BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14505
(1619 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P37411|GYRA_SALTY DNA gyrase subunit A OS=Salmonella typhimurium (strain LT2 /
SGSC1412 / ATCC 700720) GN=gyrA PE=3 SV=3
Length = 878
Score = 973 bits (2516), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 468/876 (53%), Positives = 646/876 (73%), Gaps = 13/876 (1%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M+ A+E+ + +EEE+ SYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AM+ + N WN
Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+ + K ARVVG+ +GKYHPHGD ++YD +VRMAQ FSLR LVDGQGNFGSIDGDSAAAM
Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE RL KI++EL+ DL+KET+DF+ NYDG EK P V+PT+IPNLL+NGSSGIAVGMAT
Sbjct: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNLTEVI+G L + N + SI L++ IP PDFPTA II G + + Y TG+G+V
Sbjct: 181 NIPPHNLTEVINGCLAYIDNEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
IRA+ +E + R II+ E+PYQVNK L+EKI++LVK+K++E IS LRDESDK G
Sbjct: 241 YIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRVEGISALRDESDKDG 300
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MRIVIE+KR+ + E+VLN LY QTQLQ +FG+NM+AL +GQPK++NLK+I+ F+ HR+E
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIISAFVRHRRE 360
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
V+ RRTIFELRKAR+ AHILE L IAL NID I++IR TP EAK +I W+L +V
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAIALANIDPIIELIRRAPTPAEAKAALISRPWDLGNV 420
Query: 421 SKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYE 480
+ ++ + + +++ Y L++ QAQ IL + LQ+LT +E +K++++Y+
Sbjct: 421 AAMLERAGDDAARPEWLEPEFGVRDGQYY-LTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479
Query: 481 NVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIA 540
+++++ +L IL ++ R++E+I +E+ +I++++G RR+EI N+ + + EDLI+
Sbjct: 480 ELLEQIAELLHILGSADRLMEVIREEMELIRDQFGDE----RRTEITANSADINIEDLIS 535
Query: 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSN 600
+D+V+TLS+ GY+K QP+++Y AQ+RGG+GK A K+ED+I++L +ANTHD ILCFS+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLTDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595
Query: 601 YGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTS 660
GRLYW+KV+Q+P+ SR +RG+PI+N+ L+ E+IT ILP+ R++ + VFM+T+
Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEANERITAILPV----REYEEGVNVFMATA 651
Query: 661 LGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720
G VKKT L+ FS PR +GIIAVNL++ D LIG LT GS ++MLFS +GK VRF E++V
Sbjct: 652 SGTVKKTALTEFSRPRSAGIIAVNLNDGDELIGVDLTSGSDEVMLFSAAGKVVRFKEDAV 711
Query: 721 RAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG 780
RAMGR+A GV G++L KV++L++ + ++LT T+NGYGKRT EY +R T+G
Sbjct: 712 RAMGRTATGVRGIKLAGDDKVVSLIIPRGEG-AILTVTQNGYGKRTAADEYPTKSRATQG 770
Query: 781 IISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENK 840
+ISIK +RNG VV A V+ +IM+IT G L+RTRVSEI +GR+TQGVILI
Sbjct: 771 VISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRTRVSEISVVGRNTQGVILIRTAED 830
Query: 841 SKLCGVQRLCKITMIKKYIPVITIDGPTASGKGTVA 876
+ G+QR+ + ++ + IDG A G +A
Sbjct: 831 ENVVGLQRVAEPVDDEE---LDAIDGSVAEGDEDIA 863
>sp|P41513|GYRA_ERWCA DNA gyrase subunit A OS=Erwinia carotovora GN=gyrA PE=3 SV=1
Length = 878
Score = 954 bits (2466), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 458/866 (52%), Positives = 633/866 (73%), Gaps = 11/866 (1%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M+ A+E+ + +EEE+ SYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AM + N WN
Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMSVLGNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+P+ K ARVVG+ +GKYHPHGD ++Y+ +VRMAQ FSLR LVDGQGNFGSIDGDSAAAM
Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDSAVYETIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE R++KI++ELL DL+KET+DF+ NYDG E+ P V+PTRIPNLL+NGSSGIAVGMAT
Sbjct: 121 RYTEIRMSKIAHELLADLEKETVDFVPNYDGTEQIPDVMPTRIPNLLVNGSSGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNLTEV++G L + + S+ L++ I PDFPTA II G + + Y TG+G++
Sbjct: 181 NIPPHNLTEVVNGCLAYIDDENISLEGLMEHIKGPDFPTAAIINGRRGIEEAYRTGRGKI 240
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
IRA+ +E + R II+ E+PYQVNK L+EKI++LVK+K++E IS LRDESDK G
Sbjct: 241 YIRARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKDKRIEGISALRDESDKDG 300
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MRIVIE+KR+ + E+VLN LY QTQLQ +FG+NM+AL GQPK++ LK+IL F+ HR+E
Sbjct: 301 MRIVIEIKRDAVGEVVLNNLYSQTQLQTSFGINMVALHQGQPKIMPLKDILVAFVRHRRE 360
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
V+ RRTIFELRKAR+ AHILEGL IAL NID I++IR ++P EAK +I W L V
Sbjct: 361 VVTRRTIFELRKARDRAHILEGLAIALANIDPIIELIRRAASPAEAKASLIAQAWELGSV 420
Query: 421 SKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYE 480
+ ++ + + +++ Y L++ QAQ IL + LQ+LT ME +K++++Y+
Sbjct: 421 ATMLERAGDDAARPEWLEPEFGIRDGRYY-LTEQQAQAILDLRLQKLTGMEHEKLLDEYK 479
Query: 481 NVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIA 540
++ ++ +L IL++ +R++E+I +EL K +Y RR+EI N + + EDLI
Sbjct: 480 ELLAEIAELLYILNSPERLMEVIREELEAFKTQYSDE----RRTEITANTADINIEDLIN 535
Query: 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSN 600
+D+V+TLS+ GY+K QP+S+Y AQ+RGG+GK A K+ED+I++L +ANTHD ILCFS+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSDYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDTILCFSS 595
Query: 601 YGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTS 660
GRLYW+KV+Q+P+ SR +RG+PI+N+ L+ E+IT ILP+ R++ + ++FM+T+
Sbjct: 596 RGRLYWMKVYQLPEASRGARGRPIVNLLPLEADERITAILPV----REYEEGRHIFMATA 651
Query: 661 LGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720
G VKKT L+ FS SGIIAVNL+ D LIG LTDGS + MLFS GK VRF+E +V
Sbjct: 652 SGTVKKTALTEFSR-HVSGIIAVNLNEGDELIGVDLTDGSDEAMLFSAEGKVVRFSEQAV 710
Query: 721 RAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG 780
R+MGR+A GV G+ L+ + +V++L++ + +LT T+NG+GKRT + EY +R TKG
Sbjct: 711 RSMGRTATGVRGINLQGEDRVVSLIIPRGEG-DILTVTQNGFGKRTAVSEYPTKSRATKG 769
Query: 781 IISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENK 840
+ISIK ++RNGKVV A V+ +IM+IT G L+RTRVSE+ +GR+TQGV LI
Sbjct: 770 VISIKVSERNGKVVGAVQVDAADQIMMITDAGTLVRTRVSEVSIVGRNTQGVTLIRTAED 829
Query: 841 SKLCGVQRLCKITMIKKYIPVITIDG 866
+ G+QR+ + ++ V+ ++G
Sbjct: 830 EHVVGLQRVAEPVEDEELDGVVKVEG 855
>sp|P0AES5|GYRA_SHIFL DNA gyrase subunit A OS=Shigella flexneri GN=gyrA PE=1 SV=1
Length = 875
Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/884 (52%), Positives = 640/884 (72%), Gaps = 23/884 (2%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M+ A+E+ + +EEE+ SYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AM+ + N WN
Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+ + K ARVVG+ +GKYHPHGD ++YD +VRMAQ FSLR LVDGQGNFGSIDGDSAAAM
Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE RL KI++EL+ DL+KET+DF+ NYDG EK P V+PT+IPNLL+NGSSGIAVGMAT
Sbjct: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNLTEVI+G L + + + SI L++ IP PDFPTA II G + + Y TG+G+V
Sbjct: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
IRA+ +E + R II+ E+PYQVNK L+EKI++LVKEK++E IS LRDESDK G
Sbjct: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MRIVIE+KR+ + E+VLN LY QTQLQ +FG+NM+AL +GQPK++NLK+I+ F+ HR+E
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
V+ RRTIFELRKAR+ AHILE L +AL NID I++IR TP EAK ++ + W L +V
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420
Query: 421 SKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYE 480
+ ++ + + +++ +Y L++ QAQ IL + LQ+LT +E +K++++Y+
Sbjct: 421 AAMLERAGDDAARPEWLEPEFGVRDG-LYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479
Query: 481 NVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIA 540
++ ++ +L IL ++ R++E+I +EL +++ ++G RR+EI N+ + + EDLI
Sbjct: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDK----RRTEITANSADINLEDLIT 535
Query: 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSN 600
+D+V+TLS+ GY+K QP+SEY AQ+RGG+GK A K+ED+I++L +ANTHD+ILCFS+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595
Query: 601 YGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTS 660
GR+Y +KV+Q+P+ +R +RG+PI+N+ L+ E+IT ILP++ +F + VFM+T+
Sbjct: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT----EFEEGVKVFMATA 651
Query: 661 LGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720
G VKKT+L+ F+ R +G +A+ L + D LIG LT G ++MLFS GK VRF E+SV
Sbjct: 652 NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSV 711
Query: 721 RAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG 780
RAMG + GV G+RL + KV++L+V ++LTAT+NGYGKRT + EY +R TKG
Sbjct: 712 RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG-AILTATQNGYGKRTAVAEYPTKSRATKG 770
Query: 781 IISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENK 840
+ISIK +RNG VV A V+ +IM+IT G L+RTRVSEI +GR+TQGVILI
Sbjct: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830
Query: 841 SKLCGVQRLCKITMIKKYIPV-----ITIDGPTASGKGTVAQLV 879
+ G+QR+ + PV TIDG A G +A V
Sbjct: 831 ENVVGLQRVAE--------PVDEEDLDTIDGSAAEGDDEIAPEV 866
>sp|P0AES4|GYRA_ECOLI DNA gyrase subunit A OS=Escherichia coli (strain K12) GN=gyrA PE=1
SV=1
Length = 875
Score = 952 bits (2461), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 465/884 (52%), Positives = 640/884 (72%), Gaps = 23/884 (2%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M+ A+E+ + +EEE+ SYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AM+ + N WN
Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+ + K ARVVG+ +GKYHPHGD ++YD +VRMAQ FSLR LVDGQGNFGSIDGDSAAAM
Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDSAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE RL KI++EL+ DL+KET+DF+ NYDG EK P V+PT+IPNLL+NGSSGIAVGMAT
Sbjct: 121 RYTEIRLAKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSSGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNLTEVI+G L + + + SI L++ IP PDFPTA II G + + Y TG+G+V
Sbjct: 181 NIPPHNLTEVINGCLAYIDDEDISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
IRA+ +E + R II+ E+PYQVNK L+EKI++LVKEK++E IS LRDESDK G
Sbjct: 241 YIRARAEVEVDAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MRIVIE+KR+ + E+VLN LY QTQLQ +FG+NM+AL +GQPK++NLK+I+ F+ HR+E
Sbjct: 301 MRIVIEVKRDAVGEVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKDIIAAFVRHRRE 360
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
V+ RRTIFELRKAR+ AHILE L +AL NID I++IR TP EAK ++ + W L +V
Sbjct: 361 VVTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNV 420
Query: 421 SKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYE 480
+ ++ + + +++ +Y L++ QAQ IL + LQ+LT +E +K++++Y+
Sbjct: 421 AAMLERAGDDAARPEWLEPEFGVRDG-LYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYK 479
Query: 481 NVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIA 540
++ ++ +L IL ++ R++E+I +EL +++ ++G RR+EI N+ + + EDLI
Sbjct: 480 ELLDQIAELLRILGSADRLMEVIREELELVREQFGDK----RRTEITANSADINLEDLIT 535
Query: 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSN 600
+D+V+TLS+ GY+K QP+SEY AQ+RGG+GK A K+ED+I++L +ANTHD+ILCFS+
Sbjct: 536 QEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSS 595
Query: 601 YGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTS 660
GR+Y +KV+Q+P+ +R +RG+PI+N+ L+ E+IT ILP++ +F + VFM+T+
Sbjct: 596 RGRVYSMKVYQLPEATRGARGRPIVNLLPLEQDERITAILPVT----EFEEGVKVFMATA 651
Query: 661 LGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720
G VKKT+L+ F+ R +G +A+ L + D LIG LT G ++MLFS GK VRF E+SV
Sbjct: 652 NGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSGEDEVMLFSAEGKVVRFKESSV 711
Query: 721 RAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG 780
RAMG + GV G+RL + KV++L+V ++LTAT+NGYGKRT + EY +R TKG
Sbjct: 712 RAMGCNTTGVRGIRLGEGDKVVSLIVPRGDG-AILTATQNGYGKRTAVAEYPTKSRATKG 770
Query: 781 IISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENK 840
+ISIK +RNG VV A V+ +IM+IT G L+RTRVSEI +GR+TQGVILI
Sbjct: 771 VISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAED 830
Query: 841 SKLCGVQRLCKITMIKKYIPV-----ITIDGPTASGKGTVAQLV 879
+ G+QR+ + PV TIDG A G +A V
Sbjct: 831 ENVVGLQRVAE--------PVDEEDLDTIDGSAAEGDDEIAPEV 866
>sp|P14829|GYRA_KLEOX DNA gyrase subunit A OS=Klebsiella oxytoca GN=gyrA PE=3 SV=1
Length = 876
Score = 948 bits (2451), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 460/878 (52%), Positives = 637/878 (72%), Gaps = 18/878 (2%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M+ A+E+ + +EEE+ SYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AM+ + N WN
Sbjct: 1 MSDLAREITPVNIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMNVLGNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+ + K ARVVG+ +GKYHPHGD ++YD +VRMAQ FSLR LVDGQGNFGS+DGDSAAAM
Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDSAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE R++KI++EL+ DL+KET+DF+ NYDG EK P V+PT+IPNLL+NGS GIAVGMAT
Sbjct: 121 RYTEIRMSKIAHELMADLEKETVDFVDNYDGTEKIPDVMPTKIPNLLVNGSFGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNLTEVI+G L + + E SI L++ IP PDFPTA II G + + Y TG+G+V
Sbjct: 181 NIPPHNLTEVINGRLAYVEDEEISIEGLMEHIPGPDFPTAAIINGRRGIEEAYRTGRGKV 240
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
I A+ +E + R II+ E+PYQVNK L+EKI++LVKEK++E IS LRDESDK G
Sbjct: 241 YICARAEVEADAKTGRETIIVHEIPYQVNKARLIEKIAELVKEKRVEGISALRDESDKDG 300
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MRIVIE+KR+ + +VLN LY QTQLQ +FG+NM+AL +GQPK++NLKEI+ F+ HR+E
Sbjct: 301 MRIVIEVKRDAVGRVVLNNLYSQTQLQVSFGINMVALHHGQPKIMNLKEIIAAFVRHRRE 360
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
V+ RRTI LRKAR+ A ILE L+IAL NID I++IR TP EAK +I +W+L +V
Sbjct: 361 VVTRRTILALRKARDRADILEALSIALANIDPIIELIRRAPTPAEAKAGLIARSWDLGNV 420
Query: 421 SKII--GFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINK 478
S ++ G + + + Q Y L++ QAQ IL + LQ+LT +E +K++++
Sbjct: 421 SAMLEAGDDAARPEWLEPEFGVRDGQ----YYLTEQQAQAILDLRLQKLTGLEHEKLLDE 476
Query: 479 YENVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDL 538
Y+ +++++ +L IL ++ R++E+I +EL +++ ++G + RR++I N+++ + EDL
Sbjct: 477 YKELLEQIAELLHILGSADRLMEVIREELELVREQFG----DARRTDITANSVDINIEDL 532
Query: 539 IASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCF 598
I +D+V+TLS+ GY+K QP+++Y AQ+RGG+GK A K+ED+I++L +ANTHD ILCF
Sbjct: 533 ITQEDVVVTLSHEGYVKYQPVNDYEAQRRGGKGKSAPRIKEEDFIDRLLVANTHDTILCF 592
Query: 599 SNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMS 658
S+ GRLYW+KV+Q+P+ SR +RG+PI+N+ L+ E+ T ILP+ R++ + VFM+
Sbjct: 593 SSRGRLYWMKVYQVPEASRGARGRPIVNLLPLEANERYTAILPV----REYEEGVNVFMA 648
Query: 659 TSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNEN 718
T+ G VKKT FS PR +GIIAVNL+ D LIG LT G ++MLFS +GK VRF E+
Sbjct: 649 TASGTVKKTPADEFSRPRSAGIIAVNLNEGDELIGVDLTSGQDEVMLFSAAGKVVRFKED 708
Query: 719 SVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGT 778
VRAMGR+A GV G++L + KV++L+V + + +LTATENGY KRT + EY +R T
Sbjct: 709 DVRAMGRTATGVRGIKLAGEDKVVSLIVPRGEGR-ILTATENGYRKRTAVAEYPTKSRAT 767
Query: 779 KGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVE 838
+G+ISIK +RNG VV A V+ +IM+IT G L+R RVSE+ +GR+TQGVILI
Sbjct: 768 QGVISIKVTERNGSVVGAVQVDDCDQIMMITDAGTLVRIRVSEVSIVGRNTQGVILIRTA 827
Query: 839 NKSKLCGVQRLCKITMIKKYIPVITIDGPTASGKGTVA 876
+ +QR+ + ++ + IDG A G +A
Sbjct: 828 EDENVVALQRVAEPVDDEE---LDAIDGSAAEGDEDIA 862
>sp|P48372|GYRA_PSEAE DNA gyrase subunit A OS=Pseudomonas aeruginosa (strain ATCC 15692 /
PAO1 / 1C / PRS 101 / LMG 12228) GN=gyrA PE=3 SV=1
Length = 923
Score = 942 bits (2434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 447/889 (50%), Positives = 632/889 (71%), Gaps = 46/889 (5%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M + AKE++ + +E+E+ +SYLDYAMSVIVGRALPD RDGLKPVHRRVL+AM E+ N WN
Sbjct: 1 MGELAKEILPVNIEDELKQSYLDYAMSVIVGRALPDARDGLKPVHRRVLYAMSELGNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+P+ K ARVVG+ +GKYHPHGD ++YD +VRMAQ FSLR LVDGQGNFGS+DGD+AAAM
Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFGSVDGDNAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE R+ K+++ELL DL+KET+D++ NYDG E+ P+V+PT+IPNLL+NGSSGIAVGMAT
Sbjct: 121 RYTEVRMAKLAHELLADLEKETVDWVPNYDGTEQIPAVMPTKIPNLLVNGSSGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNL EVIDG L ++ NP+ ++++L++ IP PDFPTAGII G + + + Y TG+GR+
Sbjct: 181 NIPPHNLGEVIDGCLALMDNPDLTVDELMQYIPGPDFPTAGIINGRAGIIEAYRTGRGRI 240
Query: 241 IIRAKTHIEEFNR-ENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKS 299
IRA+ +EE + R III ELPYQ+NK L+EKI++LVKEKK+E IS LRDESDK
Sbjct: 241 YIRARAVVEEMEKGGGREQIIITELPYQLNKARLIEKIAELVKEKKIEGISELRDESDKD 300
Query: 300 GMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRK 359
GMR+VIEL+R E+ E+VLN LY QTQLQ+ FG+N++ALV+GQP+ LNLK++L F+ HR+
Sbjct: 301 GMRVVIELRRGEVGEVVLNNLYAQTQLQSVFGINVVALVDGQPRTLNLKDMLEVFVRHRR 360
Query: 360 EVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD 419
EV+ RRT++ELRKARE HILEG +AL+NID I++I+S+ TP EAK ++I + W
Sbjct: 361 EVVTRRTVYELRKARERGHILEGQAVALSNIDPVIELIKSSPTPAEAKERLIATAWESSA 420
Query: 420 VSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKY 479
V ++ + ++ L++ Y LS QAQ IL++ L RLT +E +K++++Y
Sbjct: 421 VEAMVERAGADACRPEDLDPQYGLRDGKYY-LSPEQAQAILELRLHRLTGLEHEKLLSEY 479
Query: 480 ENVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLI 539
+ ++ + +L IL+N R++E+I +EL +K ++G + RR+EI+ + ++ + DLI
Sbjct: 480 QEILNLIGELIRILTNPARLMEVIREELEAVKAEFG----DARRTEIVASQVDLTIADLI 535
Query: 540 ASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFS 599
+D V+T+S+ GY KSQP++ Y+AQ+RGG+GK A KDED+I L +AN+H +L FS
Sbjct: 536 TEEDRVVTISHGGYAKSQPLAAYQAQRRGGKGKSATGMKDEDYIEHLLVANSHATLLLFS 595
Query: 600 NYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPL------SNNKRD----- 648
+ G++YWL+ ++IP+ SR +RG+P++N+ L E+IT +L + N D
Sbjct: 596 SKGKVYWLRTFEIPEASRTARGRPLVNLLPLDEGERITAMLQIDLEALQQNGGADDDLDE 655
Query: 649 ----------------------------FPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGI 680
P Y+FM+T+ G VKKT L FS PR SG+
Sbjct: 656 AEGAVLEGEVVEAAEVEEVEGETAELVAEPTGAYIFMATAFGTVKKTPLVQFSRPRSSGL 715
Query: 681 IAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQK 740
IA+ L D LI AA+TDG+ ++MLFS +GK +RF E+ VR MGR+ARGV GMRL K Q+
Sbjct: 716 IALKLEEGDTLIAAAITDGAKEVMLFSSAGKVIRFAESVVRIMGRNARGVRGMRLGKGQQ 775
Query: 741 VIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVN 800
+I++L+ + Q +LTA+E G+GKRT + ++ + RG +G+I++ TN+RNG ++AA V
Sbjct: 776 LISMLIPESGAQ-ILTASERGFGKRTPLSKFPRRGRGGQGVIAMVTNERNGALIAAVQVQ 834
Query: 801 RYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRL 849
EIMLI+ G L+RTRV E+ GR+TQGV LI + + L G++R+
Sbjct: 835 EGEEIMLISDQGTLVRTRVDEVSLSGRNTQGVTLIKLASDEVLVGLERV 883
>sp|P48371|GYRA_NEIGO DNA gyrase subunit A OS=Neisseria gonorrhoeae GN=gyrA PE=3 SV=1
Length = 916
Score = 927 bits (2396), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 467/896 (52%), Positives = 626/896 (69%), Gaps = 56/896 (6%)
Query: 2 NQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNR 61
++FA E + + LE+EM KSYLDYAMSVIVGRALPDVRDGLKPVHRRVL+AMHE+ N WN
Sbjct: 10 HKFALETLPVSLEDEMRKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLYAMHELKNNWNA 69
Query: 62 PFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMR 121
+ K AR+VG+ +GKYHPHGD ++YD +VRMAQ+F++R L+DGQGNFGS+DG +AAAMR
Sbjct: 70 AYKKSARIVGDVIGKYHPHGDSAVYDTIVRMAQNFAMRYVLIDGQGNFGSVDGLAAAAMR 129
Query: 122 YTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181
YTE R+ KIS+E+L D+++ET++F NYDG E EP VLPTR P LL+NGSSGIAVGMATN
Sbjct: 130 YTEIRMAKISHEMLADIEEETVNFGPNYDGSEHEPLVLPTRFPTLLVNGSSGIAVGMATN 189
Query: 182 IPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVI 241
IPPHNLT+ I+ L +L P+ I++LI II APDFPT IYGL V +GY TG+GRV+
Sbjct: 190 IPPHNLTDTINACLRLLDEPKTEIDELIDIIQAPDFPTGATIYGLGGVREGYKTGRGRVV 249
Query: 242 IRAKTHIEEFNREN-RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
+R KTHIE + R I+IDE+PYQVNK L+EKI LV+EK LE IS LRDESDKSG
Sbjct: 250 MRGKTHIEPIGKNGERERIVIDEIPYQVNKAKLVEKIGDLVREKTLEGISELRDESDKSG 309
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MR+VIELKRNE E+VLN+LYK T LQ++FG+NM+ LV+GQP+LLNLK+IL F+ HR+E
Sbjct: 310 MRVVIELKRNENAEVVLNQLYKLTPLQDSFGINMVVLVDGQPRLLNLKQILSEFLRHRRE 369
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
V+ RRT+F L+KAR HI E +AL+NID I++I+ + EAK K++ W V
Sbjct: 370 VVTRRTLFRLKKARHEGHIAERKAVALSNIDEIIKLIKESPNAAEAKEKLLARPWASSLV 429
Query: 421 SKII---GFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIIN 477
+++ G + + + NI + Y LS+IQA IL+M L+ LT ++QK+II
Sbjct: 430 EEMLTRSGLDLEMMRPEGLVANIGLKKQG--YYLSEIQADAILRMSLRNLTGLDQKEIIE 487
Query: 478 KYENVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTED 537
Y+N++ K+ID DILS +RI +II DEL IK YG RRSEI + + ED
Sbjct: 488 SYKNLMGKIIDFVDILSKPERITQIIRDELEEIKTNYGDE----RRSEINPFGGDIADED 543
Query: 538 LIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILC 597
LI ++MV+TL++ GYIK+QP ++Y+AQ+RGGRGK+A TKDED+I LF+ANTHDY++C
Sbjct: 544 LIPQREMVVTLTHGGYIKTQPTTDYQAQRRGGRGKQAAATKDEDFIETLFVANTHDYLMC 603
Query: 598 FSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFM 657
F+N G+ +W+KV+++P+G RNSRG+PI N+ L+ EK++ IL + R+FP++ YVF
Sbjct: 604 FTNLGKCHWIKVYKLPEGGRNSRGRPINNVIQLEEGEKVSAILAV----REFPEDQYVFF 659
Query: 658 STSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNE 717
+T+ G+VKK LS F N R GI A+ L D+L+GAA T G+ DIMLFS+ GKA+RFNE
Sbjct: 660 ATAQGMVKKVQLSAFKNVRAQGIKAIALKEGDYLVGAAQTGGADDIMLFSNLGKAIRFNE 719
Query: 718 --------------------------------------NSVRAMGRSARGVIGMRLEKKQ 739
N VR GR + G+ GMRL
Sbjct: 720 YWEKSGNDEAEDADIETEISDDLEDETADNENTLPSGKNGVRPSGRGSGGLRGMRLPADG 779
Query: 740 KVIALLVSNNQKQ----SVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVA 795
K+++L+ + + VLTAT NGYGKRT I +Y++ N+G +G I+I T +RNG +VA
Sbjct: 780 KIVSLITFAPETEESGLQVLTATANGYGKRTPIADYSRKNKGGQGSIAINTGERNGDLVA 839
Query: 796 ATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCK 851
ATLV ++MLIT+GG+LIRT+V +IR+ GR+ GV LI ++ L ++R+ +
Sbjct: 840 ATLVGETDDLMLITSGGVLIRTKVEQIRETGRAAAGVKLINLDEGETLVSLERVAE 895
>sp|P48369|GYRA_AERSA DNA gyrase subunit A OS=Aeromonas salmonicida GN=gyrA PE=3 SV=1
Length = 922
Score = 914 bits (2362), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 469/927 (50%), Positives = 634/927 (68%), Gaps = 69/927 (7%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M+ A+E+ I +EEE+ SYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAM+E+ N WN
Sbjct: 1 MSDLAREITPINIEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMNELGNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+P+ K ARVVG+ +GKYHPHGD ++YD +VR+AQ FS+R LVDGQGNFGS+DGDSAAAM
Sbjct: 61 KPYKKSARVVGDVIGKYHPHGDSAVYDTIVRLAQDFSMRYMLVDGQGNFGSVDGDSAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE R+ +IS+ELL DLDKET+D++ NYDG E P+V+PT++PNLL+NGSSGIAVGMA
Sbjct: 121 RYTEVRMARISHELLADLDKETVDWVPNYDGTEMIPAVMPTKVPNLLVNGSSGIAVGMAW 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNLTE+++G L ++ N +I++L+ I PDFPT II G + + Y TG+G V
Sbjct: 181 NIPPHNLTEIVNGCLALIENGNLTIDELMTYITGPDFPTGAIINGRAGIVQAYRTGRGSV 240
Query: 241 IIRAKTHIEEFNRENR-TAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKS 299
+RAK +E ++ +R T II+ ELPYQVNK L+EKI++LVKEKK+E IS LRDESDK
Sbjct: 241 YVRAKAEVEVDDKTSRETIIIVHELPYQVNKARLIEKIAELVKEKKVEGISALRDESDKD 300
Query: 300 GMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRK 359
RIVIE+KR E EIVLN LYK TQLQ TFG+NM+AL N QPK++NLK+IL F+LHR+
Sbjct: 301 ACRIVIEIKRGESGEIVLNNLYKHTQLQTTFGINMVALDNNQPKVMNLKDILDAFLLHRR 360
Query: 360 EVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD 419
EV+ RRT+FELRKAR+ AHILEGL +AL NID I++IR + TP +AK K++ W L +
Sbjct: 361 EVVTRRTVFELRKARDRAHILEGLAVALANIDPIIELIRHSDTPADAKAKLVARGWELGN 420
Query: 420 VSKII---GFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKII 476
V+ ++ G + + I + Q Y L++ QAQ IL + L +LT +E KI+
Sbjct: 421 VAAMLEKAGDDAARPEWLEPEFGIREGQ----YFLTEQQAQAILDLRLHKLTGLEHGKIL 476
Query: 477 NKYENVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTE 536
+Y++++ + +L IL++ +R++E+I DEL ++ +YG R EI ++ + E
Sbjct: 477 EEYQSLLDLIAELLFILASPERLMEVIRDELLAVREQYGDE----RPPEISASSAEINIE 532
Query: 537 DLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYIL 596
DLI +D+V+TLS+ GY+K QPI++Y AQ+RGGRGK A K+E+++ +L +ANTHD IL
Sbjct: 533 DLITPEDVVVTLSHQGYVKYQPITDYEAQRRGGRGKSATRIKEENFVERLLVANTHDTIL 592
Query: 597 CFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVF 656
CFS G++YWLKV+Q+P+ SR +RG+PIIN+ L+ E+IT ILP+ +++ + YVF
Sbjct: 593 CFSTRGKVYWLKVYQLPEASRGARGRPIINLLPLEEGERITAILPV----KEYADDKYVF 648
Query: 657 MSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFN 716
+T+ G VKKT LS FS P SGI A+NL D LIG +TDGS +IMLFSD+GK VRFN
Sbjct: 649 FATADGTVKKTSLSAFSRPLSSGIRAINLKEGDELIGVDITDGSNEIMLFSDAGKVVRFN 708
Query: 717 ENS------------------------------------------------VRAMGRSAR 728
E S VR MGR+A
Sbjct: 709 EGSAAPMQPMLMSSDDVDGDDESVIDAGNDDDGSDNGEGSESTESKGTFKGVRPMGRTAG 768
Query: 729 GVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNK 788
GV G+RL KV++L+V + ++LTATENGYGK T + EY +RGT+G+ SIK ++
Sbjct: 769 GVRGIRLLNGDKVVSLIVPRGEG-AILTATENGYGKGTALTEYPTKSRGTQGVRSIKVDE 827
Query: 789 RNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQR 848
+GK V+ V+ +IMLIT GG L+RTRVSE+ +GR+T GV LI + G+QR
Sbjct: 828 -DGK-VSIDQVDDTDQIMLITNGGTLVRTRVSEVSIIGRNTGGVRLIRTGEDETVVGLQR 885
Query: 849 LCKITMIKKYIPVITIDGPTASGKGTV 875
+ + ++ V+ IDG + G T
Sbjct: 886 IAE--SYEEENDVMAIDGEVSEGTDTA 910
>sp|P43700|GYRA_HAEIN DNA gyrase subunit A OS=Haemophilus influenzae (strain ATCC 51907 /
DSM 11121 / KW20 / Rd) GN=gyrA PE=3 SV=1
Length = 880
Score = 904 bits (2335), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/871 (52%), Positives = 609/871 (69%), Gaps = 52/871 (5%)
Query: 13 LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE 72
+EEE+ SYLDYAMSVIVGRALPDVRDGLKPVHRRVLF+M N N+ +VK ARVVG+
Sbjct: 14 IEEELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFSMDREGNTANKKYVKSARVVGD 73
Query: 73 TMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISN 132
+GKYHPHGD ++YD +VRMAQ FSLR LVDGQGNFGSIDGD+ AAMRYTE R+ KI+
Sbjct: 74 VIGKYHPHGDSAVYDTIVRMAQPFSLRYMLVDGQGNFGSIDGDAPAAMRYTEVRMQKITQ 133
Query: 133 ELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVID 192
LL DLDKET++F NYDG+ P VLPTRIP LL NGSSGIAVGMATNIPPHNL EV++
Sbjct: 134 ALLTDLDKETVNFSPNYDGELMIPDVLPTRIPALLANGSSGIAVGMATNIPPHNLNEVLN 193
Query: 193 GVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFN 252
G L + E +I++L++ IP PDFPTA +I G + + Y TG+G+V +RA+ +E N
Sbjct: 194 GCLAYIDKNEITIDELMQHIPGPDFPTAALINGRKGIEEAYRTGRGKVYVRARATVET-N 252
Query: 253 RENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEI 312
+ R II+ ELPYQVNK L+EKI++L++EKK+E ISN+ D S+K G+RI I++KR+ +
Sbjct: 253 EKGREQIIVSELPYQVNKAKLVEKIAELIREKKIEGISNITDLSNKEGIRIEIDIKRDAV 312
Query: 313 PEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRK 372
E+VLN LY TQ+Q TFG+NM+AL +GQP+L NLKEI+ F+LHR+EV+ RR+IFELRK
Sbjct: 313 GEVVLNHLYSLTQMQVTFGINMVALDHGQPRLFNLKEIIEAFVLHRREVVTRRSIFELRK 372
Query: 373 AREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYN 432
ARE HILEGL +A +NID I IIR++ +EA I +W L S II N
Sbjct: 373 ARERTHILEGLAVARSNIDEMIAIIRNSKNREEAATSISSRSWTLH--SDII-------N 423
Query: 433 TISKINNISKLQNN-----DMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVI 487
+ +L+ N + Y LS Q IL++ L RLT + +++I +YE ++ K+
Sbjct: 424 LLDASARPDELEENLGIQGEQYYLSPAQVNAILELRLHRLTGIAFEEVIKEYEELLVKIA 483
Query: 488 DLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVIT 547
DL ILS+++R++E+I +EL +K ++G R +EI + + EDLIA +D+V+T
Sbjct: 484 DLLHILSSAERLMEVIREELEEVKAQFGDD----RLTEITAASGDIDLEDLIAQEDVVVT 539
Query: 548 LSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWL 607
LS+ GY+K QP+++Y AQ+RGG+GK A K+ED+I +L +ANTHD ILCFS+ GRLYWL
Sbjct: 540 LSHEGYVKYQPLTDYEAQRRGGKGKSATKMKEEDFIEKLLVANTHDTILCFSSRGRLYWL 599
Query: 608 KVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKT 667
KV+Q+PQ SR +RG+PI+N+ L+ E+IT ILP+S + ++ +V M+T+ GIVKK
Sbjct: 600 KVYQLPQASRGARGRPIVNILPLQENERITAILPVSA----YEEDKFVVMATAGGIVKKI 655
Query: 668 LLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSA 727
L+ FS PR +GIIA+NL +ED LIG +TDGS +IMLFS G+ VRF EN+VRAMGR A
Sbjct: 656 ALTEFSRPRSNGIIALNLRDEDELIGVDITDGSNEIMLFSSQGRVVRFAENAVRAMGRLA 715
Query: 728 RGVIGMRLEKK----------------------------QKVIALLVSNNQKQSVLTATE 759
GV G++L KV++L+V + ++LTAT+
Sbjct: 716 TGVRGIKLALTNDISDDESAVEIEDISDDNAEASLDLNIDKVVSLVVPKGEG-AILTATQ 774
Query: 760 NGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRV 819
NGYGKRT + EY +R TKG+ISIK ++RNGKVVAAT V +IMLIT G L+RTRV
Sbjct: 775 NGYGKRTQLSEYPTKSRNTKGVISIKVSERNGKVVAATQVEETDQIMLITDAGTLVRTRV 834
Query: 820 SEIRKMGRSTQGVILITVENKSKLCGVQRLC 850
SE+ +GR+TQGV LI + + ++R+C
Sbjct: 835 SEVSIVGRNTQGVRLIRTADDEHVVSLERVC 865
>sp|Q8K9W2|GYRA_BUCAP DNA gyrase subunit A OS=Buchnera aphidicola subsp. Schizaphis
graminum (strain Sg) GN=gyrA PE=3 SV=1
Length = 825
Score = 892 bits (2305), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/851 (52%), Positives = 616/851 (72%), Gaps = 28/851 (3%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M A+E++ + +E+E+ SYLDYAMSVIVGRALPDVRDGLKPVHRR+LFAMH ++N WN
Sbjct: 1 MKHLAREIVQVDIEKELKSSYLDYAMSVIVGRALPDVRDGLKPVHRRILFAMHVLSNYWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+ + K ARVVG+ +GKYHPHGD ++YD++VRMAQ+FSLR L+DGQGNFGSIDGD+AAAM
Sbjct: 61 KAYKKSARVVGDVIGKYHPHGDSAVYDSIVRMAQNFSLRYMLIDGQGNFGSIDGDAAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE R++KIS ELL DL+K T++FI NYDG E P +LP++IPNLLINGSSGIAVGMAT
Sbjct: 121 RYTEVRMSKISQELLADLEKNTVEFIPNYDGTEHIPEILPSKIPNLLINGSSGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNL EVIDG L + + ++ +LI+ IP PDFPTAGII G + + Y TGKG++
Sbjct: 181 NIPPHNLNEVIDGCLAYIKDDNITLRELIQHIPGPDFPTAGIINGKKGIEEAYRTGKGKI 240
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
IRA+ IE+ + + +II E+PYQVNK L+EKI++LVKEK+++ I+ LRDESDK G
Sbjct: 241 YIRARNKIEKNKKNKKESIIFYEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDG 300
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MRIV+E+K+ + EI+LN+LY TQLQ +FG+NM+AL GQPK L+LKEIL +F+ HR+E
Sbjct: 301 MRIVVEIKKEAMSEIILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKHFLSHREE 360
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
++ RR+IFEL K + +HILEGL+IAL NI+ I +I+ + EAK II+ TW +
Sbjct: 361 IVTRRSIFELDKTCKRSHILEGLSIALININCIIDLIKKAKSSLEAKELIIKKTWIYKNS 420
Query: 421 SKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYE 480
KI N+K+++ Y ++ Q Q IL + L +LT++E+ K++ +Y+
Sbjct: 421 EKI---NQKDHD----------------YHFTEEQVQAILDLRLHKLTSLEKNKLVLEYD 461
Query: 481 NVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIA 540
+ KK+ +L IL + R+ E+I DEL IKN +G RR+EI N + S EDLI
Sbjct: 462 CLTKKIKELKKILKSRDRMREVIRDELVSIKNNFGDQ----RRTEITENNPDISIEDLIN 517
Query: 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSN 600
+D+V+TLS+ GY+K QP+S+Y AQKRGG+GK A K+ED+I L + NTHD ILCFS+
Sbjct: 518 QEDVVVTLSHSGYVKYQPLSDYNAQKRGGKGKSAAKIKEEDFIESLVVTNTHDTILCFSS 577
Query: 601 YGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTS 660
G LYW+KV+Q+P+ SR+++G+PI+N+ L NKE+IT ILP+ +F N +FM+T+
Sbjct: 578 RGILYWMKVYQLPESSRHAKGRPIVNLLPLSNKERITAILPI----HEFKDNLNIFMATA 633
Query: 661 LGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720
GIVKK+ L F PR +GIIA+NL D LIG +LT+G +IMLF+ +GK V+F ENSV
Sbjct: 634 QGIVKKSSLKEFKKPRIAGIIAINLRANDELIGVSLTNGKNNIMLFTQNGKVVQFLENSV 693
Query: 721 RAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG 780
R MGR+A GV G+++ K KV++L+V +K+S+L AT NGYGKRT I ++ +R T+G
Sbjct: 694 RTMGRTASGVRGIKISKNDKVVSLIVP-YKKESILIATNNGYGKRTKITDFPIKSRATQG 752
Query: 781 IISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENK 840
+ISIK K+NGK++ A V +IM+IT G L+R R SEI + R+TQGVILI
Sbjct: 753 VISIKITKKNGKIIGAIQVVEKDQIMMITNAGTLVRIRASEIGVLKRNTQGVILIRTSKN 812
Query: 841 SKLCGVQRLCK 851
K+ +QR+ +
Sbjct: 813 EKVVALQRIVE 823
>sp|P57277|GYRA_BUCAI DNA gyrase subunit A OS=Buchnera aphidicola subsp. Acyrthosiphon
pisum (strain APS) GN=gyrA PE=3 SV=1
Length = 830
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 456/857 (53%), Positives = 618/857 (72%), Gaps = 30/857 (3%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M ++E+I + +EEE+ SYLDY+MSVIVGRALPDVRDGLKPVHRR+LFAM+ +NN WN
Sbjct: 1 MKDPSREIIQVNIEEELKSSYLDYSMSVIVGRALPDVRDGLKPVHRRILFAMYILNNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+ + K AR+VG+ +GKYHPHGD ++YDA+VRMAQ FSLR L+DGQGNFGS+DGDSAAAM
Sbjct: 61 KAYKKSARIVGDVIGKYHPHGDSAVYDAIVRMAQKFSLRYMLIDGQGNFGSVDGDSAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE R++KI++ELL DL+K T++F+ NYDG E P +LP +IPNLLINGSSGIAVGMAT
Sbjct: 121 RYTEVRMSKIAHELLNDLEKNTVEFLPNYDGTEYIPEILPAKIPNLLINGSSGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNL EVI+G L + N + ++ +LIK IP PDFPTA II G S + + Y TGKG++
Sbjct: 181 NIPPHNLNEVINGCLAYIDNNDITLEELIKHIPGPDFPTAAIINGKSGIEEAYRTGKGKI 240
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
IRA+ IE+ + + +I+ +E+PYQVNK L+EKI++LVKEK+++ I+ LRDESDK G
Sbjct: 241 YIRAQNQIEKNKKNKKESIVFNEIPYQVNKSRLIEKIAELVKEKRIDGITALRDESDKDG 300
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MRIVIE+KR I E++LN+LY TQLQ +FG+NM+AL GQPK L+LKEIL F+ HR+E
Sbjct: 301 MRIVIEIKREAIAEVILNQLYSLTQLQISFGINMVALCQGQPKTLSLKEILKNFLSHRQE 360
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
+I RR++FEL K R HILEGL +AL NI+ I+II+++ +AK II+ W
Sbjct: 361 IIIRRSLFELNKVRNRIHILEGLNMALININAIIEIIKNSVNSIDAKKIIIQKNW----- 415
Query: 421 SKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYE 480
K I+ L Y S+ QAQ IL + L ++TN+EQ+KII ++
Sbjct: 416 ---------------KSEKINYLAKKHEYYFSEKQAQAILDLRLHKITNLEQEKIIMEHN 460
Query: 481 NVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIA 540
++IKK +L +IL N K++ E+I EL I+N + RR++I N + + EDLI
Sbjct: 461 DLIKKTKELKEILENPKKMFEVIKSELLSIQNNFSDK----RRTKITENHSDINMEDLIN 516
Query: 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSN 600
+D+V+TLS+ GY+K QP+S+Y AQ+RGG+GK A K+ED+I L IANTHD ILCFS+
Sbjct: 517 QEDVVVTLSHSGYVKYQPLSDYNAQRRGGKGKSAAKIKEEDFIESLVIANTHDTILCFSS 576
Query: 601 YGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTS 660
G LYW+KV+Q+P+ SR++RG+PI+N+ L KE+IT ILP+ + N +FM+T+
Sbjct: 577 RGILYWMKVYQLPESSRHARGRPIVNLLPLSPKERITAILPV----HKYQDNLNIFMTTA 632
Query: 661 LGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720
GIVKK+ LS F PR +GIIA+NL D LIG ALTDG+ +IMLF+ +GK V+F ENSV
Sbjct: 633 HGIVKKSSLSQFKKPRFAGIIAINLHANDELIGVALTDGNNNIMLFTQNGKVVQFLENSV 692
Query: 721 RAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG 780
R MGR+A GV G++++K KV++L+V N K S+L AT+NGYGKRT I ++ +R T+G
Sbjct: 693 RTMGRTASGVKGIKIKKNDKVVSLIVPKN-KGSILIATKNGYGKRTKISDFPIKSRATQG 751
Query: 781 IISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENK 840
+ISIK K+NGK++ A V +IM+IT G L+R RVSE+ + R+TQGVILI
Sbjct: 752 VISIKITKKNGKIIGAIQVIEKDQIMMITDAGTLVRIRVSEVGVLKRNTQGVILIRTSKN 811
Query: 841 SKLCGVQRLCKITMIKK 857
K+ +Q++ MI+K
Sbjct: 812 EKVVALQKIVD-PMIEK 827
>sp|Q89AS3|GYRA_BUCBP DNA gyrase subunit A OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=gyrA PE=3 SV=1
Length = 847
Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 445/848 (52%), Positives = 610/848 (71%), Gaps = 10/848 (1%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
M + AKE+I I +E+E+ SYLDYAMSVI+GRALPDVRDGLKPVHRR+LFAM +NN WN
Sbjct: 1 MKEVAKEIIKIDIEDELKNSYLDYAMSVIIGRALPDVRDGLKPVHRRILFAMKVLNNDWN 60
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+ + K AR+VG+ +GKYHPHGD ++YDA+VRMAQ FSLR L+DGQGNFGSIDGDSAAAM
Sbjct: 61 KTYKKSARIVGDVIGKYHPHGDTAVYDAIVRMAQPFSLRYVLIDGQGNFGSIDGDSAAAM 120
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE R++KI+ ELL DLDK T+ F SNYDG EK P VLP +IPNLLINGSSGIAVGMAT
Sbjct: 121 RYTEIRMSKIAYELLNDLDKNTVSFFSNYDGTEKIPEVLPAKIPNLLINGSSGIAVGMAT 180
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHN+ EVI+G L + + ++ L++ IP PDFPTAG+I G + Y TGKG++
Sbjct: 181 NIPPHNIKEVINGCLAFIDDQNITLKKLMEHIPGPDFPTAGLINGKRGIEKAYKTGKGKI 240
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
IRAK+ IE + + +III ELPYQVNK +++ I+ LVKEKK+E I+ LRDESDK G
Sbjct: 241 YIRAKSIIEIQKKTKKKSIIIYELPYQVNKARVIKGIANLVKEKKIEGITTLRDESDKEG 300
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
MRIVIE+K+ EI+LN+LY TQL+ +FG+NM+AL++GQPK++ LKEIL FI HR++
Sbjct: 301 MRIVIEIKKETKAEIILNQLYSLTQLEISFGINMVALIHGQPKVMTLKEILNAFINHRRK 360
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
+I RR++FEL K R+ HILEGL I+L NID I +I+ +ST +EAKNK+ W
Sbjct: 361 IIMRRSLFELNKIRKKIHILEGLIISLDNIDLIINLIKKSSTLEEAKNKLKTYHW-YSKH 419
Query: 421 SKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYE 480
++ KKN ++++ + + + + L+ Q Q IL++ LQ+LT++E KK+I++Y+
Sbjct: 420 AQYTQILKKNAHSLTPYDKKLRPIDTQKFFLTPEQIQAILELRLQKLTHLEHKKLISEYK 479
Query: 481 NVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIA 540
+ K +L +IL N+ + +I+ DEL I++ +G RR++I +N + +T DLI
Sbjct: 480 QLFKTSNNLENILKNNNILTKIMKDELIKIRDNFGDK----RRTKINVNYSDINTSDLIN 535
Query: 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSN 600
+++VITLS GY+K Q +S Y AQKRGG+GK A+ TK+ED+I L +ANTHD ILCFS+
Sbjct: 536 KENVVITLSYSGYVKYQLLSSYEAQKRGGKGKLAVKTKEEDFIENLLVANTHDIILCFSS 595
Query: 601 YGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTS 660
G LYW+KV+Q+P+ SR++RG+PI+N+ L + E+IT ILP+S K +FM+TS
Sbjct: 596 KGILYWMKVYQLPEASRHARGRPIVNLLPLSSNERITAILPISEYKDSIN----IFMATS 651
Query: 661 LGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720
G+VKKT L F PR GIIA+NL +D LIG +LT+G+ IMLF+ GKAV F+E V
Sbjct: 652 KGMVKKTSLYEFKKPRTKGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEILV 711
Query: 721 RAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG 780
R GR+A GV G++++K KV++L+V + ++L TE+GYGKRT I E+ +R T+G
Sbjct: 712 RKTGRTAIGVQGIKIKKSDKVVSLVVP-KKHGNILLITEHGYGKRTEIHEFPIKSRATQG 770
Query: 781 IISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENK 840
I++K K+NG V+ V +I++IT G L+RTRV EI +GR+TQGVI+I K
Sbjct: 771 TIAMKITKKNGIVIGTMQVVNQDQIIIITNAGTLVRTRVLEIGILGRNTQGVIIIRTSKK 830
Query: 841 SKLCGVQR 848
K+ +Q+
Sbjct: 831 EKVVALQK 838
Score = 45.4 bits (106), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 47/203 (23%), Positives = 98/203 (48%), Gaps = 21/203 (10%)
Query: 552 GYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQ 611
G +K + E++ + +G A+ K +D + + + N ++ I+ F+ G+
Sbjct: 653 GMVKKTSLYEFKKPRT--KGIIAINLKADDELIGVSLTNGNNTIMLFTAQGKAVHFSEIL 710
Query: 612 IPQGSRNSRGKPIINMFSLKNKEKI-TVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLS 670
+ + R + G + +K +K+ ++++P K+ + + T G K+T +
Sbjct: 711 VRKTGRTAIG---VQGIKIKKSDKVVSLVVP--------KKHGNILLITEHGYGKRTEIH 759
Query: 671 NFSNPRKS----GIIAVNLSNED-FLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGR 725
F P KS G IA+ ++ ++ +IG I++ +++G VR + +GR
Sbjct: 760 EF--PIKSRATQGTIAMKITKKNGIVIGTMQVVNQDQIIIITNAGTLVRTRVLEIGILGR 817
Query: 726 SARGVIGMRLEKKQKVIALLVSN 748
+ +GVI +R KK+KV+AL +N
Sbjct: 818 NTQGVIIIRTSKKEKVVALQKAN 840
>sp|P94605|GYRA_CLOAB DNA gyrase subunit A OS=Clostridium acetobutylicum (strain ATCC 824
/ DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=gyrA
PE=3 SV=2
Length = 830
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 408/845 (48%), Positives = 577/845 (68%), Gaps = 47/845 (5%)
Query: 8 VISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCA 67
V+ + + EM K Y+DYAMSVIV RALPDVRDGLKPVHRR+L++MHE+ + + KCA
Sbjct: 7 VLPVDISSEMKKCYIDYAMSVIVSRALPDVRDGLKPVHRRILYSMHELGLTPEKGYRKCA 66
Query: 68 RVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRL 127
R+VG+ +GKYHPHGD S+Y ALVR+AQ F+LR T+VDG GNFGS+DGDSAAAMRYTE ++
Sbjct: 67 RIVGDVLGKYHPHGDSSVYGALVRLAQDFNLRYTVVDGHGNFGSVDGDSAAAMRYTEAKM 126
Query: 128 NKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNL 187
NKI+ E++ D+ K T+DFI N+DG+EKEP VLP+R PNLL+NGS+GIAVGMATNIPPHNL
Sbjct: 127 NKIALEMVRDIGKNTVDFIPNFDGEEKEPVVLPSRFPNLLVNGSAGIAVGMATNIPPHNL 186
Query: 188 TEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTH 247
EVIDG+ ++ NPE +I +L+ I PDFPTAGII G S + Y TG+G++ +RAK+
Sbjct: 187 GEVIDGITMLIDNPEATILELMAQIKGPDFPTAGIIMGKSGIRAAYETGRGKITVRAKSE 246
Query: 248 IEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIEL 307
I E + III E+PYQVNK L+E I+ LVK+K++ IS+LRDESD+ GMRIVIE+
Sbjct: 247 I-EVEDNGKQKIIITEIPYQVNKARLVESIADLVKDKRIVGISDLRDESDRDGMRIVIEI 305
Query: 308 KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTI 367
K++ I+LN+LYK T+LQ+TFG+NMLALV+ +P++LNLK+IL ++I +++VI+RRT
Sbjct: 306 KKDANSNIILNQLYKHTRLQDTFGINMLALVDNRPEVLNLKQILQHYIKFQEQVIRRRTE 365
Query: 368 FELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFN 427
F+L KA AHILEGL IAL +ID I +IR + T QEAK ++
Sbjct: 366 FDLEKASARAHILEGLKIALDHIDEVISLIRGSKTAQEAKLGLM---------------- 409
Query: 428 KKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVI 487
D + LS+ QAQ IL + LQRLT +E++KI ++Y ++K +
Sbjct: 410 -------------------DKFGLSEKQAQAILDLKLQRLTGLEREKIEDEYNELMKTIA 450
Query: 488 DLTDILSNSKRIIEIITDELNIIKNKYGSHKKN-IRRSEIILNAINPSTEDLIASQDMVI 546
+L IL++ +I+ II DELN IK KYG +K I R+E N I+ EDLI +++VI
Sbjct: 451 ELKSILADENKILAIIRDELNEIKAKYGDERKTAIERAE---NDID--IEDLIQEENVVI 505
Query: 547 TLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYW 606
TL++ GYIK Y +QKRGGRG +AM TK++D++ +FI +TH+ IL F+N GR+Y
Sbjct: 506 TLTHAGYIKRINADTYTSQKRGGRGIQAMTTKEDDFVENIFITSTHNNILFFTNKGRMYK 565
Query: 607 LKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKK 666
LK +QIP+ R ++G ++N+ L EKI ++ + ++F + +++ M T GI+KK
Sbjct: 566 LKAYQIPEAGRAAKGTNVVNLLQLDPNEKIQAVISI----KEFDEESFLVMCTKKGIIKK 621
Query: 667 TLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRS 726
T++ + N RKSG+IA+NL+++D L+ +T G DI++ ++ G A+RFNE VR +GR+
Sbjct: 622 TVVGMYKNIRKSGLIAINLNDDDELVSVRITKGDDDIIIVTNKGLAIRFNEVDVRPLGRN 681
Query: 727 ARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKT 786
A GV G+ L++ V+ + V NQ+ VL +ENG+GKRT + EY +RG KG+I+ K
Sbjct: 682 ALGVKGITLKEDDFVVGMEVP-NQESDVLVVSENGFGKRTHVGEYKCQHRGGKGLITYKV 740
Query: 787 NKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGV 846
+ + GK+V +V E+MLI GI IR VS+I R+ GV L+ K+ +
Sbjct: 741 SDKTGKLVGVRMVEDGDELMLINNLGIAIRINVSDISTTSRNAMGVTLMRNNGDEKVLAL 800
Query: 847 QRLCK 851
++ K
Sbjct: 801 AKINK 805
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/221 (22%), Positives = 96/221 (43%), Gaps = 15/221 (6%)
Query: 542 QDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNY 601
+ ++ + G IK + Y+ ++ G A+ D+D + + I D I+ +N
Sbjct: 607 ESFLVMCTKKGIIKKTVVGMYKNIRKSGL--IAINLNDDDELVSVRITKGDDDIIIVTNK 664
Query: 602 GRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSL 661
G + RN+ G + +LK ++ V + + N + D V + +
Sbjct: 665 GLAIRFNEVDVRPLGRNALG---VKGITLK-EDDFVVGMEVPNQESD------VLVVSEN 714
Query: 662 GIVKKTLLSNFSNPRKSG--IIAVNLSNEDF-LIGAALTDGSYDIMLFSDSGKAVRFNEN 718
G K+T + + + G +I +S++ L+G + + ++ML ++ G A+R N +
Sbjct: 715 GFGKRTHVGEYKCQHRGGKGLITYKVSDKTGKLVGVRMVEDGDELMLINNLGIAIRINVS 774
Query: 719 SVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATE 759
+ R+A GV MR +KV+AL N L +E
Sbjct: 775 DISTTSRNAMGVTLMRNNGDEKVLALAKINKDDSEQLEDSE 815
>sp|O50628|GYRA_BACHD DNA gyrase subunit A OS=Bacillus halodurans (strain ATCC BAA-125 /
DSM 18197 / FERM 7344 / JCM 9153 / C-125) GN=gyrA PE=3
SV=1
Length = 833
Score = 795 bits (2052), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/848 (47%), Positives = 573/848 (67%), Gaps = 48/848 (5%)
Query: 3 QFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRP 62
Q V I + +EM S++DYAMSVIV RALPDVRDG+KPVHRR+L+AM+E+ ++
Sbjct: 4 QDQSRVKEINISQEMKTSFMDYAMSVIVSRALPDVRDGMKPVHRRILYAMNELGMTSDKA 63
Query: 63 FVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRY 122
+ K AR+VGE +GKYHPHGD ++Y+ +VRMAQ FS R LVDG GNFGSIDGD+AAAMRY
Sbjct: 64 YKKSARIVGEVIGKYHPHGDSAVYETMVRMAQDFSYRYMLVDGHGNFGSIDGDAAAAMRY 123
Query: 123 TECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNI 182
TE R++KIS EL+ D++K+TID+ NYDG EKEP V+P+R PNLL+NG+SGIAVGMATNI
Sbjct: 124 TEARMSKISMELVRDINKDTIDYQDNYDGSEKEPVVMPSRFPNLLVNGASGIAVGMATNI 183
Query: 183 PPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVII 242
PPH L EVIDGVL + NP+ S+ +L++ IP PDFPT I G S + Y TG+G + +
Sbjct: 184 PPHQLGEVIDGVLALSKNPDISVPELMEHIPGPDFPTGAEILGRSGIRKAYQTGRGSITL 243
Query: 243 RAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMR 302
RAKT IEE + + R II+ E+PYQVNK L+EKI++LV++KK++ I++LRDESD++GMR
Sbjct: 244 RAKTEIEEHHGKQR--IIVHEIPYQVNKAKLIEKIAELVRDKKIDGITDLRDESDRNGMR 301
Query: 303 IVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVI 362
IVIE++++ ++LN LYKQT LQ +FG+N+LALV GQPK+LNLKE L +++ H+ VI
Sbjct: 302 IVIEVRKDANANVLLNNLYKQTALQTSFGINLLALVEGQPKVLNLKECLEHYLAHQVIVI 361
Query: 363 KRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSK 422
+RRT FELRKA AHILEGL IAL ++D I +IRS+ T + A+N ++E
Sbjct: 362 RRRTAFELRKAEARAHILEGLRIALDHLDEVISLIRSSQTTEIARNGLMER--------- 412
Query: 423 IIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENV 482
++LS QAQ IL M LQRLT +E+ KI +Y+ +
Sbjct: 413 --------------------------FELSYEQAQAILDMRLQRLTGLERDKIEAEYKEL 446
Query: 483 IKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKN-IRRSEIILNAINPSTEDLIAS 541
I+++ +L IL++ +++++II +EL +K KY +K I SE + EDLI
Sbjct: 447 IERIAELKAILADHEKVLDIIREELLELKEKYNDERKTAISASEDMF-----EDEDLIPR 501
Query: 542 QDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNY 601
Q++VITL++ GYIK PIS YR+QKRGGRG + M T ++D++ LF N+H IL F+N
Sbjct: 502 QNVVITLTHHGYIKRLPISTYRSQKRGGRGIQGMGTNEDDFVQHLFTTNSHHTILFFTNK 561
Query: 602 GRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSL 661
G++Y LK ++IP+ R ++G PIIN+ ++ E I+ I+P+ +F +++Y+F T
Sbjct: 562 GKVYRLKGYEIPELGRTAKGIPIINLLQIEQDEYISTIIPIE----EFTEDHYLFFMTKD 617
Query: 662 GIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVR 721
GI K+T LS+F+N R+ G+ A+NL D L G LT+G ++++ + G A+RF+E VR
Sbjct: 618 GIAKRTQLSSFANIRRGGLFAINLREGDELHGVRLTNGDKEVIVGTRQGMAIRFHETDVR 677
Query: 722 AMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGI 781
MGR+A GV G+ L V+ + + + Q VL TE G+GKRT I +Y RG KGI
Sbjct: 678 LMGRTATGVKGISLTGDDHVVGMDIVED-GQDVLIVTEKGFGKRTPIADYRIQTRGGKGI 736
Query: 782 ISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKS 841
+ ++NG +V+ +V+ H++M+IT GI+IR V +I GR TQGV LI V
Sbjct: 737 KTCNITEKNGPLVSLKVVSVDHDLMIITASGIIIRLHVKDISVTGRITQGVTLIRVAEGE 796
Query: 842 KLCGVQRL 849
++ V R+
Sbjct: 797 EVATVARV 804
>sp|P05653|GYRA_BACSU DNA gyrase subunit A OS=Bacillus subtilis (strain 168) GN=gyrA PE=3
SV=1
Length = 821
Score = 788 bits (2034), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 395/845 (46%), Positives = 571/845 (67%), Gaps = 46/845 (5%)
Query: 3 QFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRP 62
Q +V I + +EM S+LDYAMSVIV RALPDVRDGLKPVHRR+L+AM+++ ++P
Sbjct: 4 QNTPQVREINISQEMRTSFLDYAMSVIVSRALPDVRDGLKPVHRRILYAMNDLGMTSDKP 63
Query: 63 FVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRY 122
+ K AR+VGE +GKYHPHGD ++Y+++VRMAQ F+ R LVDG GNFGS+DGDSAAAMRY
Sbjct: 64 YKKSARIVGEVIGKYHPHGDSAVYESMVRMAQDFNYRYMLVDGHGNFGSVDGDSAAAMRY 123
Query: 123 TECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNI 182
TE R++KIS E+L D+ K+TID+ NYDG E+EP V+P+R PNLL+NG++GIAVGMATNI
Sbjct: 124 TEARMSKISMEILRDITKDTIDYQDNYDGSEREPVVMPSRFPNLLVNGAAGIAVGMATNI 183
Query: 183 PPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVII 242
PPH L E+IDGVL V NP+ +I +L+++IP PDFPTAG I G S + Y +G+G + I
Sbjct: 184 PPHQLGEIIDGVLAVSENPDITIPELMEVIPGPDFPTAGQILGRSGIRKAYESGRGSITI 243
Query: 243 RAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMR 302
RAK IE+ + + II+ ELPYQVNK L+EKI+ LV++KK+E I++LRDESD++GMR
Sbjct: 244 RAKAEIEQTS-SGKERIIVTELPYQVNKAKLIEKIADLVRDKKIEGITDLRDESDRTGMR 302
Query: 303 IVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVI 362
IVIE++R+ ++LN LYKQT LQ +FG+N+LALV+GQPK+L LK+ L +++ H+K VI
Sbjct: 303 IVIEIRRDANANVILNNLYKQTALQTSFGINLLALVDGQPKVLTLKQCLEHYLDHQKVVI 362
Query: 363 KRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSK 422
+RRT +ELRKA AHILEGL +AL ++D I +IR++ T + A+ +IE
Sbjct: 363 RRRTAYELRKAEARAHILEGLRVALDHLDAVISLIRNSQTAEIARTGLIEQ--------- 413
Query: 423 IIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENV 482
+ L++ QAQ IL M LQRLT +E++KI +Y+++
Sbjct: 414 --------------------------FSLTEKQAQAILDMRLQRLTGLEREKIEEEYQSL 447
Query: 483 IKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINP-STEDLIAS 541
+K + +L DIL+N +++EII +EL IK ++ RR+EI+ + + EDLI
Sbjct: 448 VKLIAELKDILANEYKVLEIIREELTEIKERFNDE----RRTEIVTSGLETIEDEDLIER 503
Query: 542 QDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNY 601
+++V+TL++ GY+K P S YR+QKRGG+G + M T ++D++ L +THD IL FSN
Sbjct: 504 ENIVVTLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSNK 563
Query: 602 GRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSL 661
G++Y K ++IP+ R ++G PIIN+ ++ E I I+P++ +F Y+F +T
Sbjct: 564 GKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVT----EFNAELYLFFTTKH 619
Query: 662 GIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVR 721
G+ K+T LS F+N R +G+IA++L +D L+G LTDG+ I++ + +G +RF E VR
Sbjct: 620 GVSKRTSLSQFANIRNNGLIALSLREDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVR 679
Query: 722 AMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGI 781
MGR+A GV G+ L V+ + + + VL TE GYGKRT +EY +RG KG+
Sbjct: 680 EMGRTAAGVKGITLTDDDVVVGMEILEEESH-VLIVTEKGYGKRTPAEEYRTQSRGGKGL 738
Query: 782 ISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKS 841
+ K + NG++VA ++M+IT G+LIR +++I GR TQGV LI + +
Sbjct: 739 KTAKITENNGQLVAVKATKGEEDLMIITASGVLIRMDINDISITGRVTQGVRLIRMAEEE 798
Query: 842 KLCGV 846
+ V
Sbjct: 799 HVATV 803
Score = 59.7 bits (143), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 51/206 (24%), Positives = 104/206 (50%), Gaps = 10/206 (4%)
Query: 651 KNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNL-SNEDFLIGAALTDGSYD-IMLFSD 708
+ N V T G VK+ S + + ++ G + +NED + ++ ++D I+ FS+
Sbjct: 503 RENIVVTLTHNGYVKRLPASTYRSQKRGGKGVQGMGTNEDDFVEHLISTSTHDTILFFSN 562
Query: 709 SGKAVRFNENSVRAMGRSARGVIGMRLEKKQK-----VIALLVSNNQKQSVLTATENGYG 763
GK R + GR+A+G+ + L + +K I + N + + T++G
Sbjct: 563 KGKVYRAKGYEIPEYGRTAKGIPIINLLEVEKGEWINAIIPVTEFNAELYLFFTTKHGVS 622
Query: 764 KRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIR 823
KRT + ++ N G+I++ + + +++ L + +I++ T G+LIR +++R
Sbjct: 623 KRTSLSQFA--NIRNNGLIALSL-REDDELMGVRLTDGTKQIIIGTKNGLLIRFPETDVR 679
Query: 824 KMGRSTQGVILITVENKSKLCGVQRL 849
+MGR+ GV IT+ + + G++ L
Sbjct: 680 EMGRTAAGVKGITLTDDDVVVGMEIL 705
>sp|P0C0R0|GYRA_STAES DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC
12228) GN=gyrA PE=3 SV=1
Length = 893
Score = 783 bits (2023), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 393/823 (47%), Positives = 570/823 (69%), Gaps = 46/823 (5%)
Query: 16 EMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMG 75
EM +S+LDYAMSVIV RALPDVRDGLKPVHRR+L+ ++E ++P+ K AR+VG+ MG
Sbjct: 17 EMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMG 76
Query: 76 KYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELL 135
KYHPHGD SIY+A+VRMAQ FS R LVDGQGNFGS+DGD AAAMRYTE R+ KI+ ELL
Sbjct: 77 KYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELL 136
Query: 136 IDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVL 195
D++K+TIDFI NYDG E+EPSVLP R PNLL+NG++GIAVGMATNIPPHNLTEVIDGVL
Sbjct: 137 RDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVL 196
Query: 196 YVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNREN 255
+ NP+ +IN+L++ I PDFPTAG++ G S + Y TG+G + +R++ IEE
Sbjct: 197 SLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAEIEERGG-G 255
Query: 256 RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIPE 314
R I++ E+P+QVNK ++EKI++LV++KK++ I++LRDE+ ++G+R+VI+++++
Sbjct: 256 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANAS 315
Query: 315 IVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR 374
++LN LYKQT LQ +FG+NM+ALVNG+PKL+NLKE L +++ H+K V++RRT + L+KAR
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALIHYLEHQKTVVRRRTEYNLKKAR 375
Query: 375 EYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTI 434
+ AHILEGL IAL +ID I IR + T + A
Sbjct: 376 DRAHILEGLRIALDHIDEIITTIRESDTDKIA---------------------------- 407
Query: 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILS 494
++ LQ + +KL++ QAQ IL M L+RLT +E+ KI ++Y +++ + +L +IL+
Sbjct: 408 -----MASLQ--ERFKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILA 460
Query: 495 NSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLSNLGY 553
+ + +++++ DEL IK ++G RR+EI L + EDLI + +VITLS+ Y
Sbjct: 461 DEEVLLQLVRDELTEIKERFGDE----RRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613
IK P+S YR+Q RGGRG + M T DED+++QL +THD++L F+N GR+Y LK +++P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576
Query: 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS 673
+ SR S+G PIIN L+N E I+ ++ + + + + +Y+ +T GIVK++ LSNFS
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLE---SEEDYLVFATKQGIVKRSSLSNFS 633
Query: 674 NPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGM 733
K+G IA+N +D LI LT G+ DI++ + +RF+E+++R +GR+A GV G+
Sbjct: 634 RINKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGI 693
Query: 734 RLEKKQKVIALLVSNNQKQS-VLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
L + V+ L V++++ + VL TENGYGKRT + EY NRG KGI + +RNG
Sbjct: 694 SLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGN 753
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILI 835
+V T V ++M++T G++IR V +I + GR+ QGV L+
Sbjct: 754 IVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLM 796
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 100/207 (48%), Gaps = 13/207 (6%)
Query: 649 FPKNNYVFMSTSLGIVKKTLLSNFSNPRKSG--IIAVNLSNEDFLIGAALTDGSYD-IML 705
P+ V + +K+ +S + + + G I +N +EDF + +T ++D ++
Sbjct: 502 IPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDF-VSQLVTMSTHDHVLF 560
Query: 706 FSDSGKAVRFNENSVRAMGRSARGVI---GMRLEKKQKV---IALLVSNNQKQSVLTATE 759
F++ G+ + V + R ++G+ + LE + + IA+ +++ ++ AT+
Sbjct: 561 FTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVKDLESEEDYLVFATK 620
Query: 760 NGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRV 819
G KR+ + +++ N+ K I+ K + +++A L +I++ T LIR
Sbjct: 621 QGIVKRSSLSNFSRINKNGKIAINFKEDD---ELIAVRLTTGNEDILIGTAHASLIRFSE 677
Query: 820 SEIRKMGRSTQGVILITVENKSKLCGV 846
S +R +GR+ GV I++ + G+
Sbjct: 678 STLRPLGRTAAGVKGISLREGDTVVGL 704
Score = 37.4 bits (85), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 101/230 (43%), Gaps = 15/230 (6%)
Query: 534 STEDLIASQDMVITLSNLGYIKSQPISEY-RAQKRGGRGKKAMMTKDEDWINQLFIANTH 592
+ +DL + +D ++ + G +K +S + R K G K A+ K++D + + + +
Sbjct: 604 AVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNG---KIAINFKEDDELIAVRLTTGN 660
Query: 593 DYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKN 652
+ IL + + L + R + G + SL+ + + + + D
Sbjct: 661 EDILIGTAHASLIRFSESTLRPLGRTAAG---VKGISLREGDTVVGL-----DVADSESE 712
Query: 653 NYVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDF-LIGAALTDGSYDIMLFSDS 709
+ V + T G K+T +S + SN GI ++ + ++ G D+M+ +++
Sbjct: 713 DEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNA 772
Query: 710 GKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATE 759
G +R + + + GR+A+GV M+L Q V + N + + A E
Sbjct: 773 GVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADE 822
>sp|Q5HK04|GYRA_STAEQ DNA gyrase subunit A OS=Staphylococcus epidermidis (strain ATCC
35984 / RP62A) GN=gyrA PE=3 SV=1
Length = 893
Score = 780 bits (2015), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 392/823 (47%), Positives = 569/823 (69%), Gaps = 46/823 (5%)
Query: 16 EMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMG 75
EM +S+LDYAMSVIV RALPDVRDGLKPVHRR+L+ ++E ++P+ K AR+VG+ MG
Sbjct: 17 EMRESFLDYAMSVIVSRALPDVRDGLKPVHRRILYGLNEQGMTPDKPYKKSARIVGDVMG 76
Query: 76 KYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELL 135
KYHPHGD SIY+A+VRMAQ FS R LVDGQGNFGS+DGD AAAMRYTE R+ KI+ ELL
Sbjct: 77 KYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELL 136
Query: 136 IDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVL 195
D++K+TIDFI NYDG E+EPSVLP R PNLL+NG++GIAVGMATNIPPHNLTEVIDGVL
Sbjct: 137 RDINKDTIDFIDNYDGNEREPSVLPARFPNLLVNGAAGIAVGMATNIPPHNLTEVIDGVL 196
Query: 196 YVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNREN 255
+ NP+ +IN+L++ I PDFPTAG++ G S + Y TG+G + +R++ IEE
Sbjct: 197 SLSKNPDITINELMEDIQGPDFPTAGLVLGKSGIRRAYETGRGSIQMRSRAEIEERGG-G 255
Query: 256 RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIPE 314
R I++ E+P+QVNK ++EKI++LV++KK++ I++LRDE+ ++G+R+VI+++++
Sbjct: 256 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANAS 315
Query: 315 IVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR 374
++LN LYKQT LQ +FG+NM+ALVN +PKL+NLKE L +++ H+K V++RRT + L+KAR
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNSRPKLINLKEALIHYLEHQKTVVRRRTEYNLKKAR 375
Query: 375 EYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTI 434
+ AHILEGL IAL +ID I IR + T + A
Sbjct: 376 DRAHILEGLRIALDHIDEIITTIRESDTDKIA---------------------------- 407
Query: 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILS 494
++ LQ + +KL++ QAQ IL M L+RLT +E+ KI ++Y +++ + +L +IL+
Sbjct: 408 -----MASLQ--ERFKLTERQAQAILDMRLRRLTGLERDKIESEYNELLEYIKELEEILA 460
Query: 495 NSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLSNLGY 553
+ + +++++ DEL IK ++G RR+EI L + EDLI + +VITLS+ Y
Sbjct: 461 DEEVLLQLVRDELTEIKERFGDE----RRTEIQLGGLEDLEDEDLIPEEQIVITLSHNNY 516
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613
IK P+S YR+Q RGGRG + M T DED+++QL +THD++L F+N GR+Y LK +++P
Sbjct: 517 IKRLPVSTYRSQNRGGRGIQGMNTLDEDFVSQLVTMSTHDHVLFFTNKGRVYKLKGYEVP 576
Query: 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS 673
+ SR S+G PIIN L+N E I+ ++ + + + + +Y+ +T GIVK++ LSNFS
Sbjct: 577 ELSRQSKGIPIINAIELENDETISTMIAVKDLE---SEEDYLVFATKQGIVKRSSLSNFS 633
Query: 674 NPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGM 733
K+G IA+N +D LI LT G+ DI++ + +RF+E+++R +GR+A GV G+
Sbjct: 634 RINKNGKIAINFKEDDELIAVRLTTGNEDILIGTAHASLIRFSESTLRPLGRTAAGVKGI 693
Query: 734 RLEKKQKVIALLVSNNQKQS-VLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
L + V+ L V++++ + VL TENGYGKRT + EY NRG KGI + +RNG
Sbjct: 694 SLREGDTVVGLDVADSESEDEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGN 753
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILI 835
+V T V ++M++T G++IR V +I + GR+ QGV L+
Sbjct: 754 IVCITTVTGEEDLMVVTNAGVIIRLDVHDISQNGRAAQGVRLM 796
Score = 49.7 bits (117), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/207 (21%), Positives = 100/207 (48%), Gaps = 13/207 (6%)
Query: 649 FPKNNYVFMSTSLGIVKKTLLSNFSNPRKSG--IIAVNLSNEDFLIGAALTDGSYD-IML 705
P+ V + +K+ +S + + + G I +N +EDF + +T ++D ++
Sbjct: 502 IPEEQIVITLSHNNYIKRLPVSTYRSQNRGGRGIQGMNTLDEDF-VSQLVTMSTHDHVLF 560
Query: 706 FSDSGKAVRFNENSVRAMGRSARGVI---GMRLEKKQKV---IALLVSNNQKQSVLTATE 759
F++ G+ + V + R ++G+ + LE + + IA+ +++ ++ AT+
Sbjct: 561 FTNKGRVYKLKGYEVPELSRQSKGIPIINAIELENDETISTMIAVKDLESEEDYLVFATK 620
Query: 760 NGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRV 819
G KR+ + +++ N+ K I+ K + +++A L +I++ T LIR
Sbjct: 621 QGIVKRSSLSNFSRINKNGKIAINFKEDD---ELIAVRLTTGNEDILIGTAHASLIRFSE 677
Query: 820 SEIRKMGRSTQGVILITVENKSKLCGV 846
S +R +GR+ GV I++ + G+
Sbjct: 678 STLRPLGRTAAGVKGISLREGDTVVGL 704
Score = 37.0 bits (84), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 101/230 (43%), Gaps = 15/230 (6%)
Query: 534 STEDLIASQDMVITLSNLGYIKSQPISEY-RAQKRGGRGKKAMMTKDEDWINQLFIANTH 592
+ +DL + +D ++ + G +K +S + R K G K A+ K++D + + + +
Sbjct: 604 AVKDLESEEDYLVFATKQGIVKRSSLSNFSRINKNG---KIAINFKEDDELIAVRLTTGN 660
Query: 593 DYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKN 652
+ IL + + L + R + G + SL+ + + + + D
Sbjct: 661 EDILIGTAHASLIRFSESTLRPLGRTAAG---VKGISLREGDTVVGL-----DVADSESE 712
Query: 653 NYVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDF-LIGAALTDGSYDIMLFSDS 709
+ V + T G K+T +S + SN GI ++ + ++ G D+M+ +++
Sbjct: 713 DEVLVVTENGYGKRTPVSEYRLSNRGGKGIKTATITERNGNIVCITTVTGEEDLMVVTNA 772
Query: 710 GKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATE 759
G +R + + + GR+A+GV M+L Q V + N + + A E
Sbjct: 773 GVIIRLDVHDISQNGRAAQGVRLMKLGDGQFVSTVAKVNEEDDNEENADE 822
>sp|Q2FKQ0|GYRA_STAA3 DNA gyrase subunit A OS=Staphylococcus aureus (strain USA300)
GN=gyrA PE=3 SV=1
Length = 887
Score = 769 bits (1986), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/823 (47%), Positives = 563/823 (68%), Gaps = 46/823 (5%)
Query: 16 EMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMG 75
EM +S+LDYAMSVIV RALPDVRDGLKPVHRR+L+ ++E ++ + K AR+VG+ MG
Sbjct: 17 EMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMG 76
Query: 76 KYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELL 135
KYHPHGD+SIY+A+VRMAQ FS R LVDGQGNFGS+DGD AAAMRYTE R+ KI+ ELL
Sbjct: 77 KYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELL 136
Query: 136 IDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVL 195
D++K+TIDFI NYDG E+EPSVLP R PNLL NG+SGIAVGMATNIPPHNLTE+I+GVL
Sbjct: 137 RDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVL 196
Query: 196 YVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNREN 255
+ NP+ SI +L++ I PDFPTAG+I G S + Y TG+G + +R++ IEE
Sbjct: 197 SLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERG-GG 255
Query: 256 RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIPE 314
R I++ E+P+QVNK ++EKI++LV++KK++ I++LRDE+ ++G+R+VI+++++
Sbjct: 256 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANAS 315
Query: 315 IVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR 374
++LN LYKQT LQ +FG+NM+ALVNG+PKL+NLKE L +++ H+K V++RRT + LRKA+
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAK 375
Query: 375 EYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTI 434
+ AHILEGL IAL +ID I IR + T + A
Sbjct: 376 DRAHILEGLRIALDHIDEIISTIRESDTDKVA---------------------------- 407
Query: 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILS 494
+ LQ +KLS+ QAQ IL M L+RLT +E+ KI +Y ++ + +L IL+
Sbjct: 408 -----MESLQQR--FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILA 460
Query: 495 NSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAI-NPSTEDLIASQDMVITLSNLGY 553
+ + +++++ DEL I++++G RR+EI L N EDLI + +VITLS+ Y
Sbjct: 461 DEEVLLQLVRDELTEIRDRFGDD----RRTEIQLGGFENLEDEDLIPEEQIVITLSHNNY 516
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613
IK P+S YRAQ RGGRG + M T +ED+++QL +THD++L F+N GR+Y LK +++P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576
Query: 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS 673
+ SR S+G P++N L+N E I+ ++ + + + ++N++ +T G+VK++ LSNFS
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE---SEDNFLVFATKRGVVKRSALSNFS 633
Query: 674 NPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGM 733
++G IA++ +D LI LT G DI++ + +RF E+++R +GR+A GV G+
Sbjct: 634 RINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGI 693
Query: 734 RLEKKQKVIALLVSN-NQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
L + +V+ L V++ N VL TENGYGKRT + +Y NRG KGI + +RNG
Sbjct: 694 TLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGN 753
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILI 835
VV T V ++M++T G++IR V++I + GR+ QGV LI
Sbjct: 754 VVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLI 796
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 649 FPKNNYVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDFLIGAALTDGSYD-IML 705
P+ V + +K+ +S + N G+ +N EDF + +T ++D ++
Sbjct: 502 IPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDF-VSQLVTLSTHDHVLF 560
Query: 706 FSDSGKAVRFNENSVRAMGRSARG---VIGMRLEKKQKVIALLVSNNQKQS----VLTAT 758
F++ G+ + V + R ++G V + LE + VI+ +++ +S ++ AT
Sbjct: 561 FTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDE-VISTMIAVKDLESEDNFLVFAT 619
Query: 759 ENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTR 818
+ G KR+ + +++ NR K IS + + +++A L + +I++ T+ LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGKIAISFREDD---ELIAVRLTSGQEDILIGTSHASLIRFP 676
Query: 819 VSEIRKMGRSTQGVILITVENKSKLCGV 846
S +R +GR+ GV IT+ ++ G+
Sbjct: 677 ESTLRPLGRTATGVKGITLREGDEVVGL 704
Score = 39.3 bits (90), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 124/285 (43%), Gaps = 24/285 (8%)
Query: 534 STEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHD 593
+ +DL + + ++ + G +K +S + R G K A+ +++D + + + + +
Sbjct: 604 AVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNG--KIAISFREDDELIAVRLTSGQE 661
Query: 594 YILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNN 653
IL +++ L + R + G + +L+ +++ + N D
Sbjct: 662 DILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGLDVAHANSVD----- 713
Query: 654 YVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDF-LIGAALTDGSYDIMLFSDSG 710
V + T G K+T ++++ SN GI ++ + ++ G D+M+ +++G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773
Query: 711 KAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALL--------VSNNQKQSVLTATENG- 761
+R + + GR+A+GV +RL Q V + +N +QS T +E+G
Sbjct: 774 VIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSEDGT 833
Query: 762 -YGKRTLIKEYTKHNRGTKGIISIKTNKRNGKV-VAATLVNRYHE 804
+ ++ + T N +I + N +G++ V ++R E
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEVRQDFMDRVEE 878
>sp|Q5HJZ0|GYRA_STAAC DNA gyrase subunit A OS=Staphylococcus aureus (strain COL) GN=gyrA
PE=3 SV=1
Length = 887
Score = 768 bits (1984), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 390/823 (47%), Positives = 562/823 (68%), Gaps = 46/823 (5%)
Query: 16 EMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMG 75
EM +S+LDYAMSVIV RALPDVRDGLKPVHRR+L+ ++E ++ + K AR+VG+ MG
Sbjct: 17 EMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMG 76
Query: 76 KYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELL 135
KYHPHGD SIY+A+VRMAQ FS R LVDGQGNFGS+DGD AAAMRYTE R+ KI+ ELL
Sbjct: 77 KYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELL 136
Query: 136 IDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVL 195
D++K+TIDFI NYDG E+EPSVLP R PNLL NG+SGIAVGMATNIPPHNLTE+I+GVL
Sbjct: 137 RDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVL 196
Query: 196 YVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNREN 255
+ NP+ SI +L++ I PDFPTAG+I G S + Y TG+G + +R++ IEE
Sbjct: 197 SLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERG-GG 255
Query: 256 RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIPE 314
R I++ E+P+QVNK ++EKI++LV++KK++ I++LRDE+ ++G+R+VI+++++
Sbjct: 256 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANAS 315
Query: 315 IVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR 374
++LN LYKQT LQ +FG+NM+ALVNG+PKL+NLKE L +++ H+K V++RRT + LRKA+
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAK 375
Query: 375 EYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTI 434
+ AHILEGL IAL +ID I IR + T + A
Sbjct: 376 DRAHILEGLRIALDHIDEIISTIRESDTDKVA---------------------------- 407
Query: 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILS 494
+ LQ +KLS+ QAQ IL M L+RLT +E+ KI +Y ++ + +L IL+
Sbjct: 408 -----MESLQQR--FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILA 460
Query: 495 NSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAI-NPSTEDLIASQDMVITLSNLGY 553
+ + +++++ DEL I++++G RR+EI L N EDLI + +VITLS+ Y
Sbjct: 461 DEEVLLQLVRDELTEIRDRFGDD----RRTEIQLGGFENLEDEDLIPEEQIVITLSHNNY 516
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613
IK P+S YRAQ RGGRG + M T +ED+++QL +THD++L F+N GR+Y LK +++P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576
Query: 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS 673
+ SR S+G P++N L+N E I+ ++ + + + ++N++ +T G+VK++ LSNFS
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE---SEDNFLVFATKRGVVKRSALSNFS 633
Query: 674 NPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGM 733
++G IA++ +D LI LT G DI++ + +RF E+++R +GR+A GV G+
Sbjct: 634 RINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGI 693
Query: 734 RLEKKQKVIALLVSN-NQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
L + +V+ L V++ N VL TENGYGKRT + +Y NRG KGI + +RNG
Sbjct: 694 TLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGN 753
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILI 835
VV T V ++M++T G++IR V++I + GR+ QGV LI
Sbjct: 754 VVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLI 796
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 649 FPKNNYVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDFLIGAALTDGSYD-IML 705
P+ V + +K+ +S + N G+ +N EDF + +T ++D ++
Sbjct: 502 IPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDF-VSQLVTLSTHDHVLF 560
Query: 706 FSDSGKAVRFNENSVRAMGRSARG---VIGMRLEKKQKVIALLVSNNQKQS----VLTAT 758
F++ G+ + V + R ++G V + LE + VI+ +++ +S ++ AT
Sbjct: 561 FTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDE-VISTMIAVKDLESEDNFLVFAT 619
Query: 759 ENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTR 818
+ G KR+ + +++ NR K IS + + +++A L + +I++ T+ LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGKIAISFREDD---ELIAVRLTSGQEDILIGTSHASLIRFP 676
Query: 819 VSEIRKMGRSTQGVILITVENKSKLCGV 846
S +R +GR+ GV IT+ ++ G+
Sbjct: 677 ESTLRPLGRTATGVKGITLREGDEVVGL 704
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 124/285 (43%), Gaps = 24/285 (8%)
Query: 534 STEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHD 593
+ +DL + + ++ + G +K +S + R G K A+ +++D + + + + +
Sbjct: 604 AVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNG--KIAISFREDDELIAVRLTSGQE 661
Query: 594 YILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNN 653
IL +++ L + R + G + +L+ +++ + N D
Sbjct: 662 DILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGLDVAHANSVD----- 713
Query: 654 YVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDF-LIGAALTDGSYDIMLFSDSG 710
V + T G K+T ++++ SN GI ++ + ++ G D+M+ +++G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773
Query: 711 KAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALL--------VSNNQKQSVLTATENG- 761
+R + + GR+A+GV +RL Q V + +N +QS T +E+G
Sbjct: 774 VIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSEDGT 833
Query: 762 -YGKRTLIKEYTKHNRGTKGIISIKTNKRNGKV-VAATLVNRYHE 804
+ ++ + T N +I + N +G++ V ++R E
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEVRQDFMDRVEE 878
>sp|Q932M0|GYRA_STAAM DNA gyrase subunit A OS=Staphylococcus aureus (strain Mu50 / ATCC
700699) GN=gyrA PE=1 SV=1
Length = 889
Score = 768 bits (1983), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/823 (47%), Positives = 562/823 (68%), Gaps = 46/823 (5%)
Query: 16 EMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMG 75
EM +S+LDYAMSVIV RALPDVRDGLKPVHRR+L+ ++E ++ + K AR+VG+ MG
Sbjct: 17 EMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMG 76
Query: 76 KYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELL 135
KYHPHGD+SIY+A+VRMAQ FS R LVDGQGNFGS+DGD AAAMRYTE R+ KI+ ELL
Sbjct: 77 KYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELL 136
Query: 136 IDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVL 195
D++K+TIDFI NYDG E+EPSVLP R PNLL NG+SGIAVGMATNIPPHNLTE+I+GVL
Sbjct: 137 RDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVL 196
Query: 196 YVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNREN 255
+ NP+ SI +L++ I PDFPTAG+I G S + Y TG+G + +R++ IEE
Sbjct: 197 SLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERG-GG 255
Query: 256 RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIPE 314
R I++ E+P+QVNK ++EKI++LV++KK++ I++LRDE+ ++G+R+VI+++++
Sbjct: 256 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANAS 315
Query: 315 IVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR 374
++LN LYKQT LQ +FG+NM+ALVNG+PKL+NLKE L +++ H+K V++RRT + LRKA+
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAK 375
Query: 375 EYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTI 434
+ AHILEGL IAL +ID I IR + T + A
Sbjct: 376 DRAHILEGLRIALDHIDEIISTIRESDTDKVA---------------------------- 407
Query: 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILS 494
+ LQ +KLS+ QAQ IL M L+RLT +E+ KI +Y ++ + +L IL+
Sbjct: 408 -----MKSLQQR--FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILA 460
Query: 495 NSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLSNLGY 553
+ + +++++ DEL I++++G RR+EI L EDLI + +VITLS+ Y
Sbjct: 461 DEEVLLQLVRDELTEIRDRFGDD----RRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613
IK P+S YRAQ RGGRG + M T +ED+++QL +THD++L F+N GR+Y LK +++P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576
Query: 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS 673
+ SR S+G P++N L+N E I+ ++ + + + ++N++ +T G+VK++ LSNFS
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE---SEDNFLVFATKRGVVKRSALSNFS 633
Query: 674 NPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGM 733
++G IA++ +D LI LT G DI++ + +RF E+++R +GR+A GV G+
Sbjct: 634 RINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGI 693
Query: 734 RLEKKQKVIALLVSN-NQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
L + +V+ L V++ N VL TENGYGKRT + +Y NRG KGI + +RNG
Sbjct: 694 TLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGN 753
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILI 835
VV T V ++M++T G++IR V++I + GR+ QGV LI
Sbjct: 754 VVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLI 796
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 649 FPKNNYVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDFLIGAALTDGSYD-IML 705
P+ V + +K+ +S + N G+ +N EDF + +T ++D ++
Sbjct: 502 IPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDF-VSQLVTLSTHDHVLF 560
Query: 706 FSDSGKAVRFNENSVRAMGRSARG---VIGMRLEKKQKVIALLVSNNQKQS----VLTAT 758
F++ G+ + V + R ++G V + LE + VI+ +++ +S ++ AT
Sbjct: 561 FTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDE-VISTMIAVKDLESEDNFLVFAT 619
Query: 759 ENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTR 818
+ G KR+ + +++ NR K IS + + +++A L + +I++ T+ LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGKIAISFREDD---ELIAVRLTSGQEDILIGTSHASLIRFP 676
Query: 819 VSEIRKMGRSTQGVILITVENKSKLCGV 846
S +R +GR+ GV IT+ ++ G+
Sbjct: 677 ESTLRPLGRTATGVKGITLREGDEVVGL 704
Score = 39.3 bits (90), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 124/285 (43%), Gaps = 24/285 (8%)
Query: 534 STEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHD 593
+ +DL + + ++ + G +K +S + R G K A+ +++D + + + + +
Sbjct: 604 AVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNG--KIAISFREDDELIAVRLTSGQE 661
Query: 594 YILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNN 653
IL +++ L + R + G + +L+ +++ + N D
Sbjct: 662 DILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGLDVAHANSVD----- 713
Query: 654 YVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDF-LIGAALTDGSYDIMLFSDSG 710
V + T G K+T ++++ SN GI ++ + ++ G D+M+ +++G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773
Query: 711 KAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALL--------VSNNQKQSVLTATENG- 761
+R + + GR+A+GV +RL Q V + +N +QS T +E+G
Sbjct: 774 VIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSEDGT 833
Query: 762 -YGKRTLIKEYTKHNRGTKGIISIKTNKRNGKV-VAATLVNRYHE 804
+ ++ + T N +I + N +G++ V ++R E
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEVRQDFMDRVEE 878
>sp|Q6GKT9|GYRA_STAAR DNA gyrase subunit A OS=Staphylococcus aureus (strain MRSA252)
GN=gyrA PE=3 SV=1
Length = 886
Score = 768 bits (1982), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/823 (47%), Positives = 562/823 (68%), Gaps = 46/823 (5%)
Query: 16 EMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMG 75
EM +S+LDYAMSVIV RALPDVRDGLKPVHRR+L+ ++E ++ + K AR+VG+ MG
Sbjct: 17 EMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMG 76
Query: 76 KYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELL 135
KYHPHGD+SIY+A+VRMAQ FS R LVDGQGNFGS+DGD AAAMRYTE R+ KI+ ELL
Sbjct: 77 KYHPHGDLSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELL 136
Query: 136 IDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVL 195
D++K+TIDFI NYDG E+EPSVLP R PNLL NG+SGIAVGMATNIPPHNLTE+I+GVL
Sbjct: 137 RDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVL 196
Query: 196 YVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNREN 255
+ NP+ SI +L++ I PDFPTAG+I G S + Y TG+G + +R++ IEE
Sbjct: 197 SLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERG-GG 255
Query: 256 RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIPE 314
R I++ E+P+QVNK ++EKI++LV++KK++ I++LRDE+ ++G+R+VI+++++
Sbjct: 256 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANAS 315
Query: 315 IVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR 374
++LN LYKQT LQ +FG+NM+ALVNG+PKL+NLKE L +++ H+K V++RRT + LRKA+
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAK 375
Query: 375 EYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTI 434
+ AHILEGL IAL +ID I IR + T + A
Sbjct: 376 DRAHILEGLRIALDHIDEIISTIRESETDKVA---------------------------- 407
Query: 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILS 494
+ LQ +KLS+ QAQ IL M L+RLT +E+ KI +Y ++ + +L IL+
Sbjct: 408 -----MESLQQR--FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILA 460
Query: 495 NSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLSNLGY 553
+ + +++++ DEL I++++G RR+EI L EDLI + +VITLS+ Y
Sbjct: 461 DEEVLLQLVRDELTEIRDRFGDD----RRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613
IK P+S YRAQ RGGRG + M T +ED+++QL +THD++L F+N GR+Y LK +++P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576
Query: 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS 673
+ SR S+G P++N L+N E I+ ++ + + + ++N++ +T G+VK++ LSNFS
Sbjct: 577 ELSRQSKGIPVVNAIELENDEIISTMIAVKDLE---SEDNFLVFATKRGVVKRSALSNFS 633
Query: 674 NPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGM 733
++G IA++ +D LI LT G DI++ + +RF E+++R +GR+A GV G+
Sbjct: 634 RINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGI 693
Query: 734 RLEKKQKVIALLVSN-NQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
L + +V+ L V++ N VL TENGYGKRT + +Y NRG KGI + +RNG
Sbjct: 694 TLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGN 753
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILI 835
VV T V ++M++T G++IR V++I + GR+ QGV LI
Sbjct: 754 VVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLI 796
Score = 51.6 bits (122), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 100/207 (48%), Gaps = 13/207 (6%)
Query: 649 FPKNNYVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDFLIGAALTDGSYD-IML 705
P+ V + +K+ +S + N G+ +N EDF + +T ++D ++
Sbjct: 502 IPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDF-VSQLVTLSTHDHVLF 560
Query: 706 FSDSGKAVRFNENSVRAMGRSARG---VIGMRLEKKQ---KVIALLVSNNQKQSVLTATE 759
F++ G+ + V + R ++G V + LE + +IA+ ++ ++ AT+
Sbjct: 561 FTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDEIISTMIAVKDLESEDNFLVFATK 620
Query: 760 NGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRV 819
G KR+ + +++ NR K IS + + +++A L + +I++ T+ LIR
Sbjct: 621 RGVVKRSALSNFSRINRNGKIAISFREDD---ELIAVRLTSGQEDILIGTSHASLIRFPE 677
Query: 820 SEIRKMGRSTQGVILITVENKSKLCGV 846
S +R +GR+ GV IT+ ++ G+
Sbjct: 678 STLRPLGRTATGVKGITLREGDEVVGL 704
>sp|Q99XG5|GYRA_STAAN DNA gyrase subunit A OS=Staphylococcus aureus (strain N315) GN=gyrA
PE=1 SV=1
Length = 889
Score = 767 bits (1981), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/823 (47%), Positives = 561/823 (68%), Gaps = 46/823 (5%)
Query: 16 EMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMG 75
EM +S+LDYAMSVIV RALPDVRDGLKPVHRR+L+ ++E ++ + K AR+VG+ MG
Sbjct: 17 EMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMG 76
Query: 76 KYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELL 135
KYHPHGD SIY+A+VRMAQ FS R LVDGQGNFGS+DGD AAAMRYTE R+ KI+ ELL
Sbjct: 77 KYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELL 136
Query: 136 IDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVL 195
D++K+TIDFI NYDG E+EPSVLP R PNLL NG+SGIAVGMATNIPPHNLTE+I+GVL
Sbjct: 137 RDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVL 196
Query: 196 YVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNREN 255
+ NP+ SI +L++ I PDFPTAG+I G S + Y TG+G + +R++ IEE
Sbjct: 197 SLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERG-GG 255
Query: 256 RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIPE 314
R I++ E+P+QVNK ++EKI++LV++KK++ I++LRDE+ ++G+R+VI+++++
Sbjct: 256 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANAS 315
Query: 315 IVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR 374
++LN LYKQT LQ +FG+NM+ALVNG+PKL+NLKE L +++ H+K V++RRT + LRKA+
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAK 375
Query: 375 EYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTI 434
+ AHILEGL IAL +ID I IR + T + A
Sbjct: 376 DRAHILEGLRIALDHIDEIISTIRESDTDKVA---------------------------- 407
Query: 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILS 494
+ LQ +KLS+ QAQ IL M L+RLT +E+ KI +Y ++ + +L IL+
Sbjct: 408 -----MESLQQR--FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELETILA 460
Query: 495 NSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLSNLGY 553
+ + +++++ DEL I++++G RR+EI L EDLI + +VITLS+ Y
Sbjct: 461 DEEVLLQLVRDELTEIRDRFGDD----RRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613
IK P+S YRAQ RGGRG + M T +ED+++QL +THD++L F+N GR+Y LK +++P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576
Query: 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS 673
+ SR S+G P++N L+N E I+ ++ + + + ++N++ +T G+VK++ LSNFS
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE---SEDNFLVFATKRGVVKRSALSNFS 633
Query: 674 NPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGM 733
++G IA++ +D LI LT G DI++ + +RF E+++R +GR+A GV G+
Sbjct: 634 RINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGI 693
Query: 734 RLEKKQKVIALLVSN-NQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
L + +V+ L V++ N VL TENGYGKRT + +Y NRG KGI + +RNG
Sbjct: 694 TLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGN 753
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILI 835
VV T V ++M++T G++IR V++I + GR+ QGV LI
Sbjct: 754 VVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLI 796
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 649 FPKNNYVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDFLIGAALTDGSYD-IML 705
P+ V + +K+ +S + N G+ +N EDF + +T ++D ++
Sbjct: 502 IPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDF-VSQLVTLSTHDHVLF 560
Query: 706 FSDSGKAVRFNENSVRAMGRSARG---VIGMRLEKKQKVIALLVSNNQKQS----VLTAT 758
F++ G+ + V + R ++G V + LE + VI+ +++ +S ++ AT
Sbjct: 561 FTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDE-VISTMIAVKDLESEDNFLVFAT 619
Query: 759 ENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTR 818
+ G KR+ + +++ NR K IS + + +++A L + +I++ T+ LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGKIAISFREDD---ELIAVRLTSGQEDILIGTSHASLIRFP 676
Query: 819 VSEIRKMGRSTQGVILITVENKSKLCGV 846
S +R +GR+ GV IT+ ++ G+
Sbjct: 677 ESTLRPLGRTATGVKGITLREGDEVVGL 704
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 124/285 (43%), Gaps = 24/285 (8%)
Query: 534 STEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHD 593
+ +DL + + ++ + G +K +S + R G K A+ +++D + + + + +
Sbjct: 604 AVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNG--KIAISFREDDELIAVRLTSGQE 661
Query: 594 YILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNN 653
IL +++ L + R + G + +L+ +++ + N D
Sbjct: 662 DILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGLDVAHANSVD----- 713
Query: 654 YVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDF-LIGAALTDGSYDIMLFSDSG 710
V + T G K+T ++++ SN GI ++ + ++ G D+M+ +++G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773
Query: 711 KAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALL--------VSNNQKQSVLTATENG- 761
+R + + GR+A+GV +RL Q V + +N +QS T +E+G
Sbjct: 774 VIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSEDGT 833
Query: 762 -YGKRTLIKEYTKHNRGTKGIISIKTNKRNGKV-VAATLVNRYHE 804
+ ++ + T N +I + N +G++ V ++R E
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEVRQDFMDRVEE 878
>sp|Q8NKW8|GYRA_STAAW DNA gyrase subunit A OS=Staphylococcus aureus (strain MW2) GN=gyrA
PE=3 SV=1
Length = 887
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/823 (47%), Positives = 561/823 (68%), Gaps = 46/823 (5%)
Query: 16 EMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMG 75
EM +S+LDYAMSVIV RALPDVRDGLKPVHRR+L+ ++E ++ + K AR+VG+ MG
Sbjct: 17 EMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMG 76
Query: 76 KYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELL 135
KYHPHGD SIY+A+VRMAQ FS R LVDGQGNFGS+DGD AAAMRYTE R+ KI+ ELL
Sbjct: 77 KYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELL 136
Query: 136 IDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVL 195
D++K+TIDFI NYDG E+EPSVLP R PNLL NG+SGIAVGMATNIPPHNLTE+I+GVL
Sbjct: 137 RDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVL 196
Query: 196 YVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNREN 255
+ NP+ SI +L++ I PDFPTAG+I G S + Y TG+G + +R++ IEE
Sbjct: 197 SLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERG-GG 255
Query: 256 RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIPE 314
R I++ E+P+QVNK ++EKI++LV++KK++ I++LRDE+ ++G+R+VI+++++
Sbjct: 256 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANAS 315
Query: 315 IVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR 374
++LN LYKQT LQ +FG+NM+ALVNG+PKL+NLKE L +++ H+K V++RRT + LRKA+
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAK 375
Query: 375 EYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTI 434
+ AHILEGL IAL +ID I IR + T + A
Sbjct: 376 DRAHILEGLRIALDHIDEIISTIRESDTDKVA---------------------------- 407
Query: 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILS 494
+ LQ +KLS+ QAQ IL M L+RLT +E+ KI +Y ++ + +L IL+
Sbjct: 408 -----MESLQQR--FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILA 460
Query: 495 NSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLSNLGY 553
+ + +++++ DEL I++++G RR+EI L EDLI + +VITLS+ Y
Sbjct: 461 DEEVLLQLVRDELTEIRDRFGDD----RRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613
IK P+S YRAQ RGGRG + M T +ED+++QL +THD++L F+N GR+Y LK +++P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576
Query: 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS 673
+ SR S+G P++N L+N E I+ ++ + + + ++N++ +T G+VK++ LSNFS
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE---SEDNFLVFATKRGVVKRSALSNFS 633
Query: 674 NPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGM 733
++G IA++ +D LI LT G DI++ + +RF E+++R +GR+A GV G+
Sbjct: 634 RINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGI 693
Query: 734 RLEKKQKVIALLVSN-NQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
L + +V+ L V++ N VL TENGYGKRT + +Y NRG KGI + +RNG
Sbjct: 694 TLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGN 753
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILI 835
VV T V ++M++T G++IR V++I + GR+ QGV LI
Sbjct: 754 VVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLI 796
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 649 FPKNNYVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDFLIGAALTDGSYD-IML 705
P+ V + +K+ +S + N G+ +N EDF + +T ++D ++
Sbjct: 502 IPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDF-VSQLVTLSTHDHVLF 560
Query: 706 FSDSGKAVRFNENSVRAMGRSARG---VIGMRLEKKQKVIALLVSNNQKQS----VLTAT 758
F++ G+ + V + R ++G V + LE + VI+ +++ +S ++ AT
Sbjct: 561 FTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDE-VISTMIAVKDLESEDNFLVFAT 619
Query: 759 ENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTR 818
+ G KR+ + +++ NR K IS + + +++A L + +I++ T+ LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGKIAISFREDD---ELIAVRLTSGQEDILIGTSHASLIRFP 676
Query: 819 VSEIRKMGRSTQGVILITVENKSKLCGV 846
S +R +GR+ GV IT+ ++ G+
Sbjct: 677 ESTLRPLGRTATGVKGITLREGDEVVGL 704
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 124/285 (43%), Gaps = 24/285 (8%)
Query: 534 STEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHD 593
+ +DL + + ++ + G +K +S + R G K A+ +++D + + + + +
Sbjct: 604 AVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNG--KIAISFREDDELIAVRLTSGQE 661
Query: 594 YILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNN 653
IL +++ L + R + G + +L+ +++ + N D
Sbjct: 662 DILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGLDVAHANSVD----- 713
Query: 654 YVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDF-LIGAALTDGSYDIMLFSDSG 710
V + T G K+T ++++ SN GI ++ + ++ G D+M+ +++G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773
Query: 711 KAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALL--------VSNNQKQSVLTATENG- 761
+R + + GR+A+GV +RL Q V + +N +QS T +E+G
Sbjct: 774 VIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSEDGT 833
Query: 762 -YGKRTLIKEYTKHNRGTKGIISIKTNKRNGKV-VAATLVNRYHE 804
+ ++ + T N +I + N +G++ V ++R E
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEVRQDFMDRVEE 878
>sp|Q6GD84|GYRA_STAAS DNA gyrase subunit A OS=Staphylococcus aureus (strain MSSA476)
GN=gyrA PE=3 SV=1
Length = 887
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/823 (47%), Positives = 561/823 (68%), Gaps = 46/823 (5%)
Query: 16 EMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMG 75
EM +S+LDYAMSVIV RALPDVRDGLKPVHRR+L+ ++E ++ + K AR+VG+ MG
Sbjct: 17 EMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMG 76
Query: 76 KYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELL 135
KYHPHGD SIY+A+VRMAQ FS R LVDGQGNFGS+DGD AAAMRYTE R+ KI+ ELL
Sbjct: 77 KYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELL 136
Query: 136 IDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVL 195
D++K+TIDFI NYDG E+EPSVLP R PNLL NG+SGIAVGMATNIPPHNLTE+I+GVL
Sbjct: 137 RDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVL 196
Query: 196 YVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNREN 255
+ NP+ SI +L++ I PDFPTAG+I G S + Y TG+G + +R++ IEE
Sbjct: 197 SLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERG-GG 255
Query: 256 RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIPE 314
R I++ E+P+QVNK ++EKI++LV++KK++ I++LRDE+ ++G+R+VI+++++
Sbjct: 256 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANAS 315
Query: 315 IVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR 374
++LN LYKQT LQ +FG+NM+ALVNG+PKL+NLKE L +++ H+K V++RRT + LRKA+
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAK 375
Query: 375 EYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTI 434
+ AHILEGL IAL +ID I IR + T + A
Sbjct: 376 DRAHILEGLRIALDHIDEIISTIRESDTDKVA---------------------------- 407
Query: 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILS 494
+ LQ +KLS+ QAQ IL M L+RLT +E+ KI +Y ++ + +L IL+
Sbjct: 408 -----MESLQQR--FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILA 460
Query: 495 NSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLSNLGY 553
+ + +++++ DEL I++++G RR+EI L EDLI + +VITLS+ Y
Sbjct: 461 DEEVLLQLVRDELTEIRDRFGDD----RRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613
IK P+S YRAQ RGGRG + M T +ED+++QL +THD++L F+N GR+Y LK +++P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576
Query: 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS 673
+ SR S+G P++N L+N E I+ ++ + + + ++N++ +T G+VK++ LSNFS
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE---SEDNFLVFATKRGVVKRSALSNFS 633
Query: 674 NPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGM 733
++G IA++ +D LI LT G DI++ + +RF E+++R +GR+A GV G+
Sbjct: 634 RINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGI 693
Query: 734 RLEKKQKVIALLVSN-NQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
L + +V+ L V++ N VL TENGYGKRT + +Y NRG KGI + +RNG
Sbjct: 694 TLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGN 753
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILI 835
VV T V ++M++T G++IR V++I + GR+ QGV LI
Sbjct: 754 VVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLI 796
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 649 FPKNNYVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDFLIGAALTDGSYD-IML 705
P+ V + +K+ +S + N G+ +N EDF + +T ++D ++
Sbjct: 502 IPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDF-VSQLVTLSTHDHVLF 560
Query: 706 FSDSGKAVRFNENSVRAMGRSARG---VIGMRLEKKQKVIALLVSNNQKQS----VLTAT 758
F++ G+ + V + R ++G V + LE + VI+ +++ +S ++ AT
Sbjct: 561 FTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDE-VISTMIAVKDLESEDNFLVFAT 619
Query: 759 ENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTR 818
+ G KR+ + +++ NR K IS + + +++A L + +I++ T+ LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGKIAISFREDD---ELIAVRLTSGQEDILIGTSHASLIRFP 676
Query: 819 VSEIRKMGRSTQGVILITVENKSKLCGV 846
S +R +GR+ GV IT+ ++ G+
Sbjct: 677 ESTLRPLGRTATGVKGITLREGDEVVGL 704
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 124/285 (43%), Gaps = 24/285 (8%)
Query: 534 STEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHD 593
+ +DL + + ++ + G +K +S + R G K A+ +++D + + + + +
Sbjct: 604 AVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNG--KIAISFREDDELIAVRLTSGQE 661
Query: 594 YILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNN 653
IL +++ L + R + G + +L+ +++ + N D
Sbjct: 662 DILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGLDVAHANSVD----- 713
Query: 654 YVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDF-LIGAALTDGSYDIMLFSDSG 710
V + T G K+T ++++ SN GI ++ + ++ G D+M+ +++G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773
Query: 711 KAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALL--------VSNNQKQSVLTATENG- 761
+R + + GR+A+GV +RL Q V + +N +QS T +E+G
Sbjct: 774 VIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSEDGT 833
Query: 762 -YGKRTLIKEYTKHNRGTKGIISIKTNKRNGKV-VAATLVNRYHE 804
+ ++ + T N +I + N +G++ V ++R E
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEVRQDFMDRVEE 878
>sp|Q2G2Q0|GYRA_STAA8 DNA gyrase subunit A OS=Staphylococcus aureus (strain NCTC 8325)
GN=gyrA PE=1 SV=1
Length = 887
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/823 (47%), Positives = 561/823 (68%), Gaps = 46/823 (5%)
Query: 16 EMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMG 75
EM +S+LDYAMSVIV RALPDVRDGLKPVHRR+L+ ++E ++ + K AR+VG+ MG
Sbjct: 17 EMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMG 76
Query: 76 KYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELL 135
KYHPHGD SIY+A+VRMAQ FS R LVDGQGNFGS+DGD AAAMRYTE R+ KI+ ELL
Sbjct: 77 KYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELL 136
Query: 136 IDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVL 195
D++K+TIDFI NYDG E+EPSVLP R PNLL NG+SGIAVGMATNIPPHNLTE+I+GVL
Sbjct: 137 RDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVL 196
Query: 196 YVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNREN 255
+ NP+ SI +L++ I PDFPTAG+I G S + Y TG+G + +R++ IEE
Sbjct: 197 SLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERG-GG 255
Query: 256 RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIPE 314
R I++ E+P+QVNK ++EKI++LV++KK++ I++LRDE+ ++G+R+VI+++++
Sbjct: 256 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANAS 315
Query: 315 IVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR 374
++LN LYKQT LQ +FG+NM+ALVNG+PKL+NLKE L +++ H+K V++RRT + LRKA+
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAK 375
Query: 375 EYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTI 434
+ AHILEGL IAL +ID I IR + T + A
Sbjct: 376 DRAHILEGLRIALDHIDEIISTIRESDTDKVA---------------------------- 407
Query: 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILS 494
+ LQ +KLS+ QAQ IL M L+RLT +E+ KI +Y ++ + +L IL+
Sbjct: 408 -----MESLQQR--FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILA 460
Query: 495 NSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLSNLGY 553
+ + +++++ DEL I++++G RR+EI L EDLI + +VITLS+ Y
Sbjct: 461 DEEVLLQLVRDELTEIRDRFGDD----RRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613
IK P+S YRAQ RGGRG + M T +ED+++QL +THD++L F+N GR+Y LK +++P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576
Query: 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS 673
+ SR S+G P++N L+N E I+ ++ + + + ++N++ +T G+VK++ LSNFS
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE---SEDNFLVFATKRGVVKRSALSNFS 633
Query: 674 NPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGM 733
++G IA++ +D LI LT G DI++ + +RF E+++R +GR+A GV G+
Sbjct: 634 RINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGI 693
Query: 734 RLEKKQKVIALLVSN-NQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
L + +V+ L V++ N VL TENGYGKRT + +Y NRG KGI + +RNG
Sbjct: 694 TLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGN 753
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILI 835
VV T V ++M++T G++IR V++I + GR+ QGV LI
Sbjct: 754 VVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLI 796
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 649 FPKNNYVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDFLIGAALTDGSYD-IML 705
P+ V + +K+ +S + N G+ +N EDF + +T ++D ++
Sbjct: 502 IPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDF-VSQLVTLSTHDHVLF 560
Query: 706 FSDSGKAVRFNENSVRAMGRSARG---VIGMRLEKKQKVIALLVSNNQKQS----VLTAT 758
F++ G+ + V + R ++G V + LE + VI+ +++ +S ++ AT
Sbjct: 561 FTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDE-VISTMIAVKDLESEDNFLVFAT 619
Query: 759 ENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTR 818
+ G KR+ + +++ NR K IS + + +++A L + +I++ T+ LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGKIAISFREDD---ELIAVRLTSGQEDILIGTSHASLIRFP 676
Query: 819 VSEIRKMGRSTQGVILITVENKSKLCGV 846
S +R +GR+ GV IT+ ++ G+
Sbjct: 677 ESTLRPLGRTATGVKGITLREGDEVVGL 704
Score = 39.3 bits (90), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 124/285 (43%), Gaps = 24/285 (8%)
Query: 534 STEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHD 593
+ +DL + + ++ + G +K +S + R G K A+ +++D + + + + +
Sbjct: 604 AVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNG--KIAISFREDDELIAVRLTSGQE 661
Query: 594 YILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNN 653
IL +++ L + R + G + +L+ +++ + N D
Sbjct: 662 DILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGLDVAHANSVD----- 713
Query: 654 YVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDF-LIGAALTDGSYDIMLFSDSG 710
V + T G K+T ++++ SN GI ++ + ++ G D+M+ +++G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773
Query: 711 KAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALL--------VSNNQKQSVLTATENG- 761
+R + + GR+A+GV +RL Q V + +N +QS T +E+G
Sbjct: 774 VIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSEDGT 833
Query: 762 -YGKRTLIKEYTKHNRGTKGIISIKTNKRNGKV-VAATLVNRYHE 804
+ ++ + T N +I + N +G++ V ++R E
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEVRQDFMDRVEE 878
>sp|P20831|GYRA_STAAU DNA gyrase subunit A OS=Staphylococcus aureus GN=gyrA PE=1 SV=3
Length = 889
Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 389/823 (47%), Positives = 561/823 (68%), Gaps = 46/823 (5%)
Query: 16 EMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMG 75
EM +S+LDYAMSVIV RALPDVRDGLKPVHRR+L+ ++E ++ + K AR+VG+ MG
Sbjct: 17 EMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMG 76
Query: 76 KYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELL 135
KYHPHGD SIY+A+VRMAQ FS R LVDGQGNFGS+DGD AAAMRYTE R+ KI+ ELL
Sbjct: 77 KYHPHGDSSIYEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRYTEARMTKITLELL 136
Query: 136 IDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVL 195
D++K+TIDFI NYDG E+EPSVLP R PNLL NG+SGIAVGMATNIPPHNLTE+I+GVL
Sbjct: 137 RDINKDTIDFIDNYDGNEREPSVLPARFPNLLANGASGIAVGMATNIPPHNLTELINGVL 196
Query: 196 YVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNREN 255
+ NP+ SI +L++ I PDFPTAG+I G S + Y TG+G + +R++ IEE
Sbjct: 197 SLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSRAVIEERG-GG 255
Query: 256 RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESD-KSGMRIVIELKRNEIPE 314
R I++ E+P+QVNK ++EKI++LV++KK++ I++LRDE+ ++G+R+VI+++++
Sbjct: 256 RQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANAS 315
Query: 315 IVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAR 374
++LN LYKQT LQ +FG+NM+ALVNG+PKL+NLKE L +++ H+K V++RRT + LRKA+
Sbjct: 316 VILNNLYKQTPLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAK 375
Query: 375 EYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTI 434
+ AHILEGL IAL +ID I IR + T + A
Sbjct: 376 DRAHILEGLRIALDHIDEIISTIRESDTDKVA---------------------------- 407
Query: 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILS 494
+ LQ +KLS+ QAQ IL M L+RLT +E+ KI +Y ++ + +L IL+
Sbjct: 408 -----MESLQQR--FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLNYISELEAILA 460
Query: 495 NSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINP-STEDLIASQDMVITLSNLGY 553
+ + +++++ DEL I++++G RR+EI L EDLI + +VITLS+ Y
Sbjct: 461 DEEVLLQLVRDELTEIRDRFGDD----RRTEIQLGGFEDLEDEDLIPEEQIVITLSHNNY 516
Query: 554 IKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613
IK P+S YRAQ RGGRG + M T +ED+++QL +THD++L F+N GR+Y LK +++P
Sbjct: 517 IKRLPVSTYRAQNRGGRGVQGMNTLEEDFVSQLVTLSTHDHVLFFTNKGRVYKLKGYEVP 576
Query: 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFS 673
+ SR S+G P++N L+N E I+ ++ + + + ++N++ +T G+VK++ LSNFS
Sbjct: 577 ELSRQSKGIPVVNAIELENDEVISTMIAVKDLE---SEDNFLVFATKRGVVKRSALSNFS 633
Query: 674 NPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGM 733
++G IA++ +D LI LT G DI++ + +RF E+++R +GR+A GV G+
Sbjct: 634 RINRNGKIAISFREDDELIAVRLTSGQEDILIGTSHASLIRFPESTLRPLGRTATGVKGI 693
Query: 734 RLEKKQKVIALLVSN-NQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
L + +V+ L V++ N VL TENGYGKRT + +Y NRG KGI + +RNG
Sbjct: 694 TLREGDEVVGLDVAHANSVDEVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGN 753
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILI 835
VV T V ++M++T G++IR V++I + GR+ QGV LI
Sbjct: 754 VVCITTVTGEEDLMIVTNAGVIIRLDVADISQNGRAAQGVRLI 796
Score = 52.0 bits (123), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 102/208 (49%), Gaps = 15/208 (7%)
Query: 649 FPKNNYVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDFLIGAALTDGSYD-IML 705
P+ V + +K+ +S + N G+ +N EDF + +T ++D ++
Sbjct: 502 IPEEQIVITLSHNNYIKRLPVSTYRAQNRGGRGVQGMNTLEEDF-VSQLVTLSTHDHVLF 560
Query: 706 FSDSGKAVRFNENSVRAMGRSARG---VIGMRLEKKQKVIALLVSNNQKQS----VLTAT 758
F++ G+ + V + R ++G V + LE + VI+ +++ +S ++ AT
Sbjct: 561 FTNKGRVYKLKGYEVPELSRQSKGIPVVNAIELENDE-VISTMIAVKDLESEDNFLVFAT 619
Query: 759 ENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTR 818
+ G KR+ + +++ NR K IS + + +++A L + +I++ T+ LIR
Sbjct: 620 KRGVVKRSALSNFSRINRNGKIAISFREDD---ELIAVRLTSGQEDILIGTSHASLIRFP 676
Query: 819 VSEIRKMGRSTQGVILITVENKSKLCGV 846
S +R +GR+ GV IT+ ++ G+
Sbjct: 677 ESTLRPLGRTATGVKGITLREGDEVVGL 704
Score = 39.3 bits (90), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 55/285 (19%), Positives = 124/285 (43%), Gaps = 24/285 (8%)
Query: 534 STEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHD 593
+ +DL + + ++ + G +K +S + R G K A+ +++D + + + + +
Sbjct: 604 AVKDLESEDNFLVFATKRGVVKRSALSNFSRINRNG--KIAISFREDDELIAVRLTSGQE 661
Query: 594 YILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNN 653
IL +++ L + R + G + +L+ +++ + N D
Sbjct: 662 DILIGTSHASLIRFPESTLRPLGRTATG---VKGITLREGDEVVGLDVAHANSVD----- 713
Query: 654 YVFMSTSLGIVKKTLLSNF--SNPRKSGIIAVNLSNEDF-LIGAALTDGSYDIMLFSDSG 710
V + T G K+T ++++ SN GI ++ + ++ G D+M+ +++G
Sbjct: 714 EVLVVTENGYGKRTPVNDYRLSNRGGKGIKTATITERNGNVVCITTVTGEEDLMIVTNAG 773
Query: 711 KAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALL--------VSNNQKQSVLTATENG- 761
+R + + GR+A+GV +RL Q V + +N +QS T +E+G
Sbjct: 774 VIIRLDVADISQNGRAAQGVRLIRLGDDQFVSTVAKVKEDAEDETNEDEQSTSTVSEDGT 833
Query: 762 -YGKRTLIKEYTKHNRGTKGIISIKTNKRNGKV-VAATLVNRYHE 804
+ ++ + T N +I + N +G++ V ++R E
Sbjct: 834 EQQREAVVNDETPGNAIHTEVIDSEENDEDGRIEVRQDFMDRVEE 878
>sp|Q9JZ44|RS1_NEIMB 30S ribosomal protein S1 OS=Neisseria meningitidis serogroup B
(strain MC58) GN=rpsA PE=1 SV=1
Length = 561
Score = 762 bits (1968), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/555 (65%), Positives = 460/555 (82%), Gaps = 7/555 (1%)
Query: 1067 LDCFATLFKESLLRHDMRSGEVISAEVIGLDRNFVIINADLKSEAFIPIEEFKNDNGELE 1126
++ FA L +ES +M GEVI+AEV+ +D+NFV +NA LKSE+ I + EFKN GE+E
Sbjct: 3 MENFAQLLEESFTLQEMNPGEVITAEVVAIDQNFVTVNAGLKSESLIDVAEFKNAQGEIE 62
Query: 1127 VKIGDFVSVAIESLENGFGDTILSRDKAKRLASWLSLEKAMESGEIITGTINGKVKGGLT 1186
VK+GDFV+V IES+ENGFG+T LSR+KAKR A W++LE+AME+G+I++G INGKVKGGLT
Sbjct: 63 VKVGDFVTVTIESVENGFGETKLSREKAKRAADWIALEEAMENGDILSGIINGKVKGGLT 122
Query: 1187 VLTNGLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEE 1246
V+ + ++AFLPGSLVD+RPVKDT+ FEGK ++FKVIKLD+KRNNVV+S RAV+E ++GEE
Sbjct: 123 VMISSIRAFLPGSLVDVRPVKDTSHFEGKEIEFKVIKLDKKRNNVVVSRRAVLEATLGEE 182
Query: 1247 RQKLIETLKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDI 1306
R+ L+E L+EG +KG+VKNITDYGAF+DLGGIDGLLHITD+AWRRVKHPSE+L +GQ++
Sbjct: 183 RKALLENLQEGSVIKGIVKNITDYGAFVDLGGIDGLLHITDLAWRRVKHPSEVLEVGQEV 242
Query: 1307 STKILKYDQEKNRVSLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIE 1366
K+LK+DQEK RVSLGMKQLG DPW GL+ RYP+GTRL GKV+NLTDYGAFVEIE+GIE
Sbjct: 243 EAKVLKFDQEKQRVSLGMKQLGEDPWSGLTRRYPQGTRLFGKVSNLTDYGAFVEIEQGIE 302
Query: 1367 GLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFSIIH 1426
GLVH+SEMDW NKNV PSK+VQL D VE+MILEI+E RRRISLGMKQC+ NPWE F+ H
Sbjct: 303 GLVHVSEMDWTNKNVHPSKVVQLGDEVEVMILEIDEGRRRISLGMKQCQANPWEEFAANH 362
Query: 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILS 1486
KG+KI G +KSITDFG+F+GL G IDGL+HLSDLSWT+ GEE +R +KKG+E+EA++L+
Sbjct: 363 NKGDKISGAVKSITDFGVFVGLPGGIDGLVHLSDLSWTESGEEAVRKYKKGEEVEAVVLA 422
Query: 1487 IDVEKERISLGIKQLEGDPFNNYVNINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRI 1546
IDVEKERISLGIKQLEGDPF N++++NDKGSLV G +KS+D KGA+I LS+EVEGYL
Sbjct: 423 IDVEKERISLGIKQLEGDPFGNFISVNDKGSLVKGSVKSVDA-KGAVIALSDEVEGYLPA 481
Query: 1547 SE--EDNKHE--KKLKIGENIDVLTVLIDHKTRYIQLSFKKKEVIKKKKLLTSI--NANT 1600
SE D + KLK G+ ++ + V +D K R I+LS K K+ + ++ L S+ AN
Sbjct: 482 SEFAADRVEDLTTKLKEGDEVEAVIVTVDRKNRSIKLSVKAKDAKESREALNSVNAAANA 541
Query: 1601 ISGTTNLGLILKAEL 1615
+GTT+LG +LKA+L
Sbjct: 542 NAGTTSLGDLLKAKL 556
>sp|Q8DPM2|GYRA_STRR6 DNA gyrase subunit A OS=Streptococcus pneumoniae (strain ATCC
BAA-255 / R6) GN=gyrA PE=3 SV=1
Length = 822
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/840 (44%), Positives = 557/840 (66%), Gaps = 45/840 (5%)
Query: 6 KEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVK 65
K ++++ L +EM S++DYAMSVIV RALPDVRDGLKPVHRR+L+ M+E+ ++P K
Sbjct: 4 KNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKK 63
Query: 66 CARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTEC 125
AR+ G+ MGKYHPHGD SIY+A+VRMAQ +S R LVDG GNFGS+DGDSAAA RYTE
Sbjct: 64 SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTEA 123
Query: 126 RLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185
R++KI+ E+L D++K T+DF+ NYD E+EP VLP R PNLL+NG++GIAVGMATNIPPH
Sbjct: 124 RMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPH 183
Query: 186 NLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAK 245
NL E ID V V+ NPE + DL++++P PDFPT ++ G S +H Y TGKG +++R++
Sbjct: 184 NLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSR 243
Query: 246 THIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVI 305
T IE + R I++ E PY VNK + E I +LV+EK++E I+ +RDES++ G+R VI
Sbjct: 244 TEIET-TKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVI 302
Query: 306 ELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRR 365
E+KR+ ++LN L+K TQ+Q FG NMLA+ NG PK+L+L++IL +I H+KEV+ RR
Sbjct: 303 EVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRR 362
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
T F+ KA AHILEGL IAL +ID I+IIR++ T EA+ +++
Sbjct: 363 TRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK------------ 410
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKK 485
+KLS+ Q+Q IL M L+RLT +E+ KI ++Y++++
Sbjct: 411 -----------------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLAL 447
Query: 486 VIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAI-NPSTEDLIASQDM 544
+ DL DIL+ +R+ +II DEL+ +K K+ RR+E+++ + + EDLI D+
Sbjct: 448 IADLADILAKPERVSQIIKDELDEVKRKFSDK----RRTELMVGQVLSLEDEDLIEESDV 503
Query: 545 VITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRL 604
+ITLSN GYIK E+ AQKRGGRG + KD+D++ +L +THD++L F+N GR+
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRV 563
Query: 605 YWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIV 664
Y LK ++IP+ R ++G P++N+ L E I ++ + +++ D + Y+F +T GIV
Sbjct: 564 YRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSD---DAYLFFTTRHGIV 620
Query: 665 KKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMG 724
K+T + F+N R++G+ A+NL +ED LI L +G DI++ + G AVRFN+++VR M
Sbjct: 621 KRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS 680
Query: 725 RSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISI 784
R A GV G+ L + V+ + +Q + VL TE GYGKRT+ EY RG KG+ +
Sbjct: 681 RIATGVKGVNLREGDTVVGASLITDQDE-VLIITEKGYGKRTVATEYPTKGRGGKGMQTA 739
Query: 785 KTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLC 844
K ++NG + V ++M+IT G++IRT ++ I + GR+T GV ++ ++ +++
Sbjct: 740 KITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIV 799
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 16/212 (7%)
Query: 552 GYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQ 611
G +K + E+ ++ G KA+ KDED + + +A I+ + +G
Sbjct: 618 GIVKRTSVKEFANIRQNGL--KALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSA 675
Query: 612 IPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSN 671
+ SR + G +N+ +E TV+ + V + T G K+T+ +
Sbjct: 676 VRGMSRIATGVKGVNL-----REGDTVV-----GASLITDQDEVLIITEKGYGKRTVATE 725
Query: 672 FSNPRKSG--IIAVNLSNEDFLIGAALT-DGSYDIMLFSDSGKAVRFNENSVRAMGRSAR 728
+ + G + ++ ++ L+ +T G D+M+ +D+G +R N ++ GR+
Sbjct: 726 YPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATM 785
Query: 729 GVIGMRLEKKQKVIAL-LVSNNQKQSVLTATE 759
GV MRL++ +++ V+ +K+ V T E
Sbjct: 786 GVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817
>sp|P72524|GYRA_STRPN DNA gyrase subunit A OS=Streptococcus pneumoniae serotype 4 (strain
ATCC BAA-334 / TIGR4) GN=gyrA PE=3 SV=3
Length = 822
Score = 757 bits (1954), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/840 (44%), Positives = 557/840 (66%), Gaps = 45/840 (5%)
Query: 6 KEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVK 65
K ++++ L +EM S++DYAMSVIV RALPDVRDGLKPVHRR+L+ M+E+ ++P K
Sbjct: 4 KNLVNVNLTKEMKASFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKK 63
Query: 66 CARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTEC 125
AR+ G+ MGKYHPHGD SIY+A+VRMAQ +S R LVDG GNFGS+DGDSAAA RYTE
Sbjct: 64 SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRYMLVDGHGNFGSMDGDSAAAQRYTEA 123
Query: 126 RLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185
R++KI+ E+L D++K T+DF+ NYD E+EP VLP R PNLL+NG++GIAVGMATNIPPH
Sbjct: 124 RMSKIALEMLRDINKNTVDFVDNYDANEREPLVLPARFPNLLVNGATGIAVGMATNIPPH 183
Query: 186 NLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAK 245
NL E ID V V+ NPE + DL++++P PDFPT ++ G S +H Y TGKG +++R++
Sbjct: 184 NLGETIDAVKLVMDNPEVTTKDLMEVLPGPDFPTGALVMGKSGIHKAYETGKGSIVLRSR 243
Query: 246 THIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVI 305
T IE + R I++ E PY VNK + E I +LV+EK++E I+ +RDES++ G+R VI
Sbjct: 244 TEIET-TKTGRERIVVTEFPYMVNKTKVHEHIVRLVQEKRIEGITAVRDESNREGVRFVI 302
Query: 306 ELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRR 365
E+KR+ ++LN L+K TQ+Q FG NMLA+ NG PK+L+L++IL +I H+KEV+ RR
Sbjct: 303 EVKRDASANVILNNLFKMTQMQTNFGFNMLAIQNGIPKILSLRQILDAYIEHQKEVVVRR 362
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
T F+ KA AHILEGL IAL +ID I+IIR++ T EA+ +++
Sbjct: 363 TRFDKEKAEARAHILEGLLIALDHIDEVIRIIRASETDAEAQAELMSK------------ 410
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKK 485
+KLS+ Q+Q IL M L+RLT +E+ KI ++Y++++
Sbjct: 411 -----------------------FKLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLAL 447
Query: 486 VIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAI-NPSTEDLIASQDM 544
+ DL DIL+ +R+ +II DEL+ +K K+ RR+E+++ + + EDLI D+
Sbjct: 448 IADLADILAKPERVSQIIKDELDEVKRKFSDK----RRTELMIGQVLSLEDEDLIEESDV 503
Query: 545 VITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRL 604
+ITLSN GYIK E+ AQKRGGRG + KD+D++ +L +THD++L F+N GR+
Sbjct: 504 LITLSNRGYIKRLDQDEFTAQKRGGRGVQGTGVKDDDFVRELVSTSTHDHLLFFTNKGRV 563
Query: 605 YWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIV 664
Y LK ++IP+ R ++G P++N+ L E I ++ + +++ D + Y+F +T GIV
Sbjct: 564 YRLKGYEIPEYGRTAKGLPVVNLLKLDEDESIQTVINVESDRSD---DAYLFFTTRHGIV 620
Query: 665 KKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMG 724
K+T + F+N R++G+ A+NL +ED LI L +G DI++ + G AVRFN+++VR M
Sbjct: 621 KRTSVKEFANIRQNGLKALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSAVRGMS 680
Query: 725 RSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISI 784
R A GV G+ L + V+ + +Q + VL TE GYGKRT+ EY RG KG+ +
Sbjct: 681 RIATGVKGVNLREGDTVVGASLITDQDE-VLIITEKGYGKRTVATEYPTKGRGGKGMQTA 739
Query: 785 KTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLC 844
K ++NG + V ++M+IT G++IRT ++ I + GR+T GV ++ ++ +++
Sbjct: 740 KITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATMGVKVMRLDQDAQIV 799
Score = 44.7 bits (104), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 47/212 (22%), Positives = 95/212 (44%), Gaps = 16/212 (7%)
Query: 552 GYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQ 611
G +K + E+ ++ G KA+ KDED + + +A I+ + +G
Sbjct: 618 GIVKRTSVKEFANIRQNGL--KALNLKDEDELINVLLAEGDMDIIIGTKFGYAVRFNQSA 675
Query: 612 IPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSN 671
+ SR + G +N+ +E TV+ + V + T G K+T+ +
Sbjct: 676 VRGMSRIATGVKGVNL-----REGDTVV-----GASLITDQDEVLIITEKGYGKRTVATE 725
Query: 672 FSNPRKSG--IIAVNLSNEDFLIGAALT-DGSYDIMLFSDSGKAVRFNENSVRAMGRSAR 728
+ + G + ++ ++ L+ +T G D+M+ +D+G +R N ++ GR+
Sbjct: 726 YPTKGRGGKGMQTAKITEKNGLLAGLMTVQGDEDLMIITDTGVMIRTNLANISQTGRATM 785
Query: 729 GVIGMRLEKKQKVIAL-LVSNNQKQSVLTATE 759
GV MRL++ +++ V+ +K+ V T E
Sbjct: 786 GVKVMRLDQDAQIVTFTTVAVAEKEEVGTENE 817
>sp|D8K235|GYRA_DEHLB DNA gyrase subunit A OS=Dehalogenimonas lykanthroporepellens
(strain ATCC BAA-1523 / JCM 15061 / BL-DC-9) GN=gyrA
PE=3 SV=1
Length = 814
Score = 742 bits (1915), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/832 (44%), Positives = 541/832 (65%), Gaps = 53/832 (6%)
Query: 13 LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE 72
+E+EM SY+DYAMSVIV RALPDVRDGLKPVHRR+L+AM ++ +N + K AR+VGE
Sbjct: 11 IEDEMKNSYMDYAMSVIVSRALPDVRDGLKPVHRRILYAMSDLGMHYNTSYKKSARIVGE 70
Query: 73 TMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISN 132
+GKYHPHGD S+YDA+VRMAQ+FSLR LVDGQGNFGS+DGD AAMRYTE RL +++
Sbjct: 71 VLGKYHPHGDSSVYDAMVRMAQNFSLRYMLVDGQGNFGSVDGDPPAAMRYTEARLTRLAG 130
Query: 133 ELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVID 192
ELL+D+DK+T++F+ N+D KEP+VLP+R+P LL+NG+SGIAVGMATNIPPHNLTE+ D
Sbjct: 131 ELLVDIDKDTVEFMPNFDDSLKEPTVLPSRLPVLLMNGASGIAVGMATNIPPHNLTELCD 190
Query: 193 GVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFN 252
+ Y++ NPEC + DL++ + PDFPT G+I G + Y TG G+V++RA+ H+ +
Sbjct: 191 AISYLIDNPECGLEDLMQFVKGPDFPTGGLILGRDGIKSAYATGHGKVVVRARAHVADVA 250
Query: 253 REN-RTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNE 311
R III ELPYQVNK L+++I+ L +E+K+ I+ +RDESD+ G+R+VIELKR+
Sbjct: 251 ETGARRQIIISELPYQVNKADLVKRIAMLSRERKINGIAEVRDESDRQGLRVVIELKRDG 310
Query: 312 IPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELR 371
P+ +LN LYK T LQ +F +NMLALVN +P +LNLKE L +++ R+E+I RR+ FEL+
Sbjct: 311 EPQQILNNLYKHTNLQTSFFVNMLALVNNRPVVLNLKEALNHYVAFRQEIITRRSKFELK 370
Query: 372 KAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNY 431
AR AHILEGL IAL N+D I +IR A+ +++
Sbjct: 371 AARARAHILEGLKIALDNLDAIINLIRHAENADTARRELMSR------------------ 412
Query: 432 NTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTD 491
++LS +QAQ IL + L+RL N+E++KI+ +Y +++K++ L D
Sbjct: 413 -----------------FELSQLQAQAILDLQLRRLANLERQKILGEYADILKQISYLED 455
Query: 492 ILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNA-INPSTEDLIASQDMVITLSN 550
+L+N ++++ ++ D+L +K +YG + RR+EI I EDLI Q MV+TL+
Sbjct: 456 LLANPRKVLSLVKDDLAEVKARYG----DARRTEIQSQGVIEFREEDLIPHQSMVVTLTE 511
Query: 551 LGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVW 610
G+IK P YR Q R GRGK + T++ D + + +A+THD +L F+N G+++ +K
Sbjct: 512 RGFIKRVPTEVYRLQHRAGRGKSIIKTREADSVRFIMVADTHDSVLLFTNRGKIFSIKCH 571
Query: 611 QIPQG-SRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLL 669
+IP R ++G IIN+ L E+IT ++ +S F + + M+TS G K+T L
Sbjct: 572 EIPCDLLRTAKGIAIINLVPLAENERITSMIAVSR----FDEETSLIMATSGGECKRTKL 627
Query: 670 SNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARG 729
S+F+ R SG++A++L D LIGA + +I+L + +G+++ F +R R++ G
Sbjct: 628 SDFAAVRSSGLLAMDLPKNDELIGAVIAGADENIILITHNGRSIHFPVADLRVSQRASGG 687
Query: 730 VIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKR 789
V G+ LE +V L V+ VL T GYGK T ++EY R G+++ K +
Sbjct: 688 VRGITLEGDDRVAGLDVA-RPGHFVLVVTTGGYGKLTAVEEYPLQRRAGSGVLTFKVVDK 746
Query: 790 NGKVVAATLVNRYHEIMLITTGGILIRTRVSE------IRKMGRSTQGVILI 835
GKV A +V+R H++M+ T G++IRT V I MGRSTQGVI+I
Sbjct: 747 TGKVAAGKVVDREHQVMIATAEGVVIRTPVGTEDQEKGIIVMGRSTQGVIVI 798
Score = 43.5 bits (101), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 49/228 (21%), Positives = 107/228 (46%), Gaps = 19/228 (8%)
Query: 649 FPKNNYVFMSTSLGIVKKTLLSNFSNPRKSG----IIAVNLSNEDFLIGAALTDGSYDIM 704
P + V T G +K+ + ++G II ++ I A T S ++
Sbjct: 500 IPHQSMVVTLTERGFIKRVPTEVYRLQHRAGRGKSIIKTREADSVRFIMVADTHDS--VL 557
Query: 705 LFSDSGKAVRFNENSVRA-MGRSARGVIGMRL---EKKQKVIALLVSN--NQKQSVLTAT 758
LF++ GK + + + R+A+G+ + L + +++ +++ + +++ S++ AT
Sbjct: 558 LFTNRGKIFSIKCHEIPCDLLRTAKGIAIINLVPLAENERITSMIAVSRFDEETSLIMAT 617
Query: 759 ENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTR 818
G KRT + ++ + G++++ K N +++ A + I+LIT G I
Sbjct: 618 SGGECKRTKLSDFAAVR--SSGLLAMDLPK-NDELIGAVIAGADENIILITHNGRSIHFP 674
Query: 819 VSEIRKMGRSTQGVILITVENKSKLCGVQRLCKITMIKKYIPVITIDG 866
V+++R R++ GV IT+E ++ G+ + ++ V+T G
Sbjct: 675 VADLRVSQRASGGVRGITLEGDDRVAGLD----VARPGHFVLVVTTGG 718
Score = 34.7 bits (78), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 43/208 (20%), Positives = 90/208 (43%), Gaps = 23/208 (11%)
Query: 545 VITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRL 604
+I ++ G K +S++ A + G AM D + IA + I+ ++ GR
Sbjct: 613 LIMATSGGECKRTKLSDFAAVRSSG--LLAMDLPKNDELIGAVIAGADENIILITHNGRS 670
Query: 605 YWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPK-NNYVFMSTSLGI 663
V + R S G + +L+ +++ + D + ++V + T+ G
Sbjct: 671 IHFPVADLRVSQRASGG---VRGITLEGDDRVAGL--------DVARPGHFVLVVTTGGY 719
Query: 664 VKKTLLSNFSNPRK--SGIIAVNLSNEDFLIGAA-LTDGSYDIMLFSDSGKAVRF----- 715
K T + + R+ SG++ + ++ + A + D + +M+ + G +R
Sbjct: 720 GKLTAVEEYPLQRRAGSGVLTFKVVDKTGKVAAGKVVDREHQVMIATAEGVVIRTPVGTE 779
Query: 716 -NENSVRAMGRSARGVIGMRLEKKQKVI 742
E + MGRS +GVI +R ++ +V+
Sbjct: 780 DQEKGIIVMGRSTQGVIVIRPDENDRVV 807
>sp|Q92IZ6|GYRA_RICCN DNA gyrase subunit A OS=Rickettsia conorii (strain ATCC VR-613 /
Malish 7) GN=gyrA PE=3 SV=1
Length = 905
Score = 736 bits (1901), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/898 (42%), Positives = 570/898 (63%), Gaps = 64/898 (7%)
Query: 2 NQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNR 61
++ + ++ + +E+EM SYLDYAMSVIV RA+PDVRDGLKPVHRR++++MHE N ++
Sbjct: 3 DKSSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHASK 62
Query: 62 PFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMR 121
P+ K AR+VG+ MGKYHPHGD +IYDALVRMAQ FSLR LVDGQGNFGS+DGD+AAAMR
Sbjct: 63 PYRKSARIVGDVMGKYHPHGDSAIYDALVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122
Query: 122 YTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181
YTE R+ K+S +L+ D+DKET+ F NYDG E+EPSVLP PNLL+NGS GIAVGMATN
Sbjct: 123 YTESRMAKVSYKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182
Query: 182 IPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVI 241
IPPHNL EVID + N + I DL++++ PDFPT +I G+S + Y TG+G +I
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242
Query: 242 IRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGM 301
+R + IE NR AIII E+PY VNK L+EKI+++VKEK++E IS+LRDES+K+G+
Sbjct: 243 MRGRAEIENIG-NNRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGV 301
Query: 302 RIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEV 361
RI IELK++ + E+VLN++Y TQLQ +FG+ MLAL +G PK++NLKE++ F+ R+ V
Sbjct: 302 RIFIELKKDVVAEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVV 361
Query: 362 IKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVS 421
I RTI+ L KAR+ AHIL GLTIA++NID I+II++++ AK +++ W ++
Sbjct: 362 ITNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNDSNAAKQELMARQWEALNIL 421
Query: 422 KIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYEN 481
++ +++ + L +++QA+ IL+M LQRLT ME+ K+ +N
Sbjct: 422 PLVKL----------VDDKAMLNEQGKCNFTEVQAKAILEMRLQRLTAMEKNKLEEDLKN 471
Query: 482 VIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIAS 541
+I ++ + +IL + R++EI+ +EL +K ++ + R + I + EDLI
Sbjct: 472 LITEITEYLNILGSRTRLLEILKEELIKVKEEFATP----RLTSIEFGEFDQDIEDLIQR 527
Query: 542 QDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNY 601
++MV+T++ GYIK P+S YRAQKRGG+G+ + +DED Q+F+ +TH +L FSN
Sbjct: 528 EEMVVTVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNI 587
Query: 602 GRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSL 661
G++Y LK++++P + +G+P++N+ LK E IT I+PL N+ + N +F +T+
Sbjct: 588 GQVYSLKLYKLPLSNPQGKGRPMVNILPLKANEHITNIMPLPENQDERDNLNIMF-ATAK 646
Query: 662 GIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVR 721
G ++++ L +F + +G IA+ L +D LI I+L + +GKA+RF S+R
Sbjct: 647 GNIRRSDLLDFKKLQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLR 706
Query: 722 AM-GRSARGVIGMRLEKKQKVIALLV---------------------------------- 746
+ R++ GV GM+L K+ VI++ V
Sbjct: 707 VIKSRTSDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLSVPWEQRLEIAKGEAFNPE 766
Query: 747 -------------SNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKV 793
N ++ +LT TENG+GKR+ Y +RG GII++ N + G V
Sbjct: 767 ELGVSLTAPAIVEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLV 826
Query: 794 VAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCK 851
V V E+MLIT G LIR ++ +R GR+T GVIL +++ K+ V + +
Sbjct: 827 VGVMPVKMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884
>sp|Q4UKM1|GYRA_RICFE DNA gyrase subunit A OS=Rickettsia felis (strain ATCC VR-1525 /
URRWXCal2) GN=gyrA PE=3 SV=1
Length = 906
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 383/898 (42%), Positives = 573/898 (63%), Gaps = 64/898 (7%)
Query: 2 NQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNR 61
+Q ++ + +E+EM SYLDYAMSVIV RA+PDVRDGLKPVHRR++++M+E N ++
Sbjct: 3 DQNFSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASK 62
Query: 62 PFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMR 121
P+ K AR+VG+ MGKYHPHGD +IYD+LVRMAQ FSLR LVDGQGNFGS+DGD+AAAMR
Sbjct: 63 PYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122
Query: 122 YTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181
YTE R+ K+S++L+ D+DKET+ F NYDG E+EPSVLP PNLL+NGS GIAVGMATN
Sbjct: 123 YTESRMAKVSHKLVEDIDKETVSFNPNYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182
Query: 182 IPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVI 241
IPPHNL EVID + N + I DL++++ PDFPT +I G+S + Y TG+G +I
Sbjct: 183 IPPHNLGEVIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242
Query: 242 IRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGM 301
+R + IE +R AIII E+PY VNK L+EKI+++VKEK++E IS+LRDES+K+G+
Sbjct: 243 MRGRAEIENIGN-SRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGV 301
Query: 302 RIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEV 361
RI IELK++ + E+VLN++Y TQLQ +FG+ MLAL +G PK++NLKE++ F+ R+ V
Sbjct: 302 RIFIELKKDVVVEVVLNQIYACTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVV 361
Query: 362 IKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVS 421
I RTI+ L KAR+ AHIL GLTIA++NID I+II++++ P AK +++ +W+ ++
Sbjct: 362 ITNRTIYLLNKARDRAHILLGLTIAVSNIDEIIRIIKASNNPNAAKQELMARSWDALNIL 421
Query: 422 KIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYEN 481
++ +++ + L +++QA+ IL+M LQRLT ME+ K+ +N
Sbjct: 422 PLVKL----------VDDKAMLNEQGKCSFTEVQAKAILEMRLQRLTAMEKNKLEEDLKN 471
Query: 482 VIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIAS 541
+ ++ + +IL + R++EI+ +EL +K ++ + R + I + EDLI
Sbjct: 472 LATEITEYLNILGSRTRLLEILKEELIKVKEEFATP----RLTSIEFGEFDQDIEDLIQR 527
Query: 542 QDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNY 601
++MV+T++ GYIK P+S YRAQKRGG+G+ + +DED Q+F+ +TH +L FSN
Sbjct: 528 EEMVVTVTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNI 587
Query: 602 GRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSL 661
G++Y LK++++P + +G+P++N+ LK E IT I+PL N+ ++ N +F +T+
Sbjct: 588 GQVYSLKLYKLPLSNPQGKGRPMVNILPLKENEHITNIMPLPENQDEWDNLNIMF-ATAK 646
Query: 662 GIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVR 721
G ++++ L +F + +G IA+ L +D LI I+L + +GKA+RF S+R
Sbjct: 647 GNIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLR 706
Query: 722 AM-GRSARGVIGMRLEKKQKVIALLV---------------------------------- 746
+ R++ GV GM+L K+ VI++ V
Sbjct: 707 VIKSRTSDGVRGMKLAKEDSVISMTVLKGISSTKEDRDAYLTVPWEKRLEIAKGEEFNLE 766
Query: 747 -------------SNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKV 793
N ++ +LT TENG+GKR+ Y +RG GII++ N + G V
Sbjct: 767 ELGVTLTADSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLV 826
Query: 794 VAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCK 851
V V E+MLIT G LIR ++ +R GR+T GVIL +++ K+ V + +
Sbjct: 827 VGVMPVKMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDGEKVVSVSLIAE 884
>sp|Q1RID9|GYRA_RICBR DNA gyrase subunit A OS=Rickettsia bellii (strain RML369-C) GN=gyrA
PE=3 SV=1
Length = 905
Score = 736 bits (1899), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 384/892 (43%), Positives = 567/892 (63%), Gaps = 64/892 (7%)
Query: 8 VISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCA 67
++ + +E+EM SYLDYAMSVIV RA+PDVRDGLKPVHRR++++MHE N NR + K A
Sbjct: 9 LVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMHEAGNHANRAYRKSA 68
Query: 68 RVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRL 127
R+VG+ MGKYHPHGD +IYD+LVRMAQ FSLR LVDGQGNFGS+DGD+AAAMRYTE R+
Sbjct: 69 RIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSLDGDAAAAMRYTESRM 128
Query: 128 NKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNL 187
K++++L+ D+DKET+ F NYDG E+EPSVLP+ PNLL+NGS GIAVGMATNIPPHNL
Sbjct: 129 AKVAHKLIEDIDKETVSFNPNYDGSEEEPSVLPSMFPNLLVNGSGGIAVGMATNIPPHNL 188
Query: 188 TEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTH 247
EVID + N + I DL++++ PDFPT+GII G++ + Y TG+G + IR +
Sbjct: 189 GEVIDACCLYVDNNDIEILDLLEVVKGPDFPTSGIILGVNGIKSAYLTGRGSIAIRGRAE 248
Query: 248 IEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIEL 307
IE R AIII E+PY VNK L+EKI+++VKEK++E IS+LRDES+K+G+RI IEL
Sbjct: 249 IENLGN-GRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGIRIYIEL 307
Query: 308 KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTI 367
K++ + E+VLN++Y TQLQ +FG+ MLAL +G PK++NLKE++ F+ R+ VI RTI
Sbjct: 308 KKDIVAEVVLNQIYSCTQLQTSFGVIMLALKDGLPKVMNLKEVIAAFVSFREVVITNRTI 367
Query: 368 FELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFN 427
+ L KAR+ AHIL GLTIA++NID I+II++ S P AK +++ +W+ ++ ++
Sbjct: 368 YLLNKARDKAHILLGLTIAVSNIDEIIRIIKAASDPNAAKQELMARSWDALNILPLVKL- 426
Query: 428 KKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVI 487
+++ + L ++ QA+ IL+M LQRLT ME+ K+ +N+ ++
Sbjct: 427 ---------VDDKAMLNEEGKCSFTEAQAKAILEMRLQRLTAMEKNKLEEDLKNLATEIT 477
Query: 488 DLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVIT 547
+ +IL + +R++EI+ +EL +K ++ + R + I + EDLI ++MV+T
Sbjct: 478 EYLNILGSRERLLEILKEELIKVKEEFATP----RLTSIEFGEFDQDIEDLIQREEMVVT 533
Query: 548 LSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWL 607
++ GYIK P+S YRAQKRGG+G+ + +DED Q+F+ +TH +L FSN G++Y L
Sbjct: 534 VTLGGYIKRVPLSSYRAQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSNIGQVYSL 593
Query: 608 KVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKT 667
K++++P + +G+P++N+ LK E IT I+PL N+ ++ N +F +T+ G ++++
Sbjct: 594 KLYKLPLSNPQGKGRPMVNILPLKGDEHITNIMPLPENQDEWDNLNIMF-ATAKGNIRRS 652
Query: 668 LLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAM-GRS 726
L +F + +G IA+ L +D LI I+L + SGKA+RF S+R + R+
Sbjct: 653 DLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKSGKALRFPVESLRVIKSRT 712
Query: 727 ARGVIGMRLEKKQKVIALLV---------------------------------------- 746
+ GV GMRL + VI++ V
Sbjct: 713 SDGVRGMRLAEDDSVISMTVLKGIKATREERDAYLSVSWEKRLEIAKGEEFNSEELGVDL 772
Query: 747 -------SNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLV 799
N ++ +LT TENG+GKR+ Y +RG GII++ N + G VV V
Sbjct: 773 TAESILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLVVGVMPV 832
Query: 800 NRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCK 851
E+MLIT G LIR ++ +R GR+T GV L +++ K+ + +
Sbjct: 833 KMDDELMLITNSGKLIRCKLETVRITGRNTSGVTLFRLDDGEKVVSASLIAE 884
>sp|P0DG03|GYRA_STRPQ DNA gyrase subunit A OS=Streptococcus pyogenes serotype M3 (strain
SSI-1) GN=gyrA PE=3 SV=1
Length = 828
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/841 (45%), Positives = 552/841 (65%), Gaps = 47/841 (5%)
Query: 6 KEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVK 65
+ +I + L EM S++DYAMSVIV RALPDVRDGLKPVHRR+L+ M+E+ ++P K
Sbjct: 4 RNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKK 63
Query: 66 CARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTEC 125
AR+ G+ MGKYHPHGD SIY+A+VRMAQ +S R LVDG GNFGS+DGD AAA RYTE
Sbjct: 64 SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEA 123
Query: 126 RLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185
R++KI+ ELL D++K T++F NYDG E+EP VLP R PNLL+NG++GIAVGMATNIPPH
Sbjct: 124 RMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPH 183
Query: 186 NLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAK 245
NL E ID V V+ +P+C+ +L+++IP PDFPT ++ G S +H Y TGKG +++R++
Sbjct: 184 NLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLRSR 243
Query: 246 THIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVI 305
T IE + R I++ E PY VNK + E I +L +EK+LE I+ +RDES + G+R VI
Sbjct: 244 TEIET-TQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFVI 302
Query: 306 ELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRR 365
E++R ++LN L+K T LQ F NMLA+ NG PK+L+L++I+ +I H+KEVI RR
Sbjct: 303 EIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIRR 362
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
T F+ KA AHILEGL IAL ++D I IIR++ T A+ +++
Sbjct: 363 TRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR------------ 410
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKK 485
+ LS+ Q+Q IL M L+RLT +E+ KI ++Y++++
Sbjct: 411 -----------------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLAL 447
Query: 486 VIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAI-NPSTEDLIASQDM 544
+ DL+DIL+ +RII II +E++ IK KY N RR+E+++ + + EDLI +D+
Sbjct: 448 IADLSDILAKPERIITIIKEEMDEIKRKYA----NPRRTELMVGEVLSLEDEDLIEEEDV 503
Query: 545 VITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRL 604
+ITLSN GYIK E+RAQKRGGRG + ++D++ +L +THD +L F+N+GR+
Sbjct: 504 LITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRV 563
Query: 605 YWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIV 664
Y LK ++IP+ R ++G PI+N+ L++ E I I+ N +++ F +T GIV
Sbjct: 564 YRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTII---NARKEETAGKSFFFTTKQGIV 620
Query: 665 KKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMG 724
K+T +S F+N R++G+ A+ L D LI LT G DI++ + SG +VRFNE S+R MG
Sbjct: 621 KRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMG 680
Query: 725 RSARGVIGMRLEKKQKVI-ALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIIS 783
RSA GV G++L + +V+ A + +NQ+ VL TENG+GKRT +Y RG KGI +
Sbjct: 681 RSATGVRGVKLREDDRVVGASRIQDNQE--VLVITENGFGKRTSATDYPTKGRGGKGIKT 738
Query: 784 IKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKL 843
+NG++ V+ +IM+IT G++IRT V+ I + GR+T GV ++ ++ +K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKI 798
Query: 844 C 844
Sbjct: 799 V 799
Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)
Query: 525 EIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWIN 584
E I IN E+ A + T + G +K +SE+ ++ G +A+ K+ D +
Sbjct: 593 ETIQTIINARKEE-TAGKSFFFT-TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLI 648
Query: 585 QLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSN 644
+ + + D I+ ++ G I R++ G + L+ +++ + +
Sbjct: 649 NVLLTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATG---VRGVKLREDDRVVGASRIQD 705
Query: 645 NKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSG--IIAVNLSNEDF-LIGAALTDGSY 701
N+ V + T G K+T +++ + G I N++ ++ L G DG+
Sbjct: 706 NQE-------VLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTE 758
Query: 702 DIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSV 754
DIM+ ++ G +R N ++ GR+ GV M+L+ K++ + + S+
Sbjct: 759 DIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPEDSSI 811
>sp|P0DG02|GYRA_STRP3 DNA gyrase subunit A OS=Streptococcus pyogenes serotype M3 (strain
ATCC BAA-595 / MGAS315) GN=gyrA PE=3 SV=1
Length = 828
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/841 (45%), Positives = 552/841 (65%), Gaps = 47/841 (5%)
Query: 6 KEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVK 65
+ +I + L EM S++DYAMSVIV RALPDVRDGLKPVHRR+L+ M+E+ ++P K
Sbjct: 4 RNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKK 63
Query: 66 CARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTEC 125
AR+ G+ MGKYHPHGD SIY+A+VRMAQ +S R LVDG GNFGS+DGD AAA RYTE
Sbjct: 64 SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEA 123
Query: 126 RLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185
R++KI+ ELL D++K T++F NYDG E+EP VLP R PNLL+NG++GIAVGMATNIPPH
Sbjct: 124 RMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPH 183
Query: 186 NLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAK 245
NL E ID V V+ +P+C+ +L+++IP PDFPT ++ G S +H Y TGKG +++R++
Sbjct: 184 NLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLRSR 243
Query: 246 THIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVI 305
T IE + R I++ E PY VNK + E I +L +EK+LE I+ +RDES + G+R VI
Sbjct: 244 TEIET-TQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFVI 302
Query: 306 ELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRR 365
E++R ++LN L+K T LQ F NMLA+ NG PK+L+L++I+ +I H+KEVI RR
Sbjct: 303 EIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIRR 362
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
T F+ KA AHILEGL IAL ++D I IIR++ T A+ +++
Sbjct: 363 TRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR------------ 410
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKK 485
+ LS+ Q+Q IL M L+RLT +E+ KI ++Y++++
Sbjct: 411 -----------------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLAL 447
Query: 486 VIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAI-NPSTEDLIASQDM 544
+ DL+DIL+ +RII II +E++ IK KY N RR+E+++ + + EDLI +D+
Sbjct: 448 IADLSDILAKPERIITIIKEEMDEIKRKYA----NPRRTELMVGEVLSLEDEDLIEEEDV 503
Query: 545 VITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRL 604
+ITLSN GYIK E+RAQKRGGRG + ++D++ +L +THD +L F+N+GR+
Sbjct: 504 LITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRV 563
Query: 605 YWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIV 664
Y LK ++IP+ R ++G PI+N+ L++ E I I+ N +++ F +T GIV
Sbjct: 564 YRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTII---NARKEETAGKSFFFTTKQGIV 620
Query: 665 KKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMG 724
K+T +S F+N R++G+ A+ L D LI LT G DI++ + SG +VRFNE S+R MG
Sbjct: 621 KRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMG 680
Query: 725 RSARGVIGMRLEKKQKVI-ALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIIS 783
RSA GV G++L + +V+ A + +NQ+ VL TENG+GKRT +Y RG KGI +
Sbjct: 681 RSATGVRGVKLREDDRVVGASRIQDNQE--VLVITENGFGKRTSATDYPTKGRGGKGIKT 738
Query: 784 IKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKL 843
+NG++ V+ +IM+IT G++IRT V+ I + GR+T GV ++ ++ +K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKI 798
Query: 844 C 844
Sbjct: 799 V 799
Score = 43.1 bits (100), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)
Query: 525 EIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWIN 584
E I IN E+ A + T + G +K +SE+ ++ G +A+ K+ D +
Sbjct: 593 ETIQTIINARKEE-TAGKSFFFT-TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLI 648
Query: 585 QLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSN 644
+ + + D I+ ++ G I R++ G + L+ +++ + +
Sbjct: 649 NVLLTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATG---VRGVKLREDDRVVGASRIQD 705
Query: 645 NKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSG--IIAVNLSNEDF-LIGAALTDGSY 701
N+ V + T G K+T +++ + G I N++ ++ L G DG+
Sbjct: 706 NQE-------VLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTE 758
Query: 702 DIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSV 754
DIM+ ++ G +R N ++ GR+ GV M+L+ K++ + + S+
Sbjct: 759 DIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPEDSSI 811
>sp|Q9L7Q5|GYRA_STRP1 DNA gyrase subunit A OS=Streptococcus pyogenes serotype M1 GN=gyrA
PE=3 SV=1
Length = 828
Score = 729 bits (1882), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/841 (45%), Positives = 552/841 (65%), Gaps = 47/841 (5%)
Query: 6 KEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVK 65
+ +I + L EM S++DYAMSVIV RALPDVRDGLKPVHRR+L+ M+E+ ++P K
Sbjct: 4 RNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKK 63
Query: 66 CARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTEC 125
AR+ G+ MGKYHPHGD SIY+A+VRMAQ +S R LVDG GNFGS+DGD AAA RYTE
Sbjct: 64 SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEA 123
Query: 126 RLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185
R++KI+ ELL D++K T++F NYDG E+EP VLP R PNLL+NG++GIAVGMATNIPPH
Sbjct: 124 RMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPH 183
Query: 186 NLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAK 245
NL E ID V V+ +P+C+ +L+++IP PDFPT ++ G S +H Y TGKG +++R++
Sbjct: 184 NLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLRSR 243
Query: 246 THIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVI 305
T IE + R I++ E PY VNK + E I +L +EK+LE I+ +RDES + G+R VI
Sbjct: 244 TEIET-TQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFVI 302
Query: 306 ELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRR 365
E++R ++LN L+K T LQ F NMLA+ NG PK+L+L++I+ +I H+KEVI RR
Sbjct: 303 EIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIRR 362
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
T F+ KA AHILEGL IAL ++D I IIR++ T A+ +++
Sbjct: 363 TRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR------------ 410
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKK 485
+ LS+ Q+Q IL M L+RLT +E+ KI ++Y++++
Sbjct: 411 -----------------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLAL 447
Query: 486 VIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAI-NPSTEDLIASQDM 544
+ DL+DIL+ +RII II +E++ IK KY N RR+E+++ + + EDLI +D+
Sbjct: 448 IADLSDILAKPERIITIIKEEMDEIKRKYA----NPRRTELMVGEVLSLEDEDLIEEEDV 503
Query: 545 VITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRL 604
+ITLSN GYIK E+RAQKRGGRG + ++D++ +L +THD +L F+N+GR+
Sbjct: 504 LITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNNDDFVRELISTSTHDTLLFFTNFGRV 563
Query: 605 YWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIV 664
Y LK ++IP+ R ++G PI+N+ L++ E I I+ N +++ F +T GIV
Sbjct: 564 YRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTII---NARKEETAGKSFFFTTKQGIV 620
Query: 665 KKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMG 724
K+T +S F+N R++G+ A+ L D LI LT G DI++ + SG +VRFNE S+R MG
Sbjct: 621 KRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMG 680
Query: 725 RSARGVIGMRLEKKQKVI-ALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIIS 783
RSA GV G++L + +V+ A + +NQ+ VL TENG+GKRT +Y RG KGI +
Sbjct: 681 RSATGVRGVKLREDDRVVGASRIQDNQE--VLVITENGFGKRTSATDYPTKGRGGKGIKT 738
Query: 784 IKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKL 843
+NG++ V+ +IM+IT G++IRT V+ I + GR+T GV ++ ++ +K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKI 798
Query: 844 C 844
Sbjct: 799 V 799
Score = 43.1 bits (100), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)
Query: 525 EIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWIN 584
E I IN E+ A + T + G +K +SE+ ++ G +A+ K+ D +
Sbjct: 593 ETIQTIINARKEE-TAGKSFFFT-TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLI 648
Query: 585 QLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSN 644
+ + + D I+ ++ G I R++ G + L+ +++ + +
Sbjct: 649 NVLLTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATG---VRGVKLREDDRVVGASRIQD 705
Query: 645 NKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSG--IIAVNLSNEDF-LIGAALTDGSY 701
N+ V + T G K+T +++ + G I N++ ++ L G DG+
Sbjct: 706 NQE-------VLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTE 758
Query: 702 DIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSV 754
DIM+ ++ G +R N ++ GR+ GV M+L+ K++ + + S+
Sbjct: 759 DIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPEDSSI 811
>sp|Q5XC58|GYRA_STRP6 DNA gyrase subunit A OS=Streptococcus pyogenes serotype M6 (strain
ATCC BAA-946 / MGAS10394) GN=gyrA PE=3 SV=1
Length = 828
Score = 729 bits (1881), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 381/841 (45%), Positives = 552/841 (65%), Gaps = 47/841 (5%)
Query: 6 KEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVK 65
+ +I + L EM S++DYAMSVIV RALPDVRDGLKPVHRR+L+ M+E+ ++P K
Sbjct: 4 RNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKK 63
Query: 66 CARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTEC 125
AR+ G+ MGKYHPHGD SIY+A+VRMAQ +S R LVDG GNFGS+DGD AAA RYTE
Sbjct: 64 SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEA 123
Query: 126 RLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185
R++KI+ ELL D++K T++F NYDG E+EP VLP R PNLL+NG++GIAVGMATNIPPH
Sbjct: 124 RMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPH 183
Query: 186 NLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAK 245
NL E ID V V+ +P+C+ +L+++IP PDFPT ++ G S +H Y TGKG +++R++
Sbjct: 184 NLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLRSR 243
Query: 246 THIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVI 305
T IE + R I++ E PY VNK + E I +L +EK+LE I+ +RDES + G+R VI
Sbjct: 244 TEIET-TQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFVI 302
Query: 306 ELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRR 365
E++R ++LN L+K T LQ F NMLA+ NG PK+L+L++I+ +I H+KEVI RR
Sbjct: 303 EIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISHQKEVIIRR 362
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
T F+ KA AHILEGL IAL ++D I IIR++ T A+ +++
Sbjct: 363 TRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR------------ 410
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKK 485
+ LS+ Q+Q IL M L+RLT +E+ KI ++Y++++
Sbjct: 411 -----------------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLAL 447
Query: 486 VIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAI-NPSTEDLIASQDM 544
+ DL+DIL+ +RII II +E++ IK KY N RR+E+++ + + EDLI +D+
Sbjct: 448 IADLSDILAKPERIITIIKEEMDEIKRKYA----NPRRTELMVGEVLSLEDEDLIEEEDV 503
Query: 545 VITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRL 604
+ITLSN GYIK E+RAQKRGGRG + ++D++ +L +THD +L F+N+GR+
Sbjct: 504 LITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRV 563
Query: 605 YWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIV 664
Y LK ++IP+ R ++G PI+N+ L++ E I I+ N +++ F +T GIV
Sbjct: 564 YRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTII---NARKEETAGKSFFFTTKQGIV 620
Query: 665 KKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMG 724
K+T +S F+N R++G+ A+ L D LI LT G DI++ + SG +VRFNE S+R MG
Sbjct: 621 KRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMG 680
Query: 725 RSARGVIGMRLEKKQKVI-ALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIIS 783
RSA GV G++L + +V+ A + +NQ+ VL TENG+GKRT +Y RG KGI +
Sbjct: 681 RSATGVRGVKLREDDRVVGASRIRDNQE--VLVITENGFGKRTSATDYPTKGRGGKGIKT 738
Query: 784 IKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKL 843
+NG++ V+ +IM+IT G++IRT V+ I + GR+T GV ++ ++ +K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKI 798
Query: 844 C 844
Sbjct: 799 V 799
Score = 43.1 bits (100), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)
Query: 525 EIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWIN 584
E I IN E+ A + T + G +K +SE+ ++ G +A+ K+ D +
Sbjct: 593 ETIQTIINARKEE-TAGKSFFFT-TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLI 648
Query: 585 QLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSN 644
+ + + D I+ ++ G I R++ G + L+ +++ + +
Sbjct: 649 NVLLTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATG---VRGVKLREDDRVVGASRIRD 705
Query: 645 NKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSG--IIAVNLSNEDF-LIGAALTDGSY 701
N+ V + T G K+T +++ + G I N++ ++ L G DG+
Sbjct: 706 NQE-------VLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTE 758
Query: 702 DIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSV 754
DIM+ ++ G +R N ++ GR+ GV M+L+ K++ + + S+
Sbjct: 759 DIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPEDSSI 811
>sp|Q1MQ89|GYRA_LAWIP DNA gyrase subunit A OS=Lawsonia intracellularis (strain
PHE/MN1-00) GN=gyrA PE=3 SV=1
Length = 820
Score = 728 bits (1880), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 377/838 (44%), Positives = 547/838 (65%), Gaps = 47/838 (5%)
Query: 11 ILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVV 70
I +E+EM KSYL+Y++SVI+GRA+PDVRDGLKPVHRR+LFA E+ N + RP KCAR+V
Sbjct: 8 ISIEQEMRKSYLEYSLSVIIGRAIPDVRDGLKPVHRRILFAQQELGNSYTRPPKKCARIV 67
Query: 71 GETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKI 130
G+ +GKYHPHGD ++YDALVRMAQ FS+R L +GQGNFGSIDGD+ AAMRYTE R++++
Sbjct: 68 GDVIGKYHPHGDSAVYDALVRMAQDFSMRDPLEEGQGNFGSIDGDAPAAMRYTEVRMSRL 127
Query: 131 SNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEV 190
++E L D+DKET+DF NYD +EP VLPT++PNLL+NGSSGIAVGMATNIPPHNL E+
Sbjct: 128 ASEFLSDIDKETVDFRPNYDNSLEEPIVLPTKVPNLLLNGSSGIAVGMATNIPPHNLGEL 187
Query: 191 IDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEE 250
+ +L ++ +P+ I++L+ II PDFPT G IY ++D Y G+G V +R K IEE
Sbjct: 188 CNALLKIIDDPDVPIDNLLNIIHGPDFPTGGFIYVGQGLYDAYTKGRGTVKVRGKVEIEE 247
Query: 251 FNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRN 310
++ +I+I E+P+ +NK SL+EKI+ LV E+K++ I++LRDESD+ G+R+VIELK+
Sbjct: 248 -RKKGAQSIVIREIPFGLNKSSLVEKIAILVNERKIDGIADLRDESDRKGIRVVIELKKG 306
Query: 311 EIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFEL 370
IPEI++N LYK T L+ +FG+NMLA+V+ +P+LL +K L YF+ HR+EVI RRT FEL
Sbjct: 307 VIPEIIINALYKFTPLETSFGINMLAVVDNRPQLLTIKSALTYFLDHRREVIVRRTRFEL 366
Query: 371 RKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKN 430
KA HIL GL AL +ID + +IRS+STP EAK ++IE
Sbjct: 367 NKAEARLHILIGLIHALDHIDEVVNLIRSSSTPAEAKIRLIER----------------- 409
Query: 431 YNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLT 490
+ LS+IQAQ IL M LQRLT +E++K+ + + K+
Sbjct: 410 ------------------FSLSEIQAQSILDMRLQRLTGLEREKLEEEMHELQTKIAWYE 451
Query: 491 DILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAI-NPSTEDLIASQDMVITLS 549
IL ++K + +I DE+ IK Y + RR+E+I + N EDLI D+VITLS
Sbjct: 452 SILGDTKILWGVIRDEVTGIKEMYTTP----RRTEVIRETLTNIEIEDLIPDDDVVITLS 507
Query: 550 NLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKV 609
GYIK ++ Y+ Q+RGG+G + T ++D++ + H ++L F+N GR++ LKV
Sbjct: 508 RRGYIKRTNLAIYQQQRRGGKGVAGLHTSEDDFVQEFITTTNHQFLLLFTNKGRMHQLKV 567
Query: 610 WQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLL 669
Q+P+GSR ++G I N+ L+ +E +T IL + R+F N + +T G+VK++
Sbjct: 568 HQVPEGSRTAKGTHIANIVPLEKEEWVTTILTV----REFSDNKFFLFATRKGMVKRSSA 623
Query: 670 SNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARG 729
S ++ R++G++AV L +D LI + I+L + G A+RF+ VR MGR A G
Sbjct: 624 SYYARSRRTGLLAVGLREDDELIMVKEVTNNDFIVLATAEGFAIRFSCEDVRNMGRGAAG 683
Query: 730 VIGMRLEKKQKVIALLVSNNQKQ--SVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTN 787
V G+ L V+A L+ ++ +++T + GYGKRT I Y RG KGII+ K
Sbjct: 684 VKGIALRPGDSVVACLILQEKQDTPAIMTVSNLGYGKRTSIDLYRVQTRGGKGIINFKVT 743
Query: 788 KRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCG 845
++ G V+ A V+ + ++L+T+ +IR V E+R GR+T GV L+ +++ + + G
Sbjct: 744 QKTGLVIGAKPVSDDNALVLLTSTNKIIRMSVDEVRSAGRATMGVRLVKLDDGAYVVG 801
>sp|P41080|GYRA_RICPR DNA gyrase subunit A OS=Rickettsia prowazekii (strain Madrid E)
GN=gyrA PE=3 SV=1
Length = 905
Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/894 (42%), Positives = 569/894 (63%), Gaps = 64/894 (7%)
Query: 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWN 60
+++++ ++ + +E+EM SYLDYAMSVIV RA+PDVRDGLKPVHRR++++M+E N +
Sbjct: 2 IDKYSSNLVPVNIEDEMKVSYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHAS 61
Query: 61 RPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAM 120
+P+ K AR+VG+ MGKYHPHGD +IYD+LVRMAQ FSLR LVDGQGNFGS+DGD+AAAM
Sbjct: 62 KPYRKSARIVGDVMGKYHPHGDSAIYDSLVRMAQDFSLRLPLVDGQGNFGSMDGDAAAAM 121
Query: 121 RYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMAT 180
RYTE R+ K++++L+ D+DK T+ F NYDG E+EPSVLP PNLL+NGS GIAVGMAT
Sbjct: 122 RYTESRMAKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMAT 181
Query: 181 NIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240
NIPPHNL E+ID + N + I DL++++ PDFPT +I G+S + Y TG+G +
Sbjct: 182 NIPPHNLGEIIDACCLYIDNHDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSI 241
Query: 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSG 300
I+R K IE +R AIII E+PY VNK L+EKI+++VKEK++E IS+LRDES+K+G
Sbjct: 242 IMRGKAEIENVGN-SRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNG 300
Query: 301 MRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKE 360
+RI IELK++ + E+VLN++Y TQLQ FG+ MLAL +G PK++NLKE++ F+ R+
Sbjct: 301 IRIFIELKKDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREV 360
Query: 361 VIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDV 420
VI RTI+ L KAR+ AHIL GLTIA++NID I II++++ AK +++ W + D+
Sbjct: 361 VITNRTIYLLNKARDRAHILLGLTIAISNIDEIIYIIKASNDTNLAKQELMARQWEVLDI 420
Query: 421 SKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYE 480
+I +++ L +++QA+ IL+M LQRLT ME++K+ +
Sbjct: 421 LPLIKL----------VDDKVILNERGTLSFTEVQAKAILEMKLQRLTAMEKEKLEQDLK 470
Query: 481 NVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIA 540
++ + + +IL++ R++EI+ +EL +K ++ S R + I + EDLI
Sbjct: 471 HLATDIAEYLNILASRTRLLEILKEELIKVKEEFASP----RLTSIEFGEFDQDIEDLIQ 526
Query: 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSN 600
++MV+T++ GYIK P+S YR+QKRGG+G+ + +DED Q+F+ +TH +L FSN
Sbjct: 527 REEMVVTVTLGGYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITTQVFVGSTHTPMLFFSN 586
Query: 601 YGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTS 660
G++Y LK++++P + +G+P++N+ SL+ E IT I+PL N+ ++ N +F +T+
Sbjct: 587 IGKVYSLKLYKLPLSNPQGKGRPMVNILSLQENEHITNIMPLPENQDEWDHLNIMF-ATA 645
Query: 661 LGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720
G ++++ L +F + +G IA+ L +D LI I+L + +GKA+RF S+
Sbjct: 646 KGNIRRSDLLDFKKIQSNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESL 705
Query: 721 RAM-GRSARGVIGMRLEKKQKVIALLV--------------------------------- 746
R + R + GV GM+L K+ VI++ V
Sbjct: 706 RIIKSRISDGVRGMKLAKEDSVISMTVLKGINSTKEDRDAYLTVPWEKRLEIAKGEEFNL 765
Query: 747 --------------SNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGK 792
N ++ +LT TENG+GKR+ Y +RG GII++ N + G
Sbjct: 766 EELGVNLNADSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGL 825
Query: 793 VVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGV 846
VV V E+MLIT G LIR ++ +R GR+T GVIL +++ K+ V
Sbjct: 826 VVGVMPVKMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSV 879
>sp|Q8P116|GYRA_STRP8 DNA gyrase subunit A OS=Streptococcus pyogenes serotype M18 (strain
MGAS8232) GN=gyrA PE=3 SV=1
Length = 828
Score = 726 bits (1874), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 380/841 (45%), Positives = 552/841 (65%), Gaps = 47/841 (5%)
Query: 6 KEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVK 65
+ +I + L EM S++DYAMSVIV RALPDVRDGLKPVHRR+L+ M+E+ ++P K
Sbjct: 4 RNLIDVNLTSEMKTSFIDYAMSVIVARALPDVRDGLKPVHRRILYGMNELGVTPDKPHKK 63
Query: 66 CARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTEC 125
AR+ G+ MGKYHPHGD SIY+A+VRMAQ +S R LVDG GNFGS+DGD AAA RYTE
Sbjct: 64 SARITGDVMGKYHPHGDSSIYEAMVRMAQWWSYRHMLVDGHGNFGSMDGDGAAAQRYTEA 123
Query: 126 RLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185
R++KI+ ELL D++K T++F NYDG E+EP VLP R PNLL+NG++GIAVGMATNIPPH
Sbjct: 124 RMSKIALELLRDINKNTVNFQDNYDGSEREPVVLPARFPNLLVNGATGIAVGMATNIPPH 183
Query: 186 NLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAK 245
NL E ID V V+ +P+C+ +L+++IP PDFPT ++ G S +H Y TGKG +++R++
Sbjct: 184 NLAESIDAVKMVMEHPDCTTRELMEVIPGPDFPTGALVMGRSGIHRAYDTGKGSIVLRSR 243
Query: 246 THIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVI 305
T IE + R I++ E PY VNK + E I +L +EK+LE I+ +RDES + G+R VI
Sbjct: 244 TEIET-TQTGRERIVVTEFPYGVNKTKVHEHIVRLAQEKRLEGITAVRDESSREGVRFVI 302
Query: 306 ELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRR 365
E++R ++LN L+K T LQ F NMLA+ NG PK+L+L++I+ +I ++KEVI RR
Sbjct: 303 EIRREASATVILNNLFKLTSLQTNFSFNMLAIENGVPKILSLRQIIDNYISYQKEVIIRR 362
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
T F+ KA AHILEGL IAL ++D I IIR++ T A+ +++
Sbjct: 363 TRFDKDKAEARAHILEGLLIALDHLDEVIAIIRNSETDVIAQTELMSR------------ 410
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKK 485
+ LS+ Q+Q IL M L+RLT +E+ KI ++Y++++
Sbjct: 411 -----------------------FDLSERQSQAILDMRLRRLTGLERDKIQSEYDDLLAL 447
Query: 486 VIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAI-NPSTEDLIASQDM 544
+ DL+DIL+ +RII II +E++ IK KY N RR+E+++ + + EDLI +D+
Sbjct: 448 IADLSDILAKPERIITIIKEEMDEIKRKYA----NPRRTELMVGEVLSLEDEDLIEEEDV 503
Query: 545 VITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRL 604
+ITLSN GYIK E+RAQKRGGRG + ++D++ +L +THD +L F+N+GR+
Sbjct: 504 LITLSNKGYIKRLAQDEFRAQKRGGRGVQGTGVNNDDFVRELVSTSTHDTLLFFTNFGRV 563
Query: 605 YWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIV 664
Y LK ++IP+ R ++G PI+N+ L++ E I I+ N +++ F +T GIV
Sbjct: 564 YRLKAYEIPEYGRTAKGLPIVNLLKLEDGETIQTII---NARKEETAGKSFFFTTKQGIV 620
Query: 665 KKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMG 724
K+T +S F+N R++G+ A+ L D LI LT G DI++ + SG +VRFNE S+R MG
Sbjct: 621 KRTEVSEFNNIRQNGLRALKLKEGDQLINVLLTSGQDDIIIGTHSGYSVRFNEASIRNMG 680
Query: 725 RSARGVIGMRLEKKQKVI-ALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIIS 783
RSA GV G++L + +V+ A + +NQ+ VL TENG+GKRT +Y RG KGI +
Sbjct: 681 RSATGVRGVKLREDDRVVGASRIRDNQE--VLVITENGFGKRTSATDYPTKGRGGKGIKT 738
Query: 784 IKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKL 843
+NG++ V+ +IM+IT G++IRT V+ I + GR+T GV ++ ++ +K+
Sbjct: 739 ANITPKNGQLAGLVTVDGTEDIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKI 798
Query: 844 C 844
Sbjct: 799 V 799
Score = 42.7 bits (99), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 49/233 (21%), Positives = 102/233 (43%), Gaps = 17/233 (7%)
Query: 525 EIILNAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWIN 584
E I IN E+ A + T + G +K +SE+ ++ G +A+ K+ D +
Sbjct: 593 ETIQTIINARKEE-TAGKSFFFT-TKQGIVKRTEVSEFNNIRQNG--LRALKLKEGDQLI 648
Query: 585 QLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSN 644
+ + + D I+ ++ G I R++ G + L+ +++ + +
Sbjct: 649 NVLLTSGQDDIIIGTHSGYSVRFNEASIRNMGRSATG---VRGVKLREDDRVVGASRIRD 705
Query: 645 NKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSG--IIAVNLSNEDF-LIGAALTDGSY 701
N+ V + T G K+T +++ + G I N++ ++ L G DG+
Sbjct: 706 NQE-------VLVITENGFGKRTSATDYPTKGRGGKGIKTANITPKNGQLAGLVTVDGTE 758
Query: 702 DIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSV 754
DIM+ ++ G +R N ++ GR+ GV M+L+ K++ + + S+
Sbjct: 759 DIMVITNKGVIIRTNVANISQTGRATLGVKIMKLDADAKIVTFTLVQPEDSSI 811
>sp|P48370|GYRA_HELPY DNA gyrase subunit A OS=Helicobacter pylori (strain ATCC 700392 /
26695) GN=gyrA PE=3 SV=2
Length = 827
Score = 723 bits (1867), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/837 (44%), Positives = 552/837 (65%), Gaps = 47/837 (5%)
Query: 6 KEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVK 65
K ++ + ++ + +SYL Y+MSVI+GRALPD RDGLKPVHRR+L+AMHE+ + K
Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69
Query: 66 CARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTEC 125
AR+VG+ +GKYHPHGD ++YDALVRMAQ FS+R LVDGQGNFGSIDGD+AAAMRYTE
Sbjct: 70 SARIVGDVIGKYHPHGDNAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129
Query: 126 RLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185
R+ K S E+L D+DK+TIDF+ NYD KEP +LP+R+PNLL+NG++GIAVGMAT+IPPH
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189
Query: 186 NLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAK 245
+ E+ID +++VL NP ++++++ + PDFPT GIIYG + + + Y TG+GRV +RAK
Sbjct: 190 RMDEIIDALVHVLENPNAGLDEILEFVKGPDFPTGGIIYGKAGIIEAYKTGRGRVKVRAK 249
Query: 246 THIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVI 305
H+E+ +N+ I++DE+P+Q NK L+E+IS L +EK++E IS +RDESD+ G+R+VI
Sbjct: 250 VHVEK--TKNKEIIVLDEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307
Query: 306 ELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRR 365
ELKR+ + EIVLN LYK T ++ TF + +LA+ N +PK+ L E+L+ F+ HRK +I RR
Sbjct: 308 ELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLHLFLNHRKTIIIRR 367
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
TIFEL KA+ AHILEG IAL NID +++I+++ +P+ AKN ++E
Sbjct: 368 TIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSQSPEAAKNALMER------------ 415
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKK 485
+ LS+IQ++ IL+M LQRLT +E+ KI +Y+N+++
Sbjct: 416 -----------------------FTLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLEL 452
Query: 486 VIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMV 545
+ DL IL + R+ ++ EL +K ++ S RR+EI + N EDLIA++ MV
Sbjct: 453 IDDLNGILKSEDRLNGVVKTELLEVKEQFSSP----RRTEIQESYENIDIEDLIANEPMV 508
Query: 546 ITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLY 605
+++S GY+K + Y Q RGG+GK + T ++D+I F+ANTHD +L +N G+LY
Sbjct: 509 VSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLY 568
Query: 606 WLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVK 665
LKV++IP+ SR + GK I+N+ SL EKI L + +DF + T G+VK
Sbjct: 569 HLKVYKIPEASRIAMGKAIVNLISLAPDEKIMATL----STKDFSDERSLAFFTKNGVVK 624
Query: 666 KTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTD-GSYDIMLFSDSGKAVRFNENSVRAMG 724
+T LS F + R GI A+ L D L+ A + D + +++ S G ++F VR +G
Sbjct: 625 RTNLSEFESNRSCGIRAIVLDEGDELVSAKVVDKNAKHLLIASHLGIFIKFPLEEVREIG 684
Query: 725 RSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISI 784
R+ RGVIG++L + V+ +V ++ +L+ +ENG GK+TL + Y +RG KG+I +
Sbjct: 685 RTTRGVIGIKLNENDFVVGAVVISDDGNKLLSVSENGLGKQTLAEAYRGQSRGGKGVIGM 744
Query: 785 KTNKRNGKVVAATLVNRYH-EIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENK 840
K ++ G +V V+ + ++M++T +IR + +IR+ GR+ GV LI +K
Sbjct: 745 KLTQKTGNLVGVISVDDENLDLMILTASAKMIRVSIKDIRETGRNASGVKLINTADK 801
Score = 53.1 bits (126), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 71/263 (26%), Positives = 129/263 (49%), Gaps = 37/263 (14%)
Query: 648 DFPKNNYVFMSTSL-GIVKKTLLSNFSNPRKSGIIAVNLSN-EDFLIGAALTDGSYDIML 705
D N + +S S G VK+ L + + G ++ S ED I ++DI+L
Sbjct: 500 DLIANEPMVVSMSYKGYVKRVDLKAYEKQNRGGKGKLSGSTYEDDFIENFFVANTHDILL 559
Query: 706 F-SDSG-----KAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNN--QKQSVLTA 757
F ++ G K + E S AMG++ +I L +K++A L + + ++S+
Sbjct: 560 FITNKGQLYHLKVYKIPEASRIAMGKAIVNLIS--LAPDEKIMATLSTKDFSDERSLAFF 617
Query: 758 TENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTG-GILIR 816
T+NG KRT + E+ + NR GI +I ++ + ++V+A +V++ + +LI + GI I+
Sbjct: 618 TKNGVVKRTNLSEF-ESNRSC-GIRAIVLDEGD-ELVSAKVVDKNAKHLLIASHLGIFIK 674
Query: 817 TRVSEIRKMGRSTQGVI-------------LITVENKSKLCGVQR--LCKITMIKKYIPV 861
+ E+R++GR+T+GVI ++ ++ +KL V L K T+ + Y
Sbjct: 675 FPLEEVREIGRTTRGVIGIKLNENDFVVGAVVISDDGNKLLSVSENGLGKQTLAEAY--- 731
Query: 862 ITIDGPTASGKGTVAQLVASKLG 884
G + GKG + + K G
Sbjct: 732 ---RGQSRGGKGVIGMKLTQKTG 751
>sp|Q9ZLD9|GYRA_HELPJ DNA gyrase subunit A OS=Helicobacter pylori (strain J99) GN=gyrA
PE=3 SV=1
Length = 828
Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/838 (44%), Positives = 552/838 (65%), Gaps = 48/838 (5%)
Query: 6 KEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVK 65
K ++ + ++ + +SYL Y+MSVI+GRALPD RDGLKPVHRR+L+AMHE+ + K
Sbjct: 10 KNIVEVGIDSSIEESYLAYSMSVIIGRALPDARDGLKPVHRRILYAMHELGLTSKVAYKK 69
Query: 66 CARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTEC 125
AR+VG+ +GKYHPHGD ++YDALVRMAQ FS+R LVDGQGNFGSIDGD+AAAMRYTE
Sbjct: 70 SARIVGDVIGKYHPHGDTAVYDALVRMAQDFSMRLELVDGQGNFGSIDGDNAAAMRYTEA 129
Query: 126 RLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPH 185
R+ K S E+L D+DK+TIDF+ NYD KEP +LP+R+PNLL+NG++GIAVGMAT+IPPH
Sbjct: 130 RMTKASEEILRDIDKDTIDFVPNYDDTLKEPDILPSRLPNLLVNGANGIAVGMATSIPPH 189
Query: 186 NLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAK 245
+ E+ID + +VL NP ++ +++ + PDFPT GIIYG + + + Y TG+GRV +RAK
Sbjct: 190 RIDEIIDALAHVLGNPNAELDKILEFVKGPDFPTGGIIYGKAGIVEAYKTGRGRVKVRAK 249
Query: 246 THIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVI 305
H+E+ +N+ I++ E+P+Q NK L+E+IS L +EK++E IS +RDESD+ G+R+VI
Sbjct: 250 VHVEK--TKNKEIIVLGEMPFQTNKAKLVEQISDLAREKQIEGISEVRDESDREGIRVVI 307
Query: 306 ELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRR 365
ELKR+ + EIVLN LYK T ++ TF + +LA+ N +PK+ L E+L F+ HRK +I RR
Sbjct: 308 ELKRDAMSEIVLNHLYKLTTMETTFSIILLAIYNKEPKIFTLLELLRLFLNHRKTIIIRR 367
Query: 366 TIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIG 425
TIFEL KA+ AHILEG IAL NID +++I+++ +P+ AKN +IE
Sbjct: 368 TIFELEKAKARAHILEGYLIALDNIDEIVRLIKTSPSPEAAKNALIER------------ 415
Query: 426 FNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKK 485
+ LS+IQ++ IL+M LQRLT +E+ KI +Y+N+++
Sbjct: 416 -----------------------FSLSEIQSKAILEMRLQRLTGLERDKIKEEYQNLLEL 452
Query: 486 VIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMV 545
+ DL IL + R+ E++ EL +K ++ S RR+EI + + TEDLIA++ MV
Sbjct: 453 IDDLNGILKSEDRLNEVVKTELLEVKEQFSSP----RRTEIQESYESIDTEDLIANEPMV 508
Query: 546 ITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLY 605
+++S GY+K + Y Q RGG+GK + T ++D+I F+ANTHD +L +N G+LY
Sbjct: 509 VSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANTHDILLFITNKGQLY 568
Query: 606 WLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVK 665
LKV++IP+ SR + GK I+N+ SL EKI L + +DF + T G+VK
Sbjct: 569 HLKVYKIPEASRIAMGKAIVNLISLAPNEKIMATL----STKDFSDERSLAFFTKNGVVK 624
Query: 666 KTLLSNFSNPRK-SGIIAVNLSNEDFLIGAALTD-GSYDIMLFSDSGKAVRFNENSVRAM 723
+T LS F R SGI A+ L D L+GA + D + +++ S G ++F VR +
Sbjct: 625 RTNLSEFGGNRSYSGIRAIVLDEGDELVGAKVVDKNAKHLLIASYLGMFIKFPLEDVREI 684
Query: 724 GRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIIS 783
GR+ RGV+G+RL + V+ +V ++ +L+ +ENG GK+TL + Y + +RG KG+I
Sbjct: 685 GRTTRGVMGIRLNENDFVVGAVVISDDSNKLLSVSENGLGKQTLAEAYREQSRGGKGVIG 744
Query: 784 IKTNKRNGKVVAATLVNRYH-EIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENK 840
+K ++ G +V+ V+ + +M++T +IR + +IR+ GR+ GV LI +K
Sbjct: 745 MKLTQKTGNLVSVISVDDENLNLMILTASAKMIRVSIKDIRETGRNASGVKLINTADK 802
Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 110/215 (51%), Gaps = 15/215 (6%)
Query: 643 SNNKRDFPKNNYVFMSTSL-GIVKKTLLSNFSNPRKSGIIAVNLSN-EDFLIGAALTDGS 700
S + D N + +S S G VK+ L + + G ++ S ED I +
Sbjct: 495 SIDTEDLIANEPMVVSMSYKGYVKRVDLKAYERQNRGGKGKLSGSTYEDDFIENFFVANT 554
Query: 701 YDIMLF-SDSG-----KAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNN--QKQ 752
+DI+LF ++ G K + E S AMG++ +I L +K++A L + + ++
Sbjct: 555 HDILLFITNKGQLYHLKVYKIPEASRIAMGKAIVNLIS--LAPNEKIMATLSTKDFSDER 612
Query: 753 SVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTG- 811
S+ T+NG KRT + E+ NR GI +I ++ + ++V A +V++ + +LI +
Sbjct: 613 SLAFFTKNGVVKRTNLSEFGG-NRSYSGIRAIVLDEGD-ELVGAKVVDKNAKHLLIASYL 670
Query: 812 GILIRTRVSEIRKMGRSTQGVILITVENKSKLCGV 846
G+ I+ + ++R++GR+T+GV+ I + + G
Sbjct: 671 GMFIKFPLEDVREIGRTTRGVMGIRLNENDFVVGA 705
>sp|Q03470|GYRA_CAMJE DNA gyrase subunit A OS=Campylobacter jejuni subsp. jejuni serotype
O:2 (strain NCTC 11168) GN=gyrA PE=3 SV=1
Length = 863
Score = 722 bits (1863), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/858 (44%), Positives = 555/858 (64%), Gaps = 82/858 (9%)
Query: 13 LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE 72
+E + SYLDY+MSVI+GRALPD RDGLKPVHRR+L+AM FVK AR+VG
Sbjct: 16 IENSIKSSYLDYSMSVIIGRALPDARDGLKPVHRRILYAMQNDEAKSRTDFVKSARIVGA 75
Query: 73 TMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISN 132
+G+YHPHGD ++YDALVRMAQ FS+R + GQGNFGSIDGDSAAAMRYTE +++K+S+
Sbjct: 76 VIGRYHPHGDTAVYDALVRMAQDFSMRYPSITGQGNFGSIDGDSAAAMRYTEAKMSKLSH 135
Query: 133 ELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVID 192
ELL D+DK+T+DF+ NYDG E EP VLP+R+PNLL+NGSSGIAVGMATNIPPH+L E+ID
Sbjct: 136 ELLKDIDKDTVDFVPNYDGSESEPDVLPSRVPNLLLNGSSGIAVGMATNIPPHSLNELID 195
Query: 193 GVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFN 252
G+LY+L N + S+ ++++ I PDFPT GIIYG + + Y TG+GRV +RAKTHIE+
Sbjct: 196 GLLYLLDNKDASLEEIMQFIKGPDFPTGGIIYGKKGIIEAYRTGRGRVKVRAKTHIEK-- 253
Query: 253 RENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEI 312
+ N+ I+IDELPYQ NK L+E+I++LVKE+++E IS +RDES+K G+R+VIELKR +
Sbjct: 254 KTNKDVIVIDELPYQTNKARLIEQIAELVKERQIEGISEVRDESNKEGIRVVIELKREAM 313
Query: 313 PEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRK 372
EIVLN L+K T +++TFG+ MLA+ N +PK+ +L E+L F+ HRK VI RRTIFEL+K
Sbjct: 314 SEIVLNNLFKSTTMESTFGVIMLAIHNKEPKIFSLLELLNLFLTHRKTVIIRRTIFELQK 373
Query: 373 AREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYN 432
AR AHILEGL IAL NID I +I+++S A++ ++
Sbjct: 374 ARARAHILEGLKIALDNIDEVIALIKNSSDNNTARDSLVAK------------------- 414
Query: 433 TISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDI 492
+ LS++QA IL M L RLT +E++KI N+ ++K++ L +I
Sbjct: 415 ----------------FGLSELQANAILDMKLGRLTGLEREKIENELAELMKEIARLEEI 458
Query: 493 LSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVITLSNLG 552
L + + +I DEL I++K+ R ++I + + EDLI +++MV+T+++ G
Sbjct: 459 LKSETLLENLIRDELKEIRSKFDVP----RITQIEDDYDDIDIEDLIPNENMVVTITHRG 514
Query: 553 YIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQI 612
YIK P +Y QKRGG+GK A+ T D+D+I F ANTHD ++ ++ G+LYWLKV++I
Sbjct: 515 YIKRVPSKQYEKQKRGGKGKLAVTTYDDDFIESFFTANTHDTLMFVTDRGQLYWLKVYKI 574
Query: 613 PQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNF 672
P+GSR ++GK ++N+ +L+ +EKI I+P + DF ++ + T GIVK+T LS +
Sbjct: 575 PEGSRTAKGKAVVNLINLQAEEKIMAIIPTT----DFDESKSLCFFTKNGIVKRTNLSEY 630
Query: 673 SNPRKSGIIAVNLSNEDFLIGAAL----------TDGSYDI------------------- 703
N R G+ A+NL D L+ A + T G ++
Sbjct: 631 QNIRSVGVRAINLDENDELVTAIIVQRDEDEIFATGGEENLENQEIENLDDENLENEESV 690
Query: 704 -----MLFS--DSGKAVRFNENSVRAMGRSARGVIGMRL-EKKQKVIALLVSNNQKQSVL 755
MLF+ G ++F VR +GR +RGV ++ EK +++ +V N +Q +L
Sbjct: 691 STQGKMLFAVTKKGMCIKFPLAKVREIGRVSRGVTAIKFKEKNDELVGAVVIENDEQEIL 750
Query: 756 TATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILI 815
+ + G GKRT EY +RG KG+I +K ++ +++ +V+ ++M +T+ G +I
Sbjct: 751 SISAKGIGKRTNAGEYRLQSRGGKGVICMKLTEKTKDLISVVIVDETMDLMALTSSGKMI 810
Query: 816 RTRVSEIRKMGRSTQGVI 833
R + IRK GR+T GVI
Sbjct: 811 RVDMQSIRKAGRNTSGVI 828
>sp|Q68XG2|GYRA_RICTY DNA gyrase subunit A OS=Rickettsia typhi (strain ATCC VR-144 /
Wilmington) GN=gyrA PE=3 SV=1
Length = 905
Score = 719 bits (1856), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 376/900 (41%), Positives = 568/900 (63%), Gaps = 64/900 (7%)
Query: 2 NQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNR 61
++++ ++ + +E+EM SYLDYAMSVIV RA+PDVRDGLKPVHRR++++M+E N ++
Sbjct: 3 DKYSSNLVPVNIEDEMKASYLDYAMSVIVSRAIPDVRDGLKPVHRRIIYSMYEAGNHASK 62
Query: 62 PFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMR 121
P+ K AR+VG+ MGKYHPHGD +IYD+LVRM Q FSLR LVDGQGNFGS+DGD+AAAMR
Sbjct: 63 PYRKSARIVGDVMGKYHPHGDSAIYDSLVRMTQDFSLRLPLVDGQGNFGSMDGDAAAAMR 122
Query: 122 YTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181
YTE R++K++++L+ D+DK T+ F NYDG E+EPSVLP PNLL+NGS GIAVGMATN
Sbjct: 123 YTESRMSKVAHKLVEDIDKGTVSFNINYDGSEEEPSVLPAMFPNLLVNGSGGIAVGMATN 182
Query: 182 IPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVI 241
IPPHNL E+ID + N + I DL++++ PDFPT +I G+S + Y TG+G +I
Sbjct: 183 IPPHNLGEIIDACCLYIDNNDIEILDLLEVVKGPDFPTGSMILGISGIRSAYLTGRGSII 242
Query: 242 IRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGM 301
+R K IE +R AIII E+PY VNK L+EKI+++VKEK++E IS+LRDES+K+G+
Sbjct: 243 MRGKAEIENIGN-SRQAIIITEIPYMVNKARLVEKIAEMVKEKRIEGISDLRDESNKNGV 301
Query: 302 RIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEV 361
RI IELK++ + E+VLN++Y TQLQ FG+ MLAL +G PK++NLKE++ F+ R+ V
Sbjct: 302 RIFIELKKDVVAEVVLNQIYACTQLQTNFGVIMLALKDGLPKVMNLKEVIAAFVSFREVV 361
Query: 362 IKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVS 421
I RTI+ L KAR+ AHIL GL IA++NID I II++++ AK ++++ W + D+
Sbjct: 362 ITNRTIYLLNKARDRAHILLGLAIAISNIDEIIYIIKASNDTNLAKQELMDRQWEVLDIL 421
Query: 422 KIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYEN 481
+I +++ L +++QA+ IL+M LQRLT ME+ K+ ++
Sbjct: 422 PLIKL----------VDDKVMLNERGKLSFTEVQAKAILEMKLQRLTAMEKNKLEQDLKH 471
Query: 482 VIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIAS 541
+ ++ + +IL + R++EI+ +EL +K ++ R + I + EDLI
Sbjct: 472 LATEIAEYLNILDSRTRLLEILKEELIKVKEEFAVP----RLTAIEFGEFDQDIEDLIQR 527
Query: 542 QDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNY 601
++MV+T++ GYIK P+S YR+QKRGG+G+ + +DED Q+F+ +TH +L FSN
Sbjct: 528 EEMVVTVTLGGYIKRVPLSSYRSQKRGGKGRSGLSMRDEDITMQVFVGSTHTPMLFFSNI 587
Query: 602 GRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSL 661
G++Y LK++++P + +G+P++N+ L+ E IT I+PL N+ ++ N +F +T+
Sbjct: 588 GKVYSLKLYKLPLSNPQGKGRPMVNILPLQENEHITNIMPLPENQDEWDHLNIMF-ATAK 646
Query: 662 GIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVR 721
G ++++ L +F + +G IA+ L +D LI I+L + +GKA+RF S+R
Sbjct: 647 GNIRRSDLLDFKKIQLNGKIAIRLDEDDKLIDVKPCKEDEHILLATKAGKALRFPVESLR 706
Query: 722 AM-GRSARGVIGMRLEKKQKVIALLV---------------------------------- 746
+ R + GV GM+L K+ VI++ V
Sbjct: 707 IIKSRISDGVRGMKLAKEDSVISMTVLKGINSTKEDRDAYLTVPWEKRLKIAKGEEFNLE 766
Query: 747 -------------SNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKV 793
N ++ +LT TENG+GKR+ Y +RG GII++ N + G V
Sbjct: 767 ALGVHLNADSILEMANSEEFILTVTENGFGKRSSAYGYRITDRGGSGIINMDINDKTGLV 826
Query: 794 VAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKIT 853
V V E+MLIT G LIR ++ +R GR+T GVIL +++ K+ V + + +
Sbjct: 827 VGVMPVKMDDELMLITNSGKLIRCKLESVRITGRNTSGVILFKLDDDEKVVSVSLIAETS 886
>sp|Q18GY3|GYRA_HALWD DNA gyrase subunit A OS=Haloquadratum walsbyi (strain DSM 16790)
GN=gyrA PE=3 SV=1
Length = 856
Score = 717 bits (1852), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/852 (43%), Positives = 547/852 (64%), Gaps = 49/852 (5%)
Query: 4 FAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPF 63
A EV + +E EM +SY+DYAMSVI GRALPD RDGLKPVHRR+L+AMH+
Sbjct: 15 IAAEVETARIEREMEQSYIDYAMSVIAGRALPDARDGLKPVHRRILYAMHQSGISARSAH 74
Query: 64 VKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYT 123
K + +VGETMG YHPHGD +IY+AL RMAQ FS+R LVDGQGNFGS+DGD AAMRYT
Sbjct: 75 RKSSSIVGETMGDYHPHGDSAIYNALARMAQDFSMRNPLVDGQGNFGSVDGDPPAAMRYT 134
Query: 124 ECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIP 183
E R++ I+ ELL +++ +T++F +NYD + EP+VLP PNLL+NGSSGIAVGM+TNIP
Sbjct: 135 EARMSPIAEELLDNIEMDTVEFTANYDDRLSEPAVLPAAFPNLLVNGSSGIAVGMSTNIP 194
Query: 184 PHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIR 243
PHNL EVID ++++H+PEC++ DL+ + PDFPT I G ++++ Y TG+GRV +R
Sbjct: 195 PHNLGEVIDATIHLIHHPECTVEDLMNHVQGPDFPTGANIVGQNAIYKAYKTGRGRVRVR 254
Query: 244 AKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRI 303
A+ +++ I+I ELP+Q NK L+E+I+ V +E I +LRDESD+ G+R+
Sbjct: 255 AEFDVQD------DRIVITELPFQTNKARLVERIADNVNAGTIEGIRDLRDESDRDGIRV 308
Query: 304 VIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIK 363
V+ELKR P+IV N+L + L++TFG+ LALV+GQP++L LKE L+ ++ HR+ V++
Sbjct: 309 VVELKRGANPDIVKNQLLEH-HLESTFGVINLALVDGQPQVLTLKETLHEYLEHRRTVVR 367
Query: 364 RRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAK-----NKIIEST---W 415
RR+ +EL + R+ AHILEG AL +D+ + IIR+++ AK ++ES
Sbjct: 368 RRSQYELDEKRDRAHILEGRLRALEQVDDVVDIIRNSTDRDNAKAALRGEHVVESDERGE 427
Query: 416 NLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKI 475
+LP + S+ QA I+ M L LT++E +I
Sbjct: 428 SLP-----------------------------TFDFSEDQANHIVAMQLGSLTSLESDEI 458
Query: 476 INKYENVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPST 535
++YE+V +++ L IL+N + ++ DEL I++KY RR+ II + +
Sbjct: 459 EDEYESVQERIERLQTILNNPDELDAVVEDELATIRDKYADE----RRTRIIEDDGTVTH 514
Query: 536 EDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYI 595
EDLIA +D+V+ ++ YIK + ++R+Q RGG+G KD D ++ +++ANTHDY+
Sbjct: 515 EDLIAQEDVVVVVTEDDYIKRMSLEDFRSQHRGGKGIIGTSLKDGDTVSSVYVANTHDYL 574
Query: 596 LCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYV 655
L F+++G++Y LK +QIP+ SR +RGK +N+ L + E+IT ++ + D + Y
Sbjct: 575 LYFTSHGQVYQLKTYQIPEMSRTARGKSAVNLLELDDGEQITAVVNTAEMDIDDDEERYF 634
Query: 656 FMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRF 715
M T G +K+T +++F N R +GIIA++L +D LI +TDG+ DI+L + G A+RF
Sbjct: 635 TMVTQSGYIKRTSVNSFQNIRSTGIIAISLGADDKLIDVEVTDGNRDIILGTRKGMAIRF 694
Query: 716 NENSVRAMGRSARGVIGMRLE-KKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKH 774
NE VR++GRSARGV G++LE V ++Q VLT TE+GYGKRT I Y +
Sbjct: 695 NEGDVRSVGRSARGVHGIKLEDTDAVAALAAVDDDQDDWVLTVTEHGYGKRTDIDRYRQQ 754
Query: 775 NRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVIL 834
+R KG+I IKTN+RNG V V E+ +++ G ++RT V +I +GR+T GVI+
Sbjct: 755 SRNGKGLIDIKTNERNGHVCEVETVGISDELFMMSRKGQILRTPVDDISTVGRNTMGVIV 814
Query: 835 ITVENKSKLCGV 846
+ +E+ + V
Sbjct: 815 MDLEDTDTVASV 826
>sp|Q07702|GYRA_MYCTU DNA gyrase subunit A OS=Mycobacterium tuberculosis GN=gyrA PE=1
SV=2
Length = 838
Score = 716 bits (1848), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 366/843 (43%), Positives = 535/843 (63%), Gaps = 52/843 (6%)
Query: 13 LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE 72
+E+EM +SY+DYAMSVIVGRALP+VRDGLKPVHRRVL+AM + +R K AR V E
Sbjct: 20 IEQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAE 79
Query: 73 TMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISN 132
TMG YHPHGD SIYD+LVRMAQ +SLR LVDGQGNFGS D AAMRYTE RL ++
Sbjct: 80 TMGNYHPHGDASIYDSLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAM 139
Query: 133 ELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVID 192
E+L ++D+ET+DFI NYDG+ +EP+VLP+R PNLL NGS GIAVGMATNIPPHNL E+ D
Sbjct: 140 EMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLRELAD 199
Query: 193 GVLYVLHN----PECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHI 248
V + L N E ++ ++ + PDFPTAG+I G D Y TG+G + +R +
Sbjct: 200 AVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEV 259
Query: 249 EEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDE-SDKSGMRIVIEL 307
EE +R RT+++I ELPYQVN + + I++ V++ KL ISN+ D+ SD+ G+RIVIE+
Sbjct: 260 EEDSR-GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEI 318
Query: 308 KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTI 367
KR+ + ++V+N LYK TQLQ +FG NMLA+V+G P+ L L +++ Y++ H+ +VI RRT
Sbjct: 319 KRDAVAKVVINNLYKHTQLQTSFGANMLAIVDGVPRTLRLDQLIRYYVDHQLDVIVRRTT 378
Query: 368 FELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFN 427
+ LRKA E AHIL GL AL +D I +IR++ T A+ +IE
Sbjct: 379 YRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIE--------------- 423
Query: 428 KKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVI 487
+ + +IQAQ IL M L+RL +E+++II+ + ++
Sbjct: 424 --------------------LLDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIA 463
Query: 488 DLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVIT 547
DL DIL+ +R I+ DEL I +++G RR+ II + S EDLIA +D+V+T
Sbjct: 464 DLEDILAKPERQRGIVRDELAEIVDRHGDD----RRTRIIAADGDVSDEDLIAREDVVVT 519
Query: 548 LSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWL 607
++ GY K YR+QKRGG+G + K +D + F+ +THD IL F+ GR+Y
Sbjct: 520 ITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRA 579
Query: 608 KVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKT 667
K + +P+ SR +RG+ + N+ + + +E+I ++ + R + Y+ ++T G+VKK+
Sbjct: 580 KAYDLPEASRTARGQHVANLLAFQPEERIAQVIQI----RGYTDAPYLVLATRNGLVKKS 635
Query: 668 LLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFN--ENSVRAMGR 725
L++F + R GI+AVNL + D L+GA L D++L S +G+++RF+ + ++R MGR
Sbjct: 636 KLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAGDDLLLVSANGQSIRFSATDEALRPMGR 695
Query: 726 SARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIK 785
+ GV GMR ++++L V + +L AT GY KRT I+EY RG KG++++
Sbjct: 696 ATSGVQGMRFNIDDRLVSLNVV-REGTYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVM 754
Query: 786 TNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCG 845
++R G++V A +V+ E+ +T+GG +IRT ++RK GR T+GV L+ + L
Sbjct: 755 YDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLA 814
Query: 846 VQR 848
+ R
Sbjct: 815 IAR 817
>sp|P48354|GYRA_MYCS2 DNA gyrase subunit A OS=Mycobacterium smegmatis (strain ATCC 700084
/ mc(2)155) GN=gyrA PE=3 SV=1
Length = 842
Score = 714 bits (1842), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 368/843 (43%), Positives = 538/843 (63%), Gaps = 52/843 (6%)
Query: 13 LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE 72
+++EM +SY+DYAMSVIVGRALP+VRDGLKPVHRRVL+AM++ +R K AR V E
Sbjct: 21 IQQEMQRSYIDYAMSVIVGRALPEVRDGLKPVHRRVLYAMYDSGFRPDRSHAKSARSVAE 80
Query: 73 TMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISN 132
TMG YHPHGD SIYD LVRMAQ +SLR LVDGQGNFGS D AAMRYTE RL ++
Sbjct: 81 TMGNYHPHGDASIYDTLVRMAQPWSLRYPLVDGQGNFGSPGNDPPAAMRYTEARLTPLAM 140
Query: 133 ELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVID 192
E+L ++D+ET+DFI NYDG+ +EP+VLP+R PNLL NGS GIAVGMATNIPPHNL E+ +
Sbjct: 141 EMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPPHNLGELAE 200
Query: 193 GVLYVLHN----PECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHI 248
V + L N E + +++ + PDFPT+G+I G + D Y TG+G + +R I
Sbjct: 201 AVYWCLENYEADEEATCEAVMERVKGPDFPTSGLIVGTQGIEDTYKTGRGSIKMRGVVEI 260
Query: 249 EEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDE-SDKSGMRIVIEL 307
EE +R RT+I+I ELPYQVN + + I++ V++ KL ISN+ D+ SD+ G+RIV+EL
Sbjct: 261 EEDSR-GRTSIVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVVEL 319
Query: 308 KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTI 367
KR+ + ++VLN LYK TQLQ +FG NML++V+G P+ L L +++ ++ H+ +VI RRT
Sbjct: 320 KRDAVAKVVLNNLYKHTQLQTSFGANMLSIVDGVPRTLRLDQLIRLYVDHQLDVIVRRTR 379
Query: 368 FELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFN 427
+ LRKA E AHIL GL AL +D I +IR++ T A+ +IE
Sbjct: 380 YRLRKANERAHILRGLVKALDALDEVIALIRASQTVDIARAGLIE--------------- 424
Query: 428 KKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVI 487
+ + DIQAQ IL M L+RL +E++KI++ + ++
Sbjct: 425 --------------------LLDIDDIQAQAILDMQLRRLAALERQKIVDDLAKIEAEIA 464
Query: 488 DLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTEDLIASQDMVIT 547
DL DIL+ +R I+ DEL I +K+G + RR+ I+ S EDLIA +D+V+T
Sbjct: 465 DLEDILAKPERQRGIVRDELKEIVDKHG----DARRTRIVPADGEVSDEDLIAREDVVVT 520
Query: 548 LSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWL 607
++ GY K YR+QKRGG+G + K +D +N F+ +THD+IL F+ GR+Y
Sbjct: 521 ITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDMVNHFFVCSTHDWILFFTTQGRVYRA 580
Query: 608 KVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKT 667
K +++P+ SR +RG+ + N+ + + +E+I ++ + + + D P Y+ ++T G+VKK+
Sbjct: 581 KAYELPEASRTARGQHVANLLAFQPEERIAQVIQIKSYE-DAP---YLVLATRNGLVKKS 636
Query: 668 LLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFN--ENSVRAMGR 725
LS+F + R GI+A+NL D L+GA L D++L S +G+++RF+ + ++R MGR
Sbjct: 637 KLSDFDSNRSGGIVAINLREGDELVGAVLCSAEDDLLLVSANGQSIRFSATDEALRPMGR 696
Query: 726 SARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIK 785
+ GV GMR + ++++L V +L AT GY KRT I EY+ RG KGI++I+
Sbjct: 697 ATSGVQGMRFNEDDRLLSLNVVRPDTY-LLVATSGGYAKRTSIDEYSVQGRGGKGILTIQ 755
Query: 786 TNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCG 845
+++ G +V A +V+ E+ IT+ G +IRT ++RK GR T+GV L+ + L
Sbjct: 756 YDRKRGSLVGALIVDDDTELYAITSTGGVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIA 815
Query: 846 VQR 848
+ R
Sbjct: 816 IAR 818
Score = 41.6 bits (96), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 26/112 (23%), Positives = 56/112 (50%), Gaps = 3/112 (2%)
Query: 652 NNYVFMSTSLGIVKKTLLSNFSNPRKSG--IIAVNLSNE-DFLIGAALTDGSYDIMLFSD 708
+ Y+ ++TS G K+T + +S + G I+ + + L+GA + D ++ +
Sbjct: 721 DTYLLVATSGGYAKRTSIDEYSVQGRGGKGILTIQYDRKRGSLVGALIVDDDTELYAITS 780
Query: 709 SGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATEN 760
+G +R VR GR +GV M L + +IA+ + ++ ++ + +E+
Sbjct: 781 TGGVIRTAARQVRKAGRQTKGVRLMNLAEGDTLIAIARNADEDEAAESISES 832
>sp|P35885|GYRA_STRCO DNA gyrase subunit A OS=Streptomyces coelicolor (strain ATCC
BAA-471 / A3(2) / M145) GN=gyrA PE=3 SV=2
Length = 857
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/859 (43%), Positives = 539/859 (62%), Gaps = 58/859 (6%)
Query: 2 NQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNR 61
+ A V + LE EM +SYLDYAMSVIV RALPDVRDGLKPVHRRVL+AM++ R
Sbjct: 7 DALAMRVEPVGLETEMQRSYLDYAMSVIVSRALPDVRDGLKPVHRRVLYAMYDGGYRPER 66
Query: 62 PFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMR 121
F KCARVVG+ MG YHPHGD SIYDALVR+AQ +S+R LVD GNFGS D AAAMR
Sbjct: 67 GFYKCARVVGDVMGNYHPHGDSSIYDALVRLAQPWSMRMPLVDSNGNFGSPGNDPAAAMR 126
Query: 122 YTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATN 181
YTEC++ +S E++ D+D+ET+DF NYDG+ +EP+VLP R PNLLINGS+GIAVGMATN
Sbjct: 127 YTECKMAPLSMEMVRDIDEETVDFTDNYDGRSQEPTVLPARFPNLLINGSAGIAVGMATN 186
Query: 182 IPPHNLTEVIDGVLYVLHNPECS----INDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGK 237
IPPHNL EV G + L N E S ++ LI+ I PDFPT ++ G + + Y TG+
Sbjct: 187 IPPHNLREVAAGAQWYLENYEASHEELLDALIERIKGPDFPTGALVVGRKGIEEAYRTGR 246
Query: 238 GRVIIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDE-S 296
G + +RA +EE +NR +++ ELPYQ N +L +KI+ LVK+ K+ I+++RDE S
Sbjct: 247 GSITMRAVVEVEEI--QNRQCLVVTELPYQTNPDNLAQKIADLVKDGKVGGIADVRDETS 304
Query: 297 DKSGMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFIL 356
++G R+VI LKR+ + ++VLN LYK T LQ+ FG NMLALV+G P+ L+L + +++
Sbjct: 305 SRTGQRLVIVLKRDAVAKVVLNNLYKHTDLQSNFGANMLALVDGVPRTLSLDAFIRHWVN 364
Query: 357 HRKEVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWN 416
H+ EVI RRT F LRKA E AHIL GL AL ID I +IR + T + A+ ++
Sbjct: 365 HQIEVIVRRTRFRLRKAEERAHILRGLLKALDAIDEVIALIRRSDTVEIARGGLM----- 419
Query: 417 LPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKII 476
D+ ++ +IQA IL+M L+RL +E++KI+
Sbjct: 420 ------------------------------DLLEIDEIQANAILEMQLRRLAALERQKIV 449
Query: 477 NKYENVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPSTE 536
+++ + K+ + +IL++ R I+++EL + KYG +K +++I + S E
Sbjct: 450 REHDELQAKITEYNEILASPVRQRGIVSEELTALVEKYGDDRK----TKLIPYEGDMSIE 505
Query: 537 DLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYIL 596
DLIA +D+V+T++ GYIK +YRAQKRGG+G + K++D +N F++ TH ++L
Sbjct: 506 DLIAEEDIVVTVTRGGYIKRTKTDDYRAQKRGGKGVRGTKLKEDDIVNHFFVSTTHHWLL 565
Query: 597 CFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVF 656
F+N GR+Y K +++P R++RG+ + N+ + + E I I + RD+ Y+
Sbjct: 566 FFTNKGRVYRAKAYELPDAGRDARGQHVANLLAFQPDETIAQIRAI----RDYEAVPYLV 621
Query: 657 MSTSLGIVKKTLLSNFSNPRKSGIIAVNL-----SNEDFLIGAALTDGSYDIMLFSDSGK 711
++T G+VKKT L ++ +PR G+IA+NL ++D LIGA L D++L S +
Sbjct: 622 LATKAGLVKKTPLKDYDSPRSGGVIAINLREQADGSDDELIGAELVSAEDDLLLISKKAQ 681
Query: 712 AVRF--NENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIK 769
++RF +++++R MGR+ GV GM + +++++ V V TAT+ GY KRT +
Sbjct: 682 SIRFTASDDTLRPMGRATSGVKGMSFREGDELLSMNVV-RAGTFVFTATDGGYAKRTSVD 740
Query: 770 EYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRST 829
EY RG GI + K + G +V A +V + EI+ IT G +IRTRV+ +R+ GR T
Sbjct: 741 EYRVQGRGGLGIKAAKIVEDRGSLVGALVVEEHDEILAITLSGGVIRTRVNGVRETGRDT 800
Query: 830 QGVILITVENKSKLCGVQR 848
GV LI + + + G+ R
Sbjct: 801 MGVQLINLGKRDAVVGIAR 819
>sp|B0S912|GYRA_LEPBA DNA gyrase subunit A OS=Leptospira biflexa serovar Patoc (strain
Patoc 1 / Ames) GN=gyrA PE=3 SV=1
Length = 843
Score = 711 bits (1836), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/836 (44%), Positives = 547/836 (65%), Gaps = 49/836 (5%)
Query: 8 VISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCA 67
VI + +E++M ++YLDYAMSVIVGRALPDVRDGLKPVHRRVL AM+E +RP+VK A
Sbjct: 35 VIPVEIEDQMKEAYLDYAMSVIVGRALPDVRDGLKPVHRRVLHAMNERAWRSDRPYVKSA 94
Query: 68 RVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRL 127
++VGE +G YHPHGD ++Y+ +VRMAQ+FS+R TL+DGQGNFGS+DGD+AAA RYTE RL
Sbjct: 95 KIVGEVIGNYHPHGDSAVYETMVRMAQTFSMRETLIDGQGNFGSVDGDNAAAYRYTEARL 154
Query: 128 NKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNL 187
K++ ELL D++K T+ F N+D ++P VLP PN+L+NGS+GIAVGMATNIPPHNL
Sbjct: 155 TKLAEELLKDIEKNTVSFSPNFDDTRQQPDVLPANFPNILVNGSTGIAVGMATNIPPHNL 214
Query: 188 TEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTH 247
E ++ V+ ++ NP+ ++ +L+KI+P PDFPT G I G ++ Y TGKG + IR+K
Sbjct: 215 KEAVNAVIALIQNPDITLPELMKILPGPDFPTGGTIIGGEGLYQAYATGKGSIRIRSKVD 274
Query: 248 IEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIEL 307
I E N + R I+I E+PYQVNKK++LEKI LV EK +E IS + D SD+ G+R+ I +
Sbjct: 275 IIE-NNKGREIIVIHEIPYQVNKKNMLEKIGDLVNEKIIEGISEILDLSDRKGIRVEIHV 333
Query: 308 KRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTI 367
K++ +++LN+L+K TQLQ ++G+ MLA+++ +PK+ +LKEIL + HR+EV+ +RT
Sbjct: 334 KKDANAQVILNQLFKLTQLQVSYGITMLAILDNRPKIFSLKEILKSYAEHRREVVVKRTE 393
Query: 368 FELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFN 427
F+L KA++ AHILEGL IAL NID I+IIR++ +EA++ ++ +
Sbjct: 394 FDLDKAQKRAHILEGLRIALENIDEVIRIIRASKDVREAQSSLMAT-------------- 439
Query: 428 KKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVI 487
+ LS++QA IL+M LQRLT++E +KII++ E V +
Sbjct: 440 ---------------------FSLSELQADAILEMRLQRLTSLEVQKIIDELEQVRILIA 478
Query: 488 DLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAINPST---EDLIASQDM 544
DL DILS R+ II DEL + +G N R +EI L ++ ST EDLIA +++
Sbjct: 479 DLEDILSKPDRVKSIICDELGKVSQSFG----NTRTTEISLESLESSTFNAEDLIADEEV 534
Query: 545 VITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRL 604
V+ LS +IK P+ +R QKRGG+G + + TK ED++ +L A THD ++ FSN GR
Sbjct: 535 VVQLSEDMFIKRLPMDTFRRQKRGGKGVQGISTKREDFVKKLSSAMTHDNLMLFSNKGRA 594
Query: 605 YWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIV 664
+ LKV+++P ++ +RGK + + +L + E IT + R+F + +Y+ M T G V
Sbjct: 595 FLLKVYELPIATKEARGKSLKAVINLNDDEIITSLFTF----RNFDE-SYLLMVTREGFV 649
Query: 665 KKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMG 724
KK L F+N +KSGIIA+ L + D LI +YD+ + S +G A+R N N +R+ G
Sbjct: 650 KKIQLDEFTNTKKSGIIAIGLRDGDELIDVIANPNNYDVFIGSKNGLAIRMNLNELRSQG 709
Query: 725 RSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISI 784
R+A GV M+LE IA + ++ +ENG+GKRT +E++ RG KG+ +
Sbjct: 710 RTASGVTAMKLEDDDS-IAGITKVEPNTNLFCISENGFGKRTDFEEFSTKGRGGKGMTYL 768
Query: 785 KTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENK 840
K ++NG+ V + V E+++IT G+ IR V I +GRS GV ++ +++
Sbjct: 769 KIGEKNGRAVGISSVKEEDELLVITQSGMAIRVEVKTISMVGRSAMGVKVVNTKDE 824
Score = 55.1 bits (131), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 72/328 (21%), Positives = 151/328 (46%), Gaps = 32/328 (9%)
Query: 534 STEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHD 593
+++D+ +Q ++ +L +++ I E R Q+ + ++ DE ++ IA+ D
Sbjct: 425 ASKDVREAQSSLMATFSLSELQADAILEMRLQRLTSLEVQKII--DELEQVRILIADLED 482
Query: 594 YILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNN 653
+ + ++ ++ Q N+R I SL++ E T N D +
Sbjct: 483 ILSKPDRVKSIICDELGKVSQSFGNTRTTEI----SLESLESSTF------NAEDLIADE 532
Query: 654 YVFMSTSLGI-VKKTLLSNFSNPRKSG--IIAVNLSNEDFL--IGAALTDGSYDIMLFSD 708
V + S + +K+ + F ++ G + ++ EDF+ + +A+T ++MLFS+
Sbjct: 533 EVVVQLSEDMFIKRLPMDTFRRQKRGGKGVQGISTKREDFVKKLSSAMTHD--NLMLFSN 590
Query: 709 SGKAVRFNENSV-----RAMGRSARGVIGMRLEKKQKVIALLVSNNQKQS-VLTATENGY 762
G+A + A G+S + VI L + + +L N +S +L T G+
Sbjct: 591 KGRAFLLKVYELPIATKEARGKSLKAVIN--LNDDEIITSLFTFRNFDESYLLMVTREGF 648
Query: 763 GKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVN-RYHEIMLITTGGILIRTRVSE 821
K+ + E+T N GII+I R+G + + N +++ + + G+ IR ++E
Sbjct: 649 VKKIQLDEFT--NTKKSGIIAIGL--RDGDELIDVIANPNNYDVFIGSKNGLAIRMNLNE 704
Query: 822 IRKMGRSTQGVILITVENKSKLCGVQRL 849
+R GR+ GV + +E+ + G+ ++
Sbjct: 705 LRSQGRTASGVTAMKLEDDDSIAGITKV 732
>sp|O84192|GYRA_CHLTR DNA gyrase subunit A OS=Chlamydia trachomatis (strain D/UW-3/Cx)
GN=gyrA PE=3 SV=1
Length = 836
Score = 711 bits (1835), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 363/841 (43%), Positives = 534/841 (63%), Gaps = 47/841 (5%)
Query: 13 LEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGE 72
LEEEM +SYL Y+MSVI+ RALPD RDGLKP RR+L+AM ++N KCA++ G+
Sbjct: 13 LEEEMKESYLRYSMSVIISRALPDARDGLKPSQRRILYAMKQLNLTPGVKHRKCAKICGD 72
Query: 73 TMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISN 132
T G YHPHG+ IY LVRMAQ +++R LVDGQGNFGSIDGD AAAMRYTE RL +
Sbjct: 73 TSGDYHPHGESVIYPTLVRMAQDWAMRYPLVDGQGNFGSIDGDPAAAMRYTEARLTHSAI 132
Query: 133 ELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEVID 192
LL DLDK+T+D + NYD + EP V P++ PNLL NGSSGIAVGMATNIPPHNL E+I+
Sbjct: 133 FLLEDLDKDTVDMVPNYDETKYEPVVFPSKFPNLLCNGSSGIAVGMATNIPPHNLGELIE 192
Query: 193 GVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFN 252
L VL N + SI D+++++P PDFPT GII G + YYTG+G++ +RA+ H+EE +
Sbjct: 193 ATLLVLANSQTSIEDILEVMPGPDFPTGGIICGTEGIRSTYYTGRGKLRLRARMHVEENS 252
Query: 253 RENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEI 312
+ R II+ E+PY VNK L+E+I++L+ EK L IS++RDESDK G+R+V+ELK+ E
Sbjct: 253 DKQRENIILTEMPYNVNKSRLIEQIAELINEKTLTGISDVRDESDKDGIRVVLELKKGES 312
Query: 313 PEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRK 372
E+V+N+LYK T +Q TFG NMLAL P+ +N+ ++ +I HR +VI+RRT +EL K
Sbjct: 313 SEVVINRLYKFTDVQVTFGANMLALDKNLPRTMNIHRMISAWIRHRMDVIQRRTRYELNK 372
Query: 373 AREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYN 432
A AHILEG AL+ +D ++ IR +S + AK +++E
Sbjct: 373 AEARAHILEGFLKALSCMDEVVKTIRESSNKEHAKQQLVE-------------------- 412
Query: 433 TISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDI 492
++ S+ QA IL++ L +LT +E K+ +Y +++K+ +
Sbjct: 413 ---------------LFSFSEAQALAILELRLYQLTGLEADKVQKEYSELLEKITYYRKV 457
Query: 493 LSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAIN-PSTEDLIASQDMVITLSNL 551
L+ + + +II +EL + + K RR+ I ++A + ED+I+ + ++IT+S
Sbjct: 458 LAEEELVKDIIREELQELHKVH----KTPRRTRIEMDAGDVRDIEDIISDESVIITISGD 513
Query: 552 GYIKSQPISEYRAQKRGGRGKKAM-MTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVW 610
Y+K P+ +R QKRGG+G M K D++ ++ A+T DY+L F+N+G+ YWLKVW
Sbjct: 514 DYVKRMPVKVFREQKRGGQGVTGFDMKKGSDFLKAVYSASTKDYLLIFTNFGQCYWLKVW 573
Query: 611 QIPQGSRNSRGKPIINMF-SLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLL 669
++P+G R ++GKPIIN ++ E++ +L N + F + Y+F++T G+VKK L
Sbjct: 574 RLPEGERRAKGKPIINFLEGIRPGEQVAAVL----NVKRFEQGEYLFLATKKGVVKKVSL 629
Query: 670 SNFSNPRKSGIIAVNLSNEDFLIGA-ALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSAR 728
F +PRK GI A+ + + D LI A + + +MLF+ G AVRF + VR MGR+AR
Sbjct: 630 DAFGSPRKKGIRALEIDDGDELIAARHIANDEEKVMLFTRLGMAVRFPHDKVRPMGRAAR 689
Query: 729 GVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNK 788
GV G+ L+ +Q + + QSVL +NG+GKR+L+ ++ + NRG+ G+ SI N+
Sbjct: 690 GVRGVSLKNEQDFVVSCQVVTEDQSVLVVCDNGFGKRSLVCDFRETNRGSVGVRSIVINQ 749
Query: 789 RNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQR 848
RNG V+ A V I+L++ G IR + ++R MGR+TQGV L+ + L +++
Sbjct: 750 RNGDVLGAISVTDCDSILLMSAQGQAIRINMQDVRVMGRATQGVRLVNLREGDTLVAMEK 809
Query: 849 L 849
L
Sbjct: 810 L 810
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 589,014,398
Number of Sequences: 539616
Number of extensions: 26232494
Number of successful extensions: 89412
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1383
Number of HSP's successfully gapped in prelim test: 354
Number of HSP's that attempted gapping in prelim test: 82746
Number of HSP's gapped (non-prelim): 4350
length of query: 1619
length of database: 191,569,459
effective HSP length: 131
effective length of query: 1488
effective length of database: 120,879,763
effective search space: 179869087344
effective search space used: 179869087344
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)