 Sum_probs=137.1
Q ss_pred CCccccHHHHHHHHHHHHc---------CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14504 44 DPVIGRDDEIRRAIQVLQR---------RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 114 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~~---------~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (951)
+.++|++..++.+...+.. +...++||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l----------~~~~~~i~~s~~~~~ 527 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL----------GIELLRFDMSEYMER 527 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHH----------TCEEEEEEGGGCSSS
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHh----------cCCEEEEechhhcch
Confidence 4689999999888776553 122379999999999999999999998 678999998776421
Q ss_pred ---c-------cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC------------
Q psy14504 115 ---T-------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 172 (951)
Q Consensus 115 ---~-------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~------------ 172 (951)
+ .|.|..+. ..+...+. ...++||||||++.+. .++++.|+..++.+
T Consensus 528 ~~~~~l~g~~~g~~g~~~~--~~l~~~~~-~~~~~vl~lDEi~~~~--------~~~~~~Ll~~le~~~~~~~~g~~~~~ 596 (758)
T 1r6b_X 528 HTVSRLIGAPPGYVGFDQG--GLLTDAVI-KHPHAVLLLDEIEKAH--------PDVFNILLQVMDNGTLTDNNGRKADF 596 (758)
T ss_dssp SCCSSSCCCCSCSHHHHHT--THHHHHHH-HCSSEEEEEETGGGSC--------HHHHHHHHHHHHHSEEEETTTEEEEC
T ss_pred hhHhhhcCCCCCCcCcccc--chHHHHHH-hCCCcEEEEeCccccC--------HHHHHHHHHHhcCcEEEcCCCCEEec
Confidence 1 13332111 12233333 3447899999999884 46888899998754
Q ss_pred -cEEEEEeecchHHH------------------H--hhhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhh-----
Q psy14504 173 -ELHCIGATTLNEYR------------------Q--YIEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEV----- 225 (951)
Q Consensus 173 -~i~vI~at~~~~~~------------------~--~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~----- 225 (951)
++++|+|||..... . .-.++|+|++||+. |.|++|+.+++..|++.++.++..
T Consensus 597 ~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~ 676 (758)
T 1r6b_X 597 RNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQK 676 (758)
T ss_dssp TTEEEEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHC
Confidence 36699999873200 0 01568999999964 999999999999999887765422
Q ss_pred hcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q psy14504 226 HHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 226 ~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 265 (951)
...+.++++++..++..+.. ..+-.+.+.++++.++.
T Consensus 677 ~~~~~~~~~a~~~l~~~~~~---~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 677 GVSLEVSQEARNWLAEKGYD---RAMGARPMARVIQDNLK 713 (758)
T ss_dssp TEEEEECHHHHHHHHHHHCB---TTTBTTTHHHHHHHHHT
T ss_pred CcEEEeCHHHHHHHHHhCCC---cCCCchHHHHHHHHHHH
Confidence 11356899999988876421 12224556666666554
No 142
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.45 E-value=2.2e-12 Score=144.90 Aligned_cols=184 Identities=20% Similarity=0.273 Sum_probs=122.8
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchh---
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSIS--- 516 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~--- 516 (951)
..++|++.+++.+...+...+. .+.++|+||||||||++|+++++.+..... .....|..........
T Consensus 16 ~~~vg~~~~~~~L~~~l~~~~~--------~~~~ll~G~~G~GKT~la~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~~ 86 (373)
T 1jr3_A 16 ADVVGQEHVLTALANGLSLGRI--------HHAYLFSGTRGVGKTSIARLLAKGLNCETG-ITATPCGVCDNCREIEQGR 86 (373)
T ss_dssp TTSCSCHHHHHHHHHHHHHTCC--------CSEEEEESCTTSSHHHHHHHHHHHHSCTTC-SCSSCCSSSHHHHHHHTSC
T ss_pred hhccCcHHHHHHHHHHHHhCCC--------CeEEEEECCCCCCHHHHHHHHHHHhCCCCC-CCCCCCcccHHHHHHhccC
Confidence 4589999999999999875331 126899999999999999999998853221 1111111111000000
Q ss_pred --cccC-CCCCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEe
Q psy14504 517 --RLIG-APPGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 589 (951)
Q Consensus 517 --~l~g-~~~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 589 (951)
.++. ...+..+.+..+.+...+.. ..+.||||||+|.+++..++.|++.+++ ...++++|++
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~-----------~~~~~~~Il~ 155 (373)
T 1jr3_A 87 FVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFLLA 155 (373)
T ss_dssp CSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHS-----------CCSSEEEEEE
T ss_pred CCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhc-----------CCCceEEEEE
Confidence 0000 00011122222233333332 3368999999999999999999999986 4457888888
Q ss_pred cCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchH
Q psy14504 590 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKA 669 (951)
Q Consensus 590 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~ 669 (951)
|+... .+.+.+.+|+ ..+.|.+++.+++.+++...+.+ .+ +.++++
T Consensus 156 ~~~~~------------------------~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~-------~~--~~~~~~ 201 (373)
T 1jr3_A 156 TTDPQ------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-------EH--IAHEPR 201 (373)
T ss_dssp ESCGG------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------HT--CCBCHH
T ss_pred eCChH------------------------hCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHH-------cC--CCCCHH
Confidence 87522 3567888998 79999999999999986665533 34 568899
Q ss_pred HHHHHHHh
Q psy14504 670 ALKKISNI 677 (951)
Q Consensus 670 ~~~~L~~~ 677 (951)
+++.|+..
T Consensus 202 a~~~l~~~ 209 (373)
T 1jr3_A 202 ALQLLARA 209 (373)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999884
No 143
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.45 E-value=1.2e-12 Score=144.33 Aligned_cols=177 Identities=11% Similarity=0.087 Sum_probs=116.4
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCce--EEecccc---ccch--hch
Q psy14504 443 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESI--IRIDMSE---FIEK--HSI 515 (951)
Q Consensus 443 ~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~--~~~~~~~---~~~~--~~~ 515 (951)
-+|+++.+.+...+...+. .+.+||+||||||||++|+++|+.+.+....- .+..|.. +... .+.
T Consensus 5 pw~~~~~~~l~~~i~~~~~--------~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~ 76 (334)
T 1a5t_A 5 PWLRPDFEKLVASYQAGRG--------HHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDY 76 (334)
T ss_dssp GGGHHHHHHHHHHHHTTCC--------CSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTE
T ss_pred CchHHHHHHHHHHHHcCCc--------ceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 3667778888888764431 23699999999999999999999986433110 0001100 0000 000
Q ss_pred hcccCCC-CCCccccccchhHHHHHh----CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEec
Q psy14504 516 SRLIGAP-PGYIGYEEGGYLTEIVRR----KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 590 (951)
Q Consensus 516 ~~l~g~~-~~~~g~~~~~~l~~~~~~----~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 590 (951)
..+.+.. ...++.++.+.+.+.+.. ..+.|++|||+|.++.+.+|.|++.||+ +..+++||++|
T Consensus 77 ~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEe-----------p~~~~~~Il~t 145 (334)
T 1a5t_A 77 YTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEE-----------PPAETWFFLAT 145 (334)
T ss_dssp EEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTS-----------CCTTEEEEEEE
T ss_pred EEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcC-----------CCCCeEEEEEe
Confidence 0010100 112222222333333332 3479999999999999999999999997 55678899998
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 670 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 670 (951)
|... .+.|.+.+|+ ..+.|++++.+++.+++.... .+++++
T Consensus 146 ~~~~------------------------~l~~ti~SRc-~~~~~~~~~~~~~~~~L~~~~--------------~~~~~~ 186 (334)
T 1a5t_A 146 REPE------------------------RLLATLRSRC-RLHYLAPPPEQYAVTWLSREV--------------TMSQDA 186 (334)
T ss_dssp SCGG------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHC--------------CCCHHH
T ss_pred CChH------------------------hCcHHHhhcc-eeeeCCCCCHHHHHHHHHHhc--------------CCCHHH
Confidence 8632 3678999999 699999999999998854332 467888
Q ss_pred HHHHHHh
Q psy14504 671 LKKISNI 677 (951)
Q Consensus 671 ~~~L~~~ 677 (951)
++.++..
T Consensus 187 ~~~l~~~ 193 (334)
T 1a5t_A 187 LLAALRL 193 (334)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8888774
No 144
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.44 E-value=2e-13 Score=156.41 Aligned_cols=159 Identities=23% Similarity=0.410 Sum_probs=110.1
Q ss_pred ccCCChHHHHHHHHHHHHhhhcC--CCC--CCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSG--LSD--AKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI 515 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~--~~~--~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~ 515 (951)
+.|+|+++++..+.+.+...... +.. -..|. .++|+||||||||++|++||..+ +.+++.++++++...
T Consensus 31 ~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~-GvLL~GppGtGKTtLaraIa~~~---~~~~i~i~g~~~~~~--- 103 (499)
T 2dhr_A 31 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM--- 103 (499)
T ss_dssp TSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCS-EEEEECSSSSSHHHHHHHHHHHT---TCCEEEEEGGGGTSS---
T ss_pred HHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCc-eEEEECCCCCCHHHHHHHHHHHh---CCCEEEEehhHHHHh---
Confidence 56889999999888877654311 000 11122 59999999999999999999988 578999998876542
Q ss_pred hcccCCCCCCccccccchhHHHHH---hCCCeEEEEccccccCH--------------HHHHHHHHHhhcceeecCCCeE
Q psy14504 516 SRLIGAPPGYIGYEEGGYLTEIVR---RKPYSLILLDEIEKANS--------------DVFNILLQILDDGRLTDNRGRT 578 (951)
Q Consensus 516 ~~l~g~~~~~~g~~~~~~l~~~~~---~~~~~vl~iDEid~~~~--------------~~~~~Ll~~le~g~~~~~~g~~ 578 (951)
++|.... .+...+. ...++|+||||||.+.. ..++.|+..|+.+.
T Consensus 104 ---------~~g~~~~-~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~-------- 165 (499)
T 2dhr_A 104 ---------FVGVGAA-RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE-------- 165 (499)
T ss_dssp ---------CTTHHHH-HHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCC--------
T ss_pred ---------hhhhHHH-HHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccc--------
Confidence 2332211 1222232 23469999999987642 45677787777532
Q ss_pred eecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHH
Q psy14504 579 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANI 648 (951)
Q Consensus 579 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~ 648 (951)
....+++|++||.+. .++|++++ ||+..|.+++++.++..+|++.
T Consensus 166 -~~~~viviAatn~p~------------------------~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~ 212 (499)
T 2dhr_A 166 -KDTAIVVMAATNRPD------------------------ILDPALLRPGRFDRQIAIDAPDVKGREQILRI 212 (499)
T ss_dssp -SSCCCEEEECCSCGG------------------------GSCTTTSSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred -cCccEEEEEecCChh------------------------hcCcccccccccceEEecCCCCHHHHHHHHHH
Confidence 224567888888643 14566665 8999999999999999998654
No 145
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.44 E-value=5.5e-14 Score=166.00 Aligned_cols=197 Identities=13% Similarity=0.112 Sum_probs=117.7
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhhhc-CCC-CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEE----e
Q psy14504 431 LLNIENLLCKRVVGQDEAISAVSNAIRRSRS-GLS-DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIR----I 504 (951)
Q Consensus 431 l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~-~~~-~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~----~ 504 (951)
+..+.+.+...++||+.+++.+..++..... ... ...++..++||+||||||||++|+++|+.+. ..+.. .
T Consensus 286 ~~~l~~~l~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~---r~~~~~~~~~ 362 (595)
T 3f9v_A 286 RDRIISSIAPSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAP---RAVYTTGKGS 362 (595)
T ss_dssp GGTHHHHTSSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCS---CEECCCTTCS
T ss_pred HHHHHHhhcchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCC---CceecCCCcc
Confidence 3456677889999999988777554432100 000 1112223799999999999999999998872 22211 1
Q ss_pred ccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeec-CCCeEee-cC
Q psy14504 505 DMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTD-NRGRTIN-FR 582 (951)
Q Consensus 505 ~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~-~~g~~~~-~~ 582 (951)
.+.++........ ..|.. ......+..+.++|+|||||+++++..++.|+++|+++.++. ..|.... ..
T Consensus 363 ~~~~l~~~~~~~~-------~~g~~--~~~~G~l~~A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~ 433 (595)
T 3f9v_A 363 TAAGLTAAVVREK-------GTGEY--YLEAGALVLADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKLNA 433 (595)
T ss_dssp TTTTSEEECSSGG-------GTSSC--SEEECHHHHHSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEECC
T ss_pred ccccccceeeecc-------ccccc--cccCCeeEecCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEecC
Confidence 1222211100000 01110 011123344567899999999999999999999999998874 3344433 36
Q ss_pred CeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHH
Q psy14504 583 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 583 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
++.+|+|||...........-. -.-.++++|++|||.++.+.++..++...|+...+
T Consensus 434 ~~~vIaatNp~~G~~~~~~~~~-----------~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il 490 (595)
T 3f9v_A 434 RAAVIAAGNPKFGRYISERPVS-----------DNINLPPTILSRFDLIFILKDQPGEQDRELANYIL 490 (595)
T ss_dssp CCEEEEEECCTTCCSCTTSCSC-----------TTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHH
T ss_pred ceEEEEEcCCcCCccCcccCch-----------hccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHH
Confidence 7899999997532111000000 00157899999999877777766555445554443
No 146
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=9.9e-13 Score=148.43 Aligned_cols=193 Identities=21% Similarity=0.243 Sum_probs=133.2
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC--------CCceEEecccccc-
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN--------EESIIRIDMSEFI- 510 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~--------~~~~~~~~~~~~~- 510 (951)
+.++|++..++.+...+.....+ .+..+++|+||||||||++|+++++.+... +..++.++|....
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~~-----~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 94 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVKN-----EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGG 94 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHTT-----CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCS
T ss_pred CCCCChHHHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCC
Confidence 67899999999999988775433 112379999999999999999999987433 5678888887654
Q ss_pred chhc-----hhcccCCCCCCccccccchh---HHHHHhCCCeEEEEccccccCHHH-HHH-HHHHhhcceeecCCCeEee
Q psy14504 511 EKHS-----ISRLIGAPPGYIGYEEGGYL---TEIVRRKPYSLILLDEIEKANSDV-FNI-LLQILDDGRLTDNRGRTIN 580 (951)
Q Consensus 511 ~~~~-----~~~l~g~~~~~~g~~~~~~l---~~~~~~~~~~vl~iDEid~~~~~~-~~~-Ll~~le~g~~~~~~g~~~~ 580 (951)
.... ...+.|...+..|......+ ...+...+ +||||||+|.+.... ++. +..+++. .
T Consensus 95 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~-~vlilDEi~~l~~~~~~~~~l~~l~~~-----------~ 162 (384)
T 2qby_B 95 TPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIR-AIIYLDEVDTLVKRRGGDIVLYQLLRS-----------D 162 (384)
T ss_dssp CHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSC-EEEEEETTHHHHHSTTSHHHHHHHHTS-----------S
T ss_pred CHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCC-CEEEEECHHHhccCCCCceeHHHHhcC-----------C
Confidence 3211 23333555555554433222 22233333 499999999987642 555 5555553 1
Q ss_pred cCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhc
Q psy14504 581 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKM 660 (951)
Q Consensus 581 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~ 660 (951)
.++.+|++||.... ...+.+.+.+|+...+.|+|++.+++.+++...+.. .
T Consensus 163 -~~~~iI~~t~~~~~---------------------~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~-------~ 213 (384)
T 2qby_B 163 -ANISVIMISNDINV---------------------RDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEY-------G 213 (384)
T ss_dssp -SCEEEEEECSSTTT---------------------TTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHH-------T
T ss_pred -cceEEEEEECCCch---------------------HhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHh-------h
Confidence 56789999986431 124678888998779999999999999997766542 1
Q ss_pred CCccccchHHHHHHHHhc
Q psy14504 661 NMDLKISKAALKKISNIG 678 (951)
Q Consensus 661 ~~~l~~~~~~~~~L~~~~ 678 (951)
--...+++++++.+++..
T Consensus 214 ~~~~~~~~~~~~~i~~~~ 231 (384)
T 2qby_B 214 LIKGTYDDEILSYIAAIS 231 (384)
T ss_dssp SCTTSCCSHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHH
Confidence 112568899999998854
No 147
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.43 E-value=5.6e-12 Score=132.18 Aligned_cols=182 Identities=19% Similarity=0.275 Sum_probs=118.8
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhch----
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSI---- 515 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~---- 515 (951)
..++|++.+++.+...+..... .+.++|+||||||||++|+++++.+.... .+....+.........
T Consensus 23 ~~~~g~~~~~~~l~~~l~~~~~--------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 93 (250)
T 1njg_A 23 ADVVGQEHVLTALANGLSLGRI--------HHAYLFSGTRGVGKTSIARLLAKGLNCET-GITATPCGVCDNCREIEQGR 93 (250)
T ss_dssp GGCCSCHHHHHHHHHHHHHTCC--------CSEEEEECSTTSCHHHHHHHHHHHHHCTT-CSCSSCCSCSHHHHHHHTTC
T ss_pred HHHhCcHHHHHHHHHHHHcCCC--------CeEEEEECCCCCCHHHHHHHHHHHhcCCC-CCCCCCCcccHHHHHHhccC
Confidence 4689999999999998875331 12689999999999999999999884322 1111111110000000
Q ss_pred -hcccCCCCCCccccccchhHHHHH-------hCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEE
Q psy14504 516 -SRLIGAPPGYIGYEEGGYLTEIVR-------RKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIV 587 (951)
Q Consensus 516 -~~l~g~~~~~~g~~~~~~l~~~~~-------~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI 587 (951)
..++..... +......+...+. ...+.+|||||++.+++..++.|+..+++ ...++++|
T Consensus 94 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~-----------~~~~~~~i 160 (250)
T 1njg_A 94 FVDLIEIDAA--SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEE-----------PPEHVKFL 160 (250)
T ss_dssp CSSEEEEETT--CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHS-----------CCTTEEEE
T ss_pred CcceEEecCc--ccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhc-----------CCCceEEE
Confidence 000000000 0001112222222 22468999999999999999999999986 23567888
Q ss_pred EecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccc
Q psy14504 588 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKIS 667 (951)
Q Consensus 588 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~ 667 (951)
++||... .+.+.+.+|+ ..+.|+|++.+++.+++...+.. .+ +.++
T Consensus 161 ~~t~~~~------------------------~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~-------~~--~~~~ 206 (250)
T 1njg_A 161 LATTDPQ------------------------KLPVTILSRC-LQFHLKALDVEQIRHQLEHILNE-------EH--IAHE 206 (250)
T ss_dssp EEESCGG------------------------GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHH-------TT--CCBC
T ss_pred EEeCChH------------------------hCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHh-------cC--CCCC
Confidence 8888532 3467788887 69999999999999996665533 33 5678
Q ss_pred hHHHHHHHHh
Q psy14504 668 KAALKKISNI 677 (951)
Q Consensus 668 ~~~~~~L~~~ 677 (951)
+++++.|++.
T Consensus 207 ~~~~~~l~~~ 216 (250)
T 1njg_A 207 PRALQLLARA 216 (250)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8999988874
No 148
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.42 E-value=3.6e-12 Score=144.06 Aligned_cols=199 Identities=17% Similarity=0.210 Sum_probs=136.9
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC-CCceEEeccccccchhch---
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDMSEFIEKHSI--- 515 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~~~~~~~~~~--- 515 (951)
..++|++..++.+...+.....+- .+ ..++++|+||||||||++++++++.+... +..++.++|.........
T Consensus 17 ~~l~gr~~~~~~l~~~l~~~~~~~-~~--~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 93 (389)
T 1fnn_A 17 KRLPHREQQLQQLDILLGNWLRNP-GH--HYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGE 93 (389)
T ss_dssp SCCTTCHHHHHHHHHHHHHHHHST-TS--SCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcCC-CC--CCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHH
Confidence 568899999999999887754331 11 11269999999999999999999998655 467888888765543211
Q ss_pred -hcccCCCCCCcccccc---chhHHHHHh-CCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeec---CCeEEE
Q psy14504 516 -SRLIGAPPGYIGYEEG---GYLTEIVRR-KPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINF---RNTIIV 587 (951)
Q Consensus 516 -~~l~g~~~~~~g~~~~---~~l~~~~~~-~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~---~~~iiI 587 (951)
...+|...+..|.... ..+...+.. ..+.||||||++.+++..++.|+.++++. .. .++.+|
T Consensus 94 l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~L~~~~~~~----------~~~~~~~~~iI 163 (389)
T 1fnn_A 94 IARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNLAPDILSTFIRLGQEA----------DKLGAFRIALV 163 (389)
T ss_dssp HHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGSCHHHHHHHHHHTTCH----------HHHSSCCEEEE
T ss_pred HHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECccccchHHHHHHHHHHHhC----------CCCCcCCEEEE
Confidence 1223433222222211 122223332 44689999999999999999999999751 11 367788
Q ss_pred EecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCChhhHHHHHHHHHHHHHHHHHhcCCcccc
Q psy14504 588 MTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKI 666 (951)
Q Consensus 588 ~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~ 666 (951)
++||... +...+.+.+.+|+.. .+.|+|++.+++.+++...+... .....+
T Consensus 164 ~~~~~~~---------------------~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~-------~~~~~~ 215 (389)
T 1fnn_A 164 IVGHNDA---------------------VLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAG-------LAEGSY 215 (389)
T ss_dssp EEESSTH---------------------HHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHH-------BCTTSS
T ss_pred EEECCch---------------------HHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhh-------cCCCCC
Confidence 8888642 123467888899865 89999999999999977655431 112468
Q ss_pred chHHHHHHHHhcc
Q psy14504 667 SKAALKKISNIGF 679 (951)
Q Consensus 667 ~~~~~~~L~~~~~ 679 (951)
++++++.++...+
T Consensus 216 ~~~~~~~l~~~~~ 228 (389)
T 1fnn_A 216 SEDILQMIADITG 228 (389)
T ss_dssp CHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHh
Confidence 9999999988553
No 149
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=1.2e-12 Score=141.42 Aligned_cols=145 Identities=14% Similarity=0.243 Sum_probs=105.4
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhc--c-CCCceEEeccccccchhchhcccC
Q psy14504 444 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIF--N-NEESIIRIDMSEFIEKHSISRLIG 520 (951)
Q Consensus 444 Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~--~-~~~~~~~~~~~~~~~~~~~~~l~g 520 (951)
||+++++.+...++..+ .+++||+||||||||++|+++|+.+. . ....+..++.+.
T Consensus 1 g~~~~~~~L~~~i~~~~---------~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~------------ 59 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE---------GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG------------ 59 (305)
T ss_dssp ---CHHHHHHHHHHTCS---------SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS------------
T ss_pred ChHHHHHHHHHHHHCCC---------CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc------------
Confidence 78888999999887433 24799999999999999999998641 1 123444444321
Q ss_pred CCCCCccccccchhHHHHHhC----CCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchh
Q psy14504 521 APPGYIGYEEGGYLTEIVRRK----PYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDK 596 (951)
Q Consensus 521 ~~~~~~g~~~~~~l~~~~~~~----~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~ 596 (951)
..+|.++.+.+.+.+... ...|+||||+|.++...+|+|++.||+ +..+++||++|+...
T Consensus 60 ---~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEe-----------p~~~t~fIl~t~~~~-- 123 (305)
T 2gno_A 60 ---ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEE-----------PPEYAVIVLNTRRWH-- 123 (305)
T ss_dssp ---SCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHS-----------CCTTEEEEEEESCGG--
T ss_pred ---CCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhC-----------CCCCeEEEEEECChH--
Confidence 022322333444444433 358999999999999999999999998 667889999987532
Q ss_pred hhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHH
Q psy14504 597 IKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 597 ~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
.+.|.+.+| ++.|.|++.+++.+.+...+
T Consensus 124 ----------------------kl~~tI~SR---~~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 124 ----------------------YLLPTIKSR---VFRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp ----------------------GSCHHHHTT---SEEEECCCCHHHHHHHHHHH
T ss_pred ----------------------hChHHHHce---eEeCCCCCHHHHHHHHHHHh
Confidence 467899999 89999999999999866554
No 150
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.42 E-value=1.6e-12 Score=140.28 Aligned_cols=147 Identities=12% Similarity=0.066 Sum_probs=110.0
Q ss_pred ccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHH
Q psy14504 48 GRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKK 127 (951)
Q Consensus 48 G~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~ 127 (951)
|+++.++.+...+..+..+++||+||||+|||++|+++|+.+... .. ....++.++.+. .. .....++.
T Consensus 1 g~~~~~~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~~~~~~--~~--~~~d~~~l~~~~-----~~--~~id~ir~ 69 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSEGISILINGEDLSYPREVSLELPEYVEKF--PP--KASDVLEIDPEG-----EN--IGIDDIRT 69 (305)
T ss_dssp ---CHHHHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHHHHHTS--CC--CTTTEEEECCSS-----SC--BCHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHHhCchh--hc--cCCCEEEEcCCc-----CC--CCHHHHHH
Confidence 678888999998887777789999999999999999999864211 11 234666666431 11 12234677
Q ss_pred HHHHHHhc---CCCeEEEEecccccccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchHHHHhhhcCHHHhhcceEE
Q psy14504 128 ILKEISNN---QKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNEYRQYIEKDAAFERRFQKI 202 (951)
Q Consensus 128 ~~~~a~~~---~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~i 202 (951)
+++.+... ++..|+||||+|.|.. ++++.|+..||. ..+++|.+|+.+. .+.|++++| .+
T Consensus 70 li~~~~~~p~~~~~kvviIdead~lt~--------~a~naLLk~LEep~~~t~fIl~t~~~~-----kl~~tI~SR--~~ 134 (305)
T 2gno_A 70 IKDFLNYSPELYTRKYVIVHDCERMTQ--------QAANAFLKALEEPPEYAVIVLNTRRWH-----YLLPTIKSR--VF 134 (305)
T ss_dssp HHHHHTSCCSSSSSEEEEETTGGGBCH--------HHHHHTHHHHHSCCTTEEEEEEESCGG-----GSCHHHHTT--SE
T ss_pred HHHHHhhccccCCceEEEeccHHHhCH--------HHHHHHHHHHhCCCCCeEEEEEECChH-----hChHHHHce--eE
Confidence 77777522 2357999999999953 678889999986 4788888888876 899999999 89
Q ss_pred EeeCCCHHHHHHHHHHHH
Q psy14504 203 LVEEPDIEETISILRGLQ 220 (951)
Q Consensus 203 ~~~~p~~~er~~il~~~~ 220 (951)
+|++|+.++....++..+
T Consensus 135 ~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEECCCCHHHHHHHHHHH
T ss_pred eCCCCCHHHHHHHHHHHh
Confidence 999999999999987665
No 151
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.41 E-value=1.7e-12 Score=138.43 Aligned_cols=159 Identities=20% Similarity=0.300 Sum_probs=107.4
Q ss_pred ccCCChHHHHHHHHHHHHh--------hhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRR--------SRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~--------~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
+.|.|.+++++.+...+.. ...++..| . .++|+||||||||++|++||..+ +..++.+++.++..
T Consensus 10 ~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~---~-GvlL~Gp~GtGKTtLakala~~~---~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 10 ADIGALEDIREELTMAILAPVRNPDQFKALGLVTP---A-GVLLAGPPGCGKTLLAKAVANES---GLNFISVKGPELLN 82 (274)
T ss_dssp --CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCC---S-EEEEESSTTSCHHHHHHHHHHHT---TCEEEEEETTTTCS
T ss_pred HHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCC---C-eEEEECCCCCcHHHHHHHHHHHc---CCCEEEEEcHHHHh
Confidence 3455666666666554321 12233322 2 49999999999999999999987 45688888776543
Q ss_pred hhchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccC-----------HHHHHHHHHHhhcceeecCCCeE
Q psy14504 512 KHSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKAN-----------SDVFNILLQILDDGRLTDNRGRT 578 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~-----------~~~~~~Ll~~le~g~~~~~~g~~ 578 (951)
. |.|..+. +.++...+...++++|+||++.+. ....+.++..|+.|.
T Consensus 83 ~------------~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~-------- 142 (274)
T 2x8a_A 83 M------------YVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLE-------- 142 (274)
T ss_dssp S------------TTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCC--------
T ss_pred h------------hhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhccc--------
Confidence 2 3332221 334444455677999999999753 235677888887653
Q ss_pred eecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHH
Q psy14504 579 INFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQL 650 (951)
Q Consensus 579 ~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l 650 (951)
..+.++++++||.+. .++|+++. |||..|.++.++.++..+|++..+
T Consensus 143 -~~~~~i~ia~tn~p~------------------------~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 143 -ARQQVFIMAATNRPD------------------------IIDPAILRPGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp -STTCEEEEEEESCGG------------------------GSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred -ccCCEEEEeecCChh------------------------hCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 234567778888643 24677775 999999999999999999966544
No 152
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=1.1e-12 Score=146.45 Aligned_cols=181 Identities=16% Similarity=0.273 Sum_probs=115.1
Q ss_pred ccCCChHHHHHHHHHHH-HhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh-----
Q psy14504 440 KRVVGQDEAISAVSNAI-RRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH----- 513 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~-~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~----- 513 (951)
..++||+.+++.+..++ ... + .++++|+||+|||||++++++++.+++....-+.++...+....
T Consensus 14 ~~~vg~~~~~~~l~~~~~~~~--------~-~~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~ 84 (354)
T 1sxj_E 14 NALSHNEELTNFLKSLSDQPR--------D-LPHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLE 84 (354)
T ss_dssp GGCCSCHHHHHHHHTTTTCTT--------C-CCCEEEECSTTSSHHHHHHTHHHHHSCTTCCC-----------------
T ss_pred HHhcCCHHHHHHHHHHHhhCC--------C-CCeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccce
Confidence 45889999988877765 321 1 12499999999999999999999765433221222211111000
Q ss_pred -------chhcccCCCCCCccccccchhHHHH----H-------------hCCCeEEEEccccccCHHHHHHHHHHhhcc
Q psy14504 514 -------SISRLIGAPPGYIGYEEGGYLTEIV----R-------------RKPYSLILLDEIEKANSDVFNILLQILDDG 569 (951)
Q Consensus 514 -------~~~~l~g~~~~~~g~~~~~~l~~~~----~-------------~~~~~vl~iDEid~~~~~~~~~Ll~~le~g 569 (951)
..-.+... ..+......+.+.+ . ...+.|++|||++.+++..++.|++.|++
T Consensus 85 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~le~- 160 (354)
T 1sxj_E 85 LNVVSSPYHLEITPS---DMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEK- 160 (354)
T ss_dssp -CCEECSSEEEECCC-------CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHHHH-
T ss_pred eeeecccceEEecHh---hcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHHHh-
Confidence 00000000 00111100111211 1 22567999999999999999999999996
Q ss_pred eeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHH
Q psy14504 570 RLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQ 649 (951)
Q Consensus 570 ~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~ 649 (951)
...++.||++||... .+.+.+.+|+ ..+.|+|++.+++.+++...
T Consensus 161 ----------~~~~~~~Il~t~~~~------------------------~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~ 205 (354)
T 1sxj_E 161 ----------YSKNIRLIMVCDSMS------------------------PIIAPIKSQC-LLIRCPAPSDSEISTILSDV 205 (354)
T ss_dssp ----------STTTEEEEEEESCSC------------------------SSCHHHHTTS-EEEECCCCCHHHHHHHHHHH
T ss_pred ----------hcCCCEEEEEeCCHH------------------------HHHHHHHhhc-eEEecCCcCHHHHHHHHHHH
Confidence 335678888888643 2467899999 79999999999999986655
Q ss_pred HHHHHHHHHhcCCccccc-hHHHHHHHHh
Q psy14504 650 LNILKNKLLKMNMDLKIS-KAALKKISNI 677 (951)
Q Consensus 650 l~~~~~~~~~~~~~l~~~-~~~~~~L~~~ 677 (951)
+. ..+ +.++ +++++.|+..
T Consensus 206 ~~-------~~~--~~~~~~~~l~~i~~~ 225 (354)
T 1sxj_E 206 VT-------NER--IQLETKDILKRIAQA 225 (354)
T ss_dssp HH-------HHT--CEECCSHHHHHHHHH
T ss_pred HH-------HcC--CCCCcHHHHHHHHHH
Confidence 53 234 5688 9999999874
No 153
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=99.40 E-value=1.4e-10 Score=155.33 Aligned_cols=134 Identities=14% Similarity=0.183 Sum_probs=94.5
Q ss_pred HHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHH
Q psy14504 53 IRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEI 132 (951)
Q Consensus 53 i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a 132 (951)
...+.+.+... .+..+.||+|||||++++.+|+.+ +..++.++|+.-. ....+..+|..+
T Consensus 594 y~tl~~Al~~~--~gg~~~GPaGtGKTet~k~La~~l----------gr~~~vfnC~~~~--------d~~~~g~i~~G~ 653 (3245)
T 3vkg_A 594 YLTLTQALESR--MGGNPFGPAGTGKTETVKALGSQL----------GRFVLVFCCDEGF--------DLQAMSRIFVGL 653 (3245)
T ss_dssp HHHHHHHHHTT--CEEEEECSTTSSHHHHHHHHHHHT----------TCCEEEEECSSCC--------CHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHh----------CCeEEEEeCCCCC--------CHHHHHHHHhhH
Confidence 34444444433 455789999999999999999999 8899999885532 112466677776
Q ss_pred HhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhc----------------c-------CCcEEEEEeecchHHHHhh
Q psy14504 133 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----------------S-------RGELHCIGATTLNEYRQYI 189 (951)
Q Consensus 133 ~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l----------------e-------~~~i~vI~at~~~~~~~~~ 189 (951)
... ++..++||++++.. ++...+...+ + +..+.+++|+|+ .|....
T Consensus 654 ~~~--GaW~cfDEfNrl~~--------~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNp-gY~gr~ 722 (3245)
T 3vkg_A 654 CQC--GAWGCFDEFNRLEE--------RILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNP-GYAGRS 722 (3245)
T ss_dssp HHH--TCEEEEETTTSSCH--------HHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCC-CGGGCC
T ss_pred hhc--CcEEEehhhhcCCH--------HHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCC-CccCcc
Confidence 544 45889999999843 2222211111 1 123567777775 677777
Q ss_pred hcCHHHhhcceEEEeeCCCHHHHHHHHH
Q psy14504 190 EKDAAFERRFQKILVEEPDIEETISILR 217 (951)
Q Consensus 190 ~~~~~l~~Rf~~i~~~~p~~~er~~il~ 217 (951)
++++++++||..|.+..|+.+...+|+-
T Consensus 723 eLP~nLk~lFr~v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 723 NLPDNLKKLFRSMAMIKPDREMIAQVML 750 (3245)
T ss_dssp CSCHHHHTTEEEEECCSCCHHHHHHHHH
T ss_pred cChHHHHhhcEEEEEeCCCHHHHHHHHH
Confidence 8999999999999999999998888753
No 154
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.39 E-value=2.3e-12 Score=150.58 Aligned_cols=186 Identities=15% Similarity=0.157 Sum_probs=120.2
Q ss_pred ccCCChHHHHHHHHHHHHhhh----cCCCCCC----CCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSR----SGLSDAK----RPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~----~~~~~~~----~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
+.++|++.+++.+..++..+. .++..+. .+..++||+||||||||++|+++|+.+ +.+++.++++++..
T Consensus 39 ~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l---~~~~i~in~s~~~~ 115 (516)
T 1sxj_A 39 QQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQEL---GYDILEQNASDVRS 115 (516)
T ss_dssp GGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHT---TCEEEEECTTSCCC
T ss_pred HHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHc---CCCEEEEeCCCcch
Confidence 568999999999999987643 2222221 133489999999999999999999998 67899999988765
Q ss_pred hhchhcccCCCCCCccccccchhHHH-----HHhCCCeEEEEccccccCHH---HHHHHHHHhhcceeecCCCeEeecCC
Q psy14504 512 KHSISRLIGAPPGYIGYEEGGYLTEI-----VRRKPYSLILLDEIEKANSD---VFNILLQILDDGRLTDNRGRTINFRN 583 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~~~l~~~-----~~~~~~~vl~iDEid~~~~~---~~~~Ll~~le~g~~~~~~g~~~~~~~ 583 (951)
.......+....+ ......++.. .....++||||||+|.+... ..+.|++++++. +
T Consensus 116 ~~~~~~~i~~~~~---~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~~l~~L~~~l~~~-------------~ 179 (516)
T 1sxj_A 116 KTLLNAGVKNALD---NMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKT-------------S 179 (516)
T ss_dssp HHHHHHTGGGGTT---BCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTTHHHHHHHHHHHC-------------S
T ss_pred HHHHHHHHHHHhc---cccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHHHHHHHHHHHHhc-------------C
Confidence 4322221111000 0000001111 12345789999999999764 348888888752 2
Q ss_pred eEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 584 TIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 584 ~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
..+|+++|..... .+ +.+.+|+ ..+.|++++.+++.+++...+. ..+
T Consensus 180 ~~iIli~~~~~~~----------------------~l-~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~-------~~~-- 226 (516)
T 1sxj_A 180 TPLILICNERNLP----------------------KM-RPFDRVC-LDIQFRRPDANSIKSRLMTIAI-------REK-- 226 (516)
T ss_dssp SCEEEEESCTTSS----------------------TT-GGGTTTS-EEEECCCCCHHHHHHHHHHHHH-------HHT--
T ss_pred CCEEEEEcCCCCc----------------------cc-hhhHhce-EEEEeCCCCHHHHHHHHHHHHH-------HcC--
Confidence 2244444432110 12 3455565 6999999999999998655443 234
Q ss_pred cccchHHHHHHHHh
Q psy14504 664 LKISKAALKKISNI 677 (951)
Q Consensus 664 l~~~~~~~~~L~~~ 677 (951)
+.+++++++.|++.
T Consensus 227 ~~i~~~~l~~la~~ 240 (516)
T 1sxj_A 227 FKLDPNVIDRLIQT 240 (516)
T ss_dssp CCCCTTHHHHHHHH
T ss_pred CCCCHHHHHHHHHH
Confidence 56889999999874
No 155
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.39 E-value=5.5e-13 Score=152.26 Aligned_cols=172 Identities=19% Similarity=0.307 Sum_probs=117.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEeccccccchhchhcccCCCCCCccccccchhHHHHH-hC-CCeEE
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR-RK-PYSLI 546 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~-~~-~~~vl 546 (951)
.+++|+||||||||++|++|++.+... +.+++.+++.++.... ...+ . ......... .. .++||
T Consensus 131 ~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~-~~~~-~----------~~~~~~~~~~~~~~~~vL 198 (440)
T 2z4s_A 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDL-VDSM-K----------EGKLNEFREKYRKKVDIL 198 (440)
T ss_dssp CCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHH-HHHH-H----------TTCHHHHHHHHTTTCSEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHH-HHHH-H----------cccHHHHHHHhcCCCCEE
Confidence 369999999999999999999988443 5678888887764321 0000 0 001111111 12 56899
Q ss_pred EEccccccCH--HHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhH
Q psy14504 547 LLDEIEKANS--DVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF 624 (951)
Q Consensus 547 ~iDEid~~~~--~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l 624 (951)
||||++.+.. ..++.|+..++.- ...+..+|+||+..+..+ ..+.+.+
T Consensus 199 ~IDEi~~l~~~~~~q~~l~~~l~~l----------~~~~~~iIitt~~~~~~l--------------------~~l~~~L 248 (440)
T 2z4s_A 199 LIDDVQFLIGKTGVQTELFHTFNEL----------HDSGKQIVICSDREPQKL--------------------SEFQDRL 248 (440)
T ss_dssp EEECGGGGSSCHHHHHHHHHHHHHH----------HTTTCEEEEEESSCGGGC--------------------SSCCHHH
T ss_pred EEeCcccccCChHHHHHHHHHHHHH----------HHCCCeEEEEECCCHHHH--------------------HHHHHHH
Confidence 9999999986 7888888888641 112345667777655432 1367889
Q ss_pred hhccC--cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHhcccccccccccccchHHHHHHH
Q psy14504 625 INRID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNIGFDLIYGARDVHGCKKSLSILL 699 (951)
Q Consensus 625 ~~R~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~~~~~~~g~~dlhg~~~~l~~~l 699 (951)
++||. .++.|.+++.+++.+|+...+.. .+ +.++++++++|+... ..++|++.+. ++++.
T Consensus 249 ~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~-------~~--~~i~~e~l~~la~~~---~gn~R~l~~~---L~~~~ 310 (440)
T 2z4s_A 249 VSRFQMGLVAKLEPPDEETRKSIARKMLEI-------EH--GELPEEVLNFVAENV---DDNLRRLRGA---IIKLL 310 (440)
T ss_dssp HHHHHSSBCCBCCCCCHHHHHHHHHHHHHH-------HT--CCCCTTHHHHHHHHC---CSCHHHHHHH---HHHHH
T ss_pred HhhccCCeEEEeCCCCHHHHHHHHHHHHHH-------cC--CCCCHHHHHHHHHhc---CCCHHHHHHH---HHHHH
Confidence 99995 68999999999999997765542 34 678999999998743 3456666666 44444
No 156
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.38 E-value=1.3e-12 Score=147.51 Aligned_cols=200 Identities=14% Similarity=0.132 Sum_probs=132.2
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC------CCceEEeccccccchh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN------EESIIRIDMSEFIEKH 513 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~------~~~~~~~~~~~~~~~~ 513 (951)
..++|++..++.+...+.....+ ....+++|+||||||||++|+++++.+... +..++.+++.......
T Consensus 19 ~~~~gr~~~~~~l~~~l~~~~~~-----~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 93 (387)
T 2v1u_A 19 DVLPHREAELRRLAEVLAPALRG-----EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPY 93 (387)
T ss_dssp SCCTTCHHHHHHHHHTTGGGTSS-----CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHcC-----CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHH
Confidence 56889999999998888654211 112369999999999999999999987432 5678888887655432
Q ss_pred c----hhcccCCCCCCccccccc---hhHHHHHh-CCCeEEEEccccccCHH--HHHHHHHHhhcceeecCCCeEee-cC
Q psy14504 514 S----ISRLIGAPPGYIGYEEGG---YLTEIVRR-KPYSLILLDEIEKANSD--VFNILLQILDDGRLTDNRGRTIN-FR 582 (951)
Q Consensus 514 ~----~~~l~g~~~~~~g~~~~~---~l~~~~~~-~~~~vl~iDEid~~~~~--~~~~Ll~~le~g~~~~~~g~~~~-~~ 582 (951)
. +...+|......|..... .+...+.. ..+.||||||++.+... .++.|+.+++..... . ..
T Consensus 94 ~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~-------~~~~ 166 (387)
T 2v1u_A 94 RVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQEL-------GDRV 166 (387)
T ss_dssp HHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-----------
T ss_pred HHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhc-------CCCc
Confidence 1 122234433333332221 22223332 33679999999999876 677777776531100 1 34
Q ss_pred CeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCChhhHHHHHHHHHHHHHHHHHhcC
Q psy14504 583 NTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQLNILKNKLLKMN 661 (951)
Q Consensus 583 ~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~ 661 (951)
++++|++||.... ...+.+.+.+|+.. .+.|+|++.+++.+++...+... .
T Consensus 167 ~~~~I~~t~~~~~---------------------~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~-------~ 218 (387)
T 2v1u_A 167 WVSLVGITNSLGF---------------------VENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEA-------F 218 (387)
T ss_dssp -CEEEEECSCSTT---------------------SSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHH-------B
T ss_pred eEEEEEEECCCch---------------------HhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhh-------c
Confidence 6788888886531 12467888999976 89999999999999977666421 1
Q ss_pred CccccchHHHHHHHHhcc
Q psy14504 662 MDLKISKAALKKISNIGF 679 (951)
Q Consensus 662 ~~l~~~~~~~~~L~~~~~ 679 (951)
....+++++++.++....
T Consensus 219 ~~~~~~~~~~~~l~~~~~ 236 (387)
T 2v1u_A 219 NPGVLDPDVVPLCAALAA 236 (387)
T ss_dssp CTTTBCSSHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHH
Confidence 125688999999988543
No 157
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.38 E-value=2.7e-12 Score=135.87 Aligned_cols=187 Identities=21% Similarity=0.336 Sum_probs=117.2
Q ss_pred ccCCChHHHHHHHHHHHHhhh-------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 512 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~-------~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 512 (951)
+.++|++.++..+........ .++.. |. +++|+||||||||+++++|+..+ ...++.+++.++...
T Consensus 16 ~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~---~~-g~ll~G~~G~GKTtl~~~i~~~~---~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 16 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI---PK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM 88 (254)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCC---CS-EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHS
T ss_pred HHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCC---CC-eEEEECCCCCCHHHHHHHHHHHh---CCCEEEeeHHHHHHH
Confidence 456777777777766554321 11211 22 49999999999999999999988 457777777654332
Q ss_pred hchhcccCCCCCCccccc--cchhHHHHHhCCCeEEEEccccccC--------------HHHHHHHHHHhhcceeecCCC
Q psy14504 513 HSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN--------------SDVFNILLQILDDGRLTDNRG 576 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~iDEid~~~--------------~~~~~~Ll~~le~g~~~~~~g 576 (951)
+.|... .+.++.......++++|+||+|.+. ...++.++..|+.|.
T Consensus 89 ------------~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~------ 150 (254)
T 1ixz_A 89 ------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE------ 150 (254)
T ss_dssp ------------CTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCC------
T ss_pred ------------HhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCC------
Confidence 111111 1223333344456999999998653 134567777777542
Q ss_pred eEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHHHH
Q psy14504 577 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILK 654 (951)
Q Consensus 577 ~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~~ 654 (951)
....++++++||.+. .++|.+++ ||+..+.+++++.++..+|++..+
T Consensus 151 ---~~~~~i~~a~t~~p~------------------------~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~---- 199 (254)
T 1ixz_A 151 ---KDTAIVVMAATNRPD------------------------ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA---- 199 (254)
T ss_dssp ---TTCCEEEEEEESCGG------------------------GSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHH----
T ss_pred ---CCCCEEEEEccCCch------------------------hCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHH----
Confidence 123456777777542 24677776 899999999999999999965432
Q ss_pred HHHHhcCCccccchHH-HHHHHHhcccccccccccccc
Q psy14504 655 NKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 655 ~~~~~~~~~l~~~~~~-~~~L~~~~~~~~~g~~dlhg~ 691 (951)
+ + +.+++++ +..++.. .+.|..+||.+.
T Consensus 200 ---~--~--~~~~~~~~~~~la~~--~~G~~~~dl~~~ 228 (254)
T 1ixz_A 200 ---R--G--KPLAEDVDLALLAKR--TPGFVGADLENL 228 (254)
T ss_dssp ---T--T--SCBCTTCCHHHHHHT--CTTCCHHHHHHH
T ss_pred ---c--C--CCCCcccCHHHHHHH--cCCCCHHHHHHH
Confidence 1 2 2233333 5666662 233334677776
No 158
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.38 E-value=2.6e-12 Score=134.74 Aligned_cols=165 Identities=14% Similarity=0.204 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCC
Q psy14504 446 DEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY 525 (951)
Q Consensus 446 ~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~ 525 (951)
..++..+...+... +..+++|+||||||||++|+++++.+...+.++..+++.++..... .
T Consensus 37 ~~~~~~l~~~~~~~---------~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-------- 97 (242)
T 3bos_A 37 DELIGALKSAASGD---------GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST--A-------- 97 (242)
T ss_dssp HHHHHHHHHHHHTC---------SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG--G--------
T ss_pred HHHHHHHHHHHhCC---------CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--H--------
Confidence 45566666555421 1237999999999999999999999876677888888877554210 0
Q ss_pred ccccccchhHHHHHhCCCeEEEEccccccCHHH--HHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccc
Q psy14504 526 IGYEEGGYLTEIVRRKPYSLILLDEIEKANSDV--FNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKG 603 (951)
Q Consensus 526 ~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~--~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~ 603 (951)
.+ .. ...+++|||||++.+.... ++.|+.+++.-. ......+|++||.....+
T Consensus 98 -------~~-~~--~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~---------~~~~~~ii~~~~~~~~~~------ 152 (242)
T 3bos_A 98 -------LL-EG--LEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVA---------EQKRGSLIVSASASPMEA------ 152 (242)
T ss_dssp -------GG-TT--GGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHH---------HHCSCEEEEEESSCTTTT------
T ss_pred -------HH-Hh--ccCCCEEEEeccccccCCHHHHHHHHHHHHHHH---------HcCCCeEEEEcCCCHHHH------
Confidence 00 01 1235799999999997655 888888877410 112234677777554322
Q ss_pred cHHHHHHHHHHHHHhccChhHhhccC--cEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHh
Q psy14504 604 DKEIIKLAVMNEVKIYFRPEFINRID--DIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 677 (951)
Q Consensus 604 ~~~~~~~~~~~~~~~~f~p~l~~R~~--~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 677 (951)
..+.+.+.+|+. .++.|++++.+++.+++...+. ..+ +.++++++++|+..
T Consensus 153 --------------~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~-------~~~--~~~~~~~~~~l~~~ 205 (242)
T 3bos_A 153 --------------GFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAA-------MRG--LQLPEDVGRFLLNR 205 (242)
T ss_dssp --------------TCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHH-------HTT--CCCCHHHHHHHHHH
T ss_pred --------------HHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHH-------HcC--CCCCHHHHHHHHHH
Confidence 123477888985 7999999999999999766553 234 57899999999884
No 159
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.37 E-value=1.2e-12 Score=125.47 Aligned_cols=135 Identities=16% Similarity=0.091 Sum_probs=93.6
Q ss_pred CccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHH
Q psy14504 45 PVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE 122 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 122 (951)
+++|++..++.+...+.. ....++||+||||||||++|+++++..... +.+++ ++++.+....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~-------~~~~v-~~~~~~~~~~------- 66 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNA-------QGEFV-YRELTPDNAP------- 66 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTT-------TSCCE-EEECCTTTSS-------
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCcc-------CCCEE-EECCCCCcch-------
Confidence 689999999999887653 566799999999999999999999865332 45677 8877655321
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc--CCcEEEEEeecchHHH--HhhhcCHHHhhc
Q psy14504 123 DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS--RGELHCIGATTLNEYR--QYIEKDAAFERR 198 (951)
Q Consensus 123 ~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le--~~~i~vI~at~~~~~~--~~~~~~~~l~~R 198 (951)
.....+..+. +.+|||||++.+.+ +.+..|...++ ...+.+|++||.+... ..-...+.|..|
T Consensus 67 -~~~~~~~~a~----~g~l~ldei~~l~~--------~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~r 133 (145)
T 3n70_A 67 -QLNDFIALAQ----GGTLVLSHPEHLTR--------EQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHIIAELYYC 133 (145)
T ss_dssp -CHHHHHHHHT----TSCEEEECGGGSCH--------HHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHH
T ss_pred -hhhcHHHHcC----CcEEEEcChHHCCH--------HHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHH
Confidence 2344555553 34899999999843 45566777764 3458899999975421 122456788888
Q ss_pred ceEEEeeCC
Q psy14504 199 FQKILVEEP 207 (951)
Q Consensus 199 f~~i~~~~p 207 (951)
+..+.+..|
T Consensus 134 l~~~~i~lP 142 (145)
T 3n70_A 134 FAMTQIACL 142 (145)
T ss_dssp HHHHEEECC
T ss_pred hcCCEEeCC
Confidence 875444444
No 160
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.36 E-value=7.4e-12 Score=143.61 Aligned_cols=212 Identities=14% Similarity=0.086 Sum_probs=127.7
Q ss_pred CccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh-----hhhhcCccccc
Q psy14504 45 PVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI-----ALLLAGTKYRG 119 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~-----~~l~~~~~~~g 119 (951)
.++|++..++.+...+... .++||+||||||||++|+++|+.+.. +..+..+.+ +.+.. .+.+
T Consensus 23 ~ivGq~~~i~~l~~al~~~--~~VLL~GpPGtGKT~LAraLa~~l~~--------~~~f~~~~~~~~t~~dL~G--~~~~ 90 (500)
T 3nbx_X 23 GLYERSHAIRLCLLAALSG--ESVFLLGPPGIAKSLIARRLKFAFQN--------ARAFEYLMTRFSTPEEVFG--PLSI 90 (500)
T ss_dssp TCSSCHHHHHHHHHHHHHT--CEEEEECCSSSSHHHHHHHGGGGBSS--------CCEEEEECCTTCCHHHHHC--CBC-
T ss_pred hhHHHHHHHHHHHHHHhcC--CeeEeecCchHHHHHHHHHHHHHHhh--------hhHHHHHHHhcCCHHHhcC--cccH
Confidence 6899999999988877665 69999999999999999999987621 122333222 22221 1111
Q ss_pred cHHHHHHHHHHHHHhcC--CCeEEEEecccccccCCCCCCchhHHhhhhhhccCCc------------EEEEEeecchHH
Q psy14504 120 EFEDRLKKILKEISNNQ--KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE------------LHCIGATTLNEY 185 (951)
Q Consensus 120 ~~~~~l~~~~~~a~~~~--~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~------------i~vI~at~~~~~ 185 (951)
.... -...+..+.... .+.||||||++.+. ...++.|+..|+.+. ..+|+|||+.+-
T Consensus 91 ~~~~-~~g~~~~~~~g~l~~~~IL~IDEI~r~~--------~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lpe 161 (500)
T 3nbx_X 91 QALK-DEGRYERLTSGYLPEAEIVFLDEIWKAG--------PAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELPE 161 (500)
T ss_dssp ----------CBCCTTSGGGCSEEEEESGGGCC--------HHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCCC
T ss_pred HHHh-hchhHHhhhccCCCcceeeeHHhHhhhc--------HHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCCC
Confidence 1100 011122111110 24589999998763 366778888886432 235778875320
Q ss_pred HHhhhcCHHHhhcceE-EEeeCCCH-HHHHHHHHHHHHh-------------------hhhhcCCCCChHHHHHHHHHhh
Q psy14504 186 RQYIEKDAAFERRFQK-ILVEEPDI-EETISILRGLQKK-------------------YEVHHGVEITDPAIVAASELSY 244 (951)
Q Consensus 186 ~~~~~~~~~l~~Rf~~-i~~~~p~~-~er~~il~~~~~~-------------------~~~~~~~~i~~~~l~~~~~~s~ 244 (951)
.....+++.+||.. +.+++|+. +++..|++..... .....++.++++++++++.+..
T Consensus 162 --~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~ 239 (500)
T 3nbx_X 162 --ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQ 239 (500)
T ss_dssp --TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHH
T ss_pred --ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHH
Confidence 11244699999986 99999987 7788888643211 1112367788888888887763
Q ss_pred hh--c--ccCCCchhHHHHHHHHHHHhHHhhc--CCchHHH
Q psy14504 245 RY--I--SDRFMPDKAIDLIDEAAAKIKIEID--SKPEIMD 279 (951)
Q Consensus 245 ~~--~--~~~~~p~~a~~ll~~a~~~~~~~~~--~~~~~l~ 279 (951)
.. . .....++....++..+.+.+..... ..|+++.
T Consensus 240 ~lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 240 QLDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred HhhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 21 1 1123456677777777666655442 3455443
No 161
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.35 E-value=3.2e-11 Score=132.87 Aligned_cols=179 Identities=18% Similarity=0.323 Sum_probs=119.6
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhccc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLI 519 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 519 (951)
+.++||+.+++.+...+...... ..+..+++|+|||||||||+|++||..+ +.++....++.+..
T Consensus 25 ~~~~g~~~~~~~l~~~i~~~~~~----~~~~~~~ll~Gp~G~GKTTLa~~ia~~l---~~~~~~~sg~~~~~-------- 89 (334)
T 1in4_A 25 DEFIGQENVKKKLSLALEAAKMR----GEVLDHVLLAGPPGLGKTTLAHIIASEL---QTNIHVTSGPVLVK-------- 89 (334)
T ss_dssp GGCCSCHHHHHHHHHHHHHHHHH----TCCCCCEEEESSTTSSHHHHHHHHHHHH---TCCEEEEETTTCCS--------
T ss_pred HHccCcHHHHHHHHHHHHHHHhc----CCCCCeEEEECCCCCcHHHHHHHHHHHh---CCCEEEEechHhcC--------
Confidence 45779999999998888654211 1223469999999999999999999998 33443333322111
Q ss_pred CCCCCCccccccchhHHHHH-hCCCeEEEEccccccCHHHHHHHHHHhhcceee-----cCCCeE--eecCCeEEEEecC
Q psy14504 520 GAPPGYIGYEEGGYLTEIVR-RKPYSLILLDEIEKANSDVFNILLQILDDGRLT-----DNRGRT--INFRNTIIVMTSN 591 (951)
Q Consensus 520 g~~~~~~g~~~~~~l~~~~~-~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~-----~~~g~~--~~~~~~iiI~ttn 591 (951)
...+..... ....+|+||||++.+.+.+++.|+..++.+... ...... .....+.++.+++
T Consensus 90 -----------~~~l~~~~~~~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 90 -----------QGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp -----------HHHHHHHHHHCCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred -----------HHHHHHHHHHccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 112222222 235689999999999999999999888764321 000011 1223455666666
Q ss_pred CCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHH
Q psy14504 592 LGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAAL 671 (951)
Q Consensus 592 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~ 671 (951)
.. ..+++.+.+||...+.|++++.+++.+|+...... .+ +.++++++
T Consensus 159 ~~------------------------~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~-------~~--~~~~~~~~ 205 (334)
T 1in4_A 159 RS------------------------GLLSSPLRSRFGIILELDFYTVKELKEIIKRAASL-------MD--VEIEDAAA 205 (334)
T ss_dssp CG------------------------GGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHH-------TT--CCBCHHHH
T ss_pred Cc------------------------ccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHH-------cC--CCcCHHHH
Confidence 42 23678899999878999999999999997665432 23 67889999
Q ss_pred HHHHHh
Q psy14504 672 KKISNI 677 (951)
Q Consensus 672 ~~L~~~ 677 (951)
.+|++.
T Consensus 206 ~~ia~~ 211 (334)
T 1in4_A 206 EMIAKR 211 (334)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 999884
No 162
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.35 E-value=8.4e-12 Score=143.74 Aligned_cols=172 Identities=21% Similarity=0.309 Sum_probs=114.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC-------CCceEEeccccccch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN-------EESIIRIDMSEFIEK 512 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~-------~~~~~~~~~~~~~~~ 512 (951)
+.++|++..++.+...+.+.. .+++||+||||||||++|+++|+.+... +.+++.++++
T Consensus 180 d~iiGr~~~i~~l~~~l~r~~---------~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~----- 245 (468)
T 3pxg_A 180 DPVIGRSKEIQRVIEVLSRRT---------KNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG----- 245 (468)
T ss_dssp CCCCCCHHHHHHHHHHHHCSS---------SCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--------
T ss_pred CCccCcHHHHHHHHHHHhccC---------CCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC-----
Confidence 469999999999998887422 2379999999999999999999998442 3456666665
Q ss_pred hchhcccCCCCCCcccccc--chhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEec
Q psy14504 513 HSISRLIGAPPGYIGYEEG--GYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTS 590 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~~--~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~tt 590 (951)
..|.|..+. +.+...+....++||||| ...++++.|++.|+.| ++++|++|
T Consensus 246 ----------~~~~g~~e~~~~~~~~~~~~~~~~iLfiD----~~~~a~~~L~~~L~~g-------------~v~vI~at 298 (468)
T 3pxg_A 246 ----------TKYRGEFEDRLKKVMDEIRQAGNIILFID----AAIDASNILKPSLARG-------------ELQCIGAT 298 (468)
T ss_dssp -----------------CTTHHHHHHHHHTCCCCEEEEC----C--------CCCTTSS-------------SCEEEEEC
T ss_pred ----------ccccchHHHHHHHHHHHHHhcCCeEEEEe----CchhHHHHHHHhhcCC-------------CEEEEecC
Confidence 114443322 344555666778999999 5667888999988864 46688888
Q ss_pred CCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHH
Q psy14504 591 NLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAA 670 (951)
Q Consensus 591 n~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~ 670 (951)
|...-. . ...+.+.|.+||+ +|.|++++.++..+|+...+..+.. .++ +.+++++
T Consensus 299 ~~~e~~--~-----------------~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~---~~~--~~i~~~a 353 (468)
T 3pxg_A 299 TLDEYR--K-----------------YIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEA---HHR--VSITDDA 353 (468)
T ss_dssp CTTTTH--H-----------------HHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGG---GSS--CSCCHHH
T ss_pred CHHHHH--H-----------------HhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHH---hcC--CCCCHHH
Confidence 875411 0 1135789999995 7999999999999997755433221 123 6789999
Q ss_pred HHHHHHh
Q psy14504 671 LKKISNI 677 (951)
Q Consensus 671 ~~~L~~~ 677 (951)
+..++..
T Consensus 354 l~~l~~~ 360 (468)
T 3pxg_A 354 IEAAVKL 360 (468)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999874
No 163
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.34 E-value=8.1e-12 Score=134.06 Aligned_cols=187 Identities=21% Similarity=0.336 Sum_probs=116.7
Q ss_pred ccCCChHHHHHHHHHHHHhhh-------cCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch
Q psy14504 440 KRVVGQDEAISAVSNAIRRSR-------SGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK 512 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~-------~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~ 512 (951)
+.++|+++++..+........ .++.. |. .++|+||||||||+++++|+..+ ...++.+++.++...
T Consensus 40 ~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~---~~-gvll~Gp~GtGKTtl~~~i~~~~---~~~~i~~~~~~~~~~ 112 (278)
T 1iy2_A 40 KDVAGAEEAKEELKEIVEFLKNPSRFHEMGARI---PK-GVLLVGPPGVGKTHLARAVAGEA---RVPFITASGSDFVEM 112 (278)
T ss_dssp GGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCC---CC-EEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEHHHHHHS
T ss_pred HHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCC---CC-eEEEECCCcChHHHHHHHHHHHc---CCCEEEecHHHHHHH
Confidence 457788888777776654332 12211 22 49999999999999999999988 457788877655432
Q ss_pred hchhcccCCCCCCccccc--cchhHHHHHhCCCeEEEEccccccC--------------HHHHHHHHHHhhcceeecCCC
Q psy14504 513 HSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLDEIEKAN--------------SDVFNILLQILDDGRLTDNRG 576 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~iDEid~~~--------------~~~~~~Ll~~le~g~~~~~~g 576 (951)
+.+... .+.++.......++++|+||++.+. ....+.++..|+.|.
T Consensus 113 ------------~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~------ 174 (278)
T 1iy2_A 113 ------------FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFE------ 174 (278)
T ss_dssp ------------TTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCC------
T ss_pred ------------HhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCC------
Confidence 111111 1233444444567999999998652 234455666666432
Q ss_pred eEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhh--ccCcEEEecCCChhhHHHHHHHHHHHHH
Q psy14504 577 RTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFIN--RIDDIIVFRYLNRKNILSIANIQLNILK 654 (951)
Q Consensus 577 ~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~--R~~~~i~f~~l~~~~~~~i~~~~l~~~~ 654 (951)
....++++++||.+. .++|.+++ ||+..+.|++++.++..+|++..+
T Consensus 175 ---~~~~~i~~a~t~~p~------------------------~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~---- 223 (278)
T 1iy2_A 175 ---KDTAIVVMAATNRPD------------------------ILDPALLRPGRFDRQIAIDAPDVKGREQILRIHA---- 223 (278)
T ss_dssp ---TTCCEEEEEEESCTT------------------------SSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHH----
T ss_pred ---CCCCEEEEEecCCch------------------------hCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHH----
Confidence 123467777888643 24677775 899999999999999999976433
Q ss_pred HHHHhcCCccccchHH-HHHHHHhcccccccccccccc
Q psy14504 655 NKLLKMNMDLKISKAA-LKKISNIGFDLIYGARDVHGC 691 (951)
Q Consensus 655 ~~~~~~~~~l~~~~~~-~~~L~~~~~~~~~g~~dlhg~ 691 (951)
+ + +.+++++ +..++.. .+.+..+||...
T Consensus 224 ---~--~--~~~~~~~~~~~la~~--~~G~~~~dl~~l 252 (278)
T 1iy2_A 224 ---R--G--KPLAEDVDLALLAKR--TPGFVGADLENL 252 (278)
T ss_dssp ---T--T--SCBCTTCCHHHHHHT--CTTCCHHHHHHH
T ss_pred ---c--c--CCCCcccCHHHHHHH--cCCCCHHHHHHH
Confidence 1 1 2333333 5556552 222333677766
No 164
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.33 E-value=5.9e-12 Score=156.16 Aligned_cols=201 Identities=20% Similarity=0.283 Sum_probs=135.1
Q ss_pred CCccccHHHHHHHHHHHHcC---------CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC
Q psy14504 44 DPVIGRDDEIRRAIQVLQRR---------SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG 114 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~~~---------~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~ 114 (951)
+.++|++..++.+...+.+. +..++||+||||||||++|+++|+.+... +.+++.++++.+...
T Consensus 558 ~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~-------~~~~i~i~~~~~~~~ 630 (854)
T 1qvr_A 558 KRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDT-------EEAMIRIDMTEYMEK 630 (854)
T ss_dssp HHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSS-------GGGEEEECTTTCCSS
T ss_pred cccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCC-------CCcEEEEechhccch
Confidence 46899999998888766532 11478999999999999999999998543 457788887654321
Q ss_pred ---c-------cccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC------------
Q psy14504 115 ---T-------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG------------ 172 (951)
Q Consensus 115 ---~-------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~------------ 172 (951)
+ .|.|..+ ...+...+. ...++||||||++.+. .++++.|+.+++.+
T Consensus 631 ~~~s~l~g~~~~~~G~~~--~g~l~~~~~-~~~~~vl~lDEi~~l~--------~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 631 HAVSRLIGAPPGYVGYEE--GGQLTEAVR-RRPYSVILFDEIEKAH--------PDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGGGGC----------------CHHHHHH-HCSSEEEEESSGGGSC--------HHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred hHHHHHcCCCCCCcCccc--cchHHHHHH-hCCCeEEEEecccccC--------HHHHHHHHHHhccCceECCCCCEecc
Confidence 0 1112111 122223333 3446799999999883 47888999999865
Q ss_pred -cEEEEEeecchH---------------HHHh------hhcCHHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhh---
Q psy14504 173 -ELHCIGATTLNE---------------YRQY------IEKDAAFERRFQK-ILVEEPDIEETISILRGLQKKYEVH--- 226 (951)
Q Consensus 173 -~i~vI~at~~~~---------------~~~~------~~~~~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~--- 226 (951)
.+++|+|||... +... -...|.|.+||+. +.|.+|+.+++..|++.++.++...
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~ 779 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 779 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 466999999621 1111 1357899999975 8889999999999998877654331
Q ss_pred --cCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHH
Q psy14504 227 --HGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 227 --~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~ 265 (951)
..+.++++++..++..+.. ..+..+...++++.++.
T Consensus 780 ~~~~~~~~~~a~~~L~~~~~~---~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 780 KRISLELTEAAKDFLAERGYD---PVFGARPLRRVIQRELE 817 (854)
T ss_dssp TTCEEEECHHHHHHHHHHHCB---TTTBTSTHHHHHHHHTH
T ss_pred CCceEEECHHHHHHHHHcCCC---CCCChHHHHHHHHHHHH
Confidence 1356899999998887531 11223556666665543
No 165
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.33 E-value=3.4e-13 Score=129.09 Aligned_cols=130 Identities=9% Similarity=0.139 Sum_probs=88.5
Q ss_pred CccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHH
Q psy14504 45 PVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFE 122 (951)
Q Consensus 45 ~lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 122 (951)
+++|++..++.+...+.. ....++||+||||||||++|+++++.. . +++.++++.+.. .+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~----------~-~~~~~~~~~~~~--~~----- 66 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNG----------T-PWVSPARVEYLI--DM----- 66 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTT----------S-CEECCSSTTHHH--HC-----
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhC----------C-CeEEechhhCCh--Hh-----
Confidence 588999999888887653 566889999999999999999999865 3 677777765542 11
Q ss_pred HHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccC---CcEEEEEeecchHHH-HhhhcCHHHhhc
Q psy14504 123 DRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSR---GELHCIGATTLNEYR-QYIEKDAAFERR 198 (951)
Q Consensus 123 ~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~---~~i~vI~at~~~~~~-~~~~~~~~l~~R 198 (951)
...++..+. +.+|||||++.+.. +.+..|...++. ..+++|+|||.+... ..- +.+.+..|
T Consensus 67 --~~~~~~~a~----~~~l~lDei~~l~~--------~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~-~~~~L~~r 131 (143)
T 3co5_A 67 --PMELLQKAE----GGVLYVGDIAQYSR--------NIQTGITFIIGKAERCRVRVIASCSYAAGSDGIS-CEEKLAGL 131 (143)
T ss_dssp --HHHHHHHTT----TSEEEEEECTTCCH--------HHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--C-HHHHHHHH
T ss_pred --hhhHHHhCC----CCeEEEeChHHCCH--------HHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhC-ccHHHHHH
Confidence 344455442 45899999999843 456667777763 458999999976311 000 44667778
Q ss_pred ceEEEeeCC
Q psy14504 199 FQKILVEEP 207 (951)
Q Consensus 199 f~~i~~~~p 207 (951)
|..+.+..|
T Consensus 132 l~~~~i~lP 140 (143)
T 3co5_A 132 FSESVVRIP 140 (143)
T ss_dssp SSSEEEEEC
T ss_pred hcCcEEeCC
Confidence 875444444
No 166
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.32 E-value=1.6e-11 Score=146.12 Aligned_cols=222 Identities=14% Similarity=0.192 Sum_probs=138.1
Q ss_pred HHHHhcCCCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCC--------CCCcCCCeEEEE
Q psy14504 35 TEKARLGKLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEV--------PNSLLSKKILLL 106 (951)
Q Consensus 35 ~e~~rp~~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~--------~~~~~~~~~~~~ 106 (951)
..++||..|++++|++..++.+...+... .+++|+|||||||||+|+++|+.+..... +.... .+.+..
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-~p~i~~ 108 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-MPRIKT 108 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-SCEEEE
T ss_pred cccccccccceEECchhhHhhccccccCC--CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-CCcEEE
Confidence 46789999999999999999888877765 69999999999999999999997632210 00000 011111
Q ss_pred ehhhh----------------------------------------hcCccccccHHHHHHHHHHHH--------------
Q psy14504 107 DIALL----------------------------------------LAGTKYRGEFEDRLKKILKEI-------------- 132 (951)
Q Consensus 107 ~~~~l----------------------------------------~~~~~~~g~~~~~l~~~~~~a-------------- 132 (951)
.+... ..+.............+|...
T Consensus 109 ~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~ 188 (604)
T 3k1j_A 109 VPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPA 188 (604)
T ss_dssp EETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCG
T ss_pred EecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccc
Confidence 00000 000000000000011111100
Q ss_pred --------HhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-----------------------cEEEEEeec
Q psy14504 133 --------SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-----------------------ELHCIGATT 181 (951)
Q Consensus 133 --------~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-----------------------~i~vI~at~ 181 (951)
.....+.+|||||++.|. ...++.|+..|+.+ ++++|++||
T Consensus 189 ~~~i~~g~~~~a~~gvL~LDEi~~l~--------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn 260 (604)
T 3k1j_A 189 HERVEPGMIHRAHKGVLFIDEIATLS--------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGN 260 (604)
T ss_dssp GGGEECCHHHHTTTSEEEETTGGGSC--------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEEC
T ss_pred cccccCceeeecCCCEEEEechhhCC--------HHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecC
Confidence 001134599999999983 36677788777632 467999999
Q ss_pred chHHHHhhhcCHHHhhcce----EEEeeCC---CHHHHHHHHHHHHHhhhhh-cCCCCChHHHHHHHHHhhhhcccCC--
Q psy14504 182 LNEYRQYIEKDAAFERRFQ----KILVEEP---DIEETISILRGLQKKYEVH-HGVEITDPAIVAASELSYRYISDRF-- 251 (951)
Q Consensus 182 ~~~~~~~~~~~~~l~~Rf~----~i~~~~p---~~~er~~il~~~~~~~~~~-~~~~i~~~~l~~~~~~s~~~~~~~~-- 251 (951)
+... ..++++|++||. .+.|+.. +.+....+++.+....... ....++++++..++..+.+....+.
T Consensus 261 ~~~~---~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l 337 (604)
T 3k1j_A 261 LDTV---DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHL 337 (604)
T ss_dssp HHHH---HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEE
T ss_pred HHHH---hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhcccccc
Confidence 8742 268999999996 2444332 4566667776666554422 3357899999999988766554443
Q ss_pred --CchhHHHHHHHHHHHhHHh
Q psy14504 252 --MPDKAIDLIDEAAAKIKIE 270 (951)
Q Consensus 252 --~p~~a~~ll~~a~~~~~~~ 270 (951)
.++.+.+++..|...+...
T Consensus 338 ~~~~R~l~~llr~A~~~A~~~ 358 (604)
T 3k1j_A 338 TLRLRDLGGIVRAAGDIAVKK 358 (604)
T ss_dssp ECCHHHHHHHHHHHHHHHHHT
T ss_pred ccCHHHHHHHHHHHHHHHHhc
Confidence 5788888888877665543
No 167
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.30 E-value=2.6e-12 Score=129.34 Aligned_cols=156 Identities=20% Similarity=0.289 Sum_probs=104.5
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-------CCCceEEeccccccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIE 511 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~ 511 (951)
.+.++|++..++.+...+.... ..+++|+||||||||++|+++++.+.. .+.+++.+++..+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~---------~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (195)
T 1jbk_A 21 LDPVIGRDEEIRRTIQVLQRRT---------KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVA 91 (195)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS---------SCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHT
T ss_pred ccccccchHHHHHHHHHHhcCC---------CCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhc
Confidence 3568899999988888775311 236999999999999999999998844 245677777765432
Q ss_pred hhchhcccCCCCCCcccccc--chhHHHH-HhCCCeEEEEccccccC--------HHHHHHHHHHhhcceeecCCCeEee
Q psy14504 512 KHSISRLIGAPPGYIGYEEG--GYLTEIV-RRKPYSLILLDEIEKAN--------SDVFNILLQILDDGRLTDNRGRTIN 580 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~~--~~l~~~~-~~~~~~vl~iDEid~~~--------~~~~~~Ll~~le~g~~~~~~g~~~~ 580 (951)
.. .+.|.... ..+...+ +...+.||||||+|.+. ..+++.|..+++.
T Consensus 92 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~~------------ 149 (195)
T 1jbk_A 92 GA----------KYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALAR------------ 149 (195)
T ss_dssp TT----------CSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHHT------------
T ss_pred cC----------CccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhcc------------
Confidence 10 11111110 1122222 34557899999999986 3447778877765
Q ss_pred cCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCChhhHHHHH
Q psy14504 581 FRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLNRKNILSIA 646 (951)
Q Consensus 581 ~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i~ 646 (951)
.++.+|++||..... ....+.+.+.+||+ .+.|++++.++..+|+
T Consensus 150 -~~~~~i~~~~~~~~~-------------------~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 150 -GELHCVGATTLDEYR-------------------QYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp -TSCCEEEEECHHHHH-------------------HHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred -CCeEEEEeCCHHHHH-------------------HHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 245678888742210 01135789999996 7999999999988764
No 168
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=99.27 E-value=2.9e-12 Score=135.45 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=84.6
Q ss_pred cccccccccchHHHHHHHHhhc---ccC-CccceeecccccCCcceEehhHHHHHhcC--CccEEEcCCChHHHHHHHhh
Q psy14504 682 IYGARDVHGCKKSLSILLKKIH---KKS-PEANFIFLGDLINKGPQSLDTLRMVYSMR--NYAKIVLGNHEIHLLDVLIN 755 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~---~~~-~~~~li~~gd~~~~g~~~~~~l~~~~~~~--~~~~~v~GNHe~~~l~~~~~ 755 (951)
.+.++|+|+++..++++++.+. ... ..|.++++||++++|+.+.++++++.++. ..+++|+||||.++..+...
T Consensus 4 i~~isD~H~~~~~l~~~l~~~~~~~~~~~~~d~ii~~GD~~~~g~~~~~~~~~l~~l~~~~~~~~v~GNhD~~~~~~~~~ 83 (252)
T 1nnw_A 4 VAVLANIAGNLPALTAALSRIEEMREEGYEIEKYYILGNIVGLFPYPKEVIEVIKDLTKKENVKIIRGKYDQIIAMSDPH 83 (252)
T ss_dssp EEEEECCTTCHHHHHHHHHHHHHHHHTTCCEEEEEEESCSSSSSSCHHHHHHHHHHHHHHSCEEEECCHHHHHHHHSCTT
T ss_pred EEEEeecCCCHHHHHHHHHHHHhhhhccCCCCEEEEeCccCCCCCCHHHHHHHHHhhHhhcCeeEEecchHHHhhccccc
Confidence 3568999999999999998887 432 45899999999999999889999998864 45899999999987664322
Q ss_pred cccCCc-----cc----cHHHhhCCCCHHHHHHHHhcCCceEEeC----CEEEEeccc
Q psy14504 756 INKKSK-----LD----TFDDILDAPDKKKLVSWLRTQPLAIYYK----KYLMIHAGV 800 (951)
Q Consensus 756 ~~~~~~-----~~----~~~~~~~~~~~~~~~~~l~~~p~~~~~~----~~~~vHAG~ 800 (951)
...... .. ....|......++.++||+++|..+..+ +++++||+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~~~~~i~~~H~~p 141 (252)
T 1nnw_A 84 ATDPGYIDKLELPGHVKKALKFTWEKLGHEGREYLRDLPIYLVDKIGGNEVFGVYGSP 141 (252)
T ss_dssp CSSSGGGGGSSCCHHHHHHHHHHHHHHHHHHHHHHHTSCSCEEEEETTEEEEEESSCS
T ss_pred cCCcccccchhhhHHHHHHHHHHHHHCCHHHHHHHHhCCceEEEeeCCcEEEEEcCCC
Confidence 110000 00 0001111112356789999999876642 699999986
No 169
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.24 E-value=3.6e-11 Score=135.56 Aligned_cols=196 Identities=15% Similarity=0.177 Sum_probs=127.4
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccC---CCceEEeccccccchhc--
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNN---EESIIRIDMSEFIEKHS-- 514 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~---~~~~~~~~~~~~~~~~~-- 514 (951)
..++|++..++.+...+.....+ .+..+++|+||||||||++++++++.+... +..++.+++........
T Consensus 20 ~~~~gr~~e~~~l~~~l~~~~~~-----~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 94 (386)
T 2qby_A 20 DELPHREDQIRKIASILAPLYRE-----EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVL 94 (386)
T ss_dssp SCCTTCHHHHHHHHHSSGGGGGT-----CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHcC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHH
Confidence 56889999999988887654222 112369999999999999999999987433 45788888765443211
Q ss_pred --hhcccCCCCCCcccccc---chhHHHHHhC-CCeEEEEccccccC----HHHHHHHHHHhhcceeecCCCeEeecCCe
Q psy14504 515 --ISRLIGAPPGYIGYEEG---GYLTEIVRRK-PYSLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGRTINFRNT 584 (951)
Q Consensus 515 --~~~l~g~~~~~~g~~~~---~~l~~~~~~~-~~~vl~iDEid~~~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~ 584 (951)
+...+|...+..|.... ..+...+... .+.||||||++.+. ...+..|+..++.. ...++
T Consensus 95 ~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~----------~~~~~ 164 (386)
T 2qby_A 95 ADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEV----------NKSKI 164 (386)
T ss_dssp HHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSC----------CC--E
T ss_pred HHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCcCHHHHHHhhchhhc----------CCCeE
Confidence 11222332222232221 2233334333 37899999999875 56777777777641 12456
Q ss_pred EEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCc-EEEecCCChhhHHHHHHHHHHHHHHHHHhcCCc
Q psy14504 585 IIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDD-IIVFRYLNRKNILSIANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 585 iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~-~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~ 663 (951)
.+|++||.... ...+.+.+.+|+.. .+.|+|++.+++.+++...+.. ....
T Consensus 165 ~~I~~~~~~~~---------------------~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~-------~~~~ 216 (386)
T 2qby_A 165 SFIGITNDVKF---------------------VDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQM-------AFKP 216 (386)
T ss_dssp EEEEEESCGGG---------------------GGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHH-------HBCS
T ss_pred EEEEEECCCCh---------------------HhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHh-------hccC
Confidence 78888885331 12356777888864 8999999999999997765532 1113
Q ss_pred cccchHHHHHHHHhc
Q psy14504 664 LKISKAALKKISNIG 678 (951)
Q Consensus 664 l~~~~~~~~~L~~~~ 678 (951)
..++++++++++...
T Consensus 217 ~~~~~~~~~~l~~~~ 231 (386)
T 2qby_A 217 GVLPDNVIKLCAALA 231 (386)
T ss_dssp SCSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH
Confidence 568899999998843
No 170
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.24 E-value=6.3e-11 Score=131.14 Aligned_cols=214 Identities=12% Similarity=0.112 Sum_probs=129.1
Q ss_pred HHHHHHHhhccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHH-HHHhccCCCceEEeccccc
Q psy14504 431 LLNIENLLCKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTL-SACIFNNEESIIRIDMSEF 509 (951)
Q Consensus 431 l~~l~~~l~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~l-a~~l~~~~~~~~~~~~~~~ 509 (951)
...+.+.+.. |+||+.++..+.-++.... .. .+...|+||.|+||| ||++|+++ ++.+.. ..++...++..
T Consensus 205 ~~~l~~sIap-I~G~e~vK~aLll~L~GG~---~k-~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR--~~ft~g~~ss~ 276 (506)
T 3f8t_A 205 LTTFARAIAP-LPGAEEVGKMLALQLFSCV---GK-NSERLHVLLAGYPVV-CSEILHHVLDHLAPR--GVYVDLRRTEL 276 (506)
T ss_dssp HHHHHHHHCC-STTCHHHHHHHHHHHTTCC---SS-GGGCCCEEEESCHHH-HHHHHHHHHHHTCSS--EEEEEGGGCCH
T ss_pred HHHHHHHhcc-cCCCHHHHHHHHHHHcCCc---cc-cCCceeEEEECCCCh-HHHHHHHHHHHhCCC--eEEecCCCCCc
Confidence 3456777888 9999998877777664221 00 112237999999999 99999999 776521 12222222110
Q ss_pred cchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEe
Q psy14504 510 IEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMT 589 (951)
Q Consensus 510 ~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~t 589 (951)
..- ... ..+. .| . ..-.+.+..+.++|+|+|||+++++..|..|++.|+++.++.. |. .-..++.+|+|
T Consensus 277 ~gL-t~s-~r~~----tG-~--~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~-G~-~lparf~VIAA 345 (506)
T 3f8t_A 277 TDL-TAV-LKED----RG-W--ALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVD-GI-ALNARCAVLAA 345 (506)
T ss_dssp HHH-SEE-EEES----SS-E--EEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEET-TE-EEECCCEEEEE
T ss_pred cCc-eEE-EEcC----CC-c--ccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEEC-CE-EcCCCeEEEEE
Confidence 000 000 1111 11 0 1112344456679999999999999999999999999999877 76 44578899999
Q ss_pred cCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCC-Chhh----HHH-HHHHHHHHHHHHHHhcCCc
Q psy14504 590 SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYL-NRKN----ILS-IANIQLNILKNKLLKMNMD 663 (951)
Q Consensus 590 tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l-~~~~----~~~-i~~~~l~~~~~~~~~~~~~ 663 (951)
+|.-. .... ..+ + -...+++++++|||.++....+ +.++ ... +-...+.++....+...+.
T Consensus 346 ~NP~~-~yd~--~~s-------~---~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~ 412 (506)
T 3f8t_A 346 INPGE-QWPS--DPP-------I---ARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPA 412 (506)
T ss_dssp ECCCC---CC--SCG-------G---GGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSC
T ss_pred eCccc-ccCC--CCC-------c---cccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCC
Confidence 99744 1100 000 0 0236899999999976655443 2221 111 1113344444444434556
Q ss_pred cccchHHHHHHHH
Q psy14504 664 LKISKAALKKISN 676 (951)
Q Consensus 664 l~~~~~~~~~L~~ 676 (951)
..+++++.++|.+
T Consensus 413 p~ls~ea~~yI~~ 425 (506)
T 3f8t_A 413 PELTEEARKRLEH 425 (506)
T ss_dssp CEECHHHHHHHHH
T ss_pred ceeCHHHHHHHHH
Confidence 8899999998876
No 171
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.22 E-value=1.2e-10 Score=132.48 Aligned_cols=217 Identities=15% Similarity=0.111 Sum_probs=135.0
Q ss_pred CCccccHHHHHHHHHHH-Hc------CCCCCcEE--EcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-
Q psy14504 44 DPVIGRDDEIRRAIQVL-QR------RSKNNPVL--IGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA- 113 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l-~~------~~~~~iLL--~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~- 113 (951)
+.++|++++++.+...+ .. ....+++| +||||||||++++.+++.+..... ....+..++.+++.....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 100 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAA-KEGLTVKQAYVNAFNAPNL 100 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHH-HTTCCEEEEEEEGGGCCSH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHh-ccCCceeEEEEECCCCCCH
Confidence 67999999999998887 42 34567889 999999999999999988743100 000134556666532100
Q ss_pred -----------Ccc--cccc-HHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc-----C--C
Q psy14504 114 -----------GTK--YRGE-FEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS-----R--G 172 (951)
Q Consensus 114 -----------~~~--~~g~-~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le-----~--~ 172 (951)
+.. ..+. ....+..+...+....++.||+|||+|.+..... .+.+....|...+. . .
T Consensus 101 ~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l~~l~~~~~~~~~~~~~~ 178 (412)
T 1w5s_A 101 YTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDLYTLLRVHEEIPSRDGVN 178 (412)
T ss_dssp HHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHHHHHHTHHHHSCCTTSCC
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHHHHHHHHHHhcccCCCCc
Confidence 000 0111 1222233333333335688999999999865310 11233333333332 3 6
Q ss_pred cEEEEEeecchHHHHhhhcC---HHHhhcceE-EEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcc
Q psy14504 173 ELHCIGATTLNEYRQYIEKD---AAFERRFQK-ILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYIS 248 (951)
Q Consensus 173 ~i~vI~at~~~~~~~~~~~~---~~l~~Rf~~-i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~ 248 (951)
++.+|++|+.+++.. .++ +.+.++|.. +.+++++.++..++++..+.... ....++++++..++..+.....
T Consensus 179 ~v~lI~~~~~~~~~~--~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~ 254 (412)
T 1w5s_A 179 RIGFLLVASDVRALS--YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGL--RDTVWEPRHLELISDVYGEDKG 254 (412)
T ss_dssp BEEEEEEEEETHHHH--HHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHB--CTTSCCHHHHHHHHHHHCGGGT
T ss_pred eEEEEEEeccccHHH--HHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcC--CCCCCChHHHHHHHHHHHHhcc
Confidence 788998887665322 234 677788764 99999999999999987655321 2245788889988888873222
Q ss_pred cCCCchhHHHHHHHHHHHh
Q psy14504 249 DRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 249 ~~~~p~~a~~ll~~a~~~~ 267 (951)
..+.|..+..++..++..+
T Consensus 255 ~~G~p~~~~~l~~~a~~~a 273 (412)
T 1w5s_A 255 GDGSARRAIVALKMACEMA 273 (412)
T ss_dssp SCCCHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 2245688888887766443
No 172
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.20 E-value=2e-11 Score=122.14 Aligned_cols=148 Identities=22% Similarity=0.281 Sum_probs=97.8
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhcc-------CCCceEEeccccccc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFN-------NEESIIRIDMSEFIE 511 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~-------~~~~~~~~~~~~~~~ 511 (951)
...++|++..++.+...+.... ..+++|+||||||||++|+++++.+.. .+.+++.+++..+..
T Consensus 21 ~~~~~g~~~~~~~l~~~l~~~~---------~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (187)
T 2p65_A 21 LDPVIGRDTEIRRAIQILSRRT---------KNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIA 91 (187)
T ss_dssp SCCCCSCHHHHHHHHHHHTSSS---------SCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHH
T ss_pred cchhhcchHHHHHHHHHHhCCC---------CCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhc
Confidence 4578999999988888775311 236899999999999999999998854 245666676655432
Q ss_pred hhchhcccCCCCCCccccc--cchhHHHHHh-CCCeEEEEccccccC---------HHHHHHHHHHhhcceeecCCCeEe
Q psy14504 512 KHSISRLIGAPPGYIGYEE--GGYLTEIVRR-KPYSLILLDEIEKAN---------SDVFNILLQILDDGRLTDNRGRTI 579 (951)
Q Consensus 512 ~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~-~~~~vl~iDEid~~~---------~~~~~~Ll~~le~g~~~~~~g~~~ 579 (951)
.. .+.|... ...+...+.. ..+.||||||++.+. ..+++.|...++.
T Consensus 92 ~~----------~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~~----------- 150 (187)
T 2p65_A 92 GA----------KYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLAR----------- 150 (187)
T ss_dssp HC----------CSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHHT-----------
T ss_pred CC----------CchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHhc-----------
Confidence 10 0111111 0112222333 356899999999987 5677888888875
Q ss_pred ecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhccCcEEEecCCC
Q psy14504 580 NFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRIDDIIVFRYLN 638 (951)
Q Consensus 580 ~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~~~~i~f~~l~ 638 (951)
.++++|+++|..... ....+.+.+.+||+ .+.+++++
T Consensus 151 --~~~~ii~~~~~~~~~-------------------~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 151 --GELRCIGATTVSEYR-------------------QFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp --TCSCEEEEECHHHHH-------------------HHTTTCHHHHHHEE-EEECCSCC
T ss_pred --CCeeEEEecCHHHHH-------------------HHHhccHHHHHhcC-cccCCCCC
Confidence 345688888842210 01135789999996 68888764
No 173
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=99.09 E-value=4.8e-10 Score=119.04 Aligned_cols=117 Identities=20% Similarity=0.156 Sum_probs=89.1
Q ss_pred ccccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHHHHHhhcccC-
Q psy14504 681 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKK- 759 (951)
Q Consensus 681 ~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~- 759 (951)
....++||||++..|+++++.+... ..|.++++||++++|+.+.++++++.++. .+.+|+||||.+++.+......-
T Consensus 13 ~i~~iSDiHg~~~~l~~vl~~~~~~-~~D~ii~~GDlv~~g~~~~~~~~~l~~~~-~~~~v~GNhD~~~~~~~~~~~~~~ 90 (270)
T 3qfm_A 13 KIALLSDIHGNTTALEAVLADARQL-GVDEYWLLGDILMPGTGRRRILDLLDQLP-ITARVLGNWEDSLWHGVRKELDST 90 (270)
T ss_dssp EEEEECCCTTCHHHHHHHHHHHHHT-TCCEEEECSCCSSSSSCSHHHHHHHHTSC-EEEECCCHHHHHHHHHHTTCSCTT
T ss_pred EEEEEecCCCCHHHHHHHHHHHHhc-CCCEEEEcCCCCCCCCCHHHHHHHHHccC-CEEEEcCChHHHHHHhhccccCCC
Confidence 3466899999999999999988854 56899999999999999999999998774 47899999999998876542111
Q ss_pred Ccc----ccHHHhhCCCCHHHHHHHHhcCCceEEe--C--CEEEEecc
Q psy14504 760 SKL----DTFDDILDAPDKKKLVSWLRTQPLAIYY--K--KYLMIHAG 799 (951)
Q Consensus 760 ~~~----~~~~~~~~~~~~~~~~~~l~~~p~~~~~--~--~~~~vHAG 799 (951)
... .....|......++.++||+++|..+.. + ++++|||.
T Consensus 91 ~~~~~~~~~~~~~~~~~L~~~~~~~L~~LP~~~~~~~~g~~i~lvHg~ 138 (270)
T 3qfm_A 91 RPSQRYLLRQCQYVLEEISLEEIEVLHNQPLQIHRQFGDLTVGISHHL 138 (270)
T ss_dssp SHHHHHHHHHHHHHHTTSCHHHHHHHHSCCSEEEEEETTEEEEEESSB
T ss_pred cHHHHHHHHHHHHHHHHcCHHHHHHHHhCCCceEEEECCcEEEEEECC
Confidence 110 1112344444557889999999998643 3 68999965
No 174
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.09 E-value=5.7e-11 Score=133.11 Aligned_cols=159 Identities=25% Similarity=0.361 Sum_probs=73.7
Q ss_pred HHHHHHhhccCCChHHHHHHHHHHHHhh--hcCCC---CCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14504 432 LNIENLLCKRVVGQDEAISAVSNAIRRS--RSGLS---DAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 506 (951)
Q Consensus 432 ~~l~~~l~~~v~Gq~~~~~~l~~~~~~~--~~~~~---~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 506 (951)
.++.+.|.+.|+||+++++.+..++... +..+. ....+..++||+||||||||++|++||+.+ +.+++.+++
T Consensus 7 ~~i~~~Ld~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l---~~~~~~v~~ 83 (444)
T 1g41_A 7 REIVSELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLA---NAPFIKVEA 83 (444)
T ss_dssp HHHHHHHHTTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHT---TCCEEEEEG
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHc---CCCceeecc
Confidence 4567788999999999999999888442 11111 111233479999999999999999999999 779999998
Q ss_pred ccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccccccC--------HHHHHHHHHHhhcceeecCCCeE
Q psy14504 507 SEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEIEKAN--------SDVFNILLQILDDGRLTDNRGRT 578 (951)
Q Consensus 507 ~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEid~~~--------~~~~~~Ll~~le~g~~~~~~g~~ 578 (951)
+.+.. .+|+|.+....+......+. .++++||++... ..+.+.|+..|+. ...
T Consensus 84 ~~~~~-----------~g~vG~d~e~~lr~lf~~a~-~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg-~~~------ 144 (444)
T 1g41_A 84 TKFTE-----------VGYVGKEVDSIIRDLTDSAM-KLVRQQEIAKNRARAEDVAEERILDALLPPAKN-QWG------ 144 (444)
T ss_dssp GGGC---------------CCCCTHHHHHHHHHHHH-HHHHHHHHHSCC-------------------------------
T ss_pred hhhcc-----------cceeeccHHHHHHHHHHHHH-hcchhhhhhhhhccchhhHHHHHHHHHHHHhhc-ccc------
Confidence 87664 24777654444443333221 245688887653 4567888888773 111
Q ss_pred eecCCeEEEEe-cCCCchhhhhhccccHHHHHHHHHHHHHhccChhHh--hccCcEEEecCCChh
Q psy14504 579 INFRNTIIVMT-SNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFI--NRIDDIIVFRYLNRK 640 (951)
Q Consensus 579 ~~~~~~iiI~t-tn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~--~R~~~~i~f~~l~~~ 640 (951)
... ++++ ||... .++|.|+ +|+|..|.++.++..
T Consensus 145 ---~~~-v~a~~TN~~~------------------------~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 145 ---EVE-NHDSHSSTRQ------------------------AFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp -----------------------------------------------------------------
T ss_pred ---ccc-cccccccCHH------------------------HHHHHHHcCCCcceEEEEcCCCCc
Confidence 111 2333 66422 2445555 488888888888776
No 175
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.09 E-value=1.2e-10 Score=137.60 Aligned_cols=160 Identities=15% Similarity=0.149 Sum_probs=96.0
Q ss_pred CCccccHHHHHHHHHHHHcCCC-----------CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCC--cCCCeEEEEehhh
Q psy14504 44 DPVIGRDDEIRRAIQVLQRRSK-----------NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNS--LLSKKILLLDIAL 110 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~~~~~-----------~~iLL~GppGtGKTtla~~la~~l~~~~~~~~--~~~~~~~~~~~~~ 110 (951)
..++|++...+.+...+..... .|+||+||||||||++|+++|+.+.....+.. .....+.......
T Consensus 295 ~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~ 374 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVRE 374 (595)
T ss_dssp STTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSG
T ss_pred chhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeec
Confidence 4689999988777665554421 28999999999999999999987622111100 0001111100000
Q ss_pred hhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC---------------cEE
Q psy14504 111 LLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELH 175 (951)
Q Consensus 111 l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~---------------~i~ 175 (951)
. ..|..... ...+..+ .++||||||++.+.+ +.++.|+..|+.+ ++.
T Consensus 375 ~-----~~g~~~~~-~G~l~~A----~~gil~IDEid~l~~--------~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~ 436 (595)
T 3f9v_A 375 K-----GTGEYYLE-AGALVLA----DGGIAVIDEIDKMRD--------EDRVAIHEAMEQQTVSIAKAGIVAKLNARAA 436 (595)
T ss_dssp G-----GTSSCSEE-ECHHHHH----SSSEECCTTTTCCCS--------HHHHHHHHHHHSSSEEEESSSSEEEECCCCE
T ss_pred c-----cccccccc-CCeeEec----CCCcEEeehhhhCCH--------hHhhhhHHHHhCCEEEEecCCcEEEecCceE
Confidence 0 01111000 0112222 245999999999843 5667788888654 356
Q ss_pred EEEeecchH--HH------HhhhcCHHHhhcceE--EEeeCCCHHHHHHHHHHHHHh
Q psy14504 176 CIGATTLNE--YR------QYIEKDAAFERRFQK--ILVEEPDIEETISILRGLQKK 222 (951)
Q Consensus 176 vI~at~~~~--~~------~~~~~~~~l~~Rf~~--i~~~~p~~~er~~il~~~~~~ 222 (951)
+|+|||+.. |. ....+++++++||+. +..+.|+.+ ...|++++...
T Consensus 437 vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 437 VIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp EEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred EEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 899999863 10 012789999999974 555666666 77777776654
No 176
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.04 E-value=1.5e-10 Score=133.18 Aligned_cols=99 Identities=23% Similarity=0.242 Sum_probs=74.7
Q ss_pred hccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcc
Q psy14504 439 CKRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRL 518 (951)
Q Consensus 439 ~~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l 518 (951)
.+.++||+++++.+...+.....+.. |..++||+||||||||++|+++|+.+.. ..+|+.++++++...
T Consensus 36 ~~~iiG~~~~~~~l~~~~~~~~~~~~----~~~~iLl~GppGtGKT~la~ala~~l~~-~~~~~~~~~~~~~~~------ 104 (456)
T 2c9o_A 36 ASGLVGQENAREACGVIVELIKSKKM----AGRAVLLAGPPGTGKTALALAIAQELGS-KVPFCPMVGSEVYST------ 104 (456)
T ss_dssp ETTEESCHHHHHHHHHHHHHHHTTCC----TTCEEEEECCTTSSHHHHHHHHHHHHCT-TSCEEEEEGGGGCCS------
T ss_pred hhhccCHHHHHHHHHHHHHHHHhCCC----CCCeEEEECCCcCCHHHHHHHHHHHhCC-CceEEEEeHHHHHHH------
Confidence 46789999999998888877665532 3347999999999999999999999832 378999998877643
Q ss_pred cCCCCCCccccccchhHHHHHh------CCCeEEEEccccccCH
Q psy14504 519 IGAPPGYIGYEEGGYLTEIVRR------KPYSLILLDEIEKANS 556 (951)
Q Consensus 519 ~g~~~~~~g~~~~~~l~~~~~~------~~~~vl~iDEid~~~~ 556 (951)
|+|..+. +...++. ..++||||||+|.+.+
T Consensus 105 ------~~~~~~~--~~~~f~~a~~~~~~~~~il~iDEid~l~~ 140 (456)
T 2c9o_A 105 ------EIKKTEV--LMENFRRAIGLRIKETKEVYEGEVTELTP 140 (456)
T ss_dssp ------SSCHHHH--HHHHHHHTEEEEEEEEEEEEEEEEEEEEE
T ss_pred ------hhhhhHH--HHHHHHHHHhhhhcCCcEEEEechhhccc
Confidence 5554442 4444433 4679999999998763
No 177
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.01 E-value=7.2e-09 Score=114.88 Aligned_cols=185 Identities=16% Similarity=0.252 Sum_probs=117.0
Q ss_pred CCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc--------
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA-------- 113 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~-------- 113 (951)
..+.++|++++++.+...+... ..++++||+|+|||++++.+++.. + ++.+++.....
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~----------~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNER----------P--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHS----------S--EEEEEHHHHHHTTTCBCHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHc----------C--cEEEEeecccccccCCCHH
Confidence 3457899999999999988764 689999999999999999999875 2 44455433210
Q ss_pred ---------------------------Cccc---cccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHh
Q psy14504 114 ---------------------------GTKY---RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGN 163 (951)
Q Consensus 114 ---------------------------~~~~---~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~ 163 (951)
+... .......+ ..+.......++.+|+|||+|.+.... ...+.+...
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~vlvlDe~~~~~~~~-~~~~~~~~~ 153 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVF-RELNDLGEELGEFIVAFDEAQYLRFYG-SRGGKELLA 153 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHH-HHHHHHHHHHSCEEEEEETGGGGGGBT-TTTTHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHH-HHHHHHHhccCCEEEEEeCHHHHhccC-ccchhhHHH
Confidence 0000 01112112 222222111238899999999986411 011234455
Q ss_pred hhhhhccC-CcEEEEEeecchHH-HHh---hhcCHHHhhcce-EEEeeCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHH
Q psy14504 164 MLKPELSR-GELHCIGATTLNEY-RQY---IEKDAAFERRFQ-KILVEEPDIEETISILRGLQKKYEVHHGVEITDPAIV 237 (951)
Q Consensus 164 ~L~~~le~-~~i~vI~at~~~~~-~~~---~~~~~~l~~Rf~-~i~~~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~ 237 (951)
.|...++. ..+.+|.+++...+ ... ......+..|+. .+.+.+++.++..++++..... .+..++++.+.
T Consensus 154 ~L~~~~~~~~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~----~~~~~~~~~~~ 229 (350)
T 2qen_A 154 LFAYAYDSLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFRE----VNLDVPENEIE 229 (350)
T ss_dssp HHHHHHHHCTTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHT----TTCCCCHHHHH
T ss_pred HHHHHHHhcCCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHH----cCCCCCHHHHH
Confidence 56555543 57888888776542 222 122334555654 6999999999999998765542 35567888888
Q ss_pred HHHHHhhhh
Q psy14504 238 AASELSYRY 246 (951)
Q Consensus 238 ~~~~~s~~~ 246 (951)
.+...++++
T Consensus 230 ~i~~~tgG~ 238 (350)
T 2qen_A 230 EAVELLDGI 238 (350)
T ss_dssp HHHHHHTTC
T ss_pred HHHHHhCCC
Confidence 888888764
No 178
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=98.97 E-value=3.6e-10 Score=118.70 Aligned_cols=117 Identities=17% Similarity=0.213 Sum_probs=88.9
Q ss_pred cccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHHHHHhhcccCCc
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKKSK 761 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~~~ 761 (951)
...++|+|+++..++++++.+. ..|.++++||++++|+.+.++++++.++.. +.+|+||||.++..+.........
T Consensus 6 i~~isDiHg~~~~l~~~l~~~~---~~d~ii~~GDl~~~g~~~~~~~~~l~~~~~-~~~v~GNhD~~~~~~~~~~~~~~~ 81 (246)
T 3rqz_A 6 ILIISDVHANLVALEAVLSDAG---RVDDIWSLGDIVGYGPRPRECVELVRVLAP-NISVIGNHDWACIGRLSLDEFNPV 81 (246)
T ss_dssp EEEECCCTTCHHHHHHHHHHHC---SCSEEEECSCCSSSSSCHHHHHHHHHHHCS-SEECCCHHHHHHTCCCCCC--CGG
T ss_pred EEEEeecCCCHHHHHHHHHhcc---CCCEEEECCCcCCCCCCHHHHHHHHHhcCC-CEEEeCchHHHHhccCCccccCHH
Confidence 3568999999999999998877 568999999999999999999999988763 689999999887654322111111
Q ss_pred cccHHHhhCCCCHHHHHHHHhcCCceEEeCCEEEEecccCc
Q psy14504 762 LDTFDDILDAPDKKKLVSWLRTQPLAIYYKKYLMIHAGVAK 802 (951)
Q Consensus 762 ~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~vHAG~~p 802 (951)
......+......++.++||+++|..+..++++++||+...
T Consensus 82 ~~~~~~~~~~~l~~~~~~~L~~lp~~~~~~~i~~~Hg~p~~ 122 (246)
T 3rqz_A 82 ARFASYWTTMQLQAEHLQYLESLPNRMIDGDWTVVHGSPRH 122 (246)
T ss_dssp GGCHHHHHHHHCCHHHHHHHHHCCSEEEETTEEEESSCSSS
T ss_pred HHHHHHHHHHHcCHHHHHHHHhCCcEEEECCEEEEECCcCC
Confidence 12222233333346788999999999998999999998653
No 179
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.95 E-value=5.9e-09 Score=116.84 Aligned_cols=180 Identities=16% Similarity=0.227 Sum_probs=118.3
Q ss_pred CCCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhc-------
Q psy14504 43 LDPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLA------- 113 (951)
Q Consensus 43 l~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~------- 113 (951)
++.++|.+..++.+...+. .....+++++|++|||||++|++++..... .+.+++.++++.+..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r-------~~~~fv~v~~~~~~~~~~~~el 208 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDR-------SKEPFVALNVASIPRDIFEAEL 208 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTT-------TTSCEEEEETTTSCHHHHHHHH
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCC-------CCCCeEEEecCCCCHHHHHHHh
Confidence 6789999988888877665 355678999999999999999999986532 246788999876421
Q ss_pred -C---ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEE
Q psy14504 114 -G---TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHC 176 (951)
Q Consensus 114 -~---~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~v 176 (951)
| +.+.|... .....|..+. +.+||||||+.|. .+.+..|+..++.+ ++++
T Consensus 209 fg~~~g~~tga~~-~~~g~~~~a~----~gtlfldei~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ri 275 (387)
T 1ny5_A 209 FGYEKGAFTGAVS-SKEGFFELAD----GGTLFLDEIGELS--------LEAQAKLLRVIESGKFYRLGGRKEIEVNVRI 275 (387)
T ss_dssp HCBCTTSSTTCCS-CBCCHHHHTT----TSEEEEESGGGCC--------HHHHHHHHHHHHHSEECCBTCCSBEECCCEE
T ss_pred cCCCCCCCCCccc-ccCCceeeCC----CcEEEEcChhhCC--------HHHHHHHHHHHhcCcEEeCCCCceeeccEEE
Confidence 0 11111111 0122344432 4589999999994 46777888887643 5789
Q ss_pred EEeecchHHH--HhhhcCHHHhhcceEEEeeCCCHHHH----HHHHHHHHHhhhhhcC---CCCChHHHHHHHHH
Q psy14504 177 IGATTLNEYR--QYIEKDAAFERRFQKILVEEPDIEET----ISILRGLQKKYEVHHG---VEITDPAIVAASEL 242 (951)
Q Consensus 177 I~at~~~~~~--~~~~~~~~l~~Rf~~i~~~~p~~~er----~~il~~~~~~~~~~~~---~~i~~~~l~~~~~~ 242 (951)
|+|||.+.-. ..-...+.|..|+..+.+..|+..+| ..+++.++.++....+ ..+++++++.+...
T Consensus 276 i~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~ 350 (387)
T 1ny5_A 276 LAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSY 350 (387)
T ss_dssp EEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHS
T ss_pred EEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhC
Confidence 9999975321 11234567777887666666665544 4555666665543333 34788888876654
No 180
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.94 E-value=1.4e-09 Score=139.13 Aligned_cols=85 Identities=18% Similarity=0.232 Sum_probs=57.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCC-CCCccc----cc--cchhHHHHHhCCCe
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAP-PGYIGY----EE--GGYLTEIVRRKPYS 544 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~-~~~~g~----~~--~~~l~~~~~~~~~~ 544 (951)
.+|++||||||||++|++++......+.+.+.+++.+..+..- .+.+|-. ..++++ ++ -+.++..++...++
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~-~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~ 1162 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1162 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHH-HHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCe
Confidence 5899999999999999999987755577777777766443211 1222321 113333 22 24455566788899
Q ss_pred EEEEccccccCHH
Q psy14504 545 LILLDEIEKANSD 557 (951)
Q Consensus 545 vl~iDEid~~~~~ 557 (951)
++|+||++.+.|.
T Consensus 1163 ~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1163 VIVVDSVAALTPK 1175 (1706)
T ss_dssp EEEESCGGGCCCH
T ss_pred EEEeCchHhcCcc
Confidence 9999999866543
No 181
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.93 E-value=9.6e-09 Score=114.14 Aligned_cols=195 Identities=17% Similarity=0.205 Sum_probs=123.5
Q ss_pred CCccccHHHHHHHHHHHH--cCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcC-------
Q psy14504 44 DPVIGRDDEIRRAIQVLQ--RRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAG------- 114 (951)
Q Consensus 44 ~~lvG~~~~i~~l~~~l~--~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~------- 114 (951)
..++|.+..+..+...+. .....+++++|++||||+++|++++..... ...++.++|+.+...
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~~vli~GesGtGKe~lAr~ih~~s~r--------~~~fv~vnc~~~~~~~~~~~lf 200 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKAPVLITGESGTGKEIVARLIHRYSGR--------KGAFVDLNCASIPQELAESELF 200 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCSCEEEECCTTSSHHHHHHHHHHHHCC--------CSCEEEEESSSSCTTTHHHHHH
T ss_pred ccccccchHHHHHHhhhhhhhccchhheEEeCCCchHHHHHHHHHHhccc--------cCCcEEEEcccCChHHHHHHhc
Confidence 468899888777766544 355678999999999999999999986622 223888998765311
Q ss_pred ----ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-------------cEEEE
Q psy14504 115 ----TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-------------ELHCI 177 (951)
Q Consensus 115 ----~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-------------~i~vI 177 (951)
+.+.|... .-...|+.+ + +.+||||||+.|. .+.+..|+..++.+ .+++|
T Consensus 201 g~~~g~~tga~~-~~~g~~~~a---~-~gtlfldei~~l~--------~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii 267 (368)
T 3dzd_A 201 GHEKGAFTGALT-RKKGKLELA---D-QGTLFLDEVGELD--------QRVQAKLLRVLETGSFTRLGGNQKIEVDIRVI 267 (368)
T ss_dssp EECSCSSSSCCC-CEECHHHHT---T-TSEEEEETGGGSC--------HHHHHHHHHHHHHSEECCBTCCCBEECCCEEE
T ss_pred CccccccCCccc-ccCChHhhc---C-CCeEEecChhhCC--------HHHHHHHHHHHHhCCcccCCCCcceeeeeEEE
Confidence 00111110 011233333 2 3489999999994 46777888888644 46799
Q ss_pred EeecchHHHH--hhhcCHHHhhcceEEEeeCCCHH----HHHHHHHHHHHhhhhhcC---CCCChHHHHHHHHHh-hhhc
Q psy14504 178 GATTLNEYRQ--YIEKDAAFERRFQKILVEEPDIE----ETISILRGLQKKYEVHHG---VEITDPAIVAASELS-YRYI 247 (951)
Q Consensus 178 ~at~~~~~~~--~~~~~~~l~~Rf~~i~~~~p~~~----er~~il~~~~~~~~~~~~---~~i~~~~l~~~~~~s-~~~~ 247 (951)
++||.+.... .-...+.|..|+..+.+..|+.. +...+++.++.++....+ ..+++++++.+.... .+-+
T Consensus 268 ~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNv 347 (368)
T 3dzd_A 268 SATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNV 347 (368)
T ss_dssp EEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHH
T ss_pred EecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHH
Confidence 9999764221 11234678888886665555544 455666777766544333 568999988777653 2222
Q ss_pred ccCCCchhHHHHHHHHHH
Q psy14504 248 SDRFMPDKAIDLIDEAAA 265 (951)
Q Consensus 248 ~~~~~p~~a~~ll~~a~~ 265 (951)
+...++++.++.
T Consensus 348 ------reL~n~i~~~~~ 359 (368)
T 3dzd_A 348 ------RELKNLIERAVI 359 (368)
T ss_dssp ------HHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHH
Confidence 444555555543
No 182
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.91 E-value=2.9e-09 Score=105.97 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=79.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc-cCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEcc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 550 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDE 550 (951)
.++|+||||||||+++++++..+. ..+..+..+++.++....... +. ... ...+...+. .+.+|+|||
T Consensus 40 ~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~--~~------~~~-~~~~~~~~~--~~~llilDE 108 (180)
T 3ec2_A 40 GLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLKHL--MD------EGK-DTKFLKTVL--NSPVLVLDD 108 (180)
T ss_dssp EEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHHHH--HH------HTC-CSHHHHHHH--TCSEEEEET
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH--hc------Cch-HHHHHHHhc--CCCEEEEeC
Confidence 699999999999999999999885 445566667766654321110 00 000 012222233 457999999
Q ss_pred cc--ccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhcc
Q psy14504 551 IE--KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI 628 (951)
Q Consensus 551 id--~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~ 628 (951)
++ .+++..++.|+.+++.. ...+..+|+|||...+.+... .. .+.+.+...+...+.+|+
T Consensus 109 ~~~~~~~~~~~~~l~~ll~~~----------~~~~~~ii~tsn~~~~~~~~~----~~----~~~~~l~~~~~~~i~~rl 170 (180)
T 3ec2_A 109 LGSERLSDWQRELISYIITYR----------YNNLKSTIITTNYSLQREEES----SV----RISADLASRLGENVVSKI 170 (180)
T ss_dssp CSSSCCCHHHHHHHHHHHHHH----------HHTTCEEEEECCCCSCC---C----HH----HHHHHHHHHHCHHHHHHH
T ss_pred CCCCcCCHHHHHHHHHHHHHH----------HHcCCCEEEEcCCChhHhhhh----cc----chhhHHHHHHHHHHHHHH
Confidence 98 57788888888888741 113467889999877653110 00 011234455666667776
Q ss_pred Cc
Q psy14504 629 DD 630 (951)
Q Consensus 629 ~~ 630 (951)
..
T Consensus 171 ~~ 172 (180)
T 3ec2_A 171 YE 172 (180)
T ss_dssp HH
T ss_pred Hh
Confidence 43
No 183
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.90 E-value=1.1e-08 Score=132.18 Aligned_cols=83 Identities=18% Similarity=0.220 Sum_probs=56.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCC-------CCccccccchhHHHHHhCCCe
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP-------GYIGYEEGGYLTEIVRRKPYS 544 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-------~~~g~~~~~~l~~~~~~~~~~ 544 (951)
+++|+||||||||+||.+++......+.....+++.+...... .+-+|... ...++.-...+...++...++
T Consensus 1429 ~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~-a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~~~~ 1507 (2050)
T 3cmu_A 1429 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1507 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHH-HHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHH-HHHcCCCchhceeecCChHHHHHHHHHHHHhcCCCC
Confidence 6999999999999999999998877788888888876554433 22223110 011111123344455678889
Q ss_pred EEEEccccccC
Q psy14504 545 LILLDEIEKAN 555 (951)
Q Consensus 545 vl~iDEid~~~ 555 (951)
+|||||++.+.
T Consensus 1508 lVVIDsi~al~ 1518 (2050)
T 3cmu_A 1508 VIVVDSVAALT 1518 (2050)
T ss_dssp EEEESCGGGCC
T ss_pred EEEEcChhHhc
Confidence 99999997544
No 184
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.89 E-value=6.6e-09 Score=118.11 Aligned_cols=200 Identities=17% Similarity=0.168 Sum_probs=122.4
Q ss_pred ccCCChHHHHHHHHHHH-HhhhcCCCCCCCCceEEEE--eCCCCCcHHHHHHHHHHHhccC------CCceEEecccccc
Q psy14504 440 KRVVGQDEAISAVSNAI-RRSRSGLSDAKRPYGSFMF--LGPTGVGKTELCKTLSACIFNN------EESIIRIDMSEFI 510 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~-~~~~~~~~~~~~p~~~~Ll--~GppGtGKT~lA~~la~~l~~~------~~~~~~~~~~~~~ 510 (951)
..++|.+..++.+...+ .....+. .....++++ +||||||||++++.+++.+... +..++.+++....
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~---~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 98 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGA---GLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAP 98 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSS---CBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCC
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCC---CCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCC
Confidence 56889999899998888 6554321 011236888 9999999999999999887431 3457777775433
Q ss_pred chhch----hcccCCCCCCcccccc---chhHHHHH-hCCCeEEEEccccccC------HHHHHHHHHHhhcceeecCCC
Q psy14504 511 EKHSI----SRLIGAPPGYIGYEEG---GYLTEIVR-RKPYSLILLDEIEKAN------SDVFNILLQILDDGRLTDNRG 576 (951)
Q Consensus 511 ~~~~~----~~l~g~~~~~~g~~~~---~~l~~~~~-~~~~~vl~iDEid~~~------~~~~~~Ll~~le~g~~~~~~g 576 (951)
..... ...+|......|.... ..+...+. ...+.||+|||++.+. ...+..|+..+++...
T Consensus 99 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~~~~~~~----- 173 (412)
T 1w5s_A 99 NLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPS----- 173 (412)
T ss_dssp SHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTHHHHSCC-----
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCcchHHHHHHHHHHHhccc-----
Confidence 32211 1122332221222111 12223333 3456899999999874 4777777777764110
Q ss_pred eEeec--CCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccC---hhHhhccCcEEEecCCChhhHHHHHHHHHH
Q psy14504 577 RTINF--RNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFR---PEFINRIDDIIVFRYLNRKNILSIANIQLN 651 (951)
Q Consensus 577 ~~~~~--~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~---p~l~~R~~~~i~f~~l~~~~~~~i~~~~l~ 651 (951)
+. .++.+|++|+...- ...+. +.+.+++...+.|+|++.+++.+++...+.
T Consensus 174 ---~~~~~~v~lI~~~~~~~~---------------------~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~ 229 (412)
T 1w5s_A 174 ---RDGVNRIGFLLVASDVRA---------------------LSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAE 229 (412)
T ss_dssp ---TTSCCBEEEEEEEEETHH---------------------HHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHH
T ss_pred ---CCCCceEEEEEEeccccH---------------------HHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHH
Confidence 01 45678878764221 01122 556666655699999999999999766553
Q ss_pred HHHHHHHhcCCccccchHHHHHHHHhc
Q psy14504 652 ILKNKLLKMNMDLKISKAALKKISNIG 678 (951)
Q Consensus 652 ~~~~~~~~~~~~l~~~~~~~~~L~~~~ 678 (951)
.. +....+++++++.+....
T Consensus 230 ~~-------~~~~~~~~~~~~~i~~~~ 249 (412)
T 1w5s_A 230 LG-------LRDTVWEPRHLELISDVY 249 (412)
T ss_dssp HH-------BCTTSCCHHHHHHHHHHH
T ss_pred hc-------CCCCCCChHHHHHHHHHH
Confidence 21 222457888888888754
No 185
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.87 E-value=2.2e-08 Score=111.29 Aligned_cols=180 Identities=16% Similarity=0.196 Sum_probs=110.7
Q ss_pred CCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh----c-----
Q psy14504 43 LDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL----A----- 113 (951)
Q Consensus 43 l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~----~----- 113 (951)
.+.++|++++++.+.. +.. +.++++||+|+|||++++.+++.+ ....+.+++.... .
T Consensus 12 ~~~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~ 77 (357)
T 2fna_A 12 RKDFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINEL----------NLPYIYLDLRKFEERNYISYKDF 77 (357)
T ss_dssp GGGSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHH----------TCCEEEEEGGGGTTCSCCCHHHH
T ss_pred HHHhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhc----------CCCEEEEEchhhccccCCCHHHH
Confidence 3578999999999998 765 588999999999999999999987 2234555554320 0
Q ss_pred --------------------------Cccccc---c------HHHHHHHHHHHHHhcC-CCeEEEEecccccccCCCCCC
Q psy14504 114 --------------------------GTKYRG---E------FEDRLKKILKEISNNQ-KDIIIFIDELHTMIGTGKVEG 157 (951)
Q Consensus 114 --------------------------~~~~~g---~------~~~~l~~~~~~a~~~~-~~~iL~iDEid~l~~~~~~~~ 157 (951)
+....+ . ....+..++..+.... ++.+|+|||+|.+....
T Consensus 78 ~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~---- 153 (357)
T 2fna_A 78 LLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLR---- 153 (357)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCT----
T ss_pred HHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccC----
Confidence 000000 0 0012344554444332 38999999999986521
Q ss_pred chhHHhhhhhhccC-CcEEEEEeecchHH-HHh---hhcCHHHhhcc-eEEEeeCCCHHHHHHHHHHHHHhhhhhcCCCC
Q psy14504 158 SIDAGNMLKPELSR-GELHCIGATTLNEY-RQY---IEKDAAFERRF-QKILVEEPDIEETISILRGLQKKYEVHHGVEI 231 (951)
Q Consensus 158 ~~~~~~~L~~~le~-~~i~vI~at~~~~~-~~~---~~~~~~l~~Rf-~~i~~~~p~~~er~~il~~~~~~~~~~~~~~i 231 (951)
+.+....|....+. ..+.+|.+++.... ... ......+..|+ ..+.+++++.++..++++...... +...
T Consensus 154 ~~~~~~~l~~~~~~~~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~----~~~~ 229 (357)
T 2fna_A 154 GVNLLPALAYAYDNLKRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEA----DIDF 229 (357)
T ss_dssp TCCCHHHHHHHHHHCTTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHH----TCCC
T ss_pred chhHHHHHHHHHHcCCCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHc----CCCC
Confidence 12333344444442 46788888876542 222 12233455566 469999999999999998765432 3333
Q ss_pred ChHHHHHHHHHhhhh
Q psy14504 232 TDPAIVAASELSYRY 246 (951)
Q Consensus 232 ~~~~l~~~~~~s~~~ 246 (951)
++. ..+...++++
T Consensus 230 ~~~--~~i~~~t~G~ 242 (357)
T 2fna_A 230 KDY--EVVYEKIGGI 242 (357)
T ss_dssp CCH--HHHHHHHCSC
T ss_pred CcH--HHHHHHhCCC
Confidence 333 5666666654
No 186
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.80 E-value=4.2e-08 Score=108.73 Aligned_cols=213 Identities=18% Similarity=0.132 Sum_probs=120.0
Q ss_pred CCCccccHHHHHHHHHHHHcCC-----CCCcEEEcCCCCcHHHHHHHH-HHHHHcCCCCCCcCCCeEEEEehh----hhh
Q psy14504 43 LDPVIGRDDEIRRAIQVLQRRS-----KNNPVLIGEPGVGKTAIVEGL-AQRIINGEVPNSLLSKKILLLDIA----LLL 112 (951)
Q Consensus 43 l~~lvG~~~~i~~l~~~l~~~~-----~~~iLL~GppGtGKTtla~~l-a~~l~~~~~~~~~~~~~~~~~~~~----~l~ 112 (951)
+.+++|++...+.+.-.+.... ..|+||.|+||| ||++|+++ ++.+ ....+..... .+.
T Consensus 212 IapI~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~----------pR~~ft~g~~ss~~gLt 280 (506)
T 3f8t_A 212 IAPLPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLA----------PRGVYVDLRRTELTDLT 280 (506)
T ss_dssp HCCSTTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTC----------SSEEEEEGGGCCHHHHS
T ss_pred hcccCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhC----------CCeEEecCCCCCccCce
Confidence 4448999997666666555442 238999999999 99999999 6643 1122221111 111
Q ss_pred cCccc-cccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC-----------cEEEEEee
Q psy14504 113 AGTKY-RGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG-----------ELHCIGAT 180 (951)
Q Consensus 113 ~~~~~-~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~-----------~i~vI~at 180 (951)
..... .| +... ...+..| + ..||||||++.+. ...+..|++.|+.+ ++.||+|+
T Consensus 281 ~s~r~~tG-~~~~-~G~l~LA---d-gGvl~lDEIn~~~--------~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~ 346 (506)
T 3f8t_A 281 AVLKEDRG-WALR-AGAAVLA---D-GGILAVDHLEGAP--------EPHRWALMEAMDKGTVTVDGIALNARCAVLAAI 346 (506)
T ss_dssp EEEEESSS-EEEE-ECHHHHT---T-TSEEEEECCTTCC--------HHHHHHHHHHHHHSEEEETTEEEECCCEEEEEE
T ss_pred EEEEcCCC-cccC-CCeeEEc---C-CCeeehHhhhhCC--------HHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEe
Confidence 00000 01 1000 0111112 2 3499999999984 36677888888754 47799999
Q ss_pred cchHHH------HhhhcCHHHhhcceE--EEeeCCCHHHHH---------HHHHHHHHhhh-hhcCCCCChHHHHHHHHH
Q psy14504 181 TLNEYR------QYIEKDAAFERRFQK--ILVEEPDIEETI---------SILRGLQKKYE-VHHGVEITDPAIVAASEL 242 (951)
Q Consensus 181 ~~~~~~------~~~~~~~~l~~Rf~~--i~~~~p~~~er~---------~il~~~~~~~~-~~~~~~i~~~~l~~~~~~ 242 (951)
|+.+.. ....+++++++||+. +.++.|+.++-. +.++.+..... ......+++++.++++.+
T Consensus 347 NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~ 426 (506)
T 3f8t_A 347 NPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHW 426 (506)
T ss_dssp CCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHH
T ss_pred CcccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHH
Confidence 986510 123789999999985 445666544321 22332222211 233567888887776654
Q ss_pred hhhh------------cccCCCchhHHHHHHHHHHHhHHhhc--CCchHHHH
Q psy14504 243 SYRY------------ISDRFMPDKAIDLIDEAAAKIKIEID--SKPEIMDK 280 (951)
Q Consensus 243 s~~~------------~~~~~~p~~a~~ll~~a~~~~~~~~~--~~~~~l~~ 280 (951)
...- ......|+....++..|-++++++.. ..|+++..
T Consensus 427 y~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~ 478 (506)
T 3f8t_A 427 YETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDI 478 (506)
T ss_dssp HHHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHH
Confidence 2211 23345677788888877777766543 44555543
No 187
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.77 E-value=7.9e-09 Score=98.99 Aligned_cols=92 Identities=17% Similarity=0.273 Sum_probs=65.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
.++|+||+|+|||+++++++..+...+...+.++..++... ..+ ..+.+|+|||+
T Consensus 38 ~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~-----------------------~~~--~~~~lLilDE~ 92 (149)
T 2kjq_A 38 FIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT-----------------------DAA--FEAEYLAVDQV 92 (149)
T ss_dssp EEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC-----------------------GGG--GGCSEEEEEST
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH-----------------------HHH--hCCCEEEEeCc
Confidence 68999999999999999999988655555777776654432 011 13479999999
Q ss_pred cccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhh
Q psy14504 552 EKANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 597 (951)
Q Consensus 552 d~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 597 (951)
+.+.+..+..|+.+++.-. .....++|+|||..+..+
T Consensus 93 ~~~~~~~~~~l~~li~~~~---------~~g~~~iiits~~~p~~l 129 (149)
T 2kjq_A 93 EKLGNEEQALLFSIFNRFR---------NSGKGFLLLGSEYTPQQL 129 (149)
T ss_dssp TCCCSHHHHHHHHHHHHHH---------HHTCCEEEEEESSCTTTS
T ss_pred cccChHHHHHHHHHHHHHH---------HcCCcEEEEECCCCHHHc
Confidence 9998777888888887411 111234777888766543
No 188
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.76 E-value=1.5e-08 Score=102.90 Aligned_cols=104 Identities=21% Similarity=0.248 Sum_probs=66.6
Q ss_pred chHHHHhcCCCCCccccHH----HHHHHHHHHHcCC----CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEE
Q psy14504 33 DLTEKARLGKLDPVIGRDD----EIRRAIQVLQRRS----KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKIL 104 (951)
Q Consensus 33 ~l~e~~rp~~l~~lvG~~~----~i~~l~~~l~~~~----~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~ 104 (951)
.+..++++.+|+++++.+. .++.+..++.... +.+++|+||||||||++|+++++.+... +..++
T Consensus 14 ~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~-------~~~~~ 86 (202)
T 2w58_A 14 FMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELAKR-------NVSSL 86 (202)
T ss_dssp SSCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHHTT-------TCCEE
T ss_pred CCCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHHHc-------CCeEE
Confidence 3456678899999997553 4555555655432 2789999999999999999999988543 45666
Q ss_pred EEehhhhhcCcc--c-cccHHHHHHHHHHHHHhcCCCeEEEEecccccc
Q psy14504 105 LLDIALLLAGTK--Y-RGEFEDRLKKILKEISNNQKDIIIFIDELHTMI 150 (951)
Q Consensus 105 ~~~~~~l~~~~~--~-~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~ 150 (951)
.+++..+..... + .+. +..++..+.. +.+|+|||++...
T Consensus 87 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~---~~~lilDei~~~~ 128 (202)
T 2w58_A 87 IVYVPELFRELKHSLQDQT----MNEKLDYIKK---VPVLMLDDLGAEA 128 (202)
T ss_dssp EEEHHHHHHHHHHC---CC----CHHHHHHHHH---SSEEEEEEECCC-
T ss_pred EEEhHHHHHHHHHHhccch----HHHHHHHhcC---CCEEEEcCCCCCc
Confidence 677655431100 0 011 1233334432 2399999997653
No 189
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.72 E-value=3.4e-09 Score=105.46 Aligned_cols=130 Identities=15% Similarity=0.182 Sum_probs=73.7
Q ss_pred HHHhcCCCCCcccc----HHHHHHHHHHHHc---CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 36 EKARLGKLDPVIGR----DDEIRRAIQVLQR---RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 36 e~~rp~~l~~lvG~----~~~i~~l~~~l~~---~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
++|++.+|+++++. ...++.+..++.. ....+++|+|||||||||++++++..+... .+..++.++.
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~------~g~~~~~~~~ 75 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEK------KGIRGYFFDT 75 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHH------SCCCCCEEEH
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHH------cCCeEEEEEH
Confidence 46889999999973 3455555555543 335679999999999999999999988411 1334444555
Q ss_pred hhhhcCccccccHHH-HHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhc----cCCcEEEEEeecch
Q psy14504 109 ALLLAGTKYRGEFED-RLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL----SRGELHCIGATTLN 183 (951)
Q Consensus 109 ~~l~~~~~~~g~~~~-~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l----e~~~i~vI~at~~~ 183 (951)
..+... ....... ....++..+. .+.+|+|||++.... +......|..++ +.+ ..+|.+||..
T Consensus 76 ~~~~~~--~~~~~~~~~~~~~~~~~~---~~~llilDE~~~~~~------~~~~~~~l~~ll~~~~~~~-~~ii~tsn~~ 143 (180)
T 3ec2_A 76 KDLIFR--LKHLMDEGKDTKFLKTVL---NSPVLVLDDLGSERL------SDWQRELISYIITYRYNNL-KSTIITTNYS 143 (180)
T ss_dssp HHHHHH--HHHHHHHTCCSHHHHHHH---TCSEEEEETCSSSCC------CHHHHHHHHHHHHHHHHTT-CEEEEECCCC
T ss_pred HHHHHH--HHHHhcCchHHHHHHHhc---CCCEEEEeCCCCCcC------CHHHHHHHHHHHHHHHHcC-CCEEEEcCCC
Confidence 444310 0000000 0012233332 355999999985421 112223343333 334 4566667654
No 190
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.71 E-value=5.5e-09 Score=106.11 Aligned_cols=107 Identities=19% Similarity=0.255 Sum_probs=67.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||||||||++|++++..+...+.+++.++++++...... .+. ......+...+... .+|||||+
T Consensus 56 ~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-------~~~~~~~~~~~~~~--~~lilDei 124 (202)
T 2w58_A 56 GLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKH--SLQ-------DQTMNEKLDYIKKV--PVLMLDDL 124 (202)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHH--C----------CCCHHHHHHHHHS--SEEEEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHH--Hhc-------cchHHHHHHHhcCC--CEEEEcCC
Confidence 79999999999999999999999777778888888765442111 000 00112233334433 59999999
Q ss_pred cccC--HHHHHHHH-HHhhcceeecCCCeEeecCCeEEEEecCCCchhhhh
Q psy14504 552 EKAN--SDVFNILL-QILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKE 599 (951)
Q Consensus 552 d~~~--~~~~~~Ll-~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~ 599 (951)
+... +..+..|+ .+++.. ...+..+|+|||.....+..
T Consensus 125 ~~~~~~~~~~~~ll~~~l~~~----------~~~~~~~i~tsn~~~~~l~~ 165 (202)
T 2w58_A 125 GAEAMSSWVRDDVFGPILQYR----------MFENLPTFFTSNFDMQQLAH 165 (202)
T ss_dssp CCC---CCGGGTTHHHHHHHH----------HHTTCCEEEEESSCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHH----------HhCCCCEEEEcCCCHHHHHH
Confidence 6644 33344344 355431 11234688999988776544
No 191
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=98.67 E-value=7.6e-08 Score=97.87 Aligned_cols=71 Identities=20% Similarity=0.331 Sum_probs=57.6
Q ss_pred ccccccccccchHHHHHHHHhhcccCCccceeecccccCCcce--------EehhHHHHHhcCCccEEEcCCChHHHHHH
Q psy14504 681 LIYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQ--------SLDTLRMVYSMRNYAKIVLGNHEIHLLDV 752 (951)
Q Consensus 681 ~~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~--------~~~~l~~~~~~~~~~~~v~GNHe~~~l~~ 752 (951)
..+.++|+|+.+..++++++.+... ..|.++++||++++|+. ..++++++.++...+.+|+||||..+..+
T Consensus 27 ki~~iSD~H~~~~~l~~~l~~~~~~-~~d~vi~~GDl~~~g~~~~~~~~~~~~~~~~~l~~~~~~v~~V~GNHD~~~~~~ 105 (208)
T 1su1_A 27 KLMFASDIHGSLPATERVLELFAQS-GAQWLVILGDVLNHGPRNALPEGYAPAKVVERLNEVAHKVIAVRGNCDSEVDQM 105 (208)
T ss_dssp EEEEECCCTTBHHHHHHHHHHHHHH-TCSEEEECSCCSCCCTTSCCCTTBCHHHHHHHHHTTGGGEEECCCTTCCHHHHH
T ss_pred EEEEEEcCCCCHHHHHHHHHHHHhc-CCCEEEECCCccccCcccccccccCHHHHHHHHHhcCCceEEEECCCchHHHHh
Confidence 3577999999999999999887643 34899999999999883 57788888877556889999999876544
No 192
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.61 E-value=2e-07 Score=103.02 Aligned_cols=176 Identities=9% Similarity=-0.006 Sum_probs=119.6
Q ss_pred HHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH---
Q psy14504 57 IQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS--- 133 (951)
Q Consensus 57 ~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~--- 133 (951)
...+..+-.+..||+||+|+||++.+..+++.+.+.+.. .+.++.++. . .+ ++.++..+.
T Consensus 10 ~~~l~~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~----~~~~~~~~~------~---~~----~~~l~~~~~~~p 72 (343)
T 1jr3_D 10 RAQLNEGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE----EHHTFSIDP------N---TD----WNAIFSLCQAMS 72 (343)
T ss_dssp HHHHHHCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC----EEEEEECCT------T---CC----HHHHHHHHHHHH
T ss_pred HHHHhcCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC----eeEEEEecC------C---CC----HHHHHHHhcCcC
Confidence 334444455667899999999999999999987532100 112232221 1 12 334444333
Q ss_pred hcCCCeEEEEecccc-cccCCCCCCchhHHhhhhhhccC--CcEEEEEeecchH-HHHhhhcCHHHhhcceEEEeeCCCH
Q psy14504 134 NNQKDIIIFIDELHT-MIGTGKVEGSIDAGNMLKPELSR--GELHCIGATTLNE-YRQYIEKDAAFERRFQKILVEEPDI 209 (951)
Q Consensus 134 ~~~~~~iL~iDEid~-l~~~~~~~~~~~~~~~L~~~le~--~~i~vI~at~~~~-~~~~~~~~~~l~~Rf~~i~~~~p~~ 209 (951)
-.++..|++|||+|. +. .+.++.|+.+++. ..+++|.+++..+ ..+...+.+++.+|+..+.|.+++.
T Consensus 73 lf~~~kvvii~~~~~kl~--------~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~~~~~l~~ 144 (343)
T 1jr3_D 73 LFASRQTLLLLLPENGPN--------AAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVTCQTPEQ 144 (343)
T ss_dssp HCCSCEEEEEECCSSCCC--------TTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEEEECCCCT
T ss_pred CccCCeEEEEECCCCCCC--------hHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEEEeeCCCH
Confidence 234567999999998 73 2566778888875 3455555554321 0001245678999999999999999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhhcccCCCchhHHHHHHHHHHHh
Q psy14504 210 EETISILRGLQKKYEVHHGVEITDPAIVAASELSYRYISDRFMPDKAIDLIDEAAAKI 267 (951)
Q Consensus 210 ~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~~~~~~~p~~a~~ll~~a~~~~ 267 (951)
.+....++..++. .++.++++++..++..+++.+ +.+.+.++..+...
T Consensus 145 ~~l~~~l~~~~~~----~g~~i~~~a~~~l~~~~~gdl------~~~~~elekl~l~~ 192 (343)
T 1jr3_D 145 AQLPRWVAARAKQ----LNLELDDAANQVLCYCYEGNL------LALAQALERLSLLW 192 (343)
T ss_dssp THHHHHHHHHHHH----TTCEECHHHHHHHHHSSTTCH------HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHH----cCCCCCHHHHHHHHHHhchHH------HHHHHHHHHHHHhc
Confidence 9999988887764 578999999999999988876 77888888776543
No 193
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.55 E-value=4.9e-08 Score=105.66 Aligned_cols=109 Identities=20% Similarity=0.235 Sum_probs=67.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhc-cCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEc
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 549 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iD 549 (951)
.+++|+||||||||++|++||..+. ..+.++..+.++++...... .+.. | . ...+...+... .+||||
T Consensus 153 ~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~--~~~~-----~-~-~~~~~~~~~~~--~lLiiD 221 (308)
T 2qgz_A 153 KGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKN--AISN-----G-S-VKEEIDAVKNV--PVLILD 221 (308)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHC--CCC-----------CCTTHHHHTS--SEEEEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHH--Hhcc-----c-h-HHHHHHHhcCC--CEEEEc
Confidence 3799999999999999999999997 77778888887766442111 0110 0 0 11122334433 599999
Q ss_pred cccc--cCHHHHHHHH-HHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhh
Q psy14504 550 EIEK--ANSDVFNILL-QILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEM 600 (951)
Q Consensus 550 Eid~--~~~~~~~~Ll-~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~ 600 (951)
|++. +++..++.|+ .+++.. ...+..+|+|||..+..+...
T Consensus 222 dig~~~~~~~~~~~ll~~ll~~r----------~~~~~~~IitSN~~~~~l~~~ 265 (308)
T 2qgz_A 222 DIGAEQATSWVRDEVLQVILQYR----------MLEELPTFFTSNYSFADLERK 265 (308)
T ss_dssp TCCC------CTTTTHHHHHHHH----------HHHTCCEEEEESSCHHHHHTT
T ss_pred CCCCCCCCHHHHHHHHHHHHHHH----------HHCCCcEEEECCCCHHHHHHH
Confidence 9954 4444454343 366531 012345899999988776553
No 194
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.54 E-value=6.2e-07 Score=98.99 Aligned_cols=147 Identities=11% Similarity=0.102 Sum_probs=102.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCC-ceEEeccccccchhchhcccCCCCCCccccccchhHHHHH----hCCCeEE
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEE-SIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVR----RKPYSLI 546 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~-~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~----~~~~~vl 546 (951)
.+||+||+|+||++.++.+++.+...+. ++..+... |..+.+.+.+.+. .+...|+
T Consensus 20 ~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-------------------~~~~~~~l~~~~~~~plf~~~kvv 80 (343)
T 1jr3_D 20 AYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSID-------------------PNTDWNAIFSLCQAMSLFASRQTL 80 (343)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECC-------------------TTCCHHHHHHHHHHHHHCCSCEEE
T ss_pred EEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEec-------------------CCCCHHHHHHHhcCcCCccCCeEE
Confidence 6999999999999999999998753221 11111110 1111223333332 2457899
Q ss_pred EEccccc-cCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCC-CchhhhhhccccHHHHHHHHHHHHHhccChhH
Q psy14504 547 LLDEIEK-ANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNL-GSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEF 624 (951)
Q Consensus 547 ~iDEid~-~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~-~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l 624 (951)
+|||++. ++...++.|++.+++ +..++++|++++. ....- ...+.+.+
T Consensus 81 ii~~~~~kl~~~~~~aLl~~le~-----------p~~~~~~il~~~~~~~~~~-------------------~~k~~~~i 130 (343)
T 1jr3_D 81 LLLLPENGPNAAINEQLLTLTGL-----------LHDDLLLIVRGNKLSKAQE-------------------NAAWFTAL 130 (343)
T ss_dssp EEECCSSCCCTTHHHHHHHHHTT-----------CBTTEEEEEEESCCCTTTT-------------------TSHHHHHH
T ss_pred EEECCCCCCChHHHHHHHHHHhc-----------CCCCeEEEEEcCCCChhhH-------------------hhHHHHHH
Confidence 9999999 999999999999997 5567777777654 22100 12345678
Q ss_pred hhccCcEEEecCCChhhHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHHh
Q psy14504 625 INRIDDIIVFRYLNRKNILSIANIQLNILKNKLLKMNMDLKISKAALKKISNI 677 (951)
Q Consensus 625 ~~R~~~~i~f~~l~~~~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~~ 677 (951)
.+|+ .++.|.+++.+++.+.+...+ ...| +.++++++++|+..
T Consensus 131 ~sr~-~~~~~~~l~~~~l~~~l~~~~-------~~~g--~~i~~~a~~~l~~~ 173 (343)
T 1jr3_D 131 ANRS-VQVTCQTPEQAQLPRWVAARA-------KQLN--LELDDAANQVLCYC 173 (343)
T ss_dssp TTTC-EEEEECCCCTTHHHHHHHHHH-------HHTT--CEECHHHHHHHHHS
T ss_pred HhCc-eEEEeeCCCHHHHHHHHHHHH-------HHcC--CCCCHHHHHHHHHH
Confidence 8999 699999999999998855444 4455 78999999999984
No 195
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.50 E-value=8e-08 Score=103.98 Aligned_cols=104 Identities=14% Similarity=0.275 Sum_probs=63.7
Q ss_pred hHHHHhcCCCCCccccH----HHHHHHHHHHHcC---CCCCcEEEcCCCCcHHHHHHHHHHHHH-cCCCCCCcCCCeEEE
Q psy14504 34 LTEKARLGKLDPVIGRD----DEIRRAIQVLQRR---SKNNPVLIGEPGVGKTAIVEGLAQRII-NGEVPNSLLSKKILL 105 (951)
Q Consensus 34 l~e~~rp~~l~~lvG~~----~~i~~l~~~l~~~---~~~~iLL~GppGtGKTtla~~la~~l~-~~~~~~~~~~~~~~~ 105 (951)
+...+++.+|+++++.+ ..+..+..++... ...+++|+||||||||+||.++|+.+. .. +..++.
T Consensus 114 l~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~-------g~~v~~ 186 (308)
T 2qgz_A 114 LPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKK-------GVSTTL 186 (308)
T ss_dssp SCGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHS-------CCCEEE
T ss_pred CCHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhc-------CCcEEE
Confidence 44455678999998643 3445555566542 257899999999999999999999886 43 456766
Q ss_pred EehhhhhcCccc-cccHHHHHHHHHHHHHhcCCCeEEEEeccccc
Q psy14504 106 LDIALLLAGTKY-RGEFEDRLKKILKEISNNQKDIIIFIDELHTM 149 (951)
Q Consensus 106 ~~~~~l~~~~~~-~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l 149 (951)
++...+...... .. ...+...+..+.. ..+|||||++..
T Consensus 187 ~~~~~l~~~l~~~~~--~~~~~~~~~~~~~---~~lLiiDdig~~ 226 (308)
T 2qgz_A 187 LHFPSFAIDVKNAIS--NGSVKEEIDAVKN---VPVLILDDIGAE 226 (308)
T ss_dssp EEHHHHHHHHHCCCC------CCTTHHHHT---SSEEEEETCCC-
T ss_pred EEHHHHHHHHHHHhc--cchHHHHHHHhcC---CCEEEEcCCCCC
Confidence 776554310000 00 0011223333332 239999999754
No 196
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.49 E-value=1.5e-07 Score=92.87 Aligned_cols=122 Identities=13% Similarity=0.119 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHcCC-CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHH
Q psy14504 51 DEIRRAIQVLQRRS-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKIL 129 (951)
Q Consensus 51 ~~i~~l~~~l~~~~-~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~ 129 (951)
.-+..+..++...+ .+++||+||||||||++|.++|+.+ ...++...- .. ..+ .+
T Consensus 43 ~f~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l----------~g~i~~fan------s~--s~f------~l 98 (212)
T 1tue_A 43 TFLGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFI----------QGAVISFVN------ST--SHF------WL 98 (212)
T ss_dssp HHHHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHH----------TCEECCCCC------SS--SCG------GG
T ss_pred HHHHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHh----------CCCeeeEEe------cc--chh------hh
Confidence 34555666665532 3469999999999999999999988 222321110 00 000 01
Q ss_pred HHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCC---------------cEEEEEeecchHHHHhhhcCHH
Q psy14504 130 KEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRG---------------ELHCIGATTLNEYRQYIEKDAA 194 (951)
Q Consensus 130 ~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~---------------~i~vI~at~~~~~~~~~~~~~~ 194 (951)
..+. +..|++|||++.-.. ......++..++.. ...+|.|||.+-.. ...-+.
T Consensus 99 ~~l~---~~kIiiLDEad~~~~-------~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~--~~~~~~ 166 (212)
T 1tue_A 99 EPLT---DTKVAMLDDATTTCW-------TYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAK--DNRWPY 166 (212)
T ss_dssp GGGT---TCSSEEEEEECHHHH-------HHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTS--SSSCHH
T ss_pred cccC---CCCEEEEECCCchhH-------HHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCccc--ccchhh
Confidence 1111 123899999974211 12223455555432 34678888874311 133468
Q ss_pred HhhcceEEEeeCCC
Q psy14504 195 FERRFQKILVEEPD 208 (951)
Q Consensus 195 l~~Rf~~i~~~~p~ 208 (951)
|.+|+..+.|+.|-
T Consensus 167 L~SRi~~f~F~~~~ 180 (212)
T 1tue_A 167 LESRITVFEFPNAF 180 (212)
T ss_dssp HHTSCEEEECCSCC
T ss_pred hhhhEEEEEcCCCC
Confidence 99999988888653
No 197
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.49 E-value=1.5e-07 Score=90.12 Aligned_cols=106 Identities=11% Similarity=0.140 Sum_probs=64.8
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEE
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFI 143 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~i 143 (951)
....++|+||+|+|||||+++++..+.. .+..++.++...+... .+ + ..+.+|+|
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~-------~g~~~~~~~~~~~~~~------------~~---~---~~~~lLil 89 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALE-------AGKNAAYIDAASMPLT------------DA---A---FEAEYLAV 89 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHT-------TTCCEEEEETTTSCCC------------GG---G---GGCSEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHh-------cCCcEEEEcHHHhhHH------------HH---H---hCCCEEEE
Confidence 4567899999999999999999998853 1445666666544311 00 1 13559999
Q ss_pred ecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecc-hHHHHhhhcCHHHhhcceE
Q psy14504 144 DELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTL-NEYRQYIEKDAAFERRFQK 201 (951)
Q Consensus 144 DEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~-~~~~~~~~~~~~l~~Rf~~ 201 (951)
||++.+.... .......+....+++..++|.+++. +. .+... +.+.+||..
T Consensus 90 DE~~~~~~~~----~~~l~~li~~~~~~g~~~iiits~~~p~--~l~~~-~~L~SRl~~ 141 (149)
T 2kjq_A 90 DQVEKLGNEE----QALLFSIFNRFRNSGKGFLLLGSEYTPQ--QLVIR-EDLRTRMAY 141 (149)
T ss_dssp ESTTCCCSHH----HHHHHHHHHHHHHHTCCEEEEEESSCTT--TSSCC-HHHHHHGGG
T ss_pred eCccccChHH----HHHHHHHHHHHHHcCCcEEEEECCCCHH--Hcccc-HHHHHHHhc
Confidence 9999864311 1223334444445555434445553 32 12233 899999963
No 198
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=98.43 E-value=2.5e-07 Score=91.38 Aligned_cols=61 Identities=21% Similarity=0.104 Sum_probs=46.7
Q ss_pred cccccccccc--chHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHH
Q psy14504 681 LIYGARDVHG--CKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIH 748 (951)
Q Consensus 681 ~~~g~~dlhg--~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~ 748 (951)
....++|+|+ ....+.+.++.+. ...|.++++||+++. ++++++.++...+.+|+||||..
T Consensus 24 ri~~iSD~Hg~~~~~~l~~~l~~~~--~~~D~ii~~GD~~~~-----~~~~~l~~~~~~v~~V~GNhD~~ 86 (178)
T 2kkn_A 24 RFLLISDSHVPVRMASLPDEILNSL--KEYDGVIGLGDYVDL-----DTVILLEKFSKEFYGVHGNMDYP 86 (178)
T ss_dssp EEEEECCCCBTTTTCCCCHHHHHGG--GGCSEEEESSCBSCH-----HHHHHHHHHTSSEEECCCSSSCG
T ss_pred EEEEEecccCCCCHHHHHHHHHHHh--cCCCEEEECCCCCCH-----HHHHHHHhcCCCEEEEECCCCcH
Confidence 3567899996 5555677776654 356899999999973 68888887754588999999954
No 199
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.42 E-value=3e-06 Score=93.51 Aligned_cols=183 Identities=13% Similarity=0.188 Sum_probs=106.3
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc------chh
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI------EKH 513 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~------~~~ 513 (951)
..++|.+..++.+...+... ..++++||+|+|||++++.+++.. + .+.+++.... ...
T Consensus 12 ~~~~gR~~el~~L~~~l~~~-----------~~v~i~G~~G~GKT~Ll~~~~~~~---~--~~~~~~~~~~~~~~~~~~~ 75 (350)
T 2qen_A 12 EDIFDREEESRKLEESLENY-----------PLTLLLGIRRVGKSSLLRAFLNER---P--GILIDCRELYAERGHITRE 75 (350)
T ss_dssp GGSCSCHHHHHHHHHHHHHC-----------SEEEEECCTTSSHHHHHHHHHHHS---S--EEEEEHHHHHHTTTCBCHH
T ss_pred HhcCChHHHHHHHHHHHhcC-----------CeEEEECCCcCCHHHHHHHHHHHc---C--cEEEEeecccccccCCCHH
Confidence 45789999999998887641 269999999999999999999876 2 6666665432 110
Q ss_pred c----hhcccCC-----------------CCCCccccccchhHHHH----HhCCCeEEEEccccccC-------HHHHHH
Q psy14504 514 S----ISRLIGA-----------------PPGYIGYEEGGYLTEIV----RRKPYSLILLDEIEKAN-------SDVFNI 561 (951)
Q Consensus 514 ~----~~~l~g~-----------------~~~~~g~~~~~~l~~~~----~~~~~~vl~iDEid~~~-------~~~~~~ 561 (951)
. ....++. .... .......+...+ ....+.+|+|||++.+. +.....
T Consensus 76 ~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~ 154 (350)
T 2qen_A 76 ELIKELQSTISPFQKFQSKFKISLNLKFLTLEP-RKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLAL 154 (350)
T ss_dssp HHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCG-GGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHH
T ss_pred HHHHHHHHHHHHHHhHhhhceeEEEecceeecc-ccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHH
Confidence 0 0111110 0000 001111222222 22237899999999875 466666
Q ss_pred HHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHH-hccChhHhhccCcEEEecCCChh
Q psy14504 562 LLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVK-IYFRPEFINRIDDIIVFRYLNRK 640 (951)
Q Consensus 562 Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~p~l~~R~~~~i~f~~l~~~ 640 (951)
|..+++. ..++.+|+|+..... +. +.+. .....++.+|....+.+.|++.+
T Consensus 155 L~~~~~~------------~~~~~~il~g~~~~~-l~---------------~~l~~~~~~~~l~~~~~~~i~l~pl~~~ 206 (350)
T 2qen_A 155 FAYAYDS------------LPNLKIILTGSEVGL-LH---------------DFLKITDYESPLYGRIAGEVLVKPFDKD 206 (350)
T ss_dssp HHHHHHH------------CTTEEEEEEESSHHH-HH---------------HHHCTTCTTSTTTTCCCEEEECCCCCHH
T ss_pred HHHHHHh------------cCCeEEEEECCcHHH-HH---------------HHHhhcCCCCccccCccceeeCCCCCHH
Confidence 6666653 135667777653110 00 0000 11233466677668999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhcCCccccchHHHHHHHH
Q psy14504 641 NILSIANIQLNILKNKLLKMNMDLKISKAALKKISN 676 (951)
Q Consensus 641 ~~~~i~~~~l~~~~~~~~~~~~~l~~~~~~~~~L~~ 676 (951)
+..+++...+ ...+ ..++++++..+..
T Consensus 207 e~~~~l~~~~-------~~~~--~~~~~~~~~~i~~ 233 (350)
T 2qen_A 207 TSVEFLKRGF-------REVN--LDVPENEIEEAVE 233 (350)
T ss_dssp HHHHHHHHHH-------HTTT--CCCCHHHHHHHHH
T ss_pred HHHHHHHHHH-------HHcC--CCCCHHHHHHHHH
Confidence 9998865433 2223 3456666666654
No 200
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.38 E-value=8.3e-07 Score=88.97 Aligned_cols=130 Identities=14% Similarity=0.101 Sum_probs=72.2
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCC-CeEEEEehhhhhcCcc-----------cccc--HHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLS-KKILLLDIALLLAGTK-----------YRGE--FEDRLKKILKEI 132 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~-~~~~~~~~~~l~~~~~-----------~~g~--~~~~l~~~~~~a 132 (951)
-.|++|+||||||++|..++.....-+ +. -.+ .+++..++..+..+.. ..++ ....+..++..+
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~-~~-~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFK-PD-ENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGS-CC-TTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhc-cc-ccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcc
Confidence 458899999999999988765432000 00 113 4454444443321110 0000 111222222111
Q ss_pred HhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc---CCcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCC
Q psy14504 133 SNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPD 208 (951)
Q Consensus 133 ~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le---~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~ 208 (951)
.+.++||+|||++.+.+.+... .+... ++..++ ...+.+|.+|+++. .++.++++|+.. +.+..|.
T Consensus 85 --~~~~~vliIDEAq~l~~~~~~~--~e~~r-ll~~l~~~r~~~~~iil~tq~~~-----~l~~~lr~ri~~~~~l~~~~ 154 (199)
T 2r2a_A 85 --ENIGSIVIVDEAQDVWPARSAG--SKIPE-NVQWLNTHRHQGIDIFVLTQGPK-----LLDQNLRTLVRKHYHIASNK 154 (199)
T ss_dssp --GGTTCEEEETTGGGTSBCCCTT--CCCCH-HHHGGGGTTTTTCEEEEEESCGG-----GBCHHHHTTEEEEEEEEECS
T ss_pred --ccCceEEEEEChhhhccCcccc--chhHH-HHHHHHhcCcCCeEEEEECCCHH-----HHhHHHHHHhheEEEEcCcc
Confidence 2346799999999997654211 11111 222232 34567888888877 899999999986 8887764
No 201
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.35 E-value=1.2e-06 Score=90.89 Aligned_cols=133 Identities=11% Similarity=0.183 Sum_probs=76.1
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCC-eEEEEc
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPY-SLILLD 549 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~-~vl~iD 549 (951)
.+++|+||||||||++|++||+.+. . ...++.+ .. . . .+..... .|++.|
T Consensus 105 n~~~l~GppgtGKt~~a~ala~~~~---l-~G~vn~~---~~----~-------f-----------~l~~~~~k~i~l~E 155 (267)
T 1u0j_A 105 NTIWLFGPATTGKTNIAEAIAHTVP---F-YGCVNWT---NE----N-------F-----------PFNDCVDKMVIWWE 155 (267)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSS---C-EEECCTT---CS----S-------C-----------TTGGGSSCSEEEEC
T ss_pred cEEEEECCCCCCHHHHHHHHHhhhc---c-cceeecc---cc----c-------c-----------ccccccccEEEEec
Confidence 3699999999999999999999751 0 1111111 10 0 0 0111122 355555
Q ss_pred cccccCHHHHHHHHHHhhcceeecC-C-CeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhc
Q psy14504 550 EIEKANSDVFNILLQILDDGRLTDN-R-GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINR 627 (951)
Q Consensus 550 Eid~~~~~~~~~Ll~~le~g~~~~~-~-g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R 627 (951)
|.. +..+.++.+-.+++.+.+... . ........+-+|+|||............ .....+.|.+|
T Consensus 156 e~~-~~~d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~-------------s~~~~~~L~sR 221 (267)
T 1u0j_A 156 EGK-MTAKVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNST-------------TFEHQQPLQDR 221 (267)
T ss_dssp SCC-EETTTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEE-------------ECTTHHHHHTT
T ss_pred ccc-chhHHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCcc-------------chhhhHHHhhh
Confidence 554 444566677778875544422 1 1123446677899999854321100000 00123568899
Q ss_pred cCcEEEec--------CCChhhHHHHHH
Q psy14504 628 IDDIIVFR--------YLNRKNILSIAN 647 (951)
Q Consensus 628 ~~~~i~f~--------~l~~~~~~~i~~ 647 (951)
+ .++.|. +++.++....+.
T Consensus 222 ~-~~f~F~~~~p~~~~~lt~~~~~~f~~ 248 (267)
T 1u0j_A 222 M-FKFELTRRLDHDFGKVTKQEVKDFFR 248 (267)
T ss_dssp E-EEEECCSCCCTTSCCCCHHHHHHHHH
T ss_pred E-EEEECCCcCCcccCCCCHHHHHHHHH
Confidence 9 789998 888999888855
No 202
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=98.33 E-value=3.3e-06 Score=84.26 Aligned_cols=63 Identities=13% Similarity=0.125 Sum_probs=51.3
Q ss_pred cccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHH
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLL 750 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l 750 (951)
..-++|+|+.+..++++++.+.. ...|.++++||+++. ++++++.+++..+.+|+||||....
T Consensus 28 i~~iSD~Hg~~~~l~~~l~~~~~-~~~D~ii~~GDl~~~-----~~~~~l~~l~~~~~~V~GNhD~~~~ 90 (190)
T 1s3l_A 28 IGIMSDTHDHLPNIRKAIEIFND-ENVETVIHCGDFVSL-----FVIKEFENLNANIIATYGNNDGERC 90 (190)
T ss_dssp EEEECCCTTCHHHHHHHHHHHHH-SCCSEEEECSCCCST-----HHHHHGGGCSSEEEEECCTTCCCHH
T ss_pred EEEEeeCCCCHHHHHHHHHHHhh-cCCCEEEECCCCCCH-----HHHHHHHhcCCCEEEEeCCCcchHH
Confidence 46689999999999999988763 356899999999874 5788887765568899999997654
No 203
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.26 E-value=4.4e-06 Score=82.50 Aligned_cols=116 Identities=20% Similarity=0.336 Sum_probs=64.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDEI 551 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDEi 551 (951)
+++|+||||||||++|.+||+.+.+ .++.+ .+..+ . .....+ ....|++|||+
T Consensus 60 ~ili~GPPGtGKTt~a~ala~~l~g---~i~~f-----ans~s--~---------------f~l~~l--~~~kIiiLDEa 112 (212)
T 1tue_A 60 CLVFCGPANTGKSYFGMSFIHFIQG---AVISF-----VNSTS--H---------------FWLEPL--TDTKVAMLDDA 112 (212)
T ss_dssp EEEEESCGGGCHHHHHHHHHHHHTC---EECCC-----CCSSS--C---------------GGGGGG--TTCSSEEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC---CeeeE-----Eeccc--h---------------hhhccc--CCCCEEEEECC
Confidence 6999999999999999999999832 22111 11000 0 000001 11359999999
Q ss_pred cccCHHH-HHHHHHHhhcceee-cCC-CeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHhccChhHhhcc
Q psy14504 552 EKANSDV-FNILLQILDDGRLT-DNR-GRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKIYFRPEFINRI 628 (951)
Q Consensus 552 d~~~~~~-~~~Ll~~le~g~~~-~~~-g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~p~l~~R~ 628 (951)
+....+. ...+..+|+...+. |.. -..+.....-+|+|||.....- ..+ +.+.+|+
T Consensus 113 d~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~--------------------~~~-~~L~SRi 171 (212)
T 1tue_A 113 TTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKD--------------------NRW-PYLESRI 171 (212)
T ss_dssp CHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSS--------------------SSC-HHHHTSC
T ss_pred CchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccc--------------------cch-hhhhhhE
Confidence 8654333 34566667643222 111 1111223346889999865421 112 5688999
Q ss_pred CcEEEecC
Q psy14504 629 DDIIVFRY 636 (951)
Q Consensus 629 ~~~i~f~~ 636 (951)
..+.|+.
T Consensus 172 -~~f~F~~ 178 (212)
T 1tue_A 172 -TVFEFPN 178 (212)
T ss_dssp -EEEECCS
T ss_pred -EEEEcCC
Confidence 5777774
No 204
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.26 E-value=3.5e-06 Score=87.47 Aligned_cols=126 Identities=16% Similarity=0.204 Sum_probs=74.2
Q ss_pred HHHHHHcC-C-CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHH
Q psy14504 56 AIQVLQRR-S-KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEIS 133 (951)
Q Consensus 56 l~~~l~~~-~-~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~ 133 (951)
+..++... . +++++|+||||||||++|.++|+.+ .. .-.++.+. ... .+..+
T Consensus 93 l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~----------~l-~G~vn~~~----~~f----------~l~~~- 146 (267)
T 1u0j_A 93 FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTV----------PF-YGCVNWTN----ENF----------PFNDC- 146 (267)
T ss_dssp HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHS----------SC-EEECCTTC----SSC----------TTGGG-
T ss_pred HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhh----------cc-cceeeccc----ccc----------ccccc-
Confidence 34455544 3 4579999999999999999999974 11 01111110 000 11221
Q ss_pred hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhcc--------C-------CcEEEEEeecchHHH------HhhhcC
Q psy14504 134 NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELS--------R-------GELHCIGATTLNEYR------QYIEKD 192 (951)
Q Consensus 134 ~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le--------~-------~~i~vI~at~~~~~~------~~~~~~ 192 (951)
..+.|++.||.... . ++.+.++.+++ . ....+|.+||..... ......
T Consensus 147 --~~k~i~l~Ee~~~~-~--------d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~ 215 (267)
T 1u0j_A 147 --VDKMVIWWEEGKMT-A--------KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQ 215 (267)
T ss_dssp --SSCSEEEECSCCEE-T--------TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTH
T ss_pred --cccEEEEeccccch-h--------HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhh
Confidence 22346677777654 1 33334555554 1 245678888873311 001345
Q ss_pred HHHhhcceEEEee--------CCCHHHHHHHHHH
Q psy14504 193 AAFERRFQKILVE--------EPDIEETISILRG 218 (951)
Q Consensus 193 ~~l~~Rf~~i~~~--------~p~~~er~~il~~ 218 (951)
++|.+|+..+.|. +.+.++....++.
T Consensus 216 ~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~w 249 (267)
T 1u0j_A 216 QPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFRW 249 (267)
T ss_dssp HHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHHH
T ss_pred HHHhhhEEEEECCCcCCcccCCCCHHHHHHHHHH
Confidence 7899999999998 6778888777763
No 205
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.22 E-value=6.9e-06 Score=90.84 Aligned_cols=167 Identities=14% Similarity=0.173 Sum_probs=96.6
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc-----cchhc
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF-----IEKHS 514 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~-----~~~~~ 514 (951)
..++|.+..++.+.. +.. +.++++||+|+|||++++.+++.+ ....+.+++... .....
T Consensus 13 ~~~~gR~~el~~L~~-l~~------------~~v~i~G~~G~GKT~L~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 76 (357)
T 2fna_A 13 KDFFDREKEIEKLKG-LRA------------PITLVLGLRRTGKSSIIKIGINEL---NLPYIYLDLRKFEERNYISYKD 76 (357)
T ss_dssp GGSCCCHHHHHHHHH-TCS------------SEEEEEESTTSSHHHHHHHHHHHH---TCCEEEEEGGGGTTCSCCCHHH
T ss_pred HHhcChHHHHHHHHH-hcC------------CcEEEECCCCCCHHHHHHHHHHhc---CCCEEEEEchhhccccCCCHHH
Confidence 457788888887776 532 269999999999999999999887 334677776643 11000
Q ss_pred h----h--------------cccCCC----CCCcc---------ccccchhHHHHHhC--CCeEEEEccccccCH----H
Q psy14504 515 I----S--------------RLIGAP----PGYIG---------YEEGGYLTEIVRRK--PYSLILLDEIEKANS----D 557 (951)
Q Consensus 515 ~----~--------------~l~g~~----~~~~g---------~~~~~~l~~~~~~~--~~~vl~iDEid~~~~----~ 557 (951)
. . ..++.. .+..+ ...-..+...+... .+.+|+|||++.+.. +
T Consensus 77 ~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~~ 156 (357)
T 2fna_A 77 FLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGVN 156 (357)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTCC
T ss_pred HHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCchh
Confidence 0 0 011110 00000 01112233344332 378999999998753 4
Q ss_pred HHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHH-hccChhHhhccCcEEEecC
Q psy14504 558 VFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVK-IYFRPEFINRIDDIIVFRY 636 (951)
Q Consensus 558 ~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~p~l~~R~~~~i~f~~ 636 (951)
....|..+++. ..++.+|+|+.... .+.+ .+. ......+.+|....+.+.|
T Consensus 157 ~~~~l~~~~~~------------~~~~~~i~~g~~~~-~l~~---------------~l~~~~~~~~l~~r~~~~i~l~~ 208 (357)
T 2fna_A 157 LLPALAYAYDN------------LKRIKFIMSGSEMG-LLYD---------------YLRVEDPESPLFGRAFSTVELKP 208 (357)
T ss_dssp CHHHHHHHHHH------------CTTEEEEEEESSHH-HHHH---------------HTTTTCTTSTTTTCCCEEEEECC
T ss_pred HHHHHHHHHHc------------CCCeEEEEEcCchH-HHHH---------------HHhccCCCCccccCccceeecCC
Confidence 55555555543 13566777776421 0000 000 1122346677767899999
Q ss_pred CChhhHHHHHHHHH
Q psy14504 637 LNRKNILSIANIQL 650 (951)
Q Consensus 637 l~~~~~~~i~~~~l 650 (951)
++.++..+++...+
T Consensus 209 l~~~e~~~~l~~~~ 222 (357)
T 2fna_A 209 FSREEAIEFLRRGF 222 (357)
T ss_dssp CCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 99999999876544
No 206
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=98.20 E-value=5.1e-06 Score=85.51 Aligned_cols=69 Identities=16% Similarity=0.242 Sum_probs=50.3
Q ss_pred cccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEe---hhHHHHHhcCCccEEEcCCChHHHHH
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSL---DTLRMVYSMRNYAKIVLGNHEIHLLD 751 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~---~~l~~~~~~~~~~~~v~GNHe~~~l~ 751 (951)
..-++|+|+....++++++.+.-. ..|.++++||++++++... ++++.+.+++..+.+|+||||....+
T Consensus 8 i~~iSD~H~~~~~~~~~~~~~~~~-~~D~vi~~GDl~~~~~~~~~~~~~~~~l~~~~~pv~~v~GNHD~~~~~ 79 (228)
T 1uf3_A 8 ILATSNPMGDLEALEKFVKLAPDT-GADAIALIGNLMPKAAKSRDYAAFFRILSEAHLPTAYVPGPQDAPIWE 79 (228)
T ss_dssp EEEEECCTTCHHHHHHHHTHHHHH-TCSEEEEESCSSCTTCCHHHHHHHHHHHGGGCSCEEEECCTTSCSHHH
T ss_pred EEEEeeccCCHHHHHHHHHHHhhc-CCCEEEECCCCCCCCCCHHHHHHHHHHHHhcCCcEEEECCCCCchhHH
Confidence 356899999988888888766532 4588999999999985433 35555554443588999999976543
No 207
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.18 E-value=3.9e-06 Score=96.29 Aligned_cols=62 Identities=13% Similarity=0.318 Sum_probs=43.9
Q ss_pred hhcchHHHHhcCCCCCcc-ccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcC
Q psy14504 30 YTIDLTEKARLGKLDPVI-GRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIING 92 (951)
Q Consensus 30 ~~~~l~e~~rp~~l~~lv-G~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~ 92 (951)
-..+|.++|||.+|+++- +|...+..+...+.... .++++.|+||||||+++.+++..+...
T Consensus 10 ~~~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~-~~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 10 HSSGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKK-HHVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp -----------CCSSCCCHHHHHHHHHHHHHHHSSS-CEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred ccCCCccccCCCccccCCHHHHHHHHHHHHHHhcCC-CEEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 457899999999999997 78888888888777654 489999999999999999999988654
No 208
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.15 E-value=5.4e-06 Score=81.69 Aligned_cols=23 Identities=43% Similarity=0.907 Sum_probs=21.2
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.+.|+||+|+|||||++.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46899999999999999999987
No 209
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.05 E-value=3.2e-06 Score=89.79 Aligned_cols=105 Identities=21% Similarity=0.311 Sum_probs=57.8
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEec
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDE 145 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDE 145 (951)
..++|+||||||||+||.++|... .. .+-++........ ..+..+.+..+..+.+.+.+. + +||||+
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~-G~-------~VlyIs~~~eE~v--~~~~~~le~~l~~i~~~l~~~--~-LLVIDs 190 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEAL-GG-------KDKYATVRFGEPL--SGYNTDFNVFVDDIARAMLQH--R-VIVIDS 190 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHH-HT-------TSCCEEEEBSCSS--TTCBCCHHHHHHHHHHHHHHC--S-EEEEEC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhC-CC-------CEEEEEecchhhh--hhhhcCHHHHHHHHHHHHhhC--C-EEEEec
Confidence 346899999999999999999862 11 2233433111111 112244555566666666533 3 999999
Q ss_pred ccccccCCCCC---C--chhHHh---hhhhhccCCcEEEEEeecch
Q psy14504 146 LHTMIGTGKVE---G--SIDAGN---MLKPELSRGELHCIGATTLN 183 (951)
Q Consensus 146 id~l~~~~~~~---~--~~~~~~---~L~~~le~~~i~vI~at~~~ 183 (951)
++.+....... + .+.... .|...+....+.+|+++|+.
T Consensus 191 I~aL~~~~~~~s~~G~v~~~lrqlL~~L~~~~k~~gvtVIlttnp~ 236 (331)
T 2vhj_A 191 LKNVIGAAGGNTTSGGISRGAFDLLSDIGAMAASRGCVVIASLNPT 236 (331)
T ss_dssp CTTTC-----------CCHHHHHHHHHHHHHHHHHTCEEEEECCCS
T ss_pred ccccccccccccccchHHHHHHHHHHHHHHHHhhCCCEEEEEeCCc
Confidence 99986533220 0 111222 23333344456778887754
No 210
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=98.03 E-value=3.2e-06 Score=86.31 Aligned_cols=90 Identities=12% Similarity=0.131 Sum_probs=58.1
Q ss_pred cccccccccchHH--HHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHHHHHhhcccC
Q psy14504 682 IYGARDVHGCKKS--LSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLLDVLININKK 759 (951)
Q Consensus 682 ~~g~~dlhg~~~~--l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l~~~~~~~~~ 759 (951)
...++|+|+.... +.+.+.++--....|.++++||+++ .++++++.++...+.+|+||||.....+
T Consensus 28 i~~iSD~H~~~~~~~l~~~l~~~~~~~~~D~vi~~GDl~~-----~~~l~~l~~~~~~v~~V~GNHD~~~~~~------- 95 (215)
T 2a22_A 28 VLLIGDLKIPYGAKELPSNFRELLATDKINYVLCTGNVCS-----QEYVEMLKNITKNVYIVSGDLDSAIFNP------- 95 (215)
T ss_dssp EEEECCCCTTTTCSSCCGGGHHHHHCTTCCEEEECSCCCC-----HHHHHHHHHHCSCEEECCCTTCCSCCBC-------
T ss_pred EEEEecCCCCCChHHHHHHHHHHHhcCCCCEEEECCCCCC-----HHHHHHHHHcCCCEEEecCCCcCccccc-------
Confidence 4568999986421 2222222211345689999999997 4788888877656889999999654220
Q ss_pred CccccHHHhhCCCCHHHHHHHHhcCCceE--EeC--CEEEEeccc
Q psy14504 760 SKLDTFDDILDAPDKKKLVSWLRTQPLAI--YYK--KYLMIHAGV 800 (951)
Q Consensus 760 ~~~~~~~~~~~~~~~~~~~~~l~~~p~~~--~~~--~~~~vHAG~ 800 (951)
. .+|+..+|... +.+ +++++||..
T Consensus 96 ---~--------------~~~~~~lp~~~~~~~~~~~i~l~Hg~~ 123 (215)
T 2a22_A 96 ---D--------------PESNGVFPEYVVVQIGEFKIGLMHGNQ 123 (215)
T ss_dssp ---C--------------GGGTBCCCSEEEEEETTEEEEEECSTT
T ss_pred ---C--------------hhhHhhCCceEEEecCCeEEEEEcCCc
Confidence 0 03667788643 333 689999864
No 211
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=97.99 E-value=4.5e-06 Score=88.02 Aligned_cols=69 Identities=12% Similarity=0.140 Sum_probs=49.3
Q ss_pred cccccccccchHHHHHHHHhhcccCCccceeecccccCCcceE-----------------------------ehhHHHHH
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQS-----------------------------LDTLRMVY 732 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~-----------------------------~~~l~~~~ 732 (951)
..-++|+|+....+.++++.+.. ...|.++++||++++++.+ .++++.+.
T Consensus 8 i~~iSDlH~~~~~~~~~l~~~~~-~~~D~vi~~GDl~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~l~ 86 (260)
T 2yvt_A 8 VLAIKNFKERFDLLPKLKGVIAE-KQPDILVVVGNILKNEALEKEYERAHLARREPNRKVIHENEHYIIETLDKFFREIG 86 (260)
T ss_dssp EEEEECCTTCGGGHHHHHHHHHH-HCCSEEEEESCCCCCHHHHHHHHHHHHTTCCCCTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeecCCChHHHHHHHHHHHh-cCCCEEEECCCCCCccCcchhhhhhhhhhcccchhhhhHHHHHHHHHHHHHHHHHH
Confidence 35689999998888888887753 3458999999999999752 22333333
Q ss_pred hcCCccEEEcCCChHHHHH
Q psy14504 733 SMRNYAKIVLGNHEIHLLD 751 (951)
Q Consensus 733 ~~~~~~~~v~GNHe~~~l~ 751 (951)
+....+.+|+||||.....
T Consensus 87 ~~~~pv~~v~GNHD~~~~~ 105 (260)
T 2yvt_A 87 ELGVKTFVVPGKNDAPLKI 105 (260)
T ss_dssp TTCSEEEEECCTTSCCHHH
T ss_pred hcCCcEEEEcCCCCchhhh
Confidence 2233478999999976543
No 212
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.98 E-value=9.3e-05 Score=87.97 Aligned_cols=175 Identities=11% Similarity=0.068 Sum_probs=96.1
Q ss_pred hcCCCCCccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHH--cCCCCCCcCCCeEEEEehhhh---
Q psy14504 39 RLGKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRII--NGEVPNSLLSKKILLLDIALL--- 111 (951)
Q Consensus 39 rp~~l~~lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~l--- 111 (951)
.|.....+||++.+++.+...+.. ...+-++++||+|+||||||..+++... .... ...++.++++..
T Consensus 119 ~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f-----~~~v~wv~~~~~~~~ 193 (591)
T 1z6t_A 119 VPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCF-----PGGVHWVSVGKQDKS 193 (591)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHC-----TTCEEEEEEESCCHH
T ss_pred CCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhC-----CCceEEEECCCCchH
Confidence 366778899999999999998874 3344578999999999999999875321 1000 112333332111
Q ss_pred --h---------cC------ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcE
Q psy14504 112 --L---------AG------TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGEL 174 (951)
Q Consensus 112 --~---------~~------~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i 174 (951)
. .+ .......+.....+...+....++.+|+||+++.. .. +.. + ....
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~----------~~---l~~-l-~~~~ 258 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS----------WV---LKA-F-DSQC 258 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH----------HH---HHT-T-CSSC
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH----------HH---HHH-h-cCCC
Confidence 0 00 00011222222223333333336899999999753 11 222 2 2345
Q ss_pred EEEEeecchHHHHhhhcCHHHhhcceEEEe---eCCCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhhh
Q psy14504 175 HCIGATTLNEYRQYIEKDAAFERRFQKILV---EEPDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYRY 246 (951)
Q Consensus 175 ~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~---~~p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~~ 246 (951)
.||.||...... .... -..+.+ .+++.++-.+++...... ...-.++....+++.+++.
T Consensus 259 ~ilvTsR~~~~~------~~~~--~~~~~v~~l~~L~~~ea~~L~~~~~~~-----~~~~~~~~~~~i~~~~~G~ 320 (591)
T 1z6t_A 259 QILLTTRDKSVT------DSVM--GPKYVVPVESSLGKEKGLEILSLFVNM-----KKADLPEQAHSIIKECKGS 320 (591)
T ss_dssp EEEEEESCGGGG------TTCC--SCEEEEECCSSCCHHHHHHHHHHHHTS-----CGGGSCTHHHHHHHHHTTC
T ss_pred eEEEECCCcHHH------HhcC--CCceEeecCCCCCHHHHHHHHHHHhCC-----CcccccHHHHHHHHHhCCC
Confidence 666676655410 0011 112344 468999999998766532 1111134556677777654
No 213
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.93 E-value=1.3e-05 Score=79.37 Aligned_cols=96 Identities=15% Similarity=0.142 Sum_probs=50.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc--cccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS--EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 549 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iD 549 (951)
..+++||+|+|||+++..++..+...+.++..+... .-.....+....|.............+...+. ....+|+||
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~-~~~dvviID 83 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE-EDTRGVFID 83 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC-TTEEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc-CCCCEEEEE
Confidence 478999999999999966666554445444443221 00000001111111100111111111222121 246899999
Q ss_pred cccccCHHHHHHHHHHhhc
Q psy14504 550 EIEKANSDVFNILLQILDD 568 (951)
Q Consensus 550 Eid~~~~~~~~~Ll~~le~ 568 (951)
|++.++++.++.|..+.+.
T Consensus 84 E~Q~~~~~~~~~l~~l~~~ 102 (184)
T 2orw_A 84 EVQFFNPSLFEVVKDLLDR 102 (184)
T ss_dssp CGGGSCTTHHHHHHHHHHT
T ss_pred CcccCCHHHHHHHHHHHHC
Confidence 9999988888888878775
No 214
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=97.93 E-value=2.1e-05 Score=78.71 Aligned_cols=129 Identities=13% Similarity=0.081 Sum_probs=72.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc-----cCC-CceEEeccccccchhchhcccCCC---CCCccccc-cchhHHHH--H
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIF-----NNE-ESIIRIDMSEFIEKHSISRLIGAP---PGYIGYEE-GGYLTEIV--R 539 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~-----~~~-~~~~~~~~~~~~~~~~~~~l~g~~---~~~~g~~~-~~~l~~~~--~ 539 (951)
..|++|+||+|||++|..++.... ..+ .++...++.++...... . .... ....+... ...+...+ .
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~-~-~~~k~~~~~~~~~~~~~~~~~~~~~~~ 84 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTY-I-ETDAKKLPKSTDEQLSAHDMYEWIKKP 84 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEE-E-ECCTTTCSSCCSSCEEGGGHHHHTTSG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccc-c-chhhhhccccCcccccHHHHHHHhhcc
Confidence 578999999999999988765543 334 56656666655432210 0 0000 00111110 12333432 3
Q ss_pred hCCCeEEEEcccccc--CH-HHH--HHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHH
Q psy14504 540 RKPYSLILLDEIEKA--NS-DVF--NILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMN 614 (951)
Q Consensus 540 ~~~~~vl~iDEid~~--~~-~~~--~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~ 614 (951)
...++||+|||++.+ +. ... ..++..++..+ ....-+|++|+. ..
T Consensus 85 ~~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r----------~~~~~iil~tq~-~~------------------- 134 (199)
T 2r2a_A 85 ENIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHR----------HQGIDIFVLTQG-PK------------------- 134 (199)
T ss_dssp GGTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTT----------TTTCEEEEEESC-GG-------------------
T ss_pred ccCceEEEEEChhhhccCccccchhHHHHHHHHhcC----------cCCeEEEEECCC-HH-------------------
Confidence 445799999999987 22 111 13455555421 123345666665 22
Q ss_pred HHHhccChhHhhccCcEEEecC
Q psy14504 615 EVKIYFRPEFINRIDDIIVFRY 636 (951)
Q Consensus 615 ~~~~~f~p~l~~R~~~~i~f~~ 636 (951)
.+...+.+|++..+.+.+
T Consensus 135 ----~l~~~lr~ri~~~~~l~~ 152 (199)
T 2r2a_A 135 ----LLDQNLRTLVRKHYHIAS 152 (199)
T ss_dssp ----GBCHHHHTTEEEEEEEEE
T ss_pred ----HHhHHHHHHhheEEEEcC
Confidence 345678899988888877
No 215
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=97.91 E-value=2.3e-05 Score=77.22 Aligned_cols=56 Identities=18% Similarity=0.151 Sum_probs=42.5
Q ss_pred cccccccccchHHHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHH
Q psy14504 682 IYGARDVHGCKKSLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIH 748 (951)
Q Consensus 682 ~~g~~dlhg~~~~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~ 748 (951)
..-++|+|++...++++++.+.- ..|.++++||+. .++++.+. ..+.+|+||||..
T Consensus 9 i~~isD~H~~~~~~~~~~~~~~~--~~d~i~~~GD~~------~~~l~~l~---~~~~~v~GNhD~~ 64 (176)
T 3ck2_A 9 IIVMSDSHGDSLIVEEVRDRYVG--KVDAVFHNGDSE------LRPDSPLW---EGIRVVKGNMDFY 64 (176)
T ss_dssp EEEECCCTTCHHHHHHHHHHHTT--TSSEEEECSCCC------SCTTCGGG---TTEEECCCTTCCS
T ss_pred EEEEecCCCCHHHHHHHHHHhhc--CCCEEEECCCCc------hHHHHhhh---CCeEEecCcccch
Confidence 45689999999999999987762 568999999972 23444333 2588999999954
No 216
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.87 E-value=7.2e-05 Score=73.59 Aligned_cols=23 Identities=35% Similarity=0.601 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.|+||+|+||||+++.|+..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 217
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=97.86 E-value=2.8e-05 Score=77.70 Aligned_cols=63 Identities=19% Similarity=0.271 Sum_probs=42.1
Q ss_pred cccccccccchH--HHHHHHHhhcccCCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHH
Q psy14504 682 IYGARDVHGCKK--SLSILLKKIHKKSPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHL 749 (951)
Q Consensus 682 ~~g~~dlhg~~~--~l~~~l~~~~~~~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~ 749 (951)
..-++|+|+... .+.+.+.++--....|.++++||+++ .++++++.++...+.+|+||||...
T Consensus 13 i~~iSD~H~~~~~~~~~~~l~~~~~~~~~d~ii~~GDl~~-----~~~~~~l~~~~~~~~~v~GNhD~~~ 77 (192)
T 1z2w_A 13 VLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCT-----KESYDYLKTLAGDVHIVRGDFDENL 77 (192)
T ss_dssp EEEECCCCBTTTCSSCCHHHHTTCCTTSCSEEEECSCCBS-----HHHHHHHHHHCSEEEECCCTTCCCT
T ss_pred EEEEecCCCCccchhHHHHHHHHhccCCCCEEEEcCCCCC-----HHHHHHHHhcCCCEEEEcCCcCccc
Confidence 456899998531 12222322211245689999999996 5678888777656889999999654
No 218
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.71 E-value=0.00014 Score=73.29 Aligned_cols=153 Identities=16% Similarity=0.158 Sum_probs=84.3
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCC---CCC---Ccccccc-chhHHHHHhCC
Q psy14504 470 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGA---PPG---YIGYEEG-GYLTEIVRRKP 542 (951)
Q Consensus 470 ~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~---~~~---~~g~~~~-~~l~~~~~~~~ 542 (951)
..++++.|+||||||++|-.+|..+...+..+..+++..-........+-|. +.. +.|.... ..+...+.. .
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~-~ 84 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKA-A 84 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHH-C
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhc-C
Confidence 3479999999999999999999998777777776666442221111111111 111 1111111 233343443 4
Q ss_pred CeEEEEccccccC------HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCch-hhhhhccccHHHHHHHHHHH
Q psy14504 543 YSLILLDEIEKAN------SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD-KIKEMEKGDKEIIKLAVMNE 615 (951)
Q Consensus 543 ~~vl~iDEid~~~------~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~-~~~~~~~~~~~~~~~~~~~~ 615 (951)
+.++++||+-..+ +-.+..+...++.| .-++.|+|.... .+.+. +.+.-.-.
T Consensus 85 pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg--------------idVitT~Nlqh~esl~d~-------v~~itg~~ 143 (228)
T 2r8r_A 85 PSLVLVDELAHTNAPGSRHTKRWQDIQELLAAG--------------IDVYTTVNVQHLESLNDQ-------VRGITGVQ 143 (228)
T ss_dssp CSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT--------------CEEEEEEEGGGBGGGHHH-------HHHHHSCC
T ss_pred CCEEEEeCCCCCCcccchhHHHHHHHHHHHcCC--------------CCEEEEccccccccHHHH-------HHHHcCCC
Confidence 6899999987542 11233333344432 237788886532 22111 00000001
Q ss_pred HHhccChhHhhccCcEEEecCCChhhHHHH
Q psy14504 616 VKIYFRPEFINRIDDIIVFRYLNRKNILSI 645 (951)
Q Consensus 616 ~~~~f~p~l~~R~~~~i~f~~l~~~~~~~i 645 (951)
++..++..++.+.| -|.+-.++++++.+-
T Consensus 144 v~e~vpd~~~~~a~-~v~lvD~~p~~l~~r 172 (228)
T 2r8r_A 144 VRETLPDWVLQEAF-DLVLIDLPPRELLER 172 (228)
T ss_dssp CCSCBCHHHHHTCS-EEEEBCCCHHHHHHH
T ss_pred cCCcCccHHHhhCC-eEEEecCCHHHHHHH
Confidence 23456778888886 477777888886554
No 219
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=97.71 E-value=6.9e-05 Score=79.62 Aligned_cols=70 Identities=14% Similarity=0.246 Sum_probs=41.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCCccccc--cchhHHHHHhCCCeEEEEc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGYIGYEE--GGYLTEIVRRKPYSLILLD 549 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~g~~~--~~~l~~~~~~~~~~vl~iD 549 (951)
.++|+||||||||++|..+|.. .+....++.....+..+. +....+ ...+.+.+...+ +||||
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~-~G~~VlyIs~~~eE~v~~------------~~~~le~~l~~i~~~l~~~~--LLVID 189 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEA-LGGKDKYATVRFGEPLSG------------YNTDFNVFVDDIARAMLQHR--VIVID 189 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHH-HHTTSCCEEEEBSCSSTT------------CBCCHHHHHHHHHHHHHHCS--EEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHh-CCCCEEEEEecchhhhhh------------hhcCHHHHHHHHHHHHhhCC--EEEEe
Confidence 5789999999999999999987 222334555522332111 100000 012334444444 99999
Q ss_pred cccccCH
Q psy14504 550 EIEKANS 556 (951)
Q Consensus 550 Eid~~~~ 556 (951)
+++.+.+
T Consensus 190 sI~aL~~ 196 (331)
T 2vhj_A 190 SLKNVIG 196 (331)
T ss_dssp CCTTTC-
T ss_pred ccccccc
Confidence 9987743
No 220
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.69 E-value=4e-05 Score=98.56 Aligned_cols=77 Identities=14% Similarity=0.125 Sum_probs=55.7
Q ss_pred cEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh----hh---cC---cccccc----HHHHHHHHHHHHH
Q psy14504 68 PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL----LL---AG---TKYRGE----FEDRLKKILKEIS 133 (951)
Q Consensus 68 iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~----l~---~~---~~~~g~----~~~~l~~~~~~a~ 133 (951)
+|++||||||||+||++++.+.... +.+.+.++... +. .| .++.++ .+..++.++..++
T Consensus 1085 ~l~~G~~g~GKT~la~~~~~~~~~~-------g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar 1157 (1706)
T 3cmw_A 1085 VEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 1157 (1706)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHhhhc-------CCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHH
Confidence 8999999999999999999876443 22333333322 11 01 345566 7888888887776
Q ss_pred hcCCCeEEEEecccccccC
Q psy14504 134 NNQKDIIIFIDELHTMIGT 152 (951)
Q Consensus 134 ~~~~~~iL~iDEid~l~~~ 152 (951)
...++++|+|+++.|++.
T Consensus 1158 -~~~~~~i~~d~~~al~~~ 1175 (1706)
T 3cmw_A 1158 -SGAVDVIVVDSVAALTPK 1175 (1706)
T ss_dssp -HTCCSEEEESCGGGCCCH
T ss_pred -hcCCeEEEeCchHhcCcc
Confidence 456999999999999987
No 221
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.58 E-value=0.00019 Score=72.90 Aligned_cols=96 Identities=11% Similarity=0.057 Sum_probs=57.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc-hhchhcccCCCCCCccccccchhHHHHHh----CCCeEE
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE-KHSISRLIGAPPGYIGYEEGGYLTEIVRR----KPYSLI 546 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~-~~~~~~l~g~~~~~~g~~~~~~l~~~~~~----~~~~vl 546 (951)
-++++||+|+||||++..++..+...+..+..+....-.. ...+..-+|.............+...+.. ..+.+|
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dvV 93 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKVI 93 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCEE
Confidence 5788999999999999888887766666666664322111 11111122322111111122334445543 347899
Q ss_pred EEccccccCHHHHHHHHHHhh
Q psy14504 547 LLDEIEKANSDVFNILLQILD 567 (951)
Q Consensus 547 ~iDEid~~~~~~~~~Ll~~le 567 (951)
+|||+..++.+....+..+.+
T Consensus 94 iIDEaQ~l~~~~ve~l~~L~~ 114 (223)
T 2b8t_A 94 GIDEVQFFDDRICEVANILAE 114 (223)
T ss_dssp EECSGGGSCTHHHHHHHHHHH
T ss_pred EEecCccCcHHHHHHHHHHHh
Confidence 999999998887776655444
No 222
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.53 E-value=3.2e-05 Score=76.56 Aligned_cols=117 Identities=20% Similarity=0.152 Sum_probs=57.7
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh-hhhc---------CccccccHHHHHHHHHHHHHhcC
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA-LLLA---------GTKYRGEFEDRLKKILKEISNNQ 136 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~-~l~~---------~~~~~g~~~~~l~~~~~~a~~~~ 136 (951)
-.+++||+|+||||++..++..+... +..++.+... +... +.............++..+. .
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~-------g~~v~~~~~~~d~r~~~~~i~s~~g~~~~~~~~~~~~~~~~~~~--~ 75 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLG-------KKKVAVFKPKIDSRYHSTMIVSHSGNGVEAHVIERPEEMRKYIE--E 75 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT-------TCEEEEEEEC-----CCCEECC----CEECEEESSGGGGGGGCC--T
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeeccccccCcccEEecCCCceeeEEECCHHHHHHHhc--C
Confidence 35788999999999997777765432 2222222111 0000 00000000001122232221 2
Q ss_pred CCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHH-HhhhcCHHHhhcceE
Q psy14504 137 KDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYR-QYIEKDAAFERRFQK 201 (951)
Q Consensus 137 ~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~-~~~~~~~~l~~Rf~~ 201 (951)
...+|+|||++.+.+ +..+.|..+.+.+ +.+|.++...+|. +.+...+.++++.+.
T Consensus 76 ~~dvviIDE~Q~~~~--------~~~~~l~~l~~~~-~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~ 132 (184)
T 2orw_A 76 DTRGVFIDEVQFFNP--------SLFEVVKDLLDRG-IDVFCAGLDLTHKQNPFETTALLLSLADT 132 (184)
T ss_dssp TEEEEEECCGGGSCT--------THHHHHHHHHHTT-CEEEEEEESBCTTSCBCHHHHHHHHHCSE
T ss_pred CCCEEEEECcccCCH--------HHHHHHHHHHHCC-CCEEEEeeccccccCCccchHHHHHHhhh
Confidence 356999999998733 4555666666654 3344333322111 134556777777765
No 223
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.50 E-value=0.00075 Score=87.66 Aligned_cols=177 Identities=12% Similarity=0.053 Sum_probs=97.5
Q ss_pred HhcCCCCCccccHHHHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHH--cCCCCCCcCCCeEEEEehhhhh-
Q psy14504 38 ARLGKLDPVIGRDDEIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRII--NGEVPNSLLSKKILLLDIALLL- 112 (951)
Q Consensus 38 ~rp~~l~~lvG~~~~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~--~~~~~~~~~~~~~~~~~~~~l~- 112 (951)
-.|.....+||++++++.|...|.. ...+-+.|+|++|+||||||..+++... ... ....++.++++...
T Consensus 118 ~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~-----~~~~~~~v~~~~~~~ 192 (1249)
T 3sfz_A 118 GVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGC-----FSGGVHWVSIGKQDK 192 (1249)
T ss_dssp TCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTT-----STTCEEEEECCSCCH
T ss_pred CCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhh-----CCCeEEEEEECCcCc
Confidence 3566777899999999999998853 3334577999999999999998876531 111 12234444432210
Q ss_pred ---------------cC---ccccccHHHHHHHHHHHHH-hcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCc
Q psy14504 113 ---------------AG---TKYRGEFEDRLKKILKEIS-NNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGE 173 (951)
Q Consensus 113 ---------------~~---~~~~g~~~~~l~~~~~~a~-~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~ 173 (951)
.. ..........+...+.... ...++.+|+||+++.. . .+..+ ...
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~----------~---~~~~~--~~~ 257 (1249)
T 3sfz_A 193 SGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP----------W---VLKAF--DNQ 257 (1249)
T ss_dssp HHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH----------H---HHTTT--CSS
T ss_pred hHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH----------H---HHHhh--cCC
Confidence 00 0001111222333333322 1234789999999854 1 12222 234
Q ss_pred EEEEEeecchHHHHhhhcCHHHhhcceEEEeeC-CCHHHHHHHHHHHHHhhhhhcCCCCChHHHHHHHHHhhh
Q psy14504 174 LHCIGATTLNEYRQYIEKDAAFERRFQKILVEE-PDIEETISILRGLQKKYEVHHGVEITDPAIVAASELSYR 245 (951)
Q Consensus 174 i~vI~at~~~~~~~~~~~~~~l~~Rf~~i~~~~-p~~~er~~il~~~~~~~~~~~~~~i~~~~l~~~~~~s~~ 245 (951)
..||.||..... -..+...-..+.+++ ++.++-.+++....... .-. .++....+++.+++
T Consensus 258 ~~ilvTtR~~~~------~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~----~~~-~~~~~~~i~~~~~g 319 (1249)
T 3sfz_A 258 CQILLTTRDKSV------TDSVMGPKHVVPVESGLGREKGLEILSLFVNMK----KED-LPAEAHSIIKECKG 319 (1249)
T ss_dssp CEEEEEESSTTT------TTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSC----STT-CCTHHHHHHHHTTT
T ss_pred CEEEEEcCCHHH------HHhhcCCceEEEecCCCCHHHHHHHHHHhhCCC----hhh-CcHHHHHHHHHhCC
Confidence 567777765531 111111122478886 89999999987655321 111 12344556666544
No 224
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.38 E-value=0.0004 Score=79.46 Aligned_cols=112 Identities=24% Similarity=0.379 Sum_probs=63.7
Q ss_pred ChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHHhccCCC-ceEEeccccccch----------
Q psy14504 444 GQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSACIFNNEE-SIIRIDMSEFIEK---------- 512 (951)
Q Consensus 444 Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~-~~~~~~~~~~~~~---------- 512 (951)
+|..++..+...+.... +++++.||||||||+++.+++..+...+. .+..+..+.-...
T Consensus 29 ~Q~~av~~~~~~i~~~~----------~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~~~~~ 98 (459)
T 3upu_A 29 GQKNAFNIVMKAIKEKK----------HHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLSGKEA 98 (459)
T ss_dssp HHHHHHHHHHHHHHSSS----------CEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHHSSCE
T ss_pred HHHHHHHHHHHHHhcCC----------CEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhhccch
Confidence 56666777766665311 26999999999999999999998865554 3433322211100
Q ss_pred hchhcccCCCCCCccccccchh--HHHHHhCCCeEEEEccccccCHHHHHHHHHHhh
Q psy14504 513 HSISRLIGAPPGYIGYEEGGYL--TEIVRRKPYSLILLDEIEKANSDVFNILLQILD 567 (951)
Q Consensus 513 ~~~~~l~g~~~~~~g~~~~~~l--~~~~~~~~~~vl~iDEid~~~~~~~~~Ll~~le 567 (951)
..+..+++..+...+ ....+ ..........+|++||+..+++..+..|+..+.
T Consensus 99 ~T~h~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~iiiDE~~~~~~~~~~~l~~~~~ 153 (459)
T 3upu_A 99 STIHSILKINPVTYE--ENVLFEQKEVPDLAKCRVLICDEVSMYDRKLFKILLSTIP 153 (459)
T ss_dssp EEHHHHHTEEEEECS--SCEEEEECSCCCCSSCSEEEESCGGGCCHHHHHHHHHHSC
T ss_pred hhHHHHhccCccccc--ccchhcccccccccCCCEEEEECchhCCHHHHHHHHHhcc
Confidence 000011110000000 00000 000011246799999999999999999999886
No 225
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.28 E-value=0.0016 Score=76.31 Aligned_cols=149 Identities=17% Similarity=0.158 Sum_probs=82.4
Q ss_pred cccHHHHHHHHHHHHcC---CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh-----------
Q psy14504 47 IGRDDEIRRAIQVLQRR---SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL----------- 112 (951)
Q Consensus 47 vG~~~~i~~l~~~l~~~---~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~----------- 112 (951)
+|++.+++.+...|... ...-+.++|++|+||||||+.+++.+ ...+.... . ..+.++++...
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~-~~~~~~~F-~-~~~wv~vs~~~~~~~~~~~~~i 207 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKS-DQLIGINY-D-SIVWLKDSGTAPKSTFDLFTDI 207 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHC-SSTBTTTB-S-EEEEEECCCCSTTHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhh-hHHHhccC-C-cEEEEEECCCCCCCHHHHHHHH
Confidence 59999999999988654 34557899999999999999999621 00001111 2 22233433210
Q ss_pred ---cCcc----cc---cc-HHHHHHHHHHHHHhcCC-CeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEee
Q psy14504 113 ---AGTK----YR---GE-FEDRLKKILKEISNNQK-DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGAT 180 (951)
Q Consensus 113 ---~~~~----~~---g~-~~~~l~~~~~~a~~~~~-~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at 180 (951)
.+.. .. .+ ....+...+.... .++ +++|+||+++... .. .+.. .....||.||
T Consensus 208 l~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L-~~~kr~LlVLDdv~~~~---------~~--~~~~---~~gs~ilvTT 272 (549)
T 2a5y_B 208 LLMLKSEDDLLNFPSVEHVTSVVLKRMICNAL-IDRPNTLFVFDDVVQEE---------TI--RWAQ---ELRLRCLVTT 272 (549)
T ss_dssp HHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHH-TTSTTEEEEEEEECCHH---------HH--HHHH---HTTCEEEEEE
T ss_pred HHHHhcCcccccccccccccHHHHHHHHHHHH-cCCCcEEEEEECCCCch---------hh--cccc---cCCCEEEEEc
Confidence 0000 00 00 1112333333332 233 7999999998641 11 1111 1445677777
Q ss_pred cchHHHHhhhcCHHHhhcceEEEeeCCCHHHHHHHHHHH
Q psy14504 181 TLNEYRQYIEKDAAFERRFQKILVEEPDIEETISILRGL 219 (951)
Q Consensus 181 ~~~~~~~~~~~~~~l~~Rf~~i~~~~p~~~er~~il~~~ 219 (951)
...... .....--..+.+++.+.++-.+++...
T Consensus 273 R~~~v~------~~~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 273 RDVEIS------NAASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp SBGGGG------GGCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred CCHHHH------HHcCCCCeEEECCCCCHHHHHHHHHHH
Confidence 655411 111001124889999999999988765
No 226
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.19 E-value=0.0018 Score=78.76 Aligned_cols=42 Identities=24% Similarity=0.243 Sum_probs=35.8
Q ss_pred ccccHHHHHHHHHHHHc-CCCCCcEEEcCCCCcHHHHHHHHHH
Q psy14504 46 VIGRDDEIRRAIQVLQR-RSKNNPVLIGEPGVGKTAIVEGLAQ 87 (951)
Q Consensus 46 lvG~~~~i~~l~~~l~~-~~~~~iLL~GppGtGKTtla~~la~ 87 (951)
.||++..++.|...|.. ...+-+.++|++|+||||||+.+++
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~ 172 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCL 172 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHH
Confidence 39999999999998876 3345578889999999999999985
No 227
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=97.16 E-value=0.00073 Score=74.00 Aligned_cols=93 Identities=22% Similarity=0.356 Sum_probs=53.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccC-CCceEEe-ccccccchhchhcccCCCCCCccccc---cchhHHHHHhCCCeE
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRI-DMSEFIEKHSISRLIGAPPGYIGYEE---GGYLTEIVRRKPYSL 545 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~-~~~~~~~-~~~~~~~~~~~~~l~g~~~~~~g~~~---~~~l~~~~~~~~~~v 545 (951)
+.+++.||+|+||||+.++|+..+... +..++.+ +..++........+... .++... ...+...++ ..+.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~---~~~~~~~~~~~~La~aL~-~~Pdv 199 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQR---EVHRDTLGFSEALRSALR-EDPDI 199 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEE---EBTTTBSCHHHHHHHHTT-SCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeee---eeccccCCHHHHHHHHhh-hCcCE
Confidence 368999999999999999999888543 3444443 23333221100000000 011111 112333334 45699
Q ss_pred EEEccccccCHHHHHHHHHHhhcc
Q psy14504 546 ILLDEIEKANSDVFNILLQILDDG 569 (951)
Q Consensus 546 l~iDEid~~~~~~~~~Ll~~le~g 569 (951)
|++||+- ++.....+++..+.|
T Consensus 200 illDEp~--d~e~~~~~~~~~~~G 221 (356)
T 3jvv_A 200 ILVGEMR--DLETIRLALTAAETG 221 (356)
T ss_dssp EEESCCC--SHHHHHHHHHHHHTT
T ss_pred EecCCCC--CHHHHHHHHHHHhcC
Confidence 9999996 577777777776653
No 228
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.15 E-value=0.0027 Score=63.89 Aligned_cols=137 Identities=18% Similarity=0.212 Sum_probs=71.8
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh--------hhhcCccc--------ccc--HHHH
Q psy14504 63 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA--------LLLAGTKY--------RGE--FEDR 124 (951)
Q Consensus 63 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~--------~l~~~~~~--------~g~--~~~~ 124 (951)
+...++++.|+|||||||++-.+|..+... +..+..++.. .+..+... .|. .+..
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~~l~~~-------G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~ 76 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAHAQLRQ-------GVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMD 76 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHHHHHHT-------TCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECC
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHC-------CCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCccccccc
Confidence 345678999999999999999999988653 4455544442 22221110 000 1112
Q ss_pred HHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchHHHH---h----------hhc
Q psy14504 125 LKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNEYRQ---Y----------IEK 191 (951)
Q Consensus 125 l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~~~~---~----------~~~ 191 (951)
+..++. . .|-+++|||+-...... .. .......+...++.+ +-+++|+|-...+. . ..+
T Consensus 77 l~~~L~--~---~pdlvIVDElG~~~~~~-~r-~~~~~qDV~~~l~sg-idVitT~Nlqh~esl~d~v~~itg~~v~e~v 148 (228)
T 2r8r_A 77 LDALLK--A---APSLVLVDELAHTNAPG-SR-HTKRWQDIQELLAAG-IDVYTTVNVQHLESLNDQVRGITGVQVRETL 148 (228)
T ss_dssp HHHHHH--H---CCSEEEESCTTCBCCTT-CS-SSBHHHHHHHHHHTT-CEEEEEEEGGGBGGGHHHHHHHHSCCCCSCB
T ss_pred HHHHHh--c---CCCEEEEeCCCCCCccc-ch-hHHHHHHHHHHHcCC-CCEEEEccccccccHHHHHHHHcCCCcCCcC
Confidence 333332 1 35599999998653221 11 111222233344444 66777777432111 1 124
Q ss_pred CHHHhhcceEEEeeCCCHHHHHH
Q psy14504 192 DAAFERRFQKILVEEPDIEETIS 214 (951)
Q Consensus 192 ~~~l~~Rf~~i~~~~p~~~er~~ 214 (951)
+..+..+.+.|.+=..++++..+
T Consensus 149 pd~~~~~a~~v~lvD~~p~~l~~ 171 (228)
T 2r8r_A 149 PDWVLQEAFDLVLIDLPPRELLE 171 (228)
T ss_dssp CHHHHHTCSEEEEBCCCHHHHHH
T ss_pred ccHHHhhCCeEEEecCCHHHHHH
Confidence 45555566556655555665333
No 229
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.08 E-value=0.0038 Score=69.75 Aligned_cols=115 Identities=14% Similarity=0.146 Sum_probs=65.4
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh-----chhcccCCCC--CCccccccchhHHH---HH
Q psy14504 470 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH-----SISRLIGAPP--GYIGYEEGGYLTEI---VR 539 (951)
Q Consensus 470 ~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~-----~~~~l~g~~~--~~~g~~~~~~l~~~---~~ 539 (951)
...++|+||+|+||||++..||..+...+..+..+++..+.... ......|.+. .+.+.+....+... ++
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a~ 179 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYFK 179 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHHH
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999999987777777777766543321 1111112211 01122222222232 33
Q ss_pred hCCCeEEEEccccccC--HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCc
Q psy14504 540 RKPYSLILLDEIEKAN--SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGS 594 (951)
Q Consensus 540 ~~~~~vl~iDEid~~~--~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~ 594 (951)
...+.+++||.+...+ ......|..+..- +....+++|+.+..+.
T Consensus 180 ~~~~DvVIIDTaGrl~~d~~lm~el~~i~~~----------~~pd~vlLVvDA~~gq 226 (443)
T 3dm5_A 180 SKGVDIIIVDTAGRHKEDKALIEEMKQISNV----------IHPHEVILVIDGTIGQ 226 (443)
T ss_dssp HTTCSEEEEECCCCSSCCHHHHHHHHHHHHH----------HCCSEEEEEEEGGGGG
T ss_pred hCCCCEEEEECCCcccchHHHHHHHHHHHHh----------hcCceEEEEEeCCCch
Confidence 4457899999997765 3444444443321 1123456666655544
No 230
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.06 E-value=0.00041 Score=71.29 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.6
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
..++|+||||+||||+++.++..+.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~ 48 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGL 48 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 4578899999999999999997654
No 231
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.06 E-value=0.0033 Score=72.18 Aligned_cols=143 Identities=16% Similarity=0.243 Sum_probs=87.9
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhh--hc--C-----ccccccHH---HHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALL--LA--G-----TKYRGEFE---DRLKKILKEI 132 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l--~~--~-----~~~~g~~~---~~l~~~~~~a 132 (951)
.+|+|+.|.+|+|||++++.+...+.....|. ...++.+|.... .. + .....+.+ ..++.+..++
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~---ev~lilIDpKg~eLs~~~~lPHl~~~Vvtd~~~a~~~L~~lv~EM 290 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPS---EARLIMIDPKMLELSIYEGIPHLLCPVVTDMKEAANALRWSVAEM 290 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTT---TEEEEEECSSSHHHHTTTTCTTBSSSCBCCHHHHHHHHHHHHHHH
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCc---ceEEEEeCCChhhhHhhcCCCcccceeeCCHHHHHHHHHHHHHHH
Confidence 47999999999999999999888775543332 457777776531 10 0 00111111 1111111111
Q ss_pred H-------------------------h-----------------------cCCCeEEEEecccccccCCCCCCchhHHhh
Q psy14504 133 S-------------------------N-----------------------NQKDIIIFIDELHTMIGTGKVEGSIDAGNM 164 (951)
Q Consensus 133 ~-------------------------~-----------------------~~~~~iL~iDEid~l~~~~~~~~~~~~~~~ 164 (951)
. . .-.+.+|+|||++.++... ..+....
T Consensus 291 erR~~ll~~~gvrni~~Yn~~~~~~~~~G~~~~dp~~~~~~~~~~~~~~~~lP~ivvVIDE~~~L~~~~----~~~~~~~ 366 (574)
T 2iut_A 291 ERRYRLMAAMGVRNLAGFNRKVKDAEEAGTPLTDPLFRRESPDDEPPQLSTLPTIVVVVDEFADMMMIV----GKKVEEL 366 (574)
T ss_dssp HHHHHHHHHHTCSSHHHHHHHHHHHHHTTCCCBCTTCCCCSTTCCCCBCCCCCEEEEEESCCTTHHHHT----CHHHHHH
T ss_pred HHHHHHHHHcCCccHHHHHHHHHHHhhcccccccccccccccccccccccCCCcEEEEEeCHHHHhhhh----hHHHHHH
Confidence 0 0 0113799999999887532 1234444
Q ss_pred hhhhcc---CCcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHHHHH
Q psy14504 165 LKPELS---RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETISILR 217 (951)
Q Consensus 165 L~~~le---~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~il~ 217 (951)
|..+.. .-.+.+|.+|.++. ...++..+++-|.. |-|...+..+...||.
T Consensus 367 L~~Iar~GRa~GIhLIlaTQRPs---~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 367 IARIAQKARAAGIHLILATQRPS---VDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp HHHHHHHCTTTTEEEEEEESCCC---TTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred HHHHHHHHhhCCeEEEEEecCcc---cccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 444443 34688888888775 22578888998885 8899999888877773
No 232
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.06 E-value=0.0027 Score=62.46 Aligned_cols=110 Identities=12% Similarity=0.157 Sum_probs=66.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc----ccchhchhcc------cCCCCCCcccccc----------
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE----FIEKHSISRL------IGAPPGYIGYEEG---------- 531 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~----~~~~~~~~~l------~g~~~~~~g~~~~---------- 531 (951)
.+++++++|.|||+.|-.+|.-..+.+.++..+.+.. .-....+..+ +|. ++.-....
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~--gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMAT--GFTWETQNREADTAACMA 107 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCT--TCCCCGGGHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEccc--ccccCCCCcHHHHHHHHH
Confidence 5899999999999999999998888888887774322 1111112222 121 23221110
Q ss_pred --chhHHHHHhCCCeEEEEcccc------ccCHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhh
Q psy14504 532 --GYLTEIVRRKPYSLILLDEIE------KANSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKI 597 (951)
Q Consensus 532 --~~l~~~~~~~~~~vl~iDEid------~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~ 597 (951)
....+.+....+.+|+|||+- .++.+ .+++++.+ .+.+.-+|+|+|..++.+
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~---ev~~~l~~-----------Rp~~~~vIlTGr~ap~~l 167 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLE---EVISALNA-----------RPGHQTVIITGRGCHRDI 167 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHH---HHHHHHHT-----------SCTTCEEEEECSSCCHHH
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHH---HHHHHHHh-----------CcCCCEEEEECCCCcHHH
Confidence 011112234568999999994 34433 35666664 345677999999876544
No 233
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.06 E-value=0.00082 Score=66.56 Aligned_cols=96 Identities=14% Similarity=0.147 Sum_probs=53.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc--hhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE--KHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 549 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~--~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iD 549 (951)
-.+++||+|+|||+.+-.++..+...+..+..+...--.. ...+..-.|......+......+...+. .+..+|+||
T Consensus 10 i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~-~~~dvViID 88 (191)
T 1xx6_A 10 VEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFE-EDTEVIAID 88 (191)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCC-TTCSEEEEC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHh-ccCCEEEEE
Confidence 5788999999999888888777755566666664221000 1111111121110111111122322222 246899999
Q ss_pred cccccCHHHHHHHHHHhhc
Q psy14504 550 EIEKANSDVFNILLQILDD 568 (951)
Q Consensus 550 Eid~~~~~~~~~Ll~~le~ 568 (951)
|+..++++..+.|..+.+.
T Consensus 89 Eaqfl~~~~v~~l~~l~~~ 107 (191)
T 1xx6_A 89 EVQFFDDEIVEIVNKIAES 107 (191)
T ss_dssp SGGGSCTHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHhC
Confidence 9999988877766655543
No 234
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.00 E-value=0.00087 Score=68.15 Aligned_cols=22 Identities=18% Similarity=0.102 Sum_probs=19.8
Q ss_pred CCcEEEcCCCCcHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQ 87 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~ 87 (951)
.-++|+||||+||||++..+|.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3468899999999999999998
No 235
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.92 E-value=0.0018 Score=66.39 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=27.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 506 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 506 (951)
.++++||||+|||++++.++..+...+..+..++.
T Consensus 25 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 25 FIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 58899999999999999999766444445555554
No 236
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.91 E-value=0.0025 Score=69.98 Aligned_cols=78 Identities=13% Similarity=0.180 Sum_probs=47.8
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh-------cCcc-------ccccHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-------AGTK-------YRGEFEDRLKKILKE 131 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~-------~~~~-------~~g~~~~~l~~~~~~ 131 (951)
.-++|+||||+|||++|..+|..+... +..++.++..... .+.. .....+ .+..++..
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~-------g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e-~~l~~l~~ 146 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKA-------GGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGE-QALEIMEL 146 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHH-HHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHC-------CCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHH-HHHHHHHH
Confidence 457889999999999999998876542 3344444432110 0000 011222 34444555
Q ss_pred HHhcCCCeEEEEeccccccc
Q psy14504 132 ISNNQKDIIIFIDELHTMIG 151 (951)
Q Consensus 132 a~~~~~~~iL~iDEid~l~~ 151 (951)
+....++.+|+||.+..+.+
T Consensus 147 l~~~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 147 LVRSGAIDVVVVDSVAALTP 166 (366)
T ss_dssp HHTTTCCSEEEEECTTTCCC
T ss_pred HHhcCCCCEEEEeChHHhcc
Confidence 54445677999999999975
No 237
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.89 E-value=0.011 Score=69.16 Aligned_cols=44 Identities=11% Similarity=0.103 Sum_probs=34.7
Q ss_pred CChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHH
Q psy14504 443 VGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSA 492 (951)
Q Consensus 443 ~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~ 492 (951)
+|.+..++.+...+.... ......+.++|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~~------~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMC------DLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHHT------TSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhccc------CCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 588888999988886431 11224688999999999999999996
No 238
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.89 E-value=0.0012 Score=86.01 Aligned_cols=84 Identities=17% Similarity=0.230 Sum_probs=57.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCC-CC------ccccccchhHHHHHhCCCe
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPP-GY------IGYEEGGYLTEIVRRKPYS 544 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~-~~------~g~~~~~~l~~~~~~~~~~ 544 (951)
+++++||||||||++|.+++......+.+...+++.+..+...... +|-.. .+ .+...........+...++
T Consensus 1083 ~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~-~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~~d 1161 (2050)
T 3cmu_A 1083 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARK-LGVDIDNLLCSQPDTGEQALEICDALARSGAVD 1161 (2050)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHH-TTCCTTTCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHH-cCCChhHheeecCcchHHHHHHHHHHHHhCCCC
Confidence 7999999999999999999988888888999999887665533221 12110 00 1111122333344567789
Q ss_pred EEEEccccccCH
Q psy14504 545 LILLDEIEKANS 556 (951)
Q Consensus 545 vl~iDEid~~~~ 556 (951)
+|+||++..+.+
T Consensus 1162 lvVIDsl~~L~~ 1173 (2050)
T 3cmu_A 1162 VIVVDSVAALTP 1173 (2050)
T ss_dssp EEEESCGGGCCC
T ss_pred EEEECCcccccc
Confidence 999999988843
No 239
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.87 E-value=0.0014 Score=66.39 Aligned_cols=102 Identities=18% Similarity=0.118 Sum_probs=54.2
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh---hh-cCcccccc-H----HHHHHHHHHHHHh---
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL---LL-AGTKYRGE-F----EDRLKKILKEISN--- 134 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~---l~-~~~~~~g~-~----~~~l~~~~~~a~~--- 134 (951)
-++++||+|+||||++..++..+... +..++.+...- .. .-.+..|- . ......++..+..
T Consensus 14 i~litG~mGsGKTT~ll~~~~r~~~~-------g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~ 86 (223)
T 2b8t_A 14 IEFITGPMFAGKTAELIRRLHRLEYA-------DVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSF 86 (223)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHhc-------CCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhh
Confidence 35677999999999999988887543 22333332110 00 00000110 0 0012234444442
Q ss_pred cCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchH
Q psy14504 135 NQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNE 184 (951)
Q Consensus 135 ~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~ 184 (951)
...+-+|+|||++.+.. +....+..+... .+.||.++...+
T Consensus 87 ~~~~dvViIDEaQ~l~~--------~~ve~l~~L~~~-gi~Vil~Gl~~d 127 (223)
T 2b8t_A 87 NDETKVIGIDEVQFFDD--------RICEVANILAEN-GFVVIISGLDKN 127 (223)
T ss_dssp CTTCCEEEECSGGGSCT--------HHHHHHHHHHHT-TCEEEEECCSBC
T ss_pred CCCCCEEEEecCccCcH--------HHHHHHHHHHhC-CCeEEEEecccc
Confidence 23356999999997632 333444433333 577888777544
No 240
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.87 E-value=0.0012 Score=65.42 Aligned_cols=24 Identities=38% Similarity=0.595 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIF 495 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~ 495 (951)
.+.|+||+|+||||+.+.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 378999999999999999998874
No 241
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.84 E-value=0.0008 Score=65.94 Aligned_cols=34 Identities=24% Similarity=0.352 Sum_probs=28.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
..|+|+|+||+||||+++.|++.+ +..++.++..
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l----------~~~~~~~~~D 37 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVL----------PEPWLAFGVD 37 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHS----------SSCEEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc----------CCCeEEeccc
Confidence 458899999999999999999988 5566655543
No 242
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.84 E-value=0.0018 Score=64.59 Aligned_cols=95 Identities=13% Similarity=0.121 Sum_probs=52.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc---ccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEE
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE---FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 548 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~---~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~i 548 (951)
-.+++||.|+|||+.+-.++......+.++..+...- +......+++ |....-.+......+...+. .+..+|+|
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d~R~ge~~i~s~~-g~~~~a~~~~~~~~~~~~~~-~~~dvViI 107 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCIDNRYSEEDVVSHN-GLKVKAVPVSASKDIFKHIT-EEMDVIAI 107 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC------------------CCEEECSSGGGGGGGCC-SSCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccCCcchHHHHHhhc-CCeeEEeecCCHHHHHHHHh-cCCCEEEE
Confidence 4668999999999998888877766676776665321 1111111111 22211111111122222222 24689999
Q ss_pred ccccccCHHHHHHHHHHhhc
Q psy14504 549 DEIEKANSDVFNILLQILDD 568 (951)
Q Consensus 549 DEid~~~~~~~~~Ll~~le~ 568 (951)
||+.-++++..+.|..+.+.
T Consensus 108 DEaQF~~~~~V~~l~~l~~~ 127 (214)
T 2j9r_A 108 DEVQFFDGDIVEVVQVLANR 127 (214)
T ss_dssp CCGGGSCTTHHHHHHHHHHT
T ss_pred ECcccCCHHHHHHHHHHhhC
Confidence 99999988777666555443
No 243
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.83 E-value=0.00052 Score=67.83 Aligned_cols=32 Identities=31% Similarity=0.309 Sum_probs=27.7
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
+.+|+|+|+|||||||+++.||+.+ +..++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l----------~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLT----------KRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH----------CCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh----------CCCEEEC
Confidence 4679999999999999999999998 6677644
No 244
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.82 E-value=0.0045 Score=69.21 Aligned_cols=116 Identities=14% Similarity=0.194 Sum_probs=64.9
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchh-----chhcccCCCC--CCccccccchhHHHHH---
Q psy14504 470 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKH-----SISRLIGAPP--GYIGYEEGGYLTEIVR--- 539 (951)
Q Consensus 470 ~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~-----~~~~l~g~~~--~~~g~~~~~~l~~~~~--- 539 (951)
...++|+||+|+||||++..||..+...+..+..+++..+.... ......|.+. ...+.+........+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~~~~gv~~~~~~~~~dp~~i~~~al~~a~ 176 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLGNQIGVQVYGEPNNQNPIEIAKKGVDIFV 176 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHHHTTTCCEECCTTCSCHHHHHHHHHHHTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHHHhcCCceeeccccCCHHHHHHHHHHHHH
Confidence 34788999999999999999999887667777666665443211 1111222211 0111111122223332
Q ss_pred hCCCeEEEEccccccC----HHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCch
Q psy14504 540 RKPYSLILLDEIEKAN----SDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSD 595 (951)
Q Consensus 540 ~~~~~vl~iDEid~~~----~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~ 595 (951)
...+.+++||.....+ +.....+..+... +....+++|+.+..+.+
T Consensus 177 ~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~----------~~pd~vlLVlDa~~gq~ 226 (433)
T 3kl4_A 177 KNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDV----------LKPDDVILVIDASIGQK 226 (433)
T ss_dssp TTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHH----------HCCSEEEEEEEGGGGGG
T ss_pred hcCCCEEEEECCCCccccCCHHHHHHHHHHHHh----------hCCcceEEEEeCccchH
Confidence 2357899999998754 4444444444332 11234567776665543
No 245
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.78 E-value=0.0019 Score=75.52 Aligned_cols=89 Identities=19% Similarity=0.336 Sum_probs=54.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccch----------hchhcccCCCCCCccccccchhHHHHHhC
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEK----------HSISRLIGAPPGYIGYEEGGYLTEIVRRK 541 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~----------~~~~~l~g~~~~~~g~~~~~~l~~~~~~~ 541 (951)
.+++.||||||||+++.+++..+...+.++..+..+.-... ..+.++++..+. +... ......
T Consensus 206 ~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~~~~a~Tih~ll~~~~~--~~~~-----~~~~~~ 278 (574)
T 3e1s_A 206 LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVTGRTASTVHRLLGYGPQ--GFRH-----NHLEPA 278 (574)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTSCEEEHHHHTTEETT--EESC-----SSSSCC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhhcccHHHHHHHHcCCcc--hhhh-----hhcccc
Confidence 58999999999999999999888665655554432211000 011122221110 0000 000112
Q ss_pred CCeEEEEccccccCHHHHHHHHHHhh
Q psy14504 542 PYSLILLDEIEKANSDVFNILLQILD 567 (951)
Q Consensus 542 ~~~vl~iDEid~~~~~~~~~Ll~~le 567 (951)
+..+|+|||+..++......|+..+.
T Consensus 279 ~~dvlIIDEasml~~~~~~~Ll~~~~ 304 (574)
T 3e1s_A 279 PYDLLIVDEVSMMGDALMLSLLAAVP 304 (574)
T ss_dssp SCSEEEECCGGGCCHHHHHHHHTTSC
T ss_pred cCCEEEEcCccCCCHHHHHHHHHhCc
Confidence 46899999999999998888887765
No 246
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.78 E-value=0.0025 Score=69.65 Aligned_cols=83 Identities=17% Similarity=0.223 Sum_probs=49.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCC---ccccccc----hhHHHHHhCCCe
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY---IGYEEGG----YLTEIVRRKPYS 544 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~---~g~~~~~----~l~~~~~~~~~~ 544 (951)
.++++||||+|||++|..++..+...+..+..++...-.... ..+.+|..... ....... .+...++...+.
T Consensus 63 iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~-~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 63 VIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPE-YAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHH-HHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 588999999999999999987775556677777765433221 12222321110 0000111 122233455679
Q ss_pred EEEEccccccC
Q psy14504 545 LILLDEIEKAN 555 (951)
Q Consensus 545 vl~iDEid~~~ 555 (951)
+|+||++..+.
T Consensus 142 lIVIDsl~~l~ 152 (349)
T 2zr9_A 142 IIVIDSVAALV 152 (349)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcChHhhc
Confidence 99999998775
No 247
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.78 E-value=0.0031 Score=68.71 Aligned_cols=84 Identities=20% Similarity=0.218 Sum_probs=51.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCC--cc-cccc----chhHHHHHhCCCe
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY--IG-YEEG----GYLTEIVRRKPYS 544 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~--~g-~~~~----~~l~~~~~~~~~~ 544 (951)
.++++||||+|||+|+..++..+...+..+++++..+-.... ..+-+|..... +- .... ..+...++.....
T Consensus 63 i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~-ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 63 IVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPV-YAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchH-HHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 588999999999999999998876556677788776543322 12222222110 00 0011 1122233446678
Q ss_pred EEEEccccccCH
Q psy14504 545 LILLDEIEKANS 556 (951)
Q Consensus 545 vl~iDEid~~~~ 556 (951)
+++||.+..+.+
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999876653
No 248
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.73 E-value=0.0011 Score=65.72 Aligned_cols=24 Identities=33% Similarity=0.625 Sum_probs=21.8
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~ 90 (951)
.+.|+||+|+||||+++.++..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 478999999999999999999875
No 249
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=96.71 E-value=0.0026 Score=69.58 Aligned_cols=78 Identities=17% Similarity=0.143 Sum_probs=46.2
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh-------cCcc-------ccccHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-------AGTK-------YRGEFEDRLKKILKE 131 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~-------~~~~-------~~g~~~~~l~~~~~~ 131 (951)
.-++|+||||+|||||+..++..+... +..++.++..... .+.. .....+ .+..++..
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e-~~l~~~~~ 133 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAA-------GGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGE-QALEIADM 133 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHH-HHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhC-------CCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHH-HHHHHHHH
Confidence 447899999999999999998776442 2344444432110 0000 001122 23334444
Q ss_pred HHhcCCCeEEEEeccccccc
Q psy14504 132 ISNNQKDIIIFIDELHTMIG 151 (951)
Q Consensus 132 a~~~~~~~iL~iDEid~l~~ 151 (951)
+.....+.+|+||++..+.+
T Consensus 134 l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 134 LVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp HHTTTCCSEEEEECGGGCCC
T ss_pred HHhcCCCCEEEEcChHhhcc
Confidence 44345578999999999874
No 250
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.67 E-value=0.00085 Score=67.24 Aligned_cols=26 Identities=27% Similarity=0.416 Sum_probs=23.8
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l 89 (951)
....++|+||||+||||+++.||+.+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 34679999999999999999999998
No 251
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.63 E-value=0.0021 Score=70.31 Aligned_cols=80 Identities=13% Similarity=0.180 Sum_probs=48.0
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhh----hh---cCcc------ccccHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIAL----LL---AGTK------YRGEFEDRLKKILKE 131 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~----l~---~~~~------~~g~~~~~l~~~~~~ 131 (951)
..-++|+||||+|||++|..+|..+... +..++.++... .. .+.. ........+..++..
T Consensus 63 G~ii~I~G~pGsGKTtLal~la~~~~~~-------g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~ 135 (356)
T 1u94_A 63 GRIVEIYGPESSGKTTLTLQVIAAAQRE-------GKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDA 135 (356)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHH
Confidence 3457899999999999999999876543 33455555421 10 0000 000112234445554
Q ss_pred HHhcCCCeEEEEeccccccc
Q psy14504 132 ISNNQKDIIIFIDELHTMIG 151 (951)
Q Consensus 132 a~~~~~~~iL~iDEid~l~~ 151 (951)
+.....+.+|+||.+..+.+
T Consensus 136 l~~~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 136 LARSGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HHHHTCCSEEEEECGGGCCC
T ss_pred HHhccCCCEEEEcCHHHhcc
Confidence 44345577999999999874
No 252
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.59 E-value=0.0051 Score=63.55 Aligned_cols=26 Identities=31% Similarity=0.431 Sum_probs=21.5
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
.-++|+||||+||||++..++..+..
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~ 49 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLK 49 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45789999999999999988776543
No 253
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.59 E-value=0.0013 Score=64.67 Aligned_cols=26 Identities=42% Similarity=0.586 Sum_probs=23.7
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l 89 (951)
....|+|+|+||+||||+++.+++.+
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 34679999999999999999999998
No 254
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.58 E-value=0.0036 Score=64.61 Aligned_cols=24 Identities=33% Similarity=0.342 Sum_probs=21.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
.-++|+||||+||||+++.++...
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~ 48 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTC 48 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHH
Confidence 457899999999999999999863
No 255
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.58 E-value=0.0048 Score=67.22 Aligned_cols=123 Identities=13% Similarity=0.075 Sum_probs=63.9
Q ss_pred hhhhhHHHHhhcchHHHH---hcCCCCCccccH------HHHHHHHHHHH-c--CCCCCcEEEcCCCCcHHHHHHHHHHH
Q psy14504 21 EEHIGYLKKYTIDLTEKA---RLGKLDPVIGRD------DEIRRAIQVLQ-R--RSKNNPVLIGEPGVGKTAIVEGLAQR 88 (951)
Q Consensus 21 ~~~~~~l~~~~~~l~e~~---rp~~l~~lvG~~------~~i~~l~~~l~-~--~~~~~iLL~GppGtGKTtla~~la~~ 88 (951)
.++..+|+..-..+..++ .+..+.++-..+ .-+..|-..|. . ....-++|+||||+|||||+..++..
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~i~TG~~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~ 84 (356)
T 3hr8_A 5 KQKKSVLEKALKRIEENFGKGSIMILGDETQVQPVEVIPTGSLAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAE 84 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTSSCCTTCCSCCCCCCEECCSCHHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhCCCCceechhccccCCCceecCCCHHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 445566666665555555 222333332111 11233333333 2 12234688999999999999999988
Q ss_pred HHcCCCCCCcCCCeEEEEehhhhhc-------Cc-------cccccHHHHHHHHHHHHHhcCCCeEEEEeccccccc
Q psy14504 89 IINGEVPNSLLSKKILLLDIALLLA-------GT-------KYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIG 151 (951)
Q Consensus 89 l~~~~~~~~~~~~~~~~~~~~~l~~-------~~-------~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~ 151 (951)
+... +..++.++...... +. ......+. +...+..+.....+.+++||.+..+.+
T Consensus 85 ~~~~-------gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~-~l~~~~~l~~~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 85 AQKM-------GGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQ-ALEIVDELVRSGVVDLIVVDSVAALVP 153 (356)
T ss_dssp HHHT-------TCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHH-HHHHHHHHHHTSCCSEEEEECTTTCCC
T ss_pred HHhc-------CCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHH-HHHHHHHHhhhcCCCeEEehHhhhhcC
Confidence 7432 33444444322100 00 00112222 223333333345577999999998875
No 256
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.57 E-value=0.0024 Score=65.32 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
-+.|+||+|+|||||++.++..+
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999865
No 257
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.55 E-value=0.0057 Score=66.30 Aligned_cols=90 Identities=24% Similarity=0.317 Sum_probs=48.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc-cccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEcc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS-EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLDE 550 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iDE 550 (951)
.+++.||+|+||||+.++|+..+.... ..+.++.. ++... .....++.-.+ -|......+...+. ..+.+|++||
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~-g~i~i~~~~e~~~~-~~~~~i~~~~g-gg~~~r~~la~aL~-~~p~ilildE 248 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEE-RIISIEDTEEIVFK-HHKNYTQLFFG-GNITSADCLKSCLR-MRPDRIILGE 248 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTS-CEEEEESSCCCCCS-SCSSEEEEECB-TTBCHHHHHHHHTT-SCCSEEEECC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCC-cEEEECCeeccccc-cchhEEEEEeC-CChhHHHHHHHHhh-hCCCEEEEcC
Confidence 589999999999999999998874433 34445432 22111 00010000000 12222122223333 4568999999
Q ss_pred ccccCHHHHHHHHHHhhc
Q psy14504 551 IEKANSDVFNILLQILDD 568 (951)
Q Consensus 551 id~~~~~~~~~Ll~~le~ 568 (951)
.-. ..+.+. ++.+..
T Consensus 249 ~~~--~e~~~~-l~~~~~ 263 (330)
T 2pt7_A 249 LRS--SEAYDF-YNVLCS 263 (330)
T ss_dssp CCS--THHHHH-HHHHHT
T ss_pred CCh--HHHHHH-HHHHhc
Confidence 976 345554 344443
No 258
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.55 E-value=0.02 Score=63.97 Aligned_cols=76 Identities=17% Similarity=0.095 Sum_probs=46.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh-------------cCc-----cccccHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-------------AGT-----KYRGEFEDRLKK 127 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~-------------~~~-----~~~g~~~~~l~~ 127 (951)
.-++++|++|+||||++..||..+... +..+..+++.... .+. ....+....+..
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~-------G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~ 173 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKR-------GYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKE 173 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTT-------TCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHC-------CCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHH
Confidence 346888999999999999999988653 4444444432110 000 011233334556
Q ss_pred HHHHHHhcCCCeEEEEeccccc
Q psy14504 128 ILKEISNNQKDIIIFIDELHTM 149 (951)
Q Consensus 128 ~~~~a~~~~~~~iL~iDEid~l 149 (951)
.+..+...+ .-+++||.+..+
T Consensus 174 al~~a~~~~-~DvVIIDTaGrl 194 (443)
T 3dm5_A 174 GVDYFKSKG-VDIIIVDTAGRH 194 (443)
T ss_dssp HHHHHHHTT-CSEEEEECCCCS
T ss_pred HHHHHHhCC-CCEEEEECCCcc
Confidence 677776432 348999988654
No 259
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.54 E-value=0.0013 Score=64.37 Aligned_cols=24 Identities=38% Similarity=0.603 Sum_probs=22.6
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..++|.|+||+||||+++.||+.+
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999998
No 260
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.52 E-value=0.0058 Score=63.84 Aligned_cols=26 Identities=31% Similarity=0.528 Sum_probs=23.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhcc
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFN 496 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~ 496 (951)
..++++||+|+||||+.++|+..+..
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g~~~~ 51 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMIDYINQ 51 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHHhCCC
Confidence 46899999999999999999998743
No 261
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.52 E-value=0.0014 Score=63.64 Aligned_cols=23 Identities=17% Similarity=0.208 Sum_probs=21.7
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.|+|.|+||+||||+++.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999999998
No 262
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.50 E-value=0.0012 Score=64.00 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=27.5
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEE
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLL 106 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~ 106 (951)
...+|+|.|+|||||||+++.||+.+ +.+++..
T Consensus 6 ~~~~i~l~G~~GsGKSTva~~La~~l----------g~~~id~ 38 (168)
T 1zuh_A 6 HMQHLVLIGFMGSGKSSLAQELGLAL----------KLEVLDT 38 (168)
T ss_dssp --CEEEEESCTTSSHHHHHHHHHHHH----------TCCEEEH
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHh----------CCCEEEC
Confidence 34689999999999999999999998 7777644
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.49 E-value=0.0014 Score=64.09 Aligned_cols=35 Identities=14% Similarity=0.392 Sum_probs=28.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 509 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 509 (951)
.++++|+||+||||+|+.|++.+ +.+++.++...+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l---~~~~~~~~~D~~ 39 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVL---PEPWLAFGVDSL 39 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS---SSCEEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---CCCeEEeccchH
Confidence 58899999999999999999998 446665554433
No 264
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.49 E-value=0.0082 Score=64.11 Aligned_cols=27 Identities=19% Similarity=0.207 Sum_probs=22.8
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
..-++|+||||+|||||++.+|..+..
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~~~ 61 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQWGT 61 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 345788999999999999999988753
No 265
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=96.48 E-value=0.012 Score=67.15 Aligned_cols=72 Identities=14% Similarity=0.158 Sum_probs=48.5
Q ss_pred eEEEEecccccccCCCCCCchhHHhhhhhhcc---CCcEEEEEeecchHHHHhhhcCHHHhhcceE-EEeeCCCHHHHHH
Q psy14504 139 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELS---RGELHCIGATTLNEYRQYIEKDAAFERRFQK-ILVEEPDIEETIS 214 (951)
Q Consensus 139 ~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le---~~~i~vI~at~~~~~~~~~~~~~~l~~Rf~~-i~~~~p~~~er~~ 214 (951)
.+|+|||++.++... ...+.+.+..+.. .-.+.+|.+|.++. ...++..+++-|.. |-|...+..+...
T Consensus 299 ivlvIDE~~~ll~~~----~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~---~dvl~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 299 IVVLVDEFADLMMTV----GKKVEELIARLAQKARAAGIHLVLATQRPS---VDVITGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp EEEEEETHHHHHHHH----HHHHHHHHHHHHHHCGGGTEEEEEEESCCC---TTTSCHHHHHHCCEEEEECCSSHHHHHH
T ss_pred EEEEEeCHHHHHhhh----hHHHHHHHHHHHHHhhhCCcEEEEEecCCc---cccccHHHHhhcCCeEEEEcCCHHHHHH
Confidence 589999998886521 1233334443333 22577788887764 12477788888874 9999999998888
Q ss_pred HHH
Q psy14504 215 ILR 217 (951)
Q Consensus 215 il~ 217 (951)
|+.
T Consensus 372 ilg 374 (512)
T 2ius_A 372 ILD 374 (512)
T ss_dssp HHS
T ss_pred hcC
Confidence 874
No 266
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.47 E-value=0.0016 Score=64.15 Aligned_cols=29 Identities=21% Similarity=0.386 Sum_probs=24.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIR 503 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~ 503 (951)
.++|+|||||||||+|+.||+.+ +.+++.
T Consensus 7 ~i~l~G~~GsGKst~a~~La~~l---~~~~i~ 35 (185)
T 3trf_A 7 NIYLIGLMGAGKTSVGSQLAKLT---KRILYD 35 (185)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---CCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCEEE
Confidence 68999999999999999999998 445443
No 267
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.46 E-value=0.0025 Score=66.17 Aligned_cols=22 Identities=27% Similarity=0.436 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHH
Q psy14504 472 SFMFLGPTGVGKTELCKTLSAC 493 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~ 493 (951)
.+.+.||+|+||||+++.|+..
T Consensus 32 ~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 32 TVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 5889999999999999999843
No 268
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=96.46 E-value=0.0063 Score=62.85 Aligned_cols=37 Identities=22% Similarity=0.250 Sum_probs=28.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
.++++||||+|||++|..++......+..++.++..+
T Consensus 25 ~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 25 VVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 5899999999999999888776655556666666543
No 269
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.46 E-value=0.0044 Score=65.85 Aligned_cols=34 Identities=29% Similarity=0.450 Sum_probs=26.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
.++|.||||+||||+|+.|++.+ ......++...
T Consensus 35 livl~G~sGsGKSTla~~L~~~~---~~~~~~Is~D~ 68 (287)
T 1gvn_B 35 AFLLGGQPGSGKTSLRSAIFEET---QGNVIVIDNDT 68 (287)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHT---TTCCEEECTHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---CCCeEEEechH
Confidence 68899999999999999999876 22455566533
No 270
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=96.45 E-value=0.0015 Score=64.32 Aligned_cols=32 Identities=38% Similarity=0.559 Sum_probs=27.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEe
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLD 107 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~ 107 (951)
..|+|+|+||+||||+++.|++.+ +..++..|
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l----------g~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKAL----------GVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHH----------TCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHc----------CCCEEeCc
Confidence 468999999999999999999998 66666433
No 271
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.45 E-value=0.0051 Score=63.45 Aligned_cols=37 Identities=27% Similarity=0.367 Sum_probs=28.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhcc------CCCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFN------NEESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~------~~~~~~~~~~~~ 508 (951)
.++|+||||+|||++++.++..... .+...+.++..+
T Consensus 26 ~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 26 ITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 5889999999999999999985321 245667776654
No 272
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.44 E-value=0.017 Score=68.27 Aligned_cols=46 Identities=17% Similarity=0.262 Sum_probs=36.0
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHH
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSA 492 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~ 492 (951)
..++|.+..+..+...+.... .....++++||+|+|||++|+.+++
T Consensus 124 ~~~vGR~~~l~~L~~~L~~~~-------~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 124 VVFVTRKKLVNAIQQKLSKLK-------GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp SSCCCCHHHHHHHHHHHTTST-------TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CeecccHHHHHHHHHHHhccc-------CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 458899999999988886321 1123688999999999999998864
No 273
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.42 E-value=0.0046 Score=62.64 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=27.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
.++++||||+|||++++.++. . .+..++.++...
T Consensus 22 ~~~i~G~~GsGKTtl~~~l~~-~--~~~~v~~i~~~~ 55 (220)
T 2cvh_A 22 LTQVYGPYASGKTTLALQTGL-L--SGKKVAYVDTEG 55 (220)
T ss_dssp EEEEECSTTSSHHHHHHHHHH-H--HCSEEEEEESSC
T ss_pred EEEEECCCCCCHHHHHHHHHH-H--cCCcEEEEECCC
Confidence 589999999999999999998 2 255677776654
No 274
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=96.41 E-value=0.0012 Score=65.08 Aligned_cols=26 Identities=35% Similarity=0.511 Sum_probs=23.1
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHH-H
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQR-I 89 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~-l 89 (951)
....|+|+|+|||||||+++.|++. +
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~ 35 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELD 35 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3457899999999999999999998 5
No 275
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.40 E-value=0.0082 Score=65.81 Aligned_cols=83 Identities=18% Similarity=0.262 Sum_probs=49.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCC--C-cccccc----chhHHHHHhCCCe
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPG--Y-IGYEEG----GYLTEIVRRKPYS 544 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~--~-~g~~~~----~~l~~~~~~~~~~ 544 (951)
.++++||||+|||++|..++..+...+.++..++...-.... ....+|.... + ...... ..+...++....+
T Consensus 76 li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~-~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 76 ITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPV-YARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHH-HHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred EEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHH-HHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 588999999999999999988775556677778765433221 1111222111 0 000111 1222233445678
Q ss_pred EEEEccccccC
Q psy14504 545 LILLDEIEKAN 555 (951)
Q Consensus 545 vl~iDEid~~~ 555 (951)
+|+||.+..+.
T Consensus 155 lVVIDsl~~l~ 165 (366)
T 1xp8_A 155 VVVVDSVAALT 165 (366)
T ss_dssp EEEEECTTTCC
T ss_pred EEEEeChHHhc
Confidence 99999997664
No 276
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=96.37 E-value=0.007 Score=66.15 Aligned_cols=83 Identities=18% Similarity=0.246 Sum_probs=50.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhchhcccCCCCCC--c-cccccc----hhHHHHHhCCCe
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHSISRLIGAPPGY--I-GYEEGG----YLTEIVRRKPYS 544 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~--~-g~~~~~----~l~~~~~~~~~~ 544 (951)
.++++||||+|||++|..++..+...+.++..++...-.+... ...+|..... + ...... .+...++.....
T Consensus 65 ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~-a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 65 IVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY-ARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHH-HHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHH-HHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 5899999999999999999987765566788888754332211 1112221100 0 000111 122233456678
Q ss_pred EEEEccccccC
Q psy14504 545 LILLDEIEKAN 555 (951)
Q Consensus 545 vl~iDEid~~~ 555 (951)
+|+||.+..+.
T Consensus 144 lVVIDsl~~l~ 154 (356)
T 1u94_A 144 VIVVDSVAALT 154 (356)
T ss_dssp EEEEECGGGCC
T ss_pred EEEEcCHHHhc
Confidence 99999998765
No 277
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.36 E-value=0.0067 Score=66.32 Aligned_cols=120 Identities=13% Similarity=0.242 Sum_probs=62.7
Q ss_pred CCCCccccHHHHHHHHHHHHcCCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh-hhhhcC------
Q psy14504 42 KLDPVIGRDDEIRRAIQVLQRRSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI-ALLLAG------ 114 (951)
Q Consensus 42 ~l~~lvG~~~~i~~l~~~l~~~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~-~~l~~~------ 114 (951)
+++++ |..+.++.+ .......++++||+|+||||+.++++..+.... +..++.+.- ......
T Consensus 105 ~l~~l-g~~~~l~~l----~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~------~~~i~t~ed~~e~~~~~~~~~v 173 (356)
T 3jvv_A 105 TMEEL-GMGEVFKRV----SDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTK------YHHILTIEDPIEFVHESKKCLV 173 (356)
T ss_dssp CTTTT-TCCHHHHHH----HHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHC------CCEEEEEESSCCSCCCCSSSEE
T ss_pred CHHHc-CChHHHHHH----HhCCCCEEEEECCCCCCHHHHHHHHHhcccCCC------CcEEEEccCcHHhhhhccccce
Confidence 44444 333444444 233445789999999999999999998874320 112222110 000000
Q ss_pred -ccccccHHHHHHHHHHHHHhcCCCeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchH
Q psy14504 115 -TKYRGEFEDRLKKILKEISNNQKDIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNE 184 (951)
Q Consensus 115 -~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~ 184 (951)
....+.....+...+..+.. ..|-+|++||+-. .+....+....+.|.. +|.++...+
T Consensus 174 ~q~~~~~~~~~~~~~La~aL~-~~PdvillDEp~d----------~e~~~~~~~~~~~G~~-vl~t~H~~~ 232 (356)
T 3jvv_A 174 NQREVHRDTLGFSEALRSALR-EDPDIILVGEMRD----------LETIRLALTAAETGHL-VFGTLHTTS 232 (356)
T ss_dssp EEEEBTTTBSCHHHHHHHHTT-SCCSEEEESCCCS----------HHHHHHHHHHHHTTCE-EEEEESCSS
T ss_pred eeeeeccccCCHHHHHHHHhh-hCcCEEecCCCCC----------HHHHHHHHHHHhcCCE-EEEEEccCh
Confidence 00001000123335555553 4577999999951 3444555555566655 566666544
No 278
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.35 E-value=0.0055 Score=63.81 Aligned_cols=36 Identities=25% Similarity=0.404 Sum_probs=28.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 509 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 509 (951)
..++|.||||+||||+|+.|++.+ +...+.++...+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l---~~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF---QGNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT---TTCCEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc---CCCcEEEecHHH
Confidence 368999999999999999999987 334555665544
No 279
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.33 E-value=0.013 Score=60.19 Aligned_cols=24 Identities=17% Similarity=0.297 Sum_probs=21.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
.+++++||+|+|||.++..++..+
T Consensus 109 ~~~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 109 KRGCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp SEEEEEESSSTTHHHHHHHHHHHS
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHc
Confidence 459999999999999998888765
No 280
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=96.32 E-value=0.0024 Score=63.92 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=22.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|+|||||||||+|+.||+.+
T Consensus 27 ~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 27 RIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999998
No 281
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.31 E-value=0.0021 Score=66.94 Aligned_cols=32 Identities=25% Similarity=0.292 Sum_probs=27.1
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
.++|+|||||||||+|+.||+.+ +..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~----------~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET----------GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----------CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC----------CCeEEeccH
Confidence 46889999999999999999998 667776553
No 282
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.31 E-value=0.014 Score=68.29 Aligned_cols=27 Identities=30% Similarity=0.448 Sum_probs=23.8
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
...+++.|||||||||++.+++..+..
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 467899999999999999999988754
No 283
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=96.30 E-value=0.0028 Score=61.58 Aligned_cols=25 Identities=44% Similarity=0.636 Sum_probs=22.8
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
...+.|+||||+||||+++.||..+
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 3578999999999999999999987
No 284
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.30 E-value=0.0016 Score=64.56 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.6
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
+..|+|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHc
Confidence 3467899999999999999999988
No 285
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=96.29 E-value=0.0065 Score=62.02 Aligned_cols=37 Identities=32% Similarity=0.389 Sum_probs=27.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhcc------CCCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFN------NEESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~------~~~~~~~~~~~~ 508 (951)
.+.++||+|+||||+++.|+..+.. .....+.++...
T Consensus 27 ~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 27 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 5889999999999999999985522 133455665543
No 286
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.27 E-value=0.0031 Score=63.10 Aligned_cols=23 Identities=30% Similarity=0.590 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.|++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999988
No 287
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.26 E-value=0.0031 Score=61.18 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.||||+||||+|+.|++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999988
No 288
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=96.26 E-value=0.0022 Score=65.35 Aligned_cols=26 Identities=38% Similarity=0.588 Sum_probs=23.5
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l 89 (951)
++..|+|.|+||+||||+++.||+.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 34578999999999999999999998
No 289
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=96.26 E-value=0.0023 Score=66.36 Aligned_cols=24 Identities=25% Similarity=0.432 Sum_probs=20.4
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQR 88 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~ 88 (951)
..-+.|+||+|+|||||++.++..
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~~~ 53 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHH
Confidence 345789999999999999999843
No 290
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.25 E-value=0.0055 Score=65.54 Aligned_cols=100 Identities=20% Similarity=0.221 Sum_probs=54.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEec
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDE 145 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDE 145 (951)
..++|+||+||||||++..||+.+ +..++..|.-....+. ..|... .... +.. +-| -.|+|.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l----------~~~iis~Ds~qvy~~~-~igTak-p~~~---e~~--gvp-h~lid~ 67 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL----------PCELISVDSALIYRGM-DIGTAK-PSRE---LLA--RYP-HRLIDI 67 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----------CEEEEEECTTTTBTTC-CTTTTC-CCHH---HHH--HSC-EETSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc----------CCcEEeccchhhhcCC-CcccCC-CCHH---HHc--CCC-EEEeec
Confidence 368899999999999999999998 6777776643322111 111100 0000 111 113 366776
Q ss_pred ccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecch
Q psy14504 146 LHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN 183 (951)
Q Consensus 146 id~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~ 183 (951)
.+-................+..++.+++++|+.-++..
T Consensus 68 ~~~~~~~~~~~F~~~a~~~i~~i~~~g~~~IlvGGt~~ 105 (323)
T 3crm_A 68 RDPAESYSAAEFRADALAAMAKATARGRIPLLVGGTML 105 (323)
T ss_dssp BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred cCcccccCHHHHHHHHHHHHHHHHHcCCeEEEECCchh
Confidence 65432111111122344556666677776666555544
No 291
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=96.24 E-value=0.0025 Score=61.94 Aligned_cols=24 Identities=25% Similarity=0.466 Sum_probs=22.5
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..|+|.|+||+||||+++.|++.+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998
No 292
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=96.22 E-value=0.0024 Score=63.93 Aligned_cols=25 Identities=32% Similarity=0.587 Sum_probs=22.7
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
+..|+|+|+||+||||+++.|++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999999988
No 293
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.21 E-value=0.035 Score=58.99 Aligned_cols=95 Identities=18% Similarity=0.252 Sum_probs=53.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhcc-CCCceEEeccccccchh-----chhcccCCCCCCccccccchhHHHH-HhCCC
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFN-NEESIIRIDMSEFIEKH-----SISRLIGAPPGYIGYEEGGYLTEIV-RRKPY 543 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~-~~~~~~~~~~~~~~~~~-----~~~~l~g~~~~~~g~~~~~~l~~~~-~~~~~ 543 (951)
..++|+||+|+||||++..||..+.. .+..+..+++..+.... ......|.+. +...+ ...+...+ ....+
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~r~~a~eqL~~~~~~~gl~~-~~~~~-~~~l~~al~~~~~~ 183 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTYRIAAVEQLKTYAELLQAPL-EVCYT-KEEFQQAKELFSEY 183 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCSSTTHHHHHHHHHTTTTCCC-CBCSS-HHHHHHHHHHGGGS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcccchHHHHHHHHHHhcCCCe-EecCC-HHHHHHHHHHhcCC
Confidence 37899999999999999999988863 56566666654432111 0111222211 11111 12232222 23456
Q ss_pred eEEEEccccccC--HHHHHHHHHHhh
Q psy14504 544 SLILLDEIEKAN--SDVFNILLQILD 567 (951)
Q Consensus 544 ~vl~iDEid~~~--~~~~~~Ll~~le 567 (951)
.+++||-....+ ......|..++.
T Consensus 184 dlvIiDT~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 184 DHVFVDTAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp SEEEEECCCCCTTSHHHHHHHHHHSC
T ss_pred CEEEEeCCCCChhhHHHHHHHHHHHh
Confidence 899999765443 334455555553
No 294
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.21 E-value=0.0029 Score=63.40 Aligned_cols=25 Identities=28% Similarity=0.508 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
+..|+|+|+||+||||+++.|++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999988
No 295
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=96.19 E-value=0.0041 Score=60.77 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=19.7
Q ss_pred CcEEEcCCCCcHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQ 87 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~ 87 (951)
.|+|.|+||+||||+++.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 578999999999999999998
No 296
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.16 E-value=0.0026 Score=63.28 Aligned_cols=26 Identities=31% Similarity=0.515 Sum_probs=23.5
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l 89 (951)
.+..|+|.|+||+||||+++.|++.+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34578999999999999999999988
No 297
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=96.15 E-value=0.0047 Score=60.18 Aligned_cols=34 Identities=15% Similarity=0.340 Sum_probs=26.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 509 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 509 (951)
..++|.||||+||||+++.|+..+ + ...++..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~---g--~~~i~~d~~ 42 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL---H--AAFLDGDFL 42 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH---T--CEEEEGGGG
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh---C--cEEEeCccc
Confidence 368899999999999999999887 3 344554444
No 298
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.14 E-value=0.0091 Score=65.89 Aligned_cols=86 Identities=20% Similarity=0.347 Sum_probs=48.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccC-CCceEEeccc-cccchhchhcccCCCCCCccc-----cc---cchhHHHHHh
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDMS-EFIEKHSISRLIGAPPGYIGY-----EE---GGYLTEIVRR 540 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~g~-----~~---~~~l~~~~~~ 540 (951)
..++++||+|+||||+.++|+..+... ...++.++-+ ++.. ....+++.. +. ...+...++.
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~~~--------~~~~~~v~Q~~~g~~~~~~~~~l~~~L~~ 208 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF--------KHKKSIVNQREVGEDTKSFADALRAALRE 208 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCSCC--------CCSSSEEEEEEBTTTBSCSHHHHHHHTTS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhhhh--------ccCceEEEeeecCCCHHHHHHHHHHHhhh
Confidence 468999999999999999999987543 3455444321 1110 001111111 11 1223333444
Q ss_pred CCCeEEEEccccccCHHHHHHHHHHhh
Q psy14504 541 KPYSLILLDEIEKANSDVFNILLQILD 567 (951)
Q Consensus 541 ~~~~vl~iDEid~~~~~~~~~Ll~~le 567 (951)
.+.+|++||+- ++.....+++...
T Consensus 209 -~pd~illdE~~--d~e~~~~~l~~~~ 232 (372)
T 2ewv_A 209 -DPDVIFVGEMR--DLETVETALRAAE 232 (372)
T ss_dssp -CCSEEEESCCC--SHHHHHHHHHHHT
T ss_pred -CcCEEEECCCC--CHHHHHHHHHHHh
Confidence 56899999996 4444444445444
No 299
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=96.13 E-value=0.0033 Score=60.81 Aligned_cols=28 Identities=21% Similarity=0.529 Sum_probs=24.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceE
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESII 502 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~ 502 (951)
+++|.|+|||||||+|+.||+.+ +.+++
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~l---g~~~i 36 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLAL---KLEVL 36 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH---TCCEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHh---CCCEE
Confidence 79999999999999999999988 44544
No 300
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.12 E-value=0.0028 Score=61.81 Aligned_cols=23 Identities=30% Similarity=0.644 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.||||+||||+|+.||+.+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 48999999999999999999988
No 301
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.12 E-value=0.0029 Score=62.71 Aligned_cols=37 Identities=19% Similarity=0.204 Sum_probs=29.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
.++|.|+||+||||+|+.|++.+...+..+..++.++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~ 39 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGD 39 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECCh
Confidence 4889999999999999999999854444566665443
No 302
>1xm7_A Hypothetical protein AQ_1665; structural genomics, protein structure initi midwest center for structural genomics, PSI, MCSG, unknown; 2.40A {Aquifex aeolicus} SCOP: d.159.1.8
Probab=96.11 E-value=0.0035 Score=62.43 Aligned_cols=45 Identities=24% Similarity=0.344 Sum_probs=37.2
Q ss_pred CCccceeecccccCCcceEehhHHHHHhcCCccEEEcCCChHHHH
Q psy14504 706 SPEANFIFLGDLINKGPQSLDTLRMVYSMRNYAKIVLGNHEIHLL 750 (951)
Q Consensus 706 ~~~~~li~~gd~~~~g~~~~~~l~~~~~~~~~~~~v~GNHe~~~l 750 (951)
...|.++++||++++|+...++++++.++...+.+|+||||....
T Consensus 42 ~~~D~vi~~GDl~~~~~~~~~~~~~l~~l~~~~~~v~GNhD~~~~ 86 (195)
T 1xm7_A 42 KPEDTLYHLGDFTWHFNDKNEYLRIWKALPGRKILVMGNHDKDKE 86 (195)
T ss_dssp CTTCEEEECSCCBSCSCCTTSHHHHHHHSSSEEEEECCTTCCCHH
T ss_pred CCCCEEEECCCCCCCchhHHHHHHHHHHCCCCEEEEeCCCCCchh
Confidence 356899999999999877778889988886568899999997653
No 303
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.11 E-value=0.0056 Score=60.11 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=19.7
Q ss_pred cEEEcCCCCcHH-HHHHHHHHHHHc
Q psy14504 68 PVLIGEPGVGKT-AIVEGLAQRIIN 91 (951)
Q Consensus 68 iLL~GppGtGKT-tla~~la~~l~~ 91 (951)
.+++||.|+||| .|.+++.+....
T Consensus 23 ~fiyG~MgsGKTt~Ll~~i~n~~~~ 47 (195)
T 1w4r_A 23 QVILGPMFSGKSTELMRRVRRFQIA 47 (195)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHc
Confidence 467899999999 788888887644
No 304
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.07 E-value=0.012 Score=65.44 Aligned_cols=23 Identities=30% Similarity=0.329 Sum_probs=19.3
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
-++|+||||+|||||++.++-..
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~ 202 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTC 202 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEEcCCCCChHHHHHHHHHHh
Confidence 36899999999999999887543
No 305
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.07 E-value=0.011 Score=60.70 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=48.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec-cccccchh--chhcccCCC-CC-Cccccc---------cchhHHH
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRID-MSEFIEKH--SISRLIGAP-PG-YIGYEE---------GGYLTEI 537 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~-~~~~~~~~--~~~~l~g~~-~~-~~g~~~---------~~~l~~~ 537 (951)
.++++||+|+|||.+|.+++..+ +..++.+- ..++.... .... +|.. .+ +.|... -..+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~---~~~~liv~P~~~L~~q~~~~~~~-~~~~~v~~~~g~~~~~~~i~v~T~~~l~~~ 185 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINEL---STPTLIVVPTLALAEQWKERLGI-FGEEYVGEFSGRIKELKPLTVSTYDSAYVN 185 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHS---CSCEEEEESSHHHHHHHHHHHGG-GCGGGEEEESSSCBCCCSEEEEEHHHHHHT
T ss_pred CEEEEeCCCCCHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHh-CCCCeEEEEeCCCCCcCCEEEEeHHHHHhh
Confidence 48999999999999999888776 33443333 32333221 1111 2211 00 001000 0111111
Q ss_pred HH--hCCCeEEEEccccccCHHHHHHHHHHh
Q psy14504 538 VR--RKPYSLILLDEIEKANSDVFNILLQIL 566 (951)
Q Consensus 538 ~~--~~~~~vl~iDEid~~~~~~~~~Ll~~l 566 (951)
.. ....++|+|||++.+.......++..+
T Consensus 186 ~~~~~~~~~llIiDEaH~l~~~~~~~i~~~~ 216 (237)
T 2fz4_A 186 AEKLGNRFMLLIFDEVHHLPAESYVQIAQMS 216 (237)
T ss_dssp HHHHTTTCSEEEEECSSCCCTTTHHHHHHTC
T ss_pred HHHhcccCCEEEEECCccCCChHHHHHHHhc
Confidence 11 134689999999999876655555544
No 306
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=96.06 E-value=0.0047 Score=63.90 Aligned_cols=26 Identities=23% Similarity=0.423 Sum_probs=23.4
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l 89 (951)
.+..|+|.||||+||||+++.|++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 44568999999999999999999988
No 307
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.05 E-value=0.015 Score=61.51 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIF 495 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~ 495 (951)
.++++||||+|||+++..++..+.
T Consensus 32 i~~i~G~~GsGKTtl~~~l~~~~~ 55 (279)
T 1nlf_A 32 VGALVSPGGAGKSMLALQLAAQIA 55 (279)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHh
Confidence 588999999999999999997653
No 308
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.04 E-value=0.018 Score=60.81 Aligned_cols=28 Identities=29% Similarity=0.423 Sum_probs=23.4
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHHcC
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRIING 92 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~~~ 92 (951)
..-++|+||||+|||||+..++..+..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~~~g 57 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQIAGG 57 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHHHTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHhcC
Confidence 3457899999999999999999876543
No 309
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.04 E-value=0.046 Score=60.98 Aligned_cols=25 Identities=32% Similarity=0.313 Sum_probs=22.1
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
-++++||+|+||||++..||..+..
T Consensus 99 vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 99 IIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp EEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999998855
No 310
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.02 E-value=0.0044 Score=60.76 Aligned_cols=23 Identities=39% Similarity=0.596 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|+|+||+||||+++.|++.+
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEeCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 311
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=96.01 E-value=0.0035 Score=64.42 Aligned_cols=25 Identities=36% Similarity=0.574 Sum_probs=23.1
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
+..|+|.|+||+||||+++.||+.+
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578999999999999999999998
No 312
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.01 E-value=0.0029 Score=61.53 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=19.8
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.|+|+||||+||||+++.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 5789999999999999999 666
No 313
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.00 E-value=0.0036 Score=61.88 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=27.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
.++|.||||+||||+|+.|++.+...+.++..++.++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~ 41 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGS 41 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHH
Confidence 5899999999999999999998843332244455443
No 314
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=96.00 E-value=0.0044 Score=62.18 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=21.4
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.|+|.||||+||+|.|+.||+.+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37889999999999999999988
No 315
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=96.00 E-value=0.0045 Score=64.44 Aligned_cols=32 Identities=22% Similarity=0.400 Sum_probs=26.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 506 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 506 (951)
.+++.||||+||||+|+.||+.+ +..++..|.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~---~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET---GWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---CCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcC---CCeEEeccH
Confidence 47899999999999999999988 445555543
No 316
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.99 E-value=0.015 Score=68.78 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=20.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIF 495 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~ 495 (951)
.+++.||||||||+++..+...+.
T Consensus 166 ~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 166 ISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp EEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHH
Confidence 589999999999999888877664
No 317
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.98 E-value=0.0029 Score=62.72 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=22.1
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..|+|.|+||+||||+++.|++.+
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999988
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.98 E-value=0.0039 Score=61.31 Aligned_cols=23 Identities=22% Similarity=0.518 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 38999999999999999999988
No 319
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.97 E-value=0.0035 Score=60.60 Aligned_cols=23 Identities=26% Similarity=0.271 Sum_probs=21.7
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.|+|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 320
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=95.97 E-value=0.0029 Score=62.56 Aligned_cols=25 Identities=28% Similarity=0.371 Sum_probs=22.6
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
..|+|.|+||+||||+++.|++.+.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999999883
No 321
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.97 E-value=0.006 Score=60.31 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=22.0
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~ 90 (951)
.|+|.|+||+||||+++.|++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999984
No 322
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.96 E-value=0.0054 Score=66.15 Aligned_cols=42 Identities=31% Similarity=0.491 Sum_probs=31.0
Q ss_pred ccHHHHHHHHHHHH----cCCCCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 48 GRDDEIRRAIQVLQ----RRSKNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 48 G~~~~i~~l~~~l~----~~~~~~iLL~GppGtGKTtla~~la~~l 89 (951)
..+...+.++..+. .....+++|+|+||+||||++++||+.+
T Consensus 3 ~~~~L~~~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 3 DTHKLADDVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp CHHHHHHHHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 34444555555443 3445579999999999999999999987
No 323
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.95 E-value=0.0076 Score=62.75 Aligned_cols=24 Identities=29% Similarity=0.313 Sum_probs=21.9
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..++|.|+||+||||+++.|++.+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l 56 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEF 56 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999987
No 324
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=95.95 E-value=0.008 Score=68.45 Aligned_cols=25 Identities=32% Similarity=0.470 Sum_probs=21.5
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
-+++.|+||+||||++..+|..+..
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~ 229 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVAT 229 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3688899999999999999987753
No 325
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=95.94 E-value=0.024 Score=61.04 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.5
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
-++|.|+||+|||+++..+|.....
T Consensus 70 l~li~G~pG~GKTtl~l~ia~~~a~ 94 (315)
T 3bh0_A 70 FVLIAARPSMGKTAFALKQAKNMSD 94 (315)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4688899999999999999977654
No 326
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.93 E-value=0.0047 Score=60.84 Aligned_cols=24 Identities=33% Similarity=0.638 Sum_probs=22.1
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..|+|.|+||+||||+++.|++.+
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999999988
No 327
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.93 E-value=0.0028 Score=64.22 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=21.4
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.|+|+||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 328
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=95.93 E-value=0.0039 Score=60.55 Aligned_cols=23 Identities=26% Similarity=0.690 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.|+||||+||||+++.||..+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l 28 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQL 28 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999987
No 329
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.93 E-value=0.0029 Score=64.44 Aligned_cols=26 Identities=19% Similarity=0.299 Sum_probs=23.7
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l 89 (951)
.+..|+|.|+||+||||+++.||+.+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34678999999999999999999998
No 330
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=95.93 E-value=0.0047 Score=60.85 Aligned_cols=36 Identities=17% Similarity=0.472 Sum_probs=27.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
.++|+|+|||||||+++.|++.+. .+..+++.++..
T Consensus 12 ~I~l~G~~GsGKSTv~~~La~~l~----g~~~id~d~~~~ 47 (184)
T 1y63_A 12 NILITGTPGTGKTSMAEMIAAELD----GFQHLEVGKLVK 47 (184)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHST----TEEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC----CCEEeeHHHHHH
Confidence 699999999999999999999831 345556555443
No 331
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.92 E-value=0.0035 Score=63.47 Aligned_cols=23 Identities=39% Similarity=0.653 Sum_probs=21.5
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.|+|.||||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 332
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=95.92 E-value=0.027 Score=55.33 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=25.4
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHHHcC
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRIING 92 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l~~~ 92 (951)
....|++++++|.||||+|-.+|-+....
T Consensus 27 ~~g~i~v~tG~GkGKTTaA~GlalRA~g~ 55 (196)
T 1g5t_A 27 ERGIIIVFTGNGKGKTTAAFGTAARAVGH 55 (196)
T ss_dssp CCCCEEEEESSSSCHHHHHHHHHHHHHHT
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHC
Confidence 46789999999999999999999887654
No 333
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.92 E-value=0.0031 Score=64.48 Aligned_cols=25 Identities=24% Similarity=0.529 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
+..|+|.|+||+||||+++.|++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHc
Confidence 4568999999999999999999987
No 334
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.91 E-value=0.007 Score=59.39 Aligned_cols=91 Identities=13% Similarity=0.078 Sum_probs=49.9
Q ss_pred EEEEeCCCCCcHH-HHHHHHHHHhccCCCceEEeccc---cccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEE
Q psy14504 472 SFMFLGPTGVGKT-ELCKTLSACIFNNEESIIRIDMS---EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLIL 547 (951)
Q Consensus 472 ~~Ll~GppGtGKT-~lA~~la~~l~~~~~~~~~~~~~---~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~ 547 (951)
-.+++||.|+||| +|.+++.+.... +.++..+... .+... -++.+ |....-+-......+....+ +..+|+
T Consensus 22 l~fiyG~MgsGKTt~Ll~~i~n~~~~-~~kvl~~kp~~D~R~~~~-i~S~~-g~~~~A~~~~~~~d~~~~~~--~~DvIl 96 (195)
T 1w4r_A 22 IQVILGPMFSGKSTELMRRVRRFQIA-QYKCLVIKYAKDTRYSSS-FCTHD-RNTMEALPACLLRDVAQEAL--GVAVIG 96 (195)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHT-TCCEEEEEETTCCCGGGS-CCHHH-HHHSEEEEESSGGGGHHHHH--TCSEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHc-CCeEEEEccccCccchhh-hhhcc-CCcccceecCCHHHHHHhcc--CCCEEE
Confidence 3678999999999 999999888754 4556555422 12111 11111 11000000111123333333 357999
Q ss_pred EccccccCHHHHHHHHHHhhc
Q psy14504 548 LDEIEKANSDVFNILLQILDD 568 (951)
Q Consensus 548 iDEid~~~~~~~~~Ll~~le~ 568 (951)
|||++-+ ++....+..+.+.
T Consensus 97 IDEaQFf-k~~ve~~~~L~~~ 116 (195)
T 1w4r_A 97 IDEGQFF-PDIVEFCEAMANA 116 (195)
T ss_dssp ESSGGGC-TTHHHHHHHHHHT
T ss_pred EEchhhh-HHHHHHHHHHHHC
Confidence 9999999 6655555444443
No 335
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.91 E-value=0.027 Score=56.68 Aligned_cols=92 Identities=10% Similarity=-0.062 Sum_probs=48.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc--ccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE--FIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 549 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~--~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iD 549 (951)
-.+++||.|+|||+.+-..+.-....+.++..+...- -......+++ |....-.+......+...+ .+..+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~-G~~~~a~~i~~~~di~~~~--~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHD-RNTMEALPACLLRDVAQEA--LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC------------CEEEEESSGGGGHHHH--TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhc-CCeeEEEecCCHHHHHHHh--ccCCEEEEE
Confidence 4678999999999777666555555566666554221 0011111111 2221111111112233333 456899999
Q ss_pred cccccCHHHHHHHHHHhhc
Q psy14504 550 EIEKANSDVFNILLQILDD 568 (951)
Q Consensus 550 Eid~~~~~~~~~Ll~~le~ 568 (951)
|+.-+.. ...+...+++
T Consensus 98 EaQF~~~--v~el~~~l~~ 114 (234)
T 2orv_A 98 EGQFFPD--IVEFCEAMAN 114 (234)
T ss_dssp SGGGCTT--HHHHHHHHHH
T ss_pred chhhhhh--HHHHHHHHHh
Confidence 9999974 5566666654
No 336
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.90 E-value=0.0036 Score=62.32 Aligned_cols=25 Identities=32% Similarity=0.484 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
+..|+|.|+||+||||+++.|++.+
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999998
No 337
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.90 E-value=0.0034 Score=63.73 Aligned_cols=24 Identities=38% Similarity=0.598 Sum_probs=22.5
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..|+|.|+||+||||+++.||+.+
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999999998
No 338
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.88 E-value=0.0047 Score=62.37 Aligned_cols=24 Identities=33% Similarity=0.558 Sum_probs=21.5
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
+-|+|.||||+||+|.|+.|++.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 346788999999999999999988
No 339
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.86 E-value=0.0059 Score=61.04 Aligned_cols=27 Identities=33% Similarity=0.592 Sum_probs=23.2
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 63 RSKNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 63 ~~~~~iLL~GppGtGKTtla~~la~~l 89 (951)
.....+.|+||+|+||||+++.|+..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 53 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADET 53 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhh
Confidence 445568899999999999999999987
No 340
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=95.84 E-value=0.0055 Score=60.64 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.|++.+
T Consensus 7 ~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 7 LIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58899999999999999999988
No 341
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.84 E-value=0.012 Score=61.49 Aligned_cols=26 Identities=35% Similarity=0.488 Sum_probs=22.8
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
+..|+|+|+||+||||+|+.|++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34688999999999999999999864
No 342
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.82 E-value=0.011 Score=62.49 Aligned_cols=99 Identities=19% Similarity=0.134 Sum_probs=52.8
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEecc
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDEL 146 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDEi 146 (951)
-+++.||+|||||+|+..+|+.+ +..++..|.-.+..+.. +|.-. .--.+. .+-| =-|||..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~QvYr~~~-igTak----p~~~E~--~gvp-hhlid~~ 66 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL----------NGEVISGDSMQVYRGMD-IGTAK----ITAEEM--DGVP-HHLIDIK 66 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT----------TEEEEECCGGGGBTTCC-TTTTC----CCHHHH--TTCC-EESSSCB
T ss_pred EEEEECCCcCCHHHHHHHHHHhC----------ccceeecCcccceeeee-ecCCC----CCHHHH--cCCC-EEEeccC
Confidence 46788999999999999999987 66666665433322211 11100 000111 1223 3566655
Q ss_pred cccccCCCCCCchhHHhhhhhhccCCcEEEEEeecch
Q psy14504 147 HTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN 183 (951)
Q Consensus 147 d~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~ 183 (951)
+---.-........+...+..+.++|++.||.=++.-
T Consensus 67 ~~~e~~s~~~F~~~a~~~i~~i~~~gk~pIlVGGTgl 103 (322)
T 3exa_A 67 DPSESFSVADFQDLATPLITEIHERGRLPFLVGGTGL 103 (322)
T ss_dssp CTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEESCCHH
T ss_pred ChhhhccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 4211100011123455566667778887766555543
No 343
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=95.82 E-value=0.015 Score=66.03 Aligned_cols=24 Identities=29% Similarity=0.422 Sum_probs=21.2
Q ss_pred cEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 68 PVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 68 iLL~GppGtGKTtla~~la~~l~~ 91 (951)
+++.|+||+|||+++..+|.....
T Consensus 203 ~ii~G~pg~GKT~lal~ia~~~a~ 226 (444)
T 2q6t_A 203 NIIAARPAMGKTAFALTIAQNAAL 226 (444)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH
Confidence 588899999999999999987754
No 344
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.82 E-value=0.006 Score=60.97 Aligned_cols=37 Identities=19% Similarity=0.320 Sum_probs=27.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
.+.|.||+|+||||++++|+..+...+...+.++...
T Consensus 27 ~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~ 63 (200)
T 3uie_A 27 VIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDN 63 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCch
Confidence 5889999999999999999998853343333555433
No 345
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.81 E-value=0.014 Score=63.72 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=20.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
-+.|+||||+|||||++.++..+
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 35799999999999999999875
No 346
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.79 E-value=0.017 Score=61.68 Aligned_cols=39 Identities=23% Similarity=0.374 Sum_probs=30.6
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 470 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 470 ~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
...++++||+|+||||++..||..+...+..+..+++..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~ 142 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADT 142 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECT
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccc
Confidence 347889999999999999999998865566666665543
No 347
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=95.78 E-value=0.0049 Score=61.80 Aligned_cols=35 Identities=29% Similarity=0.574 Sum_probs=28.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
.++|.||||+||+|.|+.||+.+ .+..++..++..
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~-----g~~~istGdllR 36 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK-----GFVHISTGDILR 36 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH-----CCEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCeEEcHHHHHH
Confidence 47899999999999999999988 455666655543
No 348
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=95.78 E-value=0.011 Score=62.37 Aligned_cols=100 Identities=18% Similarity=0.186 Sum_probs=52.9
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEEEec
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIFIDE 145 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~iDE 145 (951)
.-++++||+|+|||+|+..+|+.+ +..++..|.-.+..+.. +|.-. .. -.+.. .-| =-|||.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~----------~~~iis~Ds~qvY~~~~-igTak--p~--~~E~~--~v~-hhlid~ 72 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKIL----------PVELISVDSALIYKGMD-IGTAK--PN--AEELL--AAP-HRLLDI 72 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS----------CEEEEECCTTTTBTTCC-TTTTC--CC--HHHHH--HSC-EETSSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhC----------CCcEEeccccccccccc-ccCCC--CC--HHHHc--CCC-EEEecc
Confidence 346788999999999999999987 66777665433322111 11100 00 00111 112 255665
Q ss_pred ccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecch
Q psy14504 146 LHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLN 183 (951)
Q Consensus 146 id~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~ 183 (951)
.+---.-........+...+..+.++|++.|+.-++.-
T Consensus 73 ~~~~e~~s~~~f~~~a~~~i~~i~~~g~~pilVGGTgl 110 (316)
T 3foz_A 73 RDPSQAYSAADFRRDALAEMADITAAGRIPLLVGGTML 110 (316)
T ss_dssp BCTTSCCCHHHHHHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CCccccccHHHHHHHHHHHHHHHHhCCCcEEEEcCcHH
Confidence 44211000011123455566777788888766655543
No 349
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.77 E-value=0.0044 Score=61.30 Aligned_cols=24 Identities=25% Similarity=0.506 Sum_probs=22.2
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..|+|.|+||+||||+++.|++.+
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999999988
No 350
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.77 E-value=0.0062 Score=66.01 Aligned_cols=24 Identities=29% Similarity=0.457 Sum_probs=21.1
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
.-++|+||||+|||+++..+|...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHhHHHHHHHHHH
Confidence 346899999999999999999875
No 351
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=95.76 E-value=0.0053 Score=59.80 Aligned_cols=24 Identities=33% Similarity=0.583 Sum_probs=21.8
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..++|+||||+||||+++.++..+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~ 32 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQL 32 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhh
Confidence 357899999999999999999987
No 352
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.76 E-value=0.0036 Score=61.45 Aligned_cols=25 Identities=32% Similarity=0.351 Sum_probs=18.5
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
+..|+|.|+||+||||+++.|++.+
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhc
Confidence 3468899999999999999999987
No 353
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=95.76 E-value=0.0062 Score=60.92 Aligned_cols=23 Identities=22% Similarity=0.523 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.|++.+
T Consensus 20 ~I~l~G~~GsGKSTla~~L~~~l 42 (202)
T 3t61_A 20 SIVVMGVSGSGKSSVGEAIAEAC 42 (202)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 354
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.75 E-value=0.0053 Score=59.55 Aligned_cols=23 Identities=22% Similarity=0.544 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.|++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 355
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.75 E-value=0.004 Score=62.40 Aligned_cols=24 Identities=29% Similarity=0.493 Sum_probs=21.9
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..|+|.|+||+||||+++.|++.+
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 457899999999999999999987
No 356
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.74 E-value=0.0038 Score=61.77 Aligned_cols=24 Identities=46% Similarity=0.630 Sum_probs=21.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..++|+||||+||||+++.|+..+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 457899999999999999999753
No 357
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.72 E-value=0.0061 Score=61.93 Aligned_cols=23 Identities=26% Similarity=0.569 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.||+.+
T Consensus 6 ~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 6 RMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68999999999999999999988
No 358
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=95.71 E-value=0.0056 Score=60.53 Aligned_cols=35 Identities=14% Similarity=0.340 Sum_probs=27.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 509 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 509 (951)
.+.|.||||+||||++++|+... +...+.++..++
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~---~~g~i~i~~d~~ 45 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLP---GVPKVHFHSDDL 45 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCS---SSCEEEECTTHH
T ss_pred EEEEECCCCCCHHHHHHHHHhcc---CCCeEEEcccch
Confidence 58899999999999999999863 334556665544
No 359
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=95.70 E-value=0.0047 Score=65.64 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.5
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..++|+||||+||||+++.+++.+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~ 57 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEET 57 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999876
No 360
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.68 E-value=0.0054 Score=60.12 Aligned_cols=23 Identities=39% Similarity=0.546 Sum_probs=17.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.|++.+
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999999987
No 361
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.68 E-value=0.04 Score=62.18 Aligned_cols=37 Identities=22% Similarity=0.218 Sum_probs=28.4
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14504 470 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 506 (951)
Q Consensus 470 ~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 506 (951)
...++|+||+|+||||+++.|+..+...+..+...+.
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~ 329 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAG 329 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECC
T ss_pred CeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecC
Confidence 3468899999999999999999988554555544433
No 362
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.68 E-value=0.017 Score=62.93 Aligned_cols=23 Identities=26% Similarity=0.231 Sum_probs=20.4
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
-++|+||||+|||+++..+|...
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~ 146 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTA 146 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36899999999999999999864
No 363
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.68 E-value=0.0068 Score=58.48 Aligned_cols=23 Identities=22% Similarity=0.333 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999999988
No 364
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=95.67 E-value=0.0071 Score=61.05 Aligned_cols=35 Identities=20% Similarity=0.439 Sum_probs=28.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIE 511 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~ 511 (951)
.++|.||||+||+|.|+.|++.+ .+..++..++..
T Consensus 31 iI~llGpPGsGKgTqa~~L~~~~-----g~~hIstGdllR 65 (217)
T 3umf_A 31 VIFVLGGPGSGKGTQCEKLVQKF-----HFNHLSSGDLLR 65 (217)
T ss_dssp EEEEECCTTCCHHHHHHHHHHHH-----CCEEECHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH-----CCceEcHHHHHH
Confidence 57789999999999999999988 456666655543
No 365
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.66 E-value=0.0073 Score=59.49 Aligned_cols=27 Identities=37% Similarity=0.404 Sum_probs=23.3
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
...++|.|+||+||||+++.++..+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 345789999999999999999998843
No 366
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=95.65 E-value=0.011 Score=58.25 Aligned_cols=36 Identities=19% Similarity=0.266 Sum_probs=28.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 507 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 507 (951)
.++|.|+||+||||+++.|+..+...+..+..++..
T Consensus 15 ~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 15 VVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 688999999999999999999986555555555543
No 367
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.65 E-value=0.0046 Score=62.55 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=21.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.|+|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 368
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=95.64 E-value=0.0056 Score=61.22 Aligned_cols=29 Identities=21% Similarity=0.244 Sum_probs=24.5
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 62 RRSKNNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 62 ~~~~~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
......+.|.||||+||||+++.|+..+.
T Consensus 22 ~~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 22 DQKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp TSCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 34455678999999999999999999884
No 369
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=95.62 E-value=0.0069 Score=60.09 Aligned_cols=23 Identities=22% Similarity=0.455 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.|++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 370
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=95.62 E-value=0.0063 Score=59.02 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.||||+||||+|+.| +.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~ 24 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KER 24 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHH-HHC
Confidence 4889999999999999999 655
No 371
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=95.61 E-value=0.0057 Score=60.18 Aligned_cols=23 Identities=35% Similarity=0.693 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.|++.+
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 372
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.60 E-value=0.0067 Score=61.39 Aligned_cols=23 Identities=17% Similarity=0.359 Sum_probs=21.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.||||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999887
No 373
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.58 E-value=0.0074 Score=61.03 Aligned_cols=23 Identities=17% Similarity=0.372 Sum_probs=21.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.||||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 374
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=95.55 E-value=0.0084 Score=61.55 Aligned_cols=23 Identities=30% Similarity=0.537 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.||+.+
T Consensus 18 ~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 18 RAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999998
No 375
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.55 E-value=0.028 Score=59.42 Aligned_cols=80 Identities=14% Similarity=0.191 Sum_probs=45.0
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh-------cCcc-------ccccHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-------AGTK-------YRGEFEDRLKKILKEI 132 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~-------~~~~-------~~g~~~~~l~~~~~~a 132 (951)
-++++||||+|||||+..++....... .+..++.++..... .|.. .....++..-.+++.+
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g-----~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l 104 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQY-----PDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQL 104 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHC-----TTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcC-----CCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHH
Confidence 368889999999999988877664310 02344444432110 0000 0112222202333333
Q ss_pred --HhcCCCeEEEEeccccccc
Q psy14504 133 --SNNQKDIIIFIDELHTMIG 151 (951)
Q Consensus 133 --~~~~~~~iL~iDEid~l~~ 151 (951)
.....+.+|+||-+..|.+
T Consensus 105 ~~i~~~~~~lvVIDSI~aL~~ 125 (333)
T 3io5_A 105 DAIERGEKVVVFIDSLGNLAS 125 (333)
T ss_dssp HTCCTTCCEEEEEECSTTCBC
T ss_pred HHhhccCceEEEEeccccccc
Confidence 2345689999999999985
No 376
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.54 E-value=0.007 Score=59.93 Aligned_cols=23 Identities=26% Similarity=0.476 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.|++.+
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 377
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.50 E-value=0.02 Score=61.77 Aligned_cols=25 Identities=20% Similarity=0.404 Sum_probs=21.7
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
-++|.|+||+|||+++..+|..+..
T Consensus 48 LiiIaG~pG~GKTt~al~ia~~~a~ 72 (338)
T 4a1f_A 48 LVIIGARPSMGKTSLMMNMVLSALN 72 (338)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 4678899999999999999987754
No 378
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.50 E-value=0.012 Score=58.01 Aligned_cols=99 Identities=18% Similarity=0.154 Sum_probs=51.6
Q ss_pred cEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh--------hhh--cCccccccHHHHHHHHHHHHHhcCC
Q psy14504 68 PVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA--------LLL--AGTKYRGEFEDRLKKILKEISNNQK 137 (951)
Q Consensus 68 iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~--------~l~--~~~~~~g~~~~~l~~~~~~a~~~~~ 137 (951)
.+++||+|+||||.+..++.++... +..++.+... .+. .+.............+++.+.. .
T Consensus 11 ~v~~G~mgsGKTT~ll~~a~r~~~~-------g~kV~v~k~~~d~r~~~~~i~s~~g~~~~a~~~~~~~~i~~~~~~--~ 81 (191)
T 1xx6_A 11 EVIVGPMYSGKSEELIRRIRRAKIA-------KQKIQVFKPEIDNRYSKEDVVSHMGEKEQAVAIKNSREILKYFEE--D 81 (191)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHT-------TCCEEEEEEC-------CEEECTTSCEEECEEESSSTHHHHHCCT--T
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEeccCccchHHHHHhhcCCceeeEeeCCHHHHHHHHhc--c
Confidence 4678999999999999888887543 2233322110 000 0000000000001244444321 1
Q ss_pred CeEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchH
Q psy14504 138 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNE 184 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~ 184 (951)
.-+|+|||++.+.+ +....+..+... .+.||.++-..+
T Consensus 82 ~dvViIDEaqfl~~--------~~v~~l~~l~~~-~~~Vi~~Gl~~d 119 (191)
T 1xx6_A 82 TEVIAIDEVQFFDD--------EIVEIVNKIAES-GRRVICAGLDMD 119 (191)
T ss_dssp CSEEEECSGGGSCT--------HHHHHHHHHHHT-TCEEEEEECSBC
T ss_pred CCEEEEECCCCCCH--------HHHHHHHHHHhC-CCEEEEEecccc
Confidence 34899999998733 334455554444 567777766444
No 379
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=95.49 E-value=0.011 Score=59.11 Aligned_cols=33 Identities=18% Similarity=0.356 Sum_probs=26.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 509 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 509 (951)
.+.|.||+|+||||+++.|+..+ + .+.++...+
T Consensus 31 ~i~l~G~~GsGKSTl~~~L~~~~---g--~~~i~~d~~ 63 (200)
T 4eun_A 31 HVVVMGVSGSGKTTIAHGVADET---G--LEFAEADAF 63 (200)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH---C--CEEEEGGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHhh---C--CeEEccccc
Confidence 58899999999999999999987 3 344554444
No 380
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=95.46 E-value=0.0089 Score=59.69 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=21.5
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.|+|.|+||+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999998
No 381
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.45 E-value=0.0083 Score=62.09 Aligned_cols=25 Identities=28% Similarity=0.404 Sum_probs=23.5
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
...+.|+|++|+||||+++.||+.+
T Consensus 48 g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 48 GRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp TCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhc
Confidence 4689999999999999999999998
No 382
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=95.43 E-value=0.0076 Score=60.41 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=22.8
Q ss_pred CCCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 64 SKNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 64 ~~~~iLL~GppGtGKTtla~~la~~l 89 (951)
....++|+||||+||||+++.|++.+
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34567899999999999999999876
No 383
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.43 E-value=0.0099 Score=60.54 Aligned_cols=23 Identities=22% Similarity=0.328 Sum_probs=21.5
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.|+|.|+||+||||+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999988
No 384
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.42 E-value=0.025 Score=61.17 Aligned_cols=25 Identities=28% Similarity=0.514 Sum_probs=22.7
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
...++++||+|+||||++++++..+
T Consensus 171 g~~v~i~G~~GsGKTTll~~l~g~~ 195 (330)
T 2pt7_A 171 GKNVIVCGGTGSGKTTYIKSIMEFI 195 (330)
T ss_dssp TCCEEEEESTTSCHHHHHHHGGGGS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 4689999999999999999999875
No 385
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.41 E-value=0.0088 Score=62.54 Aligned_cols=36 Identities=25% Similarity=0.441 Sum_probs=27.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 507 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 507 (951)
.++|.|+||+||||+|+.|++.+...+..++.++..
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D 41 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSD 41 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECch
Confidence 588999999999999999999864335555544543
No 386
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.40 E-value=0.013 Score=57.31 Aligned_cols=35 Identities=20% Similarity=0.306 Sum_probs=28.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 506 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 506 (951)
.+.|.|++|+||||+++.|+..+...+.+++.++.
T Consensus 7 ~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 7 TVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 57899999999999999999987544556666654
No 387
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.40 E-value=0.016 Score=61.29 Aligned_cols=39 Identities=15% Similarity=0.176 Sum_probs=29.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccC--CCceEEecccccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNN--EESIIRIDMSEFI 510 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~--~~~~~~~~~~~~~ 510 (951)
.++++||||+|||+|+-.++...... +...++++..+-.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~ 70 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGI 70 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchh
Confidence 58999999999999987776655332 5677788876533
No 388
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.40 E-value=0.0049 Score=66.10 Aligned_cols=33 Identities=27% Similarity=0.398 Sum_probs=27.1
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEeh
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDI 108 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~ 108 (951)
..|+|+||+|||||+|+..||+.+ +..++..|.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l----------~~eiIs~Ds 73 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHF----------PLEVINSDK 73 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTS----------CEEEEECCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHC----------CCcEEcccc
Confidence 357899999999999999999988 566665543
No 389
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.39 E-value=0.011 Score=59.19 Aligned_cols=23 Identities=30% Similarity=0.522 Sum_probs=21.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.|++.+
T Consensus 17 ~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 17 VIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 68899999999999999999887
No 390
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.39 E-value=0.0077 Score=59.89 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=26.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 509 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 509 (951)
.++|.|+||+||||+|+.|++.+ + +..++..++
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l---~--~~~i~~d~~ 46 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKY---G--FTHLSTGEL 46 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CeEEcHHHH
Confidence 58999999999999999999988 3 444554444
No 391
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.38 E-value=0.085 Score=56.64 Aligned_cols=40 Identities=18% Similarity=0.249 Sum_probs=32.2
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 469 PYGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 469 p~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
+...++++||+|+||||++..||..+...+..+..+++.-
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~ 143 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADT 143 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 3447889999999999999999998866666777666643
No 392
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.38 E-value=0.033 Score=60.83 Aligned_cols=37 Identities=32% Similarity=0.408 Sum_probs=28.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccC------CCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNN------EESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~------~~~~~~~~~~~ 508 (951)
.+.++||||+|||+|++.++...... +...++++..+
T Consensus 133 i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 133 ITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 58899999999999999999876211 24557777654
No 393
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.38 E-value=0.0082 Score=58.96 Aligned_cols=24 Identities=25% Similarity=0.447 Sum_probs=21.6
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
+.|+|+||||+|||||++.|.+..
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999998775
No 394
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=95.38 E-value=0.16 Score=58.28 Aligned_cols=72 Identities=14% Similarity=0.193 Sum_probs=51.1
Q ss_pred CeEEEEcccccc----CHHHHHHHHHHhhcceeecCCCeEeecCCeEEEEecCCCchhhhhhccccHHHHHHHHHHHHHh
Q psy14504 543 YSLILLDEIEKA----NSDVFNILLQILDDGRLTDNRGRTINFRNTIIVMTSNLGSDKIKEMEKGDKEIIKLAVMNEVKI 618 (951)
Q Consensus 543 ~~vl~iDEid~~----~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~iiI~ttn~~~~~~~~~~~~~~~~~~~~~~~~~~~ 618 (951)
+-+|+|||+..+ ...+...|.++...|+ ...+.+|++|..+...
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GR----------a~GIhLIlaTQRPs~d---------------------- 391 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKAR----------AAGIHLILATQRPSVD---------------------- 391 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCT----------TTTEEEEEEESCCCTT----------------------
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHh----------hCCeEEEEEecCcccc----------------------
Confidence 468999999865 4566777777777653 2356677877765521
Q ss_pred ccChhHhhccCcEEEecCCChhhHHHHH
Q psy14504 619 YFRPEFINRIDDIIVFRYLNRKNILSIA 646 (951)
Q Consensus 619 ~f~p~l~~R~~~~i~f~~l~~~~~~~i~ 646 (951)
.++..+.+-|...|.|.--+..+...|+
T Consensus 392 ~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 392 VITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp TSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred cccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 2345667778788899999998888773
No 395
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.36 E-value=0.024 Score=58.55 Aligned_cols=23 Identities=30% Similarity=0.553 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.||||+||||+|+.|++.+
T Consensus 31 ~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 31 RYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999999987
No 396
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=95.35 E-value=0.0086 Score=60.71 Aligned_cols=23 Identities=22% Similarity=0.567 Sum_probs=21.9
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.||+.+
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999988
No 397
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.33 E-value=0.031 Score=55.78 Aligned_cols=37 Identities=24% Similarity=0.273 Sum_probs=28.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
.+.+.||+|+||||+++.|+..+...+..++..+...
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 6889999999999999999998754455565554443
No 398
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.33 E-value=0.09 Score=53.77 Aligned_cols=19 Identities=32% Similarity=0.499 Sum_probs=15.9
Q ss_pred EEEEeCCCCCcHHHHHHHH
Q psy14504 472 SFMFLGPTGVGKTELCKTL 490 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~l 490 (951)
.+++.||+|||||++...+
T Consensus 78 ~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 78 VVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp EEEEECCTTSSHHHHHHHH
T ss_pred EEEEEeCCCCCcHHhHHHH
Confidence 6899999999999766544
No 399
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=95.32 E-value=0.021 Score=56.78 Aligned_cols=95 Identities=16% Similarity=0.188 Sum_probs=49.6
Q ss_pred EEEEeCCCCCcHHH-HHHHHHHHhccCCCceEEeccc--cccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEE
Q psy14504 472 SFMFLGPTGVGKTE-LCKTLSACIFNNEESIIRIDMS--EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILL 548 (951)
Q Consensus 472 ~~Ll~GppGtGKT~-lA~~la~~l~~~~~~~~~~~~~--~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~i 548 (951)
..+++||-|+|||+ +.+.+.++. ..+.+...+... .-.....+..-.|....-+-......+...+ ..+..+|+|
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~-~~g~kvli~kp~~D~R~~~~~I~Sr~G~~~~a~~v~~~~di~~~i-~~~~dvV~I 107 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGI-YAKQKVVVFKPAIDDRYHKEKVVSHNGNAIEAINISKASEIMTHD-LTNVDVIGI 107 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH-HTTCCEEEEEEC-----------CBTTBCCEEEEESSGGGGGGSC-CTTCSEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH-HcCCceEEEEeccCCcchhhhHHHhcCCceeeEEeCCHHHHHHHH-hcCCCEEEE
Confidence 46789999999998 555554444 334454444321 1101111111112111100011111222222 235679999
Q ss_pred ccccccCHHHHHHHHHHhhc
Q psy14504 549 DEIEKANSDVFNILLQILDD 568 (951)
Q Consensus 549 DEid~~~~~~~~~Ll~~le~ 568 (951)
||++-+++++.+.|..+.+.
T Consensus 108 DEaQFf~~~~v~~l~~la~~ 127 (219)
T 3e2i_A 108 DEVQFFDDEIVSIVEKLSAD 127 (219)
T ss_dssp CCGGGSCTHHHHHHHHHHHT
T ss_pred echhcCCHHHHHHHHHHHHC
Confidence 99999999988888887754
No 400
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.30 E-value=0.0094 Score=58.88 Aligned_cols=23 Identities=26% Similarity=0.481 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.|++.+
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 401
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=95.29 E-value=0.028 Score=62.37 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=27.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhcc------CCCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFN------NEESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~------~~~~~~~~~~~~ 508 (951)
.++|+||||+|||+|++.++-.... .+...++++..+
T Consensus 180 i~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 180 ITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred EEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 5889999999999999977644321 245577777655
No 402
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.29 E-value=0.0081 Score=58.61 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=19.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q psy14504 472 SFMFLGPTGVGKTELCKTLSA 492 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~ 492 (951)
.++|.||||+||||+|+.|++
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 488999999999999999998
No 403
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=95.28 E-value=0.01 Score=63.38 Aligned_cols=32 Identities=31% Similarity=0.649 Sum_probs=26.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 506 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 506 (951)
.++++||||||||++|+.||+.+ +..++..|.
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l---~~~iis~Ds 38 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADAL---PCELISVDS 38 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEEECT
T ss_pred EEEEECCCCCCHHHHHHHHHHHc---CCcEEeccc
Confidence 58899999999999999999988 445555553
No 404
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.28 E-value=0.012 Score=58.16 Aligned_cols=34 Identities=24% Similarity=0.206 Sum_probs=26.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 505 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 505 (951)
.+.|.|+||+||||+|+.|++.+...+.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3789999999999999999998743345555543
No 405
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.28 E-value=0.0086 Score=61.16 Aligned_cols=23 Identities=17% Similarity=0.443 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.|+||+||||+|+.||+.+
T Consensus 9 ~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 9 RAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 58999999999999999999987
No 406
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=95.27 E-value=0.043 Score=58.46 Aligned_cols=23 Identities=26% Similarity=0.609 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.++||+|+|||||+++|+..+
T Consensus 82 ~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 82 TLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp EEEEESSSCHHHHHHHHHHTTSS
T ss_pred EEEEECCCCchHHHHHHHHHcCC
Confidence 58899999999999999999876
No 407
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=95.26 E-value=0.01 Score=59.99 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=21.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.||||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 408
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.25 E-value=0.11 Score=58.35 Aligned_cols=97 Identities=15% Similarity=0.320 Sum_probs=56.1
Q ss_pred CceEEEEeCCCCCcHHHHHHHHHHHhccC-CCceEEeccccccchhch-----hcccCCC--CCCccccccchhHHHH--
Q psy14504 469 PYGSFMFLGPTGVGKTELCKTLSACIFNN-EESIIRIDMSEFIEKHSI-----SRLIGAP--PGYIGYEEGGYLTEIV-- 538 (951)
Q Consensus 469 p~~~~Ll~GppGtGKT~lA~~la~~l~~~-~~~~~~~~~~~~~~~~~~-----~~l~g~~--~~~~g~~~~~~l~~~~-- 538 (951)
+...++|+|++|+||||++-.||..+... +.++..+++..+...... ....|-+ +...+.+....+...+
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r~~a~~ql~~~~~~~~l~v~~~~~~~dp~~i~~~~l~~ 178 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQVGVDFFPSDVGQKPVDIVNAALKE 178 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSSTTHHHHHHHHHHHHTCEECCCCSSSCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCCccHHHHHHhhcccCCeeEEeCCCCCCHHHHHHHHHHH
Confidence 34478899999999999999999998766 778887877654332110 1111110 0011122222222233
Q ss_pred -HhCCCeEEEEccccccC--HHHHHHHHHH
Q psy14504 539 -RRKPYSLILLDEIEKAN--SDVFNILLQI 565 (951)
Q Consensus 539 -~~~~~~vl~iDEid~~~--~~~~~~Ll~~ 565 (951)
+...+.+++||=...++ ....+.|..+
T Consensus 179 ~~~~~~D~VIIDTpG~l~~~~~l~~~L~~~ 208 (433)
T 2xxa_A 179 AKLKFYDVLLVDTAGRLHVDEAMMDEIKQV 208 (433)
T ss_dssp HHHTTCSEEEEECCCCCTTCHHHHHHHHHH
T ss_pred HHhCCCCEEEEECCCcccccHHHHHHHHHH
Confidence 33567899999876654 3445554443
No 409
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.24 E-value=0.0075 Score=61.34 Aligned_cols=33 Identities=18% Similarity=0.420 Sum_probs=26.4
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 509 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 509 (951)
.++|.||||+||||+|+.||+.+ + +..++..++
T Consensus 7 ~I~l~G~~GsGKsT~~~~La~~l---~--~~~i~~d~~ 39 (222)
T 1zak_A 7 KVMISGAPASGKGTQCELIKTKY---Q--LAHISAGDL 39 (222)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH---C--CEECCHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CceecHHHH
Confidence 48999999999999999999988 3 344554443
No 410
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.23 E-value=0.009 Score=60.07 Aligned_cols=24 Identities=25% Similarity=0.188 Sum_probs=22.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..|+|.|+||+||||+++.|++.+
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l 28 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWI 28 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999988
No 411
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=95.22 E-value=0.012 Score=59.81 Aligned_cols=24 Identities=21% Similarity=0.410 Sum_probs=22.1
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..+.|+||||+||||+++.|++.+
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 458899999999999999999988
No 412
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=95.21 E-value=0.013 Score=59.70 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.7
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
+..+.|.||||+||||+++.|++.+
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~l 33 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARAL 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999999998
No 413
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=95.21 E-value=0.011 Score=61.17 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=22.0
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.|.|++|+||||+++.||+.+
T Consensus 50 ~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 50 SMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp CEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 59999999999999999999988
No 414
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=95.20 E-value=0.047 Score=64.44 Aligned_cols=26 Identities=38% Similarity=0.621 Sum_probs=22.5
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
.+.+++.|+|||||||++..+...+.
T Consensus 164 ~~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 164 RRISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp BSEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 35789999999999999998887775
No 415
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.19 E-value=0.015 Score=57.43 Aligned_cols=24 Identities=25% Similarity=0.227 Sum_probs=21.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~ 90 (951)
.|+|.|+||+||||+++.|++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999999874
No 416
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=95.19 E-value=0.015 Score=58.42 Aligned_cols=25 Identities=28% Similarity=0.283 Sum_probs=22.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhcc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFN 496 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~ 496 (951)
.++|.|+||+||||+|+.|++.+..
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5889999999999999999998843
No 417
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.17 E-value=0.028 Score=60.56 Aligned_cols=24 Identities=25% Similarity=0.533 Sum_probs=22.4
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+++|+||||+|||+++++||..+
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHh
Confidence 369999999999999999999988
No 418
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.11 E-value=0.011 Score=58.56 Aligned_cols=23 Identities=26% Similarity=0.368 Sum_probs=21.2
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.|.|+|++||||||+++.+++.+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l 36 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY 36 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 36789999999999999999987
No 419
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=95.11 E-value=0.011 Score=61.32 Aligned_cols=25 Identities=32% Similarity=0.615 Sum_probs=22.9
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
+..+.|+||||+||||+++.|++.+
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999988
No 420
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=95.11 E-value=0.0088 Score=59.85 Aligned_cols=22 Identities=23% Similarity=0.433 Sum_probs=20.5
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.|.|+|++|+||||+++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 478999999999999999998 7
No 421
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.09 E-value=0.024 Score=64.08 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=21.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
-+++.|+||+|||+++..+|.....
T Consensus 199 liiIaG~pG~GKTtlal~ia~~~a~ 223 (444)
T 3bgw_A 199 FVLIAARPSMGKTAFALKQAKNMSD 223 (444)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHHH
T ss_pred EEEEEeCCCCChHHHHHHHHHHHHH
Confidence 3688899999999999999987754
No 422
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.06 E-value=0.058 Score=55.74 Aligned_cols=23 Identities=26% Similarity=0.495 Sum_probs=20.2
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQ 87 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~ 87 (951)
.-+|+|+|.||+|||||+.++..
T Consensus 21 ~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 21 TRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCcHHHHHHHHhC
Confidence 45789999999999999998875
No 423
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.04 E-value=0.011 Score=57.97 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=21.2
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
.-+.|+||+|+|||||++.|+..+
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 357899999999999999999875
No 424
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=95.04 E-value=0.015 Score=61.05 Aligned_cols=56 Identities=14% Similarity=0.219 Sum_probs=39.5
Q ss_pred HHHHHHHHhhccc-CCccceeecccccCCcceEe--hhHHHHHhcCCccEEEcCCChHH
Q psy14504 693 KSLSILLKKIHKK-SPEANFIFLGDLINKGPQSL--DTLRMVYSMRNYAKIVLGNHEIH 748 (951)
Q Consensus 693 ~~l~~~l~~~~~~-~~~~~li~~gd~~~~g~~~~--~~l~~~~~~~~~~~~v~GNHe~~ 748 (951)
..++++++.+.-. +..|.++++||+++.++... .+.+++.+++-.+.+|+||||..
T Consensus 26 ~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~~~~~~~~~~~l~~l~~p~~~v~GNHD~~ 84 (274)
T 3d03_A 26 AANADVVSQLNALRERPDAVVVSGDIVNCGRPEEYQVARQILGSLNYPLYLIPGNHDDK 84 (274)
T ss_dssp HHHHHHHHHHHTCSSCCSEEEEESCCBSSCCHHHHHHHHHHHTTCSSCEEEECCTTSCH
T ss_pred HHHHHHHHHHHhcCCCCCEEEECCCCCCCCCHHHHHHHHHHHHhcCCCEEEECCCCCCH
Confidence 5678888776533 24589999999999887421 34455555543578999999964
No 425
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=95.04 E-value=0.011 Score=59.46 Aligned_cols=26 Identities=23% Similarity=0.207 Sum_probs=23.1
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
+..|+|.|+||+||||+++.|++.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45688999999999999999999874
No 426
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=95.02 E-value=0.012 Score=59.77 Aligned_cols=23 Identities=22% Similarity=0.445 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|.||||+||||+|+.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999999999988
No 427
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=95.00 E-value=0.011 Score=59.52 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=22.8
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
+..|+|.|+||+||||+++.|++.+.
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34578999999999999999999874
No 428
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.00 E-value=0.034 Score=55.42 Aligned_cols=41 Identities=20% Similarity=0.161 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHcCC---CCCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 50 DDEIRRAIQVLQRRS---KNNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 50 ~~~i~~l~~~l~~~~---~~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
++.++.+...+.... +.-+.|.|++|+||||+++.++..+.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 4 RDRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 445666666554322 22367889999999999999999874
No 429
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.00 E-value=0.013 Score=58.83 Aligned_cols=39 Identities=23% Similarity=0.369 Sum_probs=27.7
Q ss_pred HHHHHHHHHHc--CCCCCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 52 EIRRAIQVLQR--RSKNNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 52 ~i~~l~~~l~~--~~~~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
.++.+...+.. ....-+.|.||+|+|||||++.|+..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 44455444433 2233467889999999999999999884
No 430
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=94.99 E-value=0.012 Score=63.05 Aligned_cols=33 Identities=30% Similarity=0.482 Sum_probs=27.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 507 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 507 (951)
.+++.||+|||||+||..||+.+ +..++..|-.
T Consensus 42 lIvI~GPTgsGKTtLa~~LA~~l---~~eiIs~Ds~ 74 (339)
T 3a8t_A 42 LLVLMGATGTGKSRLSIDLAAHF---PLEVINSDKM 74 (339)
T ss_dssp EEEEECSTTSSHHHHHHHHHTTS---CEEEEECCSS
T ss_pred eEEEECCCCCCHHHHHHHHHHHC---CCcEEccccc
Confidence 58899999999999999999988 4456655543
No 431
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.94 E-value=0.017 Score=57.24 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=24.7
Q ss_pred EEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14504 473 FMFLGPTGVGKTELCKTLSACIFNNEESIIR 503 (951)
Q Consensus 473 ~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~ 503 (951)
+.|.|++||||||+++.|++.+...+.+++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 7899999999999999999987444445543
No 432
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=94.92 E-value=0.016 Score=58.20 Aligned_cols=24 Identities=25% Similarity=0.278 Sum_probs=22.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIF 495 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~ 495 (951)
.++|.|+||+||||+|+.|++.+.
T Consensus 12 ~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 12 FIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999874
No 433
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=94.91 E-value=0.021 Score=55.74 Aligned_cols=37 Identities=24% Similarity=0.253 Sum_probs=28.5
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehh
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIA 109 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~ 109 (951)
..+.|+|++|+||||+++.|+..+... +.+++.++..
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~-------g~~~i~~d~~ 42 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCH-------GIPCYTLDGD 42 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhC-------CCcEEEECCh
Confidence 457899999999999999999987431 5566666643
No 434
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=94.87 E-value=0.02 Score=60.41 Aligned_cols=34 Identities=29% Similarity=0.525 Sum_probs=27.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~ 508 (951)
.+++.||+|+|||++|..||+.+ +..++..|...
T Consensus 12 ~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~q 45 (316)
T 3foz_A 12 AIFLMGPTASGKTALAIELRKIL---PVELISVDSAL 45 (316)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS---CEEEEECCTTT
T ss_pred EEEEECCCccCHHHHHHHHHHhC---CCcEEeccccc
Confidence 57899999999999999999987 44566555443
No 435
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=94.87 E-value=0.031 Score=61.32 Aligned_cols=23 Identities=39% Similarity=0.569 Sum_probs=21.3
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
-+++.||+|+|||+|+..||+.+
T Consensus 4 ~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHH
T ss_pred EEEEECcchhhHHHHHHHHHHHC
Confidence 46788999999999999999998
No 436
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=94.85 E-value=0.018 Score=57.47 Aligned_cols=23 Identities=22% Similarity=0.508 Sum_probs=21.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.|.|+||+||||+++.|++.+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 47899999999999999999988
No 437
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.85 E-value=0.013 Score=63.01 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=21.5
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
-|++.||+|+||||+|..||+.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 57889999999999999999988
No 438
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.83 E-value=0.15 Score=58.04 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=29.9
Q ss_pred ceEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc
Q psy14504 470 YGSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 507 (951)
Q Consensus 470 ~~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 507 (951)
...++|+|+||+||||++..||..+...+..+..+++.
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D 138 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICAD 138 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 34789999999999999999998886555666666653
No 439
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=94.82 E-value=0.067 Score=61.69 Aligned_cols=24 Identities=13% Similarity=0.065 Sum_probs=21.3
Q ss_pred cEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 68 PVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 68 iLL~GppGtGKTtla~~la~~l~~ 91 (951)
++|.|+||+|||+++..+|..+..
T Consensus 245 ~li~G~pG~GKT~lal~~a~~~a~ 268 (503)
T 1q57_A 245 IMVTSGSGMVMSTFVRQQALQWGT 268 (503)
T ss_dssp EEEEESSCHHHHHHHHHHHHHHTT
T ss_pred EEEeecCCCCchHHHHHHHHHHHH
Confidence 578899999999999999988754
No 440
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=94.82 E-value=0.014 Score=58.37 Aligned_cols=22 Identities=18% Similarity=0.436 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.++|++|+||||+++.|++ +
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-L 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-T
T ss_pred EEEEECCCCcCHHHHHHHHHH-C
Confidence 488999999999999999998 6
No 441
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.81 E-value=0.014 Score=58.47 Aligned_cols=23 Identities=17% Similarity=0.315 Sum_probs=21.6
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.|.|.|++|+||||+++.||+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 57889999999999999999988
No 442
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.80 E-value=0.044 Score=61.14 Aligned_cols=78 Identities=21% Similarity=0.276 Sum_probs=44.5
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc-cccchhchhcccCCCCCCccccccchhHHHHHhCCCeEEEEc
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS-EFIEKHSISRLIGAPPGYIGYEEGGYLTEIVRRKPYSLILLD 549 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~g~~~~~~l~~~~~~~~~~vl~iD 549 (951)
..++++||+|+||||+.++|+..+......++.+.-+ ++........-++ ..+|......+...++.. +.++++.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~---~~~g~~f~~~lr~~Lrq~-pd~i~vg 243 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVN---PRVDMTFARGLRAILRQD-PDVVMVG 243 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECB---GGGTBCHHHHHHHHGGGC-CSEEEES
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEc---cccCcCHHHHHHHHhccC-CCeEEEc
Confidence 3689999999999999999999886555555554321 2211100000000 012222223344555554 4788999
Q ss_pred ccc
Q psy14504 550 EIE 552 (951)
Q Consensus 550 Eid 552 (951)
|+-
T Consensus 244 EiR 246 (418)
T 1p9r_A 244 EIR 246 (418)
T ss_dssp CCC
T ss_pred CcC
Confidence 975
No 443
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=94.80 E-value=0.016 Score=58.89 Aligned_cols=23 Identities=35% Similarity=0.781 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.|.||+|+||||+++.|++.+
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~ 29 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEAL 29 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999999987
No 444
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.78 E-value=0.013 Score=57.82 Aligned_cols=23 Identities=30% Similarity=0.546 Sum_probs=20.0
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
-++|+||+|+||||+++.++...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 36789999999999999999743
No 445
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.77 E-value=0.075 Score=57.24 Aligned_cols=34 Identities=29% Similarity=0.357 Sum_probs=27.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEe
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 504 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~ 504 (951)
..+.|+||+|+||||+++.||..+-..+..+...
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~ 163 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIA 163 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEE
Confidence 4788999999999999999999885555454433
No 446
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.77 E-value=0.012 Score=58.80 Aligned_cols=25 Identities=24% Similarity=0.185 Sum_probs=22.3
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
+..|+|.|+||+||||+++.|++.+
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999976
No 447
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.76 E-value=0.015 Score=58.52 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
..-++|+||+|+||||+++.|+..+
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHST
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhC
Confidence 3457888999999999999999875
No 448
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=94.76 E-value=0.039 Score=56.89 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=19.4
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQR 88 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~ 88 (951)
.-++++|+||+|||++|..+|..
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 34688999999999999987754
No 449
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.75 E-value=0.02 Score=57.62 Aligned_cols=29 Identities=17% Similarity=0.284 Sum_probs=24.5
Q ss_pred cCCCCCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 62 RRSKNNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 62 ~~~~~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
......++|.|+||+||||+++.|++.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34455688999999999999999999883
No 450
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=94.75 E-value=0.015 Score=57.72 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.7
Q ss_pred cEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 68 PVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 68 iLL~GppGtGKTtla~~la~~l~~ 91 (951)
|.|.|++||||||+++.|++.+..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~ 26 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEK 26 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 678999999999999999998844
No 451
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=94.74 E-value=0.019 Score=58.48 Aligned_cols=33 Identities=21% Similarity=0.423 Sum_probs=26.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEF 509 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~ 509 (951)
.+.+.||||+||||+|+.|++.+ + +..++...+
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~l---g--~~~~d~g~~ 43 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARAL---G--ARYLDTGAM 43 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH---T--CEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh---C--CCcccCCcH
Confidence 68899999999999999999988 3 444555444
No 452
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=94.74 E-value=0.016 Score=57.67 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.9
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
...+.|+||+|+|||||++.++..+
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3568899999999999999999876
No 453
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=94.74 E-value=0.015 Score=58.32 Aligned_cols=23 Identities=35% Similarity=0.608 Sum_probs=21.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++|+||||+||||+++.|++.+
T Consensus 14 ~i~l~G~sGsGKsTl~~~L~~~~ 36 (204)
T 2qor_A 14 PLVVCGPSGVGKGTLIKKVLSEF 36 (204)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 48999999999999999999876
No 454
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.73 E-value=0.037 Score=63.56 Aligned_cols=34 Identities=24% Similarity=0.344 Sum_probs=26.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDM 506 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~ 506 (951)
++++.||+|+||||+.++|+..+.. ....++++.
T Consensus 262 ~i~I~GptGSGKTTlL~aL~~~i~~-~~giitied 295 (511)
T 2oap_1 262 SAIVVGETASGKTTTLNAIMMFIPP-DAKVVSIED 295 (511)
T ss_dssp CEEEEESTTSSHHHHHHHHGGGSCT-TCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCC-CCCEEEEcC
Confidence 5999999999999999999987743 345555543
No 455
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=94.73 E-value=0.17 Score=51.29 Aligned_cols=18 Identities=22% Similarity=0.361 Sum_probs=15.8
Q ss_pred CCcEEEcCCCCcHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVE 83 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~ 83 (951)
.++++.+|+|+|||..+.
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 689999999999998654
No 456
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.70 E-value=0.011 Score=59.17 Aligned_cols=22 Identities=32% Similarity=0.367 Sum_probs=19.8
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
.+.|+||+|+||||+++.++. +
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-l 25 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-L 25 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-T
T ss_pred EEEEECCCCCCHHHHHHHHHH-C
Confidence 467999999999999999987 5
No 457
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=94.69 E-value=0.019 Score=56.18 Aligned_cols=23 Identities=30% Similarity=0.556 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.|+||+|+||||+++.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 58899999999999999999875
No 458
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=94.68 E-value=0.024 Score=57.03 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=24.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCce
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESI 501 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~ 501 (951)
.++|.|+||+||||+|+.|++.+...+..+
T Consensus 11 ~I~l~G~~GsGKsT~~~~L~~~l~~~~~~v 40 (215)
T 1nn5_A 11 LIVLEGVDRAGKSTQSRKLVEALCAAGHRA 40 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 588999999999999999999874333343
No 459
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.67 E-value=0.019 Score=63.33 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=23.8
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 63 RSKNNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 63 ~~~~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
.....++++||+|+||||++++++..+.
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 3445688999999999999999999774
No 460
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.66 E-value=0.05 Score=66.62 Aligned_cols=113 Identities=17% Similarity=0.139 Sum_probs=54.4
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHH--c--CCCCCCcCCC----eEE-EEehhhhhcCccccccHHHHHHHHHHHHHhcCC
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRII--N--GEVPNSLLSK----KIL-LLDIALLLAGTKYRGEFEDRLKKILKEISNNQK 137 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~--~--~~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~ 137 (951)
-++|+||.|+||||+.+.++.... . ..+|...... .++ .+...+.. ......+...+..+..-+.....
T Consensus 675 i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~vpa~~~~i~~~d~i~~~ig~~d~l--~~~~stfs~em~~~~~il~~a~~ 752 (918)
T 3thx_B 675 VMIITGPNMGGKSSYIKQVALITIMAQIGSYVPAEEATIGIVDGIFTRMGAADNI--YKGRSTFMEELTDTAEIIRKATS 752 (918)
T ss_dssp EEEEESCCCHHHHHHHHHHHHHHHHHHHTCCBSSSEEEEECCSEEEEEC------------CCHHHHHHHHHHHHHHCCT
T ss_pred EEEEECCCCCchHHHHHHHHHHHHHhhcCccccchhhhhhHHHHHHHhCChHHHH--HHhHHHhhHHHHHHHHHHHhccC
Confidence 468899999999999999875432 1 1222111000 111 11111111 11122333334444444443567
Q ss_pred CeEEEEecccccccCCCCCCchhHHhhhhhhc-cCCcEEEEEeecchH
Q psy14504 138 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL-SRGELHCIGATTLNE 184 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l-e~~~i~vI~at~~~~ 184 (951)
|.+|++||.-.=+. ......+...+...+ +.....+|.+|...+
T Consensus 753 p~LlLLDEP~~GlD---~~~~~~i~~~il~~L~~~~g~tvl~vTH~~e 797 (918)
T 3thx_B 753 QSLVILDELGRGTS---THDGIAIAYATLEYFIRDVKSLTLFVTHYPP 797 (918)
T ss_dssp TCEEEEESTTTTSC---HHHHHHHHHHHHHHHHHTTCCEEEEECSCGG
T ss_pred CCEEEEeCCCCCCC---HHHHHHHHHHHHHHHHHhcCCeEEEEeCcHH
Confidence 88999999864221 111122332333333 444567777888766
No 461
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.66 E-value=0.03 Score=60.51 Aligned_cols=37 Identities=32% Similarity=0.466 Sum_probs=29.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccC------CCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNN------EESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~------~~~~~~~~~~~ 508 (951)
.++++||||+|||++|..++...... +...++++...
T Consensus 109 i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 109 MTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred EEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 58999999999999999998775322 45677777655
No 462
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=94.65 E-value=0.023 Score=57.14 Aligned_cols=36 Identities=19% Similarity=0.314 Sum_probs=28.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc-cCCCceEEeccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIF-NNEESIIRIDMS 507 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~-~~~~~~~~~~~~ 507 (951)
.++|.|+||+||||+++.|++.+. ..+.+++.++..
T Consensus 27 ~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 27 TIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 588999999999999999999884 334456666643
No 463
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.62 E-value=0.039 Score=54.99 Aligned_cols=98 Identities=19% Similarity=0.163 Sum_probs=50.4
Q ss_pred EEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhh-cCc----cccccH-----HHHHHHHHHHHHhcCCC
Q psy14504 69 VLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLL-AGT----KYRGEF-----EDRLKKILKEISNNQKD 138 (951)
Q Consensus 69 LL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~-~~~----~~~g~~-----~~~l~~~~~~a~~~~~~ 138 (951)
+++||.|+||||.+..++...... +..++.+...--. .+. +..|.. ......++..+. ...
T Consensus 32 vitG~MgsGKTT~lL~~a~r~~~~-------g~kVli~k~~~d~R~ge~~i~s~~g~~~~a~~~~~~~~~~~~~~--~~~ 102 (214)
T 2j9r_A 32 VICGSMFSGKSEELIRRVRRTQFA-------KQHAIVFKPCIDNRYSEEDVVSHNGLKVKAVPVSASKDIFKHIT--EEM 102 (214)
T ss_dssp EEECSTTSCHHHHHHHHHHHHHHT-------TCCEEEEECC-----------------CCEEECSSGGGGGGGCC--SSC
T ss_pred EEECCCCCcHHHHHHHHHHHHHHC-------CCEEEEEEeccCCcchHHHHHhhcCCeeEEeecCCHHHHHHHHh--cCC
Confidence 478999999999998888877543 3344433321000 000 000000 000012222221 113
Q ss_pred eEEEEecccccccCCCCCCchhHHhhhhhhccCCcEEEEEeecchH
Q psy14504 139 IIIFIDELHTMIGTGKVEGSIDAGNMLKPELSRGELHCIGATTLNE 184 (951)
Q Consensus 139 ~iL~iDEid~l~~~~~~~~~~~~~~~L~~~le~~~i~vI~at~~~~ 184 (951)
-+|+|||+.-+.+ +....+..+... .+.||.++-..+
T Consensus 103 dvViIDEaQF~~~--------~~V~~l~~l~~~-~~~Vi~~Gl~~D 139 (214)
T 2j9r_A 103 DVIAIDEVQFFDG--------DIVEVVQVLANR-GYRVIVAGLDQD 139 (214)
T ss_dssp CEEEECCGGGSCT--------THHHHHHHHHHT-TCEEEEEECSBC
T ss_pred CEEEEECcccCCH--------HHHHHHHHHhhC-CCEEEEEecccc
Confidence 4999999998733 333445444444 677888877554
No 464
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.60 E-value=0.04 Score=59.50 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.3
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
-++|+||||+|||++|..+|...
T Consensus 100 i~~i~G~~gsGKT~la~~la~~~ 122 (322)
T 2i1q_A 100 VTEFAGVFGSGKTQIMHQSCVNL 122 (322)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999999999763
No 465
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=94.59 E-value=0.021 Score=56.44 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=26.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEecccccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFI 510 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~ 510 (951)
.+.++|++||||||+|+.|++.+ + +..+|+..+.
T Consensus 14 iIgltG~~GSGKSTva~~L~~~l---g--~~vid~D~~~ 47 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKY---G--AHVVNVDRIG 47 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH---C--CEEEEHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc---C--CEEEECcHHH
Confidence 47799999999999999999987 3 4445555543
No 466
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=94.56 E-value=0.069 Score=56.89 Aligned_cols=25 Identities=28% Similarity=0.452 Sum_probs=22.0
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHHc
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRIIN 91 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~~ 91 (951)
-++++||+|+||||++..+|..+..
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHh
Confidence 3678999999999999999998854
No 467
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=94.52 E-value=0.018 Score=57.65 Aligned_cols=21 Identities=24% Similarity=0.377 Sum_probs=19.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHH
Q psy14504 472 SFMFLGPTGVGKTELCKTLSA 492 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~ 492 (951)
.+.|.||+|+||||+++.|+.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~ 24 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD 24 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999987
No 468
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.52 E-value=0.018 Score=57.58 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=21.8
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
..-+.|+||+|+||||+++.|+..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 3457899999999999999999865
No 469
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=94.51 E-value=0.19 Score=64.99 Aligned_cols=47 Identities=17% Similarity=0.210 Sum_probs=36.6
Q ss_pred ccCCChHHHHHHHHHHHHhhhcCCCCCCCCceEEEEeCCCCCcHHHHHHHHHHH
Q psy14504 440 KRVVGQDEAISAVSNAIRRSRSGLSDAKRPYGSFMFLGPTGVGKTELCKTLSAC 493 (951)
Q Consensus 440 ~~v~Gq~~~~~~l~~~~~~~~~~~~~~~~p~~~~Ll~GppGtGKT~lA~~la~~ 493 (951)
..++|.+..++.|...+.... .....+.++|+.|+|||+||+.+++.
T Consensus 124 ~~~vgR~~~~~~l~~~l~~~~-------~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 124 VIFVTRKKLVHAIQQKLWKLN-------GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SSCCCCHHHHHHHHHHHHTTT-------TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred ceeccHHHHHHHHHHHHhhcc-------CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 458899999999999886322 11235889999999999999988754
No 470
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=94.51 E-value=0.02 Score=57.56 Aligned_cols=23 Identities=26% Similarity=0.420 Sum_probs=21.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.|+||+|+||||+++.|+..+
T Consensus 10 ~i~l~GpsGsGKsTl~~~L~~~~ 32 (208)
T 3tau_A 10 LIVLSGPSGVGKGTVREAVFKDP 32 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHST
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 58899999999999999999876
No 471
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.49 E-value=0.018 Score=57.55 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=21.1
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
.-+.|+||+|+||||+++.|+..+
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhC
Confidence 346789999999999999999865
No 472
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=94.48 E-value=0.018 Score=56.70 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.9
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
-+.|+||+|+||||+++.|+..+
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 46789999999999999999876
No 473
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.46 E-value=0.063 Score=57.16 Aligned_cols=33 Identities=24% Similarity=0.340 Sum_probs=26.3
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEE
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIR 503 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~ 503 (951)
..+.|+||+|+||||+++.||..+...+..+..
T Consensus 101 ~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l 133 (302)
T 3b9q_A 101 AVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLM 133 (302)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 468899999999999999999988544444433
No 474
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=94.43 E-value=0.035 Score=55.70 Aligned_cols=24 Identities=29% Similarity=0.473 Sum_probs=22.2
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIF 495 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~ 495 (951)
.+.+.||+|+||||++++|+..+.
T Consensus 24 ~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 24 LVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp EEEEECCTTSCTHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHh
Confidence 678999999999999999999884
No 475
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=94.42 E-value=0.02 Score=56.37 Aligned_cols=23 Identities=43% Similarity=0.902 Sum_probs=20.5
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.|.||+|+||||+++.|+...
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~ 26 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQL 26 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHhccc
Confidence 47899999999999999999744
No 476
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.42 E-value=0.051 Score=59.18 Aligned_cols=37 Identities=30% Similarity=0.242 Sum_probs=28.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhcc------CCCceEEecccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFN------NEESIIRIDMSE 508 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~------~~~~~~~~~~~~ 508 (951)
.++++||||+|||++|..++..... .+...++++...
T Consensus 124 i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 124 ITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp EEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 5789999999999999999886422 345677777655
No 477
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=94.42 E-value=0.022 Score=56.41 Aligned_cols=29 Identities=34% Similarity=0.567 Sum_probs=0.0
Q ss_pred HHcCCCCCcEEEcCCCCcHHHHHHHHHHH
Q psy14504 60 LQRRSKNNPVLIGEPGVGKTAIVEGLAQR 88 (951)
Q Consensus 60 l~~~~~~~iLL~GppGtGKTtla~~la~~ 88 (951)
+......-++|+||+|+|||||++.|++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~ 42 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQ 42 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhh
No 478
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=94.42 E-value=0.026 Score=58.61 Aligned_cols=24 Identities=25% Similarity=0.418 Sum_probs=22.0
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..+.|.||+|+||||+++.||+.+
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~L 51 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESL 51 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999988
No 479
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.40 E-value=0.025 Score=62.09 Aligned_cols=96 Identities=16% Similarity=0.195 Sum_probs=52.8
Q ss_pred CCCCCcEEEcCCCCcHHHHHHHHHHHHHcCCCCCCcCCCeEEEEehhhhhcCccccccHHHHHHHHHHHHHhcCCCeEEE
Q psy14504 63 RSKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPNSLLSKKILLLDIALLLAGTKYRGEFEDRLKKILKEISNNQKDIIIF 142 (951)
Q Consensus 63 ~~~~~iLL~GppGtGKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~~~iL~ 142 (951)
+....++|+||||+||||++++++..+ +..++.+.... ..+. ..+.. .....+++
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~----------~g~~~~~~~~~--------~~~~----~~lg~---~~q~~~~l 221 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELC----------GGKALNVNLPL--------DRLN----FELGV---AIDQFLVV 221 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHH----------CCEEECCSSCT--------TTHH----HHHGG---GTTCSCEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhc----------CCcEEEEeccc--------hhHH----HHHHH---hcchhHHH
Confidence 444578899999999999999999876 44444322110 0011 11111 12345789
Q ss_pred Eeccccccc-CCCC-C-CchhHHhhhhhhccCCcEEEEEeecchH
Q psy14504 143 IDELHTMIG-TGKV-E-GSIDAGNMLKPELSRGELHCIGATTLNE 184 (951)
Q Consensus 143 iDEid~l~~-~~~~-~-~~~~~~~~L~~~le~~~i~vI~at~~~~ 184 (951)
+||++.+.. .+.. . ........+...+. |.+.++.+||+++
T Consensus 222 ~dd~~~~~~~~r~l~~~~~~~~~~~l~~~ld-G~v~v~~~tn~~~ 265 (377)
T 1svm_A 222 FEDVKGTGGESRDLPSGQGINNLDNLRDYLD-GSVKVNLEKKHLN 265 (377)
T ss_dssp ETTCCCSTTTTTTCCCCSHHHHHHTTHHHHH-CSSCEEECCSSSC
T ss_pred HHHHHHHHHHHhhccccCcchHHHHHHHHhc-CCCeEeeccCchh
Confidence 999998765 1111 1 11111133444443 3355677777665
No 480
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=94.39 E-value=0.075 Score=60.33 Aligned_cols=35 Identities=14% Similarity=0.290 Sum_probs=27.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhcc-CCCceEEecc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFN-NEESIIRIDM 506 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~-~~~~~~~~~~ 506 (951)
.+++.|+||+|||+++..++..+.. .+.++..+++
T Consensus 205 liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 205 LIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 5889999999999999999987743 3445655543
No 481
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=94.38 E-value=0.084 Score=56.05 Aligned_cols=97 Identities=15% Similarity=0.225 Sum_probs=53.2
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccccccchhc-----hhcccCCCC--CCccccccchhHHHH---Hh
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMSEFIEKHS-----ISRLIGAPP--GYIGYEEGGYLTEIV---RR 540 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~~~~~~~~-----~~~l~g~~~--~~~g~~~~~~l~~~~---~~ 540 (951)
..+.++|++|+||||++..||..+...+..+..+++.-...... .....|-+. ...+..........+ ..
T Consensus 99 ~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~~~~~~~~l~~~~~~~~~~p~~l~~~~l~~~~~ 178 (295)
T 1ls1_A 99 NLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEKVGVPVLEVMDGESPESIRRRVEEKARL 178 (295)
T ss_dssp EEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHHHHHHHHTCCEEECCTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHHHhcccCCeEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 36788999999999999999998865566666666543221100 011111110 000111111112222 23
Q ss_pred CCCeEEEEcccccc--CHHHHHHHHHHhh
Q psy14504 541 KPYSLILLDEIEKA--NSDVFNILLQILD 567 (951)
Q Consensus 541 ~~~~vl~iDEid~~--~~~~~~~Ll~~le 567 (951)
..+.+++||+.-.. .....+.+..+.+
T Consensus 179 ~~~D~viiDtpp~~~~d~~~~~~l~~~~~ 207 (295)
T 1ls1_A 179 EARDLILVDTAGRLQIDEPLMGELARLKE 207 (295)
T ss_dssp HTCCEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCccccHHHHHHHHHHhh
Confidence 46789999998554 3455566655544
No 482
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=94.37 E-value=0.027 Score=58.46 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=22.1
Q ss_pred CCCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 65 KNNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 65 ~~~iLL~GppGtGKTtla~~la~~l 89 (951)
+..|.|.|+||+||||+++.|++.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHh
Confidence 3457899999999999999999987
No 483
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.36 E-value=0.09 Score=64.57 Aligned_cols=114 Identities=18% Similarity=0.154 Sum_probs=53.7
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHHH--c--CCCCCCcCCC----eEE-EEehhhhhcCccccccHHHHHHHHHHHHHhcCC
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRII--N--GEVPNSLLSK----KIL-LLDIALLLAGTKYRGEFEDRLKKILKEISNNQK 137 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l~--~--~~~~~~~~~~----~~~-~~~~~~l~~~~~~~g~~~~~l~~~~~~a~~~~~ 137 (951)
-++|+||.|+||||+.+.+|.... . ..+|...... .++ .+...+.. ......+...+..+..-+.....
T Consensus 664 i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~~~~~d~i~~~ig~~d~l--~~~lStf~~e~~~~a~il~~a~~ 741 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAEVSIVDCILARVGAGDSQ--LKGVSTFMAEMLETASILRSATK 741 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEEEECCSEEEEECC-----------CHHHHHHHHHHHHHHHCCT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHhcCCccccccccchHHHHHHHhcCchhhH--HHhHhhhHHHHHHHHHHHHhccC
Confidence 368899999999999999854321 1 1223110000 111 11111111 11112223333444444433456
Q ss_pred CeEEEEecccccccCCCCCCchhHHhhhhhhc-cCCcEEEEEeecchHH
Q psy14504 138 DIIIFIDELHTMIGTGKVEGSIDAGNMLKPEL-SRGELHCIGATTLNEY 185 (951)
Q Consensus 138 ~~iL~iDEid~l~~~~~~~~~~~~~~~L~~~l-e~~~i~vI~at~~~~~ 185 (951)
|.+|++||.-.=+. ......+...+...+ +.....+|.+|...+.
T Consensus 742 ~sLlLLDEp~~GlD---~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el 787 (934)
T 3thx_A 742 DSLIIIDELGRGTS---TYDGFGLAWAISEYIATKIGAFCMFATHFHEL 787 (934)
T ss_dssp TCEEEEESCSCSSC---HHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG
T ss_pred CcEEEEeCCCCCCC---HHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH
Confidence 88999999864221 111122323333444 3345677778887663
No 484
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.36 E-value=0.044 Score=58.46 Aligned_cols=34 Identities=24% Similarity=0.298 Sum_probs=27.0
Q ss_pred eEEEEeCCCCCcHHHHHHHHHHHhccCCCceEEe
Q psy14504 471 GSFMFLGPTGVGKTELCKTLSACIFNNEESIIRI 504 (951)
Q Consensus 471 ~~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~ 504 (951)
..+.|+||+|+||||+++.||..+-..+..+...
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~ 136 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFC 136 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3688999999999999999999885555454433
No 485
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=94.34 E-value=0.04 Score=60.51 Aligned_cols=23 Identities=35% Similarity=0.556 Sum_probs=21.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.++++||||+||||++++|+..+
T Consensus 171 ~i~l~G~~GsGKSTl~~~l~~~~ 193 (377)
T 1svm_A 171 YWLFKGPIDSGKTTLAAALLELC 193 (377)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 58999999999999999999876
No 486
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.33 E-value=0.024 Score=59.96 Aligned_cols=33 Identities=30% Similarity=0.411 Sum_probs=26.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS 507 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~ 507 (951)
.+++.||+|+|||++|..||+.+ +..++..|..
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~---~~~iis~Ds~ 37 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRL---NGEVISGDSM 37 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTT---TEEEEECCGG
T ss_pred EEEEECCCcCCHHHHHHHHHHhC---ccceeecCcc
Confidence 47899999999999999999987 3355555443
No 487
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=94.31 E-value=0.023 Score=58.76 Aligned_cols=23 Identities=30% Similarity=0.726 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.|.||||+||||+++.|++.+
T Consensus 29 ~i~l~G~~GsGKSTl~k~La~~l 51 (246)
T 2bbw_A 29 RAVILGPPGSGKGTVCQRIAQNF 51 (246)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999887
No 488
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.31 E-value=0.045 Score=61.32 Aligned_cols=25 Identities=36% Similarity=0.581 Sum_probs=21.9
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRII 90 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l~ 90 (951)
..++|+||||+|||||+..++....
T Consensus 152 q~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 152 GKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp CEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCccHHHHHHHhhhh
Confidence 4689999999999999999988754
No 489
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=94.28 E-value=0.29 Score=48.56 Aligned_cols=24 Identities=25% Similarity=0.356 Sum_probs=18.2
Q ss_pred CCcEEEcCCCCcHHHHHHH-HHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEG-LAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~-la~~l 89 (951)
.++++.+|+|+|||..+-. +...+
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~l 63 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAERL 63 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CCEEEECCCCChHHHHHHHHHHHHH
Confidence 6899999999999987443 34443
No 490
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=94.27 E-value=0.023 Score=56.84 Aligned_cols=23 Identities=30% Similarity=0.457 Sum_probs=21.3
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.|+||+|+||||+++.|+..+
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 58899999999999999999876
No 491
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=94.25 E-value=0.026 Score=56.34 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=21.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.|.||+|+||||+++.|+..+
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 57899999999999999999875
No 492
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=94.25 E-value=0.028 Score=56.13 Aligned_cols=23 Identities=22% Similarity=0.505 Sum_probs=21.7
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.+.|++|+||||+|+.||+.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 58899999999999999999988
No 493
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.24 E-value=0.08 Score=50.00 Aligned_cols=23 Identities=30% Similarity=0.726 Sum_probs=20.3
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQR 88 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~ 88 (951)
..++++|++|+|||||+..++..
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999864
No 494
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.23 E-value=0.12 Score=62.61 Aligned_cols=23 Identities=17% Similarity=0.114 Sum_probs=20.3
Q ss_pred CcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 67 NPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 67 ~iLL~GppGtGKTtla~~la~~l 89 (951)
-++|+||.|+||||+.+.++...
T Consensus 609 i~~ItGpNGsGKSTlLr~iagl~ 631 (800)
T 1wb9_A 609 MLIITGPNMGGKSTYMRQTALIA 631 (800)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCChHHHHHHHHHHH
Confidence 46889999999999999999764
No 495
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=94.23 E-value=0.12 Score=57.47 Aligned_cols=88 Identities=17% Similarity=0.166 Sum_probs=48.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEeccc-cccchhchhcccCCCCCCccc--cccchhHHHHHh-C-----C
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRIDMS-EFIEKHSISRLIGAPPGYIGY--EEGGYLTEIVRR-K-----P 542 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~~~-~~~~~~~~~~l~g~~~~~~g~--~~~~~l~~~~~~-~-----~ 542 (951)
..++.|+||||||++...++.. . ....+... +.. ....+-+... +.... ....-+..++-. . +
T Consensus 163 v~~I~G~aGsGKTt~I~~~~~~----~-~~lVlTpT~~aa--~~l~~kl~~~-~~~~~~~~~V~T~dsfL~~~~~~~~~~ 234 (446)
T 3vkw_A 163 VVLVDGVPGCGKTKEILSRVNF----E-EDLILVPGRQAA--EMIRRRANAS-GIIVATKDNVRTVDSFLMNYGKGARCQ 234 (446)
T ss_dssp EEEEEECTTSCHHHHHHHHCCT----T-TCEEEESCHHHH--HHHHHHHTTT-SCCCCCTTTEEEHHHHHHTTTSSCCCC
T ss_pred EEEEEcCCCCCHHHHHHHHhcc----C-CeEEEeCCHHHH--HHHHHHhhhc-CccccccceEEEeHHhhcCCCCCCCCc
Confidence 5789999999999999876532 1 22222221 111 1111111110 00000 011222333322 2 1
Q ss_pred CeEEEEccccccCHHHHHHHHHHhh
Q psy14504 543 YSLILLDEIEKANSDVFNILLQILD 567 (951)
Q Consensus 543 ~~vl~iDEid~~~~~~~~~Ll~~le 567 (951)
..+|+|||+..+++.....++..+.
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~~ 259 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMSL 259 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHTT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhCC
Confidence 5899999999999999998887764
No 496
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.17 E-value=0.039 Score=52.58 Aligned_cols=23 Identities=30% Similarity=0.416 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+.|.||.|+||||+.++|+..+
T Consensus 35 ~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 35 MVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 58899999999999999999988
No 497
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=94.16 E-value=0.022 Score=57.68 Aligned_cols=23 Identities=26% Similarity=0.449 Sum_probs=20.6
Q ss_pred CCcEEEcCCCCcHHHHHHHHHHHH
Q psy14504 66 NNPVLIGEPGVGKTAIVEGLAQRI 89 (951)
Q Consensus 66 ~~iLL~GppGtGKTtla~~la~~l 89 (951)
..|.|.|++|+||||+++.|++ +
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-l 27 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-L 27 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-T
T ss_pred eEEEEECCCCCCHHHHHHHHHH-c
Confidence 3578999999999999999997 6
No 498
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.15 E-value=0.028 Score=60.44 Aligned_cols=23 Identities=35% Similarity=0.551 Sum_probs=21.8
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHh
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACI 494 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l 494 (951)
.+++.||+|+|||++|+.||+.+
T Consensus 9 lI~I~GptgSGKTtla~~La~~l 31 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKF 31 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred eEEEECCCcCcHHHHHHHHHHHc
Confidence 58899999999999999999988
No 499
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=94.15 E-value=0.029 Score=55.81 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=20.6
Q ss_pred EEEEeCCCCCcHHHHHHHHHHH
Q psy14504 472 SFMFLGPTGVGKTELCKTLSAC 493 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~ 493 (951)
.+.+.|++|+||||+|+.|++.
T Consensus 10 ~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 10 IIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 6889999999999999999985
No 500
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=94.14 E-value=0.62 Score=59.03 Aligned_cols=34 Identities=21% Similarity=0.308 Sum_probs=23.1
Q ss_pred EEEEeCCCCCcHHHHHHHHHHHhccCCCceEEec
Q psy14504 472 SFMFLGPTGVGKTELCKTLSACIFNNEESIIRID 505 (951)
Q Consensus 472 ~~Ll~GppGtGKT~lA~~la~~l~~~~~~~~~~~ 505 (951)
.++++||+|+|||.+|-..+-.....+..++.+-
T Consensus 626 d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlv 659 (1151)
T 2eyq_A 626 DRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLV 659 (1151)
T ss_dssp EEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEEC
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEe
Confidence 6899999999999988655544333344444443
Done!