Query psy14505
Match_columns 1619
No_of_seqs 821 out of 6319
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 21:36:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14505.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14505hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1zvu_A Topoisomerase IV subuni 100.0 4E-176 2E-180 1620.7 61.1 684 30-781 1-700 (716)
2 3lpx_A GYRA, DNA gyrase, A sub 100.0 3E-152 1E-156 1342.8 41.9 492 31-527 1-492 (500)
3 2inr_A DNA topoisomerase 4 sub 100.0 5E-152 2E-156 1365.4 37.0 490 1-530 21-510 (514)
4 2nov_A DNA topoisomerase 4 sub 100.0 5E-152 2E-156 1363.3 32.6 485 7-531 3-487 (496)
5 3ilw_A DNA gyrase subunit A; D 100.0 2E-148 8E-153 1317.8 41.1 463 25-527 2-469 (470)
6 2xcs_B DNA gyrase subunit B, D 100.0 2E-146 5E-151 1353.3 44.3 483 6-528 208-691 (692)
7 2xkj_E Topoisomerase IV; type 100.0 2E-142 6E-147 1332.4 40.7 489 7-543 272-767 (767)
8 3l4j_A DNA topoisomerase 2; to 100.0 1E-109 5E-114 1022.4 31.3 474 7-516 246-748 (757)
9 3qx3_A DNA topoisomerase 2-bet 100.0 2E-107 7E-112 1002.2 32.1 474 7-516 287-775 (803)
10 4gfh_A DNA topoisomerase 2; to 100.0 6E-108 2E-112 1087.7 21.1 480 7-516 666-1168(1177)
11 3uc1_A DNA gyrase subunit A; D 100.0 1.9E-56 6.4E-61 530.1 32.1 318 541-866 2-321 (327)
12 3l6v_A GYRA, DNA gyrase subuni 100.0 2.7E-54 9.3E-59 518.2 35.7 313 536-852 1-347 (370)
13 1zi0_A DNA gyrase subunit A; b 100.0 2.4E-52 8.3E-57 492.8 34.6 306 540-850 1-306 (307)
14 1wp5_A Topoisomerase IV; broke 100.0 4.8E-50 1.6E-54 474.9 33.9 305 538-852 1-308 (323)
15 1suu_A DNA gyrase subunit A; t 100.0 6.6E-48 2.3E-52 456.0 35.1 309 535-849 1-310 (312)
16 3no0_A DNA gyrase subunit A; D 100.0 6.2E-45 2.1E-49 422.5 31.3 272 543-851 2-275 (276)
17 3r20_A Cytidylate kinase; stru 100.0 1E-38 3.5E-43 358.9 20.4 215 860-1074 10-229 (233)
18 3l6v_A GYRA, DNA gyrase subuni 100.0 2E-34 6.7E-39 346.0 23.4 201 647-850 2-209 (370)
19 1zi0_A DNA gyrase subunit A; b 100.0 6.1E-33 2.1E-37 327.3 23.1 218 650-877 1-225 (307)
20 1wp5_A Topoisomerase IV; broke 100.0 5.5E-33 1.9E-37 328.9 22.4 218 649-877 2-224 (323)
21 1zvt_A Topoisomerase IV subuni 100.0 1.2E-32 4E-37 315.6 23.3 222 541-785 1-233 (256)
22 1suu_A DNA gyrase subunit A; t 100.0 4.6E-32 1.6E-36 320.5 23.1 221 647-877 3-230 (312)
23 3uc1_A DNA gyrase subunit A; D 100.0 2E-32 6.9E-37 324.3 20.0 218 651-878 2-228 (327)
24 3go5_A Multidomain protein wit 100.0 9E-30 3.1E-34 293.0 26.3 217 1255-1509 5-225 (285)
25 4e22_A Cytidylate kinase; P-lo 100.0 3.2E-30 1.1E-34 296.6 17.8 218 859-1076 27-248 (252)
26 1zvt_A Topoisomerase IV subuni 100.0 1.3E-29 4.3E-34 290.5 20.5 189 651-852 1-199 (256)
27 3ku8_A GYRA14, DNA gyrase subu 100.0 3.4E-30 1.2E-34 264.4 12.6 142 355-497 14-155 (156)
28 3go5_A Multidomain protein wit 100.0 3.7E-28 1.3E-32 279.6 27.0 209 1340-1584 5-217 (285)
29 3no0_A DNA gyrase subunit A; D 99.9 6.9E-26 2.4E-30 262.7 23.2 195 541-749 79-275 (276)
30 1zvu_A Topoisomerase IV subuni 99.9 1.2E-26 3.9E-31 288.5 16.0 193 647-852 467-669 (716)
31 3fdi_A Uncharacterized protein 99.9 6.9E-24 2.4E-28 235.1 8.0 183 860-1072 7-198 (201)
32 1q3t_A Cytidylate kinase; nucl 99.9 6.7E-22 2.3E-26 225.1 20.5 215 858-1072 15-234 (236)
33 2h92_A Cytidylate kinase; ross 99.9 2.9E-21 1E-25 217.0 18.1 208 860-1071 4-216 (219)
34 3hdt_A Putative kinase; struct 99.9 6.2E-22 2.1E-26 222.0 10.1 194 860-1072 15-218 (223)
35 1cke_A CK, MSSA, protein (cyti 99.8 8.1E-20 2.8E-24 206.2 18.2 214 860-1073 6-223 (227)
36 3ake_A Cytidylate kinase; CMP 99.8 1.2E-19 4.2E-24 201.6 18.6 200 861-1071 4-207 (208)
37 1kl9_A Eukaryotic translation 99.7 3.9E-19 1.3E-23 190.9 -8.4 124 1339-1465 13-139 (182)
38 2khi_A 30S ribosomal protein S 99.6 1.2E-15 4.1E-20 152.9 12.5 104 1409-1512 11-114 (115)
39 1kl9_A Eukaryotic translation 99.6 2.3E-18 8E-23 184.9 -9.3 128 1254-1383 13-144 (182)
40 2khi_A 30S ribosomal protein S 99.6 4E-15 1.4E-19 149.0 11.9 104 1322-1425 11-114 (115)
41 2a19_A EIF-2- alpha, eukaryoti 99.5 1.3E-15 4.3E-20 163.0 -2.1 107 1425-1532 11-120 (175)
42 2a19_A EIF-2- alpha, eukaryoti 99.5 2.3E-15 7.7E-20 161.1 -0.5 104 1340-1444 14-120 (175)
43 2khj_A 30S ribosomal protein S 99.5 6.3E-14 2.2E-18 139.1 8.1 95 1408-1503 11-105 (109)
44 2khj_A 30S ribosomal protein S 99.4 1.7E-13 5.8E-18 136.0 7.3 95 1321-1416 11-105 (109)
45 1q8k_A Eukaryotic translation 99.4 1.1E-14 3.9E-19 168.2 -2.5 108 1339-1447 11-121 (308)
46 1q8k_A Eukaryotic translation 99.4 1.7E-14 5.9E-19 166.7 -3.2 107 1427-1535 12-121 (308)
47 2cqo_A Nucleolar protein of 40 99.3 1E-12 3.4E-17 132.0 8.2 95 1415-1510 9-106 (119)
48 2k4k_A GSP13, general stress p 99.3 2.8E-12 9.6E-17 131.0 9.5 83 1424-1507 3-85 (130)
49 2cqo_A Nucleolar protein of 40 99.3 2.4E-12 8.2E-17 129.3 8.6 96 1327-1423 8-106 (119)
50 2eqs_A ATP-dependent RNA helic 99.3 5.5E-12 1.9E-16 123.6 9.7 84 1425-1510 9-95 (103)
51 3aev_A Translation initiation 99.3 1.7E-13 5.7E-18 156.7 -2.2 108 1339-1447 9-119 (275)
52 2eqs_A ATP-dependent RNA helic 99.3 1E-11 3.5E-16 121.7 10.2 87 1336-1424 7-96 (103)
53 2k52_A Uncharacterized protein 99.3 1.5E-11 5.1E-16 114.8 10.6 73 1426-1503 3-75 (80)
54 2k4k_A GSP13, general stress p 99.3 1E-11 3.5E-16 126.9 10.1 83 1337-1420 3-85 (130)
55 3aev_A Translation initiation 99.3 2.8E-13 9.5E-18 154.9 -2.2 108 1427-1535 10-119 (275)
56 1luz_A Protein K3, protein K2; 99.2 5.1E-12 1.8E-16 119.8 6.3 74 1427-1503 10-86 (88)
57 2k52_A Uncharacterized protein 99.2 3.5E-11 1.2E-15 112.3 10.7 74 1338-1416 2-75 (80)
58 1luz_A Protein K3, protein K2; 99.2 1.3E-11 4.6E-16 116.9 6.9 78 1337-1417 7-87 (88)
59 1e3p_A Guanosine pentaphosphat 99.0 6.5E-12 2.2E-16 161.3 -4.0 139 1340-1513 608-754 (757)
60 1wi5_A RRP5 protein homolog; S 99.0 1.6E-10 5.4E-15 116.4 5.5 95 1408-1504 2-98 (119)
61 3cw2_C Translation initiation 99.0 2E-11 6.8E-16 139.4 -1.3 102 1338-1440 8-111 (266)
62 3cw2_C Translation initiation 99.0 1.2E-11 4E-16 141.3 -3.5 101 1426-1527 9-111 (266)
63 1e3p_A Guanosine pentaphosphat 99.0 2E-11 6.7E-16 156.9 -4.9 138 1256-1426 609-754 (757)
64 1wi5_A RRP5 protein homolog; S 98.9 7.6E-10 2.6E-14 111.5 7.2 93 1322-1416 3-97 (119)
65 1via_A Shikimate kinase; struc 98.9 2.1E-09 7.1E-14 115.9 9.1 155 861-1071 6-165 (175)
66 3cdi_A Polynucleotide phosphor 98.9 1.6E-10 5.5E-15 148.0 0.0 125 1348-1509 581-706 (723)
67 3nwj_A ATSK2; P loop, shikimat 98.9 1.2E-09 4.2E-14 124.4 7.0 161 860-1075 49-239 (250)
68 3cdi_A Polynucleotide phosphor 98.8 3.6E-10 1.2E-14 144.9 0.0 85 1337-1423 623-707 (723)
69 1jjv_A Dephospho-COA kinase; P 98.8 3.7E-09 1.3E-13 117.0 6.7 186 860-1074 3-198 (206)
70 4aid_A Polyribonucleotide nucl 98.8 7.1E-10 2.4E-14 141.3 0.0 90 1418-1509 627-716 (726)
71 3psi_A Transcription elongatio 98.8 1.1E-08 3.6E-13 137.0 10.2 78 1424-1501 898-975 (1219)
72 4aid_A Polyribonucleotide nucl 98.7 1.3E-09 4.3E-14 138.9 0.0 93 1331-1425 627-719 (726)
73 3psi_A Transcription elongatio 98.7 1.8E-08 6E-13 134.9 10.1 80 1336-1415 897-976 (1219)
74 1zuh_A Shikimate kinase; alpha 98.7 6.1E-08 2.1E-12 103.5 11.9 155 859-1070 7-167 (168)
75 1uj2_A Uridine-cytidine kinase 98.7 6.7E-09 2.3E-13 118.9 4.6 187 858-1075 21-236 (252)
76 1go3_E DNA-directed RNA polyme 98.6 4.5E-08 1.5E-12 106.7 8.5 78 1427-1506 80-173 (187)
77 3bzc_A TEX; helix-turn-helix, 98.6 1.6E-08 5.6E-13 130.3 5.5 76 1426-1502 652-727 (785)
78 3psf_A Transcription elongatio 98.6 5.3E-09 1.8E-13 138.0 0.0 79 1424-1502 901-979 (1030)
79 1go3_E DNA-directed RNA polyme 98.6 5.9E-08 2E-12 105.8 8.3 79 1338-1418 78-172 (187)
80 3bzc_A TEX; helix-turn-helix, 98.6 2E-08 6.9E-13 129.4 4.5 78 1337-1415 650-727 (785)
81 3psf_A Transcription elongatio 98.5 1.1E-08 3.6E-13 135.1 0.2 80 1337-1416 901-980 (1030)
82 4ayb_E DNA-directed RNA polyme 98.5 1.3E-07 4.3E-12 102.5 8.4 78 1427-1505 80-171 (180)
83 2c95_A Adenylate kinase 1; tra 98.5 1.3E-07 4.5E-12 103.2 8.6 178 859-1074 9-195 (196)
84 1a7j_A Phosphoribulokinase; tr 98.5 6.4E-08 2.2E-12 113.0 5.9 176 859-1056 5-216 (290)
85 2nn6_I 3'-5' exoribonuclease C 98.5 2.1E-07 7.2E-12 102.5 8.9 76 1338-1414 78-163 (209)
86 2nn6_I 3'-5' exoribonuclease C 98.5 1.6E-07 5.6E-12 103.3 7.9 76 1425-1501 78-163 (209)
87 2if2_A Dephospho-COA kinase; a 98.5 8.4E-08 2.9E-12 105.8 5.6 191 860-1079 2-198 (204)
88 1hh2_P NUSA, N utilization sub 98.5 3.6E-08 1.2E-12 115.2 2.4 130 1209-1349 85-220 (344)
89 2bh8_A 1B11; transcription, mo 98.5 3.1E-07 1E-11 89.3 8.2 83 1339-1464 11-97 (101)
90 2b8k_G B16, DNA-directed RNA p 98.4 3.6E-07 1.2E-11 100.8 8.7 77 1427-1506 82-171 (215)
91 3m7n_A Putative uncharacterize 98.4 6.1E-07 2.1E-11 96.6 10.2 69 1339-1414 56-134 (179)
92 1kht_A Adenylate kinase; phosp 98.4 2.2E-07 7.6E-12 100.9 6.3 169 860-1070 4-191 (192)
93 1vht_A Dephospho-COA kinase; s 98.4 3.4E-07 1.2E-11 102.1 7.9 186 860-1075 5-197 (218)
94 1y14_B B16, RPB7, DNA-directed 98.4 5E-07 1.7E-11 96.8 8.8 71 1427-1500 82-165 (171)
95 2b8k_G B16, DNA-directed RNA p 98.4 5E-07 1.7E-11 99.6 8.9 79 1339-1420 81-172 (215)
96 3trf_A Shikimate kinase, SK; a 98.4 3.7E-07 1.3E-11 98.9 7.3 165 860-1075 6-177 (185)
97 1ukz_A Uridylate kinase; trans 98.4 1.8E-06 6.2E-11 95.0 12.8 178 858-1072 14-201 (203)
98 1y14_B B16, RPB7, DNA-directed 98.4 7.8E-07 2.7E-11 95.3 9.4 73 1339-1413 81-165 (171)
99 1uf9_A TT1252 protein; P-loop, 98.4 5.9E-07 2E-11 98.6 8.4 177 858-1075 7-196 (203)
100 1hh2_P NUSA, N utilization sub 98.3 6.6E-08 2.2E-12 113.0 0.5 104 1300-1412 87-199 (344)
101 3m7n_A Putative uncharacterize 98.3 6.4E-07 2.2E-11 96.5 8.1 68 1427-1501 57-134 (179)
102 3vaa_A Shikimate kinase, SK; s 98.3 1.9E-06 6.6E-11 94.6 12.1 164 860-1075 26-198 (199)
103 4ayb_E DNA-directed RNA polyme 98.3 8.7E-07 3E-11 95.8 9.0 77 1254-1330 79-170 (180)
104 2f6r_A COA synthase, bifunctio 98.3 2.5E-07 8.4E-12 107.7 4.8 190 858-1075 74-271 (281)
105 2c35_B Human RPB7, DNA-directe 98.3 8.4E-07 2.9E-11 95.2 8.5 71 1427-1500 80-165 (172)
106 1tev_A UMP-CMP kinase; ploop, 98.3 1E-06 3.4E-11 95.9 9.2 179 860-1071 4-193 (196)
107 2iyv_A Shikimate kinase, SK; t 98.3 4.4E-07 1.5E-11 98.3 5.9 155 861-1072 4-168 (184)
108 2je6_I RRP4, exosome complex R 98.3 6.4E-07 2.2E-11 101.3 6.8 74 1338-1413 71-147 (251)
109 2bh8_A 1B11; transcription, mo 98.3 1E-06 3.4E-11 85.7 7.2 82 1253-1376 10-96 (101)
110 1e6c_A Shikimate kinase; phosp 98.3 1.3E-06 4.3E-11 93.4 8.5 156 860-1071 3-169 (173)
111 2z0s_A Probable exosome comple 98.3 7E-07 2.4E-11 100.4 6.5 75 1338-1413 63-140 (235)
112 2bwj_A Adenylate kinase 5; pho 98.3 1.9E-06 6.6E-11 94.1 9.7 173 860-1073 13-197 (199)
113 3lw7_A Adenylate kinase relate 98.2 3.9E-06 1.3E-10 89.3 11.8 167 860-1074 2-178 (179)
114 2c35_B Human RPB7, DNA-directe 98.2 1.8E-06 6E-11 92.7 8.9 73 1339-1413 79-165 (172)
115 2z0s_A Probable exosome comple 98.2 1E-06 3.5E-11 99.1 6.8 74 1426-1500 64-140 (235)
116 3t61_A Gluconokinase; PSI-biol 98.2 3.4E-06 1.2E-10 92.8 10.8 155 859-1072 18-179 (202)
117 2jeo_A Uridine-cytidine kinase 98.2 6.9E-07 2.4E-11 101.7 4.3 185 860-1072 26-235 (245)
118 2ba0_A Archeal exosome RNA bin 98.2 2.3E-06 8E-11 95.6 7.9 75 1338-1413 54-128 (229)
119 3iij_A Coilin-interacting nucl 98.2 4E-06 1.4E-10 90.3 9.5 156 861-1074 13-175 (180)
120 3uie_A Adenylyl-sulfate kinase 98.2 1.3E-06 4.4E-11 96.2 5.5 162 860-1072 26-194 (200)
121 2ba0_A Archeal exosome RNA bin 98.1 4.8E-06 1.6E-10 93.0 9.6 73 1427-1500 56-128 (229)
122 2je6_I RRP4, exosome complex R 98.1 2.6E-06 8.8E-11 96.4 6.8 72 1427-1500 73-147 (251)
123 3h0g_G DNA-directed RNA polyme 98.1 1.4E-06 4.9E-11 93.2 4.4 71 1427-1500 83-166 (172)
124 2grj_A Dephospho-COA kinase; T 98.1 9.9E-06 3.4E-10 88.5 11.0 169 859-1073 12-187 (192)
125 2pt5_A Shikimate kinase, SK; a 98.0 4.8E-06 1.6E-10 88.5 7.2 153 861-1071 2-162 (168)
126 1qf9_A UMP/CMP kinase, protein 98.0 7.8E-06 2.7E-10 88.7 9.0 174 860-1072 7-191 (194)
127 3h0g_G DNA-directed RNA polyme 98.0 2.2E-06 7.6E-11 91.7 4.4 73 1338-1413 81-166 (172)
128 1kag_A SKI, shikimate kinase I 98.0 4.2E-06 1.4E-10 89.4 6.0 155 861-1071 6-171 (173)
129 3kb2_A SPBC2 prophage-derived 98.0 1.5E-05 5.3E-10 84.6 9.8 37 860-896 2-38 (173)
130 4eun_A Thermoresistant glucoki 98.0 5.3E-05 1.8E-09 83.2 14.3 157 860-1072 30-193 (200)
131 2cdn_A Adenylate kinase; phosp 97.9 4.1E-05 1.4E-09 84.0 11.3 168 859-1071 20-200 (201)
132 1y63_A LMAJ004144AAA protein; 97.8 6.2E-05 2.1E-09 81.4 10.2 158 860-1071 11-176 (184)
133 4i1u_A Dephospho-COA kinase; s 97.8 2.8E-05 9.7E-10 85.6 7.2 188 859-1075 9-204 (210)
134 1zak_A Adenylate kinase; ATP:A 97.7 4.7E-05 1.6E-09 84.9 8.5 37 860-896 6-42 (222)
135 3fb4_A Adenylate kinase; psych 97.7 5.9E-05 2E-09 83.6 9.1 36 861-896 2-37 (216)
136 2vli_A Antibiotic resistance p 97.7 8.7E-05 3E-09 79.8 9.8 32 859-890 5-37 (183)
137 1knq_A Gluconate kinase; ALFA/ 97.7 0.00022 7.4E-09 76.2 12.9 36 860-895 9-44 (175)
138 3dl0_A Adenylate kinase; phosp 97.7 7.8E-05 2.7E-09 82.7 9.4 36 861-896 2-37 (216)
139 3umf_A Adenylate kinase; rossm 97.7 0.00012 4.2E-09 81.2 10.7 172 860-1072 30-213 (217)
140 3be4_A Adenylate kinase; malar 97.7 0.00013 4.6E-09 81.0 10.8 38 858-895 4-41 (217)
141 1m8p_A Sulfate adenylyltransfe 97.6 0.00018 6.1E-09 91.4 11.9 164 859-1072 396-566 (573)
142 3sr0_A Adenylate kinase; phosp 97.6 0.00012 4.3E-09 80.7 9.2 36 861-896 2-37 (206)
143 2id0_A Exoribonuclease 2; RNAs 97.6 7.3E-05 2.5E-09 96.1 8.4 72 1427-1498 557-642 (644)
144 1zd8_A GTP:AMP phosphotransfer 97.6 9.1E-05 3.1E-09 82.9 8.0 38 859-896 7-44 (227)
145 3cm0_A Adenylate kinase; ATP-b 97.5 0.00021 7E-09 77.1 9.6 37 860-896 5-41 (186)
146 1ak2_A Adenylate kinase isoenz 97.5 0.00032 1.1E-08 78.8 11.5 40 858-897 15-54 (233)
147 1aky_A Adenylate kinase; ATP:A 97.5 0.0003 1E-08 78.2 10.9 37 860-896 5-41 (220)
148 2asb_A Transcription elongatio 97.5 0.00021 7.3E-09 79.2 9.3 86 1084-1172 6-101 (251)
149 1qhx_A CPT, protein (chloramph 97.5 0.00045 1.5E-08 73.8 11.6 158 860-1070 4-176 (178)
150 2rhm_A Putative kinase; P-loop 97.5 0.0014 4.9E-08 70.7 15.6 36 860-895 6-41 (193)
151 3ayh_B DNA-directed RNA polyme 97.5 0.00017 6E-09 79.1 7.9 64 1427-1491 80-161 (203)
152 2id0_A Exoribonuclease 2; RNAs 97.5 0.00019 6.6E-09 92.2 9.6 74 1338-1411 555-642 (644)
153 3tlx_A Adenylate kinase 2; str 97.4 0.00012 4E-09 83.1 6.6 38 859-896 29-66 (243)
154 2ckz_B C25, DNA-directed RNA p 97.4 0.00022 7.6E-09 78.8 7.4 66 1427-1492 80-158 (218)
155 2nn6_H Exosome complex exonucl 97.4 8.1E-05 2.8E-09 86.1 4.0 75 1338-1413 92-175 (308)
156 1nks_A Adenylate kinase; therm 97.3 0.0011 3.7E-08 71.6 12.3 36 860-895 2-42 (194)
157 2bx2_L Ribonuclease E, RNAse E 97.3 0.00029 1E-08 86.7 8.3 80 1338-1417 42-131 (517)
158 3ayh_B DNA-directed RNA polyme 97.3 0.00033 1.1E-08 76.9 7.8 65 1339-1404 79-161 (203)
159 3a4m_A L-seryl-tRNA(SEC) kinas 97.3 0.00055 1.9E-08 78.3 9.6 35 859-893 4-43 (260)
160 1k0r_A NUSA; two component arr 97.3 8.2E-05 2.8E-09 87.1 2.6 79 1334-1419 121-208 (366)
161 1k0r_A NUSA; two component arr 97.2 0.00083 2.8E-08 78.7 10.2 77 1083-1162 128-213 (366)
162 2yvu_A Probable adenylyl-sulfa 97.1 0.0011 3.9E-08 71.4 9.9 34 860-893 14-52 (186)
163 2pbr_A DTMP kinase, thymidylat 97.1 0.0033 1.1E-07 67.8 13.6 30 861-890 2-34 (195)
164 1e4v_A Adenylate kinase; trans 97.1 0.00038 1.3E-08 77.0 6.1 36 861-896 2-37 (214)
165 1x6v_B Bifunctional 3'-phospho 97.1 0.00091 3.1E-08 85.0 9.9 32 859-890 52-86 (630)
166 2xb4_A Adenylate kinase; ATP-b 97.1 0.00092 3.2E-08 74.6 8.9 36 861-896 2-37 (223)
167 2bx2_L Ribonuclease E, RNAse E 97.1 0.00068 2.3E-08 83.5 8.2 77 1427-1503 44-130 (517)
168 2ckz_B C25, DNA-directed RNA p 97.1 0.00065 2.2E-08 75.1 7.1 68 1338-1405 78-158 (218)
169 2vnu_D Exosome complex exonucl 97.1 0.0003 1E-08 92.0 5.1 70 1430-1499 671-760 (760)
170 2z0h_A DTMP kinase, thymidylat 97.0 0.002 6.9E-08 69.8 10.8 72 991-1075 122-194 (197)
171 2wp8_J Exosome complex exonucl 97.0 0.00048 1.6E-08 91.7 6.0 71 1429-1499 887-977 (977)
172 2asb_A Transcription elongatio 96.9 0.0014 4.9E-08 72.7 8.4 67 1255-1327 6-82 (251)
173 2nn6_H Exosome complex exonucl 96.9 0.00076 2.6E-08 78.1 6.4 73 1427-1500 94-175 (308)
174 3c8u_A Fructokinase; YP_612366 96.9 0.003 1E-07 69.5 10.6 77 974-1054 125-207 (208)
175 2ja9_A Exosome complex exonucl 96.9 0.0019 6.4E-08 68.8 8.1 71 1339-1412 5-76 (175)
176 2plr_A DTMP kinase, probable t 96.8 0.0063 2.2E-07 66.5 12.5 30 860-889 5-36 (213)
177 2vnu_D Exosome complex exonucl 96.8 0.0011 3.7E-08 86.8 6.8 70 1343-1412 671-760 (760)
178 2jaq_A Deoxyguanosine kinase; 96.8 0.0017 5.7E-08 70.8 7.3 30 861-890 2-31 (205)
179 2wp8_J Exosome complex exonucl 96.7 0.0013 4.5E-08 87.6 7.0 71 1342-1412 887-977 (977)
180 2ja9_A Exosome complex exonucl 96.7 0.0039 1.3E-07 66.4 8.8 70 1427-1499 6-76 (175)
181 3asz_A Uridine kinase; cytidin 96.7 0.0038 1.3E-07 68.6 9.2 189 860-1075 7-206 (211)
182 1m7g_A Adenylylsulfate kinase; 96.6 0.0083 2.9E-07 66.0 11.4 32 860-891 26-63 (211)
183 2qt1_A Nicotinamide riboside k 96.6 0.0016 5.6E-08 71.4 5.5 37 859-895 21-58 (207)
184 1nn5_A Similar to deoxythymidy 96.4 0.0098 3.4E-07 65.2 10.0 74 991-1076 130-204 (215)
185 2wwf_A Thymidilate kinase, put 96.3 0.0054 1.8E-07 67.2 7.8 31 860-890 11-41 (212)
186 3gmt_A Adenylate kinase; ssgci 96.2 0.011 3.9E-07 65.7 9.6 38 859-896 8-45 (230)
187 2qor_A Guanylate kinase; phosp 96.2 0.0049 1.7E-07 67.6 6.4 92 971-1074 101-198 (204)
188 2pez_A Bifunctional 3'-phospho 96.0 0.029 9.9E-07 59.8 11.1 31 860-890 6-39 (179)
189 2gks_A Bifunctional SAT/APS ki 95.7 0.013 4.4E-07 74.1 8.1 35 859-893 372-411 (546)
190 1ly1_A Polynucleotide kinase; 95.6 0.054 1.9E-06 57.3 11.1 34 861-895 4-38 (181)
191 2p5t_B PEZT; postsegregational 95.5 0.0038 1.3E-07 71.0 1.7 34 860-893 33-68 (253)
192 3hjn_A DTMP kinase, thymidylat 95.4 0.053 1.8E-06 59.1 10.3 73 991-1075 122-194 (197)
193 3ch4_B Pmkase, phosphomevalona 95.4 0.012 4.3E-07 63.9 5.1 50 858-909 10-62 (202)
194 4eaq_A DTMP kinase, thymidylat 95.1 0.17 5.9E-06 56.3 13.5 32 859-890 26-59 (229)
195 3cr8_A Sulfate adenylyltranfer 94.7 0.035 1.2E-06 70.0 7.2 35 860-894 370-410 (552)
196 2v54_A DTMP kinase, thymidylat 94.2 0.1 3.6E-06 56.4 8.9 31 860-890 5-36 (204)
197 1ltq_A Polynucleotide kinase; 93.9 0.26 8.8E-06 57.0 12.1 34 861-895 4-38 (301)
198 2nn6_G Exosome complex exonucl 93.9 0.09 3.1E-06 60.2 7.7 70 1427-1499 126-195 (289)
199 4hlc_A DTMP kinase, thymidylat 93.8 0.25 8.4E-06 54.1 10.9 28 861-888 4-33 (205)
200 2nn6_G Exosome complex exonucl 93.7 0.096 3.3E-06 60.0 7.6 71 1339-1412 125-195 (289)
201 3v9p_A DTMP kinase, thymidylat 93.4 0.12 4E-06 57.7 7.4 29 859-887 25-53 (227)
202 4edh_A DTMP kinase, thymidylat 93.0 0.27 9.3E-06 54.1 9.7 80 989-1075 130-209 (213)
203 2bdt_A BH3686; alpha-beta prot 92.9 0.26 9E-06 52.7 9.2 35 861-895 4-39 (189)
204 3lv8_A DTMP kinase, thymidylat 92.8 0.086 3E-06 59.1 5.3 80 989-1076 153-232 (236)
205 1sq5_A Pantothenate kinase; P- 91.8 0.042 1.4E-06 64.3 1.1 35 860-894 81-122 (308)
206 3zvl_A Bifunctional polynucleo 91.2 0.49 1.7E-05 57.6 9.8 34 860-893 259-292 (416)
207 1p5z_B DCK, deoxycytidine kina 91.1 0.67 2.3E-05 52.5 10.3 32 858-889 23-55 (263)
208 3tr0_A Guanylate kinase, GMP k 90.9 0.71 2.4E-05 49.8 9.8 67 992-1072 119-186 (205)
209 1zp6_A Hypothetical protein AT 90.7 1.3 4.5E-05 47.0 11.6 35 861-895 11-47 (191)
210 3d3q_A TRNA delta(2)-isopenten 90.5 0.16 5.5E-06 59.8 4.3 36 860-895 8-45 (340)
211 1g8f_A Sulfate adenylyltransfe 89.4 0.49 1.7E-05 58.9 7.7 33 859-891 395-434 (511)
212 3tmk_A Thymidylate kinase; pho 89.2 0.2 6.9E-06 55.3 3.6 83 989-1077 124-207 (216)
213 3tqc_A Pantothenate kinase; bi 88.9 0.48 1.6E-05 55.5 6.6 37 859-895 92-135 (321)
214 4tmk_A Protein (thymidylate ki 88.7 0.19 6.6E-06 55.3 3.0 79 989-1075 131-209 (213)
215 1gxr_A ESG1, transducin-like e 88.2 37 0.0013 38.0 29.2 228 538-818 105-334 (337)
216 3ld9_A DTMP kinase, thymidylat 87.7 1 3.5E-05 49.8 8.0 75 990-1076 145-219 (223)
217 2ocp_A DGK, deoxyguanosine kin 87.1 3 0.0001 46.3 11.6 28 860-887 3-31 (241)
218 3tau_A Guanylate kinase, GMP k 84.7 0.9 3.1E-05 49.5 5.6 25 860-884 9-33 (208)
219 2j41_A Guanylate kinase; GMP, 84.6 1.1 3.9E-05 48.1 6.4 24 860-883 7-30 (207)
220 1r5m_A SIR4-interacting protei 84.4 66 0.0023 37.2 25.3 244 539-819 158-423 (425)
221 3a8t_A Adenylate isopentenyltr 81.9 1.6 5.6E-05 51.1 6.5 34 860-893 41-74 (339)
222 1gvn_B Zeta; postsegregational 81.8 6.2 0.00021 45.2 11.4 34 860-893 34-69 (287)
223 1ex7_A Guanylate kinase; subst 79.8 1.4 4.7E-05 47.3 4.6 169 862-1071 4-183 (186)
224 3zwl_B Eukaryotic translation 79.4 88 0.003 35.3 28.5 247 537-821 81-346 (369)
225 2r7d_A Ribonuclease II family 78.4 2.6 8.9E-05 51.9 7.0 60 1427-1499 402-461 (469)
226 1rz3_A Hypothetical protein rb 78.1 1.3 4.5E-05 47.9 3.8 37 859-895 22-63 (201)
227 2axn_A 6-phosphofructo-2-kinas 78.1 5.2 0.00018 50.0 9.7 36 860-895 36-76 (520)
228 3a00_A Guanylate kinase, GMP k 78.0 1.7 5.8E-05 46.3 4.6 24 861-884 3-26 (186)
229 1r5m_A SIR4-interacting protei 78.0 1.1E+02 0.0036 35.4 29.0 246 531-821 46-319 (425)
230 2rf4_A DNA-directed RNA polyme 76.4 7.2 0.00025 42.7 9.1 67 1338-1405 126-204 (214)
231 3exa_A TRNA delta(2)-isopenten 75.8 1.7 5.8E-05 50.5 4.0 36 860-895 4-41 (322)
232 2bbw_A Adenylate kinase 4, AK4 74.7 1.3 4.4E-05 49.5 2.7 36 860-895 28-63 (246)
233 2rf4_A DNA-directed RNA polyme 74.3 6.4 0.00022 43.1 8.0 65 1255-1319 128-205 (214)
234 3d0f_A Penicillin-binding 1 tr 73.7 6 0.00021 38.2 6.8 58 1339-1396 31-93 (106)
235 2r7d_A Ribonuclease II family 71.5 4.5 0.00015 49.7 6.6 59 1340-1411 402-460 (469)
236 1sq9_A Antiviral protein SKI8; 71.3 1.5E+02 0.0051 34.0 24.9 195 543-769 82-321 (397)
237 2ze6_A Isopentenyl transferase 70.8 1.6 5.5E-05 49.1 2.3 34 861-894 3-36 (253)
238 1kgd_A CASK, peripheral plasma 70.5 5.6 0.00019 41.9 6.3 23 861-883 7-29 (180)
239 3odt_A Protein DOA1; ubiquitin 68.6 1.4E+02 0.0048 32.6 27.8 231 537-822 66-297 (313)
240 1gxr_A ESG1, transducin-like e 68.1 1.5E+02 0.0051 32.8 32.6 239 535-821 56-296 (337)
241 3d0f_A Penicillin-binding 1 tr 67.7 9.2 0.00032 36.8 6.6 57 1427-1483 32-93 (106)
242 3eph_A TRNA isopentenyltransfe 67.6 1.7 5.8E-05 52.2 1.6 36 860-895 3-40 (409)
243 3h8z_A FragIle X mental retard 67.1 5.3 0.00018 39.9 4.8 95 1429-1549 15-114 (128)
244 4aez_A CDC20, WD repeat-contai 66.9 1.9E+02 0.0066 33.6 26.9 233 538-821 142-380 (401)
245 1t3j_A Mitofusin 1; coiled coi 66.3 9.8 0.00033 35.8 6.0 52 463-514 40-94 (96)
246 3lnc_A Guanylate kinase, GMP k 62.4 7.3 0.00025 42.8 5.4 24 860-883 28-52 (231)
247 1k8k_C P40, ARP2/3 complex 41 61.0 2.2E+02 0.0074 32.1 31.1 251 535-821 13-274 (372)
248 1odf_A YGR205W, hypothetical 3 60.5 17 0.0006 41.6 8.3 27 858-884 30-56 (290)
249 4b9x_A TDRD1, tudor domain-con 58.8 59 0.002 35.6 12.0 137 1126-1276 12-176 (226)
250 3odt_A Protein DOA1; ubiquitin 57.6 2.2E+02 0.0074 31.1 30.6 226 540-821 27-255 (313)
251 1jjg_A M156R; beta barrel, S1 57.5 20 0.00068 33.0 6.1 62 1253-1316 29-94 (102)
252 1k8k_C P40, ARP2/3 complex 41 55.9 2.6E+02 0.0089 31.4 27.4 172 633-821 52-233 (372)
253 1wfq_A UNR protein; beta-barre 55.2 40 0.0014 31.4 8.2 60 1511-1571 11-70 (89)
254 2vp4_A Deoxynucleoside kinase; 53.0 6.8 0.00023 43.1 3.1 76 990-1074 146-226 (230)
255 1vyh_C Platelet-activating fac 52.8 3.3E+02 0.011 31.8 29.9 233 536-820 114-368 (410)
256 4b9w_A TDRD1, tudor domain-con 50.1 87 0.003 33.5 11.3 137 1126-1276 12-176 (201)
257 1jjg_A M156R; beta barrel, S1 49.3 73 0.0025 29.4 8.4 61 1511-1573 28-94 (102)
258 2yty_A Cold shock domain-conta 49.2 28 0.00096 32.4 6.1 53 1515-1568 15-67 (88)
259 3h8z_A FragIle X mental retard 48.9 21 0.00071 35.6 5.4 97 1341-1462 14-115 (128)
260 3dwl_C Actin-related protein 2 48.5 3.4E+02 0.012 30.6 22.6 255 533-820 14-280 (377)
261 1dek_A Deoxynucleoside monopho 48.3 13 0.00043 41.5 4.3 39 860-898 2-41 (241)
262 3sfz_A APAF-1, apoptotic pepti 48.3 6E+02 0.021 34.4 22.4 264 540-847 892-1196(1249)
263 4aow_A Guanine nucleotide-bind 48.0 3.2E+02 0.011 30.1 28.0 242 538-820 94-336 (340)
264 3crm_A TRNA delta(2)-isopenten 47.9 7.1 0.00024 45.5 2.3 33 861-893 7-39 (323)
265 3jro_A Fusion protein of prote 47.1 5.6E+02 0.019 32.8 22.2 246 538-820 17-284 (753)
266 3gre_A Serine/threonine-protei 45.8 4.1E+02 0.014 30.8 18.1 187 617-821 48-245 (437)
267 3foz_A TRNA delta(2)-isopenten 45.5 16 0.00054 42.3 4.6 36 860-895 11-48 (316)
268 1bif_A 6-phosphofructo-2-kinas 45.5 77 0.0026 38.7 11.2 32 860-891 40-71 (469)
269 3i4o_A Translation initiation 45.3 58 0.002 29.6 7.3 64 1431-1499 15-79 (79)
270 2eqj_A Metal-response element- 45.2 1E+02 0.0035 26.9 8.3 53 1381-1462 8-62 (66)
271 2xzh_A Clathrin heavy chain 1; 45.1 4.2E+02 0.014 30.9 16.1 64 650-719 269-332 (365)
272 3mkq_A Coatomer beta'-subunit; 45.0 5.9E+02 0.02 32.4 31.4 237 536-821 19-259 (814)
273 3zwl_B Eukaryotic translation 44.9 3.6E+02 0.012 29.9 30.1 197 591-821 43-249 (369)
274 3aez_A Pantothenate kinase; tr 42.4 28 0.00095 40.3 6.2 56 975-1030 197-271 (312)
275 3i4o_A Translation initiation 40.8 42 0.0015 30.5 5.7 63 1344-1411 15-78 (79)
276 3i2z_B RNA chaperone, negative 40.4 82 0.0028 27.9 7.5 53 1518-1570 5-59 (71)
277 3okq_A BUD site selection prot 40.3 40 0.0014 33.8 5.9 43 471-513 55-98 (141)
278 2xzh_A Clathrin heavy chain 1; 40.1 2.1E+02 0.0073 33.3 12.7 74 738-821 259-332 (365)
279 2eqj_A Metal-response element- 39.9 1.3E+02 0.0045 26.2 8.2 36 1339-1374 24-61 (66)
280 2pbi_B Guanine nucleotide-bind 39.9 4.6E+02 0.016 29.7 32.7 295 472-820 13-314 (354)
281 3ow8_A WD repeat-containing pr 38.3 4.7E+02 0.016 29.3 28.5 146 650-821 132-279 (321)
282 3cam_A Cold-shock domain famil 37.2 1E+02 0.0034 27.0 7.4 51 1520-1570 3-55 (67)
283 1bpo_A Protein (clathrin); cla 35.5 3.4E+02 0.012 32.9 13.8 109 702-821 214-331 (494)
284 3mkq_A Coatomer beta'-subunit; 35.2 8E+02 0.027 31.1 26.2 190 590-820 23-216 (814)
285 3hxj_A Pyrrolo-quinoline quino 35.1 1.7E+02 0.0058 32.6 11.4 60 751-821 265-324 (330)
286 1p22_A F-BOX/WD-repeat protein 35.0 6E+02 0.02 29.6 23.5 233 541-821 182-414 (435)
287 2k5n_A Putative cold-shock pro 33.8 1.3E+02 0.0046 26.8 7.8 48 1519-1569 3-52 (74)
288 3ow8_A WD repeat-containing pr 33.3 5.5E+02 0.019 28.6 26.8 228 539-818 89-318 (321)
289 3gre_A Serine/threonine-protei 32.5 6.3E+02 0.022 29.1 20.7 212 533-769 66-291 (437)
290 1bpo_A Protein (clathrin); cla 31.8 7.7E+02 0.026 29.9 17.0 112 594-720 214-332 (494)
291 2k5n_A Putative cold-shock pro 31.5 1.5E+02 0.0051 26.5 7.7 49 1087-1139 1-52 (74)
292 1wfq_A UNR protein; beta-barre 31.4 1.9E+02 0.0066 26.7 8.7 56 1082-1139 12-68 (89)
293 3ei3_B DNA damage-binding prot 31.3 6.1E+02 0.021 28.6 24.5 148 541-718 130-281 (383)
294 2ga8_A Hypothetical 39.9 kDa p 30.0 32 0.0011 40.5 4.0 42 993-1034 291-332 (359)
295 1h95_A CSD, Y-box binding prot 29.7 1.7E+02 0.0059 26.4 7.9 53 1517-1569 7-65 (79)
296 4b4t_K 26S protease regulatory 29.5 37 0.0013 41.1 4.5 29 862-890 209-237 (428)
297 1c9o_A CSPB, cold-shock protei 28.8 2.1E+02 0.0071 24.8 8.1 51 1519-1570 2-54 (66)
298 2ytx_A Cold shock domain-conta 28.7 1.5E+02 0.005 28.0 7.6 50 1342-1398 16-67 (97)
299 1c9o_A CSPB, cold-shock protei 28.5 2.9E+02 0.0098 23.9 9.0 50 1345-1399 2-53 (66)
300 3k26_A Polycomb protein EED; W 28.2 6.4E+02 0.022 27.8 21.5 245 542-819 85-364 (366)
301 1d7q_A Translation initiation 27.3 1.6E+02 0.0056 29.7 8.0 69 1339-1413 27-96 (143)
302 1h95_A CSD, Y-box binding prot 27.1 2.1E+02 0.0071 25.8 8.0 55 1258-1312 7-65 (79)
303 1got_B GT-beta; complex (GTP-b 26.6 7.1E+02 0.024 27.8 34.2 291 471-820 3-300 (340)
304 3twe_A Alpha4H; unknown functi 26.6 87 0.003 21.4 3.8 23 472-494 3-25 (27)
305 2ytx_A Cold shock domain-conta 26.2 69 0.0024 30.3 4.8 52 1516-1568 16-67 (97)
306 3f3f_A Nucleoporin SEH1; struc 25.9 6.6E+02 0.022 27.2 28.3 210 536-770 17-249 (351)
307 3jrp_A Fusion protein of prote 25.6 7.2E+02 0.024 27.5 27.1 247 537-820 18-286 (379)
308 3i2z_B RNA chaperone, negative 25.4 2E+02 0.0067 25.4 7.4 50 1344-1399 5-58 (71)
309 4dzn_A Coiled-coil peptide CC- 25.1 1.5E+02 0.0051 21.1 4.9 21 471-491 3-23 (33)
310 3m48_A General control protein 23.9 99 0.0034 23.1 4.0 25 471-495 8-32 (33)
311 3a0j_A Cold shock protein; OB- 23.6 2.3E+02 0.0078 25.1 7.5 52 1519-1571 2-55 (73)
312 2yty_A Cold shock domain-conta 23.0 1.7E+02 0.0057 27.1 6.6 53 1085-1139 15-68 (88)
313 2wq1_A General control protein 22.9 1.1E+02 0.0037 22.8 4.0 25 471-495 8-32 (33)
314 4gfh_A DNA topoisomerase 2; to 22.7 94 0.0032 42.4 6.9 58 358-418 994-1060(1177)
315 3dlm_A Histone-lysine N-methyl 22.6 7.4E+02 0.025 26.6 15.5 118 1429-1574 22-185 (213)
316 2ytv_A Cold shock domain-conta 22.6 49 0.0017 30.0 2.9 51 1517-1569 7-58 (79)
317 3bws_A Protein LP49; two-domai 21.7 9.3E+02 0.032 27.4 27.4 102 541-670 180-291 (433)
318 3ec2_A DNA replication protein 21.6 3.9E+02 0.013 27.1 10.4 39 860-898 39-83 (180)
319 2a26_A Calcyclin-binding prote 21.5 1.5E+02 0.0051 24.5 5.2 35 480-514 7-43 (50)
320 3jro_A Fusion protein of prote 21.3 1.3E+03 0.045 29.1 25.7 153 652-821 67-238 (753)
321 3ei3_B DNA damage-binding prot 20.5 9.3E+02 0.032 27.0 27.7 159 633-821 118-282 (383)
322 4ery_A WD repeat-containing pr 20.3 8.4E+02 0.029 26.4 27.2 201 580-821 23-223 (312)
323 1g6p_A Cold shock protein TMCS 20.3 97 0.0033 26.9 4.2 48 1345-1397 1-50 (66)
No 1
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=100.00 E-value=4.4e-176 Score=1620.73 Aligned_cols=684 Identities=32% Similarity=0.559 Sum_probs=625.6
Q ss_pred ccccCCCCccCCCcchhHHHHHHHhcCCCCCCCceeEEEehhhhccCcCCCCcchHHHHHHHHhhcCccccccccCCCCC
Q psy14505 30 VGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNF 109 (1619)
Q Consensus 30 ~~Ralp~~~DGlKp~qRril~~~~~~~~~~~~~~~K~a~~~g~v~~~yhphgd~s~~~~~v~maq~~~~~~pl~~~~Gnf 109 (1619)
++|||||+|||||||||||||+|+++|++++++|+||||+||+|||+||||||+|+|||||||||+||||||||||||||
T Consensus 1 ~~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~gkYHPHGD~SiydaiVrmAQ~fs~r~pLldg~GNF 80 (716)
T 1zvu_A 1 MDRALPFIGDGLKPVQRRIVYAMSELGLNASAKFKKSARTVGDVLGKYHPHGDSACYEAMVLMAQPFSYRYPLVDGQGNW 80 (716)
T ss_dssp -CCCCCBTTTCCCHHHHHHHHHHSTTCC----------CCHHHHHTTTSCTTCHHHHHHHHHHTSTTSCSSCSEEECSCC
T ss_pred CCCCCCchhcCCChHHHHHHHHHhhhCCcCCCCceeeHHHHHHHHHhcCCccHHHHHHHHHHHhhcccccceeeecCCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcc-cccccccccccHHHHHhhccCCCCccccccCCCCCcCCcceecCCCceeeecCCcceeeeeecCCCCCChH
Q psy14505 110 GSIDGDSA-AAMRYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLT 188 (1619)
Q Consensus 110 Gs~~g~~~-aa~RY~~~~ls~~~~~~~~~~d~~~~~~~~n~d~~~~eP~~~~~~~P~~L~ng~~Gia~G~at~ip~~n~~ 188 (1619)
||++||+| |||||||||||++|+.||+++|+++|+|+|||||+.+||+||||+|||||||||+|||||||||||||||.
T Consensus 81 GS~dgd~a~AA~RYte~rLs~ia~~ll~~~d~~tvdf~~n~Dg~~~EP~vlp~~iP~lLvNGa~GIavGmaT~IPphNl~ 160 (716)
T 1zvu_A 81 GAPDDPKSFAAMRYTESRLSKYSELLLSELGQGTADWVPNFDGTLQEPKMLPARLPNILLNGTTGIAVGMATDIPPHNLR 160 (716)
T ss_dssp SSSSSCCCTTSSCGGGEEECGGGHHHHTTTTSSCSCEEECTTSSSEEESSCCCSSCHHHHHCCCSCCSSCSCBCCCBCHH
T ss_pred CCCCCCccccccCceEEcchHHHHHHHhhcCccccccccCCCCCcCCchhccccccHHHHcCCCccccceecCCCCCCHH
Confidence 99999999 99999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCChHHHhccCCCCCCCCceEEe-ccccccccceecccEEEEeEEEEEEEeccCCccEEEEEecCCc
Q psy14505 189 EVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIY-GLSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDELPYQ 267 (1619)
Q Consensus 189 ev~~~~~~~l~~~~~~~~~l~~~~~~p~~p~g~~i~-~~~~~~~~y~~g~G~~~~~~~~~~~~~~~~~~~~i~itelP~~ 267 (1619)
|||+||+++|+||+++.++||+++|||||||||+|. +.+|+.++|+||+|+|++||+|++++ ++|+||||||+
T Consensus 161 Evi~a~~~li~~~~~~~~~l~~~i~gPdFptgG~I~~~~~gI~~aY~tGrG~i~~rg~~~ie~------~~ivITElPy~ 234 (716)
T 1zvu_A 161 EVAQAAIALIDQPKTTLDQLLDIVQGPDYPTEAEIITSRAEIRKIYENGRGSVRMRAVWKKED------GAVVISALPHQ 234 (716)
T ss_dssp HHHHHHHHHHHCTTCCHHHHTTTCCSBCCSSSSEECSCTTHHHHHHHHTEEEEEEECEEEEET------TEEEEEECCTT
T ss_pred HHHHHHHHHhcCCCCCHHHHHhhCCCCCCCCceEEecCchHHHHHhhcCCceEEEEEEEEEEC------CEEEEEeCCCC
Confidence 999999999999999999999999999999999997 58999999999999999999999872 58999999999
Q ss_pred ccHHHHHHHHHHHHhccCcCCcceeecccCC-cceEEEEEecC-CCCHHHHHHHHHhhcccccceeeeEEEE-ECCeeee
Q psy14505 268 VNKKSLLEKISQLVKEKKLECISNLRDESDK-SGMRIVIELKR-NEIPEIVLNKLYKQTQLQNTFGMNMLAL-VNGQPKL 344 (1619)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~-~~~~i~i~lk~-~~~~~~~~~~l~k~t~l~~~~~~n~~~~-~~~~p~~ 344 (1619)
+|+++|+|+|++++++||+++|+|+||||++ +|+||||++|+ +++++.++++|||+|+||++|++||++| .+|+|++
T Consensus 235 v~~~~lie~I~~l~~~kki~~I~d~rDes~~~~gvrivI~lk~~~~~~~~vl~~L~k~T~Lq~sf~~Nm~~l~~~g~p~~ 314 (716)
T 1zvu_A 235 VSGARVLEQIAAQMRNKKLPMVDDLRDESDHENPTRLVIVPRSNRVDMDQVMNHLFATTDLEKSYRINLNMIGLDGRPAV 314 (716)
T ss_dssp CCHHHHHHHHHHHHHTTSCTTEEEEEECCCSSSTTCEEEEESSSSCCHHHHHHHHHHHSTTEEEEEEECEEECTTSCEEE
T ss_pred CCHHHHHHHHHHHHhcCCCccccchhhccCCCCcEEEEEEECccCCCHHHHHHHHHHhcchhheeeceeEEEccCCeeeE
Confidence 9999999999999999999999999999998 59999999998 6999999999999999999999999999 5999999
Q ss_pred eCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHcCCCHHHHHHHHHhhcCCCCchhhhh
Q psy14505 345 LNLKEILYYFILHRKEVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKII 424 (1619)
Q Consensus 345 ~~l~~il~~f~~~R~~~~~rR~~~~l~k~~~r~~ileg~~~a~~~id~vi~iir~s~~~~~a~~~L~~~~~~~~~~~~~~ 424 (1619)
+|+++||++|++||+++|+||++|+|+|+++|+|+|+||++|++|||+||++||+|+++ +.+||++
T Consensus 315 ~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iDeVI~iIR~s~~~---k~~L~~~----------- 380 (716)
T 1zvu_A 315 KNLLEILSEWLVFRRDTVRRRLNYRLEKVLKRLHILEGLLVAFLNIDEVIEIIRNEDEP---KPALMSR----------- 380 (716)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHSSSH---HHHHHHS-----------
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhHHHHHHHHHhcCch---HHHHHHh-----------
Confidence 99999999999999999999999999999999999999999999999999999999986 6889975
Q ss_pred hcccccccccccccccccccCCCccccCHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH
Q psy14505 425 GFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRIIEIIT 504 (1619)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qa~aIL~m~L~~Lt~~e~~~l~~e~~~l~~~i~~l~~iL~~~~~~~~~i~ 504 (1619)
|+|||.||+|||+|||||||+||++||++|+++|+++|++|++||+|+++++++|+
T Consensus 381 ------------------------f~lse~QA~aIL~mrL~rLt~le~~kl~~E~~eL~~~i~~l~~iL~~~~~l~~~i~ 436 (716)
T 1zvu_A 381 ------------------------FGLTETQAEAILELKLRHLAKLEEMKIRGEQSELEKERDQLQGILASERKMNNLLK 436 (716)
T ss_dssp ------------------------TTCCTTHHHHHHTCCGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred ------------------------cCCCHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCCCCcccccc--ccCCCCccccccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCe
Q psy14505 505 DELNIIKNKYGSHKKNIRRSEIIL--NAINPSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDW 582 (1619)
Q Consensus 505 ~el~~ik~~f~~~~~~~RrT~I~~--~~~~~~~~~li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~ 582 (1619)
+||.+++++||+ +|||+|.+ +..+++.+++|++|+++|++|++|||||+ .++|.|.+++++|++|.
T Consensus 437 ~EL~~i~~kygd----~RRT~I~~~~~~~~~~~edli~~e~v~v~ls~~GyiKr~--------~g~~~~~~~~~~k~~D~ 504 (716)
T 1zvu_A 437 KELQADAQAYGD----DRRSPLQEREEAKAMSEHDMLPSEPVTIVLSQMGWVRSA--------KGHDIDAPGLNYKAGDS 504 (716)
T ss_dssp HHHHHHHHHHCC----CCCSCBCCCCCCCCCCSSTTSCCCCCCEEEETTTEEEEC--------CC---------------
T ss_pred HHHHHHHHHhCC----CccccccccccchhcchhhccCCceEEEEEecCCeEecc--------CCCCcCccccccCCCCe
Confidence 999999999999 99999985 34578899999999999999999999994 44556668899999999
Q ss_pred EEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCc
Q psy14505 583 INQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLG 662 (1619)
Q Consensus 583 ~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G 662 (1619)
+.+++.|+|||+||||||.|++|++++|+||++ +++|.|+.+++++++||+|+++++. .++.+++++|++|
T Consensus 505 ~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~--~~~G~~i~~ll~l~~~e~i~~~~~~-------~~~~~l~~~T~~G 575 (716)
T 1zvu_A 505 FKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGEPLTGKLTLPPGATVDHMLME-------SDDQKLLMASDAG 575 (716)
T ss_dssp CCEEECCCSSSCEEEEETTSEEEEECTTTSCCC--C---CBSTTTSCCCTTCCEEEEECC-------CTTCEEEEEBTTS
T ss_pred EEEEEEecCCCEEEEEecCCcEEEEEeeecccc--cccCeeHHhccCCCCCCeEEEEEEe-------cCCceEEEEeCCc
Confidence 999999999999999999999999999999997 5799999999999999999999987 3567899999999
Q ss_pred eEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEe-cCCCeEEEEeCCceEEEEecccccccCCCCCCccceecC-----
Q psy14505 663 IVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALT-DGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLE----- 736 (1619)
Q Consensus 663 ~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~-~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~----- 736 (1619)
++||+++++|.+.+++|+.+++|++||+++.+..+ +++++|+++|++|++++|+..+||++|| ++||++|+|.
T Consensus 576 ~vk~~~l~~~~~~~~~g~~ai~L~~~d~lv~~~~~~~~~~~v~l~t~~g~~lrf~~~~v~~~gr-~~GV~~i~l~~~~~k 654 (716)
T 1zvu_A 576 YGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDASDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAA 654 (716)
T ss_dssp EEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCTTCEEEEEETTSEEEEEESTTSCBCSS-BSCEESSCCCHHHHH
T ss_pred eEEEecHHHhcccCccceEEEeeCCCCEEEEEEEecCCCCEEEEEeCCCeEEEEEHHHCCccCc-ccCeEEEEecccccC
Confidence 99999999999999999999999999999999888 6788999999999999999999999999 9999999999
Q ss_pred -CCCEEEEEEEecCCCCcEEEEEecCc--eeEEecccccccccccccc
Q psy14505 737 -KKQKVIALLVSNNQKQSVLTATENGY--GKRTLIKEYTKHNRGTKGI 781 (1619)
Q Consensus 737 -~~e~Iv~~~~~~~~~~~ll~~T~~G~--~Kr~~l~e~~~~~R~~kG~ 781 (1619)
+||+|+++.++.+ +..+++.+.+|. +|++++++|. ++|+++|+
T Consensus 655 ~~~d~v~~~~~~~~-~~~l~~~~gk~~~~~k~~~~~~~~-~~Rg~~G~ 700 (716)
T 1zvu_A 655 RGEDGLAQLYVLPP-QSTLTIHVGKRKIKLRPEELQKVT-GERGRRGT 700 (716)
T ss_dssp TTSSCEEEEEEECS-SCCEEEEETTEEEEECHHHHTTSB-CCTTSCCE
T ss_pred CCCCEEEEEEEecC-CCeEEEEECCcccccccchhhHhc-cCCCCCCC
Confidence 9999999988765 445666665555 6666999997 78999998
No 2
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=100.00 E-value=3.3e-152 Score=1342.85 Aligned_cols=492 Identities=54% Similarity=0.933 Sum_probs=451.8
Q ss_pred cccCCCCccCCCcchhHHHHHHHhcCCCCCCCceeEEEehhhhccCcCCCCcchHHHHHHHHhhcCccccccccCCCCCC
Q psy14505 31 GRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVDGQGNFG 110 (1619)
Q Consensus 31 ~Ralp~~~DGlKp~qRril~~~~~~~~~~~~~~~K~a~~~g~v~~~yhphgd~s~~~~~v~maq~~~~~~pl~~~~GnfG 110 (1619)
.|||||+|||||||||||||||+++|++++++|+||||+||+|||+||||||+|+|||||||||+|||||||+|||||||
T Consensus 1 ~RALPdvrDGLKPvqRRILyam~~~~l~~~k~~~KsArvvG~V~gkYHPHGD~SiydaiVrMAQdFs~r~pLvdgqGNFG 80 (500)
T 3lpx_A 1 MRALPDVRDGLKPVHRRVLFAMDVLGNDWNKAYKKSARVVGDVIGKYHPHGDTAVYDTIVRMAQPFSLRYMLVDGQGNFG 80 (500)
T ss_dssp --CCCBTTTCCCHHHHHHHHHHHHTTCCSSSCCEEHHHHHHHHHHHTCCCCSSHHHHHHHHTTCTTTCSSCSEEEESCCC
T ss_pred CCCCCchhcCCCchhhHHHHHHHHhCCCCCCCceeEeeeHHhHHhccCCCcHHHHHHHHHHHhhhhhccccccccCCCCC
Confidence 39999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCcccccccccccccHHHHHhhccCCCCccccccCCCCCcCCcceecCCCceeeecCCcceeeeeecCCCCCChHHH
Q psy14505 111 SIDGDSAAAMRYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPPHNLTEV 190 (1619)
Q Consensus 111 s~~g~~~aa~RY~~~~ls~~~~~~~~~~d~~~~~~~~n~d~~~~eP~~~~~~~P~~L~ng~~Gia~G~at~ip~~n~~ev 190 (1619)
|+|||+||||||||||||++|+.||+++|++||+|+|||||+++||+||||+|||||||||+|||||||||||||||.||
T Consensus 81 S~dGd~aAAmRYteaRLs~ia~~ll~did~~tvdf~~NyDg~~~EP~vlp~~iP~lLvNGs~GIAvGmATnIPpHNl~EV 160 (500)
T 3lpx_A 81 SVDGDSAAAMRYTEIRMSKIAHSILADLDKETVDFVPNYDGTEHIPAVMPTRVPNLLVNGTSGIAVGMATNIPPHNLTEV 160 (500)
T ss_dssp CTTCCCCCCGGGCEEEECHHHHTTSTTTTTTCSCEEECTTSSSEEESSCCCSSCHHHHHCC-------CCBCCCCCHHHH
T ss_pred CCCCCcccchhhHhHHHHHHHHHHHhhcCcccccCccCCCccccCHhhcCccccHhhccCCCccccceeccCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCChHHHhccCCCCCCCCceEEeccccccccceecccEEEEeEEEEEEEeccCCccEEEEEecCCcccH
Q psy14505 191 IDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAIIIDELPYQVNK 270 (1619)
Q Consensus 191 ~~~~~~~l~~~~~~~~~l~~~~~~p~~p~g~~i~~~~~~~~~y~~g~G~~~~~~~~~~~~~~~~~~~~i~itelP~~~~~ 270 (1619)
|+||+++|+||++++++||+++|||||||||+|.|++|+.++|+||+|++++||+|++|+..+.++++|+||||||++|+
T Consensus 161 ida~~~li~~~~~~~~eLm~~i~gPDfPtgg~i~g~~gi~~~y~tGrG~i~~ra~~~ie~~~~~~~~~IvITElPy~v~k 240 (500)
T 3lpx_A 161 INACLALIDNSELTFEEILEHIPGPDFPTAGIISGRAGIEEAYRTGRGKIKIRARASIDVHETTGKETIIVHELPYQVNK 240 (500)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHCCSCCCTTCCEECCHHHHHHHHHHSEEEEEEECEEEEEECTTTCCEEEEEEECCTTCCH
T ss_pred HHHHHHHhcCCCCCHHHHHhcCCCCCCCCCceEeCccchHHHhhcCCceEEEEEEEEEEecccCCCceEEEEecCCccCH
Confidence 99999999999999999999999999999999999999999999999999999999998643457889999999999999
Q ss_pred HHHHHHHHHHHhccCcCCcceeecccCCcceEEEEEecCCCCHHHHHHHHHhhcccccceeeeEEEEECCeeeeeCHHHH
Q psy14505 271 KSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVNGQPKLLNLKEI 350 (1619)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~i~~~~d~s~~~~~~i~i~lk~~~~~~~~~~~l~k~t~l~~~~~~n~~~~~~~~p~~~~l~~i 350 (1619)
++|+|+|++++++|+++||+|||||||++|+||||++|++++++.++++|||+|+||+||++||++|++|+|+++|+++|
T Consensus 241 ~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~~~~l~~L~k~T~Lq~sf~~Nm~al~~g~pk~~~l~ei 320 (500)
T 3lpx_A 241 ARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKLTQMQVSFGLNMVALTNGQPKIFNIKEM 320 (500)
T ss_dssp HHHHHHHHHHHHTTSSCSEEEEEECCCSSCCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEEECEEESSSSEEECCHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccchhcCCCCceEEEEEECCCCCHHHHHHHHHHhcCCceeeeeeEEEEECCEeEECCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHcCCCHHHHHHHHHhhcCCCCchhhhhhccccc
Q psy14505 351 LYYFILHRKEVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKN 430 (1619)
Q Consensus 351 l~~f~~~R~~~~~rR~~~~l~k~~~r~~ileg~~~a~~~id~vi~iir~s~~~~~a~~~L~~~~~~~~~~~~~~~~~~~~ 430 (1619)
|++|++||+++|+||++|+|+|+++|+||||||++|++|||+||++||+|+++++||++||+++|++..+..+++..++.
T Consensus 321 L~~f~~~R~evv~rR~~~~L~ka~~R~hileGl~~a~~~iDevI~iIR~s~~~~~Ak~~L~~~~w~~~~~~~~~~~~~~~ 400 (500)
T 3lpx_A 321 LEAFVLHRREVVTRRTIFELRKARDRAHILEGLSIALANIDPIIEMIKNSNNRKESEEKLISQGWELGNVANMLSEAGND 400 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHTTTTTCSSHHHHHHHHHSSCCCCC-----------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHhcccccchhhhhhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888877666
Q ss_pred ccccccccccccccCCCccccCHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Q psy14505 431 YNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRIIEIITDELNII 510 (1619)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~~~~~Qa~aIL~m~L~~Lt~~e~~~l~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i 510 (1619)
..+++.+...++. .+..|+||+.||+|||+|||||||+||+++|.+|+++|.++|++|++||+|+++++++|++||.++
T Consensus 401 ~~~~~~~~~~~~~-~~~~f~lse~Qa~aIl~mrL~rLt~le~~ki~~E~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~i 479 (500)
T 3lpx_A 401 AARPEWLEPEYGI-RDGLYYLTAEQAKAIVDLQLYKLSGMEHDKILSEYKALLDLIAELMHILATPARLMEVICEELVAI 479 (500)
T ss_dssp TTSCTTCCCC-----------CHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred ccccccccccccc-cccccCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 6666666554443 345799999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCCCCCccccc
Q psy14505 511 KNKYGSHKKNIRRSEII 527 (1619)
Q Consensus 511 k~~f~~~~~~~RrT~I~ 527 (1619)
+++||+ +|||+|.
T Consensus 480 ~~~~g~----~RrT~i~ 492 (500)
T 3lpx_A 480 RDEFGD----ERRTEIT 492 (500)
T ss_dssp HHHHCC----CCCSEEC
T ss_pred HHHhCC----CCCceee
Confidence 999999 9999994
No 3
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=100.00 E-value=4.8e-152 Score=1365.36 Aligned_cols=490 Identities=44% Similarity=0.761 Sum_probs=434.2
Q ss_pred CchhhccceeccHHHHHHHHHHhhhhhhhccccCCCCccCCCcchhHHHHHHHhcCCCCCCCceeEEEehhhhccCcCCC
Q psy14505 1 MNQFAKEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPH 80 (1619)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~ya~~~i~~Ralp~~~DGlKp~qRril~~~~~~~~~~~~~~~K~a~~~g~v~~~yhph 80 (1619)
|..+.+++.+++|+++|+++|++||||||++|||||+|||||||||||||||+++|++++++|+||||+||+|||+||||
T Consensus 21 ~~~~~~~i~~~~i~~~~~~~yl~YamsvI~~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~gkYHPH 100 (514)
T 2inr_A 21 MLEVSEIIQDLSLEDVLGDRFGRYSKYIIQERALPDVRDGLKPVQRRILYAMYSSGNTHDKNFRKSAKTVGDVIGQYHPH 100 (514)
T ss_dssp --------------------------------CCCBTTTCCCHHHHHHHHHHHHHTCCSSSCCEEHHHHHHHHHHHTCC-
T ss_pred cccccccceeccHHHHHHHHHHHHHHHHhhcccCCchhhCCCcchhhHHHHHHHhCCCCCCCceeeeeeHhhHHhcCCCc
Confidence 44455679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcchHHHHHHHHhhcCccccccccCCCCCCCCCCCcccccccccccccHHHHHhhccCCCCccccccCCCCCcCCcceec
Q psy14505 81 GDVSIYDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLP 160 (1619)
Q Consensus 81 gd~s~~~~~v~maq~~~~~~pl~~~~GnfGs~~g~~~aa~RY~~~~ls~~~~~~~~~~d~~~~~~~~n~d~~~~eP~~~~ 160 (1619)
||+|+|||||||||+||||||||||||||||+|||+||||||||||||++|++||+++|++||+|+|||||++.||+|||
T Consensus 101 GD~SiydaiVrMAQdfs~r~pLldgqGNFGS~dGd~aAA~RYte~rLs~ia~~ll~did~~tvdf~~nyDg~~~EP~vlp 180 (514)
T 2inr_A 101 GDSSVYEAMVRLSQDWKLRHVLIEMHGNNGSIDNDPPAAMRYTEAKLSLLAEELLRDINKETVSFIPNYDDTTLEPMVLP 180 (514)
T ss_dssp --CHHHHHHHHTTCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECTTHHHHSTTTTSSCSCEEECTTSSSEEESSCC
T ss_pred cHHHHHHHHHHHhhhhhhCceeEecCCCCCCCCCCCCCCcCCeEEechHHHHHHHhhcCcccccCCcCCCCCcCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceeeecCCcceeeeeecCCCCCChHHHHHHHHHHhcCCCCChHHHhccCCCCCCCCceEEeccccccccceecccEE
Q psy14505 161 TRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240 (1619)
Q Consensus 161 ~~~P~~L~ng~~Gia~G~at~ip~~n~~ev~~~~~~~l~~~~~~~~~l~~~~~~p~~p~g~~i~~~~~~~~~y~~g~G~~ 240 (1619)
|+|||||||||+|||||||||||||||.|||+||+++|+||++++++||+++|||||||||+|.|.+|+.++|+||+|+|
T Consensus 181 ~~iP~lLvNGs~GIavGmATnIPphNl~Evi~a~~~li~~~~~~~~~l~~~i~GPDFPtGgii~~~~gi~~~y~tGrG~i 260 (514)
T 2inr_A 181 SRFPNLLVNGSTGISAGYATDIPPHNLAEVIQATLKYIDNPDITVNQLMKYIKGPDFPTGGIIQGIDGIKKAYESGKGRI 260 (514)
T ss_dssp CSSCHHHHHCEECC--CCCCEECCBCHHHHHHHHHHHHHCTTCCHHHHTTTCCSBCCTTCCEEECHHHHHHHHHHSEEEE
T ss_pred ccccHHHhcCCCceecceecCCCCCCHHHHHHHHHHHhcCCCCCHHHHHhhCcCCCCCCCcEEECchhhHHHhhcCCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeEEEEEEEeccCCccEEEEEecCCcccHHHHHHHHHHHHhccCcCCcceeecccCCcceEEEEEecCCCCHHHHHHHH
Q psy14505 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKL 320 (1619)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~i~itelP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~~~~~i~i~lk~~~~~~~~~~~l 320 (1619)
++||+|++++. +.++++|+||||||++|+++|+|+|++++++||++||+||||+||++|+||||+||++++++.++++|
T Consensus 261 ~~rg~~~ie~~-~~~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~e~vl~~L 339 (514)
T 2inr_A 261 IVRSKVEEETL-RNGRKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYL 339 (514)
T ss_dssp EEECEEEECC-----CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHH
T ss_pred EEEEEEEEEec-CCCccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCCCceEEEEEECCCcCHHHHHHHH
Confidence 99999999853 34578999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccceeeeEEEEECCeeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHcC
Q psy14505 321 YKQTQLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRST 400 (1619)
Q Consensus 321 ~k~t~l~~~~~~n~~~~~~~~p~~~~l~~il~~f~~~R~~~~~rR~~~~l~k~~~r~~ileg~~~a~~~id~vi~iir~s 400 (1619)
||+|+||++|++||++|++|+|+++|+++||++|++||+++|+||++|+|+++++|+|+|+||++|+++||++|++||+|
T Consensus 340 ~k~t~Lq~s~~~Nm~al~~g~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s 419 (514)
T 2inr_A 340 YKNSDLQISYNFNMVAISDGRPKLMGIRQIIDSYLNHQIEVVANRTKFELDNAEKRMHIVEGLIKALSILDKVIELIRSS 419 (514)
T ss_dssp TTSSTTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHHHC
T ss_pred HHhcCceeeeeeeEEEeeCCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHhhcCCCCchhhhhhcccccccccccccccccccCCCccccCHHHHHHhhccchhhcchHHHHHHHHHHH
Q psy14505 401 STPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYE 480 (1619)
Q Consensus 401 ~~~~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qa~aIL~m~L~~Lt~~e~~~l~~e~~ 480 (1619)
+++++|++.||+. |+||+.||+|||+|||||||++|++||.+|++
T Consensus 420 ~~~~~a~~~L~~~-----------------------------------f~lse~qa~~IL~m~L~rLT~~e~~kl~~E~~ 464 (514)
T 2inr_A 420 KNKRDAKENLIEV-----------------------------------YEFTEEQAEAIVMLQLYRLTNTDIVALEGEHK 464 (514)
T ss_dssp CSHHHHHHHHHTT-----------------------------------SSCCHHHHHHHHTCCGGGGSTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHh-----------------------------------cCCCHHHHHHHHhchHHHHhhHHHHHHHHHHH
Confidence 9999999999975 89999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccccc
Q psy14505 481 NVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNA 530 (1619)
Q Consensus 481 ~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~~f~~~~~~~RrT~I~~~~ 530 (1619)
+|+++|++|+.||+|+.+++++|++||.+++++||+ +|||+|..+.
T Consensus 465 ~l~~ei~~l~~iL~~~~~~~~~i~~el~~i~~~yg~----~RrT~i~~~~ 510 (514)
T 2inr_A 465 ELEALIKQLRHILDNHDALLNVIKEELNEIKKKFKS----ERLSLIEAEI 510 (514)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC----CCCCEEESSC
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC----CCCccccccc
Confidence 999999999999999999999999999999999999 9999997653
No 4
>2nov_A DNA topoisomerase 4 subunit A; protein, PARC, TOPO IV, GRAM-positive bacteria, quinolone target, DNA binding, DNA cleavage; HET: DNA; 2.67A {Streptococcus pneumoniae} PDB: 3foe_A* 3fof_A* 3k9f_A* 3ksa_A* 3ksb_A* 3ltn_A* 3rad_A* 3rae_A* 3raf_A*
Probab=100.00 E-value=4.9e-152 Score=1363.28 Aligned_cols=485 Identities=42% Similarity=0.736 Sum_probs=434.1
Q ss_pred cceeccHHHHHHHHHHhhhhhhhccccCCCCccCCCcchhHHHHHHHhcCCCCCCCceeEEEehhhhccCcCCCCcchHH
Q psy14505 7 EVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIY 86 (1619)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ya~~~i~~Ralp~~~DGlKp~qRril~~~~~~~~~~~~~~~K~a~~~g~v~~~yhphgd~s~~ 86 (1619)
+|.+++|+++|+++|++||||||++|||||+|||||||||||||||+++|++++++|+||||+||+|||+||||||+|+|
T Consensus 3 ~i~~~~i~~~~~~~yl~YamsvI~~RAlPdvrDGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~gkYHPHGD~Siy 82 (496)
T 2nov_A 3 NIQNMSLEDIMGERFGRYSKYIIQDRALPDIRDGLKPVQRRILYSMNKDSNTFDKSYRKSAKSVGNIMGNFHPHGDSSIY 82 (496)
T ss_dssp --------------------------CCCCTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSCSTTTH
T ss_pred CceeccHHHHHHHHHHHHHHHHHhcccCCchhcCCCcchhHHHHHHHHhCCCCCCCceeeeeeHhhHHhcCCCccHHHHH
Confidence 58899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccccCCCCCCCCCCCcccccccccccccHHHHHhhccCCCCccccccCCCCCcCCcceecCCCcee
Q psy14505 87 DALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNL 166 (1619)
Q Consensus 87 ~~~v~maq~~~~~~pl~~~~GnfGs~~g~~~aa~RY~~~~ls~~~~~~~~~~d~~~~~~~~n~d~~~~eP~~~~~~~P~~ 166 (1619)
||||||||+||||||||||||||||+|||+||||||||||||++|+.||+++|++||+|+|||||++.||+||||+||||
T Consensus 83 daiVrMAQdfs~r~pLldgqGNFGS~dGd~aAA~RYte~rLs~ia~~ll~d~d~~tvdf~~nyDg~~~EP~vlp~~iP~l 162 (496)
T 2nov_A 83 DAMVRMSQNWKNREILVEMHGNNGSMDGDPPAAMRYTEARLSEIAGYLLQDIEKKTVPFAWNFDDTEKEPTVLPAAFPNL 162 (496)
T ss_dssp HHHHHTTCTTTSSSCSEEEESCSCCSSSCCCCCTTTCEEEECHHHHTTSTTCCCCCSCEEECSSSSSEEESSCCCSSCHH
T ss_pred HHHHHHhhhhhcCceeecCCCCCCCCCCCcccccCceEEechHHHHHHhhhcccccccCCcCCCCCcCCCeecCccCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCcceeeeeecCCCCCChHHHHHHHHHHhcCCCCChHHHhccCCCCCCCCceEEeccccccccceecccEEEEeEEE
Q psy14505 167 LINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKT 246 (1619)
Q Consensus 167 L~ng~~Gia~G~at~ip~~n~~ev~~~~~~~l~~~~~~~~~l~~~~~~p~~p~g~~i~~~~~~~~~y~~g~G~~~~~~~~ 246 (1619)
|||||+|||||||||||||||.|||+||+++|+||+++.++||+++|||||||||+|.|.+|+.++|+||+|++++||+|
T Consensus 163 LvNGs~GIavGmAT~IPphNl~Evi~a~~~~i~~~~~~~~~l~~~i~gPDFPtGgii~~~~gi~~~y~tGrG~~~~rg~~ 242 (496)
T 2nov_A 163 LVNGSTGISAGYATDIPPHNLAEVIDAAVYMIDHPTAKIDKLMEFLPGPDFPTGAIIQGRDEIKKAYETGKGRVVVRSKT 242 (496)
T ss_dssp HHHCEECCC-CCCCEECCCCHHHHHHHHHHHHHCTTCCHHHHTTTCCSCCCTTCCEECCHHHHHHHHHHSEEECCEECEE
T ss_pred HhcCCCchhcccccCCCCCCHHHHHHHHHHHhcCCCCChHHHHhhccCCCCCCCCEEeCchHHHHHhhcCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeccCCccEEEEEecCCcccHHHHHHHHHHHHhccCcCCcceeecccCCcceEEEEEecCCCCHHHHHHHHHhhccc
Q psy14505 247 HIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKLYKQTQL 326 (1619)
Q Consensus 247 ~~~~~~~~~~~~i~itelP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~~~~~i~i~lk~~~~~~~~~~~l~k~t~l 326 (1619)
++++. +.|+++|+||||||++|+++|+|+|++++++||++||+||||+||++|+||||+||++++++.++++|||+|+|
T Consensus 243 ~ie~~-~~g~~~IvITElPy~v~~~~lie~I~~lv~~kki~~I~d~rDesd~~gvrivI~lk~~~~~~~vl~~L~k~t~L 321 (496)
T 2nov_A 243 EIEKL-KGGKEQIVITEIPYEINKANLVKKIDDVRVNNKVAGIAEVRDESDRDGLRIAIELKKDANTELVLNYLFKYTDL 321 (496)
T ss_dssp EEEEC-STTCEEEEEEECCTTCCHHHHHHHTTHHHHTTSCC---CCEEC-----CCEEC----CCCCTTHHHHHHHSSTT
T ss_pred EEEec-CCCCCEEEEEeCCCCCcHHHHHHHHHHHHhcCCcCccchhhhcCCCCceEEEEEECCCCCHHHHHHHHHHhcCc
Confidence 99864 35678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeeeEEEEECCeeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHcCCCHHHH
Q psy14505 327 QNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEA 406 (1619)
Q Consensus 327 ~~~~~~n~~~~~~~~p~~~~l~~il~~f~~~R~~~~~rR~~~~l~k~~~r~~ileg~~~a~~~id~vi~iir~s~~~~~a 406 (1619)
|+||++||++|++|+|+++|+++||++|++||+++|+||++|+|+++++|+|+|+|+++|+++||++|++||+|+++++|
T Consensus 322 q~s~~~Nm~al~~g~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~id~vI~iIr~s~~~~~a 401 (496)
T 2nov_A 322 QINYNFNMVAIDNFTPRQVGIVPILSSYIAHRREVILARSRFDKEKAEKRLHIVEGLIRVISILDEVIALIRASENKADA 401 (496)
T ss_dssp EECCEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSHHHHHHHHTTSSSHHHH
T ss_pred ceeeeeEEEEEeCCeEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCCCchhhhhhcccccccccccccccccccCCCccccCHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHH
Q psy14505 407 KNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKV 486 (1619)
Q Consensus 407 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qa~aIL~m~L~~Lt~~e~~~l~~e~~~l~~~i 486 (1619)
++.||+. |+||+.||+|||+|||||||++|++||.+|+++|+++|
T Consensus 402 ~~~L~~~-----------------------------------f~lse~qa~~IL~m~L~rLt~~e~~kl~~E~~~l~~~i 446 (496)
T 2nov_A 402 KENLKVS-----------------------------------YDFTEEQAEAIVTLQLYRLTNTDVVVLQEEEAELREKI 446 (496)
T ss_dssp HSSCCC------------------------------------CCCCHHHHHHHHTCBGGGGSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh-----------------------------------cCCCHHHHHHHHhChHHHHhhHHHHHHHHHHHHHHHHH
Confidence 9988864 89999999999999999999999999999999999999
Q ss_pred HHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCCCCCccccccccC
Q psy14505 487 IDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIILNAI 531 (1619)
Q Consensus 487 ~~l~~iL~~~~~~~~~i~~el~~ik~~f~~~~~~~RrT~I~~~~~ 531 (1619)
++|+.||+|+.+++++|++||.+++++||+ +|||+|.....
T Consensus 447 ~~l~~iL~~~~~~~~~i~~el~~i~~~y~~----~RrT~i~~~~~ 487 (496)
T 2nov_A 447 AMLAAIIGDERTMYNLMKKELREVKKKFAT----PRLSSLEDTAK 487 (496)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHHHHCC----CCCSBC-----
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHHhCC----CCCceeecchh
Confidence 999999999999999999999999999999 99999976543
No 5
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=100.00 E-value=2.3e-148 Score=1317.81 Aligned_cols=463 Identities=52% Similarity=0.854 Sum_probs=451.8
Q ss_pred hhhhhccccCCCCccCCCcchhHHHHHHHhcCCCCCCCceeEEEehhhhccCcCCCCcchHHHHHHHHhhcCcccccccc
Q psy14505 25 AMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIYDALVRMAQSFSLRCTLVD 104 (1619)
Q Consensus 25 a~~~i~~Ralp~~~DGlKp~qRril~~~~~~~~~~~~~~~K~a~~~g~v~~~yhphgd~s~~~~~v~maq~~~~~~pl~~ 104 (1619)
-||||++|||||+|||||||||||||||+++|++++++|+||||+||+|||+||||||+|+|||||||||+|++||||+|
T Consensus 2 ~msVI~~RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~gkYHPHGD~SiydaiVrmAQ~f~~r~pLld 81 (470)
T 3ilw_A 2 NASVIVGRALPEVRDGLKPVHRRVLYAMFDSGFRPDRSHAKSARSVAETMGNYHPHGDASIYDSLVRMAQPWSLRYPLVD 81 (470)
T ss_dssp -----CTTTSCBTTTCCCHHHHHHHHHHHHHTCCTTSCCEEHHHHHHHHHHHTCCCCSTHHHHHHHHHHCTTTCSSCSEE
T ss_pred CceEEccccCCchhcCCCchhhHHHHHHHHhCCCCCCCeeehHHHHHHHHHhhCCCcHHHHHHHHHHHhhHhhcCcceee
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCcccccccccccccHHHHHhhccCCCCccccccCCCCCcCCcceecCCCceeeecCCcceeeeeecCCCC
Q psy14505 105 GQGNFGSIDGDSAAAMRYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPNLLINGSSGIAVGMATNIPP 184 (1619)
Q Consensus 105 ~~GnfGs~~g~~~aa~RY~~~~ls~~~~~~~~~~d~~~~~~~~n~d~~~~eP~~~~~~~P~~L~ng~~Gia~G~at~ip~ 184 (1619)
|||||||+|||+||||||||||||++|+.||+++|++||+|+|||||+..||+||||+|||||||||+||||||||||||
T Consensus 82 gqGNFGS~~Gd~aAA~RYte~rLs~ia~~ll~d~d~~tvdf~~nyDg~~~EP~vlp~~iP~lLvNGs~GIavGmAT~IPp 161 (470)
T 3ilw_A 82 GQGNFGSPGNDPPAAMRYTEARLTPLAMEMLREIDEETVDFIPNYDGRVQEPTVLPSRFPNLLANGSGGIAVGMATNIPP 161 (470)
T ss_dssp EESCCCCSSSCCCCCTTSCEEEECHHHHHHHTTGGGTCSCEEECTTSSSEEESSCCCSSCHHHHHCEECSSTTCSCEECC
T ss_pred cCCCCCCCCCCccccccceeeehhHHHHHHHHhcCcchhcCccCcCCCccCCCcccccccHHHhcCCCccccceecCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHhcCCCC----ChHHHhccCCCCCCCCceEEeccccccccceecccEEEEeEEEEEEEeccCCccEEE
Q psy14505 185 HNLTEVIDGVLYVLHNPEC----SINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAKTHIEEFNRENRTAII 260 (1619)
Q Consensus 185 ~n~~ev~~~~~~~l~~~~~----~~~~l~~~~~~p~~p~g~~i~~~~~~~~~y~~g~G~~~~~~~~~~~~~~~~~~~~i~ 260 (1619)
|||.|||+||+++|+||++ ++++||+++|||||||||+|.|++|+.++|+||+|++++||+|++|+. +.++++|+
T Consensus 162 hNl~Evi~a~~~~i~~~~~~~~~~~~~l~~~i~gPDFPTGG~I~g~~gi~~~y~tGrG~i~~rg~~~ie~~-~~~~~~iv 240 (470)
T 3ilw_A 162 HNLRELADAVFWALENHDADEEETLAAVMGRVKGPDFPTAGLIVGSQGTADAYKTGRGSIRMRGVVEVEED-SRGRTSLV 240 (470)
T ss_dssp CCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHCCSCCCTTCCEEECSHHHHHHHHHSEEEEEEECEEEEEEC-TTCCEEEE
T ss_pred CCHHHHHHHHHHHhcCCCCCcccCHHHHhhcccCCCCCCCcEEECccchHHHHhcCCceEEEEEEEEEEec-cCCCCEEE
Confidence 9999999999999999999 889999999999999999999999999999999999999999999864 35788999
Q ss_pred EEecCCcccHHHHHHHHHHHHhccCcCCcceeecc-cCCcceEEEEEecCCCCHHHHHHHHHhhcccccceeeeEEEEEC
Q psy14505 261 IDELPYQVNKKSLLEKISQLVKEKKLECISNLRDE-SDKSGMRIVIELKRNEIPEIVLNKLYKQTQLQNTFGMNMLALVN 339 (1619)
Q Consensus 261 itelP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~-s~~~~~~i~i~lk~~~~~~~~~~~l~k~t~l~~~~~~n~~~~~~ 339 (1619)
||||||++|+++|+|+|++++++|+++||+|+||| ||++|+||||++|++++++.++++|||+|+||++|++||++|+|
T Consensus 241 ItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~~gvrivI~lk~~~~~~~~l~~L~k~t~Lq~s~~~Nm~al~~ 320 (470)
T 3ilw_A 241 ITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKHTQLQTSFGANMLAIVD 320 (470)
T ss_dssp EEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEEECTTSCHHHHHHHHHHHSTTEEEEEEECEEEET
T ss_pred EEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCCCceEEEEEECCCCCHHHHHHHHHHhccchheeceeeeEEEC
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred CeeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHcCCCHHHHHHHHHhhcCCCCc
Q psy14505 340 GQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPD 419 (1619)
Q Consensus 340 ~~p~~~~l~~il~~f~~~R~~~~~rR~~~~l~k~~~r~~ileg~~~a~~~id~vi~iir~s~~~~~a~~~L~~~~~~~~~ 419 (1619)
|+|+++|+++||++|++||+++|+||++|+|+|+++|+||||||++|+++||+||++||+|+++++|++.||++
T Consensus 321 g~p~~~~l~eiL~~f~~~R~~~~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~~~a~~~L~~~------ 394 (470)
T 3ilw_A 321 GVPRTLRLDQLIRYYVDHQLDVIVRRTTYRLRKANERAHILRGLVKALDALDEVIALIRASETVDIARAGLIEL------ 394 (470)
T ss_dssp TEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHH------
T ss_pred CeeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHh------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred hhhhhhcccccccccccccccccccCCCccccCHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Q psy14505 420 VSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRI 499 (1619)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qa~aIL~m~L~~Lt~~e~~~l~~e~~~l~~~i~~l~~iL~~~~~~ 499 (1619)
|+||+.||+|||+|||||||++|++||++|+++|+++|++|+.||+|++++
T Consensus 395 -----------------------------f~lse~Qa~aIl~mrL~rLt~le~~kl~~E~~~l~~~i~~l~~iL~~~~~~ 445 (470)
T 3ilw_A 395 -----------------------------LDIDEIQAQAILDMQLRRLAALERQRIIDDLAKIEAEIADLEDILAKPERQ 445 (470)
T ss_dssp -----------------------------HTCCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred -----------------------------cCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCCCCccccc
Q psy14505 500 IEIITDELNIIKNKYGSHKKNIRRSEII 527 (1619)
Q Consensus 500 ~~~i~~el~~ik~~f~~~~~~~RrT~I~ 527 (1619)
+++|++||.+++++||+ +|||+|+
T Consensus 446 ~~~i~~el~~i~~~yg~----~RrT~i~ 469 (470)
T 3ilw_A 446 RGIVRDELAEIVDRHGD----DRRTRII 469 (470)
T ss_dssp HHHHHHHHHHHHHHHCC----CCCSEEE
T ss_pred HHHHHHHHHHHHHHhCC----CCCCcCC
Confidence 99999999999999999 9999985
No 6
>2xcs_B DNA gyrase subunit B, DNA gyrase subunit A; isomerase, type IIA topoisomerase; HET: DNA 5UA RXV; 2.10A {Staphylococcus aureus} PDB: 2xct_B* 2xcr_B* 2xcq_A* 2xco_A*
Probab=100.00 E-value=1.5e-146 Score=1353.25 Aligned_cols=483 Identities=54% Similarity=0.907 Sum_probs=472.1
Q ss_pred ccceeccHHHHHHHHHHhhhhhhhccccCCCCccCCCcchhHHHHHHHhcCCCCCCCceeEEEehhhhccCcCCCCcchH
Q psy14505 6 KEVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSI 85 (1619)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~ya~~~i~~Ralp~~~DGlKp~qRril~~~~~~~~~~~~~~~K~a~~~g~v~~~yhphgd~s~ 85 (1619)
+++.+++++++|+++|++||||||++|||||+|||||||||||||+|+++|++++++|+||||+||+|||+||||||+|+
T Consensus 208 ~~i~~~~i~~~~~~~~l~Yamsvi~~RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~Ar~vG~V~gkYHPHGD~Si 287 (692)
T 2xcs_B 208 SRINERNITSEMRESFLDYAMSVIVARALPDVRDGLKPVHRRILYGLNEQGMTPDKSYKKSARIVGDVMGKYHPHGDSSI 287 (692)
T ss_dssp ----EEEHHHHHHHHHHHHHHHHHHHTSSCBTTTCCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSCHHHH
T ss_pred cceeeeeHHHHHHHHHHHHHHHhhhcccCCchhhcCCchhHHHHHHHHHhCCCCCCCceeehhhhHHHHhccCCccHHHH
Confidence 36889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCccccccccCCCCCCCCCCCcccccccccccccHHHHHhhccCCCCccccccCCCCCcCCcceecCCCce
Q psy14505 86 YDALVRMAQSFSLRCTLVDGQGNFGSIDGDSAAAMRYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPN 165 (1619)
Q Consensus 86 ~~~~v~maq~~~~~~pl~~~~GnfGs~~g~~~aa~RY~~~~ls~~~~~~~~~~d~~~~~~~~n~d~~~~eP~~~~~~~P~ 165 (1619)
|||||||||+||||||||||||||||+|||+||||||||||||++|+.||+++|++||+|+|||||+.+||+||||+|||
T Consensus 288 ydaiVrmAQ~fs~r~pLldg~GNFGS~~Gd~aAA~RYte~rLs~ia~~ll~d~d~~tvdf~~nyDg~~~EP~vlp~~iP~ 367 (692)
T 2xcs_B 288 YEAMVRMAQDFSYRYPLVDGQGNFGSMDGDGAAAMRFTEARMTKITLELLRDINKDTIDFIDNYDGNEREPSVLPARFPN 367 (692)
T ss_dssp HHHHHHHHCTTTCSSCSEEEESCCCCTTCCCCCCTTTCEEEECHHHHHHHTTTTTTCSCEEECTTSSCEEESSCCCSSCH
T ss_pred HHHHHHHhhccccccccccCCCCCCCCCCCccccccceeecHHHHHHHHhhhcccccccCCcCCCCCccChhhccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcceeeeeecCCCCCChHHHHHHHHHHhcCCCCChHHHhccCCCCCCCCceEEeccccccccceecccEEEEeEE
Q psy14505 166 LLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVIIRAK 245 (1619)
Q Consensus 166 ~L~ng~~Gia~G~at~ip~~n~~ev~~~~~~~l~~~~~~~~~l~~~~~~p~~p~g~~i~~~~~~~~~y~~g~G~~~~~~~ 245 (1619)
||||||+|||||||||||||||.|||+||+++|+||+++.++||+++|||||||||+|.|++|++++|+||+|++++||+
T Consensus 368 lLvNGa~GIavGmaT~IPphNl~Evi~a~~~~i~~~~~~~~~l~~~i~gPDFPTGg~I~g~~gi~~~y~tGrG~~~~rg~ 447 (692)
T 2xcs_B 368 LLANGASGIAVGMATNIPPHNLTELINGVLSLSKNPDISIAELMEDIEGPDFPTAGLILGKSGIRRAYETGRGSIQMRSR 447 (692)
T ss_dssp HHHHCEEEECSSCEEEECCBCHHHHHHHHHHHHTCTTCCHHHHTTTCCSBCCTTCCEEECSHHHHHHHHHSEEEEEEECE
T ss_pred HHHcCCCccccceecCCCCCCHHHHHHHHHHHhcCCCCCHHHHHhhCCCCCCCCCceEeCCcceeeeeecCCceEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeccCCccEEEEEecCCcccHHHHHHHHHHHHhccCcCCcceeecc-cCCcceEEEEEecCCCCHHHHHHHHHhhc
Q psy14505 246 THIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDE-SDKSGMRIVIELKRNEIPEIVLNKLYKQT 324 (1619)
Q Consensus 246 ~~~~~~~~~~~~~i~itelP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~-s~~~~~~i~i~lk~~~~~~~~~~~l~k~t 324 (1619)
+++++. +.++++|+||||||++|+++|+|+|++++++|+++||+||||+ ||++|+||||++|++++++.++++|||+|
T Consensus 448 ~~ie~~-~~~~~~ivITElPy~v~k~~lie~I~~lv~~kki~~I~d~rDetsd~~gvrivI~lk~~~~~~~~l~~L~k~t 526 (692)
T 2xcs_B 448 AVIEER-GGGRQRIVVTEIPFQVNKARMIEKIAELVRDKKIDGITDLRDETSLRTGVRVVIDVRKDANASVILNNLYKQT 526 (692)
T ss_dssp EEEEEE-ETTEEEEEEEECCTTCCHHHHHHHHHHHHHTTCSCCEEEEEECCBTTTBSCEEEEECTTSCHHHHHHHHHHHS
T ss_pred EEEEec-CCCCceEEEEecCCcccHHHHHHHHHHHHhcCCCCCeeeccccCCCCCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 999864 3467899999999999999999999999999999999999999 99999999999999999999999999999
Q ss_pred ccccceeeeEEEEECCeeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHcCCCHH
Q psy14505 325 QLQNTFGMNMLALVNGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQ 404 (1619)
Q Consensus 325 ~l~~~~~~n~~~~~~~~p~~~~l~~il~~f~~~R~~~~~rR~~~~l~k~~~r~~ileg~~~a~~~id~vi~iir~s~~~~ 404 (1619)
+||+||++||++|++|+|+++|+++||++|++||+++|+||++|+|+++++|+|+|+|+++|+++||+||++||+|++++
T Consensus 527 ~Lq~s~~~Nm~~l~dg~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hilegl~~a~~~iD~vI~iIr~s~~~~ 606 (692)
T 2xcs_B 527 PLQTSFGVNMIALVNGRPKLINLKEALVHYLEHQKTVVRRRTQYNLRKAKDRAHILEGLRIALDHIDEIISTIRESDTDK 606 (692)
T ss_dssp TTEEEEEEECEEEETTEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTCSSHH
T ss_pred cceeeeeeeEEEEECCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHhCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcCCCCchhhhhhcccccccccccccccccccCCCccccCHHHHHHhhccchhhcchHHHHHHHHHHHHHHH
Q psy14505 405 EAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIK 484 (1619)
Q Consensus 405 ~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qa~aIL~m~L~~Lt~~e~~~l~~e~~~l~~ 484 (1619)
+|++.||++ |+||+.||+|||+|||||||++|++||++|+++|++
T Consensus 607 ~a~~~L~~~-----------------------------------f~lse~Qa~aIL~m~L~rLt~le~~kl~~E~~~l~~ 651 (692)
T 2xcs_B 607 VAMESLQQR-----------------------------------FKLSEKQAQAILDMRLRRLTGLERDKIEAEYNELLN 651 (692)
T ss_dssp HHHHHHHHH-----------------------------------HTCCHHHHHHHHTCBGGGGSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhc-----------------------------------cCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHH
Confidence 999999986 899999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccc
Q psy14505 485 KVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIIL 528 (1619)
Q Consensus 485 ~i~~l~~iL~~~~~~~~~i~~el~~ik~~f~~~~~~~RrT~I~~ 528 (1619)
+|++|+.||+|+.+++++|++||.+++++||+ +|||+|.+
T Consensus 652 ~i~~l~~iL~~~~~~~~~i~~el~~i~~~yg~----~RrT~i~~ 691 (692)
T 2xcs_B 652 YISELETILADEEVLLQLVRDELTEIRDRFGD----DRRTEIQL 691 (692)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC----CCCSEEEC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCC----CCCccccC
Confidence 99999999999999999999999999999999 99999964
No 7
>2xkj_E Topoisomerase IV; type IIA topoisomerase; 2.20A {Acinetobacter baumannii} PDB: 2xkk_A*
Probab=100.00 E-value=1.8e-142 Score=1332.40 Aligned_cols=489 Identities=39% Similarity=0.662 Sum_probs=464.6
Q ss_pred cceeccHHHHHHHHHHhhhhhhhccccCCCCccCCCcchhHHHHHHHhcCCCCCCCceeEEEehhhhccCcCCCCcchHH
Q psy14505 7 EVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIY 86 (1619)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ya~~~i~~Ralp~~~DGlKp~qRril~~~~~~~~~~~~~~~K~a~~~g~v~~~yhphgd~s~~ 86 (1619)
.+.+++|+++|.++|++||||||++|||||+|||||||||||||+|+++|++++++|+||||+||+|||+||||||+|+|
T Consensus 272 ~~~~i~i~d~~~~~~l~YamsvI~~RAlPdv~DGLKPvqRRILyam~~~~l~~~~~~~K~ArivG~V~gkYHPHGD~Siy 351 (767)
T 2xkj_E 272 ATENRSVAEFTEQAYLNYAMYVIMDRALPHISDGLKPVQRRIVYAMSELGLKSSGKPKKSARTVGDVLGKYHPHGDSACY 351 (767)
T ss_dssp --CEEEHHHHHHHHHHHHHHHHHHHHTCCBTTTSCCHHHHHHHHHHHHTTCCTTSCCEEHHHHHHHHHHHTCCSCHHHHH
T ss_pred CceeeeHHHHHHHHHHHHHHHHhhccCCCchhhcCCccchhhhHHHHHhCCCCCCCeeeeeehHHHHhhccCCCchhHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhcCccccccccCCCCCCCCCCCcc-cccccccccccHHHHHhhccCCCCccccccCCCCCcCCcceecCCCce
Q psy14505 87 DALVRMAQSFSLRCTLVDGQGNFGSIDGDSA-AAMRYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTRIPN 165 (1619)
Q Consensus 87 ~~~v~maq~~~~~~pl~~~~GnfGs~~g~~~-aa~RY~~~~ls~~~~~~~~~~d~~~~~~~~n~d~~~~eP~~~~~~~P~ 165 (1619)
||||||||+||||||||||||||||++||+| |||||||||||++|+.||+++|++||+|+|||||+.+||+||||+|||
T Consensus 352 daiVrmAQ~fs~r~pLldg~GNFGS~dgd~a~AA~RYte~rLs~ia~~ll~~~d~~tvdf~~n~Dg~~~EP~vlp~~iP~ 431 (767)
T 2xkj_E 352 EAMVLMAQPFSYRYPLIEGQGNWGSPDDPKSFAAMRYTEAKLSAYSELLLSELGQGTSEWQDNFDGSLKEPITLPARVPN 431 (767)
T ss_dssp HHHHHHHCTTTCSSCSEECSSCCCBTTBTTCCCCTTTCEEEECGGGHHHHTTTTTTCSCEEECTTSSSEEESSCCCSSCH
T ss_pred HHHHHHhhhhhcccceeecCCCCCCCCCCcccccccceeeeHhHHHHHHHhhcCccccccCcCCCCcccCchhccccccH
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred eeecCCcceeeeeecCCCCCChHHHHHHHHHHhcCCCCChHHHhccCCCCCCCCceEEe-ccccccccceecccEEEEeE
Q psy14505 166 LLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIY-GLSSVHDGYYTGKGRVIIRA 244 (1619)
Q Consensus 166 ~L~ng~~Gia~G~at~ip~~n~~ev~~~~~~~l~~~~~~~~~l~~~~~~p~~p~g~~i~-~~~~~~~~y~~g~G~~~~~~ 244 (1619)
||||||+|||||||||||||||.|||+||+++|+||+++.++||+++|||||||||.|. +..|+.++|+||+|+|++||
T Consensus 432 lLvNGa~GIavGmaT~IPphNl~Evi~a~~~li~~~~~~~~~l~~~i~gPdFptgG~I~~~~~~i~~~Y~tGrG~i~~rg 511 (767)
T 2xkj_E 432 ILLNGTTGIAVGMATDIPPHNLREVVKGTIALIRNPQTSDEKLAEYIPAPDLPTKAEIITPPEELLKIQTTGRGSYRMRA 511 (767)
T ss_dssp HHHHCEEEEETTEEEEECCCCHHHHHHHHHHHHHCTTCCHHHHHHHCCSCCCSSSCEECCCHHHHHHHHHHSEEEEEEEC
T ss_pred HHhcCCCccccccccCCCCCCHHHHHHHHHHHhcCCCCCHHHHHhhCCCCCCCCCceEecCchhhHHHhccCCeeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999987 57899999999999999999
Q ss_pred EEEEEEeccCCccEEEEEecCCcccHHHHHHHHHHHHhccCcCCcceeecccCC-cceEEEEEecC-CCCHHHHHHHHHh
Q psy14505 245 KTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLVKEKKLECISNLRDESDK-SGMRIVIELKR-NEIPEIVLNKLYK 322 (1619)
Q Consensus 245 ~~~~~~~~~~~~~~i~itelP~~~~~~~~~~~i~~~~~~~~~~~i~~~~d~s~~-~~~~i~i~lk~-~~~~~~~~~~l~k 322 (1619)
+|++++ ++|+||||||++|+++|+|+|++++++||+++|+|+|||||+ +|+||||++|+ +++++.++++|||
T Consensus 512 ~~~ie~------~~ivITElPy~v~~~~~ie~I~~l~~~kki~~I~d~rDesd~~~gvrivI~lk~~~~~~~~vl~~L~k 585 (767)
T 2xkj_E 512 VYTIEK------NEIVITELPYQVSGSKVITQIADQMQAKKLPLVVDVRDESDHENPTRLVIVLRSNRIDAEAVMSHLFA 585 (767)
T ss_dssp EEEEET------TEEEEEECCTTCCHHHHHHHHHHHHHTTCCTTEEEEEECCCSSCSSCEEEEESCTTSCHHHHHHHHHH
T ss_pred EEEEEC------CEEEEEeCCCcCcHHHHHHHHHHHHhcCCCCceeehhhccCCCCcEEEEEEECcCCCCHHHHHHHHHH
Confidence 999872 589999999999999999999999999999999999999998 59999999998 6999999999999
Q ss_pred hcccccceeeeEEEEE-CCeeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHcCC
Q psy14505 323 QTQLQNTFGMNMLALV-NGQPKLLNLKEILYYFILHRKEVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTS 401 (1619)
Q Consensus 323 ~t~l~~~~~~n~~~~~-~~~p~~~~l~~il~~f~~~R~~~~~rR~~~~l~k~~~r~~ileg~~~a~~~id~vi~iir~s~ 401 (1619)
+|+||++|++||++|+ +|+|+++|+++||++|++||+++|+||++|+|+++++|+|||+|+++|++|||+||++||+|+
T Consensus 586 ~T~Lq~sf~~Nm~~l~~~g~p~~~~l~~iL~~f~~~R~~v~~rR~~~~L~k~~~r~hiLegl~ia~~~iD~vI~iIr~s~ 665 (767)
T 2xkj_E 586 TTDLESSYRVNLNMIGEDGRPQVKSIRRILLEWIEIRKKTVTRRLQYHLNRIEKRLHILAGLLIAYLDIDTVIRIIREED 665 (767)
T ss_dssp HSTTEEEEEEECEEECTTSCEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHCS
T ss_pred hcchhhhcccceEEEccCCeeEEcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999995 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhhcCCCCchhhhhhcccccccccccccccccccCCCccccCHHHHHHhhccchhhcchHHHHHHHHHHHH
Q psy14505 402 TPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYEN 481 (1619)
Q Consensus 402 ~~~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qa~aIL~m~L~~Lt~~e~~~l~~e~~~ 481 (1619)
++ +..||++ |+||+.||+|||+|||||||++|++||.+|+++
T Consensus 666 ~~---k~~L~~~-----------------------------------f~lse~qa~aIl~mrL~rLt~le~~kl~~E~~~ 707 (767)
T 2xkj_E 666 QP---KPVLMEH-----------------------------------FNIDEIQAEAILELKLRHLAKLEEMEIRHEQDE 707 (767)
T ss_dssp SH---HHHHHHH-----------------------------------HTCCHHHHHHHHHSCHHHHHHCCHHHHHHHHHH
T ss_pred ch---HHHHHHh-----------------------------------cCCCHHHHHHHHHhHHHHhhhhHHHHHHHHHHH
Confidence 86 7789876 899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCCCCCCcccccc--ccCCCCccccccCcc
Q psy14505 482 VIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSHKKNIRRSEIIL--NAINPSTEDLIASQD 543 (1619)
Q Consensus 482 l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~~f~~~~~~~RrT~I~~--~~~~~~~~~li~~e~ 543 (1619)
|+++|++|+.||+|+.+++++|++||.+++++||+ +|||+|.+ ...+++.|++|++|+
T Consensus 708 l~~~i~~l~~iL~~~~~~~~~i~~el~~~~~~yg~----~RrT~i~~~~~~~~~~~edli~~e~ 767 (767)
T 2xkj_E 708 LSAKAAIIREQLENPESLKNLIISELKEDAKKFGD----ERRSPIVARAEAVQIKEQDLMPAET 767 (767)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCC----CCSSCBCCCCCCCCC----------
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC----CCCceeecccccccCCHhhcCCCCC
Confidence 99999999999999999999999999999999999 99999985 346789999999875
No 8
>3l4j_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, covalently linked comple supercoiling; HET: DNA PTR TSP; 2.48A {Saccharomyces cerevisiae} SCOP: e.11.1.1 PDB: 3l4k_A* 1bjt_A 1bgw_A 2rgr_A*
Probab=100.00 E-value=1.3e-109 Score=1022.35 Aligned_cols=474 Identities=21% Similarity=0.297 Sum_probs=402.4
Q ss_pred cceeccHHHHHHHHHHhhhhhhhccccCCCCccCCCcchhHHHHHHHhcCCCCCCCceeEEEehhhhcc--CcCCCCcch
Q psy14505 7 EVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMG--KYHPHGDVS 84 (1619)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ya~~~i~~Ralp~~~DGlKp~qRril~~~~~~~~~~~~~~~K~a~~~g~v~~--~yhphgd~s 84 (1619)
++.+++++++|.++|+.||||+| .|||||+|||||||||||||+|+++|+ ++++||||+||+||| +|| |||+|
T Consensus 246 ~~~~~~~~~~~~~~~i~ysm~~~-~RAlPdv~DGLKPvqRrILyam~~~~~---~~~~K~A~ivG~V~~~~~YH-HGD~s 320 (757)
T 3l4j_A 246 TLKEIPISDFINKELILFSLADN-IRSIPNVLDGFKPGQRKVLYGCFKKNL---KSELKVAQLAPYVSECTAYH-HGEQS 320 (757)
T ss_dssp SCSEECHHHHHHHTHHHHHHHHH-HHHSCBTTTCCCHHHHHHHHHHHHTTT---TSCEEHHHHHHHHHHHTTCC-SCHHH
T ss_pred ceeeecHHHHHHHHHHHHhhhhh-hccCchhhccCCchheeeehhhhhhCC---CcCcceeeeehhhhhhcccC-CCchH
Confidence 67899999999999999999997 599999999999999999999999998 467999999999995 999 99999
Q ss_pred HHHHHHHHhhcC--ccccccccCCCCCCCC--CCCcccccccccccccHHHHHhhccCCCCccccccCCCCCcCCcceec
Q psy14505 85 IYDALVRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLP 160 (1619)
Q Consensus 85 ~~~~~v~maq~~--~~~~pl~~~~GnfGs~--~g~~~aa~RY~~~~ls~~~~~~~~~~d~~~~~~~~n~d~~~~eP~~~~ 160 (1619)
+|||||||||+| |||||||||||||||+ |||+||||||||||||++|+.||+++|+++|+|+| |||+..||+|||
T Consensus 321 iydaiVrmAQ~f~gS~~~pLldgqGNFGS~~~~gd~aAA~RYte~rLs~~a~~l~~d~d~~~vdf~~-~Dg~~~EP~vlp 399 (757)
T 3l4j_A 321 LAQTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQ-EDEKTVEPEWYL 399 (757)
T ss_dssp HHHHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHHSCGGGGGGSCEEE-CSSSEEEESCCC
T ss_pred HHHHHHHHhccchhhcccceeccCCCCCCcCCCCCcccccchhhhchhHHHHHHhcccccCcccCcC-CCCCccCCcccc
Confidence 999999999999 5999999999999999 78999999999999999999999999999999997 999999999999
Q ss_pred CCCceeeecCCcceeeeeecCCCCCChHHHHHHHHHHhcCCCCChHHHhccCCCCCCCCceEEeccccccccceecccEE
Q psy14505 161 TRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRV 240 (1619)
Q Consensus 161 ~~~P~~L~ng~~Gia~G~at~ip~~n~~ev~~~~~~~l~~~~~~~~~l~~~~~~p~~p~g~~i~~~~~~~~~y~~g~G~~ 240 (1619)
|+|||||||||+|||||||||||||||.|||+||+++|+||+++ +|+ |+|| |+.|+++ .+|+|++
T Consensus 400 ~~iP~lLvNGs~GIavGmATnIPphNl~Evi~a~~~~i~~~~~~--~l~-----p~~~------G~~G~i~--~~g~G~~ 464 (757)
T 3l4j_A 400 PILPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEELE--QMH-----PWFR------GWTGTIE--EIEPLRY 464 (757)
T ss_dssp CSSCHHHHHCEEEECSSCEEEECCCCHHHHHHHHHHHHTTCCCC--CCC-----CCCT------TCCSEEE--EEETTEE
T ss_pred cccchhhhcCCcceEeeeccCCCCCCHHHHHHHHHHHhcCCChh--hhc-----cccc------CCCceEE--ecCCcEE
Confidence 99999999999999999999999999999999999999999864 344 3444 2345444 3789999
Q ss_pred EEeEEEEEEEeccCCccEEEEEecCCcccHHHHHHHHHHHH--hccCcCCcceeecccCCcceEEEEEecCCCCHHHHHH
Q psy14505 241 IIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLV--KEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLN 318 (1619)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~i~itelP~~~~~~~~~~~i~~~~--~~~~~~~i~~~~d~s~~~~~~i~i~lk~~~~~~~~~~ 318 (1619)
++||+++.. ++++|+||||||++|+++|+++|++++ .+|++++|+||||+|++ |+||||+||++++++.+++
T Consensus 465 ~~rg~~e~~-----~~~~IvITElPy~v~~~~lie~I~~lv~~~~K~~~~I~dirDesd~-gvrivI~lk~~~~~~~~l~ 538 (757)
T 3l4j_A 465 RMYGRIEQI-----GDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHDD-NIKFIITLSPEEMAKTRKI 538 (757)
T ss_dssp EEECEEEEE-----ETTEEEEEECCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEECCSS-SCCEEEECCHHHHHHHHHH
T ss_pred EEEEEEEEc-----CCCeEEEEeCCCccCHHHHHHHHHHHHhhccCCCccceehhhcCCC-cEEEEEEecCCcchHHHHH
Confidence 999998643 357899999999999999999999999 77889999999999999 9999999999999999999
Q ss_pred HHHhhcccccceee-eEEEEE-CCe-eeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHH
Q psy14505 319 KLYKQTQLQNTFGM-NMLALV-NGQ-PKLLNLKEILYYFILHRKEVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQ 395 (1619)
Q Consensus 319 ~l~k~t~l~~~~~~-n~~~~~-~~~-p~~~~l~~il~~f~~~R~~~~~rR~~~~l~k~~~r~~ileg~~~a~~~id~vi~ 395 (1619)
+|||+|+||++|++ ||++++ +|+ |+++|+++||++|++||+++|+||++|+|++++.+++++++.++. |..||+
T Consensus 539 ~L~k~t~Lq~sf~~~nm~l~d~~g~~~~~~~l~eiL~~f~~~R~ev~~rR~~~~l~k~~~~l~~l~nk~rF---I~~vi~ 615 (757)
T 3l4j_A 539 GFYERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKF---IKMIIE 615 (757)
T ss_dssp CHHHHTTCEEEEECSCCEEECTTSCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHT
T ss_pred HHHHhcCCeEEeccceEEEEcCCCCccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHc
Confidence 99999999999998 788887 477 479999999999999999999999999999999999999998763 333442
Q ss_pred --HHHcCCCHHHHHHHHHhhcCCCCchhhhhhccc--------cccccccccccccc----ccCCCcc----ccCHHHHH
Q psy14505 396 --IIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNK--------KNYNTISKINNISK----LQNNDMY----KLSDIQAQ 457 (1619)
Q Consensus 396 --iir~s~~~~~a~~~L~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~----~~~~~~~----~~~~~Qa~ 457 (1619)
++-+.+.+++..+.|.+.+|++.|......... ++. ..++-++... ...+... +-+...++
T Consensus 616 g~l~i~nkkk~~li~eL~~~~f~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~yd 694 (757)
T 3l4j_A 616 KELTVTNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQIND-VKGATSDEEDEESSHEDTENVINGPEELYGTYE 694 (757)
T ss_dssp TSCCCSSSCHHHHHHHHHHTTCCEECSSCCEECCC-------------------------------------CTTTCBSH
T ss_pred CeeEEcCCcHHHHHHHHHHcCCCCCccccccccccccccccccccc-ccchhhhccccccccccccccccCcccccCchH
Confidence 444778999999999999999877322111100 000 0000000000 0000000 00002359
Q ss_pred HhhccchhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q psy14505 458 EILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGS 516 (1619)
Q Consensus 458 aIL~m~L~~Lt~~e~~~l~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~~f~~ 516 (1619)
|||+|+|++||..++++|.+|.+++++|++.|+. . .-..+|.++|+++.+++..
T Consensus 695 YLL~M~i~sLT~E~~~kL~~q~~~k~~El~~L~~--~---t~~dlW~~DLd~f~~~~~~ 748 (757)
T 3l4j_A 695 YLLGMRIWSLTKERYQKLLKQKQEKETELENLLK--L---SAKDIWNTDLKAFEVGYQE 748 (757)
T ss_dssp HHHTSCGGGGSHHHHHHHHHHHHHHHHHHHHHHT--C---CHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCchhccCHHHHHHHHHHHHHHHHHHHHHHc--C---CHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 3 3557889999999887753
No 9
>3qx3_A DNA topoisomerase 2-beta; toprim domain, winged-helix domain, coiled-coil domain, DNA and cleavage, nucleus; HET: DNA EVP; 2.16A {Homo sapiens} PDB: 4fm9_A*
Probab=100.00 E-value=2.1e-107 Score=1002.19 Aligned_cols=474 Identities=23% Similarity=0.330 Sum_probs=407.9
Q ss_pred cceeccHHHHHHHHHHhhhhhhhccccCCCCccCCCcchhHHHHHHHhcCCCCCCCceeEEEehhhh--ccCcCCCCcch
Q psy14505 7 EVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGET--MGKYHPHGDVS 84 (1619)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ya~~~i~~Ralp~~~DGlKp~qRril~~~~~~~~~~~~~~~K~a~~~g~v--~~~yhphgd~s 84 (1619)
.+..+++++.+.++.+.|||+ ++.|||||+|||||||||||||+|++++ +++|+||||+||+| ||+|| |||+|
T Consensus 287 ~~~~i~y~dFInkELi~FS~a-dn~RaiP~v~DGLKPvqRriLy~m~~~~---~~~~~K~A~~vG~vse~~~YH-HGd~s 361 (803)
T 3qx3_A 287 ATKHLTYNDFINKELILFSNS-DNERSIPSLVDGFKPGQRKVLFTCFKRN---DKREVKVAQLAGSVAEMSAYH-HGEQA 361 (803)
T ss_dssp --CEEEHHHHHHHTHHHHHHH-HHHHHSCBTTTSCCHHHHHHHHHHHHHC---CSSCEEHHHHHHHHHHHHTCC-SCHHH
T ss_pred ccceeeHHHhhhHHHHHHHHH-hhccCCCchhhCCCcccceeeHhhhccC---CCCceeEEEEeeehhhhccCC-CChHH
Confidence 355799999999999999995 8999999999999999999999999987 58999999999999 89999 99999
Q ss_pred HHHHHHHHhhcC--ccccccccCCCCCCCC--CCCcccccccccccccHHHHHhhccCCCCccccccCC-CCCcCCccee
Q psy14505 85 IYDALVRMAQSF--SLRCTLVDGQGNFGSI--DGDSAAAMRYTECRLNKISNELLIDLDKETIDFISNY-DGKEKEPSVL 159 (1619)
Q Consensus 85 ~~~~~v~maq~~--~~~~pl~~~~GnfGs~--~g~~~aa~RY~~~~ls~~~~~~~~~~d~~~~~~~~n~-d~~~~eP~~~ 159 (1619)
+|+|||||||+| |||||||||||||||+ |||+||||||||||||++|+.||+++|+++|+| || ||+.+||+||
T Consensus 362 iy~aiV~mAQ~f~GS~~~~Ll~~~GnFGsr~~~gd~aAA~RYte~rLs~~a~~l~~~~d~~~vd~--~ydd~~~~EP~vl 439 (803)
T 3qx3_A 362 LMMTIVNLAQNFVGSNNINLLQPIGQFGTRLHGGKDAASPRYIFTMLSTLARLLFPAVDDNLLKF--LYDDNQRVEPEWY 439 (803)
T ss_dssp HHHHHHHHHCCSTTSCSSCSBCCBSCCCCTTTTTTTCCCTTSCEECBCTTHHHHSCHHHHTTSCE--EEETTEEEEESCC
T ss_pred HHHHHHHHhcchhhhccccccccCCCcCCCCCCCCcccchhhhheeccHHHHHHhhccccccccc--ccCCCcccccccc
Confidence 999999999999 6999999999999996 899999999999999999999999999999999 57 4668999999
Q ss_pred cCCCceeeecCCcceeeeeecCCCCCChHHHHHHHHHHhcCCCCChHHHhccCCCCCCCCceEEeccccccccceecccE
Q psy14505 160 PTRIPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGR 239 (1619)
Q Consensus 160 ~~~~P~~L~ng~~Gia~G~at~ip~~n~~ev~~~~~~~l~~~~~~~~~l~~~~~~p~~p~g~~i~~~~~~~~~y~~g~G~ 239 (1619)
||+|||||||||+|||||||||||||||.|||+|++++|+||+ |+|||||| .|+.|+++ .||+|+
T Consensus 440 p~~iP~lLvNGa~GIavGmaTnIPphNl~Evi~a~~~ll~~~~----------~~pd~P~~---~gf~G~i~--~tGrg~ 504 (803)
T 3qx3_A 440 IPIIPMVLINGAEGIGTGWACKLPNYDAREIVNNVRRMLDGLD----------PHPMLPNY---KNFKGTIQ--ELGQNQ 504 (803)
T ss_dssp CCSSCHHHHTTCEEECSSCEEECCCCCHHHHHHHHHHHHTTCC----------CCCCCCCC---TTCCSEEE--EEETTE
T ss_pred cccCCeeeecCCcceEeeeecCCCCCCHHHHHHHHHHHhcCCC----------CCCCCCcc---CCCcceEE--ecCCcE
Confidence 9999999999999999999999999999999999999999987 68999998 57788764 699999
Q ss_pred EEEeEEEEEEEeccCCccEEEEEecCCcccHHHHHHHHHHHH---hccCcCCcceeecccCCcceEEEEEecCCCCHHHH
Q psy14505 240 VIIRAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLV---KEKKLECISNLRDESDKSGMRIVIELKRNEIPEIV 316 (1619)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~i~itelP~~~~~~~~~~~i~~~~---~~~~~~~i~~~~d~s~~~~~~i~i~lk~~~~~~~~ 316 (1619)
+++||++++++ +++|+||||||++|++.+++++.+.+ ++|+++||+||||+|+++|+||||+|+++++++.+
T Consensus 505 ~~~rg~~~~~~-----~~~IvITELPy~~~t~~~k~~lle~i~~~~~K~~~~I~d~rDes~~~gvrivI~Lk~~~~~~~v 579 (803)
T 3qx3_A 505 YAVSGEIFVVD-----RNTVEITELPVRTWTQVYKEQVLEPMLNGTDKTPALISDYKEYHTDTTVKFVVKMTEEKLAQAE 579 (803)
T ss_dssp EEEECEEEEEE-----TTEEEEEECCTTCCHHHHHHHTHHHHHHCCSSSCCCCSEEEECCCSSCCCEEEECCHHHHHHHH
T ss_pred EEEEEEEEEec-----CCEEEEEECCCccchhHHHHHHHHHHHhhcccCCcceeeccccCCCCceEEEEEEcCCchHHHH
Confidence 99999999873 57899999999999887777654433 46789999999999999999999999999999999
Q ss_pred HHHHHhhcccccceeeeEEEEECC---eeeeeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHH
Q psy14505 317 LNKLYKQTQLQNTFGMNMLALVNG---QPKLLNLKEILYYFILHRKEVIKRRTIFELRKAREYAHILEGLTIALTNIDNF 393 (1619)
Q Consensus 317 ~~~l~k~t~l~~~~~~n~~~~~~~---~p~~~~l~~il~~f~~~R~~~~~rR~~~~l~k~~~r~~ileg~~~a~~~id~v 393 (1619)
+++|||+|+||+||++||++++|+ .|+++|+++||++|++||+++|+||++|+|+++++++++|++.++. |.+|
T Consensus 580 l~~Lyk~t~Lq~sf~~n~~~l~d~~g~~pk~~~l~eiL~~F~~~R~ev~~rR~~~lL~kLq~el~kL~nk~rF---I~~v 656 (803)
T 3qx3_A 580 AAGLHKVFKLQTTLTCNSMVLFDHMGCLKKYETVQDILKEFFDLRLSYYGLRKEWLVGMLGAESTKLNNQARF---ILEK 656 (803)
T ss_dssp HHCHHHHTTCEEEEECCCEEEECTTSCEEEESCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
T ss_pred HHHHHHhcCCeEEeeceeEEEECCCCCcceeCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHH
Confidence 999999999999999998877765 4799999999999999999999999999999999999999998863 3344
Q ss_pred HH--HHHcCCCHHHHHHHHHhhcCCCCchhhhhhcccccccccccccccccccCCCccccCHHHHHHhhccchhhcchHH
Q psy14505 394 IQ--IIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNME 471 (1619)
Q Consensus 394 i~--iir~s~~~~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Qa~aIL~m~L~~Lt~~e 471 (1619)
|+ |+-+.+.+++..+.|.+.+|++.|.++|...........+..++..... ...-.-+...++|||+|+|++||..+
T Consensus 657 i~g~l~i~nkkk~~li~eL~~~~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ydYLL~M~i~sLT~E~ 735 (803)
T 3qx3_A 657 IQGKITIENRSKKDLIQMLVQRGYESDPVKAWKEAQEKAAEEDETQNQHDDSS-SDSGTPSGPDFNYILNMSLWSLTKEK 735 (803)
T ss_dssp HTTSCCCTTCCHHHHHHHHHHTTCCSCHHHHHHHHCC------------------------CCCCHHHHTSBGGGGSHHH
T ss_pred hcCceeecCCcHHHHHHHHHHcCCCCCCchhhhhhhccccccccccccccccc-cccccccccchhHHhCCchhhcCHHH
Confidence 42 4447789999999999999999999887654321100000000000000 00000011134999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q psy14505 472 QKKIINKYENVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGS 516 (1619)
Q Consensus 472 ~~~l~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~~f~~ 516 (1619)
+++|.+|++++++|++.|+. ..-..+|.++|+++.+++-.
T Consensus 736 ~~kL~~q~~~k~~El~~L~~-----~t~~dlW~~DLd~f~~~~~~ 775 (803)
T 3qx3_A 736 VEELIKQRDAKGREVNDLKR-----KSPSDLWKEDLAAFVEELDK 775 (803)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988 33567889999999988854
No 10
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.5e-108 Score=1087.70 Aligned_cols=480 Identities=22% Similarity=0.299 Sum_probs=408.0
Q ss_pred cceeccHHHHHHHHHHhhhhhhhccccCCCCccCCCcchhHHHHHHHhcCCCCCCCceeEEEehhhhccCcCCCCcchHH
Q psy14505 7 EVISILLEEEMCKSYLDYAMSVIVGRALPDVRDGLKPVHRRVLFAMHEMNNLWNRPFVKCARVVGETMGKYHPHGDVSIY 86 (1619)
Q Consensus 7 ~~~~~~~~~~~~~~~~~ya~~~i~~Ralp~~~DGlKp~qRril~~~~~~~~~~~~~~~K~a~~~g~v~~~yhphgd~s~~ 86 (1619)
.+.+++++++|.++|++||||+|. |||||++||||||||||||+|+++|+.++.+|.|||++||+++| || |||+|||
T Consensus 666 ~~~~~~~~d~~~~~~~~ys~~~~~-RaiP~~~DGlKp~qRkil~~~~~~~~~~~~k~~k~a~~V~~~~~-yh-HGd~s~~ 742 (1177)
T 4gfh_A 666 TLKEIPISDFINKELILFSLADNI-RSIPNVLDGFKPGQRKVLYGCFKKNLKSELKVAQLAPYVSECTA-YH-HGEQSLA 742 (1177)
T ss_dssp SCSEEEHHHHHHHTHHHHHHHHHH-HHSCBTTTCCCHHHHHHHHHHHHTTTTSCEEHHHHHHHHHHHTT-CC-SCHHHHH
T ss_pred ccccccHHHHHHhhhhhhhhhhhh-hcCchhhhhcCcccceEehhhhhhccCCCccHHHHHHHHHhhhc-cC-CCcchHH
Confidence 567899999999999999999998 99999999999999999999999999999999999999999999 99 9999999
Q ss_pred HHHHHHhhcC--ccccccccCCCCCCC--CCCCcccccccccccccHHHHHhhccCCCCccccccCCCCCcCCcceecCC
Q psy14505 87 DALVRMAQSF--SLRCTLVDGQGNFGS--IDGDSAAAMRYTECRLNKISNELLIDLDKETIDFISNYDGKEKEPSVLPTR 162 (1619)
Q Consensus 87 ~~~v~maq~~--~~~~pl~~~~GnfGs--~~g~~~aa~RY~~~~ls~~~~~~~~~~d~~~~~~~~n~d~~~~eP~~~~~~ 162 (1619)
+|||+|||+| ||||||||||||||| .|||+||||||||||||++|+.||+++|++||+|+|| ||+..||+||||+
T Consensus 743 ~tiv~mAQ~f~gs~~~~Ll~~~GnFGsr~~~g~~~Aa~RYte~rl~~~a~~l~~~~d~~~v~~~~~-d~~~~EP~~~~p~ 821 (1177)
T 4gfh_A 743 QTIIGLAQNFVGSNNIYLLLPNGAFGTRATGGKDAAAARYIYTELNKLTRKIFHPADDPLYKYIQE-DEKTVEPEWYLPI 821 (1177)
T ss_dssp HHHHHHHCCSTTSCTTCSBCCBSCCCCTTTTTTTCCCTTTCEECBCTTHHHHSCGGGTTTSCEEEE-TTEEEEESCCCCS
T ss_pred HHHHHHHHHHHhhCceeeEEccCCCCccCCCCCcccccchhhhhHHHHHHHhcchhccccccCcCC-CCCccCccccccc
Confidence 9999999999 999999999999999 5999999999999999999999999999999999998 8999999999999
Q ss_pred CceeeecCCcceeeeeecCCCCCChHHHHHHHHHHhcCCCCChHHHhccCCCCCCCCceEEeccccccccceecccEEEE
Q psy14505 163 IPNLLINGSSGIAVGMATNIPPHNLTEVIDGVLYVLHNPECSINDLIKIIPAPDFPTAGIIYGLSSVHDGYYTGKGRVII 242 (1619)
Q Consensus 163 ~P~~L~ng~~Gia~G~at~ip~~n~~ev~~~~~~~l~~~~~~~~~l~~~~~~p~~p~g~~i~~~~~~~~~y~~g~G~~~~ 242 (1619)
|||||||||+|||||||||||||||.|||+||+++|+||++ .+++|||++|+| ++++|+||+|+ +
T Consensus 822 iP~lLvNGs~GIavGmaT~IPphN~~Evi~~~~~li~~~~~-----~~l~P~~~g~~G--------~i~~~~~gr~~--~ 886 (1177)
T 4gfh_A 822 LPMILVNGAEGIGTGWSTYIPPFNPLEIIKNIRHLMNDEEL-----EQMHPWFRGWTG--------TIEEIEPLRYR--M 886 (1177)
T ss_dssp SCSTTTTCEEEECSSCEEEECCBCHHHHHHHHHHHHTTCCC-----CCCCBCCTTCCC--------EEEECSTTCEE--E
T ss_pred cchhhccCCCcccccccccCCCCCHHHHHHHHHHHhcCCCH-----HHcCCCCCCCCC--------ceEeecCcEEE--E
Confidence 99999999999999999999999999999999999999874 456777777765 34678888765 4
Q ss_pred eEEEEEEEeccCCccEEEEEecCCcccHHHHHHHHHHHH--hccCcCCcceeecccCCcceEEEEEecCCCCHHHHHHHH
Q psy14505 243 RAKTHIEEFNRENRTAIIIDELPYQVNKKSLLEKISQLV--KEKKLECISNLRDESDKSGMRIVIELKRNEIPEIVLNKL 320 (1619)
Q Consensus 243 ~~~~~~~~~~~~~~~~i~itelP~~~~~~~~~~~i~~~~--~~~~~~~i~~~~d~s~~~~~~i~i~lk~~~~~~~~~~~l 320 (1619)
+|.++. .++++|+||||||++|+++|+|+|++++ ++|++++|+|++|+|| +|+||||+++++++++.++++|
T Consensus 887 ~g~~e~-----~~~~~i~ITELP~~v~~~~~~e~i~~~~~~~~K~~~~I~d~~d~sd-~~vrivI~lk~~~~~~~~~~~L 960 (1177)
T 4gfh_A 887 YGRIEQ-----IGDNVLEITELPARTWTSTIKEYLLLGLSGNDKIKPWIKDMEEQHD-DNIKFIITLSPEEMAKTRKIGF 960 (1177)
T ss_dssp ECEEEE-----EETTEEEEEECCTTCCHHHHHHHHHHHHHCCSSSCCCCSEEEECCS-SSCCEEEECCHHHHHHHHHHCH
T ss_pred EEEEEE-----cCCCEEEEEeCCccccHHHHHHHHHHHhhhccCcccceeechhcCC-CccEEEEEECCCccHHHHHHhH
Confidence 555542 2567899999999999999999999998 5688999999999998 6899999999999999999999
Q ss_pred Hhhcccccceee-eEEEEE-CCe-eeeeCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHH-----H
Q psy14505 321 YKQTQLQNTFGM-NMLALV-NGQ-PKLLNLKEILYYFILHRKEVIKRR-------TIFELRKAREYAHILEGLT-----I 385 (1619)
Q Consensus 321 ~k~t~l~~~~~~-n~~~~~-~~~-p~~~~l~~il~~f~~~R~~~~~rR-------~~~~l~k~~~r~~ileg~~-----~ 385 (1619)
||+|+||++|++ ||++++ +|+ |+++|+++||++|++||+++|+|| ++++|+++++|+|+|+|++ +
T Consensus 961 ~k~t~L~~s~~~~Nm~~~d~~g~i~k~~~l~eiL~~f~~~R~e~~~rRk~~~l~~l~~~l~k~~~r~~fi~~vi~~~L~i 1040 (1177)
T 4gfh_A 961 YERFKLISPISLMNMVAFDPHGKIKKYNSVNEILSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFIKMIIEKELTV 1040 (1177)
T ss_dssp HHHTTCEEEECCSCCEEECTTSCEEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCC
T ss_pred HHhccCcceecceEEEEEcCCCCccCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCeEEE
Confidence 999999999997 899998 455 889999999999999999999999 4556667777777787754 4
Q ss_pred HHhchhHHHHHHHcCCCHHHHHHHHHhhcCCCCchhhhhhccccccccccccccc--ccccCCCccccCHHHHHHhhccc
Q psy14505 386 ALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTISKINNI--SKLQNNDMYKLSDIQAQEILKMP 463 (1619)
Q Consensus 386 a~~~id~vi~iir~s~~~~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~Qa~aIL~m~ 463 (1619)
+..++|++|++||++..+..|+..|+...|....+.......++......+.+.. ........|.+++.||+|||+||
T Consensus 1041 ~~~~~devI~~Lr~~~~~~~ak~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qydyIL~Mr 1120 (1177)
T 4gfh_A 1041 TNKPRNAIIQELENLGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYEYLLGMR 1120 (1177)
T ss_dssp SSSCHHHHHHHHHHTTCCEECSSSCEECCC------------------------------------CTTTCBTHHHHSSB
T ss_pred ecCCHHHHHHHHHHCCCcccchhhhhhcccchhhhhhhhhhhccccccccccccccchhhhhhcccccccchhhHHhcCh
Confidence 5667899999999999999999999988888776655443332221111111111 01112235889999999999999
Q ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Q psy14505 464 LQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGS 516 (1619)
Q Consensus 464 L~~Lt~~e~~~l~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~~f~~ 516 (1619)
||+||++++++|++|+++++++|++|+++..+ ++|.+||++++++|..
T Consensus 1121 L~~LT~ee~ekL~~E~~e~~~ei~~L~~~s~~-----~lw~~DLd~~~~~~~~ 1168 (1177)
T 4gfh_A 1121 IWSLTKERYQKLLKQKQEKETELENLLKLSAK-----DIWNTDLKAFEVGYQE 1168 (1177)
T ss_dssp GGGGSHHHHHHHHHHHHHHHHHHHHHHTCCHH-----HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHH-----HHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996432 6789999999888754
No 11
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.9e-56 Score=530.08 Aligned_cols=318 Identities=35% Similarity=0.667 Sum_probs=287.2
Q ss_pred CcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCccCC
Q psy14505 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSR 620 (1619)
Q Consensus 541 ~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~~~ 620 (1619)
+|+++|++|++|||||+++++|++|+|||+|..++++|++|.+.+++.|+|||+||||||.||+|++++++||+++|+++
T Consensus 2 ~E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 2 AEDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CCEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred CccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEecCC
Q psy14505 621 GKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGS 700 (1619)
Q Consensus 621 G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~~~~ 700 (1619)
|.|+.++++++++|+|++++++ ++++++++++++|++||+||+++++|..++++|+.+++++++|+++++..++++
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~----~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r~G~~~i~lke~D~lv~~~~~~~~ 157 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQI----RGYTDAPYLVLATRNGLVKKSKLTDFDSNRSGGIVAVNLRDNDELVGAVLCSAG 157 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEE----SSTTSSSEEEEEETTSEEEEEEGGGGCCCCSSCEESCBCCTTCCEEEEEEECTT
T ss_pred CEEHHHccCCCCCCEEEEEEEe----ccCCCCCEEEEEcCCCEEEEeEHHHhhccccCceEEEEECCCCEEEEEEEecCC
Confidence 9999999999999999999998 567788999999999999999999999998889999999999999999999999
Q ss_pred CeEEEEeCCceEEEEecc--cccccCCCCCCccceecCCCCEEEEEEEecCCCCcEEEEEecCceeEEeccccccccccc
Q psy14505 701 YDIMLFSDSGKAVRFNEN--SVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGT 778 (1619)
Q Consensus 701 d~lll~T~~G~~~~~~~~--eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~ 778 (1619)
++|++||++|++|+|+++ +||+++|.++|+++|+|.+||+|+++.++++ +.+++++|++|++||+++++|+..+|++
T Consensus 158 d~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~-~~~ll~~T~~G~~Krt~l~e~~~~~R~~ 236 (327)
T 3uc1_A 158 DDLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVRE-GTYLLVATSGGYAKRTAIEEYPVQGRGG 236 (327)
T ss_dssp CEEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCT-TCEEEEEETTSEEEEEEGGGSCBCCTTS
T ss_pred CEEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECC-CCEEEEEeCCCcEEEEEHHHccccCcCC
Confidence 999999999999999999 9999999999999999999999999999876 5689999999999999999999999999
Q ss_pred ccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCcccccCCCCCCeEEEEcCCCceEEEEEEeecccccccc
Q psy14505 779 KGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKITMIKKY 858 (1619)
Q Consensus 779 kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~eI~~~gr~a~Gv~~i~L~~~d~v~~~~~~~~~~~~k~~ 858 (1619)
+|+.++++.+++|+|+++..++++++++++|++|+++||++++||++||+|+||++|+|+++|+|+++..+++.+ ..
T Consensus 237 ~G~~~~~l~~~~d~lv~~~~~~~~~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~---~~ 313 (327)
T 3uc1_A 237 KGVLTVMYDRRRGRLVGALIVDDDSELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEES---GD 313 (327)
T ss_dssp CCEESSCCCTTTCSEEEEEEECTTCEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC--------
T ss_pred CcEEEEEecCCCCeEEEEEEeCCCccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCc---ce
Confidence 999999998878999999999999999999999999999999999999999999999999999999999887642 34
Q ss_pred ccEEEecC
Q psy14505 859 IPVITIDG 866 (1619)
Q Consensus 859 ~~iIti~g 866 (1619)
.+.|+..|
T Consensus 314 ~~~~~~~g 321 (327)
T 3uc1_A 314 DNAVDANG 321 (327)
T ss_dssp --------
T ss_pred EEEEecCC
Confidence 55666553
No 12
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=100.00 E-value=2.7e-54 Score=518.18 Aligned_cols=313 Identities=52% Similarity=0.870 Sum_probs=297.8
Q ss_pred cccccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCC
Q psy14505 536 EDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQG 615 (1619)
Q Consensus 536 ~~li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~ 615 (1619)
.|||++|+++|++|++|||||+++++|++|+|||+|..++++|++|++.+++.|++|++|||||+.|++|++++++||++
T Consensus 1 ~dlI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~ 80 (370)
T 3l6v_A 1 MDLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEA 80 (370)
T ss_dssp CCCCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBC
T ss_pred CCcccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEE
Q psy14505 616 SRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAA 695 (1619)
Q Consensus 616 ~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~ 695 (1619)
+|+++|.|+.++++++++|+|++++++ +++.++.+++++|++||+||+++++|..++++|+.+++|+++|.++++.
T Consensus 81 ~r~a~G~~i~~ll~L~~~e~Iv~~~~~----~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~~~G~~ai~L~~~d~lv~v~ 156 (370)
T 3l6v_A 81 GSNARGRPIINWIPLESGERVQAVLPV----REYADNRYVFMATRNGTVKKTPLSEFAFRLARGKIAINLDEGDALVGVA 156 (370)
T ss_dssp CTTSCCEEGGGSCCCCTTCCEEEEEEE----SCCCTTCEEEEEETTSEEEEEEGGGGCSCCTTCEESSCCCTTCCEEEEE
T ss_pred CcccCCcCHhhccCCCCCCEEEEEEEe----ccCCCCcEEEEEeCCCeEEEeEHHHhhcccCCceEEEEeCCCCEEEEEE
Confidence 999999999999999999999999988 4556677999999999999999999998888899999999999999999
Q ss_pred EecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEecC--------------------------
Q psy14505 696 LTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNN-------------------------- 749 (1619)
Q Consensus 696 ~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~-------------------------- 749 (1619)
.++++++|+++|++|+++||++++||+++|.++||++|+|.++|+|+++..+++
T Consensus 157 ~~~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~~~~~~~~~~~~~~~~~t~~g~~~~ 236 (370)
T 3l6v_A 157 LTDGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSERAGGVEDEVEDESAEEVVETTDGAEPA 236 (370)
T ss_dssp EECSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEECCC-------------------------
T ss_pred EeCCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEecccccccccccccccccccccccccccc
Confidence 999999999999999999999999999999999999999999999999988762
Q ss_pred --------CCCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 750 --------QKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 750 --------~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
.+.+++++|++||+||++++||+.++|+++|++++++++++|.|+++..+.++++++++|++|+++|+++++
T Consensus 237 ~~~~~~~~~~~~il~vTe~G~gKrt~~~e~~~~~Rg~kGv~~~k~~~~~g~lv~~~~v~~~d~i~liT~~G~~iR~~v~~ 316 (370)
T 3l6v_A 237 VIDVADNGDVAYILTATENGYGKRTPLAEYPRKGRGTQGVIGIQTTERNGKLVRAVLLGSTDEVMLISDGGTLVRTRGSE 316 (370)
T ss_dssp ----------CEEEEEETTSEEEEEEGGGSCCBCTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEETTCCEEEEEGGG
T ss_pred ccccccccCCceEEEeeCCCCEEEEEHHHhcccccCCcceEEEEecCCCCcEEEEEEeCCCceEEEEcCCCeEEEeeHhh
Confidence 245799999999999999999999999999999999998889999999999899999999999999999999
Q ss_pred ccccCCCCCCeEEEEcCCCceEEEEEEeecc
Q psy14505 822 IRKMGRSTQGVILITVENKSKLCGVQRLCKI 852 (1619)
Q Consensus 822 I~~~gr~a~Gv~~i~L~~~d~v~~~~~~~~~ 852 (1619)
|+.+||+++||++|+|+++|+|+++..+++.
T Consensus 317 i~~~gR~t~Gv~li~l~~~~~v~~v~~~~~~ 347 (370)
T 3l6v_A 317 ISRVGRNTQGVTLIRLSKGEKLQAVERLDAS 347 (370)
T ss_dssp SCBCCSSSCCEESSCCCTTCCEEEEEEECCC
T ss_pred CCccCCCCCCeEEEecCCCCEEEEEEEccCc
Confidence 9999999999999999999999999988654
No 13
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=100.00 E-value=2.4e-52 Score=492.78 Aligned_cols=306 Identities=51% Similarity=0.862 Sum_probs=271.9
Q ss_pred cCcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCccC
Q psy14505 540 ASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNS 619 (1619)
Q Consensus 540 ~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~~ 619 (1619)
++|+++|++|++|||||+++++|++|+++|+|..++++|++|++.+++.|++||+|+|||+.|++|++++++||+++|++
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEecC
Q psy14505 620 RGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDG 699 (1619)
Q Consensus 620 ~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~~~ 699 (1619)
+|.|+.++++++++|+|++++++ .+++++++++++|++||+||+++++|..+++.|+.+++|+++|.++++..+++
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~----~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~~d~lv~~~~~~~ 156 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPV----TEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVDGDELIGVDLTSG 156 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEE----SCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCTTCCEEEEEEECT
T ss_pred CCeEhhhccCCCCCCEEEEEEEe----ccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECCCCEEEEEEEeCC
Confidence 99999999999999999999887 45667788999999999999999999998888999999999999999999999
Q ss_pred CCeEEEEeCCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEecCCCCcEEEEEecCceeEEecccccccccccc
Q psy14505 700 SYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTK 779 (1619)
Q Consensus 700 ~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~k 779 (1619)
+++|+++|++|++++|++++||.++|.++|+++|+|++||+|+++..+++ +..++++|++|++||+++++|+.++|+++
T Consensus 157 ~~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~-~~~ll~~T~~G~~Kr~~~~e~~~~~Rg~k 235 (307)
T 1zi0_A 157 EDEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRG-DGAILTATQNGYGKRTAVAEYPTKSRATK 235 (307)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCS-SCEEEEEETTSEEEEECGGGSCCCCTTSC
T ss_pred CCEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecC-CCEEEEEEcCCceEEEEHHHhccCCCCCC
Confidence 99999999999999999999999999999999999999999999987765 45799999999999999999999999999
Q ss_pred cceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCcccccCCCCCCeEEEEcCCCceEEEEEEee
Q psy14505 780 GIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLC 850 (1619)
Q Consensus 780 G~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~eI~~~gr~a~Gv~~i~L~~~d~v~~~~~~~ 850 (1619)
|+.++++.+++|.|+++..++++++++++|++|+++||++++||.+||+++||++|+|+++|+|+++..++
T Consensus 236 G~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~i~~~~R~~~Gv~~i~l~~~~~v~~~~~~~ 306 (307)
T 1zi0_A 236 GVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSEISIVGRNTQGVILIRTAEDENVVGLQRVA 306 (307)
T ss_dssp CEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGGSCBCCSSCCCEECSCCCTTCCEEEEEECC
T ss_pred CEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEecccccccCcCCCCeEeEEcCCCCEEEEEEEcC
Confidence 99999999877999999999989999999999999999999999999999999999999999999987654
No 14
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=100.00 E-value=4.8e-50 Score=474.86 Aligned_cols=305 Identities=26% Similarity=0.471 Sum_probs=283.7
Q ss_pred cccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCc
Q psy14505 538 LIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSR 617 (1619)
Q Consensus 538 li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~ 617 (1619)
||++|+++|++|++|||||+++++|++|.++ +++++++|.+.+++.|++||+|+|||+.|++|++++++||+++|
T Consensus 1 lI~~e~~~v~lT~~G~IKr~~~~~~~~~~~~-----~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r 75 (323)
T 1wp5_A 1 MVASEDVIVTVTKDGYVKRTSLRSYAASNGQ-----DFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRW 75 (323)
T ss_dssp CCSCCEEEEEEETTCEEEEEEHHHHHHTTTC-----CCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCT
T ss_pred CccCCcEEEEEeCCCEEEEeEHHHhhhcCcc-----ccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCC
Confidence 6899999999999999999999999988543 67899999999999999999999999999999999999999999
Q ss_pred cCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCC-CCCceeeecCCCCeEEEEEE
Q psy14505 618 NSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPR-KSGIIAVNLSNEDFLIGAAL 696 (1619)
Q Consensus 618 ~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~-r~G~~~~~lke~D~l~~~~~ 696 (1619)
+++|.|+.++++++++|+|++++++ +++.++++++++|++||+||+++++|..++ +.|+.+++|+++|+++++..
T Consensus 76 ~a~G~~i~~~i~L~~~e~Iv~~~~~----~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r~~G~~ai~l~e~d~lv~~~~ 151 (323)
T 1wp5_A 76 KDLGQHIANIIPIDRDEEIIKAIPI----NDFELNGYFLFVTRNGMVKKTELKHYKAQRYSKPLTGINLKNDDQVVDVHL 151 (323)
T ss_dssp TSCCEEGGGTSCCCTTCCEEEEEEE----SCTTSSCEEEEEETTSEEEEEEGGGGCCSCCSSCEECSCCCTTCCEEEEEE
T ss_pred CCCCcChhhccCCCCCCEEEEEEEe----cccCCCceEEEEeCCCeEEEeEHHHhhhccccCceEEEEeCCCCEEEEEEE
Confidence 9999999999999999999999887 345557789999999999999999999887 56999999999999999999
Q ss_pred ecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEecCCCC-cEEEEEecCceeEEecccccccc
Q psy14505 697 TDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQ-SVLTATENGYGKRTLIKEYTKHN 775 (1619)
Q Consensus 697 ~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~~~-~ll~~T~~G~~Kr~~l~e~~~~~ 775 (1619)
++++++|+++|++|+++||++++||+++|.++||++|+|++||+|+++..+++ +. .++++|++|++||+++++|+.++
T Consensus 152 ~~~~~~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~-~~~~ll~vt~~G~gKr~~~~e~~~~~ 230 (323)
T 1wp5_A 152 TDGMNELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITS-KDESIVVATQRGAVKKMKLTEFEKAT 230 (323)
T ss_dssp ECSCSEEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECC-TTCEEEEEETTSEEEEEEGGGSCCCC
T ss_pred eCCCCEEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcC-CCcEEEEEECCCceEEEEHHHccccC
Confidence 99999999999999999999999999999999999999999999999988865 34 79999999999999999999999
Q ss_pred cccccceeee-eccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCcccccCCCCCCeEEEEcCCCceEEEEEEeecc
Q psy14505 776 RGTKGIISIK-TNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKI 852 (1619)
Q Consensus 776 R~~kG~~~ik-l~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~eI~~~gr~a~Gv~~i~L~~~d~v~~~~~~~~~ 852 (1619)
|+++|+.+++ +++.++.|+++..++++++++++|++|+++||++++||.+||+++||++|+++++|+|+++..+++.
T Consensus 231 Rg~kGv~~~~~~~~~~~~l~~~~~v~~~~~i~~it~~g~~ir~~~~~i~~~~R~t~Gv~l~~~~~~~~v~~~~~~~~~ 308 (323)
T 1wp5_A 231 RAKRGVVILRELKANPHRISGFVVAQDSDTIYLQTEKSFIETIKVGDIRFSDRYSNGSFVLDEEENGRVISVWKVEAE 308 (323)
T ss_dssp TTSCCEECSCCCSSSCCCEEEEEEECTTCEEEEEETTSCEEEEEGGGSCBCCSSSCCEESSCHHHHCCEEEEEEECSS
T ss_pred CCCCCEECeeecCCCCceEEEEEEeCCCCeEEEEeCCCeEEEEEhhhcCccCccCCCeEEEEcCCCCEEEEEEEecCc
Confidence 9999999997 4443568999999988999999999999999999999999999999999999999999999887654
No 15
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=100.00 E-value=6.6e-48 Score=456.00 Aligned_cols=309 Identities=28% Similarity=0.540 Sum_probs=276.1
Q ss_pred ccccccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCC
Q psy14505 535 TEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQ 614 (1619)
Q Consensus 535 ~~~li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~ 614 (1619)
.|+||++|+++|++|++|||||+++++|++|+++++|..+++++++|.+.+++.|++||+++|||+.|++|++++++||+
T Consensus 1 ~edli~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~ 80 (312)
T 1suu_A 1 MSDLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKD 80 (312)
T ss_dssp -------CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC
T ss_pred CccccCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEE
Q psy14505 615 GSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGA 694 (1619)
Q Consensus 615 ~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~ 694 (1619)
++|+++|.|+.+++++.+||++++++++ .++.++++++++|++||+||+++++|...++.|..+++|+++|.++++
T Consensus 81 ~~r~~~G~~i~~~l~l~~~e~i~~~~~~----~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r~~G~~~i~L~~~d~lv~~ 156 (312)
T 1suu_A 81 SSRASKGQNISELINLGDQEEILTIKNS----KDLTDDAYLLLTTASGKIARFESTDFKAVKSRGVIVIKLNDKDFVTSA 156 (312)
T ss_dssp -------CBGGGTSCCCTTCCEEEEEEE----SCCCTTCEEEEEETTSEEEEEEGGGGCC----CEECBCCCTTCCEEEE
T ss_pred CCccCCCcChhhccCCCCCCEEEEEEEe----ccCCCCCEEEEEeCCCeEEEEEHHHhhccCCCcEEEEecCCCCEEEEE
Confidence 9999999999999999999999999887 344567789999999999999999998887779999999999999999
Q ss_pred EEecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEecCCCCcEEEEEecCceeEEeccccccc
Q psy14505 695 ALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKH 774 (1619)
Q Consensus 695 ~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~ 774 (1619)
..++.+++++++|++|+++||+++++|.++|.++|+++|+|.+||+|+++..+++ ++.++++|++|++|++++++|+..
T Consensus 157 ~~~~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~-~~~l~~vt~~G~~kr~~~~e~~~~ 235 (312)
T 1suu_A 157 EIVFKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKE-NPYLLIVSENGYGKRLNMSKISEL 235 (312)
T ss_dssp EEECTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTT-CSEEEEEETTSEEEEEEGGGSCBC
T ss_pred EEeCCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECC-CCeEEEEECCCceEEEEHHHhccc
Confidence 9998889999999999999999999999999999999999999999999988865 567999999999999999999999
Q ss_pred ccccccceeeeec-cCCCeEEEEEEecCCcEEEEEECCCeEEEEecCcccccCCCCCCeEEEEcCCCceEEEEEEe
Q psy14505 775 NRGTKGIISIKTN-KRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRL 849 (1619)
Q Consensus 775 ~R~~kG~~~ikl~-~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~eI~~~gr~a~Gv~~i~L~~~d~v~~~~~~ 849 (1619)
+|+++|++++++. ++++.++++..+.++++++++|++|+.+|+++++++.++|+++||++|+|+ +|+|+++..+
T Consensus 236 ~R~~kGv~~~~~~k~~~~~lv~~~~~~~~~~l~~~t~~g~~~r~~~~~i~~~~R~~~G~~l~~l~-~~~v~~~~~~ 310 (312)
T 1suu_A 236 KRGATGYTSYKKSDKKAGSVVDAIAVSEDDEILLVSKRSKALRTVAGKVSEQGKDARGIQVLFLD-NDSLVSVSKF 310 (312)
T ss_dssp CTTCCCEECSCTTCTTTCSEEEEEEECTTCEEEEEETTCEEEEEEGGGSCBCCTTCCCEECSCCS-SCCEEEEEEC
T ss_pred CCCCCCEEeeEccCCCCCeEEEEEEeCCCCEEEEEeCCCeEEEEEcccCCccCccCCCeEEEECC-CCEEEEEEEe
Confidence 9999999999987 556899998888899999999999999999999999999999999999999 9999988754
No 16
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=100.00 E-value=6.2e-45 Score=422.52 Aligned_cols=272 Identities=23% Similarity=0.304 Sum_probs=249.2
Q ss_pred ceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCccCCCc
Q psy14505 543 DMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGK 622 (1619)
Q Consensus 543 ~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~~~G~ 622 (1619)
+++|++|++||||+.. ++ +. +||.+.+++.|+|||+|+||||.|++|++++++||+.+|.+
T Consensus 2 ~vtvils~~Gwir~~~--------g~--~~------~gD~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~~~--- 62 (276)
T 3no0_A 2 SITVAVLQDGSIIPVE--------EL--PL------EKAPVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSKVS--- 62 (276)
T ss_dssp EEEEEEETTSEEEEGG--------GC--CS------SCCCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEECC---
T ss_pred cEEEEEcCCceeeecc--------CC--CC------CCCeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcccc---
Confidence 6899999999999842 11 11 89999999999999999999999999999999999986643
Q ss_pred cceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEecCCCe
Q psy14505 623 PIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYD 702 (1619)
Q Consensus 623 ~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~~~~d~ 702 (1619)
+ ++++|+++.+++ . ++ ++++++++|++||+||+++++|. ++++|+.+++|+++|+++.+..++++++
T Consensus 63 -----l-l~~~e~i~~v~~-~----~~-~~~~~v~~T~~G~iKr~~l~~~~-~~~~G~~~i~lkegD~l~~~~~~~~~~~ 129 (276)
T 3no0_A 63 -----L-KSREEKIVGAFI-R----EK-FGNRLLLATKKGYVKKIPLAEFE-YKAQGMPIIKLTEGDEVVSIASSVDETH 129 (276)
T ss_dssp -----C-SSTTCCEEEEEE-G----GG-SCSEEEEEETTSEEEEEEGGGTT-TCSTTEECSCCCTTCCEEEEEECCSSCE
T ss_pred -----c-CCCCCEEEEEEC-C----cC-CCCEEEEEeCCCEEEEEEHHHhh-hhcCCeEEEecCCCCEEEEEEEeCCCCE
Confidence 3 678999999987 3 23 56799999999999999999999 7788999999999999999999999999
Q ss_pred EEEEeCCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEecCCCCcEEEEEecCceeEEecccccccccccccce
Q psy14505 703 IMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGII 782 (1619)
Q Consensus 703 lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~ 782 (1619)
|++||++|++|+|++++||+++|.++|+++|+|++||+|+++.++++ +++++++|++|++||+++++|+..+|+++|+.
T Consensus 130 ill~T~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~vv~~~~~~~-~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~ 208 (276)
T 3no0_A 130 ILLFTKKGRVARFSVREVPPSTPGARGVQGIKLEKNDETSGLRIWNG-EPYLLVITAKGRVKKISHEEIPKTNRGVKGTE 208 (276)
T ss_dssp EEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEESS-CSEEEEEETTSCEEEEEGGGSCCCCTTCCCEE
T ss_pred EEEEECCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEEEEEEEeCC-CCEEEEEeCCCcEEEeEHHHcccCCCCCcceE
Confidence 99999999999999999999999999999999999999999998876 57899999999999999999999999999999
Q ss_pred eeeeccCCCeEEEEEEecCCcEEEEEECCCeEEE--EecCcccccCCCCCCeEEEEcCCCceEEEEEEeec
Q psy14505 783 SIKTNKRNGKVVAATLVNRYHEIMLITTGGILIR--TRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCK 851 (1619)
Q Consensus 783 ~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lr--f~~~eI~~~gr~a~Gv~~i~L~~~d~v~~~~~~~~ 851 (1619)
++ . ++|+|+++..++++++++++|++|+++| |++++||.+||+++||++|+|++ |+|+++..+++
T Consensus 209 ~i--~-~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~~~~~~i~~~~R~~~Gv~~i~l~~-d~v~~~~~~~~ 275 (276)
T 3no0_A 209 VS--G-TKDTLVDLIPIKEEVELLITTKNGKAFYDKINQKDIPLSTKKSIPRTRWKLED-DEIIKVVIKKS 275 (276)
T ss_dssp CC--C-SSSCEEEEEEESSEEEEEEEETTSCEEEEEEEGGGSCBCCTTSCCC-CCCCTT-CCEEEEEEEEE
T ss_pred EE--c-CCCcEEEEEEeCCCCEEEEEcCCCeEEEeeeCHHHCCCcCCCCCCEEeEEcCC-CEEEEEEEecC
Confidence 88 3 4789999999988899999999999999 99999999999999999999999 99999988864
No 17
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=100.00 E-value=1e-38 Score=358.91 Aligned_cols=215 Identities=33% Similarity=0.539 Sum_probs=204.5
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceec----CceEEeCCc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFL----GKEVYLNGV 935 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 935 (1619)
++|++.|++|+||+|+++.+++++|++|+|+|.+||++++++++.|+++.+++.+.+++.+..+.|. +..++++|+
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g~ 89 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAGE 89 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECCe
Confidence 5799999999999999999999999999999999999999999999999999999999999888874 247999999
Q ss_pred cccccccccccccccccccccHHHHHHHHHHHHhhhcC-CCeEEeccccCeeeecCCCeEEEEEcCHHHHHHhchHHHHh
Q psy14505 936 NVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKF-PGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQ 1014 (1619)
Q Consensus 936 ~v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~-~~~V~~GRd~~~~v~p~a~~kifl~A~~e~Ra~Rr~~~l~~ 1014 (1619)
+|+..||+++++..+|.+|.+|.||+++.+.||++|++ ++|||+||||||+|||+|++||||+||+++|++||++||..
T Consensus 90 ~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~V~pda~lkifl~A~~e~Ra~Rr~~~l~~ 169 (233)
T 3r20_A 90 DVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTVVLPDADVKIFLTASAEERARRRNAQNVA 169 (233)
T ss_dssp ECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred ehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeEEcCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999998 99999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhhh
Q psy14505 1015 KGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLF 1074 (1619)
Q Consensus 1015 ~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ll 1074 (1619)
++++.++++++++|++||+.|++|..+|+.+++||++||||.|+++++++.|+++++..+
T Consensus 170 ~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~i~~~~ 229 (233)
T 3r20_A 170 NGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLDLVTAQA 229 (233)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHHHHC----
T ss_pred ccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999999999999999999999999999999998876543
No 18
>3l6v_A GYRA, DNA gyrase subunit A; gyrase A C-terminal domain, GYRA C-terminal domain, DNA wrapping, beta-strand-bearing proline, ATP-binding; HET: DNA; 2.19A {Xanthomonas campestris PV}
Probab=100.00 E-value=2e-34 Score=346.03 Aligned_cols=201 Identities=24% Similarity=0.347 Sum_probs=187.8
Q ss_pred CCCCCCcEEEEEeCCceEEEeeCCCCcCCCCC--CceeeecCCCCeEEEEEEecCCCeEEEEeCCceEEEEecccccccC
Q psy14505 647 RDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKS--GIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMG 724 (1619)
Q Consensus 647 ~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~--G~~~~~lke~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~ 724 (1619)
+.+++++++|++|++|||||+++++|.+++++ |..+++++++|.+.+++.|+++++|+|||++|++|+|++++||+++
T Consensus 2 dlI~~e~~~v~lT~~GyIKr~~l~~y~~~~r~g~g~~~~~lke~D~l~~~~~~~t~d~ll~fT~~G~~~~~~~~eip~~~ 81 (370)
T 3l6v_A 2 DLIAPEDVVVTLSHAGYAKRQPVSAYRAQRRGGRGRSAASTKEEDFIDQLWLVNTHDTLLTFTSSGKVFWLPVHQLPEAG 81 (370)
T ss_dssp CCCCCCCEEEEEESSCEEEEEEHHHHHHTCCCCCCSEEEECSCCCCEEEEEEECTTCEEEEEETTSEEEEEEGGGSCBCC
T ss_pred CcccCCCEEEEEeCCCEEEEeeHHHhhhhccCCCCceecccCCCCEEEEEEEecCCCEEEEEeCCCeEEEEEHHHCcCCC
Confidence 35789999999999999999999999998876 7889999999999999999999999999999999999999999999
Q ss_pred CCCCCccc---eecCCCCEEEEEEEecCC--CCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEe
Q psy14505 725 RSARGVIG---MRLEKKQKVIALLVSNNQ--KQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLV 799 (1619)
Q Consensus 725 r~a~Gv~~---i~L~~~e~Iv~~~~~~~~--~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~ 799 (1619)
|+++|+++ ++|.+||+|++++++.++ +.+++++|++|++||+++++|...+ ++|+.+|+|++ +|+|+++..+
T Consensus 82 r~a~G~~i~~ll~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~vKrt~l~e~~~~~--~~G~~ai~L~~-~d~lv~v~~~ 158 (370)
T 3l6v_A 82 SNARGRPIINWIPLESGERVQAVLPVREYADNRYVFMATRNGTVKKTPLSEFAFRL--ARGKIAINLDE-GDALVGVALT 158 (370)
T ss_dssp TTSCCEEGGGSCCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCSCC--TTCEESSCCCT-TCCEEEEEEE
T ss_pred cccCCcCHhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEeEHHHhhccc--CCceEEEEeCC-CCEEEEEEEe
Confidence 99999776 467999999999998753 4589999999999999999999754 47999999987 8999999999
Q ss_pred cCCcEEEEEECCCeEEEEecCcccccCCCCCCeEEEEcCCCceEEEEEEee
Q psy14505 800 NRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLC 850 (1619)
Q Consensus 800 ~~~~~i~l~T~~g~~lrf~~~eI~~~gr~a~Gv~~i~L~~~d~v~~~~~~~ 850 (1619)
+++++|+++|++|+++||++++||+|||+|+||++|+|+++|+|+++..++
T Consensus 159 ~~~~~i~l~T~~G~~irf~~~~v~~~gR~a~GV~~i~L~~~d~Vv~~~~~~ 209 (370)
T 3l6v_A 159 DGDRDVLLFASNGKTVRFGESTVRSMGRTATGVRGIRLAKGEEVVSLIVSE 209 (370)
T ss_dssp CSCCEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEEEEC
T ss_pred CCCceEEEEeCCCeEEEEEccccCccCCCCCCeeeEEeCCCCEEEEEEEec
Confidence 999999999999999999999999999999999999999999999998886
No 19
>1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli}
Probab=100.00 E-value=6.1e-33 Score=327.30 Aligned_cols=218 Identities=25% Similarity=0.351 Sum_probs=179.4
Q ss_pred CCCcEEEEEeCCceEEEeeCCCCcCCCCC--CceeeecCCCCeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCCC
Q psy14505 650 PKNNYVFMSTSLGIVKKTLLSNFSNPRKS--GIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSA 727 (1619)
Q Consensus 650 ~~e~~~v~iT~~G~iKr~~~~~~~~~~r~--G~~~~~lke~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a 727 (1619)
+++++++++|++|||||+++++|+.++++ |..+++++++|++.+++.|+++++|+|||++|++|+|++++||+++|++
T Consensus 1 ~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a 80 (307)
T 1zi0_A 1 TQEDVVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGA 80 (307)
T ss_dssp CCCEEEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSS
T ss_pred CCCcEEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCC
Confidence 46789999999999999999999998875 7889999999999999999999999999999999999999999999999
Q ss_pred CCccc---eecCCCCEEEEEEEecCC--CCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCC
Q psy14505 728 RGVIG---MRLEKKQKVIALLVSNNQ--KQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRY 802 (1619)
Q Consensus 728 ~Gv~~---i~L~~~e~Iv~~~~~~~~--~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~ 802 (1619)
+|+++ ++|.+||+|++++++.++ +.+++++|++|++||+++++|...+| +|+.+++|++ +|+|+++..++++
T Consensus 81 ~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r--~G~~~i~l~~-~d~lv~~~~~~~~ 157 (307)
T 1zi0_A 81 RGRPIVNLLPLEQDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRT--AGKVAIKLVD-GDELIGVDLTSGE 157 (307)
T ss_dssp CCEEGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCT--TCEESSCCCT-TCCEEEEEEECTT
T ss_pred CCeEhhhccCCCCCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhcccc--CCeEEEEECC-CCEEEEEEEeCCC
Confidence 99964 688999999999987643 45799999999999999999998765 7999999998 6999999999999
Q ss_pred cEEEEEECCCeEEEEecCcccccCCCCCCeEEEEcCCCceEEEEEEeeccccccccccEEEecCCcCCCCchhHH
Q psy14505 803 HEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKITMIKKYIPVITIDGPTASGKGTVAQ 877 (1619)
Q Consensus 803 ~~i~l~T~~g~~lrf~~~eI~~~gr~a~Gv~~i~L~~~d~v~~~~~~~~~~~~k~~~~iIti~g~~gsGK~~~~~ 877 (1619)
++|+++|++|+++||++++||.+||+|+||++|+|+++|+|+++..+.++ ..++++| ..|.||++...
T Consensus 158 ~~i~l~T~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~----~~ll~~T---~~G~~Kr~~~~ 225 (307)
T 1zi0_A 158 DEVMLFSAEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVPRGD----GAILTAT---QNGYGKRTAVA 225 (307)
T ss_dssp CEEEEEETTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECCCSS----CEEEEEE---TTSEEEEECGG
T ss_pred CEEEEECCCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEecCC----CEEEEEE---cCCceEEEEHH
Confidence 99999999999999999999999999999999999999999998877543 2455666 44778777543
No 20
>1wp5_A Topoisomerase IV; broken beta-propeller, hairpin-invaded beta-propeller, six- bladed beta-propeller; 1.79A {Geobacillus stearothermophilus} SCOP: b.68.10.1
Probab=100.00 E-value=5.5e-33 Score=328.90 Aligned_cols=218 Identities=19% Similarity=0.265 Sum_probs=194.3
Q ss_pred CCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCCCC
Q psy14505 649 FPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSAR 728 (1619)
Q Consensus 649 ~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~ 728 (1619)
+++++++|++|++|||||+++++|..+.++ +++++++|.+.+++.|+++++|+|||+.|++|+|++++||+++|+++
T Consensus 2 I~~e~~~v~lT~~G~IKr~~~~~~~~~~~~---~~~lke~D~l~~~~~~~t~d~ll~fT~~Gr~~~~~~~elp~~~r~a~ 78 (323)
T 1wp5_A 2 VASEDVIVTVTKDGYVKRTSLRSYAASNGQ---DFAMKDTDRLLAMLEMNTKDVLLLFTNKGNYLYCPVHELPDIRWKDL 78 (323)
T ss_dssp CSCCEEEEEEETTCEEEEEEHHHHHHTTTC---CCCCCTTCCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCTTSC
T ss_pred ccCCcEEEEEeCCCEEEEeEHHHhhhcCcc---ccccCCCCEEEEEEEECCCCEEEEEECCCEEEEEEHHHCcCCCCCCC
Confidence 578899999999999999999999876543 57899999999999999999999999999999999999999999999
Q ss_pred Cc---cceecCCCCEEEEEEEecCC--CCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCc
Q psy14505 729 GV---IGMRLEKKQKVIALLVSNNQ--KQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYH 803 (1619)
Q Consensus 729 Gv---~~i~L~~~e~Iv~~~~~~~~--~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~ 803 (1619)
|+ .+++|.+||+|+++++++++ +.+++++|++|++||+++++|...+| ++|+.++++++ +|+|+++..+++++
T Consensus 79 G~~i~~~i~L~~~e~Iv~~~~~~~~~~~~~ll~~T~~G~iKrt~l~e~~~~~r-~~G~~ai~l~e-~d~lv~~~~~~~~~ 156 (323)
T 1wp5_A 79 GQHIANIIPIDRDEEIIKAIPINDFELNGYFLFVTRNGMVKKTELKHYKAQRY-SKPLTGINLKN-DDQVVDVHLTDGMN 156 (323)
T ss_dssp CEEGGGTSCCCTTCCEEEEEEESCTTSSCEEEEEETTSEEEEEEGGGGCCSCC-SSCEECSCCCT-TCCEEEEEEECSCS
T ss_pred CcChhhccCCCCCCEEEEEEEecccCCCceEEEEeCCCeEEEeEHHHhhhccc-cCceEEEEeCC-CCEEEEEEEeCCCC
Confidence 99 56789999999999988763 45799999999999999999998876 78999999998 69999999999999
Q ss_pred EEEEEECCCeEEEEecCcccccCCCCCCeEEEEcCCCceEEEEEEeeccccccccccEEEecCCcCCCCchhHH
Q psy14505 804 EIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKITMIKKYIPVITIDGPTASGKGTVAQ 877 (1619)
Q Consensus 804 ~i~l~T~~g~~lrf~~~eI~~~gr~a~Gv~~i~L~~~d~v~~~~~~~~~~~~k~~~~iIti~g~~gsGK~~~~~ 877 (1619)
+|+++|++|+++||++++||++||+|+||++|+|+++|+|+++..+.+++ ..+++++ ..|.||++...
T Consensus 157 ~i~l~T~~G~~irf~~~ev~~~gR~a~GV~~i~L~~~d~Vv~~~~~~~~~---~~ll~vt---~~G~gKr~~~~ 224 (323)
T 1wp5_A 157 ELFLVTHNGYALWFDESEVSIVGVRAAGVKGMNLKEGDYIVSGQLITSKD---ESIVVAT---QRGAVKKMKLT 224 (323)
T ss_dssp EEEEEETTSEEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEECCTT---CEEEEEE---TTSEEEEEEGG
T ss_pred EEEEEeCCCcEEEEEHHHCcccCCCCcCEEEEEeCCCCEEEEEEEEcCCC---cEEEEEE---CCCceEEEEHH
Confidence 99999999999999999999999999999999999999999998876431 1355566 34667766554
No 21
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=100.00 E-value=1.2e-32 Score=315.58 Aligned_cols=222 Identities=16% Similarity=0.308 Sum_probs=197.5
Q ss_pred CcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCccCC
Q psy14505 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSR 620 (1619)
Q Consensus 541 ~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~~~ 620 (1619)
+|+++|++|++|||||++...| +..+++++++|.+.+++.|++||+|+|||+.|++|++++++||.+ +++
T Consensus 1 ~E~v~v~lT~~G~iKr~~~~~~--------~~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~--r~~ 70 (256)
T 1zvt_A 1 SEPVTIVLSQMGWVRSAKGHDI--------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQ 70 (256)
T ss_dssp CCEEEEEEETTSEEEEEESSCC--------CSTTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS--SSC
T ss_pred CCCEEEEEeCCCEEEEeeCCcC--------CceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc--CCC
Confidence 5899999999999999987665 356789999999999999999999999999999999999999998 469
Q ss_pred CccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEe-cC
Q psy14505 621 GKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALT-DG 699 (1619)
Q Consensus 621 G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~-~~ 699 (1619)
|.|+.+++++.+||+++++++. +++++++++|++||+||+++++|..++++|+.+++|+++|.|+.+..+ +.
T Consensus 71 G~~i~~~i~L~~~e~Iv~~~~~-------~~~~~lll~T~~G~~Kr~~~~e~~~~~r~G~~~i~L~~~d~lv~~~~~~~~ 143 (256)
T 1zvt_A 71 GEPLTGKLTLPPGATVDHMLME-------SDDQKLLMASDAGYGFVCTFNDLVARNRAGKALITLPENAHVMPPVVIEDA 143 (256)
T ss_dssp CEEGGGTCCCCTTCCEEEEECC-------CTTCEEEEEBTTSEEEEEEGGGGCCCSTTCEECBCCCTTCCBCCCEECCCT
T ss_pred CeEeeeeecCCCCCEEEEEEEe-------CCCCEEEEEeCCCeEEEeEHHHhcccCcCceEEEEECCCCEEEEEEEecCC
Confidence 9999999999999999999876 346679999999999999999999988999999999999999999999 67
Q ss_pred CCeEEEEeCCceEEEEecccccccCCCCCCccceecC------CCCEEEEEEEecCCCCcEEEEEecCcee-EEe---cc
Q psy14505 700 SYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLE------KKQKVIALLVSNNQKQSVLTATENGYGK-RTL---IK 769 (1619)
Q Consensus 700 ~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~------~~e~Iv~~~~~~~~~~~ll~~T~~G~~K-r~~---l~ 769 (1619)
+++|+++|++|+++||++.+||.++| ++||++|+|+ ++|+|+++..+.+ +. .++++ +|++| +.. +.
T Consensus 144 ~~~i~l~T~~G~~lrf~~~ei~~~gR-a~GV~~i~L~~~~~k~~~d~Vv~~~~~~~-~~-~l~~~-~g~~k~~~~~~~~~ 219 (256)
T 1zvt_A 144 SDMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPP-QS-TLTIH-VGKRKIKLRPEELQ 219 (256)
T ss_dssp TCEEEEEETTSEEEEEEGGGSCBCSS-BSCEESSCCCHHHHHTTSSCEEEEEEEC--CC-EEEEE-ETTEEEEECHHHHH
T ss_pred CCEEEEEcCCCeEEEEEHHHCCCcCc-cCCeEEEEcccccCCCCCCEEEEEEEECC-CC-EEEEE-eCcceEEecHHHhh
Confidence 88999999999999999999999999 9999999999 9999999988765 33 45555 89998 444 55
Q ss_pred cccccccccccceeee
Q psy14505 770 EYTKHNRGTKGIISIK 785 (1619)
Q Consensus 770 e~~~~~R~~kG~~~ik 785 (1619)
+|+ ++|+++|+ +.+
T Consensus 220 ~y~-~~Rg~~G~-l~~ 233 (256)
T 1zvt_A 220 KVT-GERGRRGT-LMR 233 (256)
T ss_dssp TTB-CCTTSCCE-ECT
T ss_pred hhc-cCCCCCCc-cCc
Confidence 555 78999999 654
No 22
>1suu_A DNA gyrase subunit A; topoisomerase,DNA gyrase, beta-propeller, beta-pinwheel, ISO; HET: DNA; 1.75A {Borrelia burgdorferi} SCOP: b.68.10.1
Probab=100.00 E-value=4.6e-32 Score=320.53 Aligned_cols=221 Identities=19% Similarity=0.286 Sum_probs=185.3
Q ss_pred CCCCCCcEEEEEeCCceEEEeeCCCCcCCCCC--CceeeecCCCCeEEEEEEecCCCeEEEEeCCceEEEEecccccccC
Q psy14505 647 RDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKS--GIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMG 724 (1619)
Q Consensus 647 ~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~--G~~~~~lke~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~ 724 (1619)
+.++++++++++|++||+||+++++|..++++ |..+++++++|++++++.|++++++++||++|++|+|++++||+++
T Consensus 3 dli~~e~~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~lke~D~l~~~~~~~~~~~ll~~T~~G~~~~~~~~~ip~~~ 82 (312)
T 1suu_A 3 DLMQKENIVVMLTKKGFLKRLSQNEYKLQGTGGKGLSSFDLNDGDEIVIALCVNTHDYLFMISNEGKLYLINAYEIKDSS 82 (312)
T ss_dssp -----CEEEEEEETTCBEEEEEGGGSCBCCSSCCCEECCCCCTTCCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCC--
T ss_pred cccCCCCEEEEEeCCCEEEEeEHHHhhccccCCCCceecccCCCCEEEEEEEECCCCEEEEEECCCeEEEEEHHHCCCCC
Confidence 35678999999999999999999999998875 8889999999999999999999999999999999999999999999
Q ss_pred CCCCCcc---ceecCCCCEEEEEEEecCC--CCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEe
Q psy14505 725 RSARGVI---GMRLEKKQKVIALLVSNNQ--KQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLV 799 (1619)
Q Consensus 725 r~a~Gv~---~i~L~~~e~Iv~~~~~~~~--~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~ 799 (1619)
|.++|++ +++|++||+|+++++++++ +++++++|++|++||+++++|+..+ ++|+.+++|++ +|+|+++..+
T Consensus 83 r~~~G~~i~~~l~l~~~e~i~~~~~~~~~~~~~~ll~~T~~G~~kr~~l~~~~~~r--~~G~~~i~L~~-~d~lv~~~~~ 159 (312)
T 1suu_A 83 RASKGQNISELINLGDQEEILTIKNSKDLTDDAYLLLTTASGKIARFESTDFKAVK--SRGVIVIKLND-KDFVTSAEIV 159 (312)
T ss_dssp -----CBGGGTSCCCTTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGCC------CEECBCCCT-TCCEEEEEEE
T ss_pred ccCCCcChhhccCCCCCCEEEEEEEeccCCCCCEEEEEeCCCeEEEEEHHHhhccC--CCcEEEEecCC-CCEEEEEEEe
Confidence 9999998 5889999999999998642 5789999999999999999998664 58999999998 8999999999
Q ss_pred cCCcEEEEEECCCeEEEEecCcccccCCCCCCeEEEEcCCCceEEEEEEeeccccccccccEEEecCCcCCCCchhHH
Q psy14505 800 NRYHEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVENKSKLCGVQRLCKITMIKKYIPVITIDGPTASGKGTVAQ 877 (1619)
Q Consensus 800 ~~~~~i~l~T~~g~~lrf~~~eI~~~gr~a~Gv~~i~L~~~d~v~~~~~~~~~~~~k~~~~iIti~g~~gsGK~~~~~ 877 (1619)
+++++++++|++|+++||+++++|.+||+++||++|+|+++|+|+++..++++ ..+++++- .|.++++...
T Consensus 160 ~~~~~i~l~T~~G~~~r~~~~ev~~~gR~~~Gv~~i~L~~~d~vv~~~~v~~~----~~l~~vt~---~G~~kr~~~~ 230 (312)
T 1suu_A 160 FKDEKVICLSKKGSAFIFNSRDVRLTNRGTQGVCGMKLKEGDLFVKVLSVKEN----PYLLIVSE---NGYGKRLNMS 230 (312)
T ss_dssp CTTCEEEEEETTSEEEEEEGGGSCBCCTTBCCEECCCCCTTCCEEEEEECTTC----SEEEEEET---TSEEEEEEGG
T ss_pred CCCCEEEEEeCCCcEEEEEHHHccccCCCCCCeEeEEeCCCCEEEEEEEECCC----CeEEEEEC---CCceEEEEHH
Confidence 88899999999999999999999999999999999999999999999888543 24555663 3555555443
No 23
>3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis}
Probab=99.98 E-value=2e-32 Score=324.34 Aligned_cols=218 Identities=20% Similarity=0.349 Sum_probs=194.3
Q ss_pred CCcEEEEEeCCceEEEeeCCCCcCCCCC--CceeeecCCCCeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCCCC
Q psy14505 651 KNNYVFMSTSLGIVKKTLLSNFSNPRKS--GIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSAR 728 (1619)
Q Consensus 651 ~e~~~v~iT~~G~iKr~~~~~~~~~~r~--G~~~~~lke~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~ 728 (1619)
+|+++|++|++|||||+++++|+.++|+ |..+++++++|.+.+++.|+++++++|||++|++|++++++||+++|+++
T Consensus 2 ~E~v~v~ls~~GyiKr~~~~~y~~~~rgg~g~~~~~~ke~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~ 81 (327)
T 3uc1_A 2 AEDVVVTITETGYAKRTKTDLYRSQKRGGKGVQGAGLKQDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTAR 81 (327)
T ss_dssp CCEEEEEEETTSEEEEEEHHHHHHHC--------CCCCGGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSC
T ss_pred CccEEEEEeCCCEEEEeeHHHhhhcccCCCCccccccCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCC
Confidence 5789999999999999999999999876 67889999999999999999999999999999999999999999999999
Q ss_pred Cccc---eecCCCCEEEEEEEecCC--CCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCc
Q psy14505 729 GVIG---MRLEKKQKVIALLVSNNQ--KQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYH 803 (1619)
Q Consensus 729 Gv~~---i~L~~~e~Iv~~~~~~~~--~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~ 803 (1619)
|+++ +.|++||+|+++++++++ +.+++++|++||+||+++++|..++| +|+.++++++ +|+|+++..++..+
T Consensus 82 G~~i~~~l~l~~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r--~G~~~i~lke-~D~lv~~~~~~~~d 158 (327)
T 3uc1_A 82 GQHVANLLAFQPEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS--GGIVAVNLRD-NDELVGAVLCSAGD 158 (327)
T ss_dssp CEEHHHHTTCCTTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS--SCEESCBCCT-TCCEEEEEEECTTC
T ss_pred CEEHHHccCCCCCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc--CceEEEEECC-CCEEEEEEEecCCC
Confidence 9885 778999999999999864 57899999999999999999997765 6999999998 89999999999999
Q ss_pred EEEEEECCCeEEEEecC--cccccCCCCCCeEEEEcCCCceEEEEEEeeccccccccccEEEecCCcCCCCchhHHH
Q psy14505 804 EIMLITTGGILIRTRVS--EIRKMGRSTQGVILITVENKSKLCGVQRLCKITMIKKYIPVITIDGPTASGKGTVAQL 878 (1619)
Q Consensus 804 ~i~l~T~~g~~lrf~~~--eI~~~gr~a~Gv~~i~L~~~d~v~~~~~~~~~~~~k~~~~iIti~g~~gsGK~~~~~~ 878 (1619)
+|+++|++|+++||+++ +||++||.++||++|+|+++|+|+++..++++ ..++++| ..|.+|++....
T Consensus 159 ~ill~T~~G~~~rf~~~~~eip~~gr~a~Gv~~i~L~~~d~Vv~~~~~~~~----~~ll~~T---~~G~~Krt~l~e 228 (327)
T 3uc1_A 159 DLLLVSANGQSIRFSATDEALRPMGRATSGVQGMRFNIDDRLLSLNVVREG----TYLLVAT---SGGYAKRTAIEE 228 (327)
T ss_dssp EEEEEETTSEEEEEECCTTTSCCCCTTSBCEESSCCCTTCCEEEEEECCTT----CEEEEEE---TTSEEEEEEGGG
T ss_pred EEEEEECCCeEEEEECcccccCcCCcCCCCeeeecCCCCCEEEEEEEECCC----CEEEEEe---CCCcEEEEEHHH
Confidence 99999999999999999 99999999999999999999999999988654 3566667 447888776543
No 24
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.97 E-value=9e-30 Score=292.98 Aligned_cols=217 Identities=17% Similarity=0.184 Sum_probs=190.7
Q ss_pred CCCcEEEEEEEEEecCeEEEEeCCEEEEeeccccCccccCCCccccccCCEEEEEEEEeecCCCeEEEeeeccccCCccc
Q psy14505 1255 KEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDPWIG 1334 (1619)
Q Consensus 1255 ~~G~iv~g~V~~v~~~G~~V~l~gi~g~l~~sels~~~~~~~~~~~~vG~~v~vrVl~vd~~~~~i~LSlK~~~~~~~~~ 1334 (1619)
.+|++++|+|+++.++|+||++++.+||||.++++. ++||+++|.|+ .|.+ +++.+|.+. |
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~g~egllp~se~~~----------~vGdevev~v~-~d~~-~r~iat~~~----p--- 65 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKDGQTYALAKEEGQH----------TVGDTVKGFAY-TDMK-QKLRLTTLE----V--- 65 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEETTEEEEEEGGGCCC----------CTTSEEEEEEE-ECTT-SCEEEECSC----C---
T ss_pred cCCCEEEEEEEEEECCEEEEEcCCeEEEEEHHHCcc----------ccCCEEEEEEE-ECCC-CCEEEeccc----c---
Confidence 479999999999999999999999999999999942 69999999987 5754 566677542 3
Q ss_pred cccccccceeEEEEEEEEc-CCeEEEEEcC-CEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeee
Q psy14505 1335 LSFRYPRGTRLLGKVTNLT-DYGAFVEIEK-GIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMK 1412 (1619)
Q Consensus 1335 ~~~~l~~G~iv~g~V~~v~-~~G~fV~l~~-gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK 1412 (1619)
.+++|+++.|+|++++ ++|+||+++. +.+||||.|+++|.. ...+++||+|.|. +.+|+ ++||.+|+|
T Consensus 66 ---~~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~-----~~~~~~Gd~v~v~-l~iD~-~~Ri~ls~k 135 (285)
T 3go5_A 66 ---TATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELK-----ELWPKKGDQLYIR-LEVDK-KDRIWGLLA 135 (285)
T ss_dssp ---CSCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSG-----GGSCCTTCEEEEE-EEECT-TSCEEEEEC
T ss_pred ---cccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCccc-----ccccCCCCEEEEE-EEECC-CCcEEEEeh
Confidence 3689999999999999 7999999986 799999999999932 2356899999766 68998 789999999
Q ss_pred cc-cCCCCcccccccccceEEEEEEEEEecceEEE-eeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecC
Q psy14505 1413 QC-KDNPWENFSIIHKKGEKIKGIIKSITDFGIFI-GLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVE 1490 (1619)
Q Consensus 1413 ~~-~~~~~~~~~~~~~vG~~v~G~V~~i~~~GvfV-~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e 1490 (1619)
++ ..+||......|++|+.|+|+|.+++++|+|| .+.+++.||||.||+++ .+++||.|+|+|++||++
T Consensus 136 ~~~~~~~~~~~~~~~~~G~~V~g~V~~i~~~G~fV~~i~~g~~Glih~SEl~~---------~l~~Gd~v~~~V~~id~~ 206 (285)
T 3go5_A 136 YQEDFQRLARPAYNNMQNQNWPAIVYRLKLSGTFVYLPENNMLGFIHPSERYA---------EPRLGQVLDARVIGFREV 206 (285)
T ss_dssp CHHHHHHHCCCCCSCCTTCEEEEEEEEEETTEEEEEETTTTEEEEECGGGCSS---------CCCTTCEEEEEEEEEETT
T ss_pred hhhhcchhhhhhhhCCCCCEEEEEEEEEeCCcEEEEEeCCCeEEEEEHHHccc---------cCCCCCEEEEEEEEEECC
Confidence 76 46889988889999999999999999999999 99999999999999983 489999999999999999
Q ss_pred CCeEEEeeecCcCCCcccc
Q psy14505 1491 KERISLGIKQLEGDPFNNY 1509 (1619)
Q Consensus 1491 ~~ri~LSlK~~~~~p~~~~ 1509 (1619)
++||.||+|+....++...
T Consensus 207 d~kI~LSlk~~~~~~~~~~ 225 (285)
T 3go5_A 207 DRTLNLSLKPRSFEMLEND 225 (285)
T ss_dssp TTEEEEECSCCCCCCCCHH
T ss_pred CCeEEEEeChhhhhccchH
Confidence 9999999999876665543
No 25
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.97 E-value=3.2e-30 Score=296.60 Aligned_cols=218 Identities=42% Similarity=0.713 Sum_probs=190.7
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecC----ceEEeCC
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLG----KEVYLNG 934 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~ 934 (1619)
..+|++.|++|+||+|+++.++++||+.++|+|.+||++++.++..|++..+...+.++.....+.+.. .++++++
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 106 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVSQNGQLQVILEG 106 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEEETTEEEEEETT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEecCCCCceEEECC
Confidence 357999999999999999999999999999999999999999999999887666677777777776632 3689999
Q ss_pred ccccccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeeecCCCeEEEEEcCHHHHHHhchHHHHh
Q psy14505 935 VNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQ 1014 (1619)
Q Consensus 935 ~~v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~p~a~~kifl~A~~e~Ra~Rr~~~l~~ 1014 (1619)
.++++.||.+++...+|.++.+|.||+.+.+.|++++.+++||++|||+++++||+++++|||+||+++|++||+++|..
T Consensus 107 ~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~v~~~~~~~ifl~A~~e~r~~R~~~~l~~ 186 (252)
T 4e22_A 107 EDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTIVFPDAPVKIFLDASSQERAHRRMLQLQE 186 (252)
T ss_dssp EECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCCCSTTCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred eehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceeceeecCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhhhhh
Q psy14505 1015 KGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLFKE 1076 (1619)
Q Consensus 1015 ~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ll~e 1076 (1619)
++.+.++++++++|.+||..|++|..+||.++.|+++||||.+++|++++.|.+++...+..
T Consensus 187 ~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~~~~ 248 (252)
T 4e22_A 187 RGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQRILAL 248 (252)
T ss_dssp HTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHHCC-
T ss_pred cCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHHHHHHHhhc
Confidence 99999999999999999999999999999999999999999999999999999988765543
No 26
>1zvt_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 1.70A {Escherichia coli}
Probab=99.96 E-value=1.3e-29 Score=290.48 Aligned_cols=189 Identities=16% Similarity=0.282 Sum_probs=170.2
Q ss_pred CCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCCCCCc
Q psy14505 651 KNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGV 730 (1619)
Q Consensus 651 ~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv 730 (1619)
+|++++++|++|||||+++++|. ..+++++++|.+++++.|+++++|+|||++|++|+|++++||.. +++|.
T Consensus 1 ~E~v~v~lT~~G~iKr~~~~~~~------~~~~~lke~D~l~~~~~~~t~~~ll~~T~~Gr~~~~~~~elp~~--r~~G~ 72 (256)
T 1zvt_A 1 SEPVTIVLSQMGWVRSAKGHDID------APGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--RGQGE 72 (256)
T ss_dssp CCEEEEEEETTSEEEEEESSCCC------STTSCCCTTCCEEEEEEEETTSCEEEEETTSEEEEECGGGSCCS--SSCCE
T ss_pred CCCEEEEEeCCCEEEEeeCCcCC------ceeccCCCCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCCCc--CCCCe
Confidence 46889999999999999998874 33578999999999999999999999999999999999999987 36887
Q ss_pred ---cceecCCCCEEEEEEEecCCCCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEe-cCCcEEE
Q psy14505 731 ---IGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLV-NRYHEIM 806 (1619)
Q Consensus 731 ---~~i~L~~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~-~~~~~i~ 806 (1619)
.+|+|.+||+|++++++++ +.+++++|++|++||++++||...+| +|+.+++|++ +|+|+++..+ +++++|+
T Consensus 73 ~i~~~i~L~~~e~Iv~~~~~~~-~~~lll~T~~G~~Kr~~~~e~~~~~r--~G~~~i~L~~-~d~lv~~~~~~~~~~~i~ 148 (256)
T 1zvt_A 73 PLTGKLTLPPGATVDHMLMESD-DQKLLMASDAGYGFVCTFNDLVARNR--AGKALITLPE-NAHVMPPVVIEDASDMLL 148 (256)
T ss_dssp EGGGTCCCCTTCCEEEEECCCT-TCEEEEEBTTSEEEEEEGGGGCCCST--TCEECBCCCT-TCCBCCCEECCCTTCEEE
T ss_pred EeeeeecCCCCCEEEEEEEeCC-CCEEEEEeCCCeEEEeEHHHhcccCc--CceEEEEECC-CCEEEEEEEecCCCCEEE
Confidence 4588999999999987755 56799999999999999999987665 5888999987 7999999998 6788999
Q ss_pred EEECCCeEEEEecCcccccCCCCCCeEEEEcC------CCceEEEEEEeecc
Q psy14505 807 LITTGGILIRTRVSEIRKMGRSTQGVILITVE------NKSKLCGVQRLCKI 852 (1619)
Q Consensus 807 l~T~~g~~lrf~~~eI~~~gr~a~Gv~~i~L~------~~d~v~~~~~~~~~ 852 (1619)
++|++|+++||++++||.||| |+||++|+|+ ++|+|+++..+.++
T Consensus 149 l~T~~G~~lrf~~~ei~~~gR-a~GV~~i~L~~~~~k~~~d~Vv~~~~~~~~ 199 (256)
T 1zvt_A 149 AITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQ 199 (256)
T ss_dssp EEETTSEEEEEEGGGSCBCSS-BSCEESSCCCHHHHHTTSSCEEEEEEEC-C
T ss_pred EEcCCCeEEEEEHHHCCCcCc-cCCeEEEEcccccCCCCCCEEEEEEEECCC
Confidence 999999999999999999999 9999999999 99999999887654
No 27
>3ku8_A GYRA14, DNA gyrase subunit A; alpha+beta, SH3 domain, topoisomerase, toxin-isomerase compl; HET: DNA; 1.93A {Escherichia coli} PDB: 4ely_A* 1x75_A* 3kua_A* 4elz_A*
Probab=99.96 E-value=3.4e-30 Score=264.43 Aligned_cols=142 Identities=36% Similarity=0.633 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHcCCCHHHHHHHHHhhcCCCCchhhhhhccccccccc
Q psy14505 355 ILHRKEVIKRRTIFELRKAREYAHILEGLTIALTNIDNFIQIIRSTSTPQEAKNKIIESTWNLPDVSKIIGFNKKNYNTI 434 (1619)
Q Consensus 355 ~~~R~~~~~rR~~~~l~k~~~r~~ileg~~~a~~~id~vi~iir~s~~~~~a~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 434 (1619)
+-||.+|++||++|+|+|+++|+||||||++|++|||+||++||+|+++++||++||+++|++..+..+++..++...++
T Consensus 14 ~~hR~eVVtRRt~f~L~Ka~~R~HILEGL~iAl~nIDeVI~iIR~S~~~~eAk~~Lm~~~w~~~~v~~~~~~~~~~~~~p 93 (156)
T 3ku8_A 14 LVPRGSHMTRRTIFELRKARDRAHILEALAVALANIDPIIELIRHAPTPAEAKTALVANPWQLGNVAAMLERAGDDAARP 93 (156)
T ss_dssp --------CCHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHCSSHHHHHHHHHHSCEECTTHHHHGGGSSTTTTSC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCHHHHHHHHHhccccchhHHHHHHHhhhhcccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999998888777777
Q ss_pred ccccccccccCCCccccCHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Q psy14505 435 SKINNISKLQNNDMYKLSDIQAQEILKMPLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSK 497 (1619)
Q Consensus 435 ~~~~~~~~~~~~~~~~~~~~Qa~aIL~m~L~~Lt~~e~~~l~~e~~~l~~~i~~l~~iL~~~~ 497 (1619)
..+++.++. .+..|+||+.||+|||+|||+|||+||++||.+|+++|.++|++|++||+|++
T Consensus 94 ~~~~~~~~~-~~~~f~LSe~QA~AILdmRL~rLT~LE~~ki~~E~~eL~~~I~~l~~IL~s~~ 155 (156)
T 3ku8_A 94 EWLEPEFGV-RDGLYYLTEQQAQAILDLRLQKLTGLEHEKLLDEYKELLDQIAELLRILGSAD 155 (156)
T ss_dssp TTCCTTSEE-ETTEEECCHHHHHHHHTCBGGGGSHHHHHHHHHHHHHHHHHHHHHHHTCCSCC
T ss_pred cccchhccc-cccCCCCCHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 777766554 34579999999999999999999999999999999999999999999999975
No 28
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=99.96 E-value=3.7e-28 Score=279.60 Aligned_cols=209 Identities=18% Similarity=0.203 Sum_probs=184.9
Q ss_pred ccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeecccCCCC
Q psy14505 1340 PRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPW 1419 (1619)
Q Consensus 1340 ~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~~~~~ 1419 (1619)
.+|++++|+|++++++|+||+++ +.+||+|.++++ . ++||+|+|.|+ .|. .+++.+|.+ .||
T Consensus 5 ~~G~~v~g~V~~~~~~G~fv~~~-g~egllp~se~~--------~---~vGdevev~v~-~d~-~~r~iat~~----~p~ 66 (285)
T 3go5_A 5 NLASFIVGLIIDENDRFYFVQKD-GQTYALAKEEGQ--------H---TVGDTVKGFAY-TDM-KQKLRLTTL----EVT 66 (285)
T ss_dssp TTTEEEEEEEEEECSSEEEEEET-TEEEEEEGGGCC--------C---CTTSEEEEEEE-ECT-TSCEEEECS----CCC
T ss_pred cCCCEEEEEEEEEECCEEEEEcC-CeEEEEEHHHCc--------c---ccCCEEEEEEE-ECC-CCCEEEecc----ccc
Confidence 57999999999999999999995 999999999983 1 79999999997 565 456666654 454
Q ss_pred cccccccccceEEEEEEEEEe-cceEEEeeCC-CeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEe
Q psy14505 1420 ENFSIIHKKGEKIKGIIKSIT-DFGIFIGLDG-NIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLG 1497 (1619)
Q Consensus 1420 ~~~~~~~~vG~~v~G~V~~i~-~~GvfV~~~~-~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LS 1497 (1619)
+++|+.+.|+|++++ ++|+||.+.. +++||||.|+++|.. ...+++||.|.++ +.+|+ ++||.+|
T Consensus 67 ------~~~G~~~~g~V~~v~~~~GaFVdiG~~~~d~lvp~sel~~~~-----~~~~~~Gd~v~v~-l~iD~-~~Ri~ls 133 (285)
T 3go5_A 67 ------ATQDQFGWGRVTEVRKDLGVFVDTGLPDKEIVVSLDILPELK-----ELWPKKGDQLYIR-LEVDK-KDRIWGL 133 (285)
T ss_dssp ------SCSSSCEEEEEEEEETTTEEEEECSCTTCCEEEEGGGSCSSG-----GGSCCTTCEEEEE-EEECT-TSCEEEE
T ss_pred ------ccCCCEEEEEEEEEccCceEEEEECCCCcEEEEEHHHCCccc-----ccccCCCCEEEEE-EEECC-CCcEEEE
Confidence 378999999999999 8999999986 799999999999832 2357999999765 69998 7999999
Q ss_pred eecC-cCCCcccccccCCCCCeEEEEEEEEecCceEEE-EecCCeEEEEEccccccccccCcCCCCEEEEEEEEEeCCCC
Q psy14505 1498 IKQL-EGDPFNNYVNINDKGSLVNGIIKSIDTNKGAII-QLSNEVEGYLRISEEDNKHEKKLKIGENIDVLTVLIDHKTR 1575 (1619)
Q Consensus 1498 lK~~-~~~p~~~~~~~~~~G~~v~g~V~~i~~~~G~~V-~l~~gv~G~i~~~~~~~~~~~~~~~Gq~V~~~Vl~vd~~~k 1575 (1619)
+|+. ..+||......+++|+.|+|+|.++ +++|+|| .+++++.||+|.|+++ ..+++||.|+|+|+++|++++
T Consensus 134 ~k~~~~~~~~~~~~~~~~~G~~V~g~V~~i-~~~G~fV~~i~~g~~Glih~SEl~----~~l~~Gd~v~~~V~~id~~d~ 208 (285)
T 3go5_A 134 LAYQEDFQRLARPAYNNMQNQNWPAIVYRL-KLSGTFVYLPENNMLGFIHPSERY----AEPRLGQVLDARVIGFREVDR 208 (285)
T ss_dssp ECCHHHHHHHCCCCCSCCTTCEEEEEEEEE-ETTEEEEEETTTTEEEEECGGGCS----SCCCTTCEEEEEEEEEETTTT
T ss_pred ehhhhhcchhhhhhhhCCCCCEEEEEEEEE-eCCcEEEEEeCCCeEEEEEHHHcc----ccCCCCCEEEEEEEEEECCCC
Confidence 9976 4678988888999999999999999 5999999 9999999999999997 359999999999999999999
Q ss_pred EEEEeecch
Q psy14505 1576 YIQLSFKKK 1584 (1619)
Q Consensus 1576 ~i~lSlk~~ 1584 (1619)
+|+||||+.
T Consensus 209 kI~LSlk~~ 217 (285)
T 3go5_A 209 TLNLSLKPR 217 (285)
T ss_dssp EEEEECSCC
T ss_pred eEEEEeChh
Confidence 999999986
No 29
>3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus}
Probab=99.94 E-value=6.9e-26 Score=262.73 Aligned_cols=195 Identities=17% Similarity=0.287 Sum_probs=175.7
Q ss_pred CcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCccCC
Q psy14505 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSR 620 (1619)
Q Consensus 541 ~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~~~ 620 (1619)
++++++++|++||+||+++++|. ++++ |..++++++||.+..++.|+++++|++||+.|++|+++++++|.++|.++
T Consensus 79 ~~~~~v~~T~~G~iKr~~l~~~~-~~~~--G~~~i~lkegD~l~~~~~~~~~~~ill~T~~G~~~r~~~~eip~~gR~a~ 155 (276)
T 3no0_A 79 FGNRLLLATKKGYVKKIPLAEFE-YKAQ--GMPIIKLTEGDEVVSIASSVDETHILLFTKKGRVARFSVREVPPSTPGAR 155 (276)
T ss_dssp SCSEEEEEETTSEEEEEEGGGTT-TCST--TEECSCCCTTCCEEEEEECCSSCEEEEEETTSEEEEEEGGGSCBCCTTCC
T ss_pred CCCEEEEEeCCCEEEEEEHHHhh-hhcC--CeEEEecCCCCEEEEEEEeCCCCEEEEEECCCEEEEEEhhhCCCcCCCCC
Confidence 57899999999999999999998 6654 78899999999999999999999999999999999999999999999999
Q ss_pred CccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEecCC
Q psy14505 621 GKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGS 700 (1619)
Q Consensus 621 G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~~~~ 700 (1619)
|.++. ++.++++++++... ++++.++++|++||+||+++++|..++|+|+..+.+.++|.++.+..++++
T Consensus 156 Gv~~i---~L~~~d~vv~~~~~-------~~~~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~~~~~lv~~~~~~~~ 225 (276)
T 3no0_A 156 GVQGI---KLEKNDETSGLRIW-------NGEPYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSGTKDTLVDLIPIKEE 225 (276)
T ss_dssp CEECC---CCCTTCCEEEEEEE-------SSCSEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCCSSSCEEEEEEESSE
T ss_pred CEEEE---ccCCCCEEEEEEEe-------CCCCEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEcCCCcEEEEEEeCCC
Confidence 99864 56789999999877 345689999999999999999999998875544445778999999999888
Q ss_pred CeEEEEeCCceEEE--EecccccccCCCCCCccceecCCCCEEEEEEEecC
Q psy14505 701 YDIMLFSDSGKAVR--FNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNN 749 (1619)
Q Consensus 701 d~lll~T~~G~~~~--~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~ 749 (1619)
++++++|++|++++ |++.+||.++|.++||++|+|++ |+|+++..+++
T Consensus 226 ~~i~~~t~~G~~ir~~~~~~~i~~~~R~~~Gv~~i~l~~-d~v~~~~~~~~ 275 (276)
T 3no0_A 226 VELLITTKNGKAFYDKINQKDIPLSTKKSIPRTRWKLED-DEIIKVVIKKS 275 (276)
T ss_dssp EEEEEEETTSCEEEEEEEGGGSCBCCTTSCCC-CCCCTT-CCEEEEEEEEE
T ss_pred CEEEEEcCCCeEEEeeeCHHHCCCcCCCCCCEEeEEcCC-CEEEEEEEecC
Confidence 99999999999999 99999999999999999999999 99999887653
No 30
>1zvu_A Topoisomerase IV subunit A; beta-pinwheel, ATPase, supercoiling, decatenation, DNA bindi topology; 3.00A {Escherichia coli}
Probab=99.94 E-value=1.2e-26 Score=288.53 Aligned_cols=193 Identities=16% Similarity=0.276 Sum_probs=159.7
Q ss_pred CCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCC
Q psy14505 647 RDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRS 726 (1619)
Q Consensus 647 ~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~ 726 (1619)
+.+++++++|++|++||+||+..... |...++++++|.+..++.|+++|+++|||++|++|++++++||.. +
T Consensus 467 dli~~e~v~v~ls~~GyiKr~~g~~~------~~~~~~~k~~D~~~~~~~~~t~d~ll~ft~~Gr~y~~~~~~lP~~--~ 538 (716)
T 1zvu_A 467 DMLPSEPVTIVLSQMGWVRSAKGHDI------DAPGLNYKAGDSFKAAVKGKSNQPVVFVDSTGRSYAIDPITLPSA--R 538 (716)
T ss_dssp TTSCCCCCCEEEETTTEEEECCC---------------------CCEEECCCSSSCEEEEETTSEEEEECTTTSCCC--C
T ss_pred hccCCceEEEEEecCCeEeccCCCCc------CccccccCCCCeEEEEEEecCCCEEEEEecCCcEEEEEeeecccc--c
Confidence 46789999999999999999643221 235678999999999999999999999999999999999999996 5
Q ss_pred CCCccc---eecCCCCEEEEEEEecCCCCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEe-cCC
Q psy14505 727 ARGVIG---MRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLV-NRY 802 (1619)
Q Consensus 727 a~Gv~~---i~L~~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~-~~~ 802 (1619)
++|.++ +.|.+||+|++++++.+ +.+++++|++|++||+++++|.+.+ ++|+.+++|++ +|+|+++..+ +++
T Consensus 539 ~~G~~i~~ll~l~~~e~i~~~~~~~~-~~~l~~~T~~G~vk~~~l~~~~~~~--~~g~~ai~L~~-~d~lv~~~~~~~~~ 614 (716)
T 1zvu_A 539 GQGEPLTGKLTLPPGATVDHMLMESD-DQKLLMASDAGYGFVCTFNDLVARN--RAGKALITLPE-NAHVMPPVVIEDAS 614 (716)
T ss_dssp ---CBSTTTSCCCTTCCEEEEECCCT-TCEEEEEBTTSEEEEEEGGGGCCCS--TTCEECBCCCT-TCCBCCCEECCCTT
T ss_pred ccCeeHHhccCCCCCCeEEEEEEecC-CceEEEEeCCceEEEecHHHhcccC--ccceEEEeeCC-CCEEEEEEEecCCC
Confidence 788775 67789999999998876 6789999999999999999998765 46999999998 8999999888 678
Q ss_pred cEEEEEECCCeEEEEecCcccccCCCCCCeEEEEcC------CCceEEEEEEeecc
Q psy14505 803 HEIMLITTGGILIRTRVSEIRKMGRSTQGVILITVE------NKSKLCGVQRLCKI 852 (1619)
Q Consensus 803 ~~i~l~T~~g~~lrf~~~eI~~~gr~a~Gv~~i~L~------~~d~v~~~~~~~~~ 852 (1619)
++|+++|++|+++||+++++|+||| |+||++|+|+ ++|.|+++..+.++
T Consensus 615 ~~v~l~t~~g~~lrf~~~~v~~~gr-~~GV~~i~l~~~~~k~~~d~v~~~~~~~~~ 669 (716)
T 1zvu_A 615 DMLLAITQAGRMLMFPVSDLPQLSK-GKGNKIINIPSAEAARGEDGLAQLYVLPPQ 669 (716)
T ss_dssp CEEEEEETTSEEEEEESTTSCBCSS-BSCEESSCCCHHHHHTTSSCEEEEEEECSS
T ss_pred CEEEEEeCCCeEEEEEHHHCCccCc-ccCeEEEEecccccCCCCCEEEEEEEecCC
Confidence 8999999999999999999999999 9999999999 99999999887643
No 31
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.89 E-value=6.9e-24 Score=235.05 Aligned_cols=183 Identities=16% Similarity=0.130 Sum_probs=136.9
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
++|+++|+.|+||+++++.||++|||+||| |.||+. +|.+.|+++++.+.+.+.... ++ . .+ +++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~---~a~~~g~~~~~~~~~~e~~~~-~~--~--~~-~~~----- 71 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDE---VAKDGRYSKEVLERFDEKPMN-FA--F--IP-VPA----- 71 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHH---TTCC------------------------------------
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHH---HHHhcCCCHHHHHHHhhhchh-HH--H--HH-hcc-----
Confidence 589999999999999999999999999999 999885 445889988766666555433 11 0 11 111
Q ss_pred cccccccccccccccccHHHHHHHHHHHHhhh--cCCCeEEeccccCeeeecCC--CeEEEEEcCHHHHHHhchHHHHhc
Q psy14505 940 LIRNEKVSNNASKIAKFKNIRKELFKIQVKFR--KFPGLVADGRDMGTTVFPDA--FLKIFLTADIKQRTKRRYKQLMQK 1015 (1619)
Q Consensus 940 ~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a--~~~~~V~~GRd~~~~v~p~a--~~kifl~A~~e~Ra~Rr~~~l~~~ 1015 (1619)
.++.++..+.+|+.+.++|+++| ++++|||+|| ||++|||++ .++|||+||+++|++|+.++
T Consensus 72 ---------~~~~~~~~~~~~~~~~~~i~~la~~~~~~~Vi~Gr-~g~~vl~~~~~~~~V~L~A~~e~r~~R~~~~---- 137 (201)
T 3fdi_A 72 ---------GGTTISLEQDIAIRQFNFIRKKANEEKESFVIVGR-CAEEILSDNPNMISAFILGDKDTKTKRVMER---- 137 (201)
T ss_dssp -----------------CHHHHHHHHHHHHHHHTSCCCEEEEST-THHHHTTTCTTEEEEEEEECHHHHHHHHHHH----
T ss_pred ---------ccccccccHHHHHHHHHHHHHHHhhcCCCEEEEEC-CcchhcCCCCCeEEEEEECCHHHHHHHHHHH----
Confidence 03556788999999999999999 8899999999 788999995 59999999999999996654
Q ss_pred CCCCCHHHHHHHHHhhhhhcccC-----CCCCCCCCCCceEEccCcccchhhhhhhhhhhhh
Q psy14505 1016 GFSVSMSDLLINLIKRDIRDKTR-----NLSPLKCPEQAHLLNTSKMNINQVVNQILDCFAT 1072 (1619)
Q Consensus 1016 ~~~~~~~~~~~~i~~rD~~d~~r-----~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ 1072 (1619)
.+.+.+++++.|+++|+.|..| ...|++++.++++|||+.++++++++.|+++++.
T Consensus 138 -~~~~~~~~~~~i~~~d~~R~~~y~~~~~~~~~~~~~~dl~Idt~~l~~eevv~~I~~~i~~ 198 (201)
T 3fdi_A 138 -EGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTYDICIKIGKVDVDTATDMIIKYIDS 198 (201)
T ss_dssp -HTCCHHHHHHHHHHHHHHHHHHHHHHCSSCTTBGGGCSEEEEESSSCHHHHHHHHHHHHHT
T ss_pred -hCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 3468999999999999999987 5789999999999999999999999999987754
No 32
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.88 E-value=6.7e-22 Score=225.10 Aligned_cols=215 Identities=38% Similarity=0.630 Sum_probs=190.1
Q ss_pred cccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHccccee-c----CceEEe
Q psy14505 858 YIPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNF-L----GKEVYL 932 (1619)
Q Consensus 858 ~~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~-~----~~~~~~ 932 (1619)
...+|.+.|+.|+||+|+++.+++++|++++|+|.++|.+++.+.+.|.+.++++.+.+.+......| . +..++.
T Consensus 15 ~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~~~~~~~i~~ 94 (236)
T 1q3t_A 15 KTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVFV 94 (236)
T ss_dssp CCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHSCCEEEEETTTEEEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEcceeeeeccCCCcccHHHHHHHHHhccccccccCCccceEeE
Confidence 34578999999999999999999999999999999999999888899999888888888877665555 1 236778
Q ss_pred CCccccccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeeecCCCeEEEEEcCHHHHHHhchHHH
Q psy14505 933 NGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQL 1012 (1619)
Q Consensus 933 ~~~~v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~p~a~~kifl~A~~e~Ra~Rr~~~l 1012 (1619)
+|+.+...++++.+...++.++.+|.||+.+.+.++.++..++||++||++++.++|+++++|||+||+++|++|++.++
T Consensus 95 ~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~~~~l~~~d~vi~L~a~~e~~~~R~~~~~ 174 (236)
T 1q3t_A 95 GDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKEN 174 (236)
T ss_dssp TTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCSSSSGGGCSEEEEEECCHHHHHHHHHHHH
T ss_pred CCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcchhhhccCCCEEEEEECCHHHHHHHHHHHH
Confidence 99988888888888777788899999999999999999888899999999988899999999999999999999988876
Q ss_pred HhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhh
Q psy14505 1013 MQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFAT 1072 (1619)
Q Consensus 1013 ~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ 1072 (1619)
..++.+.+.+++.+.+.+||..+..|...|+..+.|+++|||+.++++++++.|.+.+..
T Consensus 175 ~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I~~~l~~ 234 (236)
T 1q3t_A 175 IAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAEAEK 234 (236)
T ss_dssp HHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 667766789999999999999999998889888877899999999999999999887653
No 33
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.86 E-value=2.9e-21 Score=216.98 Aligned_cols=208 Identities=35% Similarity=0.569 Sum_probs=179.1
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceec-----CceEEeCC
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFL-----GKEVYLNG 934 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 934 (1619)
++|.+.|+.|+||+++++.+++++|++|+|+|.+||.+++.+.+.|. .. .+.+.+.+..+.|. +..++.+|
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~~~~~~~~~~~-~~---~i~~~~~~~~~~f~~~~~~g~~i~~~g 79 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRALTYKYLKLNK-TE---DFAKLVDQTTLDLTYKADKGQCVILDN 79 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTS-CS---CHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHHHHHHHHHhhh-hH---HHHHHHHhccccccccccccceEEeCC
Confidence 46888999999999999999999999999999999999999999988 22 34444455555553 34677899
Q ss_pred ccccccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeeecCCCeEEEEEcCHHHHHHhchHHHHh
Q psy14505 935 VNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQ 1014 (1619)
Q Consensus 935 ~~v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~p~a~~kifl~A~~e~Ra~Rr~~~l~~ 1014 (1619)
+++...++.+.+...++.++.+|.|++.+.+.|+.++..++||++||++++.++|++++.|||+||+++|.+|+.+++..
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~~~~vi~g~~~~~~~~~~~~~vi~l~a~~e~~~~R~~~~~~~ 159 (219)
T 2h92_A 80 EDVTDFLRNNDVTQHVSYVASKEPVRSFAVKKQKELAAEKGIVMDGRDIGTVVLPDADLKVYMIASVEERAERRYKDNQL 159 (219)
T ss_dssp EECGGGSSSSHHHHHHHHHHTSHHHHHHHHHHHHHHHTTCCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHHHHH
T ss_pred ccchhhcCcHHHHHHHHHhccCHHHHHHHHHHHHHhccCCcEEEEcCCccceecCCCCEEEEEECCHHHHHHHHHHHHHh
Confidence 99888898888877777778999999999999988988889999999988899999999999999999999998877656
Q ss_pred cCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhh
Q psy14505 1015 KGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFA 1071 (1619)
Q Consensus 1015 ~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~ 1071 (1619)
++...+.+++.+.+.+||..|.+|...|+....|+++|||+.++++++++.|.+.+.
T Consensus 160 r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I~~~l~ 216 (219)
T 2h92_A 160 RGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMVS 216 (219)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHHHHHHH
T ss_pred cCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHHHHHHh
Confidence 666558899999999999999999888988777889999999999999999987664
No 34
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.85 E-value=6.2e-22 Score=222.05 Aligned_cols=194 Identities=16% Similarity=0.118 Sum_probs=135.6
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
++|++.|+.|+||+++++.||+++|++|||.+.+.+ +|.+.|++++..+.+.+...+..++. ++++. ++.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d~~~~~~----~a~~~g~~~~~~~~~~E~~~~~~~~~-----~~~~~-~~~ 84 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKL----ASEKSAVGEQFFRLADEKAGNNLLYR-----LGGGR-KID 84 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEECHHHHHH----HHHCC-----------------------------------
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEcHHHHHH----HHHHcCCCHHHHHHHHhhccccHHHH-----Hhccc-ccc
Confidence 589999999999999999999999999999555444 67799999887777766554422210 11111 122
Q ss_pred cccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeee---cCC--CeEEEEEcCHHHHHHhchHHHHh
Q psy14505 940 LIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVF---PDA--FLKIFLTADIKQRTKRRYKQLMQ 1014 (1619)
Q Consensus 940 ~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~---p~a--~~kifl~A~~e~Ra~Rr~~~l~~ 1014 (1619)
.++.+.++ +..+..+.++..|.++|+++|++++|||+|| ||.+|+ |++ .++|||+||+++|++|+.++
T Consensus 85 ~~~~~~~~---~~~~~~~~~f~~~~~~i~~la~~~~~Vi~Gr-ggg~vl~~~~~~~~~~~VfL~A~~e~r~~Ri~~~--- 157 (223)
T 3hdt_A 85 LHSKPSPN---DKLTSPENLFKFQSEVMRELAESEPCIFVGR-AAGYVLDQDEDIERLIRIFVYTDKVKKVQRVMEV--- 157 (223)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHHSCEEEEST-THHHHHHHCTTCCEEEEEEEECCHHHHHHHHHHH---
T ss_pred cccccccc---cccccHHHHHHHHHHHHHHHHhCCCEEEEeC-CcchhcccccCCCCeEEEEEECCHHHHHHHHHHh---
Confidence 22222221 3356678899999999999999999999999 777888 887 49999999999999996543
Q ss_pred cCCCCCHHHHHHHHHhhhhhcccC-----CCCCCCCCCCceEEccCcccchhhhhhhhhhhhh
Q psy14505 1015 KGFSVSMSDLLINLIKRDIRDKTR-----NLSPLKCPEQAHLLNTSKMNINQVVNQILDCFAT 1072 (1619)
Q Consensus 1015 ~~~~~~~~~~~~~i~~rD~~d~~r-----~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ 1072 (1619)
.+.+.+++++.|+++|+.|..| ...|.+++.++++|||+.+++|++++.|+++++.
T Consensus 158 --~~~~~~~a~~~I~~~d~~R~~~Y~~ytg~~~~~~~~~dl~IdT~~l~~eevv~~I~~~i~~ 218 (223)
T 3hdt_A 158 --DCIDEERAKRRIKKIEKERKEYYKYFTGSEWHSMKNYDLPINTTKLTLEETAELIKAYIRL 218 (223)
T ss_dssp --HTCCHHHHHHHHHHHHHHHHHHHHHHHSSCTTCGGGCSEEEECTTCCHHHHHHHHHHHHHH
T ss_pred --cCCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 4568899999999999999877 3679999999999999999999999999987763
No 35
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.82 E-value=8.1e-20 Score=206.21 Aligned_cols=214 Identities=44% Similarity=0.730 Sum_probs=177.2
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceec----CceEEeCCc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFL----GKEVYLNGV 935 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 935 (1619)
.+|.+.|++|+||+|+++.+++.+|++++|+|.+||..++.+.+.|.+..+...+.++.......+. ..+++++|.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 85 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILEGE 85 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEETTE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEECCe
Confidence 4788999999999999999999999999999999999988888889887766677777776665543 246789999
Q ss_pred cccccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeeecCCCeEEEEEcCHHHHHHhchHHHHhc
Q psy14505 936 NVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQK 1015 (1619)
Q Consensus 936 ~v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~p~a~~kifl~A~~e~Ra~Rr~~~l~~~ 1015 (1619)
.+++.++..++...++.++.+|.+|+.+...++.++..+++|++|+++++.++|+++++|||+|++++|++||..++..+
T Consensus 86 ~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~~~~~~~~~~~d~~i~l~~~~e~~~~R~~~~l~~r 165 (227)
T 1cke_A 86 DVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVK 165 (227)
T ss_dssp ECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred eCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECCCccceEecCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 99999999999888888999999999999988888888899999999999999999999999999999999998887677
Q ss_pred CCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhh
Q psy14505 1016 GFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATL 1073 (1619)
Q Consensus 1016 ~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~l 1073 (1619)
|...+.+++.+.+.+|+..+..|...|+..+.++++||++..+++++++.|.+.+...
T Consensus 166 g~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~~~l~~~ 223 (227)
T 1cke_A 166 GFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQK 223 (227)
T ss_dssp TCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHHHHHHHh
Confidence 7666889999999999998888888899888888999999899999999998876543
No 36
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.82 E-value=1.2e-19 Score=201.65 Aligned_cols=200 Identities=35% Similarity=0.561 Sum_probs=172.1
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecC----ceEEeCCcc
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLG----KEVYLNGVN 936 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~ 936 (1619)
+|++.|++|+||+|+++.|++++|++|+|+|.+||.+++.+.+.|++.++.+.+.+.+....+.+.. ..++.+|+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 83 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRAAAFLALRAGVDPGDEEGLLALLEGLGVRLLAQAEGNRVLADGED 83 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHHTTCEEECCTTCCEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHhhhhhhHhcCCCCCCHHHHHHHHHhCceeeeecCCCceEEECCee
Confidence 6899999999999999999999999999999999999988888999988888888888877666531 367789999
Q ss_pred ccccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeeecCCCeEEEEEcCHHHHHHhchHHHHhcC
Q psy14505 937 VTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQKG 1016 (1619)
Q Consensus 937 v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~p~a~~kifl~A~~e~Ra~Rr~~~l~~~~ 1016 (1619)
+...++.+.+...++.++.+|.||+.+.+.|++++ ++||++|+++.+.++|+++++|||+||++.|.+|+..+
T Consensus 84 v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~~~~~~~~d~~i~l~a~~e~~~~R~~~r----- 156 (208)
T 3ake_A 84 LTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMGTAVFPEAAHKFYLTASPEVRAWRRARE----- 156 (208)
T ss_dssp CGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCCCCCCTTCSEEEEEECCHHHHHHHHHHT-----
T ss_pred CchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEccceeEEEecCCcEEEEEECCHHHHHHHHHhh-----
Confidence 99888888777777777889999999999999988 79999999988888899999999999999999996544
Q ss_pred CCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhh
Q psy14505 1017 FSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFA 1071 (1619)
Q Consensus 1017 ~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~ 1071 (1619)
...+.+++.+.+.+||..+..|. .+..|+++|||+.++++++++.|.+.++
T Consensus 157 ~~~~~~~~~~~~~~R~~~~~~~~----~~~ad~~~Id~~~~~~ee~~~~I~~~~~ 207 (208)
T 3ake_A 157 RPQAYEEVLRDLLRRDERDKAQS----APAPDALVLDTGGMTLDEVVAWVLAHIR 207 (208)
T ss_dssp SSSCHHHHHHHHHHHHHTC--CC----CCCTTCEEEETTTSCHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHHHhhcc----cCCCCEEEEECCCCCHHHHHHHHHHHHh
Confidence 23678999999999999887765 3445679999999999999999987653
No 37
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.67 E-value=3.9e-19 Score=190.86 Aligned_cols=124 Identities=15% Similarity=0.325 Sum_probs=106.7
Q ss_pred cccceeEEEEEEEEcCCeEEEEE--cCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeecccC
Q psy14505 1339 YPRGTRLLGKVTNLTDYGAFVEI--EKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKD 1416 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~~G~fV~l--~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~~ 1416 (1619)
+++|+++.|+|+++++||+||+| +++++||||+|+++| ....+|.+.|++||.|+|+|+++|+++++|.||+|+...
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~-~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~ 91 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSR-RRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSP 91 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC-------------CTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCC-cccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 47999999999999999999999 679999999999999 568899999999999999999999999999999999999
Q ss_pred CCCcccccccccceEEEEEEEEEec-ceEEEeeCCCeEEEEeCCCCCCCC
Q psy14505 1417 NPWENFSIIHKKGEKIKGIIKSITD-FGIFIGLDGNIDGLIHLSDLSWTD 1465 (1619)
Q Consensus 1417 ~~~~~~~~~~~vG~~v~G~V~~i~~-~GvfV~~~~~v~Glv~~sels~~~ 1465 (1619)
+||..+...|+.|+.+.|.|+++++ +| |++.+++.||+|.++++|.+
T Consensus 92 ~p~~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~giegl~h~s~~~~~~ 139 (182)
T 1kl9_A 92 EEAIKCEDKFTKSKTVYSILRHVAEVLE--YTKDEQLESLFQRTAWVFDD 139 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSHHHHHHHHHHTHHHHHH
T ss_pred ChHHHHHHhccCCCEEEEEEEEchhhcC--CcccCChhheEEeeecchhh
Confidence 9999999999999999999999998 99 89999999999999887743
No 38
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.63 E-value=1.2e-15 Score=152.86 Aligned_cols=104 Identities=28% Similarity=0.617 Sum_probs=88.0
Q ss_pred EeeecccCCCCcccccccccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEee
Q psy14505 1409 LGMKQCKDNPWENFSIIHKKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSID 1488 (1619)
Q Consensus 1409 LSlK~~~~~~~~~~~~~~~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd 1488 (1619)
-|+|+...+||..+...+++|+++.|+|++++++|+||++.+++.||||.++++|+....++.+.|++||.|+|+|+++|
T Consensus 11 ~~~k~~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd 90 (115)
T 2khi_A 11 SSGLVPRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDID 90 (115)
T ss_dssp ----------CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEE
T ss_pred cchhhcccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEE
Confidence 47899999999999888899999999999999999999999999999999999975567788899999999999999999
Q ss_pred cCCCeEEEeeecCcCCCccccccc
Q psy14505 1489 VEKERISLGIKQLEGDPFNNYVNI 1512 (1619)
Q Consensus 1489 ~e~~ri~LSlK~~~~~p~~~~~~~ 1512 (1619)
+++++|.||+|+..++||..+.+.
T Consensus 91 ~~~~rI~lslk~~~~~p~~~~~~~ 114 (115)
T 2khi_A 91 EERRRISLGLKQCKANPWQQFAET 114 (115)
T ss_dssp TTTTEEEECCCCCCSSCCCCCCCC
T ss_pred CCCCEEEEEEEecCcCHHHHHHhh
Confidence 999999999999999999887654
No 39
>1kl9_A Eukaryotic translation initiation factor 2 subuni; OB fold, helical domain; 1.90A {Homo sapiens} SCOP: a.60.14.1 b.40.4.5
Probab=99.61 E-value=2.3e-18 Score=184.87 Aligned_cols=128 Identities=16% Similarity=0.371 Sum_probs=108.8
Q ss_pred cCCCcEEEEEEEEEecCeEEEEe---CCEEEEeeccccCccccCCCccccccCCEEEEEEEEeecCCCeEEEeeeccccC
Q psy14505 1254 LKEGCTVKGVVKNITDYGAFIDL---GGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGID 1330 (1619)
Q Consensus 1254 l~~G~iv~g~V~~v~~~G~~V~l---~gi~g~l~~sels~~~~~~~~~~~~vG~~v~vrVl~vd~~~~~i~LSlK~~~~~ 1330 (1619)
.++|+++.|+|+++.++|+||++ ++++||||+++|+|.+..++.+.|++||+|+|+|+++|++++++.||+|+...+
T Consensus 13 p~~G~iv~G~V~~I~~fGaFV~L~e~~g~eGLvhiSels~~~v~~~~~~~~vGd~V~VkVl~vD~~~~rI~LSlk~~~~~ 92 (182)
T 1kl9_A 13 PEVEDVVMVNVRSIAEMGAYVSLLEYNNIEGMILLSELSRRRIRSINKLIRIGRNECVVVIRVDKEKGYIDLSKRRVSPE 92 (182)
T ss_dssp CCTTCEEEEEEEEECSSEEEEEETTTTTEEEEEEGGGC------------CTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCCEEEEEEEEEeccEEEEEEccCCCcEEEEEHHHCCCcccCCHHHhcCCCCEEEEEEEEEECCCCEEEEEEeecCcC
Confidence 37899999999999999999999 589999999999999999999999999999999999999999999999999999
Q ss_pred CccccccccccceeEEEEEEEEcC-CeEEEEEcCCEEEEEeccccCccccCCCc
Q psy14505 1331 PWIGLSFRYPRGTRLLGKVTNLTD-YGAFVEIEKGIEGLVHISEMDWINKNVTP 1383 (1619)
Q Consensus 1331 ~~~~~~~~l~~G~iv~g~V~~v~~-~G~fV~l~~gv~GlV~~sels~~~~~~~~ 1383 (1619)
||....++++.|+.+.|+|+++.+ +| +++.++++|++|.++++|.+...+|
T Consensus 93 p~~~~~~~~~~g~~v~g~v~~i~~~~g--v~l~~giegl~h~s~~~~~~~~~~~ 144 (182)
T 1kl9_A 93 EAIKCEDKFTKSKTVYSILRHVAEVLE--YTKDEQLESLFQRTAWVFDDKYKRP 144 (182)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSHHHHHHHHHHTHHHHHHHHTCT
T ss_pred hHHHHHHhccCCCEEEEEEEEchhhcC--CcccCChhheEEeeecchhhhcCCc
Confidence 999988899999999999999998 99 7888899999999999886665663
No 40
>2khi_A 30S ribosomal protein S1; acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.59 E-value=4e-15 Score=149.00 Aligned_cols=104 Identities=60% Similarity=1.069 Sum_probs=88.3
Q ss_pred EeeeccccCCccccccccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEee
Q psy14505 1322 LGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEIN 1401 (1619)
Q Consensus 1322 LSlK~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id 1401 (1619)
-|+|+...+||.....++++|+++.|+|+++.++|+||+++++++||||.++++|.....++.+.|++||.|+|+|+.+|
T Consensus 11 ~~~k~~~~~p~~~~~~~~~~G~~~~G~V~~v~~~G~FV~l~~~~~Glvhisel~~~~~~~~~~~~~~vGd~V~vkV~~vd 90 (115)
T 2khi_A 11 SSGLVPRGSHWVAIAKRYPEGTKLTGRVTNLTDYGCFVEIEEGVEGLVHVSEMDWTNKNIHPSKVVNVGDVVEVMVLDID 90 (115)
T ss_dssp ----------CCCSSCSSCSSCEEEEEEEEEETTEEEEECSTTCEEEEETTSSSCSSTTCSSTTTCCTTCEEEEEEEEEE
T ss_pred cchhhcccCCHHHHhhcCCCCCEEEEEEEEEECCEEEEEECCCCEEEEEHHHCCccccccCcccEECCCCEEEEEEEEEE
Confidence 57899999999998889999999999999999999999999999999999999985466788999999999999999999
Q ss_pred cccceEEEeeecccCCCCcccccc
Q psy14505 1402 EERRRISLGMKQCKDNPWENFSII 1425 (1619)
Q Consensus 1402 ~e~~ri~LSlK~~~~~~~~~~~~~ 1425 (1619)
+++++|.||+|+...+||..+.+.
T Consensus 91 ~~~~rI~lslk~~~~~p~~~~~~~ 114 (115)
T 2khi_A 91 EERRRISLGLKQCKANPWQQFAET 114 (115)
T ss_dssp TTTTEEEECCCCCCSSCCCCCCCC
T ss_pred CCCCEEEEEEEecCcCHHHHHHhh
Confidence 999999999999999999988654
No 41
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.49 E-value=1.3e-15 Score=162.99 Aligned_cols=107 Identities=21% Similarity=0.297 Sum_probs=92.2
Q ss_pred ccc-cceEEEEEEEEEecceEEEeeC--CCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecC
Q psy14505 1425 IHK-KGEKIKGIIKSITDFGIFIGLD--GNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQL 1501 (1619)
Q Consensus 1425 ~~~-vG~~v~G~V~~i~~~GvfV~~~--~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~ 1501 (1619)
.++ +|+++.|+|+++++||+||++. +++.||||.|+++| .+..++.+.|++||.|+|+|+++|+++++|.||+|+.
T Consensus 11 ~~p~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~-~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~ 89 (175)
T 2a19_A 11 KYPEIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSR-RRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRV 89 (175)
T ss_dssp SSCCTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC---------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTC
T ss_pred cCCCCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCC-cccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEec
Confidence 344 8999999999999999999994 89999999999997 6678999999999999999999999999999999999
Q ss_pred cCCCcccccccCCCCCeEEEEEEEEecCceE
Q psy14505 1502 EGDPFNNYVNINDKGSLVNGIIKSIDTNKGA 1532 (1619)
Q Consensus 1502 ~~~p~~~~~~~~~~G~~v~g~V~~i~~~~G~ 1532 (1619)
..+||....+.+++|+.+.|+|.++..++|+
T Consensus 90 ~~~~~~~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 90 SSEDIIKCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CcChHHHHHHhccCCCcceEEEEEchhhcCC
Confidence 9999999999999999999999999436776
No 42
>2a19_A EIF-2- alpha, eukaryotic translation initiation factor 2 alpha; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Saccharomyces cerevisiae} PDB: 2a1a_A* 1q46_A
Probab=99.48 E-value=2.3e-15 Score=161.06 Aligned_cols=104 Identities=17% Similarity=0.351 Sum_probs=92.1
Q ss_pred ccceeEEEEEEEEcCCeEEEEE--cCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeecccCC
Q psy14505 1340 PRGTRLLGKVTNLTDYGAFVEI--EKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDN 1417 (1619)
Q Consensus 1340 ~~G~iv~g~V~~v~~~G~fV~l--~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~~~ 1417 (1619)
++|+++.|+|+++.+||+||+| +++++||||+|+++| ....+|.+.|++||.|+|+|+++|+++++|.||+|+...+
T Consensus 14 ~~G~iv~G~V~~i~~fGaFV~L~e~~gveGLvhiSels~-~~v~~~~~~~~vGd~V~vkVl~vd~~~~~I~LSlk~~~~~ 92 (175)
T 2a19_A 14 EIDDIVMVNVQQIAEMGAYVKLLEYDNIEGMILLSELSR-RRIRSIQKLIRVGKNDVAVVLRVDKEKGYIDLSKRRVSSE 92 (175)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTTTTCEEEEECC---------CCCCCCCTTSEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCEEEEEEEEEecceEEEEEcCCCCcEEEEEHHHcCC-cccCCHHHcCCCCCEEEEEEEEEECCCCeEEEEEEecCcC
Confidence 3899999999999999999999 479999999999999 5688999999999999999999999999999999999999
Q ss_pred CCcccccccccceEEEEEEEEEe-cceE
Q psy14505 1418 PWENFSIIHKKGEKIKGIIKSIT-DFGI 1444 (1619)
Q Consensus 1418 ~~~~~~~~~~vG~~v~G~V~~i~-~~Gv 1444 (1619)
||..+.+.+++|+.+.|+|++++ ++|+
T Consensus 93 ~~~~~~~~~~~g~~v~g~V~~i~~~~G~ 120 (175)
T 2a19_A 93 DIIKCEEKYQKSKTVHSILRYCAEKFQI 120 (175)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHhccCCCcceEEEEEchhhcCC
Confidence 99999999999999999999998 7887
No 43
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.46 E-value=6.3e-14 Score=139.06 Aligned_cols=95 Identities=24% Similarity=0.409 Sum_probs=79.8
Q ss_pred EEeeecccCCCCcccccccccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEe
Q psy14505 1408 SLGMKQCKDNPWENFSIIHKKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSI 1487 (1619)
Q Consensus 1408 ~LSlK~~~~~~~~~~~~~~~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~v 1487 (1619)
+-|+|++..+||..+...+++|+++.|+|++++++|+||++.+++.||||.++++| .+..++.+.|++||.|+|+|+++
T Consensus 11 ~~~iKq~~~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~-~~~~~~~~~~~vGd~V~v~V~~v 89 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASR-DRVEDATLVLSVGDEVEAKFTGV 89 (109)
T ss_dssp ----------CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCS-SSSSSGGGSCCTTCEEEEEEEEE
T ss_pred ccchhhcccCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCc-ccccChhhccCCCCEEEEEEEEE
Confidence 45889999999999998899999999999999999999999999999999999996 56778899999999999999999
Q ss_pred ecCCCeEEEeeecCcC
Q psy14505 1488 DVEKERISLGIKQLEG 1503 (1619)
Q Consensus 1488 d~e~~ri~LSlK~~~~ 1503 (1619)
|++++++.||+|...+
T Consensus 90 d~~~~ki~LS~k~~~~ 105 (109)
T 2khj_A 90 DRKNRAISLSVRAKDE 105 (109)
T ss_dssp ETTTTEEEEETTSSSS
T ss_pred ECCCCEEEEEEeecCh
Confidence 9999999999998643
No 44
>2khj_A 30S ribosomal protein S1; OB fold, acetylation, phosphoprotein, ribonucleoprotein, RNA-binding; NMR {Escherichia coli}
Probab=99.41 E-value=1.7e-13 Score=136.00 Aligned_cols=95 Identities=25% Similarity=0.384 Sum_probs=79.7
Q ss_pred EEeeeccccCCccccccccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEe
Q psy14505 1321 SLGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEI 1400 (1619)
Q Consensus 1321 ~LSlK~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~i 1400 (1619)
.-|+|++.++||..+..++++|+++.|+|+++.++|+||+++++++||||.++++| ....++.+.|++||.|+|+|+.+
T Consensus 11 ~~~iKq~~~~p~~~~~~~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gll~~sel~~-~~~~~~~~~~~vGd~V~v~V~~v 89 (109)
T 2khj_A 11 SSGLVPRGSHMFNNWVALNKKGAIVTGKVTAVDAKGATVELADGVEGYLRASEASR-DRVEDATLVLSVGDEVEAKFTGV 89 (109)
T ss_dssp ----------CHHHHTTTCCSSSEEEEEEEEECSSCEEEECSTTCBCCBCTTCCCS-SSSSSGGGSCCTTCEEEEEEEEE
T ss_pred ccchhhcccCHHHHHhhcCCCCCEEEEEEEEEECCeEEEEECCCCEEEEEHHHcCc-ccccChhhccCCCCEEEEEEEEE
Confidence 45789999999999999999999999999999999999999989999999999998 55678899999999999999999
Q ss_pred ecccceEEEeeecccC
Q psy14505 1401 NEERRRISLGMKQCKD 1416 (1619)
Q Consensus 1401 d~e~~ri~LSlK~~~~ 1416 (1619)
|++++++.||+|+...
T Consensus 90 d~~~~ki~LS~k~~~~ 105 (109)
T 2khj_A 90 DRKNRAISLSVRAKDE 105 (109)
T ss_dssp ETTTTEEEEETTSSSS
T ss_pred ECCCCEEEEEEeecCh
Confidence 9999999999998643
No 45
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.40 E-value=1.1e-14 Score=168.24 Aligned_cols=108 Identities=15% Similarity=0.314 Sum_probs=102.3
Q ss_pred cccceeEEEEEEEEcCCeEEEEEc--CCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeecccC
Q psy14505 1339 YPRGTRLLGKVTNLTDYGAFVEIE--KGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKD 1416 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~~G~fV~l~--~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~~ 1416 (1619)
+++|+++.|+|+++.++|+||+|. ++++||||+|+++| ....++.+.|++||.|.|+|+++|++++++.||+|+...
T Consensus 11 ~~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~-~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~ 89 (308)
T 1q8k_A 11 PEVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSR-RRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSP 89 (308)
T ss_dssp CSSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSC-SSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCH
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCc-ccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEeccc
Confidence 469999999999999999999997 69999999999999 667899999999999999999999999999999999999
Q ss_pred CCCcccccccccceEEEEEEEEEec-ceEEEe
Q psy14505 1417 NPWENFSIIHKKGEKIKGIIKSITD-FGIFIG 1447 (1619)
Q Consensus 1417 ~~~~~~~~~~~vG~~v~G~V~~i~~-~GvfV~ 1447 (1619)
+||..+...+++|+++.|+|+++.+ +|+|++
T Consensus 90 ~p~~~~~~~~~~G~~v~G~V~~v~~~~G~fi~ 121 (308)
T 1q8k_A 90 EEAIKCEDKFTKSKTVYSILRHVAEVLEYTKD 121 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSS
T ss_pred ChHHHHHHHccCCCeeEEEEEEcccccCCccC
Confidence 9999999999999999999999999 699875
No 46
>1q8k_A Eukaryotic translation initiation factor 2 subunit 1; NMR {Homo sapiens} SCOP: a.60.14.1 b.40.4.5 d.58.51.1
Probab=99.37 E-value=1.7e-14 Score=166.73 Aligned_cols=107 Identities=21% Similarity=0.305 Sum_probs=100.1
Q ss_pred ccceEEEEEEEEEecceEEEeeC--CCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecCcCC
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLD--GNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEGD 1504 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~--~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~~~~ 1504 (1619)
++|+++.|+|++|++||+||++. +++.||||.|+++| .+..++.+.|++||.|.|+|+++|+++++|.||+|+...+
T Consensus 12 ~vG~iv~G~V~~I~~fGaFV~L~ey~gveGLvhiSels~-~~i~~~~~~~kvGd~V~VkVl~vD~~~~rI~LSlK~~~~~ 90 (308)
T 1q8k_A 12 EVEDVVMVNVRSIQEMGAYVSLLEYNNIEGMIHLSELSR-RRIRSINKLIRIGRNECVKVIRVDKEKGYIDLSKRRVSPE 90 (308)
T ss_dssp SSCCEEEEEEEEEETTEEEEESCTTTSCCEEECGGGTSC-SSCSCCTTTCSSSCEEEEEEEEEETTTTEEEEECSSCCHH
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCCCeEEEEEhHHcCc-ccccCHHHhcCCCCEEEEEEEEEeCCCCEEEEEEEecccC
Confidence 48999999999999999999998 79999999999997 6678999999999999999999999999999999999999
Q ss_pred CcccccccCCCCCeEEEEEEEEecC-ceEEEE
Q psy14505 1505 PFNNYVNINDKGSLVNGIIKSIDTN-KGAIIQ 1535 (1619)
Q Consensus 1505 p~~~~~~~~~~G~~v~g~V~~i~~~-~G~~V~ 1535 (1619)
||....+.+++|+.+.|+|.++. + ||+|+.
T Consensus 91 p~~~~~~~~~~G~~v~G~V~~v~-~~~G~fi~ 121 (308)
T 1q8k_A 91 EAIKCEDKFTKSKTVYSILRHVA-EVLEYTKD 121 (308)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-HHTTCCSS
T ss_pred hHHHHHHHccCCCeeEEEEEEcc-cccCCccC
Confidence 99998899999999999999995 6 699753
No 47
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.35 E-value=1e-12 Score=132.04 Aligned_cols=95 Identities=18% Similarity=0.276 Sum_probs=85.0
Q ss_pred cCCCCcccccccccceEEEEEEEEEecceEEEeeCC-CeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCC--
Q psy14505 1415 KDNPWENFSIIHKKGEKIKGIIKSITDFGIFIGLDG-NIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEK-- 1491 (1619)
Q Consensus 1415 ~~~~~~~~~~~~~vG~~v~G~V~~i~~~GvfV~~~~-~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~-- 1491 (1619)
..++|..+...+++|+++.|+|++|++||+||++.+ ++.||||.++++| .+..++.+.|++||.|+|+|+++|+++
T Consensus 9 ~~~~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~-~~~~~~~~~~~~Gd~V~VkV~~vd~~~~~ 87 (119)
T 2cqo_A 9 NSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSS-CRVDKPSEIVDVGDKVWVKLIGREMKNDR 87 (119)
T ss_dssp CCCCCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCS-SCCSCHHHHCCTTCEEEEEEEEEEECSSC
T ss_pred cccchhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCc-ccccChhhcCCCCCEEEEEEEEEeccccC
Confidence 457888888888999999999999999999999965 4799999999996 566788889999999999999999875
Q ss_pred CeEEEeeecCcCCCccccc
Q psy14505 1492 ERISLGIKQLEGDPFNNYV 1510 (1619)
Q Consensus 1492 ~ri~LSlK~~~~~p~~~~~ 1510 (1619)
++|.||+|+...+||..+.
T Consensus 88 ~~i~LSlk~~~~~~~~~~~ 106 (119)
T 2cqo_A 88 IKVSLSMKVVNQGTGKDLD 106 (119)
T ss_dssp EEEEEESTTBCSSSCCBSC
T ss_pred ceEEEEEeecccCCccccC
Confidence 6999999999999998654
No 48
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.32 E-value=2.8e-12 Score=131.01 Aligned_cols=83 Identities=28% Similarity=0.542 Sum_probs=77.1
Q ss_pred cccccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecCcC
Q psy14505 1424 IIHKKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEG 1503 (1619)
Q Consensus 1424 ~~~~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~~~ 1503 (1619)
..+++|+++.|+|++|+++|+||++.+++.||||.++++| .+..++.+.|++||.|+|+|+++|+++++|.||+|+...
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~-~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~ 81 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTH-GFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQA 81 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSS-SCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHHH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCc-ccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 3468999999999999999999999999999999999996 667888999999999999999999999999999999888
Q ss_pred CCcc
Q psy14505 1504 DPFN 1507 (1619)
Q Consensus 1504 ~p~~ 1507 (1619)
+|+.
T Consensus 82 ~p~~ 85 (130)
T 2k4k_A 82 APEK 85 (130)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 8865
No 49
>2cqo_A Nucleolar protein of 40 kDa; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.31 E-value=2.4e-12 Score=129.28 Aligned_cols=96 Identities=26% Similarity=0.333 Sum_probs=86.0
Q ss_pred cccCCccccccccccceeEEEEEEEEcCCeEEEEEcC-CEEEEEeccccCccccCCCccccccCCCEEEEEEEEeeccc-
Q psy14505 1327 LGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEK-GIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEER- 1404 (1619)
Q Consensus 1327 ~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~fV~l~~-gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~- 1404 (1619)
..+++|..+...+++|+++.|+|+++.+||+||+|.+ +.+||||+++++| ....++.+.|++||.|+|+|+.+|+++
T Consensus 8 ~~~~~~~~~~~~~~vG~iv~G~V~~I~~fGaFV~l~g~~~~Glvhisel~~-~~~~~~~~~~~~Gd~V~VkV~~vd~~~~ 86 (119)
T 2cqo_A 8 MNSGRPETMENLPALYTIFQGEVAMVTDYGAFIKIPGCRKQGLVHRTHMSS-CRVDKPSEIVDVGDKVWVKLIGREMKND 86 (119)
T ss_dssp SCCCCCCCSCCSCCTTCEEEEEEEEEETTEEEEECTTCSSCEEEEHHHHCS-SCCSCHHHHCCTTCEEEEEEEEEEECSS
T ss_pred ccccchhhhhcccCCCCEEEEEEEEEeCceEEEEECCCcEEEEEEHHHCCc-ccccChhhcCCCCCEEEEEEEEEecccc
Confidence 3567888888899999999999999999999999954 4699999999998 457788899999999999999999864
Q ss_pred -ceEEEeeecccCCCCcccc
Q psy14505 1405 -RRISLGMKQCKDNPWENFS 1423 (1619)
Q Consensus 1405 -~ri~LSlK~~~~~~~~~~~ 1423 (1619)
+++.||+|+...+||..+.
T Consensus 87 ~~~i~LSlk~~~~~~~~~~~ 106 (119)
T 2cqo_A 87 RIKVSLSMKVVNQGTGKDLD 106 (119)
T ss_dssp CEEEEEESTTBCSSSCCBSC
T ss_pred CceEEEEEeecccCCccccC
Confidence 7999999999999998774
No 50
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.29 E-value=5.5e-12 Score=123.60 Aligned_cols=84 Identities=25% Similarity=0.460 Sum_probs=75.8
Q ss_pred ccccceEEEEEEEEEecceEEEeeCC---CeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecC
Q psy14505 1425 IHKKGEKIKGIIKSITDFGIFIGLDG---NIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQL 1501 (1619)
Q Consensus 1425 ~~~vG~~v~G~V~~i~~~GvfV~~~~---~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~ 1501 (1619)
.+++|+++.|+|+++++||+||++.+ ++.||||.++++++.+..++.+.|++||.|+|+|+++|+ ++|.||+|+.
T Consensus 9 ~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSlk~~ 86 (103)
T 2eqs_A 9 EPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSMKDV 86 (103)
T ss_dssp SCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEESTTB
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEEeec
Confidence 35789999999999999999999986 899999999995456678888999999999999999996 6999999999
Q ss_pred cCCCccccc
Q psy14505 1502 EGDPFNNYV 1510 (1619)
Q Consensus 1502 ~~~p~~~~~ 1510 (1619)
.++||....
T Consensus 87 ~~~~~~~~~ 95 (103)
T 2eqs_A 87 DQETGEDLN 95 (103)
T ss_dssp CTTTCCBCC
T ss_pred ccCCchhcC
Confidence 999998653
No 51
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.28 E-value=1.7e-13 Score=156.69 Aligned_cols=108 Identities=18% Similarity=0.327 Sum_probs=101.0
Q ss_pred cccceeEEEEEEEEcCCeEEEEEc--CCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeecccC
Q psy14505 1339 YPRGTRLLGKVTNLTDYGAFVEIE--KGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKD 1416 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~~G~fV~l~--~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~~ 1416 (1619)
.++|+++.|+|+++.++|+||++. ++++||||.|+++| ....++.+.|++||.|.|+|+++|++++++.||+|+...
T Consensus 9 p~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~-~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~ 87 (275)
T 3aev_A 9 PEEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVAS-TWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQ 87 (275)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCS-SCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCH
T ss_pred CCCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCc-ccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCc
Confidence 458999999999999999999998 69999999999998 567889999999999999999999999999999999988
Q ss_pred CCCcccccccccceEEEEEEEEEe-cceEEEe
Q psy14505 1417 NPWENFSIIHKKGEKIKGIIKSIT-DFGIFIG 1447 (1619)
Q Consensus 1417 ~~~~~~~~~~~vG~~v~G~V~~i~-~~GvfV~ 1447 (1619)
+||....+.++.|+.+.|.|.++. ++|++++
T Consensus 88 ~~~~~~~~~~~~g~~v~g~v~~v~~~~G~~~e 119 (275)
T 3aev_A 88 QQRKAKLQEFKRAQKAENLLRLAAEKLGKDFE 119 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred chhHHHHHhccCCCeEEEEEEEchhhcCCCHH
Confidence 999988899999999999999999 9998554
No 52
>2eqs_A ATP-dependent RNA helicase DHX8; S1 domain, OB-fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.27 E-value=1e-11 Score=121.69 Aligned_cols=87 Identities=29% Similarity=0.436 Sum_probs=77.7
Q ss_pred ccccccceeEEEEEEEEcCCeEEEEEcC---CEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeee
Q psy14505 1336 SFRYPRGTRLLGKVTNLTDYGAFVEIEK---GIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMK 1412 (1619)
Q Consensus 1336 ~~~l~~G~iv~g~V~~v~~~G~fV~l~~---gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK 1412 (1619)
...+++|+++.|+|+++.+||+||++.+ +++||||++++++.....++.+.|++||.|+|+|+.+|+ +++.||+|
T Consensus 7 ~~~~~vG~i~~G~V~~v~~fG~FV~l~~~~~~~~Glvhisel~~~~~~~~~~~~~~~Gd~V~VkV~~vd~--~~i~LSlk 84 (103)
T 2eqs_A 7 GEEPTIGDIYNGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVSKGQRVKVKVLSFTG--TKTSLSMK 84 (103)
T ss_dssp CSSCCTTCEEEEEEEEECSSCEEEEECSSSSCCEEEECGGGTSSSSCCCCHHHHCCTTCEEEEEEEEEET--TEEEEEST
T ss_pred cccCCCCCEEEEEEEEEeccEEEEEEcCCCCCeEEEEEHHHCCCCcccCCcccEeCCCCEEEEEEEEEEC--CeeEEEEe
Confidence 3468999999999999999999999986 899999999994335677888999999999999999996 69999999
Q ss_pred cccCCCCccccc
Q psy14505 1413 QCKDNPWENFSI 1424 (1619)
Q Consensus 1413 ~~~~~~~~~~~~ 1424 (1619)
+...+||..+..
T Consensus 85 ~~~~~~~~~~~~ 96 (103)
T 2eqs_A 85 DVDQETGEDLNP 96 (103)
T ss_dssp TBCTTTCCBCCS
T ss_pred ecccCCchhcCc
Confidence 999999987754
No 53
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.27 E-value=1.5e-11 Score=114.82 Aligned_cols=73 Identities=29% Similarity=0.463 Sum_probs=66.5
Q ss_pred cccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecCcC
Q psy14505 1426 HKKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEG 1503 (1619)
Q Consensus 1426 ~~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~~~ 1503 (1619)
+++|+++.|+|++++++|+||++.+++.||+|.++++|+. . +.|++||.|+|+|+++|+++++|.||+|+..+
T Consensus 3 ~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~-~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 3 VEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLR-L----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCC-G----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCccc-c----eeeCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 4789999999999999999999999999999999999633 2 67999999999999999999999999998754
No 54
>2k4k_A GSP13, general stress protein 13; cytoplasm, stress response, RNA binding protein; NMR {Bacillus subtilis}
Probab=99.26 E-value=1e-11 Score=126.88 Aligned_cols=83 Identities=33% Similarity=0.575 Sum_probs=77.7
Q ss_pred cccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeecccC
Q psy14505 1337 FRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKD 1416 (1619)
Q Consensus 1337 ~~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~~ 1416 (1619)
.++++|+++.|+|+++.++|+||++.++++||||+++++| ....++.+.|++||.|+|+|+.+|+++++|.||+|++..
T Consensus 3 ~~~~vG~iv~G~V~~i~~~G~FV~l~~~~~Glihisel~~-~~~~~~~~~~~vGd~V~vkV~~vd~~~~kI~LSlk~~~~ 81 (130)
T 2k4k_A 3 AKFEVGSVYTGKVTGLQAYGAFVALDEETQGLVHISEVTH-GFVKDINEHLSVGDEVQVKVLAVDEEKGKISLSIRATQA 81 (130)
T ss_dssp CCCCTTCEEEEEEEEEETTEEEEEEETTEEEEEEGGGTSS-SCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESHHHHH
T ss_pred CcCCCCCEEEEEEEEEeCCeEEEEECCCcEEEEEHHHCCc-ccccCccccCCCCCEEEEEEEEEeCCCCEEEEEEeeccc
Confidence 4689999999999999999999999999999999999998 557789999999999999999999999999999999988
Q ss_pred CCCc
Q psy14505 1417 NPWE 1420 (1619)
Q Consensus 1417 ~~~~ 1420 (1619)
+|+.
T Consensus 82 ~p~~ 85 (130)
T 2k4k_A 82 APEK 85 (130)
T ss_dssp SCCC
T ss_pred Cccc
Confidence 8875
No 55
>3aev_A Translation initiation factor 2 subunit alpha; proteins-rRNA complex, 16S rRNA, RNA-binding; 2.80A {Pyrococcus horikoshii} PDB: 1yz6_A
Probab=99.26 E-value=2.8e-13 Score=154.88 Aligned_cols=108 Identities=18% Similarity=0.355 Sum_probs=99.2
Q ss_pred ccceEEEEEEEEEecceEEEeeC--CCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecCcCC
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLD--GNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEGD 1504 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~--~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~~~~ 1504 (1619)
++|+++.|+|+++++||+||++. +++.||||.|+++| .+..++.+.|++||.|.|+|+++|+++++|.||+|....+
T Consensus 10 ~~Gdiv~G~V~~I~~fGaFV~L~e~~gieGlIhiSels~-~~v~~~~~~~kvGd~V~vkVi~vD~~~~~I~LSlk~~~~~ 88 (275)
T 3aev_A 10 EEGEFVVATVKRIHNYGAFLELDEYPGKEAFMHISEVAS-TWVRNIRDYLKEGQKVVAKVIRVDPRKGHIDLSLRRVTQQ 88 (275)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETTSTTCEEEEEGGGSCS-SCCSCGGGTCCTTCEEEEEEEEEETTTTEEEEESTTCCHH
T ss_pred CCCCEEEEEEEEEECcEEEEEECCCCCeEEEEEHHHcCc-ccccCHHhccCCCCEEEEEEEEEECCCCEEEEEEeecCcc
Confidence 48999999999999999999998 69999999999996 6678899999999999999999999999999999999889
Q ss_pred CcccccccCCCCCeEEEEEEEEecCceEEEE
Q psy14505 1505 PFNNYVNINDKGSLVNGIIKSIDTNKGAIIQ 1535 (1619)
Q Consensus 1505 p~~~~~~~~~~G~~v~g~V~~i~~~~G~~V~ 1535 (1619)
||....+.++.|+.+.|+|.++..++|++++
T Consensus 89 ~~~~~~~~~~~g~~v~g~v~~v~~~~G~~~e 119 (275)
T 3aev_A 89 QRKAKLQEFKRAQKAENLLRLAAEKLGKDFE 119 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTCCHH
T ss_pred hhHHHHHhccCCCeEEEEEEEchhhcCCCHH
Confidence 9998888899999999999999448887544
No 56
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.25 E-value=5.1e-12 Score=119.75 Aligned_cols=74 Identities=20% Similarity=0.354 Sum_probs=67.8
Q ss_pred ccceEEEEEEEEEecceEEEeeCC--CeEEEEeCC-CCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecCcC
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDG--NIDGLIHLS-DLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEG 1503 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~--~v~Glv~~s-els~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~~~ 1503 (1619)
++|+++.|+|+ +++||+||++.+ +++||+|.| +++| .+..++.+.| +||.|+|+|+++|+++++|.||+|...+
T Consensus 10 ~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~-~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~~~~ 86 (88)
T 1luz_A 10 NAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHM-DRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKRMCR 86 (88)
T ss_dssp CTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCH-HHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEEECS
T ss_pred CCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCc-ccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEeecCC
Confidence 78999999999 999999999974 899999999 9996 5567788888 9999999999999999999999998654
No 57
>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}
Probab=99.22 E-value=3.5e-11 Score=112.28 Aligned_cols=74 Identities=20% Similarity=0.409 Sum_probs=67.2
Q ss_pred ccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeecccC
Q psy14505 1338 RYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKD 1416 (1619)
Q Consensus 1338 ~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~~ 1416 (1619)
++++|+++.|+|+++.++|+||+++++++||+|.|+++|.. . +.|++||.|+|+|+++|++++++.||+|++..
T Consensus 2 ~~~~G~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~-~----~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~~~~ 75 (80)
T 2k52_A 2 DVEPGKFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLR-L----ENLNVGDEIIVQAIDVRPEKREIDFKYIPLEH 75 (80)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCC-G----GGCCTTCEEEEEEEEEETTTTEEEEEECSCC-
T ss_pred CCCCCCEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCccc-c----eeeCCCCEEEEEEEEEECCCCEEEEEEeeccc
Confidence 47899999999999999999999999999999999998732 2 68999999999999999999999999998653
No 58
>1luz_A Protein K3, protein K2; stranded anti-parallel beta barrel, viral protein; 1.80A {Vaccinia virus} SCOP: b.40.4.5
Probab=99.21 E-value=1.3e-11 Score=116.90 Aligned_cols=78 Identities=17% Similarity=0.278 Sum_probs=69.8
Q ss_pred cccccceeEEEEEEEEcCCeEEEEEcC--CEEEEEecc-ccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeec
Q psy14505 1337 FRYPRGTRLLGKVTNLTDYGAFVEIEK--GIEGLVHIS-EMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQ 1413 (1619)
Q Consensus 1337 ~~l~~G~iv~g~V~~v~~~G~fV~l~~--gv~GlV~~s-els~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~ 1413 (1619)
...++|+++.|+|+ +.+||+||++.+ +++||+|+| +++| ....++.+.+ +||.|+|+|+++|++++++.||+|+
T Consensus 7 ~~~~vG~~~~G~V~-v~~fG~FVel~~~~~~eGLvhis~el~~-~~~~~~~~~~-~Gd~V~VkV~~vd~~~~kI~lslk~ 83 (88)
T 1luz_A 7 SLPNAGDVIKGRVY-EKDYALYIYLFDYPHFEAILAESVKMHM-DRYVEYRDKL-VGKTVKVKVIRVDYTKGYIDVNYKR 83 (88)
T ss_dssp CCCCTTCEEEEEEE-EETTEEEEEETTCTTSEEEEGGGSSCCH-HHHHHHHHHH-TTCEEEEEEEEEETTTTEEEEEEEE
T ss_pred cCCCCCCEEEEEEE-EEccEEEEEECCCCCeEEEEEeeHHhCc-ccccCHhHEe-CCCEEEEEEEEEECCCCEEEEEEee
Confidence 35689999999999 999999999963 799999999 9998 4566788888 9999999999999999999999998
Q ss_pred ccCC
Q psy14505 1414 CKDN 1417 (1619)
Q Consensus 1414 ~~~~ 1417 (1619)
...+
T Consensus 84 ~~~~ 87 (88)
T 1luz_A 84 MCRH 87 (88)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 7543
No 59
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=99.05 E-value=6.5e-12 Score=161.29 Aligned_cols=139 Identities=24% Similarity=0.307 Sum_probs=53.7
Q ss_pred ccceeEE--EEEEE--EcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeeccc
Q psy14505 1340 PRGTRLL--GKVTN--LTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCK 1415 (1619)
Q Consensus 1340 ~~G~iv~--g~V~~--v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~ 1415 (1619)
+.|+++- |++.+ +.++|+||++++ +|.||++..+|.. ..... .++. ..
T Consensus 608 ki~~vIG~gGk~Ik~I~~~~G~~IdI~~--dG~v~Is~~~~~~-~~~a~--------------------~~i~-----~i 659 (757)
T 1e3p_A 608 KIGEVIGPKRQMINQIQEDTGAEITIED--DGTIYIGAADGPA-AEAAR--------------------ATIN-----GI 659 (757)
T ss_dssp -------------CTTCCCCCSCC----------CCCBSSHHH-HCC---------------------------------
T ss_pred HeehcccccceeeehhhHhhCCEEEecC--CceEEEecCCHHH-HHHHH--------------------HHHH-----Hh
Confidence 4566663 67776 578999999974 8999999998732 11110 0010 01
Q ss_pred CCCCcccccccccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCC----CCCCCccccccCCCCCCEEEEEEEEeecCC
Q psy14505 1416 DNPWENFSIIHKKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDL----SWTDPGEEIIRNFKKGDEIEAIILSIDVEK 1491 (1619)
Q Consensus 1416 ~~~~~~~~~~~~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sel----s~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~ 1491 (1619)
.+| ..+++|+++.|+|+++++||+||++.++++||||.|++ +| .++.++.+.|++||.|+|+|+++|+ +
T Consensus 660 ~~p-----~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~-~rv~~~~~~~~vGd~V~VkVi~vd~-~ 732 (757)
T 1e3p_A 660 ANP-----TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGG-KRVENVEDVLGVGQKVQVEIAEIDS-R 732 (757)
T ss_dssp ------------------CBEEECC-CSCEECCC---CCCCC--------------------CCSSCBCCCCCCCCCS-S
T ss_pred cch-----hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCC-CcccCcccccCCCCEEEEEEEEECC-C
Confidence 122 34588999999999999999999999999999999999 86 6678999999999999999999998 9
Q ss_pred CeEEEeeecCcCCCcccccccC
Q psy14505 1492 ERISLGIKQLEGDPFNNYVNIN 1513 (1619)
Q Consensus 1492 ~ri~LSlK~~~~~p~~~~~~~~ 1513 (1619)
+||.||+|+...+||....+++
T Consensus 733 grI~LS~k~~~~~pw~~~~~~~ 754 (757)
T 1e3p_A 733 GKLSLIPVIEGEEAASDEKKDD 754 (757)
T ss_dssp CC--------------------
T ss_pred CCEEEEEecCCCCchhhhhhcc
Confidence 9999999999999998765444
No 60
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=99.02 E-value=1.6e-10 Score=116.45 Aligned_cols=95 Identities=17% Similarity=0.209 Sum_probs=77.1
Q ss_pred EEeeecccCCCCcccccccccceEEEEEEEEEecceEEEeeC-CCeEEEEeCCCCC-CCCCccccccCCCCCCEEEEEEE
Q psy14505 1408 SLGMKQCKDNPWENFSIIHKKGEKIKGIIKSITDFGIFIGLD-GNIDGLIHLSDLS-WTDPGEEIIRNFKKGDEIEAIIL 1485 (1619)
Q Consensus 1408 ~LSlK~~~~~~~~~~~~~~~vG~~v~G~V~~i~~~GvfV~~~-~~v~Glv~~sels-~~~~~~~~~~~f~vGq~V~~~Vl 1485 (1619)
++|++|...+.+..+.+ +++|+++.|+|+++++||+||++. +++.|++|.++.. | ....++.+.|++||.|+|+|+
T Consensus 2 ~~sl~P~~vn~~~~~~~-l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~Gd~V~vkV~ 79 (119)
T 1wi5_A 2 SSGSSGKNVNRVLSAEA-LKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEY-IRQKNKGAKLKVGQYLNCIVE 79 (119)
T ss_dssp CCCCCCSCSSCCCCTTT-CCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHH-HHHHSSSCCCCTTCEEEEEEE
T ss_pred ccccCHHHhhccccHhc-CCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEeccccc-ccccCccCEeCCCCEEEEEEE
Confidence 36788888777766654 489999999999999999999998 5777777776642 2 122356788999999999999
Q ss_pred EeecCCCeEEEeeecCcCC
Q psy14505 1486 SIDVEKERISLGIKQLEGD 1504 (1619)
Q Consensus 1486 ~vd~e~~ri~LSlK~~~~~ 1504 (1619)
++|++++++.||+|+....
T Consensus 80 ~vd~~~~~i~Lslk~~~l~ 98 (119)
T 1wi5_A 80 KVKGNGGVVSLSVGHSEVS 98 (119)
T ss_dssp ECCTTSCEEEEECCCCCSC
T ss_pred EEeCCCCEEEEEEchhhcc
Confidence 9999999999999986543
No 61
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.02 E-value=2e-11 Score=139.40 Aligned_cols=102 Identities=17% Similarity=0.369 Sum_probs=94.8
Q ss_pred ccccceeEEEEEEEEcCCeEEEEEc--CCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeeccc
Q psy14505 1338 RYPRGTRLLGKVTNLTDYGAFVEIE--KGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCK 1415 (1619)
Q Consensus 1338 ~l~~G~iv~g~V~~v~~~G~fV~l~--~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~ 1415 (1619)
.+++|+++.|+|+++.++|+||+++ ++++||||.|+++| ....++.+.|++||.|.|+|+.+|++++++.||+|+..
T Consensus 8 ~~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~-~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~ 86 (266)
T 3cw2_C 8 LPSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSS-KWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVT 86 (266)
T ss_dssp SCCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSC-SSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTSC
T ss_pred cCCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCc-ccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEecc
Confidence 5789999999999999999999997 79999999999998 56788999999999999999999999999999999999
Q ss_pred CCCCcccccccccceEEEEEEEEEe
Q psy14505 1416 DNPWENFSIIHKKGEKIKGIIKSIT 1440 (1619)
Q Consensus 1416 ~~~~~~~~~~~~vG~~v~G~V~~i~ 1440 (1619)
.+||....+.++.|+.+.|.|..+.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~iv~~la 111 (266)
T 3cw2_C 87 DDERRKKNLQWKKIQRLDKILELVS 111 (266)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHhccccCccceeeeehh
Confidence 9999999889999998888887776
No 62
>3cw2_C Translation initiation factor 2 subunit alpha; AIF2, intact AIF2, initiation factor 2 alpha subunit, initiation factor 2 beta subunit; 2.80A {Sulfolobus solfataricus} PDB: 2aho_B 3v11_B*
Probab=99.01 E-value=1.2e-11 Score=141.28 Aligned_cols=101 Identities=18% Similarity=0.317 Sum_probs=91.4
Q ss_pred cccceEEEEEEEEEecceEEEeeC--CCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecCcC
Q psy14505 1426 HKKGEKIKGIIKSITDFGIFIGLD--GNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEG 1503 (1619)
Q Consensus 1426 ~~vG~~v~G~V~~i~~~GvfV~~~--~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~~~ 1503 (1619)
+++|+++.|+|+++++||+||++. +++.||||.|+++| .+..++.+.|++||.|.|+|+++|++++++.||+|....
T Consensus 9 ~~vG~iv~G~V~~I~~~GaFV~l~e~~~~~GlihiSels~-~~v~~~~~~~~vGd~V~VkVi~vd~~~g~I~LSlk~~~~ 87 (266)
T 3cw2_C 9 PSEGEILIATVKQVFDYGSYVSLDEYGGLQAFLPWSEVSS-KWVKNIRDVLKENRKVIVKVIRVDRRKGTVDVSLKKVTD 87 (266)
T ss_dssp CCTTCEEEEEEEECCSSSBEEEETTTTSEECBBCGGGSSC-SSCCCHHHHSCTTCEEEEEECCCCSSSCCCBEESTTSCT
T ss_pred CCCCCEEEEEEEEEeccEEEEEEcCCCCeEEEEEhHHcCc-ccccCHHHhCcCCCEEEEEEEEEeCCCCEEEEEEEecch
Confidence 368999999999999999999997 79999999999996 567888999999999999999999999999999999999
Q ss_pred CCcccccccCCCCCeEEEEEEEEe
Q psy14505 1504 DPFNNYVNINDKGSLVNGIIKSID 1527 (1619)
Q Consensus 1504 ~p~~~~~~~~~~G~~v~g~V~~i~ 1527 (1619)
+||....+.++.|+.+.|.|..+.
T Consensus 88 ~~~~~~~~~~~~~~~~~~iv~~la 111 (266)
T 3cw2_C 88 DERRKKNLQWKKIQRLDKILELVS 111 (266)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhccccCccceeeeehh
Confidence 999888788888877777776663
No 63
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=98.96 E-value=2e-11 Score=156.89 Aligned_cols=138 Identities=25% Similarity=0.313 Sum_probs=54.1
Q ss_pred CCcEE--EEEEEE--EecCeEEEEeCCEEEEeeccccCccccCCCccccccCCEEEEEEEEeecCCCeEEEeeeccccCC
Q psy14505 1256 EGCTV--KGVVKN--ITDYGAFIDLGGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQLGIDP 1331 (1619)
Q Consensus 1256 ~G~iv--~g~V~~--v~~~G~~V~l~gi~g~l~~sels~~~~~~~~~~~~vG~~v~vrVl~vd~~~~~i~LSlK~~~~~~ 1331 (1619)
.|+++ .|++.+ +.++|++|+++. +|.++++..+|.......+. ++ ...+|
T Consensus 609 i~~vIG~gGk~Ik~I~~~~G~~IdI~~-dG~v~Is~~~~~~~~~a~~~------i~-------------------~i~~p 662 (757)
T 1e3p_A 609 IGEVIGPKRQMINQIQEDTGAEITIED-DGTIYIGAADGPAAEAARAT------IN-------------------GIANP 662 (757)
T ss_dssp ------------CTTCCCCCSCC---------CCCBSSHHHHCC------------------------------------
T ss_pred eehcccccceeeehhhHhhCCEEEecC-CceEEEecCCHHHHHHHHHH------HH-------------------Hhcch
Confidence 34444 256666 467899999986 89999999887643322110 00 01122
Q ss_pred ccccccccccceeEEEEEEEEcCCeEEEEEcCCEEEEEecccc----CccccCCCccccccCCCEEEEEEEEeecccceE
Q psy14505 1332 WIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEM----DWINKNVTPSKIVQLNDTVEIMILEINEERRRI 1407 (1619)
Q Consensus 1332 ~~~~~~~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sel----s~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri 1407 (1619)
..+++|+++.|+|+++.+||+||++.++++||||+|++ +| .+..++.+.|++||+|+|+|+++|+ +++|
T Consensus 663 -----~~~~vG~i~~G~V~~i~~fGaFV~l~~g~eGLvHiSel~~~~s~-~rv~~~~~~~~vGd~V~VkVi~vd~-~grI 735 (757)
T 1e3p_A 663 -----TSPEVGERILGSVVKTTTFGAFVSLLPGKDGLLHISQIRKLAGG-KRVENVEDVLGVGQKVQVEIAEIDS-RGKL 735 (757)
T ss_dssp ---------------CBEEECC-CSCEECCC---CCCCC--------------------CCSSCBCCCCCCCCCS-SCC-
T ss_pred -----hhcccccEEEEEEEEccccEEEEEEcCCcEEEEEhHHhccccCC-CcccCcccccCCCCEEEEEEEEECC-CCCE
Confidence 35899999999999999999999999999999999999 98 5688999999999999999999998 9999
Q ss_pred EEeeecccCCCCccccccc
Q psy14505 1408 SLGMKQCKDNPWENFSIIH 1426 (1619)
Q Consensus 1408 ~LSlK~~~~~~~~~~~~~~ 1426 (1619)
.||+|+...+||......+
T Consensus 736 ~LS~k~~~~~pw~~~~~~~ 754 (757)
T 1e3p_A 736 SLIPVIEGEEAASDEKKDD 754 (757)
T ss_dssp -------------------
T ss_pred EEEEecCCCCchhhhhhcc
Confidence 9999999999998876554
No 64
>1wi5_A RRP5 protein homolog; S1 domain, OB-fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=98.95 E-value=7.6e-10 Score=111.47 Aligned_cols=93 Identities=14% Similarity=0.267 Sum_probs=77.0
Q ss_pred EeeeccccCCccccccccccceeEEEEEEEEcCCeEEEEEc-CCEEEEEecccc-CccccCCCccccccCCCEEEEEEEE
Q psy14505 1322 LGMKQLGIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIE-KGIEGLVHISEM-DWINKNVTPSKIVQLNDTVEIMILE 1399 (1619)
Q Consensus 1322 LSlK~~~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~fV~l~-~gv~GlV~~sel-s~~~~~~~~~~~~~vG~~V~vrVl~ 1399 (1619)
+|+++...+..... .++++|+++.|+|+++.+||+||+++ ++..|++|.++. +| ....++.+.|++||.|+|+|++
T Consensus 3 ~sl~P~~vn~~~~~-~~l~~G~i~~G~V~~v~~fG~fV~l~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~Gd~V~vkV~~ 80 (119)
T 1wi5_A 3 SGSSGKNVNRVLSA-EALKPGMLLTGTVSSLEDHGYLVDIGVDGTRAFLPLLKAQEY-IRQKNKGAKLKVGQYLNCIVEK 80 (119)
T ss_dssp CCCCCSCSSCCCCT-TTCCTTCEEEEEEEEECSSEEEEECCCSSCEEEEEHHHHHHH-HHHHSSSCCCCTTCEEEEEEEE
T ss_pred cccCHHHhhccccH-hcCCCCCEEEEEEEEEeCceEEEEECCCCeEEEEEEeccccc-ccccCccCEeCCCCEEEEEEEE
Confidence 57777777765543 46999999999999999999999998 578887777765 34 2334678899999999999999
Q ss_pred eecccceEEEeeecccC
Q psy14505 1400 INEERRRISLGMKQCKD 1416 (1619)
Q Consensus 1400 id~e~~ri~LSlK~~~~ 1416 (1619)
+|++++++.||+|+...
T Consensus 81 vd~~~~~i~Lslk~~~l 97 (119)
T 1wi5_A 81 VKGNGGVVSLSVGHSEV 97 (119)
T ss_dssp CCTTSCEEEEECCCCCS
T ss_pred EeCCCCEEEEEEchhhc
Confidence 99999999999998654
No 65
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.90 E-value=2.1e-09 Score=115.87 Aligned_cols=155 Identities=21% Similarity=0.176 Sum_probs=101.2
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCcccccc
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTTL 940 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 940 (1619)
.|.+.|++|+||+|+++.||+++|++|+|++.+++.. .|.+..+ .+.+ . |
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~d~~~~~~------~g~~~~~--~~~~---------~-------g------ 55 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQK------FNQKVSE--IFEQ---------K-------R------ 55 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH------HTSCHHH--HHHH---------H-------C------
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcccHHHHHH------cCCCHHH--HHHH---------c-------C------
Confidence 5788899999999999999999999999999998832 2332110 0000 0 0
Q ss_pred ccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEe-ccccCeee---ecCCCeEEEEEcCHHHHHHhchHHH-Hhc
Q psy14505 941 IRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVAD-GRDMGTTV---FPDAFLKIFLTADIKQRTKRRYKQL-MQK 1015 (1619)
Q Consensus 941 ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~-GRd~~~~v---~p~a~~kifl~A~~e~Ra~Rr~~~l-~~~ 1015 (1619)
.+..+....++.++++...+||+. |. +.++ ++++++.|||+||++++.+|...+. ..+
T Consensus 56 ---------------~~~~~~~~~~~~~~l~~~~~~vi~~g~--~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r~~~~r 118 (175)
T 1via_A 56 ---------------ENFFREQEQKMADFFSSCEKACIATGG--GFVNVSNLEKAGFCIYLKADFEYLKKRLDKDEISKR 118 (175)
T ss_dssp ---------------HHHHHHHHHHHHHHHTTCCSEEEECCT--TGGGSTTGGGGCEEEEEECCHHHHTTCCCGGGTTTS
T ss_pred ---------------HHHHHHHHHHHHHHHHccCCEEEECCC--CEehhhHHhcCCEEEEEeCCHHHHHHHHhcccCCCC
Confidence 012233344455667767788887 53 1111 4556799999999999999966542 111
Q ss_pred CCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhh
Q psy14505 1016 GFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFA 1071 (1619)
Q Consensus 1016 ~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~ 1071 (1619)
....+.+.+.+...+|+... ....+++|||+.++++++++.|++.+.
T Consensus 119 ~~~~~~~~i~~~~~~r~~~y---------~~~~~~~Idt~~~~~eev~~~I~~~l~ 165 (175)
T 1via_A 119 PLFYDEIKAKKLYNERLSKY---------EQKANFILNIENKNIDELLSEIKKVIK 165 (175)
T ss_dssp CTTCCHHHHHHHHHHHHHHH---------HHHCSEEEECTTCCHHHHHHHHHHHHC
T ss_pred CCcccHHHHHHHHHHHHHHH---------HhcCCEEEECCCCCHHHHHHHHHHHHH
Confidence 11112555665555554221 122359999999999999999987764
No 66
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.89 E-value=1.6e-10 Score=148.05 Aligned_cols=125 Identities=26% Similarity=0.438 Sum_probs=0.0
Q ss_pred EEEEE-cCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeecccCCCCccccccc
Q psy14505 1348 KVTNL-TDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFSIIH 1426 (1619)
Q Consensus 1348 ~V~~v-~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~~~~~~~~~~~~ 1426 (1619)
+|..+ .++|+|+++++ +|.++++..+|. ....... .+..+...+
T Consensus 581 ~I~~I~~~~G~~IdI~~--dg~v~I~~~~~~-~~~~a~~--------------------------------~i~~i~~~~ 625 (723)
T 3cdi_A 581 VIRALTEETGTTIEIED--DGTVKIAATDGE-KAKHAIR--------------------------------RIEEITAEI 625 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred eeeeeehhhCceEEecC--CccEEEecCCHH-HHHHHHH--------------------------------HHHHHhhhh
Confidence 35555 45799999964 788888877651 1111100 111222345
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecCcCCCc
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEGDPF 1506 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~~~~p~ 1506 (1619)
++|+++.|+|+++++||+||++.+++.||||.|+++| .++.++.+.|++||.|+|+|+++|+ ++||.||+|...++||
T Consensus 626 ~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~-~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~~~g 703 (723)
T 3cdi_A 626 EVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATEQSQ 703 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCC-ccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEeccCCCC
Confidence 8999999999999999999999999999999999996 5678999999999999999999998 9999999999887777
Q ss_pred ccc
Q psy14505 1507 NNY 1509 (1619)
Q Consensus 1507 ~~~ 1509 (1619)
...
T Consensus 704 ~~~ 706 (723)
T 3cdi_A 704 PAA 706 (723)
T ss_dssp ---
T ss_pred ccc
Confidence 654
No 67
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.89 E-value=1.2e-09 Score=124.44 Aligned_cols=161 Identities=16% Similarity=0.190 Sum_probs=103.0
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
..|.+.|+.|+||+|.++.+|+.+|++|+|++.+++..+ .|.+. ..+-+.
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~~-----~g~~i---~~i~~~---------------------- 98 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQAM-----KGTSV---AEIFEH---------------------- 98 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHS-----TTSCH---HHHHHH----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHHh-----cCccH---HHHHHH----------------------
Confidence 357788999999999999999999999999999988433 12221 111000
Q ss_pred cccccccccccccccccHHHHHHHHHHHHhhhc--CCCeEEeccccCeeeecCC------CeEEEEEcCHHHHHHhchH-
Q psy14505 940 LIRNEKVSNNASKIAKFKNIRKELFKIQVKFRK--FPGLVADGRDMGTTVFPDA------FLKIFLTADIKQRTKRRYK- 1010 (1619)
Q Consensus 940 ~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~--~~~~V~~GRd~~~~v~p~a------~~kifl~A~~e~Ra~Rr~~- 1010 (1619)
......|+...+...+++. .+.+|..|. |.++.|++ ++.|||+||++++++|..+
T Consensus 99 --------------~ge~~fr~~e~~~l~~l~~~~~~~Via~Gg--G~v~~~~~~~~l~~~~vV~L~a~~e~l~~Rl~~~ 162 (250)
T 3nwj_A 99 --------------FGESVFREKETEALKKLSLMYHQVVVSTGG--GAVIRPINWKYMHKGISIWLDVPLEALAHRIAAV 162 (250)
T ss_dssp --------------HCHHHHHHHHHHHHHHHHHHCSSEEEECCG--GGGGSHHHHHHHTTSEEEEEECCHHHHHHHHHC-
T ss_pred --------------hCcHHHHHHHHHHHHHHHhhcCCcEEecCC--CeecCHHHHHHHhCCcEEEEECCHHHHHHHHhhc
Confidence 0111334444444555554 355666775 66665543 7899999999999999553
Q ss_pred HHHhcCCCCC----------HHHHHHHHHhhhhhcccCCCCCCCCCCCceE-----------EccCcccchhhhhhhhhh
Q psy14505 1011 QLMQKGFSVS----------MSDLLINLIKRDIRDKTRNLSPLKCPEQAHL-----------LNTSKMNINQVVNQILDC 1069 (1619)
Q Consensus 1011 ~l~~~~~~~~----------~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~-----------Idts~l~ieevv~~I~~~ 1069 (1619)
+...+....+ .+.+.+.+.+|+.. ....|+++ ||||.++++++++.|++.
T Consensus 163 ~~~~Rpl~~~~~~~d~~~~~~~~l~~l~~eR~~l---------Y~~ad~vi~~~~~~~~~~~iDTs~~s~eev~~~I~~~ 233 (250)
T 3nwj_A 163 GTGSRPLLHDDESGDTYTAALNRLSTIWDARGEA---------YTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQ 233 (250)
T ss_dssp ---------------CHHHHHHHHHHHHHHHHHH---------HTTSSEEEEHHHHHHHHTCSSGGGCCHHHHHHHHHHH
T ss_pred CCCCCCcccCCCcccchhhHHHHHHHHHHHHHHH---------HhhCCEEEEecccccccccccCCCCCHHHHHHHHHHH
Confidence 1111111111 35566666676633 22344444 499999999999999998
Q ss_pred hhhhhh
Q psy14505 1070 FATLFK 1075 (1619)
Q Consensus 1070 i~~ll~ 1075 (1619)
+..++.
T Consensus 234 i~~~~~ 239 (250)
T 3nwj_A 234 VQSYLE 239 (250)
T ss_dssp HHHHHH
T ss_pred HHHHhh
Confidence 887664
No 68
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=98.83 E-value=3.6e-10 Score=144.85 Aligned_cols=85 Identities=32% Similarity=0.511 Sum_probs=0.0
Q ss_pred cccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeecccC
Q psy14505 1337 FRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKD 1416 (1619)
Q Consensus 1337 ~~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~~ 1416 (1619)
.++++|+++.|+|+++.+||+||++.++++||||+|+++| .+..++.+.|++||.|+|+|+++|+ +++|.||+|+...
T Consensus 623 ~~~~vG~i~~G~V~~i~~fGaFVel~~g~eGLvHiSel~~-~~v~~~~~~~~vGd~V~VkVi~vd~-~grI~LS~k~~~~ 700 (723)
T 3cdi_A 623 AEIEVGRVYTGKVTRIVDFGAFVAIGGGKEGLVHISQIAD-KRVEKVTDYLQMGQEVPVKVLEVDR-QGRIRLSIKEATE 700 (723)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred hhhhcCcEEEEEEEEEecceEEEEeCCCceEEEEHHHcCC-ccccCcccccCCCCEEEEEEEEECC-CCcEEEEEEeccC
Confidence 4689999999999999999999999999999999999998 5678999999999999999999998 8999999999988
Q ss_pred CCCcccc
Q psy14505 1417 NPWENFS 1423 (1619)
Q Consensus 1417 ~~~~~~~ 1423 (1619)
+||....
T Consensus 701 ~~g~~~~ 707 (723)
T 3cdi_A 701 QSQPAAA 707 (723)
T ss_dssp -------
T ss_pred CCCcccC
Confidence 8887654
No 69
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.80 E-value=3.7e-09 Score=116.99 Aligned_cols=186 Identities=12% Similarity=0.103 Sum_probs=107.6
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
++|.+.|+.|+||+|+++.++. +|++++|++.++|.+.. .+ ...+.+.....+..+.. -+|.--..
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id~d~~~~~~~~----~~-----~~~~~~i~~~~g~~~~~----~~g~~~r~ 68 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVDADVVAREVVA----KD-----SPLLSKIVEHFGAQILT----EQGELNRA 68 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEEHHHHHHHTTC----SS-----CHHHHHHHHHHCTTCC----------CHH
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccchHHHHHHHcc----CC-----hHHHHHHHHHhCHHHhc----cCccccHH
Confidence 3688889999999999999988 99999999999985421 11 01111111111111000 00000000
Q ss_pred cccc-----cccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCee-eecCCCeEEEEEcCHHHHHHhchHHHH
Q psy14505 940 LIRN-----EKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTT-VFPDAFLKIFLTADIKQRTKRRYKQLM 1013 (1619)
Q Consensus 940 ~ir~-----~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~-v~p~a~~kifl~A~~e~Ra~Rr~~~l~ 1013 (1619)
.++. +..-.... -..+|.+++.+.+.++.. ..+.+|++|++.... +.+.++..|||+||+++|++|+..+
T Consensus 69 ~l~~~~f~~~~~~~~l~-~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~~~e~~~~Rl~~R-- 144 (206)
T 1jjv_A 69 ALRERVFNHDEDKLWLN-NLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQR-- 144 (206)
T ss_dssp HHHHHHHTCHHHHHHHH-HHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEECCHHHHHHHHC----
T ss_pred HHHHHHhCCHHHHHHHH-hccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEECCHHHHHHHHHHc--
Confidence 0000 00000001 124677777776655543 345789999876543 5677889999999999999995433
Q ss_pred hcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccch----hhhhhhhhhhhhhh
Q psy14505 1014 QKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNIN----QVVNQILDCFATLF 1074 (1619)
Q Consensus 1014 ~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ie----evv~~I~~~i~~ll 1074 (1619)
.+.+.+++.+.+..+ .. ..|+....| ++||++. +++ ++++.|.+.+..++
T Consensus 145 ---~~~~~e~~~~r~~~q----~~--~~~~~~~ad-~vIdn~~-~~~~~~~~~~~~i~~~~~~~~ 198 (206)
T 1jjv_A 145 ---DNNNFEQIQRIMNSQ----VS--QQERLKWAD-DVINNDA-ELAQNLPHLQQKVLELHQFYL 198 (206)
T ss_dssp ------CHHHHHHHHHHS----CC--HHHHHHHCS-EEEECCS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCCHHHHHHHHHhc----CC--hHHHHHhCC-EEEECCC-CccccHHHHHHHHHHHHHHHH
Confidence 245777776655431 11 112222233 7899998 999 88888877766544
No 70
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.78 E-value=7.1e-10 Score=141.25 Aligned_cols=90 Identities=21% Similarity=0.368 Sum_probs=0.4
Q ss_pred CCcccccccccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEe
Q psy14505 1418 PWENFSIIHKKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLG 1497 (1619)
Q Consensus 1418 ~~~~~~~~~~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LS 1497 (1619)
.|..+...+++|+++.|+|++|++||+||++.++++||||.|+++| +++.++.+.|++||.|+|+|+++|+ ++||.||
T Consensus 627 ~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~-~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS 704 (726)
T 4aid_A 627 WIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISN-ERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLS 704 (726)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCc-ccccCccccCCCCCEEEEEEEEECC-CCcEEEE
Confidence 3555556678999999999999999999999999999999999996 6778999999999999999999997 8999999
Q ss_pred eecCcCCCcccc
Q psy14505 1498 IKQLEGDPFNNY 1509 (1619)
Q Consensus 1498 lK~~~~~p~~~~ 1509 (1619)
+|...++|+..+
T Consensus 705 ~K~~~~~~G~~~ 716 (726)
T 4aid_A 705 MKVVDQETGEDL 716 (726)
T ss_dssp ------------
T ss_pred EeecccCcchhh
Confidence 999988887665
No 71
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.76 E-value=1.1e-08 Score=137.04 Aligned_cols=78 Identities=10% Similarity=0.090 Sum_probs=72.3
Q ss_pred cccccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecC
Q psy14505 1424 IIHKKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQL 1501 (1619)
Q Consensus 1424 ~~~~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~ 1501 (1619)
+.+++|+++.|+|++|++||+||++.+|+.||||+|+++|+.++.+|.+.|++||.|+|+|++||.+++||.||+|..
T Consensus 898 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~ 975 (1219)
T 3psi_A 898 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDH 975 (1219)
T ss_dssp TTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHH
T ss_pred hhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHH
Confidence 345899999999999999999999999999999999999754478999999999999999999999999999999965
No 72
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=98.73 E-value=1.3e-09 Score=138.94 Aligned_cols=93 Identities=26% Similarity=0.401 Sum_probs=0.4
Q ss_pred CccccccccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEe
Q psy14505 1331 PWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLG 1410 (1619)
Q Consensus 1331 ~~~~~~~~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LS 1410 (1619)
.+..+..++++|++|.|+|+++.+||+||++.++++||||+|+++| .+..++.+.|++||.|+|+|+++|+ ++++.||
T Consensus 627 ~i~~i~~~~~vG~v~~G~V~~I~~fGaFVel~~g~eGLvHiSels~-~rv~~~~d~~kvGD~V~VkVi~iD~-~grI~LS 704 (726)
T 4aid_A 627 WIKSITDEAEVGKIYDGKVVKVVDFGAFVNFFGAKDGLVHVSQISN-ERVAKPSDVLKEGQMVKVKLLGFDD-RGKTKLS 704 (726)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred HHHHHhhhhcCCcEEEEEEEEEeccEEEEEECCCcEEEEEHHHcCc-ccccCccccCCCCCEEEEEEEEECC-CCcEEEE
Confidence 4555566899999999999999999999999999999999999999 6678999999999999999999997 7999999
Q ss_pred eecccCCCCcccccc
Q psy14505 1411 MKQCKDNPWENFSII 1425 (1619)
Q Consensus 1411 lK~~~~~~~~~~~~~ 1425 (1619)
+|+...+|+..+.++
T Consensus 705 ~K~~~~~~G~~~~~k 719 (726)
T 4aid_A 705 MKVVDQETGEDLSKK 719 (726)
T ss_dssp ---------------
T ss_pred EeecccCcchhhhhh
Confidence 999988888777544
No 73
>3psi_A Transcription elongation factor SPT6; nucleus; 3.30A {Saccharomyces cerevisiae}
Probab=98.71 E-value=1.8e-08 Score=134.94 Aligned_cols=80 Identities=9% Similarity=0.106 Sum_probs=74.1
Q ss_pred ccccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeeccc
Q psy14505 1336 SFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCK 1415 (1619)
Q Consensus 1336 ~~~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~ 1415 (1619)
.+++++|++|.|+|++|.+||+||+|+.|++|+||+|+|+|...+.+|.+.|++||.|+|+|+++|.++++|.||+|.+.
T Consensus 897 ~~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~p~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~d 976 (1219)
T 3psi_A 897 EKTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHD 976 (1219)
T ss_dssp TTTSCTTCEEEEEEEEECSSCEEEECTTSCEEEECTTSSSSTTSCSCSTTTSCTTCEEEEEEEEEEGGGTEEEEECCHHH
T ss_pred HhhCCCCCEEEEEEEEEecceEEEEeCCCceEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEecHHH
Confidence 35799999999999999999999999999999999999999433789999999999999999999999999999999754
No 74
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.69 E-value=6.1e-08 Score=103.48 Aligned_cols=155 Identities=17% Similarity=0.238 Sum_probs=94.3
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCcccc
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVT 938 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 938 (1619)
+.+|.+.|..|+||+|+++.||+++|++|+|++.+++... |... .++ ... + |+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D~~~~~~~------g~~~---~~~---~~~----~--------g~--- 59 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTDMIISERV------GLSV---REI---FEE----L--------GE--- 59 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSCH---HHH---HHH----T--------CH---
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHHHh------CCCH---HHH---HHH----h--------CH---
Confidence 4578889999999999999999999999999999887331 3221 111 000 0 10
Q ss_pred ccccccccccccccccccHHHHHHHHHHHHhhhcCCCe-EEe-ccccCeee---ecCCCeEEEEEcCHHHHHHhchHHHH
Q psy14505 939 TLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGL-VAD-GRDMGTTV---FPDAFLKIFLTADIKQRTKRRYKQLM 1013 (1619)
Q Consensus 939 ~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~-V~~-GRd~~~~v---~p~a~~kifl~A~~e~Ra~Rr~~~l~ 1013 (1619)
+..+....+..++++..+++ |+. |+ +.++ ++.+++.|||+||+++|.+|...+..
T Consensus 60 ------------------~~~~~~~~~~l~~~~~~~~~~Vi~~g~--g~~~~~~l~~~~~vi~l~~~~e~~~~Rl~~r~~ 119 (168)
T 1zuh_A 60 ------------------DNFRMFEKNLIDELKTLKTPHVISTGG--GIVMHENLKGLGTTFYLKMDFETLIKRLNQKER 119 (168)
T ss_dssp ------------------HHHHHHHHHHHHHHHTCSSCCEEECCG--GGGGCGGGTTSEEEEEEECCHHHHHHHHCC---
T ss_pred ------------------HHHHHHHHHHHHHHHhcCCCEEEECCC--CEechhHHhcCCEEEEEECCHHHHHHHHhccCC
Confidence 11223334445556666677 775 32 2222 35567999999999999999443310
Q ss_pred hcCCCCC-HHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhh
Q psy14505 1014 QKGFSVS-MSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCF 1070 (1619)
Q Consensus 1014 ~~~~~~~-~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i 1070 (1619)
......+ .+++.+.+.+|..... ....++||++. +++++++.|.+.+
T Consensus 120 ~~r~~~~~~~~~~~~~~~r~~~~~---------~~a~~~Id~~~-~~e~~~~~I~~~l 167 (168)
T 1zuh_A 120 EKRPLLNNLTQAKELFEKRQALYE---------KNASFIIDARG-GLNNSLKQVLQFI 167 (168)
T ss_dssp -----CCTTHHHHHHHHHHHHHHH---------HTCSEEEEGGG-CHHHHHHHHHHC-
T ss_pred CCCCCccCHHHHHHHHHHHHHHHH---------HHCCEEEECCC-CHHHHHHHHHHHh
Confidence 0011122 4555555555443211 11248899999 9999999987653
No 75
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=98.69 E-value=6.7e-09 Score=118.91 Aligned_cols=187 Identities=21% Similarity=0.271 Sum_probs=110.4
Q ss_pred cccEEEecCCcCCCCchhHHHHHHHhCCE----------EechhhHHHHHHHH----HHHcCCCCCcHHH-----HHHHH
Q psy14505 858 YIPVITIDGPTASGKGTVAQLVASKLGFH----------YLDSGALYRLVTLS----AINNNIQLDNELE-----LVILI 918 (1619)
Q Consensus 858 ~~~iIti~g~~gsGK~~~~~~la~~l~~~----------~~dtg~~yr~~~~~----a~~~~~~~~~~~~-----~~~~~ 918 (1619)
..++|.+.|+.||||+|+++.|++.+|++ ++|++.+|+.++.. +....+...+++. +.+.+
T Consensus 21 ~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~l~~~L 100 (252)
T 1uj2_A 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNELILKTL 100 (252)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHHHHHHH
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHHHHHHH
Confidence 34689999999999999999999999998 79999999843321 1111222221111 11221
Q ss_pred HcccceecCceEEeCCccccccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeeecC------CC
Q psy14505 919 KKLNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFPD------AF 992 (1619)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~p~------a~ 992 (1619)
..+. .+..+....-|. +..+.+.+. ......+.+|+||- +++++ .+
T Consensus 101 ~~l~---~~~~v~~~~~d~----------------~~~~~~~~~-----~~~~~~~~vIveG~----~~~~~~~~~~~~d 152 (252)
T 1uj2_A 101 KEIT---EGKTVQIPVYDF----------------VSHSRKEET-----VTVYPADVVLFEGI----LAFYSQEVRDLFQ 152 (252)
T ss_dssp HHHH---TTCCEEEEEEET----------------TTTEEEEEE-----EEECCCSEEEEECT----TTTSSHHHHHHCS
T ss_pred HHHH---cCCeeecCcccc----------------ccccCCCce-----eeeCCCcEEEEeee----ccccCHHHHHhcC
Confidence 1110 000000000000 000000000 01123456899994 23333 67
Q ss_pred eEEEEEcCHHHHHHhchHH-HHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceE---EccCcccchhhhhhhhh
Q psy14505 993 LKIFLTADIKQRTKRRYKQ-LMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHL---LNTSKMNINQVVNQILD 1068 (1619)
Q Consensus 993 ~kifl~A~~e~Ra~Rr~~~-l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~---Idts~l~ieevv~~I~~ 1068 (1619)
+.|||+||+++|.+|+..+ +..++ .+.+++.+.+..|+..+..+.+.|+....|.++ ||+ ..+++++++.|.+
T Consensus 153 ~vi~l~~~~e~~~~R~~~R~~~~rg--~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~-~~s~e~v~~~I~~ 229 (252)
T 1uj2_A 153 MKLFVDTDADTRLSRRVLRDISERG--RDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADN-LVAINLIVQHIQD 229 (252)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHHSC--CCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGC-HHHHHHHHHHHHH
T ss_pred eeEEEeCCHHHHHHHHHHHHHhhhC--CCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCC-hhHHHHHHHHHHH
Confidence 9999999999999997765 22234 488999999888876555555566655555443 388 7899999999988
Q ss_pred hhhhhhh
Q psy14505 1069 CFATLFK 1075 (1619)
Q Consensus 1069 ~i~~ll~ 1075 (1619)
.+...++
T Consensus 230 ~l~~~~~ 236 (252)
T 1uj2_A 230 ILNGGPS 236 (252)
T ss_dssp HHHC---
T ss_pred HHccchh
Confidence 7766554
No 76
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.63 E-value=4.5e-08 Score=106.70 Aligned_cols=78 Identities=31% Similarity=0.453 Sum_probs=66.8
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCcc-----------ccccCCCCCCEEEEEEEEeecCCC---
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGE-----------EIIRNFKKGDEIEAIILSIDVEKE--- 1492 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~-----------~~~~~f~vGq~V~~~Vl~vd~e~~--- 1492 (1619)
.+|+++.|+|++++++|+||++.+ ++||+|.+++++ .+.. ++.+.|++||.|+|+|+++|.+++
T Consensus 80 ~~Gev~~G~V~~v~~~G~fV~l~~-~eglvhis~l~~-~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~p~ 157 (187)
T 1go3_E 80 EMYELIEGEVVDVVEFGSFVRLGP-LDGLIHVSQIMD-DYVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAERKR 157 (187)
T ss_dssp CTTCEEEEEEEEEETTEEEEECSS-SEEEEEGGGSCS-SCEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC----
T ss_pred CCCCEEEEEEEEEeCcEEEEEEcC-ccEEEEhHHhCC-CcceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCCCC
Confidence 579999999999999999999965 999999999995 3333 667889999999999999998766
Q ss_pred --eEEEeeecCcCCCc
Q psy14505 1493 --RISLGIKQLEGDPF 1506 (1619)
Q Consensus 1493 --ri~LSlK~~~~~p~ 1506 (1619)
++.||+|.....|+
T Consensus 158 ~~~I~lS~k~~~LG~~ 173 (187)
T 1go3_E 158 GSKIALTMRQPYLGKL 173 (187)
T ss_dssp -CEEEEECCSTTCEEH
T ss_pred ccEEEEEEcCCCCCcH
Confidence 99999998654443
No 77
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.62 E-value=1.6e-08 Score=130.30 Aligned_cols=76 Identities=26% Similarity=0.552 Sum_probs=71.7
Q ss_pred cccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecCc
Q psy14505 1426 HKKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLE 1502 (1619)
Q Consensus 1426 ~~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~~ 1502 (1619)
+++|+++.|+|++|++||+||+++.+++||||.|+++| .++.++.+.|++||.|+|+|++||+++++|.||+|...
T Consensus 652 l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd-~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 652 LKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSE-KFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp CCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCS-SCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred cCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCc-cccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 48999999999999999999999889999999999996 78889999999999999999999999999999999643
No 78
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.59 E-value=5.3e-09 Score=137.98 Aligned_cols=79 Identities=10% Similarity=0.100 Sum_probs=0.0
Q ss_pred cccccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecCc
Q psy14505 1424 IIHKKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLE 1502 (1619)
Q Consensus 1424 ~~~~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~~ 1502 (1619)
..+++|+++.|+|++|++||+||++.+|+.||||+|+++|..++.+|.+.|++||.|+|+|++||++++||.||+|...
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~d 979 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHD 979 (1030)
T ss_dssp -------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEechHH
Confidence 3458999999999999999999999999999999999996443789999999999999999999999999999999764
No 79
>1go3_E DNA-directed RNA polymerase subunit E; transferase, transferase, transcription; 1.75A {Methanococcus jannaschii} SCOP: b.40.4.5 d.230.1.1
Probab=98.59 E-value=5.9e-08 Score=105.76 Aligned_cols=79 Identities=23% Similarity=0.350 Sum_probs=67.5
Q ss_pred ccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCC-----------CccccccCCCEEEEEEEEeecccc-
Q psy14505 1338 RYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNV-----------TPSKIVQLNDTVEIMILEINEERR- 1405 (1619)
Q Consensus 1338 ~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~-----------~~~~~~~vG~~V~vrVl~id~e~~- 1405 (1619)
...+|+++.|+|+++.++|+||+++ .++||+|.|++++. ... ++...|++||.|+|+|+++|.+.+
T Consensus 78 ~~~~Gev~~G~V~~v~~~G~fV~l~-~~eglvhis~l~~~-~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~ 155 (187)
T 1go3_E 78 IPEMYELIEGEVVDVVEFGSFVRLG-PLDGLIHVSQIMDD-YVSYDPKREAIIGKETGKVLEIGDYVRARIVAISLKAER 155 (187)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSS-CEEECCC--CEEETTTCCEECTTCEEEEEEEEEECCC--
T ss_pred ccCCCCEEEEEEEEEeCcEEEEEEc-CccEEEEhHHhCCC-cceECCccceEEecCCCeEEcCCCEEEEEEEEEEcccCC
Confidence 3678999999999999999999996 49999999999762 222 678899999999999999998765
Q ss_pred ----eEEEeeecccCCC
Q psy14505 1406 ----RISLGMKQCKDNP 1418 (1619)
Q Consensus 1406 ----ri~LSlK~~~~~~ 1418 (1619)
++.||+|+....+
T Consensus 156 p~~~~I~lS~k~~~LG~ 172 (187)
T 1go3_E 156 KRGSKIALTMRQPYLGK 172 (187)
T ss_dssp ---CEEEEECCSTTCEE
T ss_pred CCccEEEEEEcCCCCCc
Confidence 9999999865544
No 80
>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A
Probab=98.57 E-value=2e-08 Score=129.42 Aligned_cols=78 Identities=35% Similarity=0.549 Sum_probs=73.3
Q ss_pred cccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeeccc
Q psy14505 1337 FRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCK 1415 (1619)
Q Consensus 1337 ~~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~ 1415 (1619)
.++++|+++.|+|++|.+||+||+++.+++||||+|+|+| ....+|.+.|++||.|+|+|+++|+++++|.||+|...
T Consensus 650 ~~l~vG~iv~G~V~~V~~fGaFV~l~~~~eGLVhiS~Lsd-~~v~d~~~~~~vGd~V~VkVi~VD~~~~rI~LSlk~~~ 727 (785)
T 3bzc_A 650 KDLKPGMVLEGVVTNVTNFGAFVDIGVHQDGLVHISALSE-KFVKDPYEVVKAGDIVKVKVMEVDIPRNRVGLSMRMSD 727 (785)
T ss_dssp TTCCTTCBCCCEEEEEETTEEEEECSSSSEEEEETTTSCS-SCCSCHHHHCCTTCCCCCBEEEEETTTTEEEECCSSCC
T ss_pred hhcCCCCEEEEEEEEEecCCeEEEeCCCcEEEEEHHHcCc-cccCChhheeCCCCEEEEEEEEEECCCCEEEEEEecCC
Confidence 3689999999999999999999999989999999999998 67889999999999999999999999999999999653
No 81
>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}
Probab=98.53 E-value=1.1e-08 Score=135.14 Aligned_cols=80 Identities=9% Similarity=0.093 Sum_probs=0.0
Q ss_pred cccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeecccC
Q psy14505 1337 FRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKD 1416 (1619)
Q Consensus 1337 ~~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~~ 1416 (1619)
.++++|++|.|+|++|.+||+||++++|++||||+|+++|...+.+|.+.|++||.|+|+|+++|.++++|.||+|+...
T Consensus 901 ~~l~~G~iv~G~V~~V~~fGaFV~L~~gveGLVHiSelsd~~~v~~~~~v~kvGd~V~vkVl~VD~~~~rI~LSlk~~dl 980 (1030)
T 3psf_A 901 KTFFKGSIIPVRVERFWHNDIICTTNSEVECVVNAQRHAGAQLRRPANEIYEIGKTYPAKVIYIDYANITAEVSLLDHDV 980 (1030)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHhcCCCEEEEEEEEEccCeEEEEeCCCcEEEEEHHHcCCCcccCCHHHcCCCCCEEEEEEEEEECCCCEEEEEechHHh
Confidence 57999999999999999999999999999999999999984337889999999999999999999999999999998653
No 82
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.52 E-value=1.3e-07 Score=102.49 Aligned_cols=78 Identities=26% Similarity=0.472 Sum_probs=64.2
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCc----------cccccCCCCCCEEEEEEEEeecC----CC
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPG----------EEIIRNFKKGDEIEAIILSIDVE----KE 1492 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~----------~~~~~~f~vGq~V~~~Vl~vd~e----~~ 1492 (1619)
.+|+++.|+|++++++|+||++. .++||+|+++++++... ++....|++||.|+++|+++|++ ..
T Consensus 80 ~~Gev~~G~V~~v~~~G~fv~l~-~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~~~ 158 (180)
T 4ayb_E 80 VVQEVVEGEVLQVDNYGVFVNLG-PMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRLP 158 (180)
T ss_dssp CTTCEEEEEEEEEETTEEEEECS-SSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC-------
T ss_pred cCCCEEEEEEeeeccceEEEEEC-CccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCcccC
Confidence 57999999999999999999995 59999999999964322 45667899999999999999975 34
Q ss_pred eEEEeeecCcCCC
Q psy14505 1493 RISLGIKQLEGDP 1505 (1619)
Q Consensus 1493 ri~LSlK~~~~~p 1505 (1619)
||.||+|+.-..|
T Consensus 159 rI~ls~k~~gLG~ 171 (180)
T 4ayb_E 159 RIALTMRQPYLGK 171 (180)
T ss_dssp CEEEECCSTTCEE
T ss_pred cEEEEcCCCCCCC
Confidence 8999999854333
No 83
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.52 E-value=1.3e-07 Score=103.24 Aligned_cols=178 Identities=18% Similarity=0.223 Sum_probs=100.3
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCcccc
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVT 938 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 938 (1619)
..+|.+.|++|+||+|.++.|++++|++++|+|.++|... ..|- .....+.+... +|+.+.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~----~~~~--~~~~~i~~~~~-------------~g~~~~ 69 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEV----SSGS--ARGKKLSEIME-------------KGQLVP 69 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH----HTTC--HHHHHHHHHHH-------------TTCCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHH----HcCC--hHHHHHHHHHH-------------cCCcCC
Confidence 3578889999999999999999999999999999998432 2221 01112222111 121111
Q ss_pred ccccccccccccccccccHHHHHHHHHHHHh-hhcCCCeEEec--cccCee-----eecCCCeEEEEEcCHHHHHHhchH
Q psy14505 939 TLIRNEKVSNNASKIAKFKNIRKELFKIQVK-FRKFPGLVADG--RDMGTT-----VFPDAFLKIFLTADIKQRTKRRYK 1010 (1619)
Q Consensus 939 ~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~-~a~~~~~V~~G--Rd~~~~-----v~p~a~~kifl~A~~e~Ra~Rr~~ 1010 (1619)
. ..+...+.+.++. ++..+++|++| |+..+. .++..++.|||+||++++.+|...
T Consensus 70 ~-----------------~~~~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~ 132 (196)
T 2c95_A 70 L-----------------ETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLK 132 (196)
T ss_dssp H-----------------HHHHHHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHH
T ss_pred H-----------------HHHHHHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHc
Confidence 1 1122223333333 34557899998 432211 135567999999999999999543
Q ss_pred HHHh-cCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhhh
Q psy14505 1011 QLMQ-KGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLF 1074 (1619)
Q Consensus 1011 ~l~~-~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ll 1074 (1619)
+-.. .....+.+.+.+.+..-...... ....|..++..++||++ .+++++++.|.+.+...+
T Consensus 133 R~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~Id~~-~~~e~v~~~i~~~l~~~~ 195 (196)
T 2c95_A 133 RGETSGRVDDNEETIKKRLETYYKATEP-VIAFYEKRGIVRKVNAE-GSVDSVFSQVCTHLDALL 195 (196)
T ss_dssp HHTSSSCGGGSHHHHHHHHHHHHHHTHH-HHHHHHHHTCEEEEECC-SCHHHHHHHHHHHHHHHC
T ss_pred cCCcCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHhcCcEEEEECC-CCHHHHHHHHHHHHHHhc
Confidence 3110 01112344444443321111100 00001222223679987 799999999988776554
No 84
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=98.50 E-value=6.4e-08 Score=112.98 Aligned_cols=176 Identities=14% Similarity=0.131 Sum_probs=105.9
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhC-----CEEechhhHHHH-HHHHH------HHc---CCCCC-----cHHHHHHHH
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLG-----FHYLDSGALYRL-VTLSA------INN---NIQLD-----NELELVILI 918 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~-----~~~~dtg~~yr~-~~~~a------~~~---~~~~~-----~~~~~~~~~ 918 (1619)
..+|.++|+.|+||+|+++.|++.+| ++++|++.+||. .+... .+. +++.. +.+.+.+.+
T Consensus 5 ~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~~l 84 (290)
T 1a7j_A 5 HPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELERVF 84 (290)
T ss_dssp SCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHHHH
Confidence 35799999999999999999999988 899999999983 44321 122 23321 122222222
Q ss_pred Hcc----cceecCceEEeCCccccccccccccccccccccccHHHHHHHHHHHHhh-hcCCCeEEeccccC-----eeee
Q psy14505 919 KKL----NYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKF-RKFPGLVADGRDMG-----TTVF 988 (1619)
Q Consensus 919 ~~~----~~~~~~~~~~~~~~~v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~-a~~~~~V~~GRd~~-----~~v~ 988 (1619)
... .+.. ..|..+.+ +.+... ..+..+.. ++++ .....+|+||.+.+ ..+.
T Consensus 85 ~~l~~~~~i~~---~~~~~~~~--e~~~~~----------~~~~~~~~----~~~~~~~~~vvIvEG~~~~~~~~~~~v~ 145 (290)
T 1a7j_A 85 REYGETGQGRT---RTYVHDDA--EAARTG----------VAPGNFTD----WRDFDSDSHLLFYEGLHGAVVNSEVNIA 145 (290)
T ss_dssp HHHHHHSCCEE---CCCC--------CCSS----------CCTTSCCC----CEECCSSCSEEEEEESCTTCBCSSCBCG
T ss_pred HHHHcCCcccc---eeeccccc--cccccC----------CCCCcccc----ccccCCCCCEEEEEecccccccchHhHH
Confidence 211 0110 00100000 000000 00000000 0122 23457999999876 3567
Q ss_pred cCCCeEEEEEcCHHHHHHhchHH-HHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCc----e-EEccCc
Q psy14505 989 PDAFLKIFLTADIKQRTKRRYKQ-LMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQA----H-LLNTSK 1056 (1619)
Q Consensus 989 p~a~~kifl~A~~e~Ra~Rr~~~-l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~da----l-~Idts~ 1056 (1619)
+.++++|||+|+.+.|.+||..+ +..+| .+.+++.+.+.+| ..|..|.+.|+....|+ + +||||+
T Consensus 146 ~~~D~~IfV~a~~~~rl~Rrl~Rd~~~RG--~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns~ 216 (290)
T 1a7j_A 146 GLADLKIGVVPVINLEWIQKIHRDRATRG--YTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTSN 216 (290)
T ss_dssp GGCSEEEEEEECHHHHHHHHHHHTSSSCC--SCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCSC
T ss_pred HhCCEEEEEECCHHHHHHHHhhhhhhhcC--CChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCCC
Confidence 88899999999999999998765 22234 5888899999888 77777888898888887 3 789885
No 85
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.48 E-value=2.1e-07 Score=102.46 Aligned_cols=76 Identities=14% Similarity=0.118 Sum_probs=68.2
Q ss_pred ccccceeEEEEEEEEcCCeEEEEEc--------CCEEEEEeccccCccccCC--CccccccCCCEEEEEEEEeecccceE
Q psy14505 1338 RYPRGTRLLGKVTNLTDYGAFVEIE--------KGIEGLVHISEMDWINKNV--TPSKIVQLNDTVEIMILEINEERRRI 1407 (1619)
Q Consensus 1338 ~l~~G~iv~g~V~~v~~~G~fV~l~--------~gv~GlV~~sels~~~~~~--~~~~~~~vG~~V~vrVl~id~e~~ri 1407 (1619)
.+++|++|.|+|+++.++|+||++. .+++|++|+++++| .... ++.+.|++||.|+|+|++++.+++++
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~-~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRA-TEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGT-CSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHccc-ccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 5889999999999999999999984 47899999999987 3445 78999999999999999999777799
Q ss_pred EEeeecc
Q psy14505 1408 SLGMKQC 1414 (1619)
Q Consensus 1408 ~LSlK~~ 1414 (1619)
.||+|..
T Consensus 157 ~LS~k~~ 163 (209)
T 2nn6_I 157 LLTTAEN 163 (209)
T ss_dssp EEECCSS
T ss_pred EEEEecC
Confidence 9999974
No 86
>2nn6_I 3'-5' exoribonuclease CSL4 homolog; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2
Probab=98.48 E-value=1.6e-07 Score=103.33 Aligned_cols=76 Identities=18% Similarity=0.234 Sum_probs=68.0
Q ss_pred ccccceEEEEEEEEEecceEEEeeC--------CCeEEEEeCCCCCCCCCcc--ccccCCCCCCEEEEEEEEeecCCCeE
Q psy14505 1425 IHKKGEKIKGIIKSITDFGIFIGLD--------GNIDGLIHLSDLSWTDPGE--EIIRNFKKGDEIEAIILSIDVEKERI 1494 (1619)
Q Consensus 1425 ~~~vG~~v~G~V~~i~~~GvfV~~~--------~~v~Glv~~sels~~~~~~--~~~~~f~vGq~V~~~Vl~vd~e~~ri 1494 (1619)
.+++|++|.|+|++++++|+||++. .+..|++|++++++ .+.. ++.+.|++||.|.|+|++++.+++++
T Consensus 78 ~p~vGDvV~G~V~~v~~~~a~V~I~~v~~~~L~~~~~GlIhisei~~-~~~~~~~~~~~l~~GD~V~akVisi~~~~~~i 156 (209)
T 2nn6_I 78 LPDVGAIVTCKVSSINSRFAKVHILYVGSMPLKNSFRGTIRKEDVRA-TEKDKVEIYKSFRPGDIVLAKVISLGDAQSNY 156 (209)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEEEEESSSSCCCCSSCSCEEEEGGGT-CSSCCCCGGGTCCSSSEEEEEEEEEETTTTEE
T ss_pred CCCCCCEEEEEEEEEECceEEEEECccccccccCCceeEEEHHHccc-ccccccchhhhcCCCCEEEEEEEEEeCCCCeE
Confidence 3478999999999999999999974 57899999999996 5555 88999999999999999999877899
Q ss_pred EEeeecC
Q psy14505 1495 SLGIKQL 1501 (1619)
Q Consensus 1495 ~LSlK~~ 1501 (1619)
.||+|..
T Consensus 157 ~LS~k~~ 163 (209)
T 2nn6_I 157 LLTTAEN 163 (209)
T ss_dssp EEECCSS
T ss_pred EEEEecC
Confidence 9999984
No 87
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=98.48 E-value=8.4e-08 Score=105.81 Aligned_cols=191 Identities=18% Similarity=0.145 Sum_probs=107.6
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
++|.+.|+.|+||+|.++.+++ +|++++|++.+++.... .+ ....+.+.+......+. -+|.-...
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~~~~----~~--~~~~~~i~~~~g~~~~~-------~~g~~~r~ 67 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHSFYR----KG--HPVYEEVVKTFGKGILD-------EEGNIDRK 67 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHGGGS----SS--SHHHHHHHHHHCTTTTE-------ETTEECHH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHHHhc----CC--HHHHHHHHHHhCHHhhC-------CCCcCCHH
Confidence 4688889999999999999999 99999999999884321 10 00011111111000000 00110000
Q ss_pred cccc-----cccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCe-eeecCCCeEEEEEcCHHHHHHhchHHHH
Q psy14505 940 LIRN-----EKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGT-TVFPDAFLKIFLTADIKQRTKRRYKQLM 1013 (1619)
Q Consensus 940 ~ir~-----~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~-~v~p~a~~kifl~A~~e~Ra~Rr~~~l~ 1013 (1619)
.++. +......+.+ ..|.++..+.+.+......+.+|++|+.... .+.+..++.|||+||+++|.+|+..
T Consensus 68 ~l~~~~f~~~~~~~~l~~l-~~~~v~~~~~~~~~~~~~~~~vive~~~l~~~~~~~~~~~~i~l~~~~e~~~~Rl~~--- 143 (204)
T 2if2_A 68 KLADIVFKDEEKLRKLEEI-THRALYKEIEKITKNLSEDTLFILEASLLVEKGTYKNYDKLIVVYAPYEVCKERAIK--- 143 (204)
T ss_dssp HHHHTTSSCHHHHHHHHHH-HHHHHTTTHHHHHHHSCTTCCEEEECSCSTTTTCGGGSSEEEEECCCHHHHHHHHHH---
T ss_pred HHHHHHhCCHHHHHHHHHh-hCHHHHHHHHHHHHhccCCCEEEEEccccccCCchhhCCEEEEEECCHHHHHHHHHH---
Confidence 0100 0000001111 3455555555544443332679999986432 2334467999999999999999542
Q ss_pred hcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhhhhhhcc
Q psy14505 1014 QKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLFKESLL 1079 (1619)
Q Consensus 1014 ~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ll~e~l~ 1079 (1619)
+ +.+.+++.+.+..+... .++....| ++||++ .+++++++.|.+.+..+....++
T Consensus 144 -R--~~~~~~~~~~~~~~~~~------~~~~~~ad-~vId~~-~~~~~~~~~i~~~l~~~~~~~~~ 198 (204)
T 2if2_A 144 -R--GMSEEDFERRWKKQMPI------EEKVKYAD-YVIDNS-GSIEETYKQVKKVYEELTRDPLE 198 (204)
T ss_dssp -T--CCCHHHHHHHHTTSCCH------HHHGGGCS-EECCCS-SCHHHHHHHHHHHHHTTCC----
T ss_pred -c--CCCHHHHHHHHHhCCCh------hHHHhcCC-EEEECC-CCHHHHHHHHHHHHHHHhcChhh
Confidence 2 35777777766654321 11222223 789998 69999999998888776655443
No 88
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.47 E-value=3.6e-08 Score=115.20 Aligned_cols=130 Identities=14% Similarity=0.136 Sum_probs=92.9
Q ss_pred CCCCCCCeEEEEEEEEecCCCeEEeecchhhhhhh-hHHHHHHHhccC--CCcEEEEEEEEEecCeEEEEeCCEEEEeec
Q psy14505 1209 TTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESM-GEERQKLIETLK--EGCTVKGVVKNITDYGAFIDLGGIDGLLHI 1285 (1619)
Q Consensus 1209 ~~~~vG~~v~~~Vl~vd~~~~~i~LS~k~~~~~~~-~~~~~~~~~~l~--~G~iv~g~V~~v~~~G~~V~l~gi~g~l~~ 1285 (1619)
+...+|+.+++.|...+..+ ....+.|+.+.+.. .......++.++ .|++++|+|.++.++|++|++|+.+|+||.
T Consensus 85 ~~~~vGd~ie~~I~~~dfgR-~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlGk~EgiLp~ 163 (344)
T 1hh2_P 85 PLAEVGSIVKKELNVKNFGR-IAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIGKLETRLPK 163 (344)
T ss_dssp TTCCTTCEEEEECCCCCSSS-CSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEETTEEEEEEG
T ss_pred ccccCCCEEEEEEccccCcc-HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeCCeEEEEeH
Confidence 44569999999997776543 34444455543332 222233356665 899999999999999999999999999999
Q ss_pred cccCccccCCCccccccCCEEEEEEEEeecCCC--eEEEeeeccc-cCCccccccccccceeEEEEE
Q psy14505 1286 TDIAWRRVKHPSEILTIGQDISTKILKYDQEKN--RVSLGMKQLG-IDPWIGLSFRYPRGTRLLGKV 1349 (1619)
Q Consensus 1286 sels~~~~~~~~~~~~vG~~v~vrVl~vd~~~~--~i~LSlK~~~-~~~~~~~~~~l~~G~iv~g~V 1349 (1619)
++++ |.+.|++|++++|.|+.++++++ ++.||.+... ...|. .+.+.++..|.|
T Consensus 164 sE~i------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt~p~~lk~Lf----elEVPEI~dG~V 220 (344)
T 1hh2_P 164 KEWI------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRRVPEFVIGLM----KLEIPEVENGIV 220 (344)
T ss_dssp GGSC------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESSSHHHHHHHH----HHHCHHHHHSSE
T ss_pred HHcC------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEeeccHHHHHHH----HhhcccceeeeE
Confidence 9997 56679999999999999997765 6777775431 12222 355555555544
No 89
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.45 E-value=3.1e-07 Score=89.31 Aligned_cols=83 Identities=41% Similarity=0.711 Sum_probs=65.2
Q ss_pred cccceeEEEEEEEE---cCCeEEEEEcC-CEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeecc
Q psy14505 1339 YPRGTRLLGKVTNL---TDYGAFVEIEK-GIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQC 1414 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v---~~~G~fV~l~~-gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~ 1414 (1619)
..+++.++|+|+.. ..|| |+.-.+ +.++|+|.+.+.|.. +
T Consensus 11 ~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~--------~--------------------------- 54 (101)
T 2bh8_A 11 RLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGA--------A--------------------------- 54 (101)
T ss_dssp -----CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSS--------C---------------------------
T ss_pred ccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCC--------c---------------------------
Confidence 45678899999987 5678 777654 599999999998721 0
Q ss_pred cCCCCcccccccccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCC
Q psy14505 1415 KDNPWENFSIIHKKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWT 1464 (1619)
Q Consensus 1415 ~~~~~~~~~~~~~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~ 1464 (1619)
....+++|+.|.|.|.++++||+||++.++++||||.|+++|.
T Consensus 55 -------~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~~ 97 (101)
T 2bh8_A 55 -------VRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISWA 97 (101)
T ss_dssp -------CCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEEC
T ss_pred -------cccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCccC
Confidence 1123478999999999999999999999999999999999973
No 90
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.42 E-value=3.6e-07 Score=100.77 Aligned_cols=77 Identities=16% Similarity=0.083 Sum_probs=63.1
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccc----------cCCCCCCEEEEEEEEeecCCC---e
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEII----------RNFKKGDEIEAIILSIDVEKE---R 1493 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~----------~~f~vGq~V~~~Vl~vd~e~~---r 1493 (1619)
.+|+++.|+|+++++||+||++.+ ++||||.+++++ .+..++. +.|++||.|+++|+++|.+.+ +
T Consensus 82 ~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d-~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~~ 159 (215)
T 2b8k_G 82 FKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQ-DLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 159 (215)
T ss_dssp CTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCS-SCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEEE
T ss_pred CCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCc-cceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccEE
Confidence 579999999999999999999987 999999999973 3332222 569999999999999999875 6
Q ss_pred EEEeeecCcCCCc
Q psy14505 1494 ISLGIKQLEGDPF 1506 (1619)
Q Consensus 1494 i~LSlK~~~~~p~ 1506 (1619)
+. |||+....|+
T Consensus 160 Ig-Smk~~~LG~~ 171 (215)
T 2b8k_G 160 IG-SIKEDYLGAI 171 (215)
T ss_dssp EE-ECCSTTCEEC
T ss_pred EE-EcCCCCCCCc
Confidence 66 8887544444
No 91
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.41 E-value=6.1e-07 Score=96.64 Aligned_cols=69 Identities=23% Similarity=0.323 Sum_probs=63.5
Q ss_pred cccceeEEEEEEEEcCCeEEEEEcC----------CEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEE
Q psy14505 1339 YPRGTRLLGKVTNLTDYGAFVEIEK----------GIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRIS 1408 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~~G~fV~l~~----------gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~ 1408 (1619)
.+ |++|.|+|+++.++|+||++.. +.+|++|+++++| ....++.+.|++||.|.|+|++ +++.
T Consensus 56 p~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~-~~~~~~~~~~~~GD~V~akVi~-----~~i~ 128 (179)
T 3m7n_A 56 VK-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDE-GYVKEISEAVGYLDILKARVIG-----DNLR 128 (179)
T ss_dssp CT-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTS-SCCSSGGGTCCTTCEEEEEEEE-----TTTE
T ss_pred CC-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCc-chhhCHhhcCCCCCEEEEEEEC-----CeEE
Confidence 57 9999999999999999999987 8999999999998 4567899999999999999997 7899
Q ss_pred Eeeecc
Q psy14505 1409 LGMKQC 1414 (1619)
Q Consensus 1409 LSlK~~ 1414 (1619)
||+|..
T Consensus 129 LS~k~~ 134 (179)
T 3m7n_A 129 LSTKEE 134 (179)
T ss_dssp EECCST
T ss_pred EEEecC
Confidence 999864
No 92
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.39 E-value=2.2e-07 Score=100.90 Aligned_cols=169 Identities=16% Similarity=0.157 Sum_probs=92.9
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhC-----CEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCC
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLG-----FHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNG 934 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~-----~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1619)
++|.+.|++|+||+|.++.|++++| ++++|+|.++|.++. +.|.... ..+
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~---~~~~~~~-~~~--------------------- 58 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK---EENLVSD-RDQ--------------------- 58 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHH---HTTSCSS-GGG---------------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHh---ccCCCCC-HHH---------------------
Confidence 4688899999999999999999999 999999999986543 4443111 000
Q ss_pred ccccccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEecccc-----Ce------eeec--CCCeEEEEEcCH
Q psy14505 935 VNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDM-----GT------TVFP--DAFLKIFLTADI 1001 (1619)
Q Consensus 935 ~~v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~-----~~------~v~p--~a~~kifl~A~~ 1001 (1619)
+.. . . .+....+...+.+.++.+...+++|++|+.+ +. .++. ..++.|||+||+
T Consensus 59 ------~~~-----~-~-~~~~~~~~~~~~~~i~~~~~~~~viid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~ 125 (192)
T 1kht_A 59 ------MRK-----M-D-PETQKRIQKMAGRKIAEMAKESPVAVDTHSTVSTPKGYLPGLPSWVLNELNPDLIIVVETTG 125 (192)
T ss_dssp ------GSS-----C-C-HHHHHHHHHHHHHHHHHHHTTSCEEEECCSEEEETTEEEESSCHHHHHHHCCSEEEEEECCH
T ss_pred ------Hhc-----C-C-HHHHHHHHHHHHHHHHhhccCCeEEEccceeccccccccccCcHHHHhccCCCEEEEEeCCH
Confidence 000 0 0 0011122222333344555667899999843 21 1222 246899999999
Q ss_pred HHHHHhchHHHHhcC-CCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhh
Q psy14505 1002 KQRTKRRYKQLMQKG-FSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCF 1070 (1619)
Q Consensus 1002 e~Ra~Rr~~~l~~~~-~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i 1070 (1619)
+++.+||..+.. ++ ...+.+++......+......+. .|.. ...++|+....+++++++.|.+.+
T Consensus 126 ~~~~~rRl~~~~-R~r~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~i~~~~~~~e~~~~~i~~~i 191 (192)
T 1kht_A 126 DEILMRRMSDET-RVRDLDTASTIEQHQFMNRCAAMSYG--VLTG-ATVKIVQNRNGLLDQAVEELTNVL 191 (192)
T ss_dssp HHHHHHHHTSSS-CSSSCCCHHHHHHHHHHHHHHHHHHH--HHHC-CEEEEEECCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhhhcc-cCCCcCCHHHHHHHHHHHHHHHHHHH--HhcC-CcEEEEeCCCCCHHHHHHHHHHHh
Confidence 999975442200 22 22344443322221111111100 0101 123455444345999999987654
No 93
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=98.39 E-value=3.4e-07 Score=102.12 Aligned_cols=186 Identities=15% Similarity=0.164 Sum_probs=101.1
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
++|.+.|+.||||+|.++.|++ +|++++|++.+++.+. +.|- ....++.+......+ .. +|. +..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~D~~~~~~~----~~~~--~~~~~i~~~~g~~~~--~~-----~~~-~~~ 69 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDADIIARQVV----EPGA--PALHAIADHFGANMI--AA-----DGT-LQR 69 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHTT----STTC--THHHHHHHHHCGGGB--CT-----TSC-BCH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEccHHHHHHh----cCCh--HHHHHHHHHhHHHHc--CC-----CCC-CCH
Confidence 5789999999999999999998 9999999999998432 1221 111122111100000 00 000 000
Q ss_pred -cccccccccc--cc--cccccHHHHHHHHHHHHhhhcCCCeEE-eccccC-eeeecCCCeEEEEEcCHHHHHHhchHHH
Q psy14505 940 -LIRNEKVSNN--AS--KIAKFKNIRKELFKIQVKFRKFPGLVA-DGRDMG-TTVFPDAFLKIFLTADIKQRTKRRYKQL 1012 (1619)
Q Consensus 940 -~ir~~~~~~~--~s--~~a~~~~vr~~~~~~~r~~a~~~~~V~-~GRd~~-~~v~p~a~~kifl~A~~e~Ra~Rr~~~l 1012 (1619)
.++....... .. .-...|.++..+...+... .+++++ ++..+- .-+.+..++.|||+||+++|.+|...+
T Consensus 70 ~~l~~~~f~~~~~~~~l~~~~~p~v~~~~~~~~~~~--~~~~vi~~~~~l~~~~~~~~~d~vi~l~~~~e~~~~Rl~~R- 146 (218)
T 1vht_A 70 RALRERIFANPEEKNWLNALLHPLIQQETQHQIQQA--TSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQR- 146 (218)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHC--CSSEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHHHH-
T ss_pred HHHHHHHhCCHHHHHHHHHhHCHHHHHHHHHHHHhc--CCCEEEEEeeeeeccCccccCCEEEEEECCHHHHHHHHHHc-
Confidence 0110000000 00 0013455554444333322 334454 442111 013445679999999999999994432
Q ss_pred HhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhhhh
Q psy14505 1013 MQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLFK 1075 (1619)
Q Consensus 1013 ~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ll~ 1075 (1619)
.+.+.+++.+.+..|..... .+..+ .++||++. +++++++.|.+.+..++.
T Consensus 147 ----~~~~~~~~~~~~~~~~~~~~-----~~~~a--d~vId~~~-~~~~~~~~I~~~l~~~~~ 197 (218)
T 1vht_A 147 ----DDVTREHVEQILAAQATREA-----RLAVA--DDVIDNNG-APDAIASDVARLHAHYLQ 197 (218)
T ss_dssp ----HTCCHHHHHHHHHHSCCHHH-----HHHHC--SEEEECSS-CTTSHHHHHHHHHHHHHH
T ss_pred ----CCCCHHHHHHHHHhcCChHH-----HHHhC--CEEEECCC-CHHHHHHHHHHHHHHHHH
Confidence 23466776666555321110 01111 27899998 999999999988876654
No 94
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.39 E-value=5e-07 Score=96.85 Aligned_cols=71 Identities=17% Similarity=0.143 Sum_probs=57.8
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCcccc----------ccCCCCCCEEEEEEEEeecCCC---e
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEI----------IRNFKKGDEIEAIILSIDVEKE---R 1493 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~----------~~~f~vGq~V~~~Vl~vd~e~~---r 1493 (1619)
.+|+++.|+|+++++||+||++.+ ++||||.|++++ .+.-++ .+.|++||.|+++|+++|.+.+ +
T Consensus 82 ~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~-~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~~ 159 (171)
T 1y14_B 82 FKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQ-DLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 159 (171)
T ss_dssp CTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCT-TCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEEEE
T ss_pred CCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCC-CceECcccCceEEeccceEECCCCEEEEEEEEEEcCCCCcEE
Confidence 479999999999999999999988 999999999973 322111 2669999999999999998874 3
Q ss_pred EEEeeec
Q psy14505 1494 ISLGIKQ 1500 (1619)
Q Consensus 1494 i~LSlK~ 1500 (1619)
+. ||++
T Consensus 160 ig-sm~~ 165 (171)
T 1y14_B 160 IG-SIKE 165 (171)
T ss_dssp EE-ECCS
T ss_pred EE-EcCC
Confidence 33 5554
No 95
>2b8k_G B16, DNA-directed RNA polymerase II 19 kDa polypeptide; DNA-dependent RNA polymerase, cellular RNA polymerase; 4.15A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1
Probab=98.39 E-value=5e-07 Score=99.64 Aligned_cols=79 Identities=13% Similarity=0.135 Sum_probs=63.5
Q ss_pred cccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCc----------cccccCCCEEEEEEEEeecccc---
Q psy14505 1339 YPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTP----------SKIVQLNDTVEIMILEINEERR--- 1405 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~----------~~~~~vG~~V~vrVl~id~e~~--- 1405 (1619)
.++|++++|+|++++++|+||++++ .+||||+|+|++ ....++ .+.+++||.|+++|+++|.+.+
T Consensus 81 p~vGev~~G~V~~vt~fG~FVelg~-~dGlVhiS~l~d-~~~~d~~~~~w~~~~~~~~~~~Gd~VrVkV~~vd~~~~~i~ 158 (215)
T 2b8k_G 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQ-DLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIH 158 (215)
T ss_dssp CCTTEEEEEEEEEEETTEEEEECTT-SEEEEEGGGSCS-SCCCBSSCSSCEEECSSCEEETTCEEEEEEEEEEEETTEEE
T ss_pred cCCCCEEEEEEEEEecceEEEEecC-cEEEEEHHHCCc-cceeccccccceeeccccEECCCCEEEEEEEEEEcCCCccE
Confidence 4799999999999999999999987 999999999974 212222 2679999999999999998774
Q ss_pred eEEEeeecccCCCCc
Q psy14505 1406 RISLGMKQCKDNPWE 1420 (1619)
Q Consensus 1406 ri~LSlK~~~~~~~~ 1420 (1619)
++. |+|+....+|.
T Consensus 159 ~Ig-Smk~~~LG~~~ 172 (215)
T 2b8k_G 159 AIG-SIKEDYLGAIS 172 (215)
T ss_dssp EEE-ECCSTTCEEC-
T ss_pred EEE-EcCCCCCCCcc
Confidence 666 88875554443
No 96
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.37 E-value=3.7e-07 Score=98.89 Aligned_cols=165 Identities=16% Similarity=0.087 Sum_probs=93.1
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
..|.+.|++|+||+|+++.||+++|++++|++.+.+. ..|.+.. ++.+.
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d~~~~~------~~g~~~~---~~~~~---------------------- 54 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRILYDSDKEIEK------RTGADIA---WIFEM---------------------- 54 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH------HHTSCHH---HHHHH----------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCEEEChHHHHH------HcCCChh---hHHHH----------------------
Confidence 3577789999999999999999999999999888662 2233211 11000
Q ss_pred cccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeeec-------CCCeEEEEEcCHHHHHHhchHHH
Q psy14505 940 LIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFP-------DAFLKIFLTADIKQRTKRRYKQL 1012 (1619)
Q Consensus 940 ~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~p-------~a~~kifl~A~~e~Ra~Rr~~~l 1012 (1619)
......+....++..+++...++|+... .|.++.+ ...+.|||+||++++.+|...+-
T Consensus 55 --------------~g~~~~~~~~~~~~~~~~~~~~~vi~~g-g~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~ 119 (185)
T 3trf_A 55 --------------EGEAGFRRREREMIEALCKLDNIILATG-GGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKG 119 (185)
T ss_dssp --------------HHHHHHHHHHHHHHHHHHHSSSCEEECC-TTGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCT
T ss_pred --------------hCHHHHHHHHHHHHHHHHhcCCcEEecC-CceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcC
Confidence 0001233444444555655555555432 1333322 12378999999999999931000
Q ss_pred HhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhhhh
Q psy14505 1013 MQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLFK 1075 (1619)
Q Consensus 1013 ~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ll~ 1075 (1619)
...+...+.++..+.+++....+.... .....++|||+.++++++++.|++.+...+.
T Consensus 120 ~~~rp~~~~~~~~~~l~~~~~~r~~~y-----~~~ad~~Idt~~~~~~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 120 EMRRPLFIKNNSKEKLQQLNEIRKPLY-----QAMADLVYPTDDLNPRQLATQILVDIKQTYS 177 (185)
T ss_dssp TCSSCCCCCHHHHHHHHHHHHHHHHHH-----HHHCSEEEECTTCCHHHHHHHHHHHSCC---
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHH-----hhcCCEEEECCCCCHHHHHHHHHHHHHHHhh
Confidence 011111222323333333222222111 1112489999999999999999988776553
No 97
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.36 E-value=1.8e-06 Score=94.97 Aligned_cols=178 Identities=14% Similarity=0.165 Sum_probs=100.3
Q ss_pred cccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccc
Q psy14505 858 YIPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNV 937 (1619)
Q Consensus 858 ~~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 937 (1619)
...+|.+.|..|+||+|.++.|++++|++++|+|.++|.... ..|-.. .+.+.+.+. +|+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~~---~~~~~~--~~~i~~~~~-------------~g~~~ 75 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQG---RAGSQY--GELIKNCIK-------------EGQIV 75 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHHH---STTCSC--HHHHHHHHH-------------TTCCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHHh---ccCCHH--HHHHHHHHH-------------cCCcC
Confidence 456789999999999999999999999999999999984321 223211 122222211 11111
Q ss_pred cccccccccccccccccccHHHHHHHHHHHHhhhcC-CCeEEeccccCee-------eecCCCeEEEEEcCHHHHHHhch
Q psy14505 938 TTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKF-PGLVADGRDMGTT-------VFPDAFLKIFLTADIKQRTKRRY 1009 (1619)
Q Consensus 938 ~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~-~~~V~~GRd~~~~-------v~p~a~~kifl~A~~e~Ra~Rr~ 1009 (1619)
..+ ...+.+++.+. ..++.. .++|++|...+.- .++..++.|||+||++++.+|..
T Consensus 76 ~~~-------------~~~~~l~~~i~---~~l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~ 139 (203)
T 1ukz_A 76 PQE-------------ITLALLRNAIS---DNVKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLL 139 (203)
T ss_dssp CHH-------------HHHHHHHHHHH---HHHHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHH
T ss_pred CHH-------------HHHHHHHHHHH---hhhccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH
Confidence 000 01222333221 233343 4789998521110 23446799999999999999966
Q ss_pred HHHHhcC-CCCCHHHHHHHHHhhhhhcccCCC-CCCCCCCCceEEccCcccchhhhhhhhhhhhh
Q psy14505 1010 KQLMQKG-FSVSMSDLLINLIKRDIRDKTRNL-SPLKCPEQAHLLNTSKMNINQVVNQILDCFAT 1072 (1619)
Q Consensus 1010 ~~l~~~~-~~~~~~~~~~~i~~rD~~d~~r~~-~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ 1072 (1619)
.+-...+ ...+.+.+.+.+.. ........ ..|..++..++||++ .+++++.+.|.+.+..
T Consensus 140 ~R~~~~~~~~~~~e~~~~r~~~--~~~~~~~~~~~~~~~~~vi~id~~-~~~e~v~~~i~~~l~~ 201 (203)
T 1ukz_A 140 ERGKTSGRSDDNIESIKKRFNT--FKETSMPVIEYFETKSKVVRVRCD-RSVEDVYKDVQDAIRD 201 (203)
T ss_dssp HHHHHHCCTTCSHHHHHHHHHH--HHHTTHHHHHHHHTTTCEEEEECS-SCHHHHHHHHHHHHHH
T ss_pred hccccCCCCCCCHHHHHHHHHH--HHHhhHHHHHHHHhcCcEEEEECC-CCHHHHHHHHHHHHhc
Confidence 5522222 12245554443221 01100000 001223345678998 7999999999877654
No 98
>1y14_B B16, RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transferase; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.230.1.1 PDB: 1nt9_G 1wcm_G 1pqv_G 1y1v_G 1y1w_G 1y1y_G 1y77_G* 2b63_G* 2ja5_G* 2ja6_G* 2ja7_G* 2ja8_G* 2r7z_G 2r92_G 2r93_G 2vum_G* 3fki_G 3h3v_H 3hou_G* 3hov_G* ...
Probab=98.36 E-value=7.8e-07 Score=95.31 Aligned_cols=73 Identities=15% Similarity=0.189 Sum_probs=57.2
Q ss_pred cccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCcccc---CCCc------cccccCCCEEEEEEEEeecccc---e
Q psy14505 1339 YPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINK---NVTP------SKIVQLNDTVEIMILEINEERR---R 1406 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~---~~~~------~~~~~vG~~V~vrVl~id~e~~---r 1406 (1619)
..+|++++|+|++++++|+||++++ .+||||.|+|++... ..++ .+.+++||.|+++|+++|.+.+ +
T Consensus 81 ~~~Gev~~G~V~~v~~fG~FV~l~~-~dglvhis~l~~~~~~d~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~~~ 159 (171)
T 1y14_B 81 PFKGEVVDGTVVSCSQHGFEVQVGP-MKVFVTKHLMPQDLTFNAGSNPPSYQSSEDVITIKSRIRVKIEGCISQVSSIHA 159 (171)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEETT-EEEEEEGGGSCTTCEECC-----CEECSSCEECTTCEEEEEEEEEEEETTEEEE
T ss_pred CCCCCEEEEEEEEEecCEEEEEecC-eEEEEEHHHCCCCceECcccCceEEeccceEECCCCEEEEEEEEEEcCCCCcEE
Confidence 4589999999999999999999987 999999999964211 1111 2679999999999999998764 3
Q ss_pred EEEeeec
Q psy14505 1407 ISLGMKQ 1413 (1619)
Q Consensus 1407 i~LSlK~ 1413 (1619)
+. |+++
T Consensus 160 ig-sm~~ 165 (171)
T 1y14_B 160 IG-SIKE 165 (171)
T ss_dssp EE-ECCS
T ss_pred EE-EcCC
Confidence 33 5554
No 99
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=98.35 E-value=5.9e-07 Score=98.63 Aligned_cols=177 Identities=18% Similarity=0.159 Sum_probs=98.6
Q ss_pred cccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccc
Q psy14505 858 YIPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNV 937 (1619)
Q Consensus 858 ~~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 937 (1619)
...+|.+.|+.||||+|+++.|++. |++|||++.+++... .|.+ ..+.+..+ .++.+|. +
T Consensus 7 ~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~~-----~~~~----~~i~~~~~---------~~~~~g~-i 66 (203)
T 1uf9_A 7 HPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARAR-----ENKE----EELKRLFP---------EAVVGGR-L 66 (203)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHHH-----HHTH----HHHHHHCG---------GGEETTE-E
T ss_pred CceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHhc-----CChH----HHHHHHHH---------HHHhCCC-c
Confidence 3467999999999999999999998 999999999998543 1211 12211110 0111121 1
Q ss_pred ccc-ccccccccccccccccHHHHHHHH---------HHHHhhhcC-CC-eEEeccccC-eeeecCCCeEEEEEcCHHHH
Q psy14505 938 TTL-IRNEKVSNNASKIAKFKNIRKELF---------KIQVKFRKF-PG-LVADGRDMG-TTVFPDAFLKIFLTADIKQR 1004 (1619)
Q Consensus 938 ~~~-ir~~~~~~~~s~~a~~~~vr~~~~---------~~~r~~a~~-~~-~V~~GRd~~-~~v~p~a~~kifl~A~~e~R 1004 (1619)
... ++. .+...+..+..+. +.+.+.... ++ +|++|...- .-+.+..++.|||+||++.|
T Consensus 67 ~~~~l~~--------~~~~~~~~~~~l~~~~~~~i~~~~i~~~~~~g~~~vi~d~~~l~~~~~~~~~d~~i~l~~~~e~~ 138 (203)
T 1uf9_A 67 DRRALAR--------LVFSDPERLKALEAVVHPEVRRLLMEELSRLEAPLVFLEIPLLFEKGWEGRLHGTLLVAAPLEER 138 (203)
T ss_dssp CHHHHHH--------HHTTSHHHHHHHHHHHHHHHHHHHHHHHHTCCCSEEEEECTTTTTTTCGGGSSEEEEECCCHHHH
T ss_pred CHHHHHH--------HHhCCHHHHHHHHHHhChHHHHHHHHHhhhcCCCEEEEEecceeccCchhhCCEEEEEECCHHHH
Confidence 110 111 1111222222221 222222222 34 555554211 11123347999999999999
Q ss_pred HHhchHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhhhh
Q psy14505 1005 TKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLFK 1075 (1619)
Q Consensus 1005 a~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ll~ 1075 (1619)
.+|.. .+.+.+.+++.+.+..+-... ++....| ++||++. +++++++.|.+.+..++.
T Consensus 139 ~~R~~-----~R~~~~~~~~~~~i~~~~~~~------~~~~~ad-~vId~~~-~~~~~~~~i~~~~~~~~~ 196 (203)
T 1uf9_A 139 VRRVM-----ARSGLSREEVLARERAQMPEE------EKRKRAT-WVLENTG-SLEDLERALKAVLAELTG 196 (203)
T ss_dssp HHHHH-----TTTCCTTHHHHHHHTTSCCHH------HHHHHCS-EEECCSS-HHHHHHHHHHHHHHSCCC
T ss_pred HHHHH-----HcCCCCHHHHHHHHHHCCChh------HHHHhCC-EEEECCC-CHHHHHHHHHHHHHHHHh
Confidence 99933 333456677766665531110 1011122 7899998 999999999887765443
No 100
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=98.34 E-value=6.6e-08 Score=113.01 Aligned_cols=104 Identities=16% Similarity=0.167 Sum_probs=80.4
Q ss_pred cccCCEEEEEEEEeecCCCeEEEeeecccc-----CCccccccccc--cceeEEEEEEEEcCCeEEEEEcCCEEEEEecc
Q psy14505 1300 LTIGQDISTKILKYDQEKNRVSLGMKQLGI-----DPWIGLSFRYP--RGTRLLGKVTNLTDYGAFVEIEKGIEGLVHIS 1372 (1619)
Q Consensus 1300 ~~vG~~v~vrVl~vd~~~~~i~LSlK~~~~-----~~~~~~~~~l~--~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~s 1372 (1619)
+.+|+.+.+.|...|.. +....+.|+... ......++.++ +|++|+|+|.++.++|+||+++ +.+|++|.+
T Consensus 87 ~~vGd~ie~~I~~~dfg-R~aa~~aKqvi~qkireaere~i~~e~~~~~GeIV~G~V~ri~~~~v~VDlG-k~EgiLp~s 164 (344)
T 1hh2_P 87 AEVGSIVKKELNVKNFG-RIAAQTAKQVLIQRIRELEKEKQFEKYSELKGTVTTAEVIRVMGEWADIRIG-KLETRLPKK 164 (344)
T ss_dssp CCTTCEEEEECCCCCSS-SCSGGGHHHHHHHHHHHHTTCCSSCCTTCCTTCEEEEEEEEECSSEEEEEET-TEEEEEEGG
T ss_pred ccCCCEEEEEEccccCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCEEEEEEEEEecCcEEEEeC-CeEEEEeHH
Confidence 77999999999877753 444455555431 12223334454 8999999999999999999996 999999999
Q ss_pred ccCccccCCCccccccCCCEEEEEEEEeecccc--eEEEeee
Q psy14505 1373 EMDWINKNVTPSKIVQLNDTVEIMILEINEERR--RISLGMK 1412 (1619)
Q Consensus 1373 els~~~~~~~~~~~~~vG~~V~vrVl~id~e~~--ri~LSlK 1412 (1619)
+++ |.+.|++||+|+|.|+.++.+.+ ++.||.+
T Consensus 165 E~i-------p~E~~~vGD~Vkv~V~~V~~~~kg~~I~LSRt 199 (344)
T 1hh2_P 165 EWI-------PGEEIKAGDLVKVYIIDVVKTTKGPKILVSRR 199 (344)
T ss_dssp GSC-------TTCCCCTTCEEEEEEEEEEEETTEEEEEEESS
T ss_pred HcC-------CCcCCCCCCEEEEEEEEEEcCCCCcEEEEEee
Confidence 985 56789999999999999997765 5555554
No 101
>3m7n_A Putative uncharacterized protein AF_0206; exosome, RNA, exonuclease, hydrolase, nuclease, hydrolase-RN; 2.40A {Archaeoglobus fulgidus} PDB: 2ba1_A 3m85_A
Probab=98.34 E-value=6.4e-07 Score=96.47 Aligned_cols=68 Identities=19% Similarity=0.266 Sum_probs=63.3
Q ss_pred ccceEEEEEEEEEecceEEEeeCC----------CeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEE
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDG----------NIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISL 1496 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~----------~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~L 1496 (1619)
+ |++|.|.|++++++|+||++.. +..|++|.++++| .+..++.+.|++||.|.|+|++ +++.|
T Consensus 57 ~-GdiV~G~V~~V~~~ga~V~I~~v~~~~~~~~~~~~Gll~isei~~-~~~~~~~~~~~~GD~V~akVi~-----~~i~L 129 (179)
T 3m7n_A 57 K-GDVVLGRVVDLRNSIALIEVSSKKGENRGPSNRGIGILHVSNVDE-GYVKEISEAVGYLDILKARVIG-----DNLRL 129 (179)
T ss_dssp T-TCEEEEEEEEECSSEEEEEEEEETTCCSCCTTCEEEEEEGGGTTS-SCCSSGGGTCCTTCEEEEEEEE-----TTTEE
T ss_pred C-CCEEEEEEEEEeCCcEEEEEccccCcccccccCeeEEEEHHHcCc-chhhCHhhcCCCCCEEEEEEEC-----CeEEE
Confidence 6 9999999999999999999987 8999999999996 5667999999999999999997 89999
Q ss_pred eeecC
Q psy14505 1497 GIKQL 1501 (1619)
Q Consensus 1497 SlK~~ 1501 (1619)
|+|..
T Consensus 130 S~k~~ 134 (179)
T 3m7n_A 130 STKEE 134 (179)
T ss_dssp ECCST
T ss_pred EEecC
Confidence 99874
No 102
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.34 E-value=1.9e-06 Score=94.64 Aligned_cols=164 Identities=15% Similarity=0.114 Sum_probs=98.6
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
..|.+.|++|+||+|.++.|++++|++++|++.+.+. ..|.+. ..+ ..
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~------~~g~~i---~~~---~~-------------------- 73 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEE------RFHKTV---GEL---FT-------------------- 73 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH------HHTSCH---HHH---HH--------------------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHH------HhCCcH---HHH---HH--------------------
Confidence 4678889999999999999999999999999887652 123221 110 00
Q ss_pred cccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeeec-------CCCeEEEEEcCHHHHHHhchHHH
Q psy14505 940 LIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFP-------DAFLKIFLTADIKQRTKRRYKQL 1012 (1619)
Q Consensus 940 ~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~p-------~a~~kifl~A~~e~Ra~Rr~~~l 1012 (1619)
-...+..|....++.+++....++|+..- .|.+..+ ..++.|||++|++++.+|...+-
T Consensus 74 -------------~~~~~~~~~~e~~~l~~l~~~~~~vi~~g-gg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~ 139 (199)
T 3vaa_A 74 -------------ERGEAGFRELERNMLHEVAEFENVVISTG-GGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRRLRIAK 139 (199)
T ss_dssp -------------HHHHHHHHHHHHHHHHHHTTCSSEEEECC-TTGGGSTTHHHHHHHHSEEEEEECCHHHHHHHHHHTG
T ss_pred -------------hcChHHHHHHHHHHHHHHhhcCCcEEECC-CcEEccHHHHHHHHcCCEEEEEECCHHHHHHHHhcCC
Confidence 00112344455566667777778888721 1222222 24688999999999999943110
Q ss_pred HhcC--CCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhhhh
Q psy14505 1013 MQKG--FSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLFK 1075 (1619)
Q Consensus 1013 ~~~~--~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ll~ 1075 (1619)
..+. .+.+.+++.+.+.+.-..+... |.. -.++|||+.++++++++.|++.+...++
T Consensus 140 ~~Rp~~~~~~~~~~~~~i~~~~~~r~~~----y~~--ad~~Idt~~~s~ee~~~~I~~~l~~~l~ 198 (199)
T 3vaa_A 140 QQRPILQGKEDDELMDFIIQALEKRAPF----YTQ--AQYIFNADELEDRWQIESSVQRLQELLE 198 (199)
T ss_dssp GGCGGGTTCCHHHHHHHHHHHHHHHHHH----HTT--SSEEEECCCCSSHHHHHHHHHHHHHHTT
T ss_pred CCCCCcCCCChhhHHHHHHHHHHHHHHH----Hhh--CCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 1111 1234444333332211111111 111 2388999999999999999988776553
No 103
>4ayb_E DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2y0s_E 4b1o_E 4b1p_T 2waq_E 2wb1_E 2pmz_E 3hkz_E
Probab=98.33 E-value=8.7e-07 Score=95.85 Aligned_cols=77 Identities=25% Similarity=0.507 Sum_probs=66.4
Q ss_pred cCCCcEEEEEEEEEecCeEEEEeCCEEEEeeccccCcccc-----------CCCccccccCCEEEEEEEEeecCC----C
Q psy14505 1254 LKEGCTVKGVVKNITDYGAFIDLGGIDGLLHITDIAWRRV-----------KHPSEILTIGQDISTKILKYDQEK----N 1318 (1619)
Q Consensus 1254 l~~G~iv~g~V~~v~~~G~~V~l~gi~g~l~~sels~~~~-----------~~~~~~~~vG~~v~vrVl~vd~~~----~ 1318 (1619)
..+|+++.|+|++++++|+||+++..+|++|.+++++++. +++...|++|++|++||+.+|++. .
T Consensus 79 p~~Gev~~G~V~~v~~~G~fv~l~~~~glvh~s~l~~d~~~~d~~~~~~~g~~~~~~~~~Gd~VrvkV~~v~~~~~~~~~ 158 (180)
T 4ayb_E 79 PVVQEVVEGEVLQVDNYGVFVNLGPMDGLVHISQITDDTLKYDNVRGIIFGEKSKKVIQKGDKVRARVISVASTVTGRLP 158 (180)
T ss_dssp CCTTCEEEEEEEEEETTEEEEECSSSEEEEEGGGSCSSCEEECSSSCCEEETTTCCCCCTTCEEEEEEEEECC-------
T ss_pred ccCCCEEEEEEeeeccceEEEEECCccceEEeeecCCCccccchhcceEEEeccCeEECCCCEEEEEEEEEeCCCCcccC
Confidence 4789999999999999999999999999999999998765 467778999999999999998643 4
Q ss_pred eEEEeeeccccC
Q psy14505 1319 RVSLGMKQLGID 1330 (1619)
Q Consensus 1319 ~i~LSlK~~~~~ 1330 (1619)
++.||+|+.-.-
T Consensus 159 rI~ls~k~~gLG 170 (180)
T 4ayb_E 159 RIALTMRQPYLG 170 (180)
T ss_dssp CEEEECCSTTCE
T ss_pred cEEEEcCCCCCC
Confidence 899999986533
No 104
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=98.32 E-value=2.5e-07 Score=107.65 Aligned_cols=190 Identities=15% Similarity=0.051 Sum_probs=109.2
Q ss_pred cccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccc
Q psy14505 858 YIPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNV 937 (1619)
Q Consensus 858 ~~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 937 (1619)
..++|.+.|..||||+|+++.|+ .+|++++|++.++|.+. +.|-. ....+.+.. +..+.. -+|. +
T Consensus 74 ~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~D~~~~~~~----~~~~~--~~~~i~~~~---g~~i~~----~~g~-i 138 (281)
T 2f6r_A 74 GLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDSDHLGHRAY----APGGP--AYQPVVEAF---GTDILH----KDGT-I 138 (281)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEHHHHHHHHT----STTST--THHHHHHHH---CGGGBC----TTSS-B
T ss_pred CCEEEEEECCCCCCHHHHHHHHH-HCCCcEEehhHHHHHHh----cCChH--HHHHHHHHc---CccccC----CCCC-c
Confidence 34678999999999999999999 69999999999988433 22211 111111111 100000 0010 0
Q ss_pred ccc-cccccccc-c-cc--cccccHHHHHHHHHHHHhhhc--CCCeEEeccccCee-eecCCCeEEEEEcCHHHHHHhch
Q psy14505 938 TTL-IRNEKVSN-N-AS--KIAKFKNIRKELFKIQVKFRK--FPGLVADGRDMGTT-VFPDAFLKIFLTADIKQRTKRRY 1009 (1619)
Q Consensus 938 ~~~-ir~~~~~~-~-~s--~~a~~~~vr~~~~~~~r~~a~--~~~~V~~GRd~~~~-v~p~a~~kifl~A~~e~Ra~Rr~ 1009 (1619)
... +....... . .. .-...|.++....+.+.++.. .+.||++|...... +.+..++.|||+||+++|.+|+.
T Consensus 139 dr~~l~~~vf~~~~~~~~l~~i~~P~i~~~~~~~~~~~~~~~~~~vIveg~~l~~~~~~~~~d~vI~l~a~~ev~~~Rl~ 218 (281)
T 2f6r_A 139 NRKVLGSRVFGNKKQMKILTDIVWPVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQSMVHEVWTVVIPETEAVRRIV 218 (281)
T ss_dssp CHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHHH
T ss_pred CHHHHHHHHhCCHHHHHHhhcccChHHHHHHHHHHHHHhccCCCEEEEEechhhccchHHhCCEEEEEcCCHHHHHHHHH
Confidence 000 00000000 0 00 002356666666555544432 34699999754321 22335799999999999999965
Q ss_pred HHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhhhh
Q psy14505 1010 KQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLFK 1075 (1619)
Q Consensus 1010 ~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ll~ 1075 (1619)
.+ . +.+.+++.+.+..+- ....+. . ..| ++||++. +++++.+.|.+.+..+++
T Consensus 219 ~R---~--g~s~e~~~~ri~~q~-~~~~~~----~-~AD-~vIdn~~-s~eel~~~I~~~l~~l~~ 271 (281)
T 2f6r_A 219 ER---D--GLSEAAAQSRLQSQM-SGQQLV----E-QSN-VVLSTLW-ESHVTQSQVEKAWNLLQK 271 (281)
T ss_dssp HH---H--CCCHHHHHHHHHTSC-CHHHHH----H-TCS-EEEECSS-CHHHHHHHHHHHHHHHHH
T ss_pred Hc---C--CCCHHHHHHHHHHcC-ChHhhH----h-hCC-EEEECCC-CHHHHHHHHHHHHHHHHH
Confidence 44 2 347788887776651 111110 1 122 7789886 999999999888776554
No 105
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.32 E-value=8.4e-07 Score=95.22 Aligned_cols=71 Identities=20% Similarity=0.350 Sum_probs=58.5
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCcccc------------ccCCCCCCEEEEEEEEeecCCC--
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEI------------IRNFKKGDEIEAIILSIDVEKE-- 1492 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~------------~~~f~vGq~V~~~Vl~vd~e~~-- 1492 (1619)
.+|+++.|+|+++++||+||++ +.++||||.+++++ .+..++ ...|++||.|+++|+++|.+++
T Consensus 80 ~~Gev~~G~V~~v~~fG~fV~l-~~~~glvhis~l~~-~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~ 157 (172)
T 2c35_B 80 FKGEVVDAVVTQVNKVGLFTEI-GPMSCFISRHSIPS-EMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDI 157 (172)
T ss_dssp CTTCEEEEEEEEEETTEEEEEE-TTEEEEEEGGGSCT-TEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEE
T ss_pred CCCCEEEEEEEEEeCCEEEEEE-CCEEEEEEHHHCCC-CcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCc
Confidence 4799999999999999999999 56889999999973 322222 4479999999999999998876
Q ss_pred -eEEEeeec
Q psy14505 1493 -RISLGIKQ 1500 (1619)
Q Consensus 1493 -ri~LSlK~ 1500 (1619)
++. |||+
T Consensus 158 ~~ig-sm~~ 165 (172)
T 2c35_B 158 FAIG-SLMD 165 (172)
T ss_dssp EEEE-ECCS
T ss_pred EEEE-EecC
Confidence 555 7765
No 106
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.31 E-value=1e-06 Score=95.94 Aligned_cols=179 Identities=16% Similarity=0.158 Sum_probs=100.4
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
++|.+.|.+|+||+|.++.|++++|++++|+|.++|... ..+-+. ....+.+.+. +|+.+..
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~----~~~~~~-~~~~~~~~~~-------------~g~~~~~ 65 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER----KNPDSQ-YGELIEKYIK-------------EGKIVPV 65 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH----HCTTST-THHHHHHHHH-------------TTCCCCH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHH----hccCCh-HHHHHHHHHH-------------CCCcCCH
Confidence 468888999999999999999999999999999988432 222111 1112222211 1111100
Q ss_pred cccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCee----ee------cCCCeEEEEEcCHHHHHHhch
Q psy14505 940 LIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTT----VF------PDAFLKIFLTADIKQRTKRRY 1009 (1619)
Q Consensus 940 ~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~----v~------p~a~~kifl~A~~e~Ra~Rr~ 1009 (1619)
+ ...+.++..+.+.+..++..+.+|++|-..... .. +..++.|||+||++++.+|..
T Consensus 66 ~-------------~~~~~l~~~~~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~ 132 (196)
T 1tev_A 66 E-------------ITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCL 132 (196)
T ss_dssp H-------------HHHHHHHHHHHHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHH
T ss_pred H-------------HHHHHHHHHHHhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHH
Confidence 0 122344444444444444566788888533211 00 123478999999999999965
Q ss_pred HHHHh-cCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhh
Q psy14505 1010 KQLMQ-KGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFA 1071 (1619)
Q Consensus 1010 ~~l~~-~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~ 1071 (1619)
.+-.. .....+.+.+.+.+..--..... -...|....+.++||++ .+++++++.|.+.+.
T Consensus 133 ~R~~~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~y~~~~~~~~id~~-~~~~~v~~~i~~~l~ 193 (196)
T 1tev_A 133 ERGKSSGRSDDNRESLEKRIQTYLQSTKP-IIDLYEEMGKVKKIDAS-KSVDEVFDEVVQIFD 193 (196)
T ss_dssp HHHHTSSCCSCCHHHHHHHHHHHHHHHHH-HHHHHHHTTCEEEEETT-SCHHHHHHHHHHHHH
T ss_pred cccccCCCCCCCHHHHHHHHHHHHHhHHH-HHHHHHhcCCEEEEECC-CCHHHHHHHHHHHHH
Confidence 54221 12223444444433221111000 00012222345689998 799999999987654
No 107
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.30 E-value=4.4e-07 Score=98.25 Aligned_cols=155 Identities=18% Similarity=0.187 Sum_probs=90.0
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCcccccc
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTTL 940 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 940 (1619)
+|.+.|++|+||+|+++.|++++|++|+|++.+++... |.+. ..+ ... +|+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D~~~~~~~------g~~~---~~~---~~~------------~g~----- 54 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTDVAIEQRT------GRSI---ADI---FAT------------DGE----- 54 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHH------SSCH---HHH---HHH------------HCH-----
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCchHHHHHc------CCCH---HHH---HHH------------hCh-----
Confidence 47788999999999999999999999999999988432 3321 110 000 000
Q ss_pred ccccccccccccccccHHHHHHHHHHHHhhhcCCCeEE-eccccCeeeec---C---CCeEEEEEcCHHHHHHhchHHHH
Q psy14505 941 IRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVA-DGRDMGTTVFP---D---AFLKIFLTADIKQRTKRRYKQLM 1013 (1619)
Q Consensus 941 ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~-~GRd~~~~v~p---~---a~~kifl~A~~e~Ra~Rr~~~l~ 1013 (1619)
+.++....+..+++....++|+ .|. +.++-| + .+..|||+||+++|.+|...+ .
T Consensus 55 ----------------~~~~~~~~~~~~~~~~~~~~vi~~g~--~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r-~ 115 (184)
T 2iyv_A 55 ----------------QEFRRIEEDVVRAALADHDGVLSLGG--GAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGN-T 115 (184)
T ss_dssp ----------------HHHHHHHHHHHHHHHHHCCSEEECCT--TGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCC-C
T ss_pred ----------------HHHHHHHHHHHHHHHhcCCeEEecCC--cEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCC-C
Confidence 1122222233334433344554 353 222211 0 458899999999999993321 0
Q ss_pred hcC-C-CCCHHHHHHHH-HhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhh
Q psy14505 1014 QKG-F-SVSMSDLLINL-IKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFAT 1072 (1619)
Q Consensus 1014 ~~~-~-~~~~~~~~~~i-~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ 1072 (1619)
.+. . ..+.++..+.+ ..|+... ....+++|||+.++++++++.|++.+..
T Consensus 116 ~r~~~~~~~~~~~i~~~~~~r~~~~---------~~~~~~~Idt~~~s~ee~~~~I~~~l~~ 168 (184)
T 2iyv_A 116 VRPLLAGPDRAEKYRALMAKRAPLY---------RRVATMRVDTNRRNPGAVVRHILSRLQV 168 (184)
T ss_dssp CCSSTTSCCHHHHHHHHHHHHHHHH---------HHHCSEEEECSSSCHHHHHHHHHTTSCC
T ss_pred CCCCccCCCHHHHHHHHHHHHHHHH---------hccCCEEEECCCCCHHHHHHHHHHHHhh
Confidence 000 0 11233333333 3443221 1223489999999999999999887654
No 108
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.28 E-value=6.4e-07 Score=101.30 Aligned_cols=74 Identities=16% Similarity=0.139 Sum_probs=66.4
Q ss_pred ccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccC---CCccccccCCCEEEEEEEEeecccceEEEeeec
Q psy14505 1338 RYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKN---VTPSKIVQLNDTVEIMILEINEERRRISLGMKQ 1413 (1619)
Q Consensus 1338 ~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~---~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~ 1413 (1619)
..++||+|.|+|+++.++|+||+++.+.+|++|.+++++ .+. .++.+.|++||.|.|+|++++.+ +++.||+|.
T Consensus 71 ~p~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~-~~~~~~~~~~~~l~vGD~V~arVi~v~~~-~~i~LS~r~ 147 (251)
T 2je6_I 71 YPKINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLG-RSINVGEDLRRYLDVGDYVIARIENFDRS-IDPVLSVKG 147 (251)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHT-SCCCTTCCCSSSCCTTCEEEEEEEEEETT-EEEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcC-CccccccchhhcCCCCCEEEEEEEEECCC-CcEEEEEcc
Confidence 478999999999999999999999889999999999976 344 67788999999999999999964 689999875
No 109
>2bh8_A 1B11; transcription, molecular evolution, unique architecture, transcription regulation, phosphorylation; 1.9A {Escherichia coli}
Probab=98.28 E-value=1e-06 Score=85.67 Aligned_cols=82 Identities=30% Similarity=0.634 Sum_probs=64.8
Q ss_pred ccCCCcEEEEEEEEEe---cCeEEEEe--CCEEEEeeccccCccccCCCccccccCCEEEEEEEEeecCCCeEEEeeecc
Q psy14505 1253 TLKEGCTVKGVVKNIT---DYGAFIDL--GGIDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEKNRVSLGMKQL 1327 (1619)
Q Consensus 1253 ~l~~G~iv~g~V~~v~---~~G~~V~l--~gi~g~l~~sels~~~~~~~~~~~~vG~~v~vrVl~vd~~~~~i~LSlK~~ 1327 (1619)
....++.++|+|+... .+| |+.. ++.+.|+|++.+.+...
T Consensus 10 ~~~~~~~~~G~Vk~fn~~kGfG-FI~~~~gg~dvfvH~s~l~~~~~---------------------------------- 54 (101)
T 2bh8_A 10 SRLQSGKMTGIVKWFNADKGFG-FITPDDGSKDVFVHFSAGSSGAA---------------------------------- 54 (101)
T ss_dssp ------CEEEEEEEEEGGGTEE-EEEESSSSCEEEEECCCSCSSSC----------------------------------
T ss_pred cccccccceeEEEEEECCCCCE-EEEeCCCCcEEEEEEEEEecCCc----------------------------------
Confidence 3456788999999984 468 6664 36999999999987531
Q ss_pred ccCCccccccccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCc
Q psy14505 1328 GIDPWIGLSFRYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDW 1376 (1619)
Q Consensus 1328 ~~~~~~~~~~~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~ 1376 (1619)
....+++|+.|++.|+.+.++|+||++.++++||||+|+++|
T Consensus 55 -------~~~~l~~Ge~V~g~V~~i~~fG~fv~l~~~~eGlvhis~i~~ 96 (101)
T 2bh8_A 55 -------VRGNPQQGDRVEGKIKSITDFGIFIGLDGGIDGLVHLSDISW 96 (101)
T ss_dssp -------CCCCCCTTCEEEEEEEECCSEEEEECTTSCEEEEEEEEEEEE
T ss_pred -------cccCCCCCCEEEEEEEEeCCcEEEEEcCCCceEEEEHHHCcc
Confidence 113588999999999999999999999889999999999998
No 110
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.27 E-value=1.3e-06 Score=93.41 Aligned_cols=156 Identities=15% Similarity=0.195 Sum_probs=89.9
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
++|.+.|.+|+||+|+++.|++++|++++|++.+++.. .|.+. .++.+. . |
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~d~~~~~~------~g~~~---~~~~~~-------~--------~----- 53 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDTDIFMQHT------SGMTV---ADVVAA-------E--------G----- 53 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH------HCSCH---HHHHHH-------H--------H-----
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcccHHHHHH------hCCCH---HHHHHH-------c--------C-----
Confidence 35788899999999999999999999999999887632 23321 111000 0 0
Q ss_pred cccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEe-ccccCeeee-------cCCCeEEEEEcCHHHHHHhchHH
Q psy14505 940 LIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVAD-GRDMGTTVF-------PDAFLKIFLTADIKQRTKRRYKQ 1011 (1619)
Q Consensus 940 ~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~-GRd~~~~v~-------p~a~~kifl~A~~e~Ra~Rr~~~ 1011 (1619)
.+..+.....+.++++ .+++|++ |- +.+++ .+.++.|||+||++++.+|....
T Consensus 54 ----------------~~~~~~~~~~~~~~l~-~~~~vi~~g~--~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~~ 114 (173)
T 1e6c_A 54 ----------------WPGFRRRESEALQAVA-TPNRVVATGG--GMVLLEQNRQFMRAHGTVVYLFAPAEELALRLQAS 114 (173)
T ss_dssp ----------------HHHHHHHHHHHHHHHC-CSSEEEECCT--TGGGSHHHHHHHHHHSEEEEEECCHHHHHHHHHHH
T ss_pred ----------------HHHHHHHHHHHHHHhh-cCCeEEECCC--cEEeCHHHHHHHHcCCeEEEEECCHHHHHHHHhhc
Confidence 0011222233444555 5567775 41 22222 22468999999999999993200
Q ss_pred HHhc-C--CCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhh
Q psy14505 1012 LMQK-G--FSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFA 1071 (1619)
Q Consensus 1012 l~~~-~--~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~ 1071 (1619)
.+ + .....++..+.+..--..+. |+... ..++|||+..+++++++.|.+.+.
T Consensus 115 --~r~~~r~~~~~~~~~~~~~~~~~~~~-----~~~~~-~~~~Id~~~~~~~~~~~~i~~~l~ 169 (173)
T 1e6c_A 115 --LQAHQRPTLTGRPIAEEMEAVLRERE-----ALYQD-VAHYVVDATQPPAAIVCELMQTMR 169 (173)
T ss_dssp --HCSCCCCCTTHHHHHHHHHHHHHHHH-----HHHHH-HCSEEEETTSCHHHHHHHHHHHTT
T ss_pred --cCCCCCCcCCCCCHHHHHHHHHHHHH-----HHHHh-CcEEEECCCCCHHHHHHHHHHHhc
Confidence 22 1 11222333333322111111 11111 237899999999999999987654
No 111
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.26 E-value=7e-07 Score=100.39 Aligned_cols=75 Identities=11% Similarity=0.175 Sum_probs=65.5
Q ss_pred ccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCcc---ccCCCccccccCCCEEEEEEEEeecccceEEEeeec
Q psy14505 1338 RYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWI---NKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQ 1413 (1619)
Q Consensus 1338 ~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~---~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~ 1413 (1619)
.+++||+|.|+|+++.++|+||+++.+.+|++|.+++++. ....++.+.|++||.|.|+|++++.+ +++.||+|.
T Consensus 63 ~p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~-~~i~LS~k~ 140 (235)
T 2z0s_A 63 VPQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKT-RSPLLTVQG 140 (235)
T ss_dssp CCCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTT-SCEEEECCS
T ss_pred CCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCC-CcEEEEEec
Confidence 4789999999999999999999998899999999999751 12356788999999999999999954 589999874
No 112
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.25 E-value=1.9e-06 Score=94.14 Aligned_cols=173 Identities=21% Similarity=0.224 Sum_probs=97.3
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
++|.+.|++|+||+|.++.|++++|++++|++.++|.... .+- .....+.+... +|+.+..
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~----~~~--~~~~~i~~~~~-------------~g~~~~~ 73 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELA----SES--ERSKLIRDIME-------------RGDLVPS 73 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH----HTC--HHHHHHHHHHH-------------TTCCCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHH----hCC--HHHHHHHHHHH-------------cCCcCCH
Confidence 5788999999999999999999999999999999985432 110 00111111111 1211111
Q ss_pred cccccccccccccccccHHHHHHHHHHHHh-hhcCCCeEEeccccCe----e---eecCCCeEEEEEcCHHHHHHhchHH
Q psy14505 940 LIRNEKVSNNASKIAKFKNIRKELFKIQVK-FRKFPGLVADGRDMGT----T---VFPDAFLKIFLTADIKQRTKRRYKQ 1011 (1619)
Q Consensus 940 ~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~-~a~~~~~V~~GRd~~~----~---v~p~a~~kifl~A~~e~Ra~Rr~~~ 1011 (1619)
+.+...+.+.+.. ++...++|++|-.... . .++..++.|||+||++++.+|..
T Consensus 74 -----------------~~~~~~~~~~i~~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~-- 134 (199)
T 2bwj_A 74 -----------------GIVLELLKEAMVASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLL-- 134 (199)
T ss_dssp -----------------HHHHHHHHHHHHHHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHH--
T ss_pred -----------------HHHHHHHHHHHhcccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHH--
Confidence 1122222222222 2345678998842210 0 11245689999999999999833
Q ss_pred HHhcCCC-CCHHHHHHHHHhhhhh--cccCCCC-CCCCCCCceEEccCcccchhhhhhhhhhhhhh
Q psy14505 1012 LMQKGFS-VSMSDLLINLIKRDIR--DKTRNLS-PLKCPEQAHLLNTSKMNINQVVNQILDCFATL 1073 (1619)
Q Consensus 1012 l~~~~~~-~~~~~~~~~i~~rD~~--d~~r~~~-~l~~~~dal~Idts~l~ieevv~~I~~~i~~l 1073 (1619)
.++.. ...++..+.+.+|... +..+... .|..+++.++||++ .+++++++.|.+.+...
T Consensus 135 --~R~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~id~~-~~~e~v~~~i~~~l~~~ 197 (199)
T 2bwj_A 135 --QMSRSSLPVDDTTKTIAKRLEAYYRASIPVIAYYETKTQLHKINAE-GTPEDVFLQLCTAIDSI 197 (199)
T ss_dssp --HTCCCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSEEEEEETT-SCHHHHHHHHHHHHHHH
T ss_pred --cCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECC-CCHHHHHHHHHHHHHHh
Confidence 23321 2233334444444321 1111000 12222233789964 69999999998876543
No 113
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.25 E-value=3.9e-06 Score=89.26 Aligned_cols=167 Identities=14% Similarity=0.131 Sum_probs=95.7
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
++|.+.|++|+||+|.++.| +++|++++++|.++|.... ..+.+..+...+.+..... .
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~---~-------------- 60 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYS---IEAKPGERLMDFAKRLREI---Y-------------- 60 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHH---HHC---CCHHHHHHHHHHH---H--------------
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHH---hcCCChhHHHHHHHHHHhh---C--------------
Confidence 46888899999999999999 9999999999999985443 3333222222221111000 0
Q ss_pred cccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCe-------eeecCCCeEEEEEcCHHHHHHhchHHH
Q psy14505 940 LIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGT-------TVFPDAFLKIFLTADIKQRTKRRYKQL 1012 (1619)
Q Consensus 940 ~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~-------~v~p~a~~kifl~A~~e~Ra~Rr~~~l 1012 (1619)
....++....+.++. .....+|++|. ... -.++..++.|||++|++++.+|...
T Consensus 61 ---------------~~~~~~~~~~~~l~~-~~~~~vi~dg~-~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~-- 121 (179)
T 3lw7_A 61 ---------------GDGVVARLCVEELGT-SNHDLVVFDGV-RSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIE-- 121 (179)
T ss_dssp ---------------CTTHHHHHHHHHHCS-CCCSCEEEECC-CCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHT--
T ss_pred ---------------CHHHHHHHHHHHHHh-cCCCeEEEeCC-CCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHh--
Confidence 001122222222211 34567889884 210 1122234889999999999999432
Q ss_pred HhcCC---CCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhhh
Q psy14505 1013 MQKGF---SVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLF 1074 (1619)
Q Consensus 1013 ~~~~~---~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ll 1074 (1619)
++. ..+.+++.+.+.. ...+...++.... .++||++. +++++++.|.+.+..++
T Consensus 122 --R~~~~~~~~~~~~~~r~~~----~~~~~~~~~~~~a-d~vId~~~-~~~~~~~~i~~~l~~~l 178 (179)
T 3lw7_A 122 --RLRSDDSKEISELIRRDRE----ELKLGIGEVIAMA-DYIITNDS-NYEEFKRRCEEVTDRVL 178 (179)
T ss_dssp --CC----CCCHHHHHHHHHH----HHHHTHHHHHHTC-SEEEECCS-CHHHHHHHHHHHHHHHC
T ss_pred --ccCCCCcchHHHHHHHHHh----hhccChHhHHHhC-CEEEECCC-CHHHHHHHHHHHHHHHh
Confidence 222 2466666654422 1111111222222 26788887 99999999988776554
No 114
>2c35_B Human RPB7, DNA-directed RNA polymerase II 19 kDa polypeptide; transcription, nucleotidyltransferase; 2.70A {Homo sapiens} SCOP: b.40.4.5 d.230.1.1
Probab=98.24 E-value=1.8e-06 Score=92.73 Aligned_cols=73 Identities=16% Similarity=0.267 Sum_probs=58.6
Q ss_pred cccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCcc---ccCC--------CccccccCCCEEEEEEEEeecccc--
Q psy14505 1339 YPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWI---NKNV--------TPSKIVQLNDTVEIMILEINEERR-- 1405 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~---~~~~--------~~~~~~~vG~~V~vrVl~id~e~~-- 1405 (1619)
..+|++++|+|++++++|+||+++ ..+||||.|+|++. .... +....|++||.|+++|+++|.+.+
T Consensus 79 ~~~Gev~~G~V~~v~~fG~fV~l~-~~~glvhis~l~~~~~~d~~~~~~~~~~~~~~~~~~~Gd~V~vkV~~vd~~~~~~ 157 (172)
T 2c35_B 79 PFKGEVVDAVVTQVNKVGLFTEIG-PMSCFISRHSIPSEMEFDPNSNPPCYKTMDEDIVIQQDDEIRLKIVGTRVDKNDI 157 (172)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEET-TEEEEEEGGGSCTTEEEESSSSSCEEEETTSCSEEETTCEEEEEEEEEEEETTEE
T ss_pred CCCCCEEEEEEEEEeCCEEEEEEC-CEEEEEEHHHCCCCcEECCCCCccEEEeCCCCEEECCCCEEEEEEEEEEcCCCCc
Confidence 358999999999999999999995 67899999999742 1122 225689999999999999998765
Q ss_pred -eEEEeeec
Q psy14505 1406 -RISLGMKQ 1413 (1619)
Q Consensus 1406 -ri~LSlK~ 1413 (1619)
++. |+|+
T Consensus 158 ~~ig-sm~~ 165 (172)
T 2c35_B 158 FAIG-SLMD 165 (172)
T ss_dssp EEEE-ECCS
T ss_pred EEEE-EecC
Confidence 444 7765
No 115
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=98.23 E-value=1e-06 Score=99.08 Aligned_cols=74 Identities=18% Similarity=0.322 Sum_probs=65.5
Q ss_pred cccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCC---CCccccccCCCCCCEEEEEEEEeecCCCeEEEeeec
Q psy14505 1426 HKKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWT---DPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQ 1500 (1619)
Q Consensus 1426 ~~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~---~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~ 1500 (1619)
.++|++|.|+|+++.++|+||.+.....|++|.+++++. ....++.+.|++||.|.|+|++++.+ +++.||+|.
T Consensus 64 p~~GDiV~G~V~~v~~~~~~V~I~~~~~g~l~isei~~~~~~~~~~~~~~~l~~GD~V~a~Vi~v~~~-~~i~LS~k~ 140 (235)
T 2z0s_A 64 PQAGDVVIGLIQSVGIMNWFVDINSPYVAVLSVQDFLGRPFNPAVDDMQSLLKVGDYIKAKVVAFDKT-RSPLLTVQG 140 (235)
T ss_dssp CCTTCCEEEEEEEECSSEEEEECSSSSCEEEEHHHHHTSCCCTTTTCCTTSSCTTCEEEEEEEEECTT-SCEEEECCS
T ss_pred CCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHhCCCccccchhhHhhcCCCCCEEEEEEEEECCC-CcEEEEEec
Confidence 378999999999999999999998899999999999841 24567888999999999999999964 589999975
No 116
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.22 E-value=3.4e-06 Score=92.78 Aligned_cols=155 Identities=17% Similarity=0.224 Sum_probs=92.1
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCcccc
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVT 938 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 938 (1619)
..+|.+.|++|+||+|.++.|++.+|+.++|++.++..........|....+....
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~------------------------ 73 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIEGDALHPPENIRKMSEGIPLTDDDRW------------------------ 73 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEEGGGGCCHHHHHHHHHTCCCCHHHHH------------------------
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEeCCcCcchhhHHHHhcCCCCCchhhH------------------------
Confidence 34688889999999999999999999999999888754333333344332211110
Q ss_pred ccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccC-------eeeecCCCeEEEEEcCHHHHHHhchHH
Q psy14505 939 TLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMG-------TTVFPDAFLKIFLTADIKQRTKRRYKQ 1011 (1619)
Q Consensus 939 ~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~-------~~v~p~a~~kifl~A~~e~Ra~Rr~~~ 1011 (1619)
..+..+...++...++|+++.... .-..+...+.|||+||++++.+|...+
T Consensus 74 ----------------------~~~~~l~~~~~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R 131 (202)
T 3t61_A 74 ----------------------PWLAAIGERLASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHR 131 (202)
T ss_dssp ----------------------HHHHHHHHHHTSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHH
T ss_pred ----------------------HHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHh
Confidence 011111112233445666642100 001122357899999999999995433
Q ss_pred HHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhh
Q psy14505 1012 LMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFAT 1072 (1619)
Q Consensus 1012 l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ 1072 (1619)
.+...+.+.+......++ ++......++||++ .+++++++.|.+.+..
T Consensus 132 ---~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~Id~~-~~~~e~~~~I~~~l~~ 179 (202)
T 3t61_A 132 ---TGHFMPSSLLQTQLETLE---------DPRGEVRTVAVDVA-QPLAEIVREALAGLAR 179 (202)
T ss_dssp ---HSSCCCHHHHHHHHHHCC---------CCTTSTTEEEEESS-SCHHHHHHHHHHHHHH
T ss_pred ---hccCCCHHHHHHHHHhcC---------CCCCCCCeEEEeCC-CCHHHHHHHHHHHHHH
Confidence 122223333333222211 23334457899999 7999999999887764
No 117
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=98.18 E-value=6.9e-07 Score=101.65 Aligned_cols=185 Identities=21% Similarity=0.256 Sum_probs=115.0
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCE----------EechhhHHHHHHHH----HHHcCCCCC-----cHHHHHHHHHc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFH----------YLDSGALYRLVTLS----AINNNIQLD-----NELELVILIKK 920 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~----------~~dtg~~yr~~~~~----a~~~~~~~~-----~~~~~~~~~~~ 920 (1619)
.++.+.|+.|+||+|.++.++..+|.. |++.+.+|+.++.. .....+... +.+.+.+.+..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~ 105 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKN 105 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCCCTTSGGGBCHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccCCCCCCcccccHHHHHHHHHH
Confidence 478999999999999999999988865 78888887643321 111111111 12223333322
Q ss_pred ccceecCceEEeCCccccccccccccccccccccccHHHHHHHHHHHHhhh-cCCCeEEeccccC--eeeecCCCeEEEE
Q psy14505 921 LNYNFLGKEVYLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFR-KFPGLVADGRDMG--TTVFPDAFLKIFL 997 (1619)
Q Consensus 921 ~~~~~~~~~~~~~~~~v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a-~~~~~V~~GRd~~--~~v~p~a~~kifl 997 (1619)
+. ......+..-+.....| ++. +.++ ...-+|+||-+.. .-+.+.++.+||+
T Consensus 106 l~---~~~~~~~~~ls~g~~~r----------~~~------------~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v 160 (245)
T 2jeo_A 106 IV---EGKTVEVPTYDFVTHSR----------LPE------------TTVVYPADVVLFEGILVFYSQEIRDMFHLRLFV 160 (245)
T ss_dssp HH---TTCCEEECCEETTTTEE----------CSS------------CEEECCCSEEEEECTTTTTSHHHHTTCSEEEEE
T ss_pred HH---CCCCeecccccccccCc----------cCc------------eEEecCCCEEEEeCccccccHHHHHhcCeEEEE
Confidence 10 00001111000000000 000 1122 2346888886533 1222226899999
Q ss_pred EcCHHHHHHhchHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceE---EccCcccchhhhhhhhhhhhh
Q psy14505 998 TADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHL---LNTSKMNINQVVNQILDCFAT 1072 (1619)
Q Consensus 998 ~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~---Idts~l~ieevv~~I~~~i~~ 1072 (1619)
+++.+.|+.||+.+.+.+| .+.+++++.+..|++.+..|.++|.....|+++ +|+ .++++++++.|.+++..
T Consensus 161 ~th~~~~~~r~~~r~~~~G--~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~dn-~~~~~~l~~~i~~~~~~ 235 (245)
T 2jeo_A 161 DTDSDVRLSRRVLRDVRRG--RDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDN-MVAINLIVQHIQDILNG 235 (245)
T ss_dssp ECCHHHHHHHHHHHHTC-----CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTTC-HHHHHHHHHHHHHHHHT
T ss_pred ECCHHHHHHHHHHHHHHcC--CCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCCc-cHHHHHHHHHHHHHHhc
Confidence 9999999999888754334 589999999999999998888889888888776 477 68999999998776654
No 118
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.16 E-value=2.3e-06 Score=95.56 Aligned_cols=75 Identities=20% Similarity=0.384 Sum_probs=66.7
Q ss_pred ccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeec
Q psy14505 1338 RYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQ 1413 (1619)
Q Consensus 1338 ~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~ 1413 (1619)
..++||+|.|+|+.+.++|+||+++...+|++|.+++++.....+..+.|++||.|.|+|++++. ++++.||+|.
T Consensus 54 ~p~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~ 128 (229)
T 2ba0_A 54 TPSVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKD 128 (229)
T ss_dssp CCCTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCS
T ss_pred cCCCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEcc
Confidence 36899999999999999999999988899999999998532456788999999999999999996 4689999875
No 119
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=98.16 E-value=4e-06 Score=90.35 Aligned_cols=156 Identities=20% Similarity=0.282 Sum_probs=89.2
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCcccccc
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTTL 940 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 940 (1619)
.|.+.|++|+||++.++.+++++|++|+|++.+++.. .+ .-.+ ++...
T Consensus 13 ~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~-------~~---------------~~~~--------~~~~~-- 60 (180)
T 3iij_A 13 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE-------QL---------------YDGY--------DEEYD-- 60 (180)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH-------TC---------------EEEE--------ETTTT--
T ss_pred eEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc-------ch---------------hhhh--------hhhhc--
Confidence 4677899999999999999999999999998887722 11 0000 00000
Q ss_pred ccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeeecC--CCeEEEEEcCHHHHHHhchHHHHhcCCC
Q psy14505 941 IRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFPD--AFLKIFLTADIKQRTKRRYKQLMQKGFS 1018 (1619)
Q Consensus 941 ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~p~--a~~kifl~A~~e~Ra~Rr~~~l~~~~~~ 1018 (1619)
..+.....+.+.+.. .++. ++.|++++.+. .+++ .++.|||+||++++.+|. ..++.
T Consensus 61 ----------~~~~~~~~~~~~~~~---~~~~-g~~vv~~~~~~--~~~~~~~~~vi~L~~~~e~l~~R~----~~r~~- 119 (180)
T 3iij_A 61 ----------CPILDEDRVVDELDN---QMRE-GGVIVDYHGCD--FFPERWFHIVFVLRTDTNVLYERL----ETRGY- 119 (180)
T ss_dssp ----------EEEECHHHHHHHHHH---HHHH-CCEEEECSCCT--TSCGGGCSEEEEEECCHHHHHHHH----HHTTC-
T ss_pred ----------CccCChHHHHHHHHH---HHhc-CCEEEEechhh--hcchhcCCEEEEEECCHHHHHHHH----HHcCC-
Confidence 001111122222221 2233 67888887444 4554 579999999999999993 33343
Q ss_pred CCHHHHHHHHHh--hhhhcccCCCCCCCCCCCceEEccCcccchhh---hhhhhhhhhhhh
Q psy14505 1019 VSMSDLLINLIK--RDIRDKTRNLSPLKCPEQAHLLNTSKMNINQV---VNQILDCFATLF 1074 (1619)
Q Consensus 1019 ~~~~~~~~~i~~--rD~~d~~r~~~~l~~~~dal~Idts~l~ieev---v~~I~~~i~~ll 1074 (1619)
+...+...... -+..-..| .++.. ..++||++..+++++ ++.|+++++.+.
T Consensus 120 -~~~~~~~~~~~~~~~~~~~~~--~~~y~--~~~~i~~~~~~~~ev~~~v~~i~~~l~~~~ 175 (180)
T 3iij_A 120 -NEKKLTDNIQCEIFQVLYEEA--TASYK--EEIVHQLPSNKPEELENNVDQILKWIEQWI 175 (180)
T ss_dssp -CHHHHHHHHHHHHTTHHHHHH--HHHSC--GGGEEEEECSSHHHHHHHHHHHHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHHHHHHHH--HHHcC--CCeEEEcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 22222211110 00000011 11111 257899999999999 666666665543
No 120
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.15 E-value=1.3e-06 Score=96.16 Aligned_cols=162 Identities=19% Similarity=0.209 Sum_probs=89.4
Q ss_pred cEEEecCCcCCCCchhHHHHHHHh---CCE--EechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCC
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKL---GFH--YLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNG 934 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l---~~~--~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1619)
.+|.+.|++|+||+|.++.++..+ |.. |+|...+.+. ...++.....+. .+......
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~-----~~~~~~~~~~~~-~~~~~~~~------------ 87 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG-----LNRDLSFKAEDR-AENIRRVG------------ 87 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT-----TTTTCCSSHHHH-HHHHHHHH------------
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhH-----hhcccCcChHHH-HHHHHHHH------------
Confidence 478888999999999999999999 766 9997655431 122332222111 11110000
Q ss_pred ccccccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeeecCCCeEEEEEcCHHHHHHhchHHHHh
Q psy14505 935 VNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQLMQ 1014 (1619)
Q Consensus 935 ~~v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~p~a~~kifl~A~~e~Ra~Rr~~~l~~ 1014 (1619)
++...+........++.++..+..|+.+. +++.. ..-+.|||+||++++++|+.++|..
T Consensus 88 -~~~~~~~~~~~~vi~~~~~~~~~~r~~~~----~~~~~----------------~~~~~v~L~a~~e~~~~R~~~~l~~ 146 (200)
T 3uie_A 88 -EVAKLFADAGIICIASLISPYRTDRDACR----SLLPE----------------GDFVEVFMDVPLSVCEARDPKGLYK 146 (200)
T ss_dssp -HHHHHHHHTTCEEEEECCCCCHHHHHHHH----HTSCT----------------TSEEEEEECCCHHHHHHHCTTSHHH
T ss_pred -HHHHHHHhCCceEEEecCCchHHHHHHHH----HhcCC----------------CCEEEEEEeCCHHHHHHhcccchHH
Confidence 00000111111111233344455555443 22221 1114599999999999997554322
Q ss_pred cCCCCCHHHHHHHHHhhhhhcccCCCCCCCC-CCCceEEccCc-ccchhhhhhhhhhhhh
Q psy14505 1015 KGFSVSMSDLLINLIKRDIRDKTRNLSPLKC-PEQAHLLNTSK-MNINQVVNQILDCFAT 1072 (1619)
Q Consensus 1015 ~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~-~~dal~Idts~-l~ieevv~~I~~~i~~ 1072 (1619)
+ ....+..+...-.+||.. +.++++|||+. ++++++++.|++.+..
T Consensus 147 ~------------~r~~~~~~~~~~~~~~~~~~~~~~~idt~~~~~~~e~v~~i~~~l~~ 194 (200)
T 3uie_A 147 L------------ARAGKIKGFTGIDDPYEPPLNCEISLGREGGTSPIEMAEKVVGYLDN 194 (200)
T ss_dssp H------------HHTTSSCSCBTTTBCCCCCSSCSEEECCSSCCCHHHHHHHHHHHHHH
T ss_pred H------------HhcCCCCCCCCCCCcCcCCCCCCEEEecCCCCCHHHHHHHHHHHHHH
Confidence 1 111111111112245653 46789999999 8999999999887754
No 121
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=98.13 E-value=4.8e-06 Score=93.01 Aligned_cols=73 Identities=23% Similarity=0.383 Sum_probs=66.4
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeec
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQ 1500 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~ 1500 (1619)
++|++|.|.|+++.++|+||.+.....|++|.+++++.....+..+.|++||.|.|+|++++. .+++.||+|.
T Consensus 56 ~~GDiV~G~V~~v~~~~a~V~I~~~~~g~l~isev~~~~~~~~~~~~l~~GD~V~arVi~v~~-~~~i~LS~r~ 128 (229)
T 2ba0_A 56 SVGDVVIGIIREVAANGWAVDIYSPYQAFLPVSENPEMKPNKKPNEVLDIGDAIIAKVLNIDP-KMKVTLTMKD 128 (229)
T ss_dssp CTTCEEEEEEEEECSSEEEEECSSSSCEEEEGGGCTTCCTTSCGGGTCCTTCEEEEEEEEECT-TCCEEEECCS
T ss_pred CCCCEEEEEEEEEeCCeEEEEeCCCeEEEEEHHHccccccccchhcccCCCCEEEEEEEEECC-CCcEEEEEcc
Confidence 789999999999999999999988899999999999433567888999999999999999996 4789999976
No 122
>2je6_I RRP4, exosome complex RNA-binding protein 1; nuclease, hydrolase, exonuclease, phosphorolytic, exoribonuclease, RNA degradation; HET: 1PE; 1.6A {Sulfolobus solfataricus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1 PDB: 2jea_I* 2jeb_I* 3l7z_C
Probab=98.10 E-value=2.6e-06 Score=96.36 Aligned_cols=72 Identities=19% Similarity=0.280 Sum_probs=65.4
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCc---cccccCCCCCCEEEEEEEEeecCCCeEEEeeec
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPG---EEIIRNFKKGDEIEAIILSIDVEKERISLGIKQ 1500 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~---~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~ 1500 (1619)
++|++|.|.|++++++|+||.+.....|++|.+++++ .+. .++.+.|++||.|.|+|++++.+ +++.||+|.
T Consensus 73 ~~GDiV~G~V~~v~~~ga~VdI~~~~~GlL~isei~~-~~~~~~~~~~~~l~vGD~V~arVi~v~~~-~~i~LS~r~ 147 (251)
T 2je6_I 73 KINDIVIGLVEDVEIYGWVVDIKAPYKAYLPASNLLG-RSINVGEDLRRYLDVGDYVIARIENFDRS-IDPVLSVKG 147 (251)
T ss_dssp CTTCEEEEEEEEECSSEEEEECSSSSCEEEEHHHHHT-SCCCTTCCCSSSCCTTCEEEEEEEEEETT-EEEEEECCS
T ss_pred CCCCEEEEEEEEEeCceEEEEcCCCeEEEEEHHHhcC-CccccccchhhcCCCCCEEEEEEEEECCC-CcEEEEEcc
Confidence 7899999999999999999999889999999999984 444 67788999999999999999964 699999976
No 123
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.10 E-value=1.4e-06 Score=93.22 Aligned_cols=71 Identities=15% Similarity=0.306 Sum_probs=58.4
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCcccc----------ccCCCCCCEEEEEEEEeecCCC---e
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEI----------IRNFKKGDEIEAIILSIDVEKE---R 1493 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~----------~~~f~vGq~V~~~Vl~vd~e~~---r 1493 (1619)
.+|+++.|+|++++++|+||++. .++||||.+++++ .+..++ ...|++||.|+++|+++|.+.+ +
T Consensus 83 ~~Gev~~G~V~~v~~fG~FV~l~-~~~glVh~s~l~~-~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~~~ 160 (172)
T 3h0g_G 83 FRGEVVDAIVTTVNKMGFFANIG-PLNVFVSSHLVPP-DMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEIFA 160 (172)
T ss_dssp CTTCEEECCCCEEETTEEECCBT-TBCCEEEGGGSCT-TCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCEEE
T ss_pred CCCCEEEEEEEEEEcceEEEEeC-CeEEEEEHHHCCC-ccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCceE
Confidence 57999999999999999999995 5889999999973 433333 4689999999999999999874 4
Q ss_pred EEEeeec
Q psy14505 1494 ISLGIKQ 1500 (1619)
Q Consensus 1494 i~LSlK~ 1500 (1619)
|. |||+
T Consensus 161 Ig-tm~~ 166 (172)
T 3h0g_G 161 IA-TMKE 166 (172)
T ss_dssp EE-ECCS
T ss_pred EE-EcCC
Confidence 44 5554
No 124
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=98.09 E-value=9.9e-06 Score=88.51 Aligned_cols=169 Identities=15% Similarity=0.163 Sum_probs=95.0
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCcccc
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVT 938 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 938 (1619)
-.+|.+.|..||||+|+++.+++.+|++++|++.++|.++.. . .+++.+.... . ++-+|. +.
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~~~----~-----~~~i~~~fG~---~-----~~~~g~-ld 73 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVLEE----V-----KEKLVELFGG---S-----VLEDGK-VN 73 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHH----T-----HHHHHHHHCG---G-----GBSSSS-BC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHHHH----H-----HHHHHHHhCh---h-----hcCCCC-cC
Confidence 457888999999999999999999999999999999976642 1 1111111100 0 000111 11
Q ss_pred c-cccc-----cccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccC-eeeecCCCeEEEEEcCHHHHHHhchHH
Q psy14505 939 T-LIRN-----EKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMG-TTVFPDAFLKIFLTADIKQRTKRRYKQ 1011 (1619)
Q Consensus 939 ~-~ir~-----~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~-~~v~p~a~~kifl~A~~e~Ra~Rr~~~ 1011 (1619)
. .++. ++.-.... -..+|.++..+.+.+.+. .+.+|+|+...- .-..+..+..||++||+++|.+|+.
T Consensus 74 r~~L~~~vF~~~~~~~~l~-~i~hP~i~~~~~~~~~~~--~~~vv~d~pll~e~~~~~~~d~vi~v~a~~e~r~~Rli-- 148 (192)
T 2grj_A 74 RKKLAGIVFESRENLKKLE-LLVHPLMKKRVQEIINKT--SGLIVIEAALLKRMGLDQLCDHVITVVASRETILKRNR-- 148 (192)
T ss_dssp HHHHHHHHTTCHHHHHHHH-HHHHHHHHHHHHHHHHTC--CEEEEEECTTTTTTTGGGGCSEEEEEECCHHHHHHHCS--
T ss_pred HHHHHHHHhCCHHHHHHHH-hhhCHHHHHHHHHHHHHc--CCEEEEEEeceeecChHHhCCEEEEEECCHHHHHHHHH--
Confidence 0 0111 00000001 125667776665443332 346788886321 1133446799999999999999951
Q ss_pred HHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhh
Q psy14505 1012 LMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATL 1073 (1619)
Q Consensus 1012 l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~l 1073 (1619)
. .++ +.. ..+..... +++||++. +++++.+.+.+.+..+
T Consensus 149 --------~-----~q~---~~~-----~~~~~~~A-D~vI~n~~-~~~~l~~~v~~~~~~l 187 (192)
T 2grj_A 149 --------E-----ADR---RLK-----FQEDIVPQ-GIVVANNS-TLEDLEKKVEEVMKLV 187 (192)
T ss_dssp --------S-----HHH---HHT-----TCTTCCCC-SEEEECSS-CHHHHHHHHHHHHHHH
T ss_pred --------H-----hcC---Cch-----hhhHHhcC-CEEEECCC-CHHHHHHHHHHHHHHH
Confidence 0 111 110 01111122 36677773 8999988887766544
No 125
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.05 E-value=4.8e-06 Score=88.50 Aligned_cols=153 Identities=16% Similarity=0.166 Sum_probs=89.7
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCcccccc
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTTL 940 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 940 (1619)
.|.+.|.+|+||+|.++.|++++|++++|++.+.+... |.. ..++ ... + |+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~------g~~---~~~~---~~~----~--------~~----- 52 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDVDEEVQKRE------GLS---IPQI---FEK----K--------GE----- 52 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEHHHHHHHHH------TSC---HHHH---HHH----S--------CH-----
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEECcHHHHHHc------CCC---HHHH---HHH----h--------Ch-----
Confidence 57888999999999999999999999999998876321 221 1111 000 0 00
Q ss_pred ccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEe-cc--ccC---eeeecCCCeEEEEEcCHHHHHHhchHHHHh
Q psy14505 941 IRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVAD-GR--DMG---TTVFPDAFLKIFLTADIKQRTKRRYKQLMQ 1014 (1619)
Q Consensus 941 ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~-GR--d~~---~~v~p~a~~kifl~A~~e~Ra~Rr~~~l~~ 1014 (1619)
+..+....++.++++..+++|++ |. ... .-.++..++.|||+||++++.+|...+ .
T Consensus 53 ----------------~~~~~~~~~~l~~l~~~~~~Vi~~g~~~~~~~~~~~~l~~~~~~i~l~~~~e~~~~R~~~r-~- 114 (168)
T 2pt5_A 53 ----------------AYFRKLEFEVLKDLSEKENVVISTGGGLGANEEALNFMKSRGTTVFIDIPFEVFLERCKDS-K- 114 (168)
T ss_dssp ----------------HHHHHHHHHHHHHHTTSSSEEEECCHHHHTCHHHHHHHHTTSEEEEEECCHHHHHHHCBCT-T-
T ss_pred ----------------HHHHHHHHHHHHHHhccCCeEEECCCCEeCCHHHHHHHHcCCEEEEEECCHHHHHHHHhCC-C-
Confidence 01112223344556656778886 42 111 012333579999999999999994322 0
Q ss_pred cCCCC--CHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhh
Q psy14505 1015 KGFSV--SMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFA 1071 (1619)
Q Consensus 1015 ~~~~~--~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~ 1071 (1619)
..... ..+.+.+...+|... +. . ..++| ++..+++++++.|.+.+.
T Consensus 115 ~r~~~~~~~~~i~~~~~~~~~~--------~~-~-~~~~i-~~~~~~~~~~~~i~~~l~ 162 (168)
T 2pt5_A 115 ERPLLKRPLDEIKNLFEERRKI--------YS-K-ADIKV-KGEKPPEEVVKEILLSLE 162 (168)
T ss_dssp CCBGGGSCGGGTHHHHHHHHHH--------HT-T-SSEEE-ECSSCHHHHHHHHHHHHH
T ss_pred CCCCCcchHHHHHHHHHHHHHH--------HH-h-CCEEE-CCCCCHHHHHHHHHHHHH
Confidence 01111 133344444333211 11 1 23667 777899999999987654
No 126
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.04 E-value=7.8e-06 Score=88.65 Aligned_cols=174 Identities=17% Similarity=0.201 Sum_probs=95.8
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
.+|.+.|++|+||+|.++.|++++|++++|++.++|... ..|-. ....+.+.... |...
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~----~~~~~--~~~~i~~~~~~-------------g~~~-- 65 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQ----QSGSK--DGEMIATMIKN-------------GEIV-- 65 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH----HTTCT--THHHHHHHHHT-------------TCCC--
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHH----hcCCH--HHHHHHHHHHC-------------CCCC--
Confidence 478888999999999999999999999999999888432 22211 11222222111 1100
Q ss_pred cccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCe----ee---ec---CCCeEEEEEcCHHHHHHhch
Q psy14505 940 LIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGT----TV---FP---DAFLKIFLTADIKQRTKRRY 1009 (1619)
Q Consensus 940 ~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~----~v---~p---~a~~kifl~A~~e~Ra~Rr~ 1009 (1619)
.....+..+.+.+... ...++|++|..... .+ +. ..++.|||+||++++.+|..
T Consensus 66 ---------------~~~~~~~~l~~~i~~~-~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~ 129 (194)
T 1qf9_A 66 ---------------PSIVTVKLLKNAIDAN-QGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLL 129 (194)
T ss_dssp ---------------CHHHHHHHHHHHHHTS-TTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHH
T ss_pred ---------------CHHHHHHHHHHHHHhc-CCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHH
Confidence 0011222333322222 44678888832110 00 01 23578999999999999954
Q ss_pred HHHHh-cCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhh
Q psy14505 1010 KQLMQ-KGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFAT 1072 (1619)
Q Consensus 1010 ~~l~~-~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ 1072 (1619)
.+-.. .....+.+++.+.+..-...... ....|..++..++||++ .+++++++.|.+.+..
T Consensus 130 ~R~~~~~r~~~~~~~~~~ri~~~~~~~~~-~~~~~~~~~~~~~id~~-~~~~~~~~~i~~~l~~ 191 (194)
T 1qf9_A 130 KRGESSGRSDDNIESIKKRFNTFNVQTKL-VIDHYNKFDKVKIIPAN-RDVNEVYNDVENLFKS 191 (194)
T ss_dssp HHHTTSCCTTCSHHHHHHHHHHHHHTHHH-HHHHHHHTTCEEEEECS-SCHHHHHHHHHHHHHH
T ss_pred hccccCCCCCCCHHHHHHHHHHHHHhHHH-HHHHHHhCCCEEEEECC-CCHHHHHHHHHHHHHH
Confidence 43110 11122355665555431111100 00011112224789998 7999999999876653
No 127
>3h0g_G DNA-directed RNA polymerase II subunit RPB7; transcription, multi-protein complex, DNA- binding, magnesium; 3.65A {Schizosaccharomyces pombe}
Probab=98.04 E-value=2.2e-06 Score=91.74 Aligned_cols=73 Identities=19% Similarity=0.259 Sum_probs=59.2
Q ss_pred ccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCC----------CccccccCCCEEEEEEEEeecccc--
Q psy14505 1338 RYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNV----------TPSKIVQLNDTVEIMILEINEERR-- 1405 (1619)
Q Consensus 1338 ~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~----------~~~~~~~vG~~V~vrVl~id~e~~-- 1405 (1619)
+..+|++++|+|++++++|+||+++ .++||||.++|++ ...- +....|++||.|+++|+++|.+.+
T Consensus 81 ~p~~Gev~~G~V~~v~~fG~FV~l~-~~~glVh~s~l~~-~~~~d~~~~~~~~~~~~~~~~~Gd~VrvkV~~vd~~~~~~ 158 (172)
T 3h0g_G 81 RPFRGEVVDAIVTTVNKMGFFANIG-PLNVFVSSHLVPP-DMKFDPTANPPNYSGEDQVIEKGSNVRLKIVGTRTDATEI 158 (172)
T ss_dssp CCCTTCEEECCCCEEETTEEECCBT-TBCCEEEGGGSCT-TCCCBSSSSSCBEESSSCEECSSCCEEEEEEEEEESSSCE
T ss_pred ccCCCCEEEEEEEEEEcceEEEEeC-CeEEEEEHHHCCC-ccccCcccccceEecCCcEECCCCEEEEEEEEEECCCCCc
Confidence 3568999999999999999999995 6889999999964 2222 335789999999999999998874
Q ss_pred -eEEEeeec
Q psy14505 1406 -RISLGMKQ 1413 (1619)
Q Consensus 1406 -ri~LSlK~ 1413 (1619)
++. |+|+
T Consensus 159 ~~Ig-tm~~ 166 (172)
T 3h0g_G 159 FAIA-TMKE 166 (172)
T ss_dssp EEEE-ECCS
T ss_pred eEEE-EcCC
Confidence 444 5553
No 128
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=98.01 E-value=4.2e-06 Score=89.39 Aligned_cols=155 Identities=19% Similarity=0.194 Sum_probs=84.9
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCcccccc
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTTL 940 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 940 (1619)
+|.+.|++|+||+|.++.++..+|++|+|++.+.+... |.+ ...+-+. + |+
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~~~id~d~~~~~~~------~~~---i~~i~~~-------~--------g~----- 56 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRT------GAD---VGWVFDL-------E--------GE----- 56 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTCEEEEHHHHHHHHH------TSC---HHHHHHH-------H--------HH-----
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEeccHHHHHHh------CcC---HHHHHHH-------H--------hH-----
Confidence 57788999999999999999999999999988776321 211 1111000 0 00
Q ss_pred ccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEe-ccccCeee-------ecCCCeEEEEEcCHHHHHHhchHHH
Q psy14505 941 IRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVAD-GRDMGTTV-------FPDAFLKIFLTADIKQRTKRRYKQL 1012 (1619)
Q Consensus 941 ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~-GRd~~~~v-------~p~a~~kifl~A~~e~Ra~Rr~~~l 1012 (1619)
..++.....+...+....++|+. |. +.++ +...++.+|++|+++.+.+|...+-
T Consensus 57 ----------------~~~~~~~~~~l~~l~~~~~~v~~~~~--~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~ 118 (173)
T 1kag_A 57 ----------------EGFRDREEKVINELTEKQGIVLATGG--GSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDK 118 (173)
T ss_dssp ----------------HHHHHHHHHHHHHHHTSSSEEEECCT--TGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC----
T ss_pred ----------------HHHHHHHHHHHHHHHhCCCeEEECCC--eEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCC
Confidence 00111111222233334455553 21 1111 1234578999999999999966541
Q ss_pred HhcC---CCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhh
Q psy14505 1013 MQKG---FSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFA 1071 (1619)
Q Consensus 1013 ~~~~---~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~ 1071 (1619)
.... ...+.+.+...+..|+.... +..+++|||+..+++++++.|.+.+.
T Consensus 119 ~r~~~~~~~~~~~~~~~~~~~r~~~~~---------~~a~~~id~~~~~~~~~~~~i~~~l~ 171 (173)
T 1kag_A 119 KRPLLHVETPPREVLEALANERNPLYE---------EIADVTIRTDDQSAKVVANQIIHMLE 171 (173)
T ss_dssp --CCSSSSCCCHHHHHHHHHHHHHHHH---------HHCSEEC-----CHHHHHHHHHHHHC
T ss_pred CCCCCCCCCchHHHHHHHHHHHHHHHH---------hhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 1111 11125666666666654211 12258999999999999999987654
No 129
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.99 E-value=1.5e-05 Score=84.65 Aligned_cols=37 Identities=22% Similarity=0.375 Sum_probs=33.2
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRL 896 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~ 896 (1619)
.+|.+.|++|+||+|.++.|++++|++++|++.+...
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~ 38 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELA 38 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECCCHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCcccccc
Confidence 3678889999999999999999999999999877663
No 130
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.98 E-value=5.3e-05 Score=83.15 Aligned_cols=157 Identities=16% Similarity=0.170 Sum_probs=89.3
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
.++.+.|++|+||+|.++.++..+|+.++|.+.+.+.........|+...+.....
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g~~~i~~d~~~~~~~~~~~~~g~~~~~~~~~~------------------------ 85 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRWP------------------------ 85 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEEEGGGGSCHHHHHHHHTTCCCCHHHHHH------------------------
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEEcccccccHHHHHHHhcCCCCCCccccc------------------------
Confidence 46778899999999999999999999999998876543333334455443221110
Q ss_pred cccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCe---eeecC---CCeEEEEEcCHHHHHHhchHHHH
Q psy14505 940 LIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGT---TVFPD---AFLKIFLTADIKQRTKRRYKQLM 1013 (1619)
Q Consensus 940 ~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~---~v~p~---a~~kifl~A~~e~Ra~Rr~~~l~ 1013 (1619)
..+.........+....++|++.--... -.+.+ ...-|||+||++++.+|. .
T Consensus 86 ------------------~~~~~~~~~~~~~~~g~~viid~~~~~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl----~ 143 (200)
T 4eun_A 86 ------------------WLRSLAEWMDARADAGVSTIITCSALKRTYRDVLREGPPSVDFLHLDGPAEVIKGRM----S 143 (200)
T ss_dssp ------------------HHHHHHHHHHHHHHTTCCEEEEECCCCHHHHHHHTTSSSCCEEEEEECCHHHHHHHH----T
T ss_pred ------------------HHHHHHHHHHHHHhcCCCEEEEchhhhHHHHHHHHHhCCceEEEEEeCCHHHHHHHH----H
Confidence 0010011111112233355555410000 00010 125599999999999993 2
Q ss_pred hcC-CCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhh
Q psy14505 1014 QKG-FSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFAT 1072 (1619)
Q Consensus 1014 ~~~-~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ 1072 (1619)
.++ ...+.+.+......+ .|+......++|||+. +++++++.|.+.+..
T Consensus 144 ~R~~~~~~~~~l~~~~~~~---------~~~~~~~~~~~Id~~~-~~~e~~~~I~~~l~~ 193 (200)
T 4eun_A 144 KREGHFMPASLLQSQLATL---------EALEPDESGIVLDLRQ-PPEQLIERALTWLDI 193 (200)
T ss_dssp TCSCCSSCGGGHHHHHHHC---------CCCCTTSCEEEEETTS-CHHHHHHHHHHHHCC
T ss_pred hcccCCCCHHHHHHHHHHh---------CCCCCCCCeEEEECCC-CHHHHHHHHHHHHHh
Confidence 222 222333333333332 2333334578999986 999999999877653
No 131
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.89 E-value=4.1e-05 Score=84.00 Aligned_cols=168 Identities=17% Similarity=0.154 Sum_probs=93.1
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCcccc
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVT 938 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 938 (1619)
.++|.+.|++|+||+|.++.|++++|++++|++.+.|.. ...+-. ....+.+...+ |+.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~----~~~~~~--~g~~i~~~~~~-------------g~~~- 79 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRN----IEEGTK--LGVEAKRYLDA-------------GDLV- 79 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHH----HHTTCH--HHHHHHHHHHH-------------TCCC-
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHH----HHcCCh--HHHHHHHHHHc-------------CCcc-
Confidence 457888999999999999999999999999999988832 121110 01112121110 1100
Q ss_pred ccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCe-------eeec----CCCeEEEEEcCHHHHHHh
Q psy14505 939 TLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGT-------TVFP----DAFLKIFLTADIKQRTKR 1007 (1619)
Q Consensus 939 ~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~-------~v~p----~a~~kifl~A~~e~Ra~R 1007 (1619)
....+...+.+.....+..+++|++|-.... -++. ..++-|||+||++++.+|
T Consensus 80 ----------------~~~~~~~~~~~~~~~~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~R 143 (201)
T 2cdn_A 80 ----------------PSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLER 143 (201)
T ss_dssp ----------------CHHHHHHHHHHHTTSGGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHH
T ss_pred ----------------cHHHHHHHHHHHHhcccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHH
Confidence 0001122222222223445678988742210 0111 135889999999999999
Q ss_pred chHHHHhcCCCCCHHHHHHHHHhhhhhcccCC--CCCCCCCCCceEEccCcccchhhhhhhhhhhh
Q psy14505 1008 RYKQLMQKGFSVSMSDLLINLIKRDIRDKTRN--LSPLKCPEQAHLLNTSKMNINQVVNQILDCFA 1071 (1619)
Q Consensus 1008 r~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~--~~~l~~~~dal~Idts~l~ieevv~~I~~~i~ 1071 (1619)
...+ .+...+.+.+.+.+..-. ..+. ...| ....++||++ .+++++++.|.+.+.
T Consensus 144 l~~R---~r~~~~~e~~~~r~~~~~---~~~~~~~~~~--~~~~~~Id~~-~~~eev~~~I~~~l~ 200 (201)
T 2cdn_A 144 LKGR---GRADDTDDVILNRMKVYR---DETAPLLEYY--RDQLKTVDAV-GTMDEVFARALRALG 200 (201)
T ss_dssp HHHH---CCTTCSHHHHHHHHHHHH---HHTTTHHHHT--TTTEEEEECC-SCHHHHHHHHHHHTT
T ss_pred HHcC---CCCCCCHHHHHHHHHHHH---HhhHHHHHHh--cCcEEEEeCC-CCHHHHHHHHHHHHc
Confidence 4332 122234555544433211 1110 0011 2345789986 699999999877653
No 132
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.78 E-value=6.2e-05 Score=81.44 Aligned_cols=158 Identities=18% Similarity=0.214 Sum_probs=86.1
Q ss_pred cEEEecCCcCCCCchhHHHHHHH-hCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCcccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASK-LGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVT 938 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~-l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 938 (1619)
..|.+.|++|+||+|+++.|+++ +|++++|++.+.+.. .+... +.+. +.
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~~-------~~~~~----~~~~-------~~------------ 60 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKEN-------HFYTE----YDTE-------LD------------ 60 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHHT-------TCSCC-----------------------------
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHHh-------hhhhh----HHHH-------hh------------
Confidence 46778899999999999999999 899999999887731 11100 0000 00
Q ss_pred ccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeeecC--CCeEEEEEcCHHHHHHhchHHHHhcC
Q psy14505 939 TLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFPD--AFLKIFLTADIKQRTKRRYKQLMQKG 1016 (1619)
Q Consensus 939 ~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~p~--a~~kifl~A~~e~Ra~Rr~~~l~~~~ 1016 (1619)
..++. . .....+.+.+. .-+...++.|+++... -.|+. .+.-|||+||++++.+| +..++
T Consensus 61 ~~~~~----r-----~~~~~~~~~l~---~~~~~~g~~vi~~~~~--~~~~~~~~~~vi~l~~~~e~~~~R----l~~R~ 122 (184)
T 1y63_A 61 THIIE----E-----KDEDRLLDFME---PIMVSRGNHVVDYHSS--ELFPERWFHMVVVLHTSTEVLFER----LTKRQ 122 (184)
T ss_dssp CCCCC----H-----HHHHHHHHHHH---HHHTSSSEEEEECSCC--TTSCGGGCSEEEEEECCHHHHHHH----HHHTT
T ss_pred hcccC----C-----CCHHHHHHHHH---HHHhccCCEEEeCchH--hhhhhccCCEEEEEECCHHHHHHH----HHhCC
Confidence 00000 0 00111222222 2232456778887522 23443 46889999999999999 33333
Q ss_pred CCCCHHHHHHHHHhh--hhhcccCCCCCCCCCCCceEEccCcccchhh---hhhhhhhhh
Q psy14505 1017 FSVSMSDLLINLIKR--DIRDKTRNLSPLKCPEQAHLLNTSKMNINQV---VNQILDCFA 1071 (1619)
Q Consensus 1017 ~~~~~~~~~~~i~~r--D~~d~~r~~~~l~~~~dal~Idts~l~ieev---v~~I~~~i~ 1071 (1619)
. +...+...+... +.....|. ..|. ++++||+++.+++++ ++.|++.+.
T Consensus 123 ~--~~~~~~~~~~~q~~~~l~~~~~-~~y~---~~~vi~~n~~~~~~~~~~v~~i~~~l~ 176 (184)
T 1y63_A 123 Y--SEAKRAENMEAEIQCICEEEAR-DAYE---DDIVLVRENDTLEQMAATVEEIRERVE 176 (184)
T ss_dssp C--CHHHHHHHHHHHHTTHHHHHHH-HHSC---GGGEEEEECSSHHHHHHHHHHHHHHHH
T ss_pred C--ChhhhHhhHHHHHHHHHHHHHH-HHhc---cCcEEECCCCCHHHHHHHHHHHHHHHH
Confidence 3 444443332110 00000010 0121 246788777899999 555554443
No 133
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=97.76 E-value=2.8e-05 Score=85.64 Aligned_cols=188 Identities=12% Similarity=0.079 Sum_probs=104.4
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEe-CCccc
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYL-NGVNV 937 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v 937 (1619)
+..|.+.|..||||+|+++.+++ +|++++|++.+-|.+ .+.|-. -..++.+. .+-. ++. ||. +
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l----~~~~~~--~~~~i~~~---fG~~-----~~~~dg~-l 72 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRI----TAPAGL--AMPAIEQT---FGPA-----FVAADGS-L 72 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHH----TSTTCT--THHHHHHH---HCGG-----GBCTTSS-B
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHH----hcCCcH--HHHHHHHH---hChh-----hcCCCCC-C
Confidence 45677789999999999999988 999999999888733 233221 11222221 1111 111 121 1
Q ss_pred cc-cccccccccccc----cccccHHHHHHHHHHHHhhhcCCCeEEeccccCe--eeecCCCeEEEEEcCHHHHHHhchH
Q psy14505 938 TT-LIRNEKVSNNAS----KIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGT--TVFPDAFLKIFLTADIKQRTKRRYK 1010 (1619)
Q Consensus 938 ~~-~ir~~~~~~~~s----~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~--~v~p~a~~kifl~A~~e~Ra~Rr~~ 1010 (1619)
.. .|+..-.+.... .--.+|.|++.+.+.+.+ +..+-||+|.-..-. -..+..+..||++||++.|.+|..
T Consensus 73 dR~~L~~~vF~d~~~~~~L~~i~HP~I~~~~~~~~~~-~~~~~vv~d~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~- 150 (210)
T 4i1u_A 73 DRARMRALIFSDEDARRRLEAITHPLIRAETEREARD-AQGPYVIFVVPLLVESRNWKARCDRVLVVDCPVDTQIARVM- 150 (210)
T ss_dssp CHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-CCSSSEEEECTTCTTCHHHHHHCSEEEEEECCHHHHHHHHH-
T ss_pred cHHHHHHHHhCCHHHHHHHHHHhhHHHHHHHHHHHHh-cCCCEEEEEEecccccCCccccCCeEEEEECCHHHHHHHHH-
Confidence 11 111111110000 012577777776655544 233456776642110 011125799999999999999933
Q ss_pred HHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhhhh
Q psy14505 1011 QLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLFK 1075 (1619)
Q Consensus 1011 ~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ll~ 1075 (1619)
++.+.+.+++.+.+... .-+..+ ....| ++||++.-+++++...+..++..++.
T Consensus 151 ----~Rdg~s~eea~~ri~~Q-~~~eek-----~~~AD-~VIdN~~gsle~l~~qV~~l~~~~~~ 204 (210)
T 4i1u_A 151 ----QRNGFTREQVEAIIARQ-ATREAR-----LAAAD-DVIVNDAATPDALAVQVDALHQRYLA 204 (210)
T ss_dssp ----HHHCCCHHHHHHHHHHS-CCHHHH-----HHTCS-EEEECSSCCHHHHHHHHHHHHHHHHH
T ss_pred ----hcCCCCHHHHHHHHHHc-CChHHH-----HHhCC-EEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 33356999988866542 111111 11112 66787733899988888776665543
No 134
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.73 E-value=4.7e-05 Score=84.94 Aligned_cols=37 Identities=35% Similarity=0.557 Sum_probs=34.4
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRL 896 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~ 896 (1619)
+.|.+.|++|+||+|.++.||+++|++++|+|.++|.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~ 42 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRA 42 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHH
Confidence 4678889999999999999999999999999999994
No 135
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.72 E-value=5.9e-05 Score=83.63 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=33.4
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHH
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRL 896 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~ 896 (1619)
.|.+.|++|+||+|.++.|++++|++++|+|.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~ 37 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHH
Confidence 467789999999999999999999999999999994
No 136
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.70 E-value=8.7e-05 Score=79.78 Aligned_cols=32 Identities=28% Similarity=0.508 Sum_probs=24.8
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCCEEe-ch
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGFHYL-DS 890 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~~~~-dt 890 (1619)
.++|.+.|.+|+||+|.++.|++++|++++ |.
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d~ 37 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFVFEP 37 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEECCT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEEEch
Confidence 357888999999999999999999999999 63
No 137
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.70 E-value=0.00022 Score=76.20 Aligned_cols=36 Identities=33% Similarity=0.405 Sum_probs=32.2
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr 895 (1619)
.++.+.|++|+||+|.++.++..+|+.++|++.+.+
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~~d~~~~ 44 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHP 44 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHTCEEEEGGGGCC
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhCcEEEeCccccc
Confidence 467788999999999999999999999999987754
No 138
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.69 E-value=7.8e-05 Score=82.66 Aligned_cols=36 Identities=25% Similarity=0.530 Sum_probs=33.3
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHH
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRL 896 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~ 896 (1619)
.|.+.|++|+||+|.++.|++++|++++|+|.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~ 37 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRA 37 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHH
Confidence 466789999999999999999999999999999994
No 139
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.68 E-value=0.00012 Score=81.24 Aligned_cols=172 Identities=21% Similarity=0.266 Sum_probs=93.1
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNVTT 939 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 939 (1619)
.+|.+-|++|+||+|.++.|++++|+++++||.|+|+ +.+.+-. .-..+.+... .|+-|++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~----~i~~~t~--lg~~~~~~~~-------------~G~lVpd 90 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRA----EVQSGSP--KGKELKAMME-------------RGELVPL 90 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHH----HHTTCCH--HHHHHHHHHH-------------HTCCCCH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHH----HHHcCCc--hHHHHHHHHh-------------cCCCCCH
Confidence 4677779999999999999999999999999999993 3333210 0011111111 1221211
Q ss_pred cccccccccccccccccHHHHHHHHHHHHhh-hcCCCeEEec--cccCe------eeecCCCeEEEEEcCHHHHHHhchH
Q psy14505 940 LIRNEKVSNNASKIAKFKNIRKELFKIQVKF-RKFPGLVADG--RDMGT------TVFPDAFLKIFLTADIKQRTKRRYK 1010 (1619)
Q Consensus 940 ~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~-a~~~~~V~~G--Rd~~~------~v~p~a~~kifl~A~~e~Ra~Rr~~ 1010 (1619)
+ -+...+.+.+.+. ....++|+|| |.+.. .+. ..++-|||.++.++..+|...
T Consensus 91 e-----------------~~~~lv~~~l~~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~-~~~~vi~l~v~~e~~~~Rl~~ 152 (217)
T 3umf_A 91 E-----------------VVLALLKEAMIKLVDKNCHFLIDGYPRELDQGIKFEKEVC-PCLCVINFDVSEEVMRKRLLK 152 (217)
T ss_dssp H-----------------HHHHHHHHHHHHHTTTCSEEEEETBCSSHHHHHHHHHHTC-CCSEEEEEECCHHHHHHHHSC
T ss_pred H-----------------HHHHHHHHHHhhccccccCcccccCCCcHHHHHHHHHhCC-ccCEEEeccCCHHHHHHHHhc
Confidence 1 2222233333232 3445799999 33221 111 235789999999999999433
Q ss_pred HHHhcCCCCCHHHHHHHHHhhh--hhcccCC-CCCCCCCCCceEEccCcccchhhhhhhhhhhhh
Q psy14505 1011 QLMQKGFSVSMSDLLINLIKRD--IRDKTRN-LSPLKCPEQAHLLNTSKMNINQVVNQILDCFAT 1072 (1619)
Q Consensus 1011 ~l~~~~~~~~~~~~~~~i~~rD--~~d~~r~-~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ 1072 (1619)
+....+ -+ ++-.+.+++|= +.+.+.. +..|....-...||.+. ++|+|.+.|.+.+++
T Consensus 153 R~~~~~--R~-DD~~e~i~~Rl~~Y~~~t~pl~~~Y~~~~~l~~Idg~~-~~eeV~~~I~~~l~k 213 (217)
T 3umf_A 153 RAETSN--RV-DDNEETIVKRFRTFNELTKPVIEHYKQQNKVITIDASG-TVDAIFDKVNHELQK 213 (217)
T ss_dssp C--------C-HHHHHHHHHHHHHHHHHTHHHHHHHHTTTCEEEEETTS-CHHHHHHHHHHHHHT
T ss_pred ccccCC--CC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcCCEEEEECCC-CHHHHHHHHHHHHHH
Confidence 311111 11 11222333331 1111110 11122223347799885 999999999876653
No 140
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.66 E-value=0.00013 Score=80.99 Aligned_cols=38 Identities=26% Similarity=0.478 Sum_probs=35.0
Q ss_pred cccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHH
Q psy14505 858 YIPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895 (1619)
Q Consensus 858 ~~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr 895 (1619)
..+.|.+.|.+|+||+|.++.||+++|++++|+|.+.|
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~ 41 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLR 41 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHH
Confidence 44678888999999999999999999999999999988
No 141
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.60 E-value=0.00018 Score=91.43 Aligned_cols=164 Identities=16% Similarity=0.240 Sum_probs=88.3
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhC------CEEechhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEe
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLG------FHYLDSGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYL 932 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~------~~~~dtg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1619)
.++|.+.|.+||||+|+++.|+++|+ +.++|.+.+++.+ ..+....+.+... .......
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l-----~~~~~f~~~er~~-~i~ri~~--------- 460 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL-----SSELGFTREDRHT-NIQRIAF--------- 460 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT-----CTTCCCSHHHHHH-HHHHHHH---------
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh-----ccccCCChhHHHH-HHHHHHH---------
Confidence 35788899999999999999999987 4788888776631 2222222222110 0000000
Q ss_pred CCccccccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCeeeecCCCeEEEEEcCHHHHHHhchHHH
Q psy14505 933 NGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGTTVFPDAFLKIFLTADIKQRTKRRYKQL 1012 (1619)
Q Consensus 933 ~~~~v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~~v~p~a~~kifl~A~~e~Ra~Rr~~~l 1012 (1619)
+...+......-.++.++..+..|+...+++++ . +. .+.|||+||++++.+|+.+.|
T Consensus 461 ----v~~~~~~~g~~VI~~~is~~~~~R~~~r~l~~~----~---------g~------~~~V~Lda~~ev~~~R~~r~l 517 (573)
T 1m8p_A 461 ----VATELTRAGAAVIAAPIAPYEESRKFARDAVSQ----A---------GS------FFLVHVATPLEHCEQSDKRGI 517 (573)
T ss_dssp ----HHHHHHHTTCEEEEECCCCCHHHHHHHHHHHHT----T---------SE------EEEEEECCCHHHHHHHCSSCH
T ss_pred ----HHHHHHhCCCEEEEEcCCCcHHHHHHHHHHHHh----c---------CC------eEEEEEeCCHHHHHHHhcccc
Confidence 000000000000011223334444443332221 1 11 256999999999999954322
Q ss_pred HhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCC-CCCceEEccCcccchhhhhhhhhhhhh
Q psy14505 1013 MQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKC-PEQAHLLNTSKMNINQVVNQILDCFAT 1072 (1619)
Q Consensus 1013 ~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~-~~dal~Idts~l~ieevv~~I~~~i~~ 1072 (1619)
. ++. ...+.....+..+||.. ...+++|||+.++++++++.|++++..
T Consensus 518 ~--------~~~----~~~~i~~~~~~r~~~~~p~~~dl~IDts~~s~eevv~~Il~~l~~ 566 (573)
T 1m8p_A 518 Y--------AAA----RRGEIKGFTGVDDPYETPEKADLVVDFSKQSVRSIVHEIILVLES 566 (573)
T ss_dssp H--------HHH----HTTSSSSCBTTTBCCCCCSSCSEEECTTTSCHHHHHHHHHHHHHH
T ss_pred h--------hhh----hHHHHHHHHhccccccccCCCCEEEECCCCCHHHHHHHHHHHHHh
Confidence 1 111 11112222233456653 455799999999999999999887653
No 142
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.60 E-value=0.00012 Score=80.66 Aligned_cols=36 Identities=33% Similarity=0.616 Sum_probs=33.5
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHH
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRL 896 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~ 896 (1619)
+|.+-|++|+||+|.++.|++++|++|++||.|+|+
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~ 37 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILRE 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHH
Confidence 566779999999999999999999999999999994
No 143
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.59 E-value=7.3e-05 Score=96.10 Aligned_cols=72 Identities=19% Similarity=0.141 Sum_probs=61.5
Q ss_pred ccce--EEEEEEEEEecceEEEeeC-CCeEEEEeCCCCCC--CCCc-----c----ccccCCCCCCEEEEEEEEeecCCC
Q psy14505 1427 KKGE--KIKGIIKSITDFGIFIGLD-GNIDGLIHLSDLSW--TDPG-----E----EIIRNFKKGDEIEAIILSIDVEKE 1492 (1619)
Q Consensus 1427 ~vG~--~v~G~V~~i~~~GvfV~~~-~~v~Glv~~sels~--~~~~-----~----~~~~~f~vGq~V~~~Vl~vd~e~~ 1492 (1619)
++|+ .+.|+|++++++|+||++. .|+.||||.+++++ +.+. . +....|++||.|+|+|.++|++++
T Consensus 557 ~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~~~ 636 (644)
T 2id0_A 557 KAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRMETR 636 (644)
T ss_dssp GTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETTTT
T ss_pred ccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCCCC
Confidence 6899 9999999999999999994 68999999999973 1110 0 334679999999999999999999
Q ss_pred eEEEee
Q psy14505 1493 RISLGI 1498 (1619)
Q Consensus 1493 ri~LSl 1498 (1619)
+|.|++
T Consensus 637 ~I~~~l 642 (644)
T 2id0_A 637 SIIARP 642 (644)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999987
No 144
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.58 E-value=9.1e-05 Score=82.92 Aligned_cols=38 Identities=34% Similarity=0.482 Sum_probs=35.1
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHH
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRL 896 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~ 896 (1619)
.+.|.+.|+.|+||+|.++.|++++|++++|+|.++|.
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 44 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRD 44 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHH
Confidence 35788899999999999999999999999999999984
No 145
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.52 E-value=0.00021 Score=77.08 Aligned_cols=37 Identities=38% Similarity=0.636 Sum_probs=34.0
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRL 896 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~ 896 (1619)
+.|.+.|++|+||+|.++.|++++|++++|+|.++|.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~ 41 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRD 41 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHH
Confidence 4678889999999999999999999999999998884
No 146
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.52 E-value=0.00032 Score=78.80 Aligned_cols=40 Identities=28% Similarity=0.352 Sum_probs=35.7
Q ss_pred cccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHHH
Q psy14505 858 YIPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRLV 897 (1619)
Q Consensus 858 ~~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~~ 897 (1619)
..+.|.+.|..|+||+|.++.|++++|++|+|++.+.|..
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~ 54 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAM 54 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHH
Confidence 3457888999999999999999999999999999998843
No 147
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.50 E-value=0.0003 Score=78.20 Aligned_cols=37 Identities=27% Similarity=0.416 Sum_probs=34.5
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRL 896 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~ 896 (1619)
+.|.+.|++|+||+|.++.||+++|++++|+|.+.|.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~ 41 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRS 41 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHH
Confidence 5688889999999999999999999999999999984
No 148
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=97.50 E-value=0.00021 Score=79.25 Aligned_cols=86 Identities=22% Similarity=0.313 Sum_probs=69.4
Q ss_pred CCCCeEEEEEEE----EeccEEEEEeCC---CeEEEEecccccccCCCccccCCCEEEEEEEEEeCC--CCeEEEehHHH
Q psy14505 1084 RSGEVISAEVIG----LDRNFVIINADL---KSEAFIPIEEFKNDNGELEVKIGDFVSVAIESLENG--FGDTILSRDKA 1154 (1619)
Q Consensus 1084 ~~G~iv~G~V~~----v~~~gv~V~lg~---~~~Gfi~~~e~~~~~~~~~~kvG~~v~~~V~~v~~~--~~~v~LS~~~~ 1154 (1619)
+.|++|+|+|.+ ++++.++|++|. +.+|+||.+|.. +.+.|++||.++|+|.+++.. +..+.||+...
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi---p~E~~~~GDrIkayV~~V~~~~~gpqIiLSRt~p 82 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV---PGESYEHGNRLRCYVVGVTRGAREPLITLSRTHP 82 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC---TTCCCCTTCEEEEEEEEEECCSSSCEEEEESSCH
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC---CCccCCCCCEEEEEEEEEEcCCCCCEEEEEeccH
Confidence 589999999999 899999999997 699999999985 345799999999999999875 46899999877
Q ss_pred HHHHhHHHHHH-HccCCCE
Q psy14505 1155 KRLASWLSLEK-AMESGEI 1172 (1619)
Q Consensus 1155 ~~~~~~~~~~~-~l~~G~~ 1172 (1619)
.....|.+.+= .+..|.+
T Consensus 83 ~lvk~Lfe~EVPEI~dG~v 101 (251)
T 2asb_A 83 NLVRKLFSLEVPEIADGSV 101 (251)
T ss_dssp HHHHHHHHHHCHHHHTTSE
T ss_pred HHHHHHHHhcchHhhcCeE
Confidence 66666655420 1345654
No 149
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.49 E-value=0.00045 Score=73.80 Aligned_cols=158 Identities=15% Similarity=0.075 Sum_probs=83.4
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEec--hhhHHHHHHHHHHHcCCCCCcHHHHHHHHHcccceecCceEEeCCccc
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLD--SGALYRLVTLSAINNNIQLDNELELVILIKKLNYNFLGKEVYLNGVNV 937 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~d--tg~~yr~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 937 (1619)
.+|.+.|++|+||+|+++.|+++++.+|++ +..+.....- + ...+ ..++.+.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~~~---~--~~~~----------~~~~~~~----------- 57 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPL---K--MQSA----------EGGIEFD----------- 57 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHSCG---G--GGTS----------TTSEEEC-----------
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhcch---h--hccc----------hhhcccc-----------
Confidence 357778999999999999999999988775 4433220000 0 0000 0001110
Q ss_pred cccccccccccccccccccHHHH---HHHHHHHHhhhcCC-CeEEeccccC--e------eeecCCC-eEEEEEcCHHHH
Q psy14505 938 TTLIRNEKVSNNASKIAKFKNIR---KELFKIQVKFRKFP-GLVADGRDMG--T------TVFPDAF-LKIFLTADIKQR 1004 (1619)
Q Consensus 938 ~~~ir~~~~~~~~s~~a~~~~vr---~~~~~~~r~~a~~~-~~V~~GRd~~--~------~v~p~a~-~kifl~A~~e~R 1004 (1619)
+. . .....+.+| ..+....+++...+ ++|+++--.. . -.+++.+ +-|||+||+++.
T Consensus 58 -~~------~----~~~~~~~~~~~~~~~~~~~~~~~~~g~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~e~l 126 (178)
T 1qhx_A 58 -AD------G----GVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRCDGAVA 126 (178)
T ss_dssp -TT------S----CEEECHHHHHHHHHHHHHHHHHHHTTCEEEEEECCTTTHHHHHHHHHHHTTCCEEEEEEECCHHHH
T ss_pred -CC------C----ccccchhHHHHHHHHHHHHHHHHhcCCeEEEEeccccChHHHHHHHHHhcCCcEEEEEEECCHHHH
Confidence 00 0 001112222 22223344554444 6888873111 0 0123344 578999999999
Q ss_pred HHhchHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhh
Q psy14505 1005 TKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCF 1070 (1619)
Q Consensus 1005 a~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i 1070 (1619)
.+|.. .++. .+...... ..+.-. ++ ...+++|||+.++++++++.|++.+
T Consensus 127 ~~R~~----~r~~-~~~~~~~~------~~~~~~---~~--~~~d~~idt~~~~~~~~~~~I~~~l 176 (178)
T 1qhx_A 127 EGRET----ARGD-RVAGMAAK------QAYVVH---EG--VEYDVEVDTTHKESIECAWAIAAHV 176 (178)
T ss_dssp HHHHH----HTSS-SCTTHHHH------HTTGGG---TT--CCCSEEEETTSSCHHHHHHHHHTTC
T ss_pred HHHHH----hhCC-cccchhhh------hchhhc---cC--CCCcEEEECCCCCHHHHHHHHHHHh
Confidence 99932 2332 12221111 111111 11 1245899999999999999998764
No 150
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.48 E-value=0.0014 Score=70.71 Aligned_cols=36 Identities=31% Similarity=0.460 Sum_probs=32.2
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr 895 (1619)
.+|.+.|.+|+||+|.++.|++++|++++|++.+..
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~D~~~~ 41 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLSKDAFKE 41 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEecHHHHHH
Confidence 467888999999999999999999999999877654
No 151
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.45 E-value=0.00017 Score=79.08 Aligned_cols=64 Identities=27% Similarity=0.262 Sum_probs=54.1
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCc------------------cccccCCCCCCEEEEEEEEee
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPG------------------EEIIRNFKKGDEIEAIILSID 1488 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~------------------~~~~~~f~vGq~V~~~Vl~vd 1488 (1619)
.+|+++.|+|++++++|+||++ +.++|++|.+++.++.+. ++....|++||.|+++|.+++
T Consensus 80 ~~GEv~~G~Vs~vt~~GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v~ 158 (203)
T 3ayh_B 80 FRGEVMLGKIKSCSEEGIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESED 158 (203)
T ss_dssp CTTCEEEEEEEEEETTEEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEEE
T ss_pred CCCCEEEEEEEEEeccEEEEEE-eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEEE
Confidence 5799999999999999999999 679999999999854320 334567999999999999999
Q ss_pred cCC
Q psy14505 1489 VEK 1491 (1619)
Q Consensus 1489 ~e~ 1491 (1619)
...
T Consensus 159 ~~~ 161 (203)
T 3ayh_B 159 FVD 161 (203)
T ss_dssp ECC
T ss_pred ccc
Confidence 743
No 152
>2id0_A Exoribonuclease 2; RNAse, exonuclease, hydrolyase, mRNA decay, RNR family, hydrolase; 2.35A {Escherichia coli} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16 PDB: 2ix0_A* 2ix1_A
Probab=97.45 E-value=0.00019 Score=92.19 Aligned_cols=74 Identities=16% Similarity=0.311 Sum_probs=62.5
Q ss_pred ccccce--eEEEEEEEEcCCeEEEEE-cCCEEEEEeccccCc----cccC-------CCccccccCCCEEEEEEEEeecc
Q psy14505 1338 RYPRGT--RLLGKVTNLTDYGAFVEI-EKGIEGLVHISEMDW----INKN-------VTPSKIVQLNDTVEIMILEINEE 1403 (1619)
Q Consensus 1338 ~l~~G~--iv~g~V~~v~~~G~fV~l-~~gv~GlV~~sels~----~~~~-------~~~~~~~~vG~~V~vrVl~id~e 1403 (1619)
.-++|+ .+.|+|++++++|+||++ ..|++|+||.++|++ .... .+....|++||.|+|+|..+|.+
T Consensus 555 ~~~vGe~~~f~g~V~~V~~~G~fV~L~~~gieGlVhis~l~~~~d~~~~d~~~~~l~~~~~~~~~lGD~V~VkV~~vd~~ 634 (644)
T 2id0_A 555 KDKAGTDTRFAAEIVDISRGGMRVRLVDNGAIAFIPAPFLHAVRDELVCSQENGTVQIKGETVYKVTDVIDVTIAEVRME 634 (644)
T ss_dssp GGGTTSCCCEEEEEEEEETTEEEEEETTTCCEEEEEGGGTCSCGGGEEEETTTTEEEETTEEEEETTCEEEEEEEEEETT
T ss_pred hhccCCCceEEEEEEEEeCCceEEEEcCCcEEEEEEchhccCcCceeEEcccccEEEecCCCEeCCCCEEEEEEEEEeCC
Confidence 457899 999999999999999999 468999999999952 1110 04457899999999999999999
Q ss_pred cceEEEee
Q psy14505 1404 RRRISLGM 1411 (1619)
Q Consensus 1404 ~~ri~LSl 1411 (1619)
+++|.+++
T Consensus 635 ~~~I~~~l 642 (644)
T 2id0_A 635 TRSIIARP 642 (644)
T ss_dssp TTEEEEEE
T ss_pred CCEEEEEE
Confidence 99999986
No 153
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.44 E-value=0.00012 Score=83.12 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=35.2
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHH
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRL 896 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~ 896 (1619)
.+.|.+.|++|+||+|.++.|++++|++++|+|.+.|.
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~ 66 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLRE 66 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHH
Confidence 45788889999999999999999999999999999994
No 154
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.37 E-value=0.00022 Score=78.79 Aligned_cols=66 Identities=23% Similarity=0.175 Sum_probs=54.9
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCc-------------cccccCCCCCCEEEEEEEEeecCCC
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPG-------------EEIIRNFKKGDEIEAIILSIDVEKE 1492 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~-------------~~~~~~f~vGq~V~~~Vl~vd~e~~ 1492 (1619)
.+|+++.|+|++++++|+||++.+.++|++|.+++.++.+. ++-...|++||.|+++|.++|...+
T Consensus 80 ~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~~ 158 (218)
T 2ckz_B 80 FLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVDV 158 (218)
T ss_dssp CTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECCC
T ss_pred CCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEcccC
Confidence 57999999999999999999997789999999999743321 2335569999999999999997654
No 155
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=97.36 E-value=8.1e-05 Score=86.14 Aligned_cols=75 Identities=15% Similarity=0.186 Sum_probs=61.1
Q ss_pred ccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCcccc---CC------CccccccCCCEEEEEEEEeecccceEE
Q psy14505 1338 RYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINK---NV------TPSKIVQLNDTVEIMILEINEERRRIS 1408 (1619)
Q Consensus 1338 ~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~---~~------~~~~~~~vG~~V~vrVl~id~e~~ri~ 1408 (1619)
..++||+|.|+|+.+.++|+||+++....|++|.+++++... .. +....|++||.|.|+|++++ ++..+.
T Consensus 92 ~P~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~-~~~~i~ 170 (308)
T 2nn6_H 92 IGEVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVF-SDGAVS 170 (308)
T ss_dssp CCCSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEE-TTTEEE
T ss_pred CCCCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcC-CCCCEE
Confidence 478999999999999999999999877899999999875211 11 23468999999999999999 466899
Q ss_pred Eeeec
Q psy14505 1409 LGMKQ 1413 (1619)
Q Consensus 1409 LSlK~ 1413 (1619)
||+|.
T Consensus 171 LStr~ 175 (308)
T 2nn6_H 171 LHTRS 175 (308)
T ss_dssp EECCS
T ss_pred EEecC
Confidence 99884
No 156
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=97.33 E-value=0.0011 Score=71.57 Aligned_cols=36 Identities=22% Similarity=0.258 Sum_probs=32.6
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhC-----CEEechhhHHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLG-----FHYLDSGALYR 895 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~-----~~~~dtg~~yr 895 (1619)
++|.+.|++|+||+|.++.|+++++ +.++|+|...+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~ 42 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFML 42 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHH
Confidence 4678889999999999999999999 99999888776
No 157
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.31 E-value=0.00029 Score=86.71 Aligned_cols=80 Identities=14% Similarity=0.146 Sum_probs=67.9
Q ss_pred ccccceeEEEEEEEEcCC--eEEEEEcCCEEEEEeccccCcccc--------CCCccccccCCCEEEEEEEEeecccceE
Q psy14505 1338 RYPRGTRLLGKVTNLTDY--GAFVEIEKGIEGLVHISEMDWINK--------NVTPSKIVQLNDTVEIMILEINEERRRI 1407 (1619)
Q Consensus 1338 ~l~~G~iv~g~V~~v~~~--G~fV~l~~gv~GlV~~sels~~~~--------~~~~~~~~~vG~~V~vrVl~id~e~~ri 1407 (1619)
...+|.++.|+|+++.++ |+||+++++..||+|.++++|... ..++.+.+++||+|.|.|+.....++.-
T Consensus 42 ~~~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa 121 (517)
T 2bx2_L 42 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGA 121 (517)
T ss_dssp CCCTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCC
T ss_pred cCCCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCc
Confidence 467999999999999999 999999999999999999987321 2245577999999999999988888888
Q ss_pred EEeeecccCC
Q psy14505 1408 SLGMKQCKDN 1417 (1619)
Q Consensus 1408 ~LSlK~~~~~ 1417 (1619)
.||..-+.+.
T Consensus 122 ~lTt~isl~G 131 (517)
T 2bx2_L 122 ALTTFISLAG 131 (517)
T ss_dssp EEESSCCEEC
T ss_pred eEEeeEEecc
Confidence 8888766544
No 158
>3ayh_B DNA-directed RNA polymerase III subunit RPC8; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=97.30 E-value=0.00033 Score=76.87 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=53.8
Q ss_pred cccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCcccc------------C------CCccccccCCCEEEEEEEEe
Q psy14505 1339 YPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINK------------N------VTPSKIVQLNDTVEIMILEI 1400 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~------------~------~~~~~~~~vG~~V~vrVl~i 1400 (1619)
..+|+++.|+|++++++|+||++ +.++|++|.+++.+... . .+....|++|+.|++||.++
T Consensus 79 p~~GEv~~G~Vs~vt~~GifV~l-g~~eglv~~~~l~~d~~~fd~~~~~~v~~~~~~~~~~~~~~~~~~Gd~VrvrV~~v 157 (203)
T 3ayh_B 79 PFRGEVMLGKIKSCSEEGIRVTI-SFFDDIFIPKDMLFDPCVFRPDERAWVWKIEGEDGSEGTELYFDIDEEIRFQIESE 157 (203)
T ss_dssp CCTTCEEEEEEEEEETTEEEEEC-SSCCCEEEEGGGBCTTEEEEGGGTEEEEEECCCTTSCCEEEECCTTCEEEEEEEEE
T ss_pred cCCCCEEEEEEEEEeccEEEEEE-eCceEEEEcHHhCCCCceECccCceEEeecccccccccCCcEEcCCCEEEEEEEEE
Confidence 46899999999999999999999 58999999999954211 0 34466799999999999999
Q ss_pred eccc
Q psy14505 1401 NEER 1404 (1619)
Q Consensus 1401 d~e~ 1404 (1619)
+...
T Consensus 158 ~~~~ 161 (203)
T 3ayh_B 158 DFVD 161 (203)
T ss_dssp EECC
T ss_pred Eccc
Confidence 8643
No 159
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.27 E-value=0.00055 Score=78.34 Aligned_cols=35 Identities=23% Similarity=0.312 Sum_probs=30.0
Q ss_pred ccEEEecCCcCCCCchhHHHHHHH---hCCEEe--chhhH
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASK---LGFHYL--DSGAL 893 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~---l~~~~~--dtg~~ 893 (1619)
.++|.+.|.+|+||+|.++.|++. +|++++ |.+.+
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~ 43 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLI 43 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHH
Confidence 457888999999999999999998 899988 86544
No 160
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.27 E-value=8.2e-05 Score=87.14 Aligned_cols=79 Identities=13% Similarity=0.170 Sum_probs=61.3
Q ss_pred ccccccc--cceeEEEEEEE----EcCCeEEEEEcC---CEEEEEeccccCccccCCCccccccCCCEEEEEEEEeeccc
Q psy14505 1334 GLSFRYP--RGTRLLGKVTN----LTDYGAFVEIEK---GIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEER 1404 (1619)
Q Consensus 1334 ~~~~~l~--~G~iv~g~V~~----v~~~G~fV~l~~---gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~ 1404 (1619)
..+..|+ +|++|.|+|.+ +.+.++||+++. +++|++|.+++. |.+.|++||.|+|.|+.++.+.
T Consensus 121 ~i~~ef~~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~Eqi-------P~E~~~~GDrVkvyV~~V~~~~ 193 (366)
T 1k0r_A 121 RTYGEFSTREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV-------PGESYEHGNRLRCYVVGVTRGA 193 (366)
T ss_dssp ------CCCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSC-------TTCCCCTTCEEEEEEEEEECCS
T ss_pred HHHHHHHhcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcC-------CCccCCCCCEEEEEEEEEecCC
Confidence 3344555 99999999999 999999999975 499999999985 4689999999999999999886
Q ss_pred ceEEEeeecccCCCC
Q psy14505 1405 RRISLGMKQCKDNPW 1419 (1619)
Q Consensus 1405 ~ri~LSlK~~~~~~~ 1419 (1619)
+...+.+..+.++..
T Consensus 194 kgpqI~LSRT~p~lv 208 (366)
T 1k0r_A 194 REPLITLSRTHPNLV 208 (366)
T ss_dssp SSCEEEEESSCHHHH
T ss_pred CccEEEEEeCChHHH
Confidence 665555555544443
No 161
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=97.21 E-value=0.00083 Score=78.72 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=63.9
Q ss_pred CCCCCeEEEEEEE----EeccEEEEEeCC---CeEEEEecccccccCCCccccCCCEEEEEEEEEeCC--CCeEEEehHH
Q psy14505 1083 MRSGEVISAEVIG----LDRNFVIINADL---KSEAFIPIEEFKNDNGELEVKIGDFVSVAIESLENG--FGDTILSRDK 1153 (1619)
Q Consensus 1083 l~~G~iv~G~V~~----v~~~gv~V~lg~---~~~Gfi~~~e~~~~~~~~~~kvG~~v~~~V~~v~~~--~~~v~LS~~~ 1153 (1619)
-++|++|.|+|.+ +++++++|++|. +.+|+||.+|... .+.|++||.|+|+|.+++.. +..+.||+..
T Consensus 128 ~r~GeIVtG~V~r~~~~v~~~~v~VdLG~~~~k~EgiLP~~EqiP---~E~~~~GDrVkvyV~~V~~~~kgpqI~LSRT~ 204 (366)
T 1k0r_A 128 TREGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQVP---GESYEHGNRLRCYVVGVTRGAREPLITLSRTH 204 (366)
T ss_dssp CCTTCEEEEEEECCHHHHHTTCEEEEECCSSSCEEEEECGGGSCT---TCCCCTTCEEEEEEEEEECCSSSCEEEEESSC
T ss_pred hcCCCEEEEEEEEccccccCCeEEEEeCCCccceEEEEcHHHcCC---CccCCCCCEEEEEEEEEecCCCccEEEEEeCC
Confidence 4599999999999 999999999997 6999999999863 45799999999999999875 4579999876
Q ss_pred HHHHHhHHH
Q psy14505 1154 AKRLASWLS 1162 (1619)
Q Consensus 1154 ~~~~~~~~~ 1162 (1619)
......+..
T Consensus 205 p~lv~~Lfe 213 (366)
T 1k0r_A 205 PNLVRKLFS 213 (366)
T ss_dssp HHHHHHHHH
T ss_pred hHHHHHHHH
Confidence 544444433
No 162
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.14 E-value=0.0011 Score=71.37 Aligned_cols=34 Identities=32% Similarity=0.337 Sum_probs=28.1
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhC-----CEEechhhH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLG-----FHYLDSGAL 893 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~-----~~~~dtg~~ 893 (1619)
.+|.+.|..|+||+|.++.+++.++ +.++|...+
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4678889999999999999999886 577886443
No 163
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.14 E-value=0.0033 Score=67.83 Aligned_cols=30 Identities=30% Similarity=0.362 Sum_probs=27.9
Q ss_pred EEEecCCcCCCCchhHHHHHHHh---CCEEech
Q psy14505 861 VITIDGPTASGKGTVAQLVASKL---GFHYLDS 890 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l---~~~~~dt 890 (1619)
+|.+.|..|+||+|.++.|++++ |++++|+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~ 34 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLY 34 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57788999999999999999998 9999997
No 164
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.12 E-value=0.00038 Score=77.04 Aligned_cols=36 Identities=33% Similarity=0.565 Sum_probs=33.3
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHH
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRL 896 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~ 896 (1619)
.|.+.|++|+||+|.++.|++++|++++|+|.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~ 37 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRA 37 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHH
Confidence 467789999999999999999999999999999994
No 165
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.10 E-value=0.00091 Score=85.03 Aligned_cols=32 Identities=22% Similarity=0.247 Sum_probs=28.3
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHh---CCEEech
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKL---GFHYLDS 890 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l---~~~~~dt 890 (1619)
.++|.+.|.+|+||+|+++.|+++| |+++++.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 3568888999999999999999999 9988775
No 166
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=97.10 E-value=0.00092 Score=74.57 Aligned_cols=36 Identities=42% Similarity=0.655 Sum_probs=33.4
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHH
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRL 896 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~ 896 (1619)
.|.+.|+.|+||+|.++.|++++|++++++|.+.|.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~ 37 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFRE 37 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHH
Confidence 577889999999999999999999999999999883
No 167
>2bx2_L Ribonuclease E, RNAse E; RNA-binding, RNA turnover, RNA processing, hydrolase, endonu nuclease; 2.85A {Escherichia coli} PDB: 2c0b_L 2c4r_L 2vmk_A 2vrt_A 1slj_A 1smx_A 1sn8_A
Probab=97.08 E-value=0.00068 Score=83.50 Aligned_cols=77 Identities=18% Similarity=0.196 Sum_probs=66.1
Q ss_pred ccceEEEEEEEEEecc--eEEEeeCCCeEEEEeCCCCCCCCC--------ccccccCCCCCCEEEEEEEEeecCCCeEEE
Q psy14505 1427 KKGEKIKGIIKSITDF--GIFIGLDGNIDGLIHLSDLSWTDP--------GEEIIRNFKKGDEIEAIILSIDVEKERISL 1496 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~--GvfV~~~~~v~Glv~~sels~~~~--------~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~L 1496 (1619)
.+|.++.|+|+++.++ |+||+++++-.||+|.++++|... ..++.+.+++||.|.|+|+.....++.-.|
T Consensus 44 ~vGnIY~GkV~rv~p~~~aAFVdiG~gk~gfLhisei~~~~~~~~~~~~~~~~i~d~lk~Gq~VlVQV~Ke~~g~KGa~l 123 (517)
T 2bx2_L 44 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 123 (517)
T ss_dssp CTTCEEEEEEEEEETTTTEEEEESSSSSCEEEEGGGSCGGGCC-------CCCGGGTCCTTCEEEEEEEECCCTTCCCEE
T ss_pred CCCCEEEEEEEEeccCCceEEEEeCCCcEEEEEHHHcChhhhccccccccccchhhhccCCCEEEEEEEeeccccCCceE
Confidence 6899999999999999 999999999999999999986321 234667899999999999999988888888
Q ss_pred eeecCcC
Q psy14505 1497 GIKQLEG 1503 (1619)
Q Consensus 1497 SlK~~~~ 1503 (1619)
|..-+.+
T Consensus 124 Tt~isl~ 130 (517)
T 2bx2_L 124 TTFISLA 130 (517)
T ss_dssp ESSCCEE
T ss_pred EeeEEec
Confidence 8876543
No 168
>2ckz_B C25, DNA-directed RNA polymerase III 25 KD polypeptide; multiprotein complex, nucleotidyltransferase, nuclear protein, hypothetical protein; 3.2A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.00065 Score=75.10 Aligned_cols=68 Identities=12% Similarity=0.007 Sum_probs=54.3
Q ss_pred ccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCcccc------------C-CCccccccCCCEEEEEEEEeeccc
Q psy14505 1338 RYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINK------------N-VTPSKIVQLNDTVEIMILEINEER 1404 (1619)
Q Consensus 1338 ~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~------------~-~~~~~~~~vG~~V~vrVl~id~e~ 1404 (1619)
+..+|+++.|+|++++++|+||++.+.++|++|.+++..... . .+....|++||.|++||.+++..+
T Consensus 78 ~p~vGEv~~G~Is~Vt~fGifVeL~g~~eglv~~s~l~~d~~~fd~~~~~~vg~~~e~t~~~~~~Gd~VrvrV~~v~~~~ 157 (218)
T 2ckz_B 78 KPFLGEIVTGWISKCTAEGIKVSLLGIFDDIFIPQNMLFEGCYYTPEESAWIWPMDEETKLYFDVNEKIRFRIEREVFVD 157 (218)
T ss_dssp CCCTTCEEEEEEEEEETTEEEEECTTSCCCEEEETTTSCTTCEEETTTTEEEEECC--CEEEECTTCEEEEEEEEEEECC
T ss_pred cCCCCCEEEEEEEEEccCcEEEEccCccceEEEcHHHCCCCcEEcCcCceEEeeccccCCcEEcCCCEEEEEEEEEEccc
Confidence 356899999999999999999999667899999999942110 0 233567999999999999999655
Q ss_pred c
Q psy14505 1405 R 1405 (1619)
Q Consensus 1405 ~ 1405 (1619)
+
T Consensus 158 ~ 158 (218)
T 2ckz_B 158 V 158 (218)
T ss_dssp C
T ss_pred C
Confidence 4
No 169
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=97.06 E-value=0.0003 Score=91.95 Aligned_cols=70 Identities=21% Similarity=0.274 Sum_probs=52.3
Q ss_pred eEEEEEEEEEecceEEEeeCC-CeEEEEeCCCCC--CCCCc----------cc----cccCCCCCCEEEEEEEEeecC--
Q psy14505 1430 EKIKGIIKSITDFGIFIGLDG-NIDGLIHLSDLS--WTDPG----------EE----IIRNFKKGDEIEAIILSIDVE-- 1490 (1619)
Q Consensus 1430 ~~v~G~V~~i~~~GvfV~~~~-~v~Glv~~sels--~~~~~----------~~----~~~~f~vGq~V~~~Vl~vd~e-- 1490 (1619)
+.+.|+|++++++|+||.+.+ ++.|+||.++++ ++.+. .+ ....|++||.|+|+|..+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 799999999999999999988 899999999996 22110 12 246899999999999999988
Q ss_pred -CCeEEEeee
Q psy14505 1491 -KERISLGIK 1499 (1619)
Q Consensus 1491 -~~ri~LSlK 1499 (1619)
++||.||+|
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 799999986
No 170
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.05 E-value=0.002 Score=69.78 Aligned_cols=72 Identities=14% Similarity=0.254 Sum_probs=43.2
Q ss_pred CCeEEEEEcCHHHHHHhchHHHHhcCCCCCHHHHHHHHHhh-hhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhh
Q psy14505 991 AFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKR-DIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDC 1069 (1619)
Q Consensus 991 a~~kifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~r-D~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~ 1069 (1619)
.++.|||++|+++..+|...+ ...+.+++.+.+... ...... . ..+.++||++ .+++++++.|.+.
T Consensus 122 ~d~vi~l~~~~e~~~~Rl~~R-----~~~~~~~~~~~~~~~~~~~~~~-~------~~~~~~Id~~-~~~e~~~~~i~~~ 188 (197)
T 2z0h_A 122 PDLTFYIDVDVETALKRKGEL-----NRFEKREFLERVREGYLVLARE-H------PERIVVLDGK-RSIEEIHRDVVRE 188 (197)
T ss_dssp CSEEEEEECCHHHHHHHC--------CCCCCHHHHHHHHHHHHHHHHH-C------TTTEEEEETT-SCHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHhcc-----CcccHHHHHHHHHHHHHHHHHh-C------CCCEEEEeCC-CCHHHHHHHHHHH
Confidence 468899999999999995433 223333555544332 111111 1 1235789976 5999999999887
Q ss_pred hhhhhh
Q psy14505 1070 FATLFK 1075 (1619)
Q Consensus 1070 i~~ll~ 1075 (1619)
+..++.
T Consensus 189 l~~~l~ 194 (197)
T 2z0h_A 189 VKRRWK 194 (197)
T ss_dssp TTCC--
T ss_pred HHHHhc
Confidence 766544
No 171
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=96.98 E-value=0.00048 Score=91.75 Aligned_cols=71 Identities=21% Similarity=0.244 Sum_probs=59.8
Q ss_pred ceEEEEEEEEEecceEEEeeCC-CeEEEEeCCCCC--CCCC--------c--cc----cccCCCCCCEEEEEEEEeecC-
Q psy14505 1429 GEKIKGIIKSITDFGIFIGLDG-NIDGLIHLSDLS--WTDP--------G--EE----IIRNFKKGDEIEAIILSIDVE- 1490 (1619)
Q Consensus 1429 G~~v~G~V~~i~~~GvfV~~~~-~v~Glv~~sels--~~~~--------~--~~----~~~~f~vGq~V~~~Vl~vd~e- 1490 (1619)
|+.+.|+|++++++|+||.+.+ |+.|+||.++++ ++.+ . .+ ....|++||.|+|+|..+|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 9999999999999999999988 899999999997 2210 0 11 346799999999999999974
Q ss_pred --CCeEEEeee
Q psy14505 1491 --KERISLGIK 1499 (1619)
Q Consensus 1491 --~~ri~LSlK 1499 (1619)
++||.||+|
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 489999987
No 172
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=96.95 E-value=0.0014 Score=72.73 Aligned_cols=67 Identities=16% Similarity=0.300 Sum_probs=59.4
Q ss_pred CCCcEEEEEEEE----EecCeEEEEeCC----EEEEeeccccCccccCCCccccccCCEEEEEEEEeecCC--CeEEEee
Q psy14505 1255 KEGCTVKGVVKN----ITDYGAFIDLGG----IDGLLHITDIAWRRVKHPSEILTIGQDISTKILKYDQEK--NRVSLGM 1324 (1619)
Q Consensus 1255 ~~G~iv~g~V~~----v~~~G~~V~l~g----i~g~l~~sels~~~~~~~~~~~~vG~~v~vrVl~vd~~~--~~i~LSl 1324 (1619)
+.|++|+|+|.+ +.+..++|++|. .+|+||.+++. |.+.|++|+.++|.|+.++... .++.||.
T Consensus 6 r~GeIVtG~V~r~~~~v~~~~ViVdlG~~~~k~EgiLP~~Eqi------p~E~~~~GDrIkayV~~V~~~~~gpqIiLSR 79 (251)
T 2asb_A 6 REGEIVAGVIQRDSRANARGLVVVRIGTETKASEGVIPAAEQV------PGESYEHGNRLRCYVVGVTRGAREPLITLSR 79 (251)
T ss_dssp CTTCEEEEEEECCHHHHHTTCEEEEECSSSSCEEEEECGGGSC------TTCCCCTTCEEEEEEEEEECCSSSCEEEEES
T ss_pred cCCCEEEEEEEEccccccCCeEEEEeCCCCcceEEEEcHHHcC------CCccCCCCCEEEEEEEEEEcCCCCCEEEEEe
Confidence 589999999999 888999999985 99999999986 5678999999999999999765 5799998
Q ss_pred ecc
Q psy14505 1325 KQL 1327 (1619)
Q Consensus 1325 K~~ 1327 (1619)
...
T Consensus 80 t~p 82 (251)
T 2asb_A 80 THP 82 (251)
T ss_dssp SCH
T ss_pred ccH
Confidence 643
No 173
>2nn6_H Exosome complex exonuclease RRP4; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=96.94 E-value=0.00076 Score=78.05 Aligned_cols=73 Identities=16% Similarity=0.248 Sum_probs=60.9
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCC---c------cccccCCCCCCEEEEEEEEeecCCCeEEEe
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDP---G------EEIIRNFKKGDEIEAIILSIDVEKERISLG 1497 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~---~------~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LS 1497 (1619)
++|++|.|.|+++.++|+||.+.....|++|.+++++... . .+..+.|++||.|.|+|++++ +...+.||
T Consensus 94 ~vGDvViG~Vt~V~~~~a~VdI~s~~~~~l~iS~v~f~gg~iR~~~~~D~~~m~~~l~vGDlV~ArVisv~-~~~~i~LS 172 (308)
T 2nn6_H 94 EVGDIVVGRITEVQQKRWKVETNSRLDSVLLLSSMNLPGGELRRRSAEDELAMRGFLQEGDLISAEVQAVF-SDGAVSLH 172 (308)
T ss_dssp CSSBCCCEEEEEEETTEEEEECSSSSCEEEESSCCC-------------CHHHHHHSCSSCEECCEEEEEE-TTTEEEEE
T ss_pred CCCCEEEEEEEEEeCceEEEEECCCcCCceechhhccccceeecccchhhhhhhccCCCCCEEEEEEEEcC-CCCCEEEE
Confidence 6899999999999999999999878899999999864211 1 244578999999999999999 46789999
Q ss_pred eec
Q psy14505 1498 IKQ 1500 (1619)
Q Consensus 1498 lK~ 1500 (1619)
+|.
T Consensus 173 tr~ 175 (308)
T 2nn6_H 173 TRS 175 (308)
T ss_dssp CCS
T ss_pred ecC
Confidence 985
No 174
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.89 E-value=0.003 Score=69.49 Aligned_cols=77 Identities=10% Similarity=0.126 Sum_probs=57.5
Q ss_pred CCeEEeccccCe------eeecCCCeEEEEEcCHHHHHHhchHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCC
Q psy14505 974 PGLVADGRDMGT------TVFPDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPE 1047 (1619)
Q Consensus 974 ~~~V~~GRd~~~------~v~p~a~~kifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~ 1047 (1619)
..+|++|..... .+.+.++++|||+++.+.|.+|+.++...+|. +.+++.+.+..+|..+. |.+.|+....
T Consensus 125 ~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~~~~g~--t~~~~~~~~~~~~~~~~-~~i~~~~~~a 201 (208)
T 3c8u_A 125 RVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRWLDHGL--NHDAAVARAQGNDLANA-RAIEAARLPA 201 (208)
T ss_dssp CEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHHHHTTC--CHHHHHHHHHTHHHHHH-HHHHTTBCCC
T ss_pred cEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHHHhcCC--CHHHHHHHHHhccHHHH-HHHHhCCCCC
Confidence 457999975421 23566789999999999999998888655555 89999999998888866 5667777665
Q ss_pred CceEEcc
Q psy14505 1048 QAHLLNT 1054 (1619)
Q Consensus 1048 dal~Idt 1054 (1619)
|.+ |++
T Consensus 202 D~v-i~~ 207 (208)
T 3c8u_A 202 DLT-WPQ 207 (208)
T ss_dssp SEE-EC-
T ss_pred CEE-eeC
Confidence 544 554
No 175
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=96.86 E-value=0.0019 Score=68.81 Aligned_cols=71 Identities=10% Similarity=0.036 Sum_probs=61.0
Q ss_pred cccceeEEEEEEEEcCCeEEEEEcC-CEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeee
Q psy14505 1339 YPRGTRLLGKVTNLTDYGAFVEIEK-GIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMK 1412 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~~G~fV~l~~-gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK 1412 (1619)
.++||+|.|.|+.+...+++|+++. ...|++|.+++. .........|++||.|.|||.+++.. ..+.||+.
T Consensus 5 P~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~--g~~k~~r~~l~~GDlV~ArV~~~~~~-~~~~Ltc~ 76 (175)
T 2ja9_A 5 PSVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP--NASKKNRPTLQVGDLVYARVCTAEKE-LEAEIECF 76 (175)
T ss_dssp CCTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST--TCCSSSCCCCCTTCEEEEEEEECCTT-SCCEEESS
T ss_pred CCCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC--chhhhhhccCCCCCEEEEEEEEecCC-CceEEEec
Confidence 5789999999999999999999998 799999999885 23456678899999999999999854 56788853
No 176
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.83 E-value=0.0063 Score=66.55 Aligned_cols=30 Identities=23% Similarity=0.329 Sum_probs=25.8
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCE--Eec
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFH--YLD 889 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~--~~d 889 (1619)
++|.+.|.+|+||+|.++.|+++++.. +++
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~ 36 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELKRDVYL 36 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEE
Confidence 468888999999999999999999873 554
No 177
>2vnu_D Exosome complex exonuclease RRP44; hydrolase-RNA complex, RNA degradation, RNA-binding, RNA Pro; HET: 1PE; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.5 b.40.4.5 b.40.4.5 b.40.4.16
Probab=96.79 E-value=0.0011 Score=86.80 Aligned_cols=70 Identities=24% Similarity=0.396 Sum_probs=52.2
Q ss_pred eeEEEEEEEEcCCeEEEEEcC-CEEEEEeccccC----ccccC--------CC----ccccccCCCEEEEEEEEeecc--
Q psy14505 1343 TRLLGKVTNLTDYGAFVEIEK-GIEGLVHISEMD----WINKN--------VT----PSKIVQLNDTVEIMILEINEE-- 1403 (1619)
Q Consensus 1343 ~iv~g~V~~v~~~G~fV~l~~-gv~GlV~~sels----~~~~~--------~~----~~~~~~vG~~V~vrVl~id~e-- 1403 (1619)
+.+.|+|+++.++|+||.+.+ +++|+||+++|+ |.... .+ +...|++||.|+|+|..+|.+
T Consensus 671 ~~~~g~V~~V~~~G~fV~l~~~giEGlVhis~L~~~~d~~~fd~~~~~l~g~~~~~~~~~~~~lGD~V~VkV~~vd~~~~ 750 (760)
T 2vnu_D 671 STETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPIT 750 (760)
T ss_dssp SEEEEEEEEEETTEEEEEETTTTEEEEEEHHHHCSCGGGCEEETTTTEEEECCTTCSSCEEEETTCEEEEEEC-------
T ss_pred eEEEEEEEEEECCeEEEEEeCCCcEEEEEeccccCCCceeEEcccccEEEEecCCCccCcEEecCCEEEEEEEEEECccc
Confidence 789999999999999999987 899999999995 21100 12 357899999999999999988
Q ss_pred -cceEEEeee
Q psy14505 1404 -RRRISLGMK 1412 (1619)
Q Consensus 1404 -~~ri~LSlK 1412 (1619)
+++|.||+|
T Consensus 751 ~~~kI~lslk 760 (760)
T 2vnu_D 751 SKRKAELLLK 760 (760)
T ss_dssp -CCEEEC---
T ss_pred cCCcEEEEeC
Confidence 689999986
No 178
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.78 E-value=0.0017 Score=70.79 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=27.5
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEech
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDS 890 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dt 890 (1619)
.|.+.|..|+||+|.++.|++++|+++++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~e 31 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFKE 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEECC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEcc
Confidence 578889999999999999999999998874
No 179
>2wp8_J Exosome complex exonuclease DIS3; nucleus, hydrolase, RNA-binding, exonucle binding, mitochondrion, rRNA processing; 3.00A {Saccharomyces cerevisiae}
Probab=96.72 E-value=0.0013 Score=87.58 Aligned_cols=71 Identities=24% Similarity=0.375 Sum_probs=59.4
Q ss_pred ceeEEEEEEEEcCCeEEEEEcC-CEEEEEeccccC--ccc--cC--------CC----ccccccCCCEEEEEEEEeecc-
Q psy14505 1342 GTRLLGKVTNLTDYGAFVEIEK-GIEGLVHISEMD--WIN--KN--------VT----PSKIVQLNDTVEIMILEINEE- 1403 (1619)
Q Consensus 1342 G~iv~g~V~~v~~~G~fV~l~~-gv~GlV~~sels--~~~--~~--------~~----~~~~~~vG~~V~vrVl~id~e- 1403 (1619)
|+.+.|+|+++.++|+||.+.+ |++|+||+++|+ +.. .. .+ +...|++||.|+|+|..+|.+
T Consensus 887 ge~~~g~V~~V~~~G~fV~L~~~giEGlVhis~L~~~~d~y~fde~~~~L~g~~~~g~~~~~~~lGD~V~VkV~~vd~~~ 966 (977)
T 2wp8_J 887 ESTETGYVIKVFNNGIVVLVPKFGVEGLIRLDNLTEDPNSAAFDEVEYKLTFVPTNSDKPRDVYVFDKVEVQVRSVMDPI 966 (977)
T ss_dssp TCEEEEEEEEECSSEEEEECTTTCCEEEEEGGGTCSCGGGCEEETTTTEEEECCTTCCSCEEEETTCEEEEEECCCCCSS
T ss_pred ceEEEEEEEEEcCCeEEEEEcCCCeEEEEEeccccCCCceeEEcccccEEEeecCCCccCcEEccCCEEEEEEEEEcCcc
Confidence 8999999999999999999987 899999999996 211 00 12 457899999999999999874
Q ss_pred --cceEEEeee
Q psy14505 1404 --RRRISLGMK 1412 (1619)
Q Consensus 1404 --~~ri~LSlK 1412 (1619)
+++|.||+|
T Consensus 967 ~~~~kI~Lslk 977 (977)
T 2wp8_J 967 TSKRKAELLLK 977 (977)
T ss_dssp SCCCCCCEEEC
T ss_pred cCCCceEEEeC
Confidence 379999986
No 180
>2ja9_A Exosome complex exonuclease RRP40; RNA-binding protein, RNA, S1 domain, KH domain, hydrolase, RNA-binding, nuclear protein; 2.20A {Saccharomyces cerevisiae} SCOP: b.40.4.5 d.51.1.1
Probab=96.67 E-value=0.0039 Score=66.35 Aligned_cols=70 Identities=9% Similarity=0.081 Sum_probs=60.7
Q ss_pred ccceEEEEEEEEEecceEEEeeCC-CeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeee
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDG-NIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIK 1499 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~-~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK 1499 (1619)
++||+|.|.|+.+..++++|.+.+ ...|++|.+.+. ...++....|++||.|.|+|.+++. ...+.||+.
T Consensus 6 ~~gDvViG~V~~v~~~~~~VdI~~~~~~a~L~~s~~~--g~~k~~r~~l~~GDlV~ArV~~~~~-~~~~~Ltc~ 76 (175)
T 2ja9_A 6 SVNDFVIGVIIGTFSDSYKVSLQNFSSSVSLSYMAFP--NASKKNRPTLQVGDLVYARVCTAEK-ELEAEIECF 76 (175)
T ss_dssp CTTCEEEEEEEEECSSEEEEESSTTSCCEEEETTSST--TCCSSSCCCCCTTCEEEEEEEECCT-TSCCEEESS
T ss_pred CCcCEEEEEEEEEECcEEEEEECCCCccEEEEHHHCC--chhhhhhccCCCCCEEEEEEEEecC-CCceEEEec
Confidence 579999999999999999999998 899999999886 2345667789999999999999985 457888853
No 181
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.67 E-value=0.0038 Score=68.56 Aligned_cols=189 Identities=19% Similarity=0.144 Sum_probs=103.4
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhC--CEEechhhHHHHHHH----HHHHcCCCC---CcHHHHHHHHHcccceecCceE
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLG--FHYLDSGALYRLVTL----SAINNNIQL---DNELELVILIKKLNYNFLGKEV 930 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~--~~~~dtg~~yr~~~~----~a~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~ 930 (1619)
.++.+.|+.|+||+|.++.++..++ +.|++.+..|+.... ......+.. .+.+.+.+.+....+. .
T Consensus 7 ~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~--- 81 (211)
T 3asz_A 7 FVIGIAGGTASGKTTLAQALARTLGERVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRG--L--- 81 (211)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTT--C---
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcC--C---
Confidence 4788899999999999999999999 999998876652110 000111110 1122333333221111 0
Q ss_pred EeCCccccccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccC--eeeecCCCeEEEEEcCHHHHHHhc
Q psy14505 931 YLNGVNVTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMG--TTVFPDAFLKIFLTADIKQRTKRR 1008 (1619)
Q Consensus 931 ~~~~~~v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~--~~v~p~a~~kifl~A~~e~Ra~Rr 1008 (1619)
.+.........+... . + .+.++....++++|...- .-.....+++|||+++.+.|..|+
T Consensus 82 -----~~~~~~~~~s~g~~~---~----------~-~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~ 142 (211)
T 3asz_A 82 -----PVEMPVYDFRAYTRS---P----------R-RTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRR 142 (211)
T ss_dssp -----CEEECCEETTTTEEC---S----------S-CEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHH
T ss_pred -----CcCCCcccCcccCCC---C----------C-eEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHH
Confidence 000000000000000 0 0 011233345777775321 111123579999999999999998
Q ss_pred hHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhhhhhhh
Q psy14505 1009 YKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCFATLFK 1075 (1619)
Q Consensus 1009 ~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i~~ll~ 1075 (1619)
..+...+ .+.+...+...+..+...+..+...|+....|.++.|++. ....++.+...+..+++
T Consensus 143 l~r~~~~-~g~t~~~~~~~~~~~~~~~~~~~~~~~~~~aD~ii~~~~~--~~~~~~~~~~~i~~~~~ 206 (211)
T 3asz_A 143 LKRDVLE-RGRSLEGVVAQYLEQVKPMHLHFVEPTKRYADVIVPRGGQ--NPVALEMLAAKALARLA 206 (211)
T ss_dssp HHHHHHH-SCCCHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEESTTS--CHHHHHHHHHHHTHHHH
T ss_pred HHHHHHH-hCCCHHHHHHHHHHhhhhhHHHhcccchhcCeEEEeCCCc--chHHHHHHHHHHHHHHH
Confidence 8875322 1347777777777666655555667777777777666553 33555555555555443
No 182
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.60 E-value=0.0083 Score=66.04 Aligned_cols=32 Identities=34% Similarity=0.321 Sum_probs=28.0
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhC------CEEechh
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLG------FHYLDSG 891 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~------~~~~dtg 891 (1619)
.+|.+.|..|+||+|.++.+++.++ +.++|..
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d 63 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGD 63 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECCh
Confidence 4677889999999999999999887 8899853
No 183
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.58 E-value=0.0016 Score=71.41 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=32.9
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHh-CCEEechhhHHH
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKL-GFHYLDSGALYR 895 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l-~~~~~dtg~~yr 895 (1619)
..+|.+.|++|+||+|.++.++..+ ++.++|.+.+++
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~ 58 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK 58 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence 3578888999999999999999988 999999987765
No 184
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.35 E-value=0.0098 Score=65.23 Aligned_cols=74 Identities=14% Similarity=0.053 Sum_probs=44.2
Q ss_pred CCeEEEEEcCHHHHHHhchHHHHhcC-CCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhh
Q psy14505 991 AFLKIFLTADIKQRTKRRYKQLMQKG-FSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDC 1069 (1619)
Q Consensus 991 a~~kifl~A~~e~Ra~Rr~~~l~~~~-~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~ 1069 (1619)
.++.|||++|++++.+|. .++ ...+.++..+.+.++-..-.. .+ ..+.++||++ .+++++++.|.+.
T Consensus 130 ~d~vi~l~~~~e~~~~Rl-----~r~~~~~~~~~~~~~~~~~~~~~~~----~~--~~~~~~Id~~-~~~e~~~~~i~~~ 197 (215)
T 1nn5_A 130 PDLVLFLQLQLADAAKRG-----AFGHERYENGAFQERALRCFHQLMK----DT--TLNWKMVDAS-KSIEAVHEDIRVL 197 (215)
T ss_dssp CSEEEEEECCHHHHHHC----------CTTCSHHHHHHHHHHHHHHTT----CT--TSCEEEEETT-SCHHHHHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHh-----ccCccccchHHHHHHHHHHHHHHHH----hC--CCCEEEEECC-CCHHHHHHHHHHH
Confidence 468899999999999993 222 222223444443332111110 11 1345889975 6999999999988
Q ss_pred hhhhhhh
Q psy14505 1070 FATLFKE 1076 (1619)
Q Consensus 1070 i~~ll~e 1076 (1619)
+..++..
T Consensus 198 l~~~l~~ 204 (215)
T 1nn5_A 198 SEDAIAT 204 (215)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8776653
No 185
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.34 E-value=0.0054 Score=67.24 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=27.8
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEech
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDS 890 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dt 890 (1619)
++|.+.|..|+||+|.++.|+++++.+++|+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 5788889999999999999999998877776
No 186
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.23 E-value=0.011 Score=65.72 Aligned_cols=38 Identities=26% Similarity=0.490 Sum_probs=34.5
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHHH
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYRL 896 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr~ 896 (1619)
-+.+.+-|++|+||+|.++.|++++|++++++|.+.|.
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~ 45 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRA 45 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHH
Confidence 35677889999999999999999999999999999994
No 187
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.20 E-value=0.0049 Score=67.56 Aligned_cols=92 Identities=8% Similarity=-0.017 Sum_probs=50.7
Q ss_pred hcCCCeEEeccccCee----eecC-CCeEEEEE-cCHHHHHHhchHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCC
Q psy14505 971 RKFPGLVADGRDMGTT----VFPD-AFLKIFLT-ADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLK 1044 (1619)
Q Consensus 971 a~~~~~V~~GRd~~~~----v~p~-a~~kifl~-A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~ 1044 (1619)
+....||+++-.-+.. .+|+ ..+.|||. +|++++.+|. ..++. .+.+++.+.+.. +..+.... +.
T Consensus 101 ~~g~~vi~d~~~~~~~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl----~~R~~-~~~~~i~~rl~~-~~~~~~~~---~~ 171 (204)
T 2qor_A 101 GEGKICLFEMNINGVKQLKESKHIQDGIYIFVKPPSIDILLGRL----KNRNT-EKPEEINKRMQE-LTREMDEA---DK 171 (204)
T ss_dssp HTTCEEEEECCHHHHHHHHHCSSCSCCEEEEEECSCHHHHHHHH----HTCTT-SCHHHHHHHHHH-HHHHHHHH---HH
T ss_pred HcCCeEEEEECHHHHHHHHHhcCCCCeEEEEEcCCCHHHHHHHH----HHcCC-CCHHHHHHHHHH-HHHHHHHh---hh
Confidence 4556788864111100 1232 24789998 9999999992 33332 355666554443 22111100 22
Q ss_pred CCCCceEEccCcccchhhhhhhhhhhhhhh
Q psy14505 1045 CPEQAHLLNTSKMNINQVVNQILDCFATLF 1074 (1619)
Q Consensus 1045 ~~~dal~Idts~l~ieevv~~I~~~i~~ll 1074 (1619)
...|.+ |+++ +++++++.|.+.+...+
T Consensus 172 ~~~d~v-i~n~--~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 172 VGFNYF-IVND--DLARTYAELREYLLGSY 198 (204)
T ss_dssp HTCSEE-EECS--SHHHHHHHHHHHHHHHC
T ss_pred ccCcEE-EECc--CHHHHHHHHHHHHHHHh
Confidence 223445 4544 89999999988776543
No 188
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=95.99 E-value=0.029 Score=59.79 Aligned_cols=31 Identities=23% Similarity=0.303 Sum_probs=26.7
Q ss_pred cEEEecCCcCCCCchhHHHHHHHh---CCEEech
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKL---GFHYLDS 890 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l---~~~~~dt 890 (1619)
.+|.+.|..|+||+|.++.|++.+ |+++++.
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 457778999999999999999998 9888743
No 189
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.74 E-value=0.013 Score=74.06 Aligned_cols=35 Identities=26% Similarity=0.392 Sum_probs=29.7
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhC-----CEEechhhH
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLG-----FHYLDSGAL 893 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~-----~~~~dtg~~ 893 (1619)
..+|.+.|..|+||+|+++.|+++++ +.++|...+
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 35688889999999999999999987 489997654
No 190
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.57 E-value=0.054 Score=57.29 Aligned_cols=34 Identities=32% Similarity=0.441 Sum_probs=30.0
Q ss_pred EEEecCCcCCCCchhHHHHHH-HhCCEEechhhHHH
Q psy14505 861 VITIDGPTASGKGTVAQLVAS-KLGFHYLDSGALYR 895 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~-~l~~~~~dtg~~yr 895 (1619)
+|.+.|++|+||+|.++.|++ .+|+.++|++. +|
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~~~~~~~~i~~d~-~r 38 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNINRDD-YR 38 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEECHHH-HH
T ss_pred EEEEecCCCCCHHHHHHHHHhhcCCcEEecHHH-HH
Confidence 578889999999999999999 79999999854 44
No 191
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=95.48 E-value=0.0038 Score=71.01 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=29.1
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhC--CEEechhhH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLG--FHYLDSGAL 893 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~--~~~~dtg~~ 893 (1619)
.+|.+.|++|+||+|.++.|+++++ +.++|...+
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 4678889999999999999999987 678887554
No 192
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=95.37 E-value=0.053 Score=59.11 Aligned_cols=73 Identities=16% Similarity=0.269 Sum_probs=42.0
Q ss_pred CCeEEEEEcCHHHHHHhchHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhh
Q psy14505 991 AFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCF 1070 (1619)
Q Consensus 991 a~~kifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i 1070 (1619)
.|+-|||++|+++..+|+-.+ ..+ ...+..+.+.+. .....+ ..| +..++||++ .++|+|.+.|++.+
T Consensus 122 PDl~i~Ld~~~e~~~~R~~~~---dr~--e~~ef~~rv~~~-y~~la~-~~~----~~~~~IDa~-~~~eeV~~~I~~~i 189 (197)
T 3hjn_A 122 PDLTFYIDVDVETALKRKGEL---NRF--EKREFLERVREG-YLVLAR-EHP----ERIVVLDGK-RSIEEIHRDVVREV 189 (197)
T ss_dssp CSEEEEEECCHHHHHHHC------CTT--CCHHHHHHHHHH-HHHHHH-HCT----TTEEEEETT-SCHHHHHHHHHHHH
T ss_pred CCceeecCcChHHHHHhCcCc---Ccc--ccHHHHHHHHHH-HHHHHH-hCC----CCEEEEcCC-CCHHHHHHHHHHHH
Confidence 469999999999999995422 222 222333333221 111110 011 124789987 59999999998887
Q ss_pred hhhhh
Q psy14505 1071 ATLFK 1075 (1619)
Q Consensus 1071 ~~ll~ 1075 (1619)
++.++
T Consensus 190 ~~rl~ 194 (197)
T 3hjn_A 190 KRRWK 194 (197)
T ss_dssp SCC--
T ss_pred HHHhC
Confidence 76554
No 193
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.35 E-value=0.012 Score=63.93 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=40.1
Q ss_pred cccEEEecCCcCCCCchhHHHHHHHhC---CEEechhhHHHHHHHHHHHcCCCCC
Q psy14505 858 YIPVITIDGPTASGKGTVAQLVASKLG---FHYLDSGALYRLVTLSAINNNIQLD 909 (1619)
Q Consensus 858 ~~~iIti~g~~gsGK~~~~~~la~~l~---~~~~dtg~~yr~~~~~a~~~~~~~~ 909 (1619)
..++|.+.|.+||||.+++..+.+++| ++.+..|...|. .+|.+.|++.+
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~--~~a~~~gl~~~ 62 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKE--QYAQEHGLNFQ 62 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHH--HHHHTTTCCCC
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHH--HHHHHcCCCch
Confidence 346899999999999999999988784 888998888771 23558888755
No 194
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.05 E-value=0.17 Score=56.33 Aligned_cols=32 Identities=34% Similarity=0.495 Sum_probs=27.0
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhC--CEEech
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLG--FHYLDS 890 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~--~~~~dt 890 (1619)
.+.|.+.|+.|+||+|.++.|++.++ +.++.+
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~~ 59 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 59 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCceee
Confidence 35788999999999999999999986 566654
No 195
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=94.66 E-value=0.035 Score=69.99 Aligned_cols=35 Identities=26% Similarity=0.376 Sum_probs=29.0
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhC------CEEechhhHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLG------FHYLDSGALY 894 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~------~~~~dtg~~y 894 (1619)
.++.+-|++|+||+|+++.|+..++ +.++|...+.
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 4677779999999999999999985 7789976553
No 196
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=94.21 E-value=0.1 Score=56.43 Aligned_cols=31 Identities=19% Similarity=0.185 Sum_probs=27.9
Q ss_pred cEEEecCCcCCCCchhHHHHHHHh-CCEEech
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKL-GFHYLDS 890 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l-~~~~~dt 890 (1619)
++|.+.|..|+||+|.++.|++++ |++++|+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 568888999999999999999999 6988875
No 197
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=93.94 E-value=0.26 Score=57.05 Aligned_cols=34 Identities=35% Similarity=0.429 Sum_probs=30.5
Q ss_pred EEEecCCcCCCCchhHHHHHHH-hCCEEechhhHHH
Q psy14505 861 VITIDGPTASGKGTVAQLVASK-LGFHYLDSGALYR 895 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~-l~~~~~dtg~~yr 895 (1619)
+|.+.|.+|+||+|.++.|+++ +|+.++|++ .+|
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~~~~~~i~~D-~~r 38 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKNPGFYNINRD-DYR 38 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSTTEEEECHH-HHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCcEEeccc-HHH
Confidence 5778899999999999999998 499999999 666
No 198
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=93.88 E-value=0.09 Score=60.21 Aligned_cols=70 Identities=13% Similarity=0.133 Sum_probs=60.4
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeee
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIK 1499 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK 1499 (1619)
++||+|-|.|+++....+.|.+.....|++|.+++. ...++....|++||.|.|+|++++. .....||+.
T Consensus 126 ~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~--Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc~ 195 (289)
T 2nn6_G 126 VKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE--GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCI 195 (289)
T ss_dssp CSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS--CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECS
T ss_pred CCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC--cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEec
Confidence 689999999999999999999999889999999876 2345667789999999999999984 456788873
No 199
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=93.84 E-value=0.25 Score=54.12 Aligned_cols=28 Identities=39% Similarity=0.641 Sum_probs=24.4
Q ss_pred EEEecCCcCCCCchhHHHHHHHh--CCEEe
Q psy14505 861 VITIDGPTASGKGTVAQLVASKL--GFHYL 888 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l--~~~~~ 888 (1619)
.|++.|.-|+||+|.++.|+++| |++++
T Consensus 4 FI~~EG~dGsGKsTq~~~L~~~L~~~~~v~ 33 (205)
T 4hlc_A 4 FITFEGPEGSGKTTVINEVYHRLVKDYDVI 33 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHCCCCEE
Confidence 58899999999999999999988 66555
No 200
>2nn6_G Exosome complex exonuclease RRP40; RNA, exosome, PM/SCL, phosphorolytic, hydrolase/transferase complex; 3.35A {Homo sapiens} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=93.74 E-value=0.096 Score=60.02 Aligned_cols=71 Identities=13% Similarity=0.053 Sum_probs=60.7
Q ss_pred cccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeee
Q psy14505 1339 YPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMK 1412 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK 1412 (1619)
.++||+|-|+|+.+....+.|++.....|++|.+++. .........|++||.|.|+|++++. .....||+.
T Consensus 125 P~vGDiVIG~Vt~v~~~~~~VdI~s~~~a~L~~~~f~--Gatk~~r~~f~~GDlV~ArV~s~~~-~~~~eLsc~ 195 (289)
T 2nn6_G 125 PVKGDHVIGIVTAKSGDIFKVDVGGSEPASLSYLSFE--GATKRNRPNVQVGDLIYGQFVVANK-DMEPEMVCI 195 (289)
T ss_dssp CCSSEEEEEEEEEEETTEEEEECSSSSCCCEESCSSS--CCSSCSSSSSCTTCEEEEEEEECCT-TSCCEEECS
T ss_pred CCCCCEEEEEEEEEeCcEEEEEECCCceeEEehhhcC--cchhhhhhhcCCCCEEEEEEEEcCC-CCceEEEec
Confidence 6899999999999999999999998899999999875 2345667889999999999999984 446778873
No 201
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.36 E-value=0.12 Score=57.66 Aligned_cols=29 Identities=28% Similarity=0.281 Sum_probs=21.7
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCCEE
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGFHY 887 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~~~ 887 (1619)
.+.|++.|+.|+||+|.++.++++++-.|
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l~~~~ 53 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRLQERL 53 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhc
Confidence 35799999999999999999999984443
No 202
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=93.04 E-value=0.27 Score=54.12 Aligned_cols=80 Identities=10% Similarity=0.131 Sum_probs=44.4
Q ss_pred cCCCeEEEEEcCHHHHHHhchHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhh
Q psy14505 989 PDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILD 1068 (1619)
Q Consensus 989 p~a~~kifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~ 1068 (1619)
|..++-|||++|+++..+|...+-....+.....+..+.+.+.=..-.... | ...++||++. ++|++.+.|.+
T Consensus 130 ~~PDlvi~Ld~~~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~l~~~~--~----~~~~vIDa~~-s~eeV~~~I~~ 202 (213)
T 4edh_A 130 LRPDLTLVFDLPVEIGLARAAARGRLDRFEQEDRRFFEAVRQTYLQRAAQA--P----ERYQVLDAGL-PLAEVQAGLDR 202 (213)
T ss_dssp CCCSEEEEEECCHHHHHHHHCCCSSCCTTTTSCHHHHHHHHHHHHHHHHHC--T----TTEEEEETTS-CHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHhcCCcCcccccHHHHHHHHHHHHHHHHHHC--C----CcEEEEeCCC-CHHHHHHHHHH
Confidence 445699999999999999933220000111111233333222110000001 1 1258899874 99999999998
Q ss_pred hhhhhhh
Q psy14505 1069 CFATLFK 1075 (1619)
Q Consensus 1069 ~i~~ll~ 1075 (1619)
.+...+.
T Consensus 203 ~l~~~l~ 209 (213)
T 4edh_A 203 LLPNLLE 209 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877664
No 203
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=92.88 E-value=0.26 Score=52.65 Aligned_cols=35 Identities=26% Similarity=0.508 Sum_probs=28.7
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCC-EEechhhHHH
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGF-HYLDSGALYR 895 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~-~~~dtg~~yr 895 (1619)
++.+-|++|+||+|.++.++..++. .++|...+++
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 4667799999999999999988865 7888765543
No 204
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=92.83 E-value=0.086 Score=59.08 Aligned_cols=80 Identities=13% Similarity=0.115 Sum_probs=43.9
Q ss_pred cCCCeEEEEEcCHHHHHHhchHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhh
Q psy14505 989 PDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILD 1068 (1619)
Q Consensus 989 p~a~~kifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~ 1068 (1619)
|.-|+-|||++|+++..+|..++-....+.....+..+.+.+.=..-..+ .| +.++||++. ++|++.+.|.+
T Consensus 153 ~~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~~~~~~~~rv~~~y~~la~~--~~-----~~~vIDa~~-sieeV~~~I~~ 224 (236)
T 3lv8_A 153 FKPDLTLYLDIDPKLGLERARGRGELDRIEKMDISFFERARERYLELANS--DD-----SVVMIDAAQ-SIEQVTADIRR 224 (236)
T ss_dssp CCCSEEEEEECCHHHHHHC-----CCCTTTTSCHHHHHHHHHHHHHHHHH--CT-----TEEEEETTS-CHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHhcCCcchhhhhHHHHHHHHHHHHHHHHHH--CC-----CEEEEeCCC-CHHHHHHHHHH
Confidence 34469999999999999994332100011111123333333211000000 11 258899874 99999999998
Q ss_pred hhhhhhhh
Q psy14505 1069 CFATLFKE 1076 (1619)
Q Consensus 1069 ~i~~ll~e 1076 (1619)
.+...+.+
T Consensus 225 ~l~~~l~~ 232 (236)
T 3lv8_A 225 ALQDWLSQ 232 (236)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHh
Confidence 88776653
No 205
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=91.82 E-value=0.042 Score=64.32 Aligned_cols=35 Identities=26% Similarity=0.462 Sum_probs=29.3
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhC-------CEEechhhHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLG-------FHYLDSGALY 894 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~-------~~~~dtg~~y 894 (1619)
.++.+.|+.|+||+|.++.++..++ +.+++.+..+
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~ 122 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFL 122 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGB
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCcc
Confidence 5788899999999999999999877 7777766554
No 206
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.21 E-value=0.49 Score=57.61 Aligned_cols=34 Identities=24% Similarity=0.290 Sum_probs=31.0
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGAL 893 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~ 893 (1619)
.+|.+.|.+|+||+|.++.+++++|+.++|++.+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~i~~D~~ 292 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVHVNRDTL 292 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEECCGGGS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEEEccchH
Confidence 4677779999999999999999999999999876
No 207
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=91.14 E-value=0.67 Score=52.51 Aligned_cols=32 Identities=25% Similarity=0.409 Sum_probs=28.1
Q ss_pred cccEEEecCCcCCCCchhHHHHHHHh-CCEEec
Q psy14505 858 YIPVITIDGPTASGKGTVAQLVASKL-GFHYLD 889 (1619)
Q Consensus 858 ~~~iIti~g~~gsGK~~~~~~la~~l-~~~~~d 889 (1619)
..+.|.+.|..|+||+|.++.|++.+ ++.++.
T Consensus 23 ~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~i~ 55 (263)
T 1p5z_B 23 RIKKISIEGNIAAGKSTFVNILKQLCEDWEVVP 55 (263)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCTTEEEEC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCEEEe
Confidence 45689999999999999999999998 787774
No 208
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=90.93 E-value=0.71 Score=49.76 Aligned_cols=67 Identities=16% Similarity=0.171 Sum_probs=39.0
Q ss_pred CeEEEEEc-CHHHHHHhchHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhhh
Q psy14505 992 FLKIFLTA-DIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDCF 1070 (1619)
Q Consensus 992 ~~kifl~A-~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~i 1070 (1619)
...||+.+ |++++.+| .+++...+.+++.+.+..- ..+.. .+ ...| .+|+++ +++++++.+.+.+
T Consensus 119 ~~~v~~~~~~~e~l~~R-----l~~R~~~~~~~i~~rl~~~-~~~~~----~~-~~~d-~vi~n~--~~~~~~~~l~~~i 184 (205)
T 3tr0_A 119 ALSIFILPPSIEALRER-----LIKRRQDDTAIIEQRLALA-REEMA----HY-KEFD-YLVVND--NFDQAVQNLIHII 184 (205)
T ss_dssp CEEEEEECSCHHHHHHH-----HHTCTTSCSSTHHHHHHHH-HHHHT----TG-GGCS-EEEECS--SHHHHHHHHHHHH
T ss_pred cEEEEEECcCHHHHHHH-----HHHhCCCCHHHHHHHHHHH-HHHHh----cc-cCCC-EEEECC--CHHHHHHHHHHHH
Confidence 36788877 58888888 3333334556666655442 22211 11 1223 445544 8999999888776
Q ss_pred hh
Q psy14505 1071 AT 1072 (1619)
Q Consensus 1071 ~~ 1072 (1619)
..
T Consensus 185 ~~ 186 (205)
T 3tr0_A 185 SA 186 (205)
T ss_dssp HH
T ss_pred HH
Confidence 53
No 209
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=90.67 E-value=1.3 Score=47.01 Aligned_cols=35 Identities=29% Similarity=0.482 Sum_probs=27.8
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCE--EechhhHHH
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFH--YLDSGALYR 895 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~--~~dtg~~yr 895 (1619)
++.+-|++|+||+|.++.++..++.. ++|...+..
T Consensus 11 ~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~ 47 (191)
T 1zp6_A 11 ILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWG 47 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhh
Confidence 57778999999999999999876544 788765543
No 210
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=90.49 E-value=0.16 Score=59.82 Aligned_cols=36 Identities=36% Similarity=0.503 Sum_probs=33.4
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhH--HH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGAL--YR 895 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~--yr 895 (1619)
.+|.+.|+.|+||++.+..||+.++..+++.+.+ |+
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~qvYr 45 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSMQVYQ 45 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSSTTBT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccccccc
Confidence 3688999999999999999999999999999888 87
No 211
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=89.43 E-value=0.49 Score=58.88 Aligned_cols=33 Identities=6% Similarity=0.018 Sum_probs=28.4
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhCC-------EEechh
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLGF-------HYLDSG 891 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~~-------~~~dtg 891 (1619)
.++|.+.|.+|+||+|+++.||++|+. .|+|.+
T Consensus 395 ~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD 434 (511)
T 1g8f_A 395 GFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHN 434 (511)
T ss_dssp CEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCT
T ss_pred ceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCC
Confidence 467888999999999999999999996 677753
No 212
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=89.23 E-value=0.2 Score=55.30 Aligned_cols=83 Identities=11% Similarity=0.077 Sum_probs=47.0
Q ss_pred cCCCeEEEE-EcCHHHHHHhchHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhh
Q psy14505 989 PDAFLKIFL-TADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQIL 1067 (1619)
Q Consensus 989 p~a~~kifl-~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~ 1067 (1619)
|.-|+-||| ++|+++-.+|+.. ++......+..+.+.+.= .+......++. ....++||+...++|+|.+.|.
T Consensus 124 ~~PDlti~L~dv~pe~~~~R~~~----~~dr~E~~~f~~rvr~~Y-~~la~~~~~~~-~~~~~vID~a~~s~eeV~~~I~ 197 (216)
T 3tmk_A 124 LKPDLTLFLSTQDVDNNAEKSGF----GDERYETVKFQEKVKQTF-MKLLDKEIRKG-DESITIVDVTNKGIQEVEALIW 197 (216)
T ss_dssp BCCSEEEEEECSCCSCGGGCCSS----SCCTTCCHHHHHHHHHHH-HHHHHHHHHTT-CCSEEEEECTTCCHHHHHHHHH
T ss_pred CCCCEEEEEeCCCHHHHHHHhcc----CcccccHHHHHHHHHHHH-HHHHHhccccC-CCCEEEEeCCCCCHHHHHHHHH
Confidence 444699999 9999998777321 111111123333332211 11000000001 1235889976789999999999
Q ss_pred hhhhhhhhhh
Q psy14505 1068 DCFATLFKES 1077 (1619)
Q Consensus 1068 ~~i~~ll~e~ 1077 (1619)
+.+...+...
T Consensus 198 ~~i~~~l~~~ 207 (216)
T 3tmk_A 198 QIVEPVLSTH 207 (216)
T ss_dssp HHHHHHHHSC
T ss_pred HHHHHHHhcc
Confidence 9888877654
No 213
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=88.87 E-value=0.48 Score=55.52 Aligned_cols=37 Identities=22% Similarity=0.351 Sum_probs=29.8
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHhC-------CEEechhhHHH
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKLG-------FHYLDSGALYR 895 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l~-------~~~~dtg~~yr 895 (1619)
.+++.+.|++|+||+|.++.++..++ +.++.....|.
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~ 135 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLY 135 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeeccccc
Confidence 45899999999999999999998875 56666666553
No 214
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=88.69 E-value=0.19 Score=55.34 Aligned_cols=79 Identities=13% Similarity=0.113 Sum_probs=44.2
Q ss_pred cCCCeEEEEEcCHHHHHHhchHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhh
Q psy14505 989 PDAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILD 1068 (1619)
Q Consensus 989 p~a~~kifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~ 1068 (1619)
|.-++-|||++|+++..+|..++-....+.....+..+.+.+. ....... + ...++||++ .++|+|.+.|.+
T Consensus 131 ~~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~~~~~f~~rv~~~-y~~la~~--~----~~~~vIDa~-~s~eeV~~~I~~ 202 (213)
T 4tmk_A 131 FRPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRAR-YLELAAQ--D----KSIHTIDAT-QPLEAVMDAIRT 202 (213)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHSSCCTTTTSCHHHHHHHHHH-HHHHHHT--C----TTEEEEETT-SCHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHhcCCccchhhhHHHHHHHHHHH-HHHHHHH--C----CcEEEECCC-CCHHHHHHHHHH
Confidence 3446999999999998888443300001111112223322221 0000000 0 235889986 499999999988
Q ss_pred hhhhhhh
Q psy14505 1069 CFATLFK 1075 (1619)
Q Consensus 1069 ~i~~ll~ 1075 (1619)
.+...+.
T Consensus 203 ~l~~~l~ 209 (213)
T 4tmk_A 203 TVTHWVK 209 (213)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8877664
No 215
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=88.19 E-value=37 Score=37.99 Aligned_cols=228 Identities=7% Similarity=-0.026 Sum_probs=126.1
Q ss_pred cccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCC-CCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCC
Q psy14505 538 LIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKD-EDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGS 616 (1619)
Q Consensus 538 li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~-~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~ 616 (1619)
.-++...+++.+.+|.++-.+...-+. .....+.. ...+..+....+...++.-+.+|.++... +..
T Consensus 105 ~~~~~~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d---~~~-- 172 (337)
T 1gxr_A 105 LLPDGCTLIVGGEASTLSIWDLAAPTP-------RIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWD---LHN-- 172 (337)
T ss_dssp ECTTSSEEEEEESSSEEEEEECCCC---------EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEE---TTT--
T ss_pred EcCCCCEEEEEcCCCcEEEEECCCCCc-------ceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEe---CCC--
Confidence 445666778888889888766543211 01111212 22333344444556666667778766544 322
Q ss_pred ccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEE
Q psy14505 617 RNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAAL 696 (1619)
Q Consensus 617 ~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~ 696 (1619)
|.++..+- .....+..+... ++...++..+.+|.++..++..-. ....+.....+..+..
T Consensus 173 ----~~~~~~~~--~~~~~i~~~~~~-------~~~~~l~~~~~dg~i~~~d~~~~~-------~~~~~~~~~~v~~~~~ 232 (337)
T 1gxr_A 173 ----QTLVRQFQ--GHTDGASCIDIS-------NDGTKLWTGGLDNTVRSWDLREGR-------QLQQHDFTSQIFSLGY 232 (337)
T ss_dssp ----TEEEEEEC--CCSSCEEEEEEC-------TTSSEEEEEETTSEEEEEETTTTE-------EEEEEECSSCEEEEEE
T ss_pred ----Cceeeeee--cccCceEEEEEC-------CCCCEEEEEecCCcEEEEECCCCc-------eEeeecCCCceEEEEE
Confidence 23333332 123455555433 567789999999999988775422 1222233445555555
Q ss_pred ecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecC-CCCEEEEEEEecCCCCcEEEEEecCceeEEecccccccc
Q psy14505 697 TDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLE-KKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHN 775 (1619)
Q Consensus 697 ~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~-~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~ 775 (1619)
......+++.+.+|.+..+....-. ...+. ....|.++...++ ...++..+.+|.++.-.+..
T Consensus 233 s~~~~~l~~~~~~~~i~~~~~~~~~----------~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~~~~~~~----- 296 (337)
T 1gxr_A 233 CPTGEWLAVGMESSNVEVLHVNKPD----------KYQLHLHESCVLSLKFAYC-GKWFVSTGKDNLLNAWRTPY----- 296 (337)
T ss_dssp CTTSSEEEEEETTSCEEEEETTSSC----------EEEECCCSSCEEEEEECTT-SSEEEEEETTSEEEEEETTT-----
T ss_pred CCCCCEEEEEcCCCcEEEEECCCCC----------eEEEcCCccceeEEEECCC-CCEEEEecCCCcEEEEECCC-----
Confidence 5556677777788988877664311 11222 2334555554443 56677777888877665432
Q ss_pred cccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEe
Q psy14505 776 RGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTR 818 (1619)
Q Consensus 776 R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~ 818 (1619)
|........ ...+.++.....+..++..+.+|.+..+.
T Consensus 297 ----~~~~~~~~~-~~~v~~~~~s~~~~~l~~~~~dg~i~iw~ 334 (337)
T 1gxr_A 297 ----GASIFQSKE-SSSVLSCDISVDDKYIVTGSGDKKATVYE 334 (337)
T ss_dssp ----CCEEEEEEC-SSCEEEEEECTTSCEEEEEETTSCEEEEE
T ss_pred ----CeEEEEecC-CCcEEEEEECCCCCEEEEecCCCeEEEEE
Confidence 122222222 34565555555556677778888776654
No 216
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=87.66 E-value=1 Score=49.83 Aligned_cols=75 Identities=12% Similarity=0.217 Sum_probs=35.3
Q ss_pred CCCeEEEEEcCHHHHHHhchHHHHhcCCCCCHHHHHHHHHhhhhhcccCCCCCCCCCCCceEEccCcccchhhhhhhhhh
Q psy14505 990 DAFLKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIRDKTRNLSPLKCPEQAHLLNTSKMNINQVVNQILDC 1069 (1619)
Q Consensus 990 ~a~~kifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~~l~~~~dal~Idts~l~ieevv~~I~~~ 1069 (1619)
.-|+-|||++|+++..+|. . ..++.....+..+.+.+.=..-..+. | ...++||++ .++|++ +.|.+.
T Consensus 145 ~PDl~I~Ldv~~e~~~~Ri-~---rdr~E~~~~e~~~rv~~~y~~la~~~--~----~~~~vIDa~-~sieeV-~~I~~~ 212 (223)
T 3ld9_A 145 YPDITFIIDVDINESLSRS-C---KNGYEFADMEFYYRVRDGFYDIAKKN--P----HRCHVITDK-SETYDI-DDINFV 212 (223)
T ss_dssp CCSEEEEEECC--------------------CHHHHHHHHHHHHHHHHHC--T----TTEEEEESS-CSSSCC-CHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHh-c---cCccccchHHHHHHHHHHHHHHHHHC--C----CCEEEEcCC-CCHHHH-HHHHHH
Confidence 3469999999999999994 1 11111111223333322111100011 1 135889987 499999 999998
Q ss_pred hhhhhhh
Q psy14505 1070 FATLFKE 1076 (1619)
Q Consensus 1070 i~~ll~e 1076 (1619)
+..++.+
T Consensus 213 l~~~lg~ 219 (223)
T 3ld9_A 213 HLEVIKV 219 (223)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 8887764
No 217
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=87.07 E-value=3 Score=46.32 Aligned_cols=28 Identities=29% Similarity=0.516 Sum_probs=24.7
Q ss_pred cEEEecCCcCCCCchhHHHHHHHh-CCEE
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKL-GFHY 887 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l-~~~~ 887 (1619)
+.|.+.|..|+||+|.++.|++.+ ++.+
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~~~~~ 31 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYPEWHV 31 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCTTSEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcCCCee
Confidence 468889999999999999999999 6655
No 218
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=84.67 E-value=0.9 Score=49.51 Aligned_cols=25 Identities=36% Similarity=0.571 Sum_probs=21.9
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhC
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLG 884 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~ 884 (1619)
.++.+.|++|+||+|..+.|+..+.
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4677889999999999999998874
No 219
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=84.59 E-value=1.1 Score=48.10 Aligned_cols=24 Identities=33% Similarity=0.587 Sum_probs=21.1
Q ss_pred cEEEecCCcCCCCchhHHHHHHHh
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKL 883 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l 883 (1619)
.++.+.|++|+||+|.++.++..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 367788999999999999998876
No 220
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=84.41 E-value=66 Score=37.22 Aligned_cols=244 Identities=10% Similarity=0.025 Sum_probs=122.2
Q ss_pred ccCcceEEEEccCccEEeccCchhhhccc---CCCC---cccccc-CCCCeEEEEEEeeCccEEEEEeeCceEEEEEccc
Q psy14505 539 IASQDMVITLSNLGYIKSQPISEYRAQKR---GGRG---KKAMMT-KDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQ 611 (1619)
Q Consensus 539 i~~e~~~v~ls~~GyiKr~~~~~~~~~~r---~g~g---~~~~~~-k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~e 611 (1619)
-++...+++.+.+|.++-.++...+.... +... ...... .++..+..+. ......++..+..|.++......
T Consensus 158 ~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~i~~~d~~~ 236 (425)
T 1r5m_A 158 NKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVE-WVDDDKFVIPGPKGAIFVYQITE 236 (425)
T ss_dssp CTTSSEEEEEETTCCEEEEETTTTEEEEEECCC---------------CCCBSCCE-EEETTEEEEECGGGCEEEEETTC
T ss_pred CCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEE-EcCCCEEEEEcCCCeEEEEEcCC
Confidence 44566777888888888766543211100 0000 000000 0011122222 23346688888888877655432
Q ss_pred CCCCCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecC-CCCe
Q psy14505 612 IPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLS-NEDF 690 (1619)
Q Consensus 612 lp~~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lk-e~D~ 690 (1619)
+.++..+. .....+..+... ++..+++..+.+|.++...+..-.. ...+. ....
T Consensus 237 ---------~~~~~~~~--~~~~~i~~~~~~-------~~~~~l~~~~~d~~i~i~d~~~~~~-------~~~~~~~~~~ 291 (425)
T 1r5m_A 237 ---------KTPTGKLI--GHHGPISVLEFN-------DTNKLLLSASDDGTLRIWHGGNGNS-------QNCFYGHSQS 291 (425)
T ss_dssp ---------SSCSEEEC--CCSSCEEEEEEE-------TTTTEEEEEETTSCEEEECSSSBSC-------SEEECCCSSC
T ss_pred ---------Cceeeeec--cCCCceEEEEEC-------CCCCEEEEEcCCCEEEEEECCCCcc-------ceEecCCCcc
Confidence 23333332 223445555433 5667899999999999877654221 12222 2344
Q ss_pred EEEEEEecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecCC-CCEEEEEEEecCCCCcEEEEEecCceeEEecc
Q psy14505 691 LIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEK-KQKVIALLVSNNQKQSVLTATENGYGKRTLIK 769 (1619)
Q Consensus 691 l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~-~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~ 769 (1619)
+..+...... .++..+..|.+..+.... |.....+.. ...|..+...++ ...++..+.+|.+..-.+.
T Consensus 292 i~~~~~~~~~-~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~i~i~~~~ 360 (425)
T 1r5m_A 292 IVSASWVGDD-KVISCSMDGSVRLWSLKQ---------NTLLALSIVDGVPIFAGRISQD-GQKYAVAFMDGQVNVYDLK 360 (425)
T ss_dssp EEEEEEETTT-EEEEEETTSEEEEEETTT---------TEEEEEEECTTCCEEEEEECTT-SSEEEEEETTSCEEEEECH
T ss_pred EEEEEECCCC-EEEEEeCCCcEEEEECCC---------CcEeEecccCCccEEEEEEcCC-CCEEEEEECCCeEEEEECC
Confidence 5555444433 777778888887776532 212222222 334555444333 5667778888988877765
Q ss_pred cccccccc----cccc-------eeeeeccCCC--eEEEEEEecCCcEEEEEECCCeEEEEec
Q psy14505 770 EYTKHNRG----TKGI-------ISIKTNKRNG--KVVAATLVNRYHEIMLITTGGILIRTRV 819 (1619)
Q Consensus 770 e~~~~~R~----~kG~-------~~ikl~~~~d--~Lv~~~~~~~~~~i~l~T~~g~~lrf~~ 819 (1619)
......+. ..|. ....+....+ .+..+........++..+.+|.+..+.+
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 423 (425)
T 1r5m_A 361 KLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAI 423 (425)
T ss_dssp HHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEEC
T ss_pred CCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEEecCceEEEEee
Confidence 44311000 0000 1222322112 5555554444556667778887766654
No 221
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=81.87 E-value=1.6 Score=51.15 Aligned_cols=34 Identities=18% Similarity=0.388 Sum_probs=30.7
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGAL 893 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~ 893 (1619)
.+|.+.|+.|+||++++..||++++..++|++.|
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~ 74 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKM 74 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEccccc
Confidence 3677889999999999999999999999998766
No 222
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=81.79 E-value=6.2 Score=45.22 Aligned_cols=34 Identities=15% Similarity=0.311 Sum_probs=29.4
Q ss_pred cEEEecCCcCCCCchhHHHHHHHh--CCEEechhhH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKL--GFHYLDSGAL 893 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l--~~~~~dtg~~ 893 (1619)
.+|.+.|++|+||+|.++.+++++ ++.++|+..+
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 467788999999999999999998 8999996443
No 223
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=79.84 E-value=1.4 Score=47.34 Aligned_cols=169 Identities=14% Similarity=0.162 Sum_probs=82.9
Q ss_pred EEecCCcCCCCchhHHHHHHHh--CCEEechhhHHHHHHHHHHHcCCCC--CcHHHHHHHHHc-ccceecCceEEeCCcc
Q psy14505 862 ITIDGPTASGKGTVAQLVASKL--GFHYLDSGALYRLVTLSAINNNIQL--DNELELVILIKK-LNYNFLGKEVYLNGVN 936 (1619)
Q Consensus 862 Iti~g~~gsGK~~~~~~la~~l--~~~~~dtg~~yr~~~~~a~~~~~~~--~~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 936 (1619)
|.+.||+|+||+|+.+.|.++. .+.+.= -..-|.- ..-...|.+. -..+++.+...+ .++... .++|.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~sv-s~TTR~p-R~gE~~G~dY~Fvs~~eF~~~i~~g~flE~~----~~~g~- 76 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSV-SSTTRTP-RAGEVNGKDYNFVSVDEFKSMIKNNEFIEWA----QFSGN- 76 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECC-CEECSCC-CTTCCBTTTBEECCHHHHHHHHHTTCEEEEE----EETTE-
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEE-EEeccCC-CCCCcCCceeEeecHHHHHHHHHcCCEEEEE----EEcCc-
Confidence 5567999999999999988765 233221 1111200 0001123332 223455544443 222221 11111
Q ss_pred ccccccccccccccccccccHHHHHHHHHHHHhhhcCCCeEEeccccCe----eeecCCCeEEEEEcC-HHHHHHhchHH
Q psy14505 937 VTTLIRNEKVSNNASKIAKFKNIRKELFKIQVKFRKFPGLVADGRDMGT----TVFPDAFLKIFLTAD-IKQRTKRRYKQ 1011 (1619)
Q Consensus 937 v~~~ir~~~~~~~~s~~a~~~~vr~~~~~~~r~~a~~~~~V~~GRd~~~----~v~p~a~~kifl~A~-~e~Ra~Rr~~~ 1011 (1619)
... .....|... +++...||+++---|- -.+|...+-|||..+ .++..+|
T Consensus 77 -------------~YG-t~~~~v~~~-------l~~g~~vil~id~~g~~~~k~~~~~~~~~Ifi~pps~e~L~~R---- 131 (186)
T 1ex7_A 77 -------------YYG-STVASVKQV-------SKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPSVEDLKKR---- 131 (186)
T ss_dssp -------------EEE-EEHHHHHHH-------HHHTSEEEEECCHHHHHHHHTCGGGCCEEEEEECSCHHHHHHH----
T ss_pred -------------eee-eecceeeeh-------hhCCCEEEecCCHHHHHHHHHhcccCceEEEEeCCCHHHHHHH----
Confidence 011 122334433 3456678988732221 023434566888664 6666666
Q ss_pred HHhcCCCCCHHHHHHHHHhhhhhcccCC-CCCCCCCCCceEEccCcccchhhhhhhhhhhh
Q psy14505 1012 LMQKGFSVSMSDLLINLIKRDIRDKTRN-LSPLKCPEQAHLLNTSKMNINQVVNQILDCFA 1071 (1619)
Q Consensus 1012 l~~~~~~~~~~~~~~~i~~rD~~d~~r~-~~~l~~~~dal~Idts~l~ieevv~~I~~~i~ 1071 (1619)
|..+|. -+.+++.+.+.+ ...+..+. ...| |.+++|. ++|++++.+.+++.
T Consensus 132 L~~Rg~-e~~e~i~~Rl~~-a~~e~~~~~~~~f----D~vIvNd---dle~a~~~l~~iI~ 183 (186)
T 1ex7_A 132 LEGRGT-ETEESINKRLSA-AQAELAYAETGAH----DKVIVND---DLDKAYKELKDFIF 183 (186)
T ss_dssp HHHHCC-SCHHHHHHHHHH-HHHHHHHHTTTCS----SEEEECS---SHHHHHHHHHHHHT
T ss_pred HHhcCC-CCHHHHHHHHHH-HHHHHhhccccCC----cEEEECc---CHHHHHHHHHHHHH
Confidence 344554 366777666654 22222221 1122 4566654 58888888876653
No 224
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=79.36 E-value=88 Score=35.26 Aligned_cols=247 Identities=11% Similarity=0.032 Sum_probs=121.6
Q ss_pred ccccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeC-----ceEEEEEccc
Q psy14505 537 DLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNY-----GRLYWLKVWQ 611 (1619)
Q Consensus 537 ~li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~-----Gkv~~i~v~e 611 (1619)
..-++...+++.+.+|.|+--++...+. ...+.....+..+....+...++..+.. |.++......
T Consensus 81 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~ 151 (369)
T 3zwl_B 81 DVDCFTKYCVTGSADYSIKLWDVSNGQC---------VATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIER 151 (369)
T ss_dssp EECTTSSEEEEEETTTEEEEEETTTCCE---------EEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEE
T ss_pred EEcCCCCEEEEEeCCCeEEEEECCCCcE---------EEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecC
Confidence 3445677888888899888766543211 1122233445555555566666666665 7766655443
Q ss_pred CCCCC--ccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecC-CC
Q psy14505 612 IPQGS--RNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLS-NE 688 (1619)
Q Consensus 612 lp~~~--~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lk-e~ 688 (1619)
-.... ....+.++..+........+..+... ++..++++.+.+|.+...++..- +.....+. ..
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~------~~~~~~~~~~~ 218 (369)
T 3zwl_B 152 DSATHELTKVSEEPIHKIITHEGLDAATVAGWS-------TKGKYIIAGHKDGKISKYDVSNN------YEYVDSIDLHE 218 (369)
T ss_dssp CTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC-------GGGCEEEEEETTSEEEEEETTTT------TEEEEEEECCS
T ss_pred CccceeecccccceeeeccCCcCccceeEEEEc-------CCCCEEEEEcCCCEEEEEECCCC------cEeEEEEecCC
Confidence 21110 01112233333322222245554433 56678999999999998877531 11122222 23
Q ss_pred CeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEecCCCCcEEEEEecCceeE---
Q psy14505 689 DFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKR--- 765 (1619)
Q Consensus 689 D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr--- 765 (1619)
..+..+........++..+.+|.+..+....- .....+.....+..+...++ ...+++.+..|....
T Consensus 219 ~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~---------~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~ 288 (369)
T 3zwl_B 219 KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL---------QVLKKYETDCPLNTAVITPL-KEFIILGGGQEAKDVTTT 288 (369)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CEEEEEECSSCEEEEEECSS-SSEEEEEECCC-------
T ss_pred CceeEEEECCCCCEEEEecCCceEEEEECCCC---------ceeeeecCCCCceeEEecCC-CceEEEeecCCCceEEEE
Confidence 45555555555566777778888877765321 12222223333444443333 445555554442111
Q ss_pred --------EecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 766 --------TLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 766 --------~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
+.+-+.. .|.....+....+.+..+........++..+.+|.+..+..+.
T Consensus 289 ~~~~~~~~i~~~d~~------~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~ 346 (369)
T 3zwl_B 289 SANEGKFEARFYHKI------FEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEK 346 (369)
T ss_dssp ------CEEEEEETT------TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEEECH
T ss_pred ecCCCcceeEEEecC------CCcchhheecccCcEEEEEECCCCCEEEEEcCCCeEEEEECcc
Confidence 1111111 1222223332233444444444445566667777777666543
No 225
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=78.39 E-value=2.6 Score=51.86 Aligned_cols=60 Identities=10% Similarity=0.192 Sum_probs=46.8
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeee
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIK 1499 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK 1499 (1619)
.+|+.+.|.|+.+. +..|+||.+++..+ -.....|++||.|+|+|.++|+.++++.+.+-
T Consensus 402 ~~g~~f~g~vv~l~----------~~~glV~v~~l~~d---~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~~ 461 (469)
T 2r7d_A 402 QPERVWDAVVVDRR----------GAQATLLIPDLAFD---VQVNTPAAPGTALQVQFADIDLPQMRVRARSV 461 (469)
T ss_dssp CTTCCEEEEEEEEE----------TTEEEEEEGGGTEE---EEEECCCCTTCEEEEEEEEEETTTTEEEEEEC
T ss_pred CCCCEEEEEEEEEe----------CcEEEEEECCCCeE---EecCCcCCCCCEEEEEEEEEccCCCEEEEEEE
Confidence 57999998875532 34788888888632 23346799999999999999999999988763
No 226
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=78.10 E-value=1.3 Score=47.89 Aligned_cols=37 Identities=30% Similarity=0.350 Sum_probs=28.4
Q ss_pred ccEEEecCCcCCCCchhHHHHHHHh---C--CEEechhhHHH
Q psy14505 859 IPVITIDGPTASGKGTVAQLVASKL---G--FHYLDSGALYR 895 (1619)
Q Consensus 859 ~~iIti~g~~gsGK~~~~~~la~~l---~--~~~~dtg~~yr 895 (1619)
..++.+.|+.|+||+|.++.++..+ | +.+++....++
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 3578899999999999999999865 4 44555566554
No 227
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=78.05 E-value=5.2 Score=50.00 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=28.1
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEe-----chhhHHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYL-----DSGALYR 895 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~-----dtg~~yr 895 (1619)
.+|.+-|.+|+||+|+++.|++.+++.++ +.|.+-+
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~ 76 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRR 76 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHH
Confidence 35667789999999999999999976665 4477433
No 228
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=77.96 E-value=1.7 Score=46.30 Aligned_cols=24 Identities=29% Similarity=0.519 Sum_probs=20.0
Q ss_pred EEEecCCcCCCCchhHHHHHHHhC
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLG 884 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~ 884 (1619)
++.+-|++|+||+|..+.++..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 466779999999999999987653
No 229
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=77.95 E-value=1.1e+02 Score=35.40 Aligned_cols=246 Identities=9% Similarity=-0.002 Sum_probs=127.8
Q ss_pred CCCCccccccCcc-eEEEEccCccEEeccC----chhhh------cc--cCCCCccccccCCCCeEEEEEEeeCccEEEE
Q psy14505 531 INPSTEDLIASQD-MVITLSNLGYIKSQPI----SEYRA------QK--RGGRGKKAMMTKDEDWINQLFIANTHDYILC 597 (1619)
Q Consensus 531 ~~~~~~~li~~e~-~~v~ls~~GyiKr~~~----~~~~~------~~--r~g~g~~~~~~k~~D~~~~~~~~~t~d~lli 597 (1619)
..+..-.+-++.+ .+++.+.+|.++--++ ..-.. .. ..........-...+.+..+....+...|+.
T Consensus 46 ~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 125 (425)
T 1r5m_A 46 DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVT 125 (425)
T ss_dssp SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEE
T ss_pred CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEE
Confidence 3455555667777 8888899999887666 32210 00 0000000000001334555555555666776
Q ss_pred EeeCceEEEEEcccCCCCCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCC
Q psy14505 598 FSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRK 677 (1619)
Q Consensus 598 fT~~Gkv~~i~v~elp~~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r 677 (1619)
-+.+|.++... . .|..+..+- .....+..+.-. ++..+++..+.+|.++..++..-....
T Consensus 126 ~~~dg~i~i~~---~-------~~~~~~~~~--~~~~~v~~~~~~-------~~~~~l~~~~~d~~i~iwd~~~~~~~~- 185 (425)
T 1r5m_A 126 GVENGELRLWN---K-------TGALLNVLN--FHRAPIVSVKWN-------KDGTHIISMDVENVTILWNVISGTVMQ- 185 (425)
T ss_dssp EETTSCEEEEE---T-------TSCEEEEEC--CCCSCEEEEEEC-------TTSSEEEEEETTCCEEEEETTTTEEEE-
T ss_pred EeCCCeEEEEe---C-------CCCeeeecc--CCCccEEEEEEC-------CCCCEEEEEecCCeEEEEECCCCcEEE-
Confidence 67777766543 1 233444332 123456555443 567789999999999987775321111
Q ss_pred CCceeeecCCC--------------CeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecC-CCCEEE
Q psy14505 678 SGIIAVNLSNE--------------DFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLE-KKQKVI 742 (1619)
Q Consensus 678 ~G~~~~~lke~--------------D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~-~~e~Iv 742 (1619)
.+..... ..+..+.. .....+++.+..|.++.+....- .....+. ....|.
T Consensus 186 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~i~~~d~~~~---------~~~~~~~~~~~~i~ 251 (425)
T 1r5m_A 186 ----HFELKETGGSSINAENHSGDGSLGVDVEW-VDDDKFVIPGPKGAIFVYQITEK---------TPTGKLIGHHGPIS 251 (425)
T ss_dssp ----EECCC---------------CCCBSCCEE-EETTEEEEECGGGCEEEEETTCS---------SCSEEECCCSSCEE
T ss_pred ----EeeccccCccceeeccccCCcceeeEEEE-cCCCEEEEEcCCCeEEEEEcCCC---------ceeeeeccCCCceE
Confidence 1111111 00222222 23467888889999888876431 1112222 233455
Q ss_pred EEEEecCCCCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 743 ALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 743 ~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
.+...++ ...++..+.+|.++...+..- .....+......+..+.....+ .++..+.+|.+..++...
T Consensus 252 ~~~~~~~-~~~l~~~~~d~~i~i~d~~~~---------~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~ 319 (425)
T 1r5m_A 252 VLEFNDT-NKLLLSASDDGTLRIWHGGNG---------NSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQ 319 (425)
T ss_dssp EEEEETT-TTEEEEEETTSCEEEECSSSB---------SCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTT
T ss_pred EEEECCC-CCEEEEEcCCCEEEEEECCCC---------ccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCC
Confidence 5544443 456777777888877654322 1122222223445555444333 777788888888887653
No 230
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=76.37 E-value=7.2 Score=42.69 Aligned_cols=67 Identities=10% Similarity=0.129 Sum_probs=47.3
Q ss_pred ccccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccC--ccccCCCc----------cccccCCCEEEEEEEEeecccc
Q psy14505 1338 RYPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMD--WINKNVTP----------SKIVQLNDTVEIMILEINEERR 1405 (1619)
Q Consensus 1338 ~l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels--~~~~~~~~----------~~~~~vG~~V~vrVl~id~e~~ 1405 (1619)
+..+|+++.|+|..+++.|+.+-+.+-.+.+||...|. | ....+. .+.-++|++|+.||.+++..++
T Consensus 126 rPf~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~-~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~ 204 (214)
T 2rf4_A 126 QPQVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDW-TFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGR 204 (214)
T ss_dssp CCCTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSC-BCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSS
T ss_pred ecCCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcc-cccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCC
Confidence 46789999999999999888776667888999998882 2 111100 0111358888888888875444
No 231
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=75.78 E-value=1.7 Score=50.46 Aligned_cols=36 Identities=31% Similarity=0.565 Sum_probs=32.8
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhH--HH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGAL--YR 895 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~--yr 895 (1619)
.+|.+.|+.|+||++.+..+|++++..+++.+.| ||
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~QvYr 41 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSMQVYR 41 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGGGGBT
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCccccee
Confidence 3678889999999999999999999999998887 87
No 232
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=74.71 E-value=1.3 Score=49.54 Aligned_cols=36 Identities=44% Similarity=0.653 Sum_probs=33.7
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhHHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGALYR 895 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~yr 895 (1619)
.++.+-|++|+||+|.++.+++++|+.++|+|.+++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~ 63 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLR 63 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHH
Confidence 478888999999999999999999999999999887
No 233
>2rf4_A DNA-directed RNA polymerase I subunit RPA4; transferase DNA/RNA, DNA-binding, phosphorylation, POL I, POLI, rpoli, nuclear protein; 3.10A {Saccharomyces cerevisiae}
Probab=74.32 E-value=6.4 Score=43.09 Aligned_cols=65 Identities=6% Similarity=-0.039 Sum_probs=46.2
Q ss_pred CCCcEEEEEEEEEecCeEEEE-eCCEEEEeeccccCccccCCCc------------cccccCCEEEEEEEEeecCCCe
Q psy14505 1255 KEGCTVKGVVKNITDYGAFID-LGGIDGLLHITDIAWRRVKHPS------------EILTIGQDISTKILKYDQEKNR 1319 (1619)
Q Consensus 1255 ~~G~iv~g~V~~v~~~G~~V~-l~gi~g~l~~sels~~~~~~~~------------~~~~vG~~v~vrVl~vd~~~~~ 1319 (1619)
.+|+++.|+|..+.+.|+.+- +|-..++||...|.....-++. +.-++|++|++||..++..++.
T Consensus 128 f~GevL~G~V~~~s~~~Ig~~~~G~Fn~~Ip~~~ip~~~~f~~~~~~~~~~~wv~~~~~~ig~~IRFrV~~~~~~~~~ 205 (214)
T 2rf4_A 128 QVGDVLEGYIFIQSASHIGLLIHDAFNASIKKNNIPVDWTFVHNDGNRSLGHWVDSNGEPIDGKLRFTVRNVHTTGRV 205 (214)
T ss_dssp CTTCEEEEEECCCCSSCEEEEETTTEEEEECSTTSCSSCBCCCCSCC-CCCCCBCSSCCBCCSEEEEEEEEEECCSSS
T ss_pred CCCCEEEEEEEEECCCcEEEEEeCCEEEEEcHHHCCCcccccccccccCCCceEcCCCCCCCCEEEEEEEEEEecCCE
Confidence 689999999999999887774 4668899999998543211111 1113688888888888765443
No 234
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=73.73 E-value=6 Score=38.17 Aligned_cols=58 Identities=9% Similarity=-0.082 Sum_probs=48.6
Q ss_pred cccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCcccc-C---CC-ccccccCCCEEEEE
Q psy14505 1339 YPRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINK-N---VT-PSKIVQLNDTVEIM 1396 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~-~---~~-~~~~~~vG~~V~vr 1396 (1619)
...|+.+.|.|+++.+.++-|.+.++-.+.|+...|.|... . .. +.+.+++|+.|.++
T Consensus 31 ~~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 31 GNSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp CTTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred CccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 34588999999999999999999888888999999999543 1 23 56679999999998
No 235
>2r7d_A Ribonuclease II family protein; structural genomics, PSI-2, structure initiative, northeast structural genomics consort NESG; 1.80A {Deinococcus radiodurans R1} SCOP: b.40.4.5 b.40.4.16 PDB: 2r7f_A
Probab=71.47 E-value=4.5 Score=49.74 Aligned_cols=59 Identities=10% Similarity=0.132 Sum_probs=45.8
Q ss_pred ccceeEEEEEEEEcCCeEEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEee
Q psy14505 1340 PRGTRLLGKVTNLTDYGAFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGM 1411 (1619)
Q Consensus 1340 ~~G~iv~g~V~~v~~~G~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSl 1411 (1619)
.+|+.+.|.|+. +. +..|+||++++... ......|++||.|+|+|.++|..++++.+..
T Consensus 402 ~~g~~f~g~vv~---------l~-~~~glV~v~~l~~d---~~~~~~~~lGd~V~V~v~~vd~~~~~i~f~~ 460 (469)
T 2r7d_A 402 QPERVWDAVVVD---------RR-GAQATLLIPDLAFD---VQVNTPAAPGTALQVQFADIDLPQMRVRARS 460 (469)
T ss_dssp CTTCCEEEEEEE---------EE-TTEEEEEEGGGTEE---EEEECCCCTTCEEEEEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEEEE---------Ee-CcEEEEEECCCCeE---EecCCcCCCCCEEEEEEEEEccCCCEEEEEE
Confidence 579999988754 32 34788888888642 2234579999999999999999999987765
No 236
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=71.27 E-value=1.5e+02 Score=33.99 Aligned_cols=195 Identities=13% Similarity=0.032 Sum_probs=99.7
Q ss_pred ceEEEEccCccEEeccCchhhhcccCCCCccccccCC------CCeEEEEEEe----eCccE-EEEEeeCceEEEEEccc
Q psy14505 543 DMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKD------EDWINQLFIA----NTHDY-ILCFSNYGRLYWLKVWQ 611 (1619)
Q Consensus 543 ~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~------~D~~~~~~~~----~t~d~-llifT~~Gkv~~i~v~e 611 (1619)
..+++.+.+|.|+-.++..-.... -.....+.. ...+..+... .+... |+.-+..|.++......
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 157 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETK----KVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 157 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTC----CEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred cEEEEEcCCCCEEEEEccCCcccc----cccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCc
Confidence 677888889988876654322100 000111222 2445555555 45566 66667788877666554
Q ss_pred CCCCCccCCCccce-----eccc-----CCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCce
Q psy14505 612 IPQGSRNSRGKPII-----NMFS-----LKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGII 681 (1619)
Q Consensus 612 lp~~~~~~~G~~i~-----~ll~-----l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~ 681 (1619)
.... ..+..+. .+.. -.....+..+... ++. .++..+.+|.++-.++... ..
T Consensus 158 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~-~l~~~~~dg~i~i~d~~~~-------~~ 219 (397)
T 1sq9_A 158 FADE---SNSLTLNWSPTLELQGTVESPMTPSQFATSVDIS-------ERG-LIATGFNNGTVQISELSTL-------RP 219 (397)
T ss_dssp SSSH---HHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEEC-------TTS-EEEEECTTSEEEEEETTTT-------EE
T ss_pred cccc---cccceeeccCcceeeeeeccccCCCCCceEEEEC-------CCc-eEEEEeCCCcEEEEECCCC-------ce
Confidence 2110 0011111 1110 1123334444332 456 8888999999998887542 22
Q ss_pred eeecCC-------CCeEEEEEEecCCCeEEEEeCC---ceEEEEecccccccCCCCCCccceecC--------------C
Q psy14505 682 AVNLSN-------EDFLIGAALTDGSYDIMLFSDS---GKAVRFNENSVRAMGRSARGVIGMRLE--------------K 737 (1619)
Q Consensus 682 ~~~lke-------~D~l~~~~~~~~~d~lll~T~~---G~~~~~~~~eIp~~~r~a~Gv~~i~L~--------------~ 737 (1619)
...+.. ...+..+........++..+.+ |.+..+....- .....+. .
T Consensus 220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~~---------~~~~~~~~~~~~~~~~~~~~~~ 290 (397)
T 1sq9_A 220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFG---------ERIGSLSVPTHSSQASLGEFAH 290 (397)
T ss_dssp EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTC---------CEEEEECBC--------CCBSB
T ss_pred eEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCCC---------cccceeccCccccccccccccc
Confidence 223333 4555555555455566666666 77776665321 1111222 2
Q ss_pred CCEEEEEEEecCCCCcEEEEEecCceeEEecc
Q psy14505 738 KQKVIALLVSNNQKQSVLTATENGYGKRTLIK 769 (1619)
Q Consensus 738 ~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~ 769 (1619)
...|..+...++ ..+++..+.+|.++.-.+.
T Consensus 291 ~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~ 321 (397)
T 1sq9_A 291 SSWVMSLSFNDS-GETLCSAGWDGKLRFWDVK 321 (397)
T ss_dssp SSCEEEEEECSS-SSEEEEEETTSEEEEEETT
T ss_pred CCcEEEEEECCC-CCEEEEEeCCCeEEEEEcC
Confidence 344555554443 5667777778887776553
No 237
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=70.80 E-value=1.6 Score=49.14 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=30.9
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhHH
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGALY 894 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~y 894 (1619)
++.+.|++|+||+|.++.||++++++++|.+.+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~~~ 36 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDRVQ 36 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCSGG
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccHHh
Confidence 5778899999999999999999999999987753
No 238
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=70.45 E-value=5.6 Score=41.95 Aligned_cols=23 Identities=13% Similarity=0.315 Sum_probs=20.4
Q ss_pred EEEecCCcCCCCchhHHHHHHHh
Q psy14505 861 VITIDGPTASGKGTVAQLVASKL 883 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l 883 (1619)
++.+.|++|+||+|..+.|+..+
T Consensus 7 ~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 7 TLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 57778999999999999998865
No 239
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=68.58 E-value=1.4e+02 Score=32.64 Aligned_cols=231 Identities=9% Similarity=-0.011 Sum_probs=123.5
Q ss_pred ccccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCC
Q psy14505 537 DLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGS 616 (1619)
Q Consensus 537 ~li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~ 616 (1619)
..-++...+++.+.+|.++-..+...... .....+......+..+.. ..+.++.-+.+|.++...
T Consensus 66 ~~~~~~~~l~~~~~dg~i~~~~~~~~~~~------~~~~~~~~~~~~i~~~~~-~~~~l~~~~~d~~i~~~d-------- 130 (313)
T 3odt_A 66 CYDSEKELLLFGGKDTMINGVPLFATSGE------DPLYTLIGHQGNVCSLSF-QDGVVISGSWDKTAKVWK-------- 130 (313)
T ss_dssp EEETTTTEEEEEETTSCEEEEETTCCTTS------CC-CEECCCSSCEEEEEE-ETTEEEEEETTSEEEEEE--------
T ss_pred EECCCCCEEEEecCCCeEEEEEeeecCCC------CcccchhhcccCEEEEEe-cCCEEEEEeCCCCEEEEc--------
Confidence 34566778888888998876554432111 111222222222222223 455677777777766554
Q ss_pred ccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEE
Q psy14505 617 RNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAAL 696 (1619)
Q Consensus 617 ~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~ 696 (1619)
.+.++..+. .....+..+...+ .+...++..+.+|.++-.+... ....+.......+..+..
T Consensus 131 ---~~~~~~~~~--~~~~~v~~~~~~~------~~~~~l~~~~~d~~i~i~d~~~-------~~~~~~~~~~~~i~~~~~ 192 (313)
T 3odt_A 131 ---EGSLVYNLQ--AHNASVWDAKVVS------FSENKFLTASADKTIKLWQNDK-------VIKTFSGIHNDVVRHLAV 192 (313)
T ss_dssp ---TTEEEEEEE--CCSSCEEEEEEEE------TTTTEEEEEETTSCEEEEETTE-------EEEEECSSCSSCEEEEEE
T ss_pred ---CCcEEEecc--cCCCceeEEEEcc------CCCCEEEEEECCCCEEEEecCc-------eEEEEeccCcccEEEEEE
Confidence 223333332 1234454444331 2567899999999998876221 111122223445555444
Q ss_pred ecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecC-CCCEEEEEEEecCCCCcEEEEEecCceeEEecccccccc
Q psy14505 697 TDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLE-KKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHN 775 (1619)
Q Consensus 697 ~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~-~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~ 775 (1619)
... ..++..+.+|.+..+.... |.....+. ....|..+...++ ..++..+.+|.++.-.+...
T Consensus 193 ~~~-~~~~~~~~dg~i~i~d~~~---------~~~~~~~~~~~~~i~~~~~~~~--~~l~~~~~dg~v~iwd~~~~---- 256 (313)
T 3odt_A 193 VDD-GHFISCSNDGLIKLVDMHT---------GDVLRTYEGHESFVYCIKLLPN--GDIVSCGEDRTVRIWSKENG---- 256 (313)
T ss_dssp EET-TEEEEEETTSEEEEEETTT---------CCEEEEEECCSSCEEEEEECTT--SCEEEEETTSEEEEECTTTC----
T ss_pred cCC-CeEEEccCCCeEEEEECCc---------hhhhhhhhcCCceEEEEEEecC--CCEEEEecCCEEEEEECCCC----
Confidence 433 3488888999888877632 22222232 2334555544443 36888888888877654322
Q ss_pred cccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCcc
Q psy14505 776 RGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEI 822 (1619)
Q Consensus 776 R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~eI 822 (1619)
.....+....+.+..+. ..++..++..+.+|.+..+....-
T Consensus 257 -----~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~dg~i~iw~~~~~ 297 (313)
T 3odt_A 257 -----SLKQVITLPAISIWSVD-CMSNGDIIVGSSDNLVRIFSQEKS 297 (313)
T ss_dssp -----CEEEEEECSSSCEEEEE-ECTTSCEEEEETTSCEEEEESCGG
T ss_pred -----ceeEEEeccCceEEEEE-EccCCCEEEEeCCCcEEEEeCCCC
Confidence 22222222233444444 344545778889998888887653
No 240
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=68.13 E-value=1.5e+02 Score=32.78 Aligned_cols=239 Identities=8% Similarity=-0.003 Sum_probs=128.8
Q ss_pred ccccccCcceEEEEccCccEEeccCchhhhcccCCCCcccccc-CCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCC
Q psy14505 535 TEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMT-KDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613 (1619)
Q Consensus 535 ~~~li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~-k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp 613 (1619)
.-..-++...+++.+ +|.++--+...-.... -...... .....+..+....+...|+.-+..|.++... +.
T Consensus 56 ~~~~~~~~~~l~~~~-dg~i~iw~~~~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d---~~ 127 (337)
T 1gxr_A 56 AVTISNPTRHVYTGG-KGCVKVWDISHPGNKS----PVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWD---LA 127 (337)
T ss_dssp EEEECSSSSEEEEEC-BSEEEEEETTSTTCCS----CSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEE---CC
T ss_pred EEEEecCCcEEEEcC-CCeEEEEECCCCCcee----eeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEE---CC
Confidence 334456666777766 8888876554211000 0111111 2334454444445555666666778766554 33
Q ss_pred CCCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCC-CCeEE
Q psy14505 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSN-EDFLI 692 (1619)
Q Consensus 614 ~~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke-~D~l~ 692 (1619)
... ......+. .....+..+... ++..+++..+.+|.++..++... .....++. .+.+.
T Consensus 128 ~~~----~~~~~~~~--~~~~~i~~~~~~-------~~~~~l~~~~~dg~v~~~d~~~~-------~~~~~~~~~~~~i~ 187 (337)
T 1gxr_A 128 APT----PRIKAELT--SSAPACYALAIS-------PDSKVCFSCCSDGNIAVWDLHNQ-------TLVRQFQGHTDGAS 187 (337)
T ss_dssp CC------EEEEEEE--CSSSCEEEEEEC-------TTSSEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEE
T ss_pred CCC----cceeeecc--cCCCceEEEEEC-------CCCCEEEEEeCCCcEEEEeCCCC-------ceeeeeecccCceE
Confidence 221 11222222 223445555433 56778999999999998877532 22223332 34555
Q ss_pred EEEEecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEecCCCCcEEEEEecCceeEEeccccc
Q psy14505 693 GAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYT 772 (1619)
Q Consensus 693 ~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~ 772 (1619)
.+........++..+.+|.+..+....- .....+.....+..+...++ ...+++.+.+|.+....+..-.
T Consensus 188 ~~~~~~~~~~l~~~~~dg~i~~~d~~~~---------~~~~~~~~~~~v~~~~~s~~-~~~l~~~~~~~~i~~~~~~~~~ 257 (337)
T 1gxr_A 188 CIDISNDGTKLWTGGLDNTVRSWDLREG---------RQLQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPD 257 (337)
T ss_dssp EEEECTTSSEEEEEETTSEEEEEETTTT---------EEEEEEECSSCEEEEEECTT-SSEEEEEETTSCEEEEETTSSC
T ss_pred EEEECCCCCEEEEEecCCcEEEEECCCC---------ceEeeecCCCceEEEEECCC-CCEEEEEcCCCcEEEEECCCCC
Confidence 5555555567777788898888776421 12222223344555444333 5667777788887776653221
Q ss_pred ccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 773 KHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 773 ~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
...+......+..+........++..+.+|.+..++...
T Consensus 258 ----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~ 296 (337)
T 1gxr_A 258 ----------KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPY 296 (337)
T ss_dssp ----------EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred ----------eEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEECCC
Confidence 122333234555555554556677778888888887654
No 241
>3d0f_A Penicillin-binding 1 transmembrane protein MRCA; BIG_1156.2, STR genomics, PSI-2, protein structure initiative; 1.64A {Nitrosomonas europaea atcc 19718}
Probab=67.73 E-value=9.2 Score=36.84 Aligned_cols=57 Identities=11% Similarity=-0.020 Sum_probs=48.4
Q ss_pred ccceEEEEEEEEEecceEEEeeCCCeEEEEeCCCCCCCCC----ccc-cccCCCCCCEEEEE
Q psy14505 1427 KKGEKIKGIIKSITDFGIFIGLDGNIDGLIHLSDLSWTDP----GEE-IIRNFKKGDEIEAI 1483 (1619)
Q Consensus 1427 ~vG~~v~G~V~~i~~~GvfV~~~~~v~Glv~~sels~~~~----~~~-~~~~f~vGq~V~~~ 1483 (1619)
..|+.+.+.|.++.+.++-|.+.++-.+.++...+.|... ... +.+.+++|+.|.++
T Consensus 32 ~~~~~~~AvV~~v~~~~~~v~~~~g~~~~l~~~~~~WA~~~~~~~~~~~~~~l~~GdvI~V~ 93 (106)
T 3d0f_A 32 NSDDILAAVVLSATPGAVEAFRKNGETIRITGDGLKAAHRFLSNDPKIGEKRIRPGALIRVK 93 (106)
T ss_dssp TTTTCEEEEEEEEETTEEEEEETTSCEEEECGGGGSTTGGGTTTCTTTGGGSCCTTEEEEEE
T ss_pred ccCCeEEEEEEEeCCCeEEEEEcCCCeEEEcHHHChhhhhcccccccchhccCCCCCEEEEE
Confidence 3488999999999999999999888888899999999642 133 56779999999998
No 242
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=67.65 E-value=1.7 Score=52.17 Aligned_cols=36 Identities=31% Similarity=0.497 Sum_probs=32.3
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhh--HHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGA--LYR 895 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~--~yr 895 (1619)
.+|.+.|+.|+||++.+..||++++..+++.+. +||
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~Ds~QvYr 40 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDSMQVYK 40 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEECCTTTTBS
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeecCccceec
Confidence 367888999999999999999999999998877 677
No 243
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=67.12 E-value=5.3 Score=39.87 Aligned_cols=95 Identities=15% Similarity=0.254 Sum_probs=61.0
Q ss_pred ceEEEEEEEEEecceEEEeeCCCeE--EEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecCcCCCc
Q psy14505 1429 GEKIKGIIKSITDFGIFIGLDGNID--GLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEGDPF 1506 (1619)
Q Consensus 1429 G~~v~G~V~~i~~~GvfV~~~~~v~--Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~~~~p~ 1506 (1619)
|.-+.|+|+.+.+.+++|.+.+.-. -.+|.+++.. .+.......|.+||.|+|.--.=|
T Consensus 15 G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRl-pP~~~~~~~f~~gd~VEV~~~~~d------------------ 75 (128)
T 3h8z_A 15 GAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRL-PPPADYNKEITEGDEVEVYSRANE------------------ 75 (128)
T ss_dssp SCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEEC-CCCC----CCCTTCEEEEEECC--------------------
T ss_pred CCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEc-CCCcccccCCCCCCEEEEEecCCC------------------
Confidence 8999999999999999999987543 4777777763 222334467999999998442111
Q ss_pred ccccccCCCCCeEEEEEEEEecCceEEEEecC---CeEEEEEcccc
Q psy14505 1507 NNYVNINDKGSLVNGIIKSIDTNKGAIIQLSN---EVEGYLRISEE 1549 (1619)
Q Consensus 1507 ~~~~~~~~~G~~v~g~V~~i~~~~G~~V~l~~---gv~G~i~~~~~ 1549 (1619)
..+--...|+|..++.++ .+|+..+ -..-.+....+
T Consensus 76 ------~ep~gWw~a~I~~~kg~f-~~V~y~~~~~~~~EiV~~~rl 114 (128)
T 3h8z_A 76 ------QEPCGWWLARVRMMKGDF-YVIEYAACDATYNEIVTLERL 114 (128)
T ss_dssp -------CCCEEEEEEEEEEETTE-EEEEETTC----CEEECGGGE
T ss_pred ------CCcCccEEEEEEEeeCCE-EEEEEcCCCCCcceEEehhhe
Confidence 122346789999998443 7777654 23444554444
No 244
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=66.93 E-value=1.9e+02 Score=33.56 Aligned_cols=233 Identities=8% Similarity=-0.029 Sum_probs=117.4
Q ss_pred cccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCc
Q psy14505 538 LIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSR 617 (1619)
Q Consensus 538 li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~ 617 (1619)
.-++...+++.+.+|.++--+...-+. ...+......+..+.. +.+.++.-+..|.++.. ++...
T Consensus 142 ~s~~~~~l~~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~v~~~~~-~~~~l~~~~~dg~i~i~---d~~~~-- 206 (401)
T 4aez_A 142 WSHDGSFLSVGLGNGLVDIYDVESQTK---------LRTMAGHQARVGCLSW-NRHVLSSGSRSGAIHHH---DVRIA-- 206 (401)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTCCE---------EEEECCCSSCEEEEEE-ETTEEEEEETTSEEEEE---ETTSS--
T ss_pred ECCCCCEEEEECCCCeEEEEECcCCeE---------EEEecCCCCceEEEEE-CCCEEEEEcCCCCEEEE---ecccC--
Confidence 344556666677777777655432211 1111122222222222 34566666667766544 44321
Q ss_pred cCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCC-CCeEEEEEE
Q psy14505 618 NSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSN-EDFLIGAAL 696 (1619)
Q Consensus 618 ~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke-~D~l~~~~~ 696 (1619)
+..+..+. .....+..+... ++..+++..+.+|.++--++... .....+.. ...+..+..
T Consensus 207 ---~~~~~~~~--~~~~~v~~~~~~-------~~~~~l~s~~~d~~v~iwd~~~~-------~~~~~~~~~~~~v~~~~~ 267 (401)
T 4aez_A 207 ---NHQIGTLQ--GHSSEVCGLAWR-------SDGLQLASGGNDNVVQIWDARSS-------IPKFTKTNHNAAVKAVAW 267 (401)
T ss_dssp ---SCEEEEEE--CCSSCEEEEEEC-------TTSSEEEEEETTSCEEEEETTCS-------SEEEEECCCSSCCCEEEE
T ss_pred ---cceeeEEc--CCCCCeeEEEEc-------CCCCEEEEEeCCCeEEEccCCCC-------CccEEecCCcceEEEEEE
Confidence 12222222 123445555433 56788999999999998887542 12223332 334444444
Q ss_pred ecCCCeEEEEe---CCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEecCCCCcEEEEE--ecCceeEEecccc
Q psy14505 697 TDGSYDIMLFS---DSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTAT--ENGYGKRTLIKEY 771 (1619)
Q Consensus 697 ~~~~d~lll~T---~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~~~~ll~~T--~~G~~Kr~~l~e~ 771 (1619)
......+++.. .+|.+..+.... |.....+..+..|.++...++ ...++.++ .+|.++...+..-
T Consensus 268 ~p~~~~ll~~~~gs~d~~i~i~d~~~---------~~~~~~~~~~~~v~~~~~s~~-~~~l~~~~g~~dg~i~v~~~~~~ 337 (401)
T 4aez_A 268 CPWQSNLLATGGGTMDKQIHFWNAAT---------GARVNTVDAGSQVTSLIWSPH-SKEIMSTHGFPDNNLSIWSYSSS 337 (401)
T ss_dssp CTTSTTEEEEECCTTTCEEEEEETTT---------CCEEEEEECSSCEEEEEECSS-SSEEEEEECTTTCEEEEEEEETT
T ss_pred CCCCCCEEEEecCCCCCEEEEEECCC---------CCEEEEEeCCCcEEEEEECCC-CCeEEEEeecCCCcEEEEecCCc
Confidence 44455566554 478877776532 222223334455666554443 44454444 5777766554321
Q ss_pred cccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 772 TKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 772 ~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
.......+....+.+..+....++..++..+.+|.+..+.+..
T Consensus 338 -------~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~i~iw~~~~ 380 (401)
T 4aez_A 338 -------GLTKQVDIPAHDTRVLYSALSPDGRILSTAASDENLKFWRVYD 380 (401)
T ss_dssp -------EEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSEEEEEECCC
T ss_pred -------cceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCC
Confidence 1122223333233454444444445666677777777776654
No 245
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=66.31 E-value=9.8 Score=35.80 Aligned_cols=52 Identities=21% Similarity=0.321 Sum_probs=44.9
Q ss_pred chhhcchHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH---HHHHHHHHHHHHh
Q psy14505 463 PLQRLTNMEQKKIINKYENVIKKVIDLTDILSNSKRIIE---IITDELNIIKNKY 514 (1619)
Q Consensus 463 ~L~~Lt~~e~~~l~~e~~~l~~~i~~l~~iL~~~~~~~~---~i~~el~~ik~~f 514 (1619)
+|.+....-..+|..|+++|.++|..|+.+.+.-+.+++ .+..||+.+.+.|
T Consensus 40 rLc~~Vd~t~~eL~~EI~~L~~eI~~LE~iqs~aK~LRnKA~~L~~eLe~F~~~y 94 (96)
T 1t3j_A 40 RLCQQVDMTQKHLEEEIARLSKEIDQLEKMQNNSKLLRNKAVQLESELENFSKQF 94 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHh
Confidence 566666777889999999999999999999988888874 6788999999888
No 246
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=62.35 E-value=7.3 Score=42.77 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=14.8
Q ss_pred cEEEecCCcCCCCchhHHHHH-HHh
Q psy14505 860 PVITIDGPTASGKGTVAQLVA-SKL 883 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la-~~l 883 (1619)
.++.+-|+.|+||+|..+.++ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 367788999999999999998 654
No 247
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=60.99 E-value=2.2e+02 Score=32.11 Aligned_cols=251 Identities=8% Similarity=-0.031 Sum_probs=128.3
Q ss_pred ccccccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCC-CCeEEEEEEeeCccEEEEEeeCceEEEEEcccCC
Q psy14505 535 TEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKD-EDWINQLFIANTHDYILCFSNYGRLYWLKVWQIP 613 (1619)
Q Consensus 535 ~~~li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~-~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp 613 (1619)
.-.+-++.+.+++.+.+|.|+--+...-+.. ....+.. .+.+..+....+...|+.-+.+|.++... +.
T Consensus 13 ~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~-------~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd---~~ 82 (372)
T 1k8k_C 13 CHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-------QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT---LK 82 (372)
T ss_dssp EEEECTTSSEEEEECSSSEEEEEEEETTEEE-------EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE---EE
T ss_pred EEEECCCCCEEEEEeCCCEEEEEeCCCCcEE-------eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEE---CC
Confidence 3344566777888888998887654432100 0111211 23344444445556666667777665543 32
Q ss_pred CCCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEE
Q psy14505 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIG 693 (1619)
Q Consensus 614 ~~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~ 693 (1619)
... -.+...+. .....+..+... ++..+++..+.+|.++-.....-.... -...+...-.+.+..
T Consensus 83 ~~~----~~~~~~~~--~~~~~v~~~~~~-------~~~~~l~~~~~d~~v~i~d~~~~~~~~--~~~~~~~~~~~~i~~ 147 (372)
T 1k8k_C 83 GRT----WKPTLVIL--RINRAARCVRWA-------PNEKKFAVGSGSRVISICYFEQENDWW--VCKHIKKPIRSTVLS 147 (372)
T ss_dssp TTE----EEEEEECC--CCSSCEEEEEEC-------TTSSEEEEEETTSSEEEEEEETTTTEE--EEEEECTTCCSCEEE
T ss_pred CCe----eeeeEEee--cCCCceeEEEEC-------CCCCEEEEEeCCCEEEEEEecCCCcce--eeeeeecccCCCeeE
Confidence 211 01111111 223445555433 567789999999998876553211000 001111112455666
Q ss_pred EEEecCCCeEEEEeCCceEEEEecccccccC---------CCCCCccceecCC-CCEEEEEEEecCCCCcEEEEEecCce
Q psy14505 694 AALTDGSYDIMLFSDSGKAVRFNENSVRAMG---------RSARGVIGMRLEK-KQKVIALLVSNNQKQSVLTATENGYG 763 (1619)
Q Consensus 694 ~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~---------r~a~Gv~~i~L~~-~e~Iv~~~~~~~~~~~ll~~T~~G~~ 763 (1619)
+........++..+.+|.+..+....-.... +...|.....+.. ...|.++...++ ...++..+.+|.+
T Consensus 148 ~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~d~~i 226 (372)
T 1k8k_C 148 LDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSAN-GSRVAWVSHDSTV 226 (372)
T ss_dssp EEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSS-SSEEEEEETTTEE
T ss_pred EEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCC-CCEEEEEeCCCEE
Confidence 5555555667777788988888753211110 0123333334432 334555544443 5677788888888
Q ss_pred eEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 764 KRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 764 Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
+...+... .....+......+..+.. .++..+++...+|.+..+....
T Consensus 227 ~i~d~~~~---------~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~d~~i~i~~~~~ 274 (372)
T 1k8k_C 227 CLADADKK---------MAVATLASETLPLLAVTF-ITESSLVAAGHDCFPVLFTYDS 274 (372)
T ss_dssp EEEEGGGT---------TEEEEEECSSCCEEEEEE-EETTEEEEEETTSSCEEEEEET
T ss_pred EEEECCCC---------ceeEEEccCCCCeEEEEE-ecCCCEEEEEeCCeEEEEEccC
Confidence 77665422 222233322234444433 3455566666888777777654
No 248
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=60.53 E-value=17 Score=41.56 Aligned_cols=27 Identities=26% Similarity=0.290 Sum_probs=23.4
Q ss_pred cccEEEecCCcCCCCchhHHHHHHHhC
Q psy14505 858 YIPVITIDGPTASGKGTVAQLVASKLG 884 (1619)
Q Consensus 858 ~~~iIti~g~~gsGK~~~~~~la~~l~ 884 (1619)
...+|.+.|++|+||+|.++.++..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346899999999999999999998775
No 249
>4b9x_A TDRD1, tudor domain-containing protein 1; replication; 2.80A {Mus musculus}
Probab=58.83 E-value=59 Score=35.62 Aligned_cols=137 Identities=15% Similarity=0.139 Sum_probs=81.7
Q ss_pred cccCCCEEEEEEEEEeCCCCeEEEehH--H-HHHHHh-HHHHHHH----------cc-----------CCCEEEEEEEEE
Q psy14505 1126 EVKIGDFVSVAIESLENGFGDTILSRD--K-AKRLAS-WLSLEKA----------ME-----------SGEIITGTINGK 1180 (1619)
Q Consensus 1126 ~~kvG~~v~~~V~~v~~~~~~v~LS~~--~-~~~~~~-~~~~~~~----------l~-----------~G~~v~g~V~~v 1180 (1619)
.|.+|+.+.+.|..+.+- +.+.+... . ...... ...+.+. .+ .|....|.|.++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP-~~Fyvq~~~~~~~~~L~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~WyRa~V~~~ 90 (226)
T 4b9x_A 12 EFTVDETVDVVVCMMYSP-GEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEI 90 (226)
T ss_dssp CCCTTCEEEEEEEEEEET-TEEEEEECCTTHHHHHHHHHHHHHHHTSSSCC--CCCCTTCEEEEEETTTTEEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEeCC-CEEEEEEcCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEE
Confidence 488999999999998654 34555431 1 111111 1111110 11 245678888888
Q ss_pred EeCe-EEEEe-C-CEEEEEcCcccccCCCCCCCCCCCCeEEEEEEEEecCCCeEEeecchhhhhhhhHHHHHHHhccCCC
Q psy14505 1181 VKGG-LTVLT-N-GLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEG 1257 (1619)
Q Consensus 1181 ~~~G-l~V~~-g-g~~gflp~s~~~~~~~~~~~~~vG~~v~~~Vl~vd~~~~~i~LS~k~~~~~~~~~~~~~~~~~l~~G 1257 (1619)
.+.+ +.|.+ + |-...+|.+.+-.-+ ........+.++|+.-.+.|..+ .|.......+..+-.|
T Consensus 91 ~~~~~~~V~~vDyGn~~~v~~~~l~~l~-~~f~~lP~qA~~c~L~~v~p~~~------------~w~~ea~~~f~~l~~~ 157 (226)
T 4b9x_A 91 LPSGNVKVHFVDYGNVEEVTTDQLQAIL-PQFLLLPFQGMQCWLVDIQPPNK------------HWTKEATARFQACVVG 157 (226)
T ss_dssp CSSSEEEEECTTTCCEEEEEGGGEECCC-GGGSSSCBCCEEEEESSEECSSS------------SCCHHHHHHHHHHHTT
T ss_pred CCCCeEEEEEEecCCEEEEEHHHhccCh-HHHcccccceEEEEEecEECCCC------------CCCHHHHHHHHHHHCC
Confidence 6554 45522 1 556677766542111 12223478999999987776432 1222334455666779
Q ss_pred cEEEEEEEEEecCeEEEEe
Q psy14505 1258 CTVKGVVKNITDYGAFIDL 1276 (1619)
Q Consensus 1258 ~iv~g~V~~v~~~G~~V~l 1276 (1619)
..+.++|..+...++.|.|
T Consensus 158 k~l~~~V~~~~~~~~~V~L 176 (226)
T 4b9x_A 158 LKLQARVVEITANGVGVEL 176 (226)
T ss_dssp CCEEEEEEEECSSCEEEEE
T ss_pred CeEEEEEEEEeCCeEEEEE
Confidence 9999999999999888876
No 250
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=57.59 E-value=2.2e+02 Score=31.06 Aligned_cols=226 Identities=9% Similarity=0.072 Sum_probs=127.4
Q ss_pred cCcceEEEEccCccEEeccCchhhhcccCCCCccccccC-CCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCcc
Q psy14505 540 ASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTK-DEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRN 618 (1619)
Q Consensus 540 ~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k-~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~ 618 (1619)
++...+++.+.+|.|+--+....... ..+. ....+..+....+...|+.-+.+|.+....+.+...
T Consensus 27 ~~~~~l~s~~~dg~v~vw~~~~~~~~---------~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~---- 93 (313)
T 3odt_A 27 VDDSKVASVSRDGTVRLWSKDDQWLG---------TVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG---- 93 (313)
T ss_dssp EETTEEEEEETTSEEEEEEESSSEEE---------EEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT----
T ss_pred cCCCEEEEEEcCCcEEEEECCCCEEE---------EEeecCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC----
Confidence 67778889999999887655332111 1111 133444444555667777778888877766655432
Q ss_pred CCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecC-CCCeEEEEEEe
Q psy14505 619 SRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLS-NEDFLIGAALT 697 (1619)
Q Consensus 619 ~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lk-e~D~l~~~~~~ 697 (1619)
+.++..+- .....+..+.. +...++..+.+|.++--... .....+. ....+..+...
T Consensus 94 --~~~~~~~~--~~~~~i~~~~~---------~~~~l~~~~~d~~i~~~d~~---------~~~~~~~~~~~~v~~~~~~ 151 (313)
T 3odt_A 94 --EDPLYTLI--GHQGNVCSLSF---------QDGVVISGSWDKTAKVWKEG---------SLVYNLQAHNASVWDAKVV 151 (313)
T ss_dssp --SCC-CEEC--CCSSCEEEEEE---------ETTEEEEEETTSEEEEEETT---------EEEEEEECCSSCEEEEEEE
T ss_pred --CCcccchh--hcccCEEEEEe---------cCCEEEEEeCCCCEEEEcCC---------cEEEecccCCCceeEEEEc
Confidence 23333332 12344544432 34578999999999887611 1112222 23455555544
Q ss_pred c-CCCeEEEEeCCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEecCCCCcEEEEEecCceeEEeccccccccc
Q psy14505 698 D-GSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNR 776 (1619)
Q Consensus 698 ~-~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R 776 (1619)
. ..+.++..+.+|.+..+.... ....+.......|..+...++ ..++..+.+|.++...+..
T Consensus 152 ~~~~~~l~~~~~d~~i~i~d~~~---------~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~dg~i~i~d~~~------ 214 (313)
T 3odt_A 152 SFSENKFLTASADKTIKLWQNDK---------VIKTFSGIHNDVVRHLAVVDD--GHFISCSNDGLIKLVDMHT------ 214 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTE---------EEEEECSSCSSCEEEEEEEET--TEEEEEETTSEEEEEETTT------
T ss_pred cCCCCEEEEEECCCCEEEEecCc---------eEEEEeccCcccEEEEEEcCC--CeEEEccCCCeEEEEECCc------
Confidence 4 566788888889888876211 112222223444555554444 3477888888887766532
Q ss_pred ccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 777 GTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 777 ~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
|.....+....+.+..+.. .++..++..+.+|.+..++...
T Consensus 215 ---~~~~~~~~~~~~~i~~~~~-~~~~~l~~~~~dg~v~iwd~~~ 255 (313)
T 3odt_A 215 ---GDVLRTYEGHESFVYCIKL-LPNGDIVSCGEDRTVRIWSKEN 255 (313)
T ss_dssp ---CCEEEEEECCSSCEEEEEE-CTTSCEEEEETTSEEEEECTTT
T ss_pred ---hhhhhhhhcCCceEEEEEE-ecCCCEEEEecCCEEEEEECCC
Confidence 2233333332344544443 3444688888889888887654
No 251
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=57.53 E-value=20 Score=33.04 Aligned_cols=62 Identities=23% Similarity=0.271 Sum_probs=44.4
Q ss_pred ccCCCcEEEEEEEEEecCeEEEEeC---CEEEEee-ccccCccccCCCccccccCCEEEEEEEEeecC
Q psy14505 1253 TLKEGCTVKGVVKNITDYGAFIDLG---GIDGLLH-ITDIAWRRVKHPSEILTIGQDISTKILKYDQE 1316 (1619)
Q Consensus 1253 ~l~~G~iv~g~V~~v~~~G~~V~l~---gi~g~l~-~sels~~~~~~~~~~~~vG~~v~vrVl~vd~~ 1316 (1619)
++.+|++.+|.|. +.++-++|.|. |.+|++- .-++..++..+.++.+ +|.+++++|+.+|.-
T Consensus 29 ~~~~g~VtkGiVy-~kd~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkL-VGKtIkVqVIRvD~l 94 (102)
T 1jjg_A 29 DLSPGSVHEGIVY-FKDGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERL-VGRVIKTRVVRADGL 94 (102)
T ss_dssp CCCSSCEEEEEEE-EETTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHH-TTCEEEEEEEEECSS
T ss_pred ccCCCceEeeEEE-EeCCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHh-cCceEEEEEEEeccE
Confidence 5789999999987 45566668873 6777753 3333334555555555 999999999999864
No 252
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=55.88 E-value=2.6e+02 Score=31.42 Aligned_cols=172 Identities=7% Similarity=-0.078 Sum_probs=92.2
Q ss_pred CceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeec-CCCCeEEEEEEecCCCeEEEEeCCce
Q psy14505 633 KEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNL-SNEDFLIGAALTDGSYDIMLFSDSGK 711 (1619)
Q Consensus 633 ~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~l-ke~D~l~~~~~~~~~d~lll~T~~G~ 711 (1619)
...+..+.-. ++..+++..+.+|.++.-++..-.. .....+ .-...+..+........++..+.+|.
T Consensus 52 ~~~v~~~~~~-------~~~~~l~~~~~dg~i~vwd~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~ 119 (372)
T 1k8k_C 52 NGQVTGVDWA-------PDSNRIVTCGTDRNAYVWTLKGRTW-----KPTLVILRINRAARCVRWAPNEKKFAVGSGSRV 119 (372)
T ss_dssp SSCEEEEEEE-------TTTTEEEEEETTSCEEEEEEETTEE-----EEEEECCCCSSCEEEEEECTTSSEEEEEETTSS
T ss_pred CCcccEEEEe-------CCCCEEEEEcCCCeEEEEECCCCee-----eeeEEeecCCCceeEEEECCCCCEEEEEeCCCE
Confidence 3445555433 5677899999999998877632210 111222 22345555555555566777778888
Q ss_pred EEEEecccccccCCCCCCccceecCCCCEEEEEEEecCCCCcEEEEEecCceeEEecccccccc---------cccccce
Q psy14505 712 AVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHN---------RGTKGII 782 (1619)
Q Consensus 712 ~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~---------R~~kG~~ 782 (1619)
+..+....-... .-...+...-...|..+...++ ...++..+.+|.++...+....... +...|..
T Consensus 120 v~i~d~~~~~~~----~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 194 (372)
T 1k8k_C 120 ISICYFEQENDW----WVCKHIKKPIRSTVLSLDWHPN-SVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGEL 194 (372)
T ss_dssp EEEEEEETTTTE----EEEEEECTTCCSCEEEEEECTT-SSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCE
T ss_pred EEEEEecCCCcc----eeeeeeecccCCCeeEEEEcCC-CCEEEEEcCCCCEEEEEcccccccccccccccccccchhhh
Confidence 766554321100 0000111112345655554443 5567777888988877653211000 0112444
Q ss_pred eeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 783 SIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 783 ~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
...+....+.+.++........++..+.+|.+..++...
T Consensus 195 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 233 (372)
T 1k8k_C 195 MFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADK 233 (372)
T ss_dssp EEECCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGG
T ss_pred eEecCCCCCeEEEEEECCCCCEEEEEeCCCEEEEEECCC
Confidence 444443234555555544556777888889888888754
No 253
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=55.25 E-value=40 Score=31.40 Aligned_cols=60 Identities=17% Similarity=0.214 Sum_probs=45.5
Q ss_pred ccCCCCCeEEEEEEEEecCceEEEEecCCeEEEEEccccccccccCcCCCCEEEEEEEEEe
Q psy14505 1511 NINDKGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRISEEDNKHEKKLKIGENIDVLTVLID 1571 (1619)
Q Consensus 1511 ~~~~~G~~v~g~V~~i~~~~G~~V~l~~gv~G~i~~~~~~~~~~~~~~~Gq~V~~~Vl~vd 1571 (1619)
+.........|+|+..+..||.+..-.++-.-|+|.+.+... ...+.+||.|.+.+..-+
T Consensus 11 ~~~s~~~~~~G~Vkwf~KGfGFI~~ddgg~DVFvH~s~i~~~-~~~L~~G~~V~F~v~~~~ 70 (89)
T 1wfq_A 11 NGTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGN-LQDLKVGDDVEFEVSSDR 70 (89)
T ss_dssp CSSSCCCEEEEEEEEECSSEEEEEETTTTEEEEEETTTCSSC-TTTCCTTCCEEEEEEECS
T ss_pred CCCCcccccceEEEEEeCCeeEEecCCCCccEEEEhHHhhCc-cCCCCCCCEEEEEEEECC
Confidence 344556788999998875677665444458999999998654 578999999999987543
No 254
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=52.98 E-value=6.8 Score=43.15 Aligned_cols=76 Identities=16% Similarity=0.075 Sum_probs=30.1
Q ss_pred CCCeEEEEEcCHHHHHHhchHHHHhcCCCC-C--HHHHHHHHHhhhhhcccCCCCCC--CCCCCceEEccCcccchhhhh
Q psy14505 990 DAFLKIFLTADIKQRTKRRYKQLMQKGFSV-S--MSDLLINLIKRDIRDKTRNLSPL--KCPEQAHLLNTSKMNINQVVN 1064 (1619)
Q Consensus 990 ~a~~kifl~A~~e~Ra~Rr~~~l~~~~~~~-~--~~~~~~~i~~rD~~d~~r~~~~l--~~~~dal~Idts~l~ieevv~ 1064 (1619)
..|+.|||++|++++.+|..++ +... . ..+..+.+...=..-. ..| ....+.++||++. ++|++.+
T Consensus 146 ~pD~vi~Ld~~~e~~~~Ri~~R----~r~~e~~~~~~~~~rv~~~~~~~~----~~~~~~~~~~~~vId~~~-~~eev~~ 216 (230)
T 2vp4_A 146 QADLIIYLRTSPEVAYERIRQR----ARSEESCVPLKYLQELHELHEDWL----IHQRRPQSCKVLVLDADL-NLENIGT 216 (230)
T ss_dssp CCSEEEEEECCHHHHHHHHHHH----CCGGGTTCCHHHHHHHHHHHHHHH----TSCCSSCCCEEEEEECCC--------
T ss_pred CCCEEEEEeCCHHHHHHHHHHc----CCcccccCcHHHHHHHHHHHHHHH----HHhcccCCCCEEEEECCC-CHHHHHH
Confidence 3568999999999999994322 3210 1 0123333332111111 011 1123358899875 9999999
Q ss_pred hhhhhhhhhh
Q psy14505 1065 QILDCFATLF 1074 (1619)
Q Consensus 1065 ~I~~~i~~ll 1074 (1619)
.|.+.+..++
T Consensus 217 ~I~~~l~~~~ 226 (230)
T 2vp4_A 217 EYQRSESSIF 226 (230)
T ss_dssp ----------
T ss_pred HHHHHHHHHh
Confidence 9987766544
No 255
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=52.80 E-value=3.3e+02 Score=31.76 Aligned_cols=233 Identities=9% Similarity=0.016 Sum_probs=118.9
Q ss_pred cccccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCC-CCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCC
Q psy14505 536 EDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKD-EDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQ 614 (1619)
Q Consensus 536 ~~li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~-~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~ 614 (1619)
-.+-++...+++.+.+|.|+--+..+-+. ...++. .+.+..+....+...|+.-+.+|.+.- +++..
T Consensus 114 ~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~---------~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~i---wd~~~ 181 (410)
T 1vyh_C 114 VIFHPVFSVMVSASEDATIKVWDYETGDF---------ERTLKGHTDSVQDISFDHSGKLLASCSADMTIKL---WDFQG 181 (410)
T ss_dssp EEECSSSSEEEEEESSSCEEEEETTTCCC---------CEEECCCSSCEEEEEECTTSSEEEEEETTSCCCE---EETTS
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCCcE---------EEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEE---EeCCC
Confidence 34556678888999999998766543111 111222 233443433444455555556665443 33322
Q ss_pred CCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCC-CCeEEE
Q psy14505 615 GSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSN-EDFLIG 693 (1619)
Q Consensus 615 ~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke-~D~l~~ 693 (1619)
+..+..+- .-...+..+... ++..+++..+.+|.++--++..- .....+.. .+.+..
T Consensus 182 ------~~~~~~~~--~h~~~V~~v~~~-------p~~~~l~s~s~D~~i~~wd~~~~-------~~~~~~~~h~~~v~~ 239 (410)
T 1vyh_C 182 ------FECIRTMH--GHDHNVSSVSIM-------PNGDHIVSASRDKTIKMWEVQTG-------YCVKTFTGHREWVRM 239 (410)
T ss_dssp ------SCEEECCC--CCSSCEEEEEEC-------SSSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEE
T ss_pred ------CceeEEEc--CCCCCEEEEEEe-------CCCCEEEEEeCCCeEEEEECCCC-------cEEEEEeCCCccEEE
Confidence 23333322 123345555433 56778999999999998876431 11122222 234444
Q ss_pred EEEecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecCCCC-EEEEEEEecC-------------------CCCc
Q psy14505 694 AALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQ-KVIALLVSNN-------------------QKQS 753 (1619)
Q Consensus 694 ~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e-~Iv~~~~~~~-------------------~~~~ 753 (1619)
+........++..+.+|.+..+....- .....+.... .|..+...++ ....
T Consensus 240 ~~~~~~g~~l~s~s~D~~v~vwd~~~~---------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 310 (410)
T 1vyh_C 240 VRPNQDGTLIASCSNDQTVRVWVVATK---------ECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPF 310 (410)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTC---------CEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCE
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC---------ceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCE
Confidence 433333445556667777666654211 1111122111 2222222111 0235
Q ss_pred EEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecC
Q psy14505 754 VLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVS 820 (1619)
Q Consensus 754 ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~ 820 (1619)
++..+.+|.++.-.+. .|.....+....+.+.++.....+..++..+.+|.+..++..
T Consensus 311 l~sgs~D~~i~iwd~~---------~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~ 368 (410)
T 1vyh_C 311 LLSGSRDKTIKMWDVS---------TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYK 368 (410)
T ss_dssp EEEEETTSEEEEEETT---------TTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCT
T ss_pred EEEEeCCCeEEEEECC---------CCceEEEEECCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence 6677788888766542 133444444333455555544445567777788888777764
No 256
>4b9w_A TDRD1, tudor domain-containing protein 1; replication; HET: 2MR; 2.10A {Mus musculus}
Probab=50.13 E-value=87 Score=33.52 Aligned_cols=137 Identities=13% Similarity=0.104 Sum_probs=80.6
Q ss_pred cccCCCEEEEEEEEEeCCCCeEEEehH--H-HH----HHHhHHHHHHH-------cc-----------CCCEEEEEEEEE
Q psy14505 1126 EVKIGDFVSVAIESLENGFGDTILSRD--K-AK----RLASWLSLEKA-------ME-----------SGEIITGTINGK 1180 (1619)
Q Consensus 1126 ~~kvG~~v~~~V~~v~~~~~~v~LS~~--~-~~----~~~~~~~~~~~-------l~-----------~G~~v~g~V~~v 1180 (1619)
.|.+|+.+.+.|..+.+- +.+.+... . .. ........... .+ .|....|.|.++
T Consensus 12 ~l~~~~~~~V~Vt~v~sP-~~Fyvq~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~~~~G~~c~a~~~~d~~wyRa~V~~~ 90 (201)
T 4b9w_A 12 EFTVDETVDVVVCMMYSP-GEFYCHFLKDDALEKLDDLNQSLADYCAQKPPNGFKAEIGRPCCAFFSGDGNWYRALVKEI 90 (201)
T ss_dssp CCCTTCEEEEEEEEEEET-TEEEEEECCTTHHHHHHHHHHHHHHHHHSSSCCCCCCCTTCEEEEEETTTTEEEEEEEEEE
T ss_pred EcCCCCEEEEEEEEEeCC-CEEEEEECCCchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCEEEEEECCCCeEEEEEEEEE
Confidence 488999999999998654 34555421 1 11 11111111111 11 245678888888
Q ss_pred EeCe-EEEEe-C-CEEEEEcCcccccCCCCCCCCCCCCeEEEEEEEEecCCCeEEeecchhhhhhhhHHHHHHHhccCCC
Q psy14505 1181 VKGG-LTVLT-N-GLKAFLPGSLVDIRPVKDTTPFEGKTMDFKVIKLDRKRNNVVLSHRAVIEESMGEERQKLIETLKEG 1257 (1619)
Q Consensus 1181 ~~~G-l~V~~-g-g~~gflp~s~~~~~~~~~~~~~vG~~v~~~Vl~vd~~~~~i~LS~k~~~~~~~~~~~~~~~~~l~~G 1257 (1619)
.+.+ +.|.+ + |....+|.+.+-.-+ ........+.++|+.-.+.|..+ .+.......+..+-.|
T Consensus 91 ~~~~~~~V~~vDyG~~~~v~~~~l~~l~-~~f~~lP~qA~~c~L~~v~p~~~------------~w~~ea~~~f~~l~~~ 157 (201)
T 4b9w_A 91 LPSGNVKVHFVDYGNVEEVTTDQLQAIL-PQFLLLPFQGMQCWLVDIQPPNK------------HWTKEATARFQACVVG 157 (201)
T ss_dssp CTTSCEEEEETTTCCEEEECGGGEEECC-GGGGSSCBCCEEEEESSEECSSS------------SCCHHHHHHHHHHHTT
T ss_pred CCCCeEEEEEEccCCEEEEEHHHhccCh-HhHcccchhhEEEEEcCEEcCCC------------CCCHHHHHHHHHHHCC
Confidence 6554 55522 2 556677766542111 12223478999999977776432 1222233445566678
Q ss_pred cEEEEEEEEEecCeEEEEe
Q psy14505 1258 CTVKGVVKNITDYGAFIDL 1276 (1619)
Q Consensus 1258 ~iv~g~V~~v~~~G~~V~l 1276 (1619)
..+.++|..+...++.|.+
T Consensus 158 k~l~~~V~~~~~~~~~V~L 176 (201)
T 4b9w_A 158 LKLQARVVEITANGVGVEL 176 (201)
T ss_dssp CCEEEEEEEEETTEEEEEE
T ss_pred CEEEEEEEEEeCCEEEEEE
Confidence 8999999999888887765
No 257
>1jjg_A M156R; beta barrel, S1 motif, OB fold, MYXV156R, NESG project, structural genomics, EIF-2A homolog, PSI, protein structure initiative; NMR {Myxoma virus} SCOP: b.40.4.5
Probab=49.26 E-value=73 Score=29.40 Aligned_cols=61 Identities=18% Similarity=0.033 Sum_probs=44.2
Q ss_pred ccCCCCCeEEEEEEEEecCceEEEEecC--CeEEEEEcccc-cccccc---CcCCCCEEEEEEEEEeCC
Q psy14505 1511 NINDKGSLVNGIIKSIDTNKGAIIQLSN--EVEGYLRISEE-DNKHEK---KLKIGENIDVLTVLIDHK 1573 (1619)
Q Consensus 1511 ~~~~~G~~v~g~V~~i~~~~G~~V~l~~--gv~G~i~~~~~-~~~~~~---~~~~Gq~V~~~Vl~vd~~ 1573 (1619)
-.+.+|++.+|.|.-- ++-++|.|.+ |.++++--..- -.+... .=-+|-+|+++|+.+|.-
T Consensus 28 ~~~~~g~VtkGiVy~k--d~~fyV~L~dY~glEaii~dYvnv~~dr~~klkkkLVGKtIkVqVIRvD~l 94 (102)
T 1jjg_A 28 MDLSPGSVHEGIVYFK--DGIFKVRLLGYEGHECILLDYLNYRQDTLDRLKERLVGRVIKTRVVRADGL 94 (102)
T ss_dssp CCCCSSCEEEEEEEEE--TTEEEEECTTTSSCEEEECTTCCSSCCCCCHHHHHHTTCEEEEEEEEECSS
T ss_pred cccCCCceEeeEEEEe--CCEEEEEecCCCCceeeeehhhhhhHHHHHHHHHHhcCceEEEEEEEeccE
Confidence 4567899999999875 6778999987 78888765321 111112 223899999999999976
No 258
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=49.19 E-value=28 Score=32.37 Aligned_cols=53 Identities=17% Similarity=0.271 Sum_probs=42.1
Q ss_pred CCCeEEEEEEEEecCceEEEEecCCeEEEEEccccccccccCcCCCCEEEEEEE
Q psy14505 1515 KGSLVNGIIKSIDTNKGAIIQLSNEVEGYLRISEEDNKHEKKLKIGENIDVLTV 1568 (1619)
Q Consensus 1515 ~G~~v~g~V~~i~~~~G~~V~l~~gv~G~i~~~~~~~~~~~~~~~Gq~V~~~Vl 1568 (1619)
.++...|+|+.....||.+..-.++-.-|+|.+.+... ...+.+||.|.+.+.
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~-~~~L~~G~~V~F~~~ 67 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGD-VDSLELGDMVEYSLS 67 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSC-TTTCCTTCEEEECCC
T ss_pred CCCceeEEEEEEECCccEEecCCCCceEEEEEhhhccc-cCcCCCCCEEEEEEE
Confidence 57889999999976677664444468999999988655 578999999998875
No 259
>3h8z_A FragIle X mental retardation syndrome-related Pro; tudor domains, FXR2, structura genomics, structural genomics consortium, SGC; 1.92A {Homo sapiens} PDB: 3o8v_A 3kuf_A 2bkd_N*
Probab=48.85 E-value=21 Score=35.63 Aligned_cols=97 Identities=12% Similarity=0.112 Sum_probs=62.4
Q ss_pred cceeEEEEEEEEcCCeEEEEEcCCE--EEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeecccCCC
Q psy14505 1341 RGTRLLGKVTNLTDYGAFVEIEKGI--EGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNP 1418 (1619)
Q Consensus 1341 ~G~iv~g~V~~v~~~G~fV~l~~gv--~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~~~~ 1418 (1619)
.|.-++|+|+.+.+.+++|.+.+.. .-.||.+++-- .........|.+||+|+|.--.-|.
T Consensus 14 ~G~~y~a~V~~v~~d~~~V~f~n~w~~~~~vp~~~vRl-pP~~~~~~~f~~gd~VEV~~~~~d~---------------- 76 (128)
T 3h8z_A 14 NGAFYKGFVKDVHEDSVTIFFENNWQSERQIPFGDVRL-PPPADYNKEITEGDEVEVYSRANEQ---------------- 76 (128)
T ss_dssp TSCEEEEEEEEECSSEEEEEETTCTTCCEEEEGGGEEC-CCCC----CCCTTCEEEEEECC-------------------
T ss_pred CCCEEEEEEEEEeCCcEEEEEccccCcceEechhhEEc-CCCcccccCCCCCCEEEEEecCCCC----------------
Confidence 4899999999999999999997654 45788888822 1111223578999999985321110
Q ss_pred CcccccccccceEEEEEEEEEecceEEEeeCC---CeEEEEeCCCCC
Q psy14505 1419 WENFSIIHKKGEKIKGIIKSITDFGIFIGLDG---NIDGLIHLSDLS 1462 (1619)
Q Consensus 1419 ~~~~~~~~~vG~~v~G~V~~i~~~GvfV~~~~---~v~Glv~~sels 1462 (1619)
.+---..|+|+.+...=++|+..+ ...-+|....|.
T Consensus 77 --------ep~gWw~a~I~~~kg~f~~V~y~~~~~~~~EiV~~~rlR 115 (128)
T 3h8z_A 77 --------EPCGWWLARVRMMKGDFYVIEYAACDATYNEIVTLERLR 115 (128)
T ss_dssp --------CCCEEEEEEEEEEETTEEEEEETTC----CEEECGGGEE
T ss_pred --------CcCccEEEEEEEeeCCEEEEEEcCCCCCcceEEehhheE
Confidence 123467899999987777888644 445555544443
No 260
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=48.48 E-value=3.4e+02 Score=30.65 Aligned_cols=255 Identities=9% Similarity=-0.014 Sum_probs=123.9
Q ss_pred CCccccccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCC-CCeEEEEEEeeCccEEEEEeeCceEEEEEccc
Q psy14505 533 PSTEDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKD-EDWINQLFIANTHDYILCFSNYGRLYWLKVWQ 611 (1619)
Q Consensus 533 ~~~~~li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~-~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~e 611 (1619)
+..-..-++...+++.+.+|.|+--++..-.. .....++. .+.+..+....+...|+.-+.+|.++ +++
T Consensus 14 v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~-------~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~---vwd 83 (377)
T 3dwl_C 14 SYEHAFNSQRTEFVTTTATNQVELYEQDGNGW-------KHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY---VYE 83 (377)
T ss_dssp CSCCEECSSSSEEECCCSSSCBCEEEEETTEE-------EECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEE---EC-
T ss_pred EEEEEECCCCCEEEEecCCCEEEEEEccCCce-------EEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEE---EEE
Confidence 33344556677777777888887655442100 01112222 23344444444445566666667644 455
Q ss_pred CCCCCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecC--CCC
Q psy14505 612 IPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLS--NED 689 (1619)
Q Consensus 612 lp~~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lk--e~D 689 (1619)
+.... .-.+...+. .....+..+.-. ++..+++..+.+|.++--.+..-.... ....+. -.+
T Consensus 84 ~~~~~---~~~~~~~~~--~~~~~v~~~~~~-------~~~~~l~~~~~d~~i~iwd~~~~~~~~----~~~~~~~~h~~ 147 (377)
T 3dwl_C 84 KRPDG---TWKQTLVLL--RLNRAATFVRWS-------PNEDKFAVGSGARVISVCYFEQENDWW----VSKHLKRPLRS 147 (377)
T ss_dssp --------CCCCEEECC--CCSSCEEEEECC-------TTSSCCEEEESSSCEEECCC-----CC----CCEEECSSCCS
T ss_pred cCCCC---ceeeeeEec--ccCCceEEEEEC-------CCCCEEEEEecCCeEEEEEECCcccce----eeeEeecccCC
Confidence 54332 011222222 223445555433 566788999999999876654321100 011222 245
Q ss_pred eEEEEEEecCCCeEEEEeCCceEEEEecccccccCC---------CCCCccceecCCCCEEEEEEEecCCCCcEEEEEec
Q psy14505 690 FLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGR---------SARGVIGMRLEKKQKVIALLVSNNQKQSVLTATEN 760 (1619)
Q Consensus 690 ~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r---------~a~Gv~~i~L~~~e~Iv~~~~~~~~~~~ll~~T~~ 760 (1619)
.+..+........++..+.+|.+..+....-....+ ...|.....+.-...|.++...++ ...++..+.+
T Consensus 148 ~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~-~~~l~~~~~d 226 (377)
T 3dwl_C 148 TILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFSPS-GNALAYAGHD 226 (377)
T ss_dssp CEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEECTT-SSCEEEEETT
T ss_pred CeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEECCC-CCEEEEEeCC
Confidence 566655555556677778889887777632111000 011222233333444655554443 5678888888
Q ss_pred CceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecC
Q psy14505 761 GYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVS 820 (1619)
Q Consensus 761 G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~ 820 (1619)
|.++.-.+..-... ......+....+.+..+.. .++..+++..+.+.++.+...
T Consensus 227 ~~i~iwd~~~~~~~-----~~~~~~~~~~~~~v~~~~~-s~~~~~l~~~~~~~~~~~~~~ 280 (377)
T 3dwl_C 227 SSVTIAYPSAPEQP-----PRALITVKLSQLPLRSLLW-ANESAIVAAGYNYSPILLQGN 280 (377)
T ss_dssp TEEC-CEECSTTSC-----EEECCCEECSSSCEEEEEE-EETTEEEEEESSSSEEEECCC
T ss_pred CcEEEEECCCCCCc-----ceeeEeecCCCCceEEEEE-cCCCCEEEEEcCCcEEEEEeC
Confidence 88776554332210 0002222222334444433 345566666677777777665
No 261
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=48.27 E-value=13 Score=41.54 Aligned_cols=39 Identities=21% Similarity=0.226 Sum_probs=32.8
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhhH-HHHHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGAL-YRLVT 898 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~-yr~~~ 898 (1619)
++|.+.|..||||+++++.+++.+|++++..|.. +++++
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 4788899999999999999999999999998754 44444
No 262
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=48.27 E-value=6e+02 Score=34.39 Aligned_cols=264 Identities=10% Similarity=-0.023 Sum_probs=0.0
Q ss_pred cCcceEEEEccCccEEeccCchhhhcccCCCC-----------------------------ccccccCCCCeEEEEEEee
Q psy14505 540 ASQDMVITLSNLGYIKSQPISEYRAQKRGGRG-----------------------------KKAMMTKDEDWINQLFIAN 590 (1619)
Q Consensus 540 ~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g-----------------------------~~~~~~k~~D~~~~~~~~~ 590 (1619)
++...+++.+.+|.++--+.........-... ........+..+..+....
T Consensus 892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~sp 971 (1249)
T 3sfz_A 892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSP 971 (1249)
T ss_dssp TTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSEEEEEESSCCEEEECCSCEEEEEECT
T ss_pred CCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcceEEEecCcceEEEcccCcEEEEEEcC
Q ss_pred CccEEEEEeeCceEEEEEcccCCCCCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCC
Q psy14505 591 THDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLS 670 (1619)
Q Consensus 591 t~d~llifT~~Gkv~~i~v~elp~~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~ 670 (1619)
....+++-+..|.++.... ..|..+..+. .....+..+... ++..+++..+.+|.++--+..
T Consensus 972 ~g~~l~~g~~~g~i~i~d~---------~~~~~~~~~~--~h~~~v~~l~~s-------~dg~~l~s~~~dg~i~vwd~~ 1033 (1249)
T 3sfz_A 972 HLEYVAFGDEDGAIKIIEL---------PNNRVFSSGV--GHKKAVRHIQFT-------ADGKTLISSSEDSVIQVWNWQ 1033 (1249)
T ss_dssp TSSEEEEEETTSCCEEEET---------TTTSCEEECC--CCSSCCCCEEEC-------SSSSCEEEECSSSBEEEEETT
T ss_pred CCCEEEEEcCCCCEEEEEc---------CCCceeeecc--cCCCceEEEEEC-------CCCCEEEEEcCCCEEEEEECC
Q ss_pred CCcCCCCCCceeeecCCCCeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEecCC
Q psy14505 671 NFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQ 750 (1619)
Q Consensus 671 ~~~~~~r~G~~~~~lke~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~ 750 (1619)
.-.. ..+.....-+.......+..++..+..|.+..+.. ..|...-.+.....-+..+.+.+.
T Consensus 1034 ~~~~--------~~~~~~~~~v~~~~~~~~~~l~~~~~dg~v~vwd~---------~~~~~~~~~~~~~~~v~~~~~s~d 1096 (1249)
T 3sfz_A 1034 TGDY--------VFLQAHQETVKDFRLLQDSRLLSWSFDGTVKVWNV---------ITGRIERDFTCHQGTVLSCAISSD 1096 (1249)
T ss_dssp TTEE--------ECCBCCSSCEEEEEECSSSEEEEEESSSEEEEEET---------TTTCCCEEEECCSSCCCCEEECSS
T ss_pred CCce--------EEEecCCCcEEEEEEcCCCcEEEEECCCcEEEEEC---------CCCceeEEEcccCCcEEEEEECCC
Q ss_pred CCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCcccccCC---
Q psy14505 751 KQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSEIRKMGR--- 827 (1619)
Q Consensus 751 ~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~eI~~~gr--- 827 (1619)
...++..+.+|.++.-.+. .|.....+....+.+.++....++..++..+.+|.+..++...-.....
T Consensus 1097 ~~~l~s~s~d~~v~iwd~~---------~~~~~~~l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~ 1167 (1249)
T 3sfz_A 1097 ATKFSSTSADKTAKIWSFD---------LLSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAP 1167 (1249)
T ss_dssp SSSCEEECCSSCCCEECSS---------SSSCSBCCCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCC
T ss_pred CCEEEEEcCCCcEEEEECC---------CcceeeeeccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecc
Q ss_pred ---------CCCCeEEEEcCCCceEEEEE
Q psy14505 828 ---------STQGVILITVENKSKLCGVQ 847 (1619)
Q Consensus 828 ---------~a~Gv~~i~L~~~d~v~~~~ 847 (1619)
....|..+...++...+...
T Consensus 1168 ~~~~~~~~~~~~~v~~l~fs~dg~~l~s~ 1196 (1249)
T 3sfz_A 1168 ISVEEGTATHGGWVTDVCFSPDSKTLVSA 1196 (1249)
T ss_dssp CC-------CCSCCCEEEECTTSSCEEEE
T ss_pred ccccccccccCceEEEEEECCCCCEEEEC
No 263
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=47.99 E-value=3.2e+02 Score=30.14 Aligned_cols=242 Identities=12% Similarity=0.012 Sum_probs=114.3
Q ss_pred cccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCc
Q psy14505 538 LIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSR 617 (1619)
Q Consensus 538 li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~ 617 (1619)
.-++...+++.+.+|.++.......... .....................|+..+.+|.+.. +++...
T Consensus 94 ~s~dg~~l~s~~~d~~i~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~---~d~~~~-- 160 (340)
T 4aow_A 94 ISSDGQFALSGSWDGTLRLWDLTTGTTT--------RRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKL---WNTLGV-- 160 (340)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTTTEEE--------EEEECCSSCEEEEEECTTSSCEEEEETTSCEEE---ECTTSC--
T ss_pred ECCCCCEEEEEcccccceEEeeccccee--------eeecCCCCceeEEEEeecCccceeecCCCeEEE---EEeCCC--
Confidence 3456667778888898887555432111 011112223333333444455555566666543 333221
Q ss_pred cCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCC-CCeEEEEEE
Q psy14505 618 NSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSN-EDFLIGAAL 696 (1619)
Q Consensus 618 ~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke-~D~l~~~~~ 696 (1619)
...... . ......+..+... ......+++..+.+|.++.-..... .....+.. .+.+..+..
T Consensus 161 ---~~~~~~-~-~~~~~~v~~~~~~-----~~~~~~~~~s~~~d~~i~i~d~~~~-------~~~~~~~~h~~~v~~~~~ 223 (340)
T 4aow_A 161 ---CKYTVQ-D-ESHSEWVSCVRFS-----PNSSNPIIVSCGWDKLVKVWNLANC-------KLKTNHIGHTGYLNTVTV 223 (340)
T ss_dssp ---EEEEEC-S-SSCSSCEEEEEEC-----SCSSSCEEEEEETTSCEEEEETTTT-------EEEEEECCCSSCEEEEEE
T ss_pred ---ceEEEE-e-ccccCcccceEEc-----cCCCCcEEEEEcCCCEEEEEECCCC-------ceeeEecCCCCcEEEEEE
Confidence 111111 1 1123334443322 1134567788889999987766432 12222332 334544444
Q ss_pred ecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEecCCCCcEEEEEecCceeEEeccccccccc
Q psy14505 697 TDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNR 776 (1619)
Q Consensus 697 ~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R 776 (1619)
..+...++..+.+|.+..+....- ..+..+...+.|..+...+ +.+++..+.+|.++.-.+..-.....
T Consensus 224 s~~~~~l~s~s~Dg~i~iwd~~~~---------~~~~~~~~~~~v~~~~~~~--~~~~~~~~~d~~i~iwd~~~~~~~~~ 292 (340)
T 4aow_A 224 SPDGSLCASGGKDGQAMLWDLNEG---------KHLYTLDGGDIINALCFSP--NRYWLCAATGPSIKIWDLEGKIIVDE 292 (340)
T ss_dssp CTTSSEEEEEETTCEEEEEETTTT---------EEEEEEECSSCEEEEEECS--SSSEEEEEETTEEEEEETTTTEEEEE
T ss_pred CCCCCEEEEEeCCCeEEEEEeccC---------ceeeeecCCceEEeeecCC--CCceeeccCCCEEEEEECCCCeEEEe
Confidence 444455666678888777655322 2223344445555554443 36788888888877655432111100
Q ss_pred ccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecC
Q psy14505 777 GTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVS 820 (1619)
Q Consensus 777 ~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~ 820 (1619)
..............+.+.++....++..++..+.+|.+..++++
T Consensus 293 ~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~ 336 (340)
T 4aow_A 293 LKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336 (340)
T ss_dssp ECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEE
T ss_pred ccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCC
Confidence 00011111111112344444443344456666777776665543
No 264
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=47.91 E-value=7.1 Score=45.51 Aligned_cols=33 Identities=30% Similarity=0.417 Sum_probs=30.2
Q ss_pred EEEecCCcCCCCchhHHHHHHHhCCEEechhhH
Q psy14505 861 VITIDGPTASGKGTVAQLVASKLGFHYLDSGAL 893 (1619)
Q Consensus 861 iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~~ 893 (1619)
.|.+.|+.|+||++.+..||+++++.++|.+.+
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 677889999999999999999999999998665
No 265
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=47.06 E-value=5.6e+02 Score=32.76 Aligned_cols=246 Identities=12% Similarity=-0.027 Sum_probs=122.4
Q ss_pred cccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCC-CCeEEEEEEeeC--ccEEEEEeeCceEEEEEcccCCC
Q psy14505 538 LIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKD-EDWINQLFIANT--HDYILCFSNYGRLYWLKVWQIPQ 614 (1619)
Q Consensus 538 li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~-~D~~~~~~~~~t--~d~llifT~~Gkv~~i~v~elp~ 614 (1619)
.-++.+.+++.+.+|.|+--+... +.+.....+.. .+.+..+..... ...|+.-+.+|.++...+. .
T Consensus 17 ~s~dg~~latg~~dg~I~vwd~~~-------~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~---~ 86 (753)
T 3jro_A 17 LDYYGKRLATCSSDKTIKIFEVEG-------ETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEE---N 86 (753)
T ss_dssp CCSSSCCEEEEETTTEEEEEEEET-------TEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEE---T
T ss_pred ECCCCCeEEEEECCCcEEEEecCC-------CCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECC---C
Confidence 345667788888899887655431 00111112222 223433333333 5677777778877665432 2
Q ss_pred CCccCCCccceecccCCCCceEEEEEecCCCCCCCCC--CcEEEEEeCCceEEEeeCCCCcCCCCCCceeeec-CCCCeE
Q psy14505 615 GSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPK--NNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNL-SNEDFL 691 (1619)
Q Consensus 615 ~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~--e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~l-ke~D~l 691 (1619)
.. -.++..+. .....+..+... ++ ...+++.+.+|.++-.++..-.... ...+ .....+
T Consensus 87 ~~----~~~~~~~~--~h~~~V~~v~~s-------p~~~~~~l~sgs~dg~I~vwdl~~~~~~~-----~~~~~~~~~~v 148 (753)
T 3jro_A 87 GR----WSQIAVHA--VHSASVNSVQWA-------PHEYGPLLLVASSDGKVSVVEFKENGTTS-----PIIIDAHAIGV 148 (753)
T ss_dssp TE----EEEEEEEC--CCSSCEEEEEEC-------CGGGCSEEEEEETTSEEEEEECCSSSCCC-----CEEEECCSSCE
T ss_pred Cc----cccccccc--CCCCCeEEEEEC-------CCCCCCEEEEEeCCCcEEEEEeecCCCcc-----eeEeecCCCce
Confidence 11 01222222 233455555433 44 6789999999999998875432111 1111 123344
Q ss_pred EEEEEec-------------CCCeEEEEeCCceEEEEecccccccCCCCCCccceecCC-CCEEEEEEEecCC--CCcEE
Q psy14505 692 IGAALTD-------------GSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEK-KQKVIALLVSNNQ--KQSVL 755 (1619)
Q Consensus 692 ~~~~~~~-------------~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~-~e~Iv~~~~~~~~--~~~ll 755 (1619)
..+.... ....++..+.+|.+..+....-. ..+.....+.. ...|.++...++. ...++
T Consensus 149 ~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~-----~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~ 223 (753)
T 3jro_A 149 NSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA-----QTYVLESTLEGHSDWVRDVAWSPTVLLRSYLA 223 (753)
T ss_dssp EEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT-----TEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred EEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc-----ccceeeeeecCCCCcEEEEEeccCCCCCCEEE
Confidence 4444433 24567778888987777653210 01111122322 2335444433321 45677
Q ss_pred EEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecC
Q psy14505 756 TATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVS 820 (1619)
Q Consensus 756 ~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~ 820 (1619)
..+.+|.++.-.+..-.... ...........+.+.++.....+..++..+.+|.+..++.+
T Consensus 224 s~s~Dg~I~iwd~~~~~~~~----~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~ 284 (753)
T 3jro_A 224 SVSQDRTCIIWTQDNEQGPW----KKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (753)
T ss_dssp EEESSSCEEEEEESSSSSCC----BCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCC
T ss_pred EEecCCEEEEecCCCCCCcc----eeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecC
Confidence 77788888776654321100 00111111112333333333344456666778887777655
No 266
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=45.81 E-value=4.1e+02 Score=30.81 Aligned_cols=187 Identities=15% Similarity=0.103 Sum_probs=102.1
Q ss_pred ccCCCccceecccCCCCceEEEEEecCCCCCCCC-CCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEE
Q psy14505 617 RNSRGKPIINMFSLKNKEKITVILPLSNNKRDFP-KNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAA 695 (1619)
Q Consensus 617 ~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~-~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~ 695 (1619)
|...|..+..+..- -...|..+... + +..+++..+.+|.++--+......... -.....+.-...+..+.
T Consensus 48 w~~~g~~~~~~~~~-h~~~V~~~~~s-------~~~~~~l~s~s~dg~v~vwd~~~~~~~~~-~~~~~~~~h~~~v~~~~ 118 (437)
T 3gre_A 48 GNLRGKLIATLMEN-EPNSITSSAVS-------PGETPYLITGSDQGVIKIWNLKEIIVGEV-YSSSLTYDCSSTVTQIT 118 (437)
T ss_dssp GGCCCCEEEEECTT-TTSCEEEEEEE-------CSSSCEEEEEETTSEEEEEEHHHHHTTCC-CSCSEEEECSSCEEEEE
T ss_pred ccccceEEeeeccC-CCCceEEEEEC-------CCCCCEEEEecCCceEEEeECcccccCcc-cceeeeccCCCCEEEEE
Confidence 44556666665311 13456666544 5 678999999999999877644211100 00012222345666666
Q ss_pred EecCCCeEEEEeCCceEEEEeccccccc--CCCCC--CccceecC---CCCEEEEEEEec-CCCCcEEEEEecCceeEEe
Q psy14505 696 LTDGSYDIMLFSDSGKAVRFNENSVRAM--GRSAR--GVIGMRLE---KKQKVIALLVSN-NQKQSVLTATENGYGKRTL 767 (1619)
Q Consensus 696 ~~~~~d~lll~T~~G~~~~~~~~eIp~~--~r~a~--Gv~~i~L~---~~e~Iv~~~~~~-~~~~~ll~~T~~G~~Kr~~ 767 (1619)
.......++..+.+|.+..+....-... -+... .+..+.+. .++.++.+.... +....++..+.+|.++.-.
T Consensus 119 ~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd 198 (437)
T 3gre_A 119 MIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFD 198 (437)
T ss_dssp ECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEE
T ss_pred EeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEe
Confidence 6666667777888888776655311000 00001 12223333 355666665432 2245677788888887766
Q ss_pred cccccccccccccceeeeecc--CCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 768 IKEYTKHNRGTKGIISIKTNK--RNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 768 l~e~~~~~R~~kG~~~ikl~~--~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
+.. +.....+.. ..+.+.++........++..+.+|.+..++...
T Consensus 199 ~~~---------~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 245 (437)
T 3gre_A 199 IRT---------LERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF 245 (437)
T ss_dssp TTT---------CCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT
T ss_pred CCC---------CeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC
Confidence 533 222222322 134555555544455677788888888887653
No 267
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=45.52 E-value=16 Score=42.28 Aligned_cols=36 Identities=31% Similarity=0.465 Sum_probs=31.0
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechhh--HHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSGA--LYR 895 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg~--~yr 895 (1619)
.+|.+.|+.|+||++.+..+|++++..+++.+. +||
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qvY~ 48 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDSALIYK 48 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTTBT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEecccccccc
Confidence 367888999999999999999999998887655 566
No 268
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=45.46 E-value=77 Score=38.73 Aligned_cols=32 Identities=22% Similarity=0.308 Sum_probs=26.8
Q ss_pred cEEEecCCcCCCCchhHHHHHHHhCCEEechh
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKLGFHYLDSG 891 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l~~~~~dtg 891 (1619)
..|.+-|.+|+||+++++.+++.+++.++|+.
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~ 71 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLNFIGVPTR 71 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhccCCCce
Confidence 35667789999999999999999987777764
No 269
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=45.29 E-value=58 Score=29.62 Aligned_cols=64 Identities=17% Similarity=0.166 Sum_probs=46.7
Q ss_pred EEEEEEEEEecce-EEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeee
Q psy14505 1431 KIKGIIKSITDFG-IFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIK 1499 (1619)
Q Consensus 1431 ~v~G~V~~i~~~G-vfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK 1499 (1619)
.+.|.|.+..+.| +.|++.+|..-+||.+--...+. -...+||.|.+.+...|..+++|..-.|
T Consensus 15 e~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~-----I~Il~GD~V~ve~~~yd~~kgrIi~R~~ 79 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHY-----IRILPEDRVVVELSPYDLSRGRIVYRYK 79 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTT-----CCCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCC-----ccCCCCCEEEEEECccCCCcEEEEEEcC
Confidence 4689999999666 56899998777887652221111 1268999999999888888888876543
No 270
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=45.17 E-value=1e+02 Score=26.89 Aligned_cols=53 Identities=19% Similarity=0.199 Sum_probs=41.9
Q ss_pred CCccccccCCCEEEEEEEEeecccceEEEeeecccCCCCcccccccccceEEEEEEEEEecc--eEEEeeCCCeEEEEeC
Q psy14505 1381 VTPSKIVQLNDTVEIMILEINEERRRISLGMKQCKDNPWENFSIIHKKGEKIKGIIKSITDF--GIFIGLDGNIDGLIHL 1458 (1619)
Q Consensus 1381 ~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~~~~~~~~~~~~~~~vG~~v~G~V~~i~~~--GvfV~~~~~v~Glv~~ 1458 (1619)
..+...|++||.|.|+= .-|.-+.|+|++|... -|+|+|+++..-.+.-
T Consensus 8 ~~~~~~f~vGddVLA~w-----------------------------tDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~ 58 (66)
T 2eqj_A 8 KKPACKFEEGQDVLARW-----------------------------SDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLW 58 (66)
T ss_dssp CCCCCCSCTTCEEEEEC-----------------------------TTSCEEEEEEEEEETTTTEEEEEETTTEEEEEET
T ss_pred ccccccccCCCEEEEEE-----------------------------ccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEe
Confidence 34556789999887751 2377889999999864 5999999999999987
Q ss_pred CCCC
Q psy14505 1459 SDLS 1462 (1619)
Q Consensus 1459 sels 1462 (1619)
.++.
T Consensus 59 kdi~ 62 (66)
T 2eqj_A 59 KDIQ 62 (66)
T ss_dssp TTEE
T ss_pred eccc
Confidence 7765
No 271
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=45.09 E-value=4.2e+02 Score=30.93 Aligned_cols=64 Identities=17% Similarity=0.196 Sum_probs=45.2
Q ss_pred CCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEecCCCeEEEEeCCceEEEEeccc
Q psy14505 650 PKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENS 719 (1619)
Q Consensus 650 ~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~e 719 (1619)
+...++.++|+.||+--.+++.-.. ..+.-=..|.+.....-+...-++.++.+|+++.+.+++
T Consensus 269 ~kygviyviTK~G~ihlyDleTgt~------i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v~v~~ 332 (365)
T 2xzh_A 269 EKHDVVFLITKYGYIHLYDLETGTC------IYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 332 (365)
T ss_dssp TTTTEEEEEETTSEEEEEETTTCCE------EEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEEEECT
T ss_pred ccCCEEEEEeCCcEEEEEEcccCcE------EEEeccCCCceEEecccCCCCcEEEEcCCCEEEEEEECc
Confidence 4678999999999999988864211 112112345554444445567899999999999999876
No 272
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=44.97 E-value=5.9e+02 Score=32.36 Aligned_cols=237 Identities=13% Similarity=0.034 Sum_probs=125.4
Q ss_pred cccccCcceEEEEccCccEEeccCchhhhcccCCCCccccccC-CCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCC
Q psy14505 536 EDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTK-DEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQ 614 (1619)
Q Consensus 536 ~~li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k-~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~ 614 (1619)
-..-++.+.+++.+.+|.|+--+..+-.. ...+. ....+..+....+...|+.-+++|.++-. ++..
T Consensus 19 i~~sp~~~~la~~~~~g~v~iwd~~~~~~---------~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw---~~~~ 86 (814)
T 3mkq_A 19 IDFHPTEPWVLTTLYSGRVEIWNYETQVE---------VRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVF---NYNT 86 (814)
T ss_dssp EEECSSSSEEEEEETTSEEEEEETTTTEE---------EEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEE---ETTT
T ss_pred EEECCCCCEEEEEeCCCEEEEEECCCCce---------EEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEE---ECCC
Confidence 34456778888888899888765443211 11111 12234444445566677777777876554 4432
Q ss_pred CCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecC-CCCeEEE
Q psy14505 615 GSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLS-NEDFLIG 693 (1619)
Q Consensus 615 ~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lk-e~D~l~~ 693 (1619)
|..+..+- .....+..+.-. ++.+.++..+.+|.++.-....- +.....+. ....+..
T Consensus 87 ------~~~~~~~~--~~~~~v~~~~~s-------~~~~~l~~~~~dg~i~vw~~~~~------~~~~~~~~~~~~~v~~ 145 (814)
T 3mkq_A 87 ------GEKVVDFE--AHPDYIRSIAVH-------PTKPYVLSGSDDLTVKLWNWENN------WALEQTFEGHEHFVMC 145 (814)
T ss_dssp ------CCEEEEEE--CCSSCEEEEEEC-------SSSSEEEEEETTSEEEEEEGGGT------SEEEEEEECCSSCEEE
T ss_pred ------CcEEEEEe--cCCCCEEEEEEe-------CCCCEEEEEcCCCEEEEEECCCC------ceEEEEEcCCCCcEEE
Confidence 33333332 123445555433 56778999999999998776321 11112222 2345555
Q ss_pred EEEec-CCCeEEEEeCCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEec-CCCCcEEEEEecCceeEEecccc
Q psy14505 694 AALTD-GSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSN-NQKQSVLTATENGYGKRTLIKEY 771 (1619)
Q Consensus 694 ~~~~~-~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~-~~~~~ll~~T~~G~~Kr~~l~e~ 771 (1619)
+.... +...++..+.+|.+..+....-. ....+.......+..+...+ +....+++.+.+|.++...+..
T Consensus 146 ~~~~p~~~~~l~~~~~dg~v~vwd~~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~- 217 (814)
T 3mkq_A 146 VAFNPKDPSTFASGCLDRTVKVWSLGQST-------PNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQT- 217 (814)
T ss_dssp EEEETTEEEEEEEEETTSEEEEEETTCSS-------CSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTT-
T ss_pred EEEEcCCCCEEEEEeCCCeEEEEECCCCc-------ceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCC-
Confidence 55444 34456667778887777653211 11111112212233333322 1245667777778776655421
Q ss_pred cccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 772 TKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 772 ~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
|.....+....+.+..+........++..+.+|.+..++...
T Consensus 218 --------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~ 259 (814)
T 3mkq_A 218 --------KSCVATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWNSST 259 (814)
T ss_dssp --------TEEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT
T ss_pred --------CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 222233332234455554444455677778888888887654
No 273
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=44.86 E-value=3.6e+02 Score=29.91 Aligned_cols=197 Identities=9% Similarity=-0.034 Sum_probs=105.4
Q ss_pred CccEEEEEeeCceEEEEEcccCCCCCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCC
Q psy14505 591 THDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLS 670 (1619)
Q Consensus 591 t~d~llifT~~Gkv~~i~v~elp~~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~ 670 (1619)
....|+.-+.+|.++.. ++.. |.++..+- .....+..+.-. ++..+++..+.+|.++.-++.
T Consensus 43 ~~~~l~~~~~dg~i~vw---d~~~------~~~~~~~~--~h~~~v~~~~~~-------~~~~~l~s~~~dg~i~iwd~~ 104 (369)
T 3zwl_B 43 EGDLLFSCSKDSSASVW---YSLN------GERLGTLD--GHTGTIWSIDVD-------CFTKYCVTGSADYSIKLWDVS 104 (369)
T ss_dssp TSCEEEEEESSSCEEEE---ETTT------CCEEEEEC--CCSSCEEEEEEC-------TTSSEEEEEETTTEEEEEETT
T ss_pred CCCEEEEEeCCCEEEEE---eCCC------chhhhhhh--hcCCcEEEEEEc-------CCCCEEEEEeCCCeEEEEECC
Confidence 34445555556665543 3432 33444332 123456555433 567889999999999988775
Q ss_pred CCcCCCCCCceeeecCCCCeEEEEEEecCCCeEEEEeCC-----ceEEEEecccccccCC----CCCCccceecCCC-CE
Q psy14505 671 NFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDS-----GKAVRFNENSVRAMGR----SARGVIGMRLEKK-QK 740 (1619)
Q Consensus 671 ~~~~~~r~G~~~~~lke~D~l~~~~~~~~~d~lll~T~~-----G~~~~~~~~eIp~~~r----~a~Gv~~i~L~~~-e~ 740 (1619)
... ....+.....+..+........++..+.. |.+..+....-..... ....+..+....+ +.
T Consensus 105 ~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 105 NGQ-------CVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp TCC-------EEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred CCc-------EEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 321 22233345566666666666667777776 8877776543211100 0001111111122 24
Q ss_pred EEEEEEecCCCCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecC
Q psy14505 741 VIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVS 820 (1619)
Q Consensus 741 Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~ 820 (1619)
+..+...++ ...++..+.+|.+....+.. .+.....+....+.+..+........++..+.+|.+..++..
T Consensus 178 ~~~~~~~~~-~~~l~~~~~dg~i~i~d~~~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~ 248 (369)
T 3zwl_B 178 ATVAGWSTK-GKYIIAGHKDGKISKYDVSN--------NYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVS 248 (369)
T ss_dssp EEEEEECGG-GCEEEEEETTSEEEEEETTT--------TTEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred eeEEEEcCC-CCEEEEEcCCCEEEEEECCC--------CcEeEEEEecCCCceeEEEECCCCCEEEEecCCceEEEEECC
Confidence 555544443 45677778888887666532 012222333223455555554455567777888888888765
Q ss_pred c
Q psy14505 821 E 821 (1619)
Q Consensus 821 e 821 (1619)
.
T Consensus 249 ~ 249 (369)
T 3zwl_B 249 T 249 (369)
T ss_dssp T
T ss_pred C
Confidence 3
No 274
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=42.43 E-value=28 Score=40.30 Aligned_cols=56 Identities=13% Similarity=0.094 Sum_probs=38.2
Q ss_pred CeEEeccccC-----eeeecCCCeEEEEEcCHHHHHHhchHHHHhc-C-------------CCCCHHHHHHHHHh
Q psy14505 975 GLVADGRDMG-----TTVFPDAFLKIFLTADIKQRTKRRYKQLMQK-G-------------FSVSMSDLLINLIK 1030 (1619)
Q Consensus 975 ~~V~~GRd~~-----~~v~p~a~~kifl~A~~e~Ra~Rr~~~l~~~-~-------------~~~~~~~~~~~i~~ 1030 (1619)
-+|+||=... ..+....+++|||+|+.+.+.+|+.++.... + .+.+.+++.+.+..
T Consensus 197 ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd~~~r~~~~~~~~~~g~s~e~a~~~v~~ 271 (312)
T 3aez_A 197 ILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQAVVAARE 271 (312)
T ss_dssp EEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTTTGGGSTTSTTGGGTTCCHHHHHHHHHH
T ss_pred EEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHhccccCcchhhhcccCCCHHHHHHHHHH
Confidence 4677775332 1233446799999999999999988775431 1 25688888877653
No 275
>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5
Probab=40.81 E-value=42 Score=30.51 Aligned_cols=63 Identities=22% Similarity=0.198 Sum_probs=44.4
Q ss_pred eEEEEEEEEcCCe-EEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEee
Q psy14505 1344 RLLGKVTNLTDYG-AFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGM 1411 (1619)
Q Consensus 1344 iv~g~V~~v~~~G-~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSl 1411 (1619)
.++|+|++..+.| +.|++.+|..-++|++=--. .-.-...+||.|.+.+...|..+++|....
T Consensus 15 e~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~R-----k~~I~Il~GD~V~ve~~~yd~~kgrIi~R~ 78 (79)
T 3i4o_A 15 EVEGRVVEPLPNAMFRIELENGHKVLAHISGKMR-----QHYIRILPEDRVVVELSPYDLSRGRIVYRY 78 (79)
T ss_dssp EEEEEEEEEETTTEEEEEETTSCEEEEEECHHHH-----HTTCCCCTTCEEEEEEETTEEEEEEEEEEC
T ss_pred EEEEEEEEEcCCCEEEEEeCCCCEEEEEeCccee-----cCCccCCCCCEEEEEECccCCCcEEEEEEc
Confidence 3679999999776 46899888666666653211 001125689999999988888888887654
No 276
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=40.37 E-value=82 Score=27.87 Aligned_cols=53 Identities=15% Similarity=0.159 Sum_probs=38.3
Q ss_pred eEEEEEEEEec--CceEEEEecCCeEEEEEccccccccccCcCCCCEEEEEEEEE
Q psy14505 1518 LVNGIIKSIDT--NKGAIIQLSNEVEGYLRISEEDNKHEKKLKIGENIDVLTVLI 1570 (1619)
Q Consensus 1518 ~v~g~V~~i~~--~~G~~V~l~~gv~G~i~~~~~~~~~~~~~~~Gq~V~~~Vl~v 1570 (1619)
...|+|+.-.. .||.+..-.++-.-|+|.+.+.......+.+||.|.+.+..=
T Consensus 5 ~~~G~Vk~fn~~kGfGFI~~~~g~~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~ 59 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFGFITPEDGSKDVFVHFSAIQTNGFKTLAEGQRVEFEITNG 59 (71)
T ss_dssp CEEEEEEEEETTTTEEEEEETTCCCCEEEEGGGBCCSSCCCCCTTCEEEEEEEEE
T ss_pred cccEEEEEEECCCCcEEEecCCCCccEEEEhHHcccccCcCCCCCCEEEEEEEEC
Confidence 46788888753 466544433347889999998755446799999999998753
No 277
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=40.35 E-value=40 Score=33.83 Aligned_cols=43 Identities=16% Similarity=0.268 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHH-HHHHHHHHHHHHH
Q psy14505 471 EQKKIINKYENVIKKVIDLTDILSNSKRII-EIITDELNIIKNK 513 (1619)
Q Consensus 471 e~~~l~~e~~~l~~~i~~l~~iL~~~~~~~-~~i~~el~~ik~~ 513 (1619)
....+.++++.+.++++.+++-++.++..| ++|-.||+.|.++
T Consensus 55 ql~~v~kdi~~a~~eL~~m~~~i~~ekP~WKKiWE~EL~~VceE 98 (141)
T 3okq_A 55 KLETVSKDLENAQADVLKLQEFIDTEKPHWKKTWEAELDKVCEE 98 (141)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 345678889999999999999999999998 7999999999864
No 278
>2xzh_A Clathrin heavy chain 1; endocytosis, endocytosis inhibition; HET: VH2; 1.69A {Homo sapiens} PDB: 2xzg_A* 3gc3_B 1utc_A 3gd1_I 1c9i_A 1c9l_A
Probab=40.13 E-value=2.1e+02 Score=33.32 Aligned_cols=74 Identities=15% Similarity=0.170 Sum_probs=46.1
Q ss_pred CCEEEEEEEecCCCCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEE
Q psy14505 738 KQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRT 817 (1619)
Q Consensus 738 ~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf 817 (1619)
+|.-+++.+.+- .+-++++|+.|++--..+.. |..++.-+=..|.+-....-+...-++.++.+|+++.+
T Consensus 259 ~DFPVamqvs~k-ygviyviTK~G~ihlyDleT---------gt~i~~nrIS~d~iF~ta~~~~~~Gi~~Vnr~GqVl~v 328 (365)
T 2xzh_A 259 NDFPVAMQISEK-HDVVFLITKYGYIHLYDLET---------GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSV 328 (365)
T ss_dssp TCCEEEEEEETT-TTEEEEEETTSEEEEEETTT---------CCEEEEEECCSSCEEEEEEEGGGTEEEEEETTCEEEEE
T ss_pred CCceEEEEeccc-CCEEEEEeCCcEEEEEEccc---------CcEEEEeccCCCceEEecccCCCCcEEEEcCCCEEEEE
Confidence 788888876665 46788999999987665421 33433322223333333333444567777788877777
Q ss_pred ecCc
Q psy14505 818 RVSE 821 (1619)
Q Consensus 818 ~~~e 821 (1619)
.+++
T Consensus 329 ~v~~ 332 (365)
T 2xzh_A 329 CVEE 332 (365)
T ss_dssp EECT
T ss_pred EECc
Confidence 7665
No 279
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=39.95 E-value=1.3e+02 Score=26.23 Aligned_cols=36 Identities=17% Similarity=0.341 Sum_probs=30.3
Q ss_pred cccceeEEEEEEEEcC--CeEEEEEcCCEEEEEecccc
Q psy14505 1339 YPRGTRLLGKVTNLTD--YGAFVEIEKGIEGLVHISEM 1374 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~--~G~fV~l~~gv~GlV~~sel 1374 (1619)
..-|..+.|+|++|.. .-|+|+++++..-.+...+|
T Consensus 24 wtDGl~Y~gtI~~V~~~~gtC~V~F~D~s~~w~~~kdi 61 (66)
T 2eqj_A 24 WSDGLFYLGTIKKINILKQSCFIIFEDSSKSWVLWKDI 61 (66)
T ss_dssp CTTSCEEEEEEEEEETTTTEEEEEETTTEEEEEETTTE
T ss_pred EccCcEEEeEEEEEccCCcEEEEEEccCCEEEEEeecc
Confidence 3457888999999986 35899999999999988777
No 280
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=39.94 E-value=4.6e+02 Score=29.73 Aligned_cols=295 Identities=8% Similarity=0.002 Sum_probs=139.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH---hCCCCCCCCccccccccCCCCccccccCcceEEEE
Q psy14505 472 QKKIINKYENVIKKVIDLTDILSNSKRIIEIITDELNIIKNK---YGSHKKNIRRSEIILNAINPSTEDLIASQDMVITL 548 (1619)
Q Consensus 472 ~~~l~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~~---f~~~~~~~RrT~I~~~~~~~~~~~li~~e~~~v~l 548 (1619)
...++.|.+.|..++.+.+.-+.+. ++..+.+. ++......++| +..-...+..-..-++...+++.
T Consensus 13 ~~~~~~~~~~l~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~-l~gH~~~V~~~~~s~d~~~l~s~ 82 (354)
T 2pbi_B 13 LASLKSEAESLKGKLEEERAKLHDV---------ELHQVAERVEALGQFVMKTRRT-LKGHGNKVLCMDWCKDKRRIVSS 82 (354)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCC---------CHHHHTTTSCCCCCCCCCEEEE-EECCSSCEEEEEECTTSSEEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcCc---------cHHHhccCCccccccccEEEEE-ecCCCCeEEEEEECCCCCEEEEE
Confidence 4446777777777777665544431 22223222 22100001222 11112233334455677788889
Q ss_pred ccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCccCCCccceecc
Q psy14505 549 SNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMF 628 (1619)
Q Consensus 549 s~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~~~G~~i~~ll 628 (1619)
+.+|.++--+........ .... ....+..+....+...++.-+.+|.+... +++.............+.
T Consensus 83 s~Dg~v~vWd~~~~~~~~-------~~~~-~~~~v~~~~~sp~g~~lasg~~d~~i~v~---~~~~~~~~~~~~~~~~~~ 151 (354)
T 2pbi_B 83 SQDGKVIVWDSFTTNKEH-------AVTM-PCTWVMACAYAPSGCAIACGGLDNKCSVY---PLTFDKNENMAAKKKSVA 151 (354)
T ss_dssp ETTSEEEEEETTTCCEEE-------EEEC-SSSCCCEEEECTTSSEEEEESTTSEEEEE---ECCCCTTCCSGGGCEEEE
T ss_pred eCCCeEEEEECCCCCcce-------EEec-CCCCEEEEEECCCCCEEEEeeCCCCEEEE---EEeccccccccccceeee
Confidence 999988876543321110 0111 11223333334445555555556655443 333221111111112111
Q ss_pred cCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCC-CCeEEEEEEecC--CCeEEE
Q psy14505 629 SLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSN-EDFLIGAALTDG--SYDIML 705 (1619)
Q Consensus 629 ~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke-~D~l~~~~~~~~--~d~lll 705 (1619)
.-...+..+.-. ++...++..+.+|.++--++..- .....+.. ...+..+..... ...++.
T Consensus 152 --~h~~~v~~~~~~-------~~~~~l~t~s~D~~v~lwd~~~~-------~~~~~~~~h~~~v~~~~~~~~~~g~~l~s 215 (354)
T 2pbi_B 152 --MHTNYLSACSFT-------NSDMQILTASGDGTCALWDVESG-------QLLQSFHGHGADVLCLDLAPSETGNTFVS 215 (354)
T ss_dssp --ECSSCEEEEEEC-------SSSSEEEEEETTSEEEEEETTTC-------CEEEEEECCSSCEEEEEECCCSSCCEEEE
T ss_pred --ccCCcEEEEEEe-------CCCCEEEEEeCCCcEEEEeCCCC-------eEEEEEcCCCCCeEEEEEEeCCCCCEEEE
Confidence 122334444332 56678999999999998876432 11222222 233433333322 245667
Q ss_pred EeCCceEEEEecccccccCCCCCCccceecCC-CCEEEEEEEecCCCCcEEEEEecCceeEEecccccccccccccceee
Q psy14505 706 FSDSGKAVRFNENSVRAMGRSARGVIGMRLEK-KQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISI 784 (1619)
Q Consensus 706 ~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~-~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~i 784 (1619)
.+.+|.+....... |.....+.. ...|.++...++ ...++..+.+|.++.-.+..-. ....+
T Consensus 216 gs~Dg~v~~wd~~~---------~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~D~~v~lwd~~~~~-------~~~~~ 278 (354)
T 2pbi_B 216 GGCDKKAMVWDMRS---------GQCVQAFETHESDVNSVRYYPS-GDAFASGSDDATCRLYDLRADR-------EVAIY 278 (354)
T ss_dssp EETTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTTE-------EEEEE
T ss_pred EeCCCeEEEEECCC---------CcEEEEecCCCCCeEEEEEeCC-CCEEEEEeCCCeEEEEECCCCc-------EEEEE
Confidence 77889888776532 212222322 233555444333 5677788888988876653211 11111
Q ss_pred eeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecC
Q psy14505 785 KTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVS 820 (1619)
Q Consensus 785 kl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~ 820 (1619)
........+..+........++..+.+|.+..++..
T Consensus 279 ~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~ 314 (354)
T 2pbi_B 279 SKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVL 314 (354)
T ss_dssp CCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred cCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECC
Confidence 111101122233333344556667777887777753
No 281
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=38.25 E-value=4.7e+02 Score=29.26 Aligned_cols=146 Identities=15% Similarity=0.139 Sum_probs=81.5
Q ss_pred CCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCC-CCeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCCCC
Q psy14505 650 PKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSN-EDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSAR 728 (1619)
Q Consensus 650 ~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke-~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~ 728 (1619)
++..+++..+.+|.++......-. ....+.. +..+..+........++..+.+|.+..+....
T Consensus 132 pdg~~l~~g~~dg~v~i~~~~~~~-------~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~--------- 195 (321)
T 3ow8_A 132 PDSQYLATGTHVGKVNIFGVESGK-------KEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIAT--------- 195 (321)
T ss_dssp TTSSEEEEECTTSEEEEEETTTCS-------EEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------
T ss_pred CCCCEEEEEcCCCcEEEEEcCCCc-------eeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCC---------
Confidence 567889999999999887764321 1222222 34454544444455666677788877665531
Q ss_pred CccceecCCC-CEEEEEEEecCCCCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEE
Q psy14505 729 GVIGMRLEKK-QKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIML 807 (1619)
Q Consensus 729 Gv~~i~L~~~-e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l 807 (1619)
|...-.+... ..|.++. ..+....++..+.+|.++.-.+.. +.....+....+.+..+.....+..++.
T Consensus 196 ~~~~~~~~~h~~~v~~l~-~spd~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~~~~sp~~~~l~s 265 (321)
T 3ow8_A 196 GKLLHTLEGHAMPIRSLT-FSPDSQLLVTASDDGYIKIYDVQH---------ANLAGTLSGHASWVLNVAFCPDDTHFVS 265 (321)
T ss_dssp TEEEEEECCCSSCCCEEE-ECTTSCEEEEECTTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred CcEEEEEcccCCceeEEE-EcCCCCEEEEEcCCCeEEEEECCC---------cceeEEEcCCCCceEEEEECCCCCEEEE
Confidence 2222223221 2233333 333245666777788887765532 2222333332344555555445556777
Q ss_pred EECCCeEEEEecCc
Q psy14505 808 ITTGGILIRTRVSE 821 (1619)
Q Consensus 808 ~T~~g~~lrf~~~e 821 (1619)
.+.+|.+..++...
T Consensus 266 ~s~D~~v~iwd~~~ 279 (321)
T 3ow8_A 266 SSSDKSVKVWDVGT 279 (321)
T ss_dssp EETTSCEEEEETTT
T ss_pred EeCCCcEEEEeCCC
Confidence 78888888887653
No 282
>3cam_A Cold-shock domain family protein; cold shock protein, chain SWAP, STRU genomics, oxford protein production facility, OPPF, gene RE; 2.60A {Neisseria meningitidis MC58}
Probab=37.20 E-value=1e+02 Score=27.00 Aligned_cols=51 Identities=20% Similarity=0.168 Sum_probs=37.5
Q ss_pred EEEEEEEe--cCceEEEEecCCeEEEEEccccccccccCcCCCCEEEEEEEEE
Q psy14505 1520 NGIIKSID--TNKGAIIQLSNEVEGYLRISEEDNKHEKKLKIGENIDVLTVLI 1570 (1619)
Q Consensus 1520 ~g~V~~i~--~~~G~~V~l~~gv~G~i~~~~~~~~~~~~~~~Gq~V~~~Vl~v 1570 (1619)
+|+|+.-. ..||.+..-.++-.-|+|.+.+.......+.+||.|.+.+..=
T Consensus 3 ~G~Vk~fn~~kGfGFI~~~~gg~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~ 55 (67)
T 3cam_A 3 TGIVKWFNDAKGFGFITPDEGGEDLFAHFSAINMEGFKTLKEGQRVSFDVTTG 55 (67)
T ss_dssp EEEEEEEETTTTEEEEEETTSCCCEEEEGGGBCGGGGSSCCTTCEEEEEEEEE
T ss_pred CEEEEEEECCCCeEEEecCCCCccEEEEHHHccccCCCCCCCCCEEEEEEEEC
Confidence 68887764 2466554443468899999999755557899999999998653
No 283
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=35.52 E-value=3.4e+02 Score=32.94 Aligned_cols=109 Identities=14% Similarity=0.155 Sum_probs=59.8
Q ss_pred eEEEEeCC----ceEEEEecccccccCCCCCCccce--ecC---CCCEEEEEEEecCCCCcEEEEEecCceeEEeccccc
Q psy14505 702 DIMLFSDS----GKAVRFNENSVRAMGRSARGVIGM--RLE---KKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYT 772 (1619)
Q Consensus 702 ~lll~T~~----G~~~~~~~~eIp~~~r~a~Gv~~i--~L~---~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~ 772 (1619)
.|++|..+ |+...+.+..-|. +...-..+.. -+. .+|--+++.+.+. .+-++++|+.|++--..+..
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~-~~~~f~kk~vdv~fppe~~~DFPvamqvs~k-ygviyviTK~G~i~lyDleT-- 289 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPT-GNQPFPKKAVDVFFPPEAQNDFPVAMQISEK-HDVVFLITKYGYIHLYDLET-- 289 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCT-TCCCCCCEEEECCCCTTSTTCCEEEEEEETT-TTEEEEEETTSEEEEEETTT--
T ss_pred eEEEEEEecCCCcEEEEEEcCCCcc-CCCCccceeeeeeCCcccccCceeEEEeccc-CCEEEEEecCceEEEEeccc--
Confidence 36666655 7777776643221 1111112222 233 3788888877665 46788999999987665431
Q ss_pred ccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 773 KHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 773 ~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
|..++.-+=..|.+.....-+...-++.++.+|+++.+.+++
T Consensus 290 -------gt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e 331 (494)
T 1bpo_A 290 -------GTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEE 331 (494)
T ss_dssp -------CCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred -------ceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence 333333221133333233334455677777777777776665
No 284
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=35.21 E-value=8e+02 Score=31.08 Aligned_cols=190 Identities=9% Similarity=0.047 Sum_probs=99.4
Q ss_pred eCccEEEEEeeCceEEEEEcccCCCCCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeC
Q psy14505 590 NTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLL 669 (1619)
Q Consensus 590 ~t~d~llifT~~Gkv~~i~v~elp~~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~ 669 (1619)
.+...|+.-+..|.+.- +++.. |..+..+- .....+..+.-. ++...+++.+.+|.++--..
T Consensus 23 p~~~~la~~~~~g~v~i---wd~~~------~~~~~~~~--~~~~~v~~~~~s-------~~~~~l~~~~~dg~i~vw~~ 84 (814)
T 3mkq_A 23 PTEPWVLTTLYSGRVEI---WNYET------QVEVRSIQ--VTETPVRAGKFI-------ARKNWIIVGSDDFRIRVFNY 84 (814)
T ss_dssp SSSSEEEEEETTSEEEE---EETTT------TEEEEEEE--CCSSCEEEEEEE-------GGGTEEEEEETTSEEEEEET
T ss_pred CCCCEEEEEeCCCEEEE---EECCC------CceEEEEe--cCCCcEEEEEEe-------CCCCEEEEEeCCCeEEEEEC
Confidence 34445555555665443 33322 33444332 123445555433 56778999999999988876
Q ss_pred CCCcCCCCCCceeeecC-CCCeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCCCCCccceec-CCCCEEEEEEEe
Q psy14505 670 SNFSNPRKSGIIAVNLS-NEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRL-EKKQKVIALLVS 747 (1619)
Q Consensus 670 ~~~~~~~r~G~~~~~lk-e~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L-~~~e~Iv~~~~~ 747 (1619)
..- .....+. -.+.+..+........++..+.+|.+..+.... + +.....+ .....|..+...
T Consensus 85 ~~~-------~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~----~----~~~~~~~~~~~~~v~~~~~~ 149 (814)
T 3mkq_A 85 NTG-------EKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWEN----N----WALEQTFEGHEHFVMCVAFN 149 (814)
T ss_dssp TTC-------CEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGG----T----SEEEEEEECCSSCEEEEEEE
T ss_pred CCC-------cEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCC----C----ceEEEEEcCCCCcEEEEEEE
Confidence 432 1222232 234566655555556677778888877776531 0 1111112 123345555444
Q ss_pred cCCCCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEec--CCcEEEEEECCCeEEEEecC
Q psy14505 748 NNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVN--RYHEIMLITTGGILIRTRVS 820 (1619)
Q Consensus 748 ~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~--~~~~i~l~T~~g~~lrf~~~ 820 (1619)
+.....++..+.+|.++.-.+..-. ....+.... ...+..+.... ++..++..+.+|.+..++..
T Consensus 150 p~~~~~l~~~~~dg~v~vwd~~~~~-------~~~~~~~~~-~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~ 216 (814)
T 3mkq_A 150 PKDPSTFASGCLDRTVKVWSLGQST-------PNFTLTTGQ-ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ 216 (814)
T ss_dssp TTEEEEEEEEETTSEEEEEETTCSS-------CSEEEECCC-TTCCCEEEECCSTTCCEEEEECTTSEEEEEETT
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCc-------ceeEEecCC-CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECC
Confidence 4224567777888888776553211 112222111 12333333332 44567777788888777754
No 285
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=35.15 E-value=1.7e+02 Score=32.59 Aligned_cols=60 Identities=12% Similarity=0.074 Sum_probs=32.7
Q ss_pred CCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 751 KQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 751 ~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
+..+.+.|.+|.+.+...+ |.......- .+..+.....+.+..+++.|.+|.+...+...
T Consensus 265 ~g~l~v~t~~ggl~~~d~~----------g~~~~~~~~-~~~~~~~~~~d~~g~l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 265 TDTIYFGSYDGHLYAINPD----------GTEKWNFET-GSWIIATPVIDENGTIYFGTRNGKFYALFNLE 324 (330)
T ss_dssp TSCEEEECTTCEEEEECTT----------SCEEEEEEC-SSCCCSCCEECTTCCEEEECTTSCEEEEEC--
T ss_pred CCeEEEecCCCCEEEECCC----------CcEEEEEEc-CCccccceEEcCCCEEEEEcCCCeEEEEeccc
Confidence 4567778877665554321 111111111 12233333455677899999999888777654
No 286
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=35.04 E-value=6e+02 Score=29.56 Aligned_cols=233 Identities=9% Similarity=0.014 Sum_probs=0.0
Q ss_pred CcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCccCC
Q psy14505 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSR 620 (1619)
Q Consensus 541 ~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~~~ 620 (1619)
+...+++.+.+|.|+--+..+ |.....+......+..+..+ .+.++.-+.+|.++......
T Consensus 182 ~~~~l~sg~~dg~i~vwd~~~---------~~~~~~~~~h~~~v~~l~~~-~~~l~s~s~dg~i~vwd~~~--------- 242 (435)
T 1p22_A 182 DERVIITGSSDSTVRVWDVNT---------GEMLNTLIHHCEAVLHLRFN-NGMMVTCSKDRSIAVWDMAS--------- 242 (435)
T ss_dssp CSSEEEEEETTSCEEEEESSS---------CCEEEEECCCCSCEEEEECC-TTEEEEEETTSCEEEEECSS---------
T ss_pred CCCEEEEEcCCCeEEEEECCC---------CcEEEEEcCCCCcEEEEEEc-CCEEEEeeCCCcEEEEeCCC---------
Q ss_pred CccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEecCC
Q psy14505 621 GKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGS 700 (1619)
Q Consensus 621 G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~~~~ 700 (1619)
+..+.....+......+..+.. +..+++..+.+|.++--+........ .--...+.+..+.. ..
T Consensus 243 ~~~~~~~~~~~~~~~~v~~~~~--------~~~~l~s~~~dg~i~vwd~~~~~~~~------~~~~~~~~v~~~~~--~~ 306 (435)
T 1p22_A 243 PTDITLRRVLVGHRAAVNVVDF--------DDKYIVSASGDRTIKVWNTSTCEFVR------TLNGHKRGIACLQY--RD 306 (435)
T ss_dssp SSCCEEEEEECCCSSCEEEEEE--------ETTEEEEEETTSEEEEEETTTCCEEE------EEECCSSCEEEEEE--ET
T ss_pred CCCceeeeEecCCCCcEEEEEe--------CCCEEEEEeCCCeEEEEECCcCcEEE------EEcCCCCcEEEEEe--CC
Q ss_pred CeEEEEeCCceEEEEecccccccCCCCCCccceecCCCCEEEEEEEecCCCCcEEEEEecCceeEEeccccccccccccc
Q psy14505 701 YDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKG 780 (1619)
Q Consensus 701 d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG 780 (1619)
..++..+.+|.+..+.... |.....+......+..+..++ ..++..+.+|.++.-.+............
T Consensus 307 ~~l~~g~~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~~~~~~--~~l~sg~~dg~i~vwd~~~~~~~~~~~~~ 375 (435)
T 1p22_A 307 RLVVSGSSDNTIRLWDIEC---------GACLRVLEGHEELVRCIRFDN--KRIVSGAYDGKIKVWDLVAALDPRAPAGT 375 (435)
T ss_dssp TEEEEEETTSCEEEEETTT---------CCEEEEECCCSSCEEEEECCS--SEEEEEETTSCEEEEEHHHHTSTTSCTTT
T ss_pred CEEEEEeCCCeEEEEECCC---------CCEEEEEeCCcCcEEEEEecC--CEEEEEeCCCcEEEEECCCCCCccccccc
Q ss_pred ceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecCc
Q psy14505 781 IISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 781 ~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~e 821 (1619)
.....+....+.+.++.. ++..++..+.+|.+..++...
T Consensus 376 ~~~~~~~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~ 414 (435)
T 1p22_A 376 LCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLN 414 (435)
T ss_dssp TEEEEECCCSSCCCCEEE--CSSCEEECCSSSEEEEEC---
T ss_pred hheeeccCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCC
No 287
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=33.81 E-value=1.3e+02 Score=26.78 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=35.1
Q ss_pred EEEEEEEEe--cCceEEEEecCCeEEEEEccccccccccCcCCCCEEEEEEEE
Q psy14505 1519 VNGIIKSID--TNKGAIIQLSNEVEGYLRISEEDNKHEKKLKIGENIDVLTVL 1569 (1619)
Q Consensus 1519 v~g~V~~i~--~~~G~~V~l~~gv~G~i~~~~~~~~~~~~~~~Gq~V~~~Vl~ 1569 (1619)
.+|+|+.-. ..||.+..-.++-. |+|.+.+.... .+.+||.|.+.+..
T Consensus 3 ~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g--~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 3 MNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD--LIKKDAAVTFEPTT 52 (74)
T ss_dssp EEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG--GCCTTCEEEEEEEE
T ss_pred cceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC--CCCCCCEEEEEEEe
Confidence 578888764 35665544444456 99999986544 89999999999874
No 288
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=33.29 E-value=5.5e+02 Score=28.63 Aligned_cols=228 Identities=11% Similarity=0.050 Sum_probs=114.0
Q ss_pred ccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCcc
Q psy14505 539 IASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRN 618 (1619)
Q Consensus 539 i~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~ 618 (1619)
-++.+.+++.+.+|.|+--++..-+... ...... ..+..+........|+.-+..|.+... ++...
T Consensus 89 ~~~~~~l~s~s~D~~i~lWd~~~~~~~~-------~~~~~~-~~~~~~~~spdg~~l~~g~~dg~v~i~---~~~~~--- 154 (321)
T 3ow8_A 89 SHTLPIAASSSLDAHIRLWDLENGKQIK-------SIDAGP-VDAWTLAFSPDSQYLATGTHVGKVNIF---GVESG--- 154 (321)
T ss_dssp CSSSSEEEEEETTSEEEEEETTTTEEEE-------EEECCT-TCCCCEEECTTSSEEEEECTTSEEEEE---ETTTC---
T ss_pred CCCCCEEEEEeCCCcEEEEECCCCCEEE-------EEeCCC-ccEEEEEECCCCCEEEEEcCCCcEEEE---EcCCC---
Confidence 3455667777788888876554321110 000000 111112222334455555556665443 33322
Q ss_pred CCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCC-CCeEEEEEEe
Q psy14505 619 SRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSN-EDFLIGAALT 697 (1619)
Q Consensus 619 ~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke-~D~l~~~~~~ 697 (1619)
.+...+- ..+..+..+... ++..+++..+.+|.++--++.. |.....++. ...+..+...
T Consensus 155 ---~~~~~~~--~~~~~v~~~~~s-------pdg~~lasg~~dg~i~iwd~~~-------~~~~~~~~~h~~~v~~l~~s 215 (321)
T 3ow8_A 155 ---KKEYSLD--TRGKFILSIAYS-------PDGKYLASGAIDGIINIFDIAT-------GKLLHTLEGHAMPIRSLTFS 215 (321)
T ss_dssp ---SEEEEEE--CSSSCEEEEEEC-------TTSSEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCCCEEEEC
T ss_pred ---ceeEEec--CCCceEEEEEEC-------CCCCEEEEEcCCCeEEEEECCC-------CcEEEEEcccCCceeEEEEc
Confidence 2222221 123445554333 6778899999999999877643 222223332 2233333333
Q ss_pred cCCCeEEEEeCCceEEEEecccccccCCCCCCccceecCC-CCEEEEEEEecCCCCcEEEEEecCceeEEeccccccccc
Q psy14505 698 DGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEK-KQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNR 776 (1619)
Q Consensus 698 ~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~-~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R 776 (1619)
.....|+..+.+|.+..+.... |...-.+.. ...|..+...++ ...++..+.+|.++.-.+..
T Consensus 216 pd~~~l~s~s~dg~i~iwd~~~---------~~~~~~~~~h~~~v~~~~~sp~-~~~l~s~s~D~~v~iwd~~~------ 279 (321)
T 3ow8_A 216 PDSQLLVTASDDGYIKIYDVQH---------ANLAGTLSGHASWVLNVAFCPD-DTHFVSSSSDKSVKVWDVGT------ 279 (321)
T ss_dssp TTSCEEEEECTTSCEEEEETTT---------CCEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTT------
T ss_pred CCCCEEEEEcCCCeEEEEECCC---------cceeEEEcCCCCceEEEEECCC-CCEEEEEeCCCcEEEEeCCC------
Confidence 3344555566777766665432 111122222 234555444333 56777888888887765532
Q ss_pred ccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEe
Q psy14505 777 GTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTR 818 (1619)
Q Consensus 777 ~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~ 818 (1619)
|.....+....+.+.++....++..++-.+.+|.+..++
T Consensus 280 ---~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd 318 (321)
T 3ow8_A 280 ---RTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYD 318 (321)
T ss_dssp ---TEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEEE
T ss_pred ---CEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEEe
Confidence 223333433345566655544455677777777766554
No 289
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=32.50 E-value=6.3e+02 Score=29.11 Aligned_cols=212 Identities=13% Similarity=0.065 Sum_probs=109.5
Q ss_pred CCcccccc-CcceEEEEccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEccc
Q psy14505 533 PSTEDLIA-SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQ 611 (1619)
Q Consensus 533 ~~~~~li~-~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~e 611 (1619)
+..-..-+ +...+++.+.+|.|+--+........ .-.....+.-...+..+....+.+.|+.-+.+|.+....+..
T Consensus 66 V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~ 142 (437)
T 3gre_A 66 ITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGE---VYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNH 142 (437)
T ss_dssp EEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTC---CCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEE
T ss_pred eEEEEECCCCCCEEEEecCCceEEEeECcccccCc---ccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEecc
Confidence 33334556 67788999999999876654421110 000011112234455555555666777777778766554421
Q ss_pred CCCC--CccCCCccceecccCC---CCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecC
Q psy14505 612 IPQG--SRNSRGKPIINMFSLK---NKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLS 686 (1619)
Q Consensus 612 lp~~--~~~~~G~~i~~ll~l~---~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lk 686 (1619)
-..+ .+...+.++..+ .+. .++.++.+... .-++..+++..+.+|.++--++.... ....+.
T Consensus 143 ~~~~~~~~~~~~~~i~~~-~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~d~~i~iwd~~~~~-------~~~~~~ 209 (437)
T 3gre_A 143 YQQESEVKFLNCECIRKI-NLKNFGKNEYAVRMRAF-----VNEEKSLLVALTNLSRVIIFDIRTLE-------RLQIIE 209 (437)
T ss_dssp EEETTEEEEEEEEEEEEE-EGGGGSSCCCEEEEEEE-----ECSSCEEEEEEETTSEEEEEETTTCC-------EEEEEE
T ss_pred ccCCceeeccccceeEEE-EccCcccccCceEEEEE-----EcCCCCEEEEEeCCCeEEEEeCCCCe-------eeEEEc
Confidence 0111 011122222222 122 34455555422 11467789999999999988875422 222232
Q ss_pred C---CCeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCCCCCccc--eecCCCCEEEEEEEecCC---CCcEEEEE
Q psy14505 687 N---EDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIG--MRLEKKQKVIALLVSNNQ---KQSVLTAT 758 (1619)
Q Consensus 687 e---~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~--i~L~~~e~Iv~~~~~~~~---~~~ll~~T 758 (1619)
. .+.+..+........++..+.+|.+..+.... |... +.+.....|..+...+.+ ...++..+
T Consensus 210 ~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~ 280 (437)
T 3gre_A 210 NSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRF---------NVLIRSWSFGDHAPITHVEVCQFYGKNSVIVVGGS 280 (437)
T ss_dssp CCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTT---------TEEEEEEBCTTCEEEEEEEECTTTCTTEEEEEEES
T ss_pred cCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCC---------ccEEEEEecCCCCceEEEEeccccCCCccEEEEEc
Confidence 2 34565555555556677788888877776532 2222 223333445555433221 22444555
Q ss_pred ecCceeEEecc
Q psy14505 759 ENGYGKRTLIK 769 (1619)
Q Consensus 759 ~~G~~Kr~~l~ 769 (1619)
.+|.++.-.+.
T Consensus 281 ~dg~i~iwd~~ 291 (437)
T 3gre_A 281 SKTFLTIWNFV 291 (437)
T ss_dssp TTEEEEEEETT
T ss_pred CCCcEEEEEcC
Confidence 56766665543
No 290
>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1
Probab=31.77 E-value=7.7e+02 Score=29.88 Aligned_cols=112 Identities=17% Similarity=0.225 Sum_probs=64.9
Q ss_pred EEEEEeeC----ceEEEEEcccCCCCCccCCCccceecccCCC---CceEEEEEecCCCCCCCCCCcEEEEEeCCceEEE
Q psy14505 594 YILCFSNY----GRLYWLKVWQIPQGSRNSRGKPIINMFSLKN---KEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKK 666 (1619)
Q Consensus 594 ~llifT~~----Gkv~~i~v~elp~~~~~~~G~~i~~ll~l~~---~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr 666 (1619)
.|++|..+ ||++-+.+..-|.+.. .....-.. +.+.+ ++=-+++... +...++.++|+.||+--
T Consensus 214 ~lf~fa~r~~~g~kLhi~Ei~~~~~~~~-~f~kk~vd-v~fppe~~~DFPvamqvs-------~kygviyviTK~G~i~l 284 (494)
T 1bpo_A 214 TLFCFAVRGQAGGKLHIIEVGTPPTGNQ-PFPKKAVD-VFFPPEAQNDFPVAMQIS-------EKHDVVFLITKYGYIHL 284 (494)
T ss_dssp EEEEEEECSTTCCEEEEEECSCCCTTCC-CCCCEEEE-CCCCTTSTTCCEEEEEEE-------TTTTEEEEEETTSEEEE
T ss_pred eEEEEEEecCCCcEEEEEEcCCCccCCC-Cccceeee-eeCCcccccCceeEEEec-------ccCCEEEEEecCceEEE
Confidence 46667666 7888777644332211 11111111 11222 3333344332 46789999999999999
Q ss_pred eeCCCCcCCCCCCceeeecCCCCeEEEEEEecCCCeEEEEeCCceEEEEecccc
Q psy14505 667 TLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSV 720 (1619)
Q Consensus 667 ~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eI 720 (1619)
.+++.-.. ..+.-=..|.+.....-+...-++.++.+|+++.+.+++-
T Consensus 285 yDleTgt~------i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~ 332 (494)
T 1bpo_A 285 YDLETGTC------IYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (494)
T ss_dssp EETTTCCE------EEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTT
T ss_pred Eeccccee------eeeecccCCceEEecccCCCCcEEEEccCceEEEEEEccc
Confidence 88864211 1122123455544444456678999999999999988763
No 291
>2k5n_A Putative cold-shock protein; GFT protein structure, PSI, nesgc, OB fold, cold shock structural genomics; NMR {Pectobacterium atrosepticum}
Probab=31.49 E-value=1.5e+02 Score=26.50 Aligned_cols=49 Identities=8% Similarity=0.098 Sum_probs=35.6
Q ss_pred CeEEEEEEEEec--c-EEEEEeCCCeEEEEecccccccCCCccccCCCEEEEEEEE
Q psy14505 1087 EVISAEVIGLDR--N-FVIINADLKSEAFIPIEEFKNDNGELEVKIGDFVSVAIES 1139 (1619)
Q Consensus 1087 ~iv~G~V~~v~~--~-gv~V~lg~~~~Gfi~~~e~~~~~~~~~~kvG~~v~~~V~~ 1139 (1619)
|...|+|...++ . |.+-.-+++-. |++.+.+.... .+++||.|.+.+..
T Consensus 1 M~~~G~Vkwfn~~KGfGFI~~~dg~~d-FvH~s~i~~~g---~l~~G~~V~F~~~~ 52 (74)
T 2k5n_A 1 MAMNGTITTWFKDKGFGFIKDENGDNR-YFHVIKVANPD---LIKKDAAVTFEPTT 52 (74)
T ss_dssp CCEEEEEEEEETTTTEEEEEESSSCEE-EEEGGGBSSGG---GCCTTCEEEEEEEE
T ss_pred CCcceEEEEEECCCCeEEEecCCCCce-EEEHhHcccCC---CCCCCCEEEEEEEe
Confidence 457899999874 2 34433344566 99999997543 68999999998864
No 292
>1wfq_A UNR protein; beta-barrel, translational regulation, RNA chaperone, RNA/DN binding, QB fold, greek-KEY topology, structur genomics; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=31.45 E-value=1.9e+02 Score=26.74 Aligned_cols=56 Identities=14% Similarity=0.237 Sum_probs=43.2
Q ss_pred cCCCCCeEEEEEEEEeccEEEEEeCC-CeEEEEecccccccCCCccccCCCEEEEEEEE
Q psy14505 1082 DMRSGEVISAEVIGLDRNFVIINADL-KSEAFIPIEEFKNDNGELEVKIGDFVSVAIES 1139 (1619)
Q Consensus 1082 ~l~~G~iv~G~V~~v~~~gv~V~lg~-~~~Gfi~~~e~~~~~~~~~~kvG~~v~~~V~~ 1139 (1619)
.....+...|+|...++.+=++.-.. .-+-|+|.+.+... ...+++||.|.+.+..
T Consensus 12 ~~s~~~~~~G~Vkwf~KGfGFI~~ddgg~DVFvH~s~i~~~--~~~L~~G~~V~F~v~~ 68 (89)
T 1wfq_A 12 GTSAALRETGVIEKLLTSYGFIQCSERQARLFFHCSQYNGN--LQDLKVGDDVEFEVSS 68 (89)
T ss_dssp SSSCCCEEEEEEEEECSSEEEEEETTTTEEEEEETTTCSSC--TTTCCTTCCEEEEEEE
T ss_pred CCCcccccceEEEEEeCCeeEEecCCCCccEEEEhHHhhCc--cCCCCCCCEEEEEEEE
Confidence 45566889999999986555555554 47899999999754 2468999999998865
No 293
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=31.27 E-value=6.1e+02 Score=28.58 Aligned_cols=148 Identities=16% Similarity=0.130 Sum_probs=81.9
Q ss_pred CcceEEEEccCccEEeccCchhhhcccCCCCccccc-cC-CCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCcc
Q psy14505 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMM-TK-DEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRN 618 (1619)
Q Consensus 541 ~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~-~k-~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~ 618 (1619)
+...+++.+.+|.|+--++..-. ..... .. ....+..+....+...|+.-+.+|.++... +.
T Consensus 130 ~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d---~~----- 193 (383)
T 3ei3_B 130 NTNQLFVSSIRGATTLRDFSGSV--------IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLG---LD----- 193 (383)
T ss_dssp EEEEEEEEETTTEEEEEETTSCE--------EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEE---TT-----
T ss_pred CCCEEEEEeCCCEEEEEECCCCc--------eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEE---CC-----
Confidence 34666777778887765554200 00000 01 113344444445556666667777666554 31
Q ss_pred CCCccceecccCCCCceEEEEEecCCCCCCCCCCc-EEEEEeCCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEe
Q psy14505 619 SRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNN-YVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALT 697 (1619)
Q Consensus 619 ~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~-~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~ 697 (1619)
|.++..+. .....+..+.-. ++.+ +++..+.+|.++--++...... +.....+.-.+.+..+...
T Consensus 194 --~~~~~~~~--~h~~~v~~~~~~-------~~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~v~~~~~s 259 (383)
T 3ei3_B 194 --GHEIFKEK--LHKAKVTHAEFN-------PRCDWLMATSSVDATVKLWDLRNIKDK---NSYIAEMPHEKPVNAAYFN 259 (383)
T ss_dssp --SCEEEEEE--CSSSCEEEEEEC-------SSCTTEEEEEETTSEEEEEEGGGCCST---TCEEEEEECSSCEEEEEEC
T ss_pred --CCEEEEec--cCCCcEEEEEEC-------CCCCCEEEEEeCCCEEEEEeCCCCCcc---cceEEEecCCCceEEEEEc
Confidence 33444443 123445555433 4555 8999999999998887653221 2222223344566666655
Q ss_pred c-CCCeEEEEeCCceEEEEecc
Q psy14505 698 D-GSYDIMLFSDSGKAVRFNEN 718 (1619)
Q Consensus 698 ~-~~d~lll~T~~G~~~~~~~~ 718 (1619)
. ....++..+.+|.+..+...
T Consensus 260 ~~~~~~l~~~~~d~~i~iwd~~ 281 (383)
T 3ei3_B 260 PTDSTKLLTTDQRNEIRVYSSY 281 (383)
T ss_dssp TTTSCEEEEEESSSEEEEEETT
T ss_pred CCCCCEEEEEcCCCcEEEEECC
Confidence 5 55667777778888877764
No 294
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=29.97 E-value=32 Score=40.50 Aligned_cols=42 Identities=17% Similarity=0.218 Sum_probs=33.4
Q ss_pred eEEEEEcCHHHHHHhchHHHHhcCCCCCHHHHHHHHHhhhhh
Q psy14505 993 LKIFLTADIKQRTKRRYKQLMQKGFSVSMSDLLINLIKRDIR 1034 (1619)
Q Consensus 993 ~kifl~A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~ 1034 (1619)
++||++|+.++|.+|+.++-...|..-+.+++.+.+...|..
T Consensus 291 ~~i~Vdad~ev~~~Rli~R~~~~Gl~~s~eea~~r~~~~d~p 332 (359)
T 2ga8_A 291 LVYKIDIDYEATEERVAKRHLQSGLVTTIAEGREKFRSNDLL 332 (359)
T ss_dssp EEEEEECCHHHHHHHHHHHHHHTTSCSSHHHHHHHHHHCTTT
T ss_pred EEEEEECCHHHHHHHHHHhhhccCCCCCHHHHHHHHHhcCch
Confidence 899999999999999887755544433899999988875554
No 295
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=29.71 E-value=1.7e+02 Score=26.36 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=39.2
Q ss_pred CeEEEEEEEEec--CceEEEEecCCeEEEEEccccccc----cccCcCCCCEEEEEEEE
Q psy14505 1517 SLVNGIIKSIDT--NKGAIIQLSNEVEGYLRISEEDNK----HEKKLKIGENIDVLTVL 1569 (1619)
Q Consensus 1517 ~~v~g~V~~i~~--~~G~~V~l~~gv~G~i~~~~~~~~----~~~~~~~Gq~V~~~Vl~ 1569 (1619)
...+|+|+.-.. .||.+..-.++-.-|+|.+.+... ....+.+||.|.+.+..
T Consensus 7 ~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred cccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 456799988752 466665444478999999998654 23678999999999864
No 296
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=29.50 E-value=37 Score=41.09 Aligned_cols=29 Identities=21% Similarity=0.418 Sum_probs=25.4
Q ss_pred EEecCCcCCCCchhHHHHHHHhCCEEech
Q psy14505 862 ITIDGPTASGKGTVAQLVASKLGFHYLDS 890 (1619)
Q Consensus 862 Iti~g~~gsGK~~~~~~la~~l~~~~~dt 890 (1619)
+-.-|++|+||+..++.+|..+|.+|+.-
T Consensus 209 iLL~GPPGtGKT~lakAiA~~~~~~~~~v 237 (428)
T 4b4t_K 209 VLLYGPPGTGKTMLVKAVANSTKAAFIRV 237 (428)
T ss_dssp EEEESCTTTTHHHHHHHHHHHHTCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 44458999999999999999999999874
No 297
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=28.75 E-value=2.1e+02 Score=24.76 Aligned_cols=51 Identities=16% Similarity=0.233 Sum_probs=37.1
Q ss_pred EEEEEEEEec--CceEEEEecCCeEEEEEccccccccccCcCCCCEEEEEEEEE
Q psy14505 1519 VNGIIKSIDT--NKGAIIQLSNEVEGYLRISEEDNKHEKKLKIGENIDVLTVLI 1570 (1619)
Q Consensus 1519 v~g~V~~i~~--~~G~~V~l~~gv~G~i~~~~~~~~~~~~~~~Gq~V~~~Vl~v 1570 (1619)
.+|+|+.-.. .||.+ .-++|-.-|+|.+.+.......+.+||.|.+.+..-
T Consensus 2 ~~G~Vk~fn~~kGfGFI-~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~ 54 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFI-EVEGGSDVFVHFTAIQGEGFKTLEEGQEVSFEIVQG 54 (66)
T ss_dssp EEEEEEEEETTTTEEEE-EETTEEEEEEEGGGBCSSSCCCCCTTCEEEEEEEEE
T ss_pred CceEEEEEECCCCeEEE-ecCCCccEEEEHHHccccCCCCCCCCCEEEEEEEEC
Confidence 3688887753 35544 445567789999998765456799999999988643
No 298
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=28.67 E-value=1.5e+02 Score=27.98 Aligned_cols=50 Identities=28% Similarity=0.259 Sum_probs=37.3
Q ss_pred ceeEEEEEEEEcCCeE-EEEEcC-CEEEEEeccccCccccCCCccccccCCCEEEEEEE
Q psy14505 1342 GTRLLGKVTNLTDYGA-FVEIEK-GIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMIL 1398 (1619)
Q Consensus 1342 G~iv~g~V~~v~~~G~-fV~l~~-gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl 1398 (1619)
.....|+|+.. ..|. |+.-.+ +-+-|+|.+.+.. . ...+.+||.|...+.
T Consensus 16 ~~~~~G~Vkwf-~KGfGFI~~ddg~~DvFvH~s~i~~-----~-~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAM-KEAFGFIERGDVVKEIFFHYSEFKG-----D-LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCC-CSSEEEEECSSSCCCEEEETTTCCS-----C-TTSCCSCCEEEEEEC
T ss_pred CcceeEEEEEE-eCCceEEecCCCCceEEEEehHhcc-----c-cCCCCCCCEEEEEEE
Confidence 56678999888 5554 566554 4899999999942 1 356789999999984
No 299
>1c9o_A CSPB, cold-shock protein; beta barrel, homodimer, transcription; 1.17A {Bacillus caldolyticus} SCOP: b.40.4.5 PDB: 2hax_A 1hz9_A 1hzb_A 1i5f_A 1hza_A 1hzc_A 3pf4_A 1csq_A 1nmf_A 1nmg_A 1csp_A 2f52_A 2es2_A 3pf5_A 2i5m_X 2i5l_X
Probab=28.45 E-value=2.9e+02 Score=23.86 Aligned_cols=50 Identities=26% Similarity=0.400 Sum_probs=35.7
Q ss_pred EEEEEEEEcC-CeE-EEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEE
Q psy14505 1345 LLGKVTNLTD-YGA-FVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILE 1399 (1619)
Q Consensus 1345 v~g~V~~v~~-~G~-fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~ 1399 (1619)
..|+|+...+ .|. |+.-.++-+-|+|.+.+.. .....+.+||.|...+..
T Consensus 2 ~~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i~~-----~g~~~l~~G~~V~f~~~~ 53 (66)
T 1c9o_A 2 QRGKVKWFNNEKGYGFIEVEGGSDVFVHFTAIQG-----EGFKTLEEGQEVSFEIVQ 53 (66)
T ss_dssp EEEEEEEEETTTTEEEEEETTEEEEEEEGGGBCS-----SSCCCCCTTCEEEEEEEE
T ss_pred CceEEEEEECCCCeEEEecCCCccEEEEHHHccc-----cCCCCCCCCCEEEEEEEE
Confidence 3688988864 343 5666667899999999943 113457799999998754
No 300
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=28.15 E-value=6.4e+02 Score=27.78 Aligned_cols=245 Identities=7% Similarity=-0.024 Sum_probs=119.5
Q ss_pred cceEEEEccCccEEeccCchhhhcccCCCCccccccC-CCCeEEEEEEee-CccEEEEEeeCceEEEEEcccCCCCCccC
Q psy14505 542 QDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTK-DEDWINQLFIAN-THDYILCFSNYGRLYWLKVWQIPQGSRNS 619 (1619)
Q Consensus 542 e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k-~~D~~~~~~~~~-t~d~llifT~~Gkv~~i~v~elp~~~~~~ 619 (1619)
...+++.+.+|.|+--+..+.+. ...+. -.+.+..+.... +...|+.-+.+|.++-. ++..
T Consensus 85 ~~~l~~~~~dg~i~v~d~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iw---d~~~----- 147 (366)
T 3k26_A 85 HPLLAVAGSRGIIRIINPITMQC---------IKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLW---NIQT----- 147 (366)
T ss_dssp CEEEEEEETTCEEEEECTTTCCE---------EEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEE---ETTT-----
T ss_pred CCEEEEecCCCEEEEEEchhceE---------eeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEE---Eeec-----
Confidence 45788888999988876553211 11122 233344444443 45566666677876654 4432
Q ss_pred CCccceecccC-CCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCC---------CC------ce--
Q psy14505 620 RGKPIINMFSL-KNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRK---------SG------II-- 681 (1619)
Q Consensus 620 ~G~~i~~ll~l-~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r---------~G------~~-- 681 (1619)
|..+..+-.+ .....+..+... ++..+++..+.+|.++.-++........ .+ ..
T Consensus 148 -~~~~~~~~~~~~~~~~v~~~~~~-------~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (366)
T 3k26_A 148 -DTLVAIFGGVEGHRDEVLSADYD-------LLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKI 219 (366)
T ss_dssp -TEEEEEECSTTSCSSCEEEEEEC-------TTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEE
T ss_pred -CeEEEEecccccccCceeEEEEC-------CCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceee
Confidence 3344433211 234456655443 5677899999999999888764321100 00 00
Q ss_pred ---ee-ecC-CCCeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCCCC----Ccc-ceecCC-CCEEEEEEEecCC
Q psy14505 682 ---AV-NLS-NEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSAR----GVI-GMRLEK-KQKVIALLVSNNQ 750 (1619)
Q Consensus 682 ---~~-~lk-e~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~----Gv~-~i~L~~-~e~Iv~~~~~~~~ 750 (1619)
.. .+. ..+.+..+... .+.++..+..|.+..+........-.... ... ...+.. ...|..+ ...+.
T Consensus 220 ~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~s~~ 296 (366)
T 3k26_A 220 HFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYM-RFSMD 296 (366)
T ss_dssp CCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCC-CCEEC
T ss_pred ccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEE-EEcCC
Confidence 00 000 22333333333 45677777888877777543221100000 000 001110 0111111 11121
Q ss_pred --CCcEEEEEecCceeEEecccccccccccccceeeeeccC--CCeEEEEEEecCCcEEEEEECCCeEEEEec
Q psy14505 751 --KQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKR--NGKVVAATLVNRYHEIMLITTGGILIRTRV 819 (1619)
Q Consensus 751 --~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~--~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~ 819 (1619)
...++..+.+|.++.-.+..-... ......+... ...+..+........++..+.+|.+..++.
T Consensus 297 ~~~~~l~~~~~dg~i~vwd~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~ 364 (366)
T 3k26_A 297 FWQKMLALGNQVGKLYVWDLEVEDPH-----KAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDR 364 (366)
T ss_dssp TTSSEEEEECTTSCEEEEECCSSSGG-----GCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC
T ss_pred CCCcEEEEEecCCcEEEEECCCCCCc-----cccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEe
Confidence 345666777888877766443211 1122233332 245555555555566777788888776654
No 301
>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=27.28 E-value=1.6e+02 Score=29.74 Aligned_cols=69 Identities=13% Similarity=0.211 Sum_probs=0.0
Q ss_pred cccceeEEEEEEEEcCCe-EEEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEEEEeecccceEEEeeec
Q psy14505 1339 YPRGTRLLGKVTNLTDYG-AFVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILEINEERRRISLGMKQ 1413 (1619)
Q Consensus 1339 l~~G~iv~g~V~~v~~~G-~fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~id~e~~ri~LSlK~ 1413 (1619)
++.-..+.|+|+...+.+ +-|++.+|..-++|++ .+... .-.+.+|+.|.|-....+..+++|..-+++
T Consensus 27 ~p~ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~-----GKmRk-~IwI~~GD~VlVe~~~yd~~KG~Ii~r~~~ 96 (143)
T 1d7q_A 27 FKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIR-----GKLRK-KVWINTSDIILVGLRDYQDNKADVILKYNA 96 (143)
T ss_dssp CCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECC-----SGGGG-SCCCCTTCEEEEECSSSSSSCCEEEEEECT
T ss_pred CCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEec-----cccee-eEEecCCCEEEEeeccCCCCeEEEEEEeCH
No 302
>1h95_A CSD, Y-box binding protein; translation factor, transcription factor, OB-fold, 5- stranded anti-parallel beta-barrel, single stranded DNA binding; NMR {Homo sapiens} SCOP: b.40.4.5
Probab=27.06 E-value=2.1e+02 Score=25.81 Aligned_cols=55 Identities=20% Similarity=0.198 Sum_probs=38.0
Q ss_pred cEEEEEEEEEec---CeEEEEeC-CEEEEeeccccCccccCCCccccccCCEEEEEEEE
Q psy14505 1258 CTVKGVVKNITD---YGAFIDLG-GIDGLLHITDIAWRRVKHPSEILTIGQDISTKILK 1312 (1619)
Q Consensus 1258 ~iv~g~V~~v~~---~G~~V~l~-gi~g~l~~sels~~~~~~~~~~~~vG~~v~vrVl~ 1312 (1619)
...+|+|+.... +|.+..-+ +-+-|+|++.+.......-...+..||.|.+.+..
T Consensus 7 ~~~~G~Vkwfn~~kGfGFI~~~~gg~DvFvH~s~i~~~~~~~g~~~l~~G~~V~f~~~~ 65 (79)
T 1h95_A 7 TKVLGTVKWFNVRNGYGFINRNDTKEDVFVHQTAIKKNNPRKYLRSVGDGETVEFDVVE 65 (79)
T ss_dssp EEEEEEEEEEETTTTEEEEEEGGGTEEEEEEGGGBCSCCCSCCSCSCCSSCEEEEEEEE
T ss_pred cccceEEEEEECCCCcEEEecCCCCccEEEEhHHccccccccccccCCCCCEEEEEEEE
Confidence 456899999964 46655544 69999999999753111112346799999998754
No 303
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=26.62 E-value=7.1e+02 Score=27.79 Aligned_cols=291 Identities=9% Similarity=0.035 Sum_probs=140.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCC---CCCCCccccccccCCCCccccccCcceEEE
Q psy14505 471 EQKKIINKYENVIKKVIDLTDILSNSKRIIEIITDELNIIKNKYGSH---KKNIRRSEIILNAINPSTEDLIASQDMVIT 547 (1619)
Q Consensus 471 e~~~l~~e~~~l~~~i~~l~~iL~~~~~~~~~i~~el~~ik~~f~~~---~~~~RrT~I~~~~~~~~~~~li~~e~~~v~ 547 (1619)
|.+.|+.|...|.+++...++.+++.. +..+...+... ....|+| +..-...+..-..-++...+++
T Consensus 3 e~~~l~~~~~~l~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~-l~gH~~~v~~~~~s~d~~~l~s 72 (340)
T 1got_B 3 ELDQLRQEAEQLKNQIRDARKACADAT---------LSQITNNIDPVGRIQMRTRRT-LRGHLAKIYAMHWGTDSRLLLS 72 (340)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCCCC---------HHHHTTTSCCCCCCCCCEEEE-ECCCSSCEEEEEECTTSSEEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHhhcccch---------hHHhhcCCCccccccchhhee-ecCCCCceEEEEECCCCCEEEE
Confidence 556778888888888887777666421 12221222110 0001111 1111223333344567778888
Q ss_pred EccCccEEeccCchhhhcccCCCCccccccCCCCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCccCCCccceec
Q psy14505 548 LSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDEDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINM 627 (1619)
Q Consensus 548 ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~~~G~~i~~l 627 (1619)
.+.+|.|+--+....... ..... ....+..+....+...|+.-+.+|.+.. +++..... .......+
T Consensus 73 ~s~Dg~v~iWd~~~~~~~-------~~~~~-~~~~v~~~~~s~~~~~l~s~~~d~~v~i---w~~~~~~~--~~~~~~~~ 139 (340)
T 1got_B 73 ASQDGKLIIWDSYTTNKV-------HAIPL-RSSWVMTCAYAPSGNYVACGGLDNICSI---YNLKTREG--NVRVSREL 139 (340)
T ss_dssp EETTTEEEEEETTTCCEE-------EEEEC-SSSCEEEEEECTTSSEEEEEETTCEEEE---EETTTCSB--SCEEEEEE
T ss_pred EeCCCcEEEEECCCCCcc-------eEeec-CCccEEEEEECCCCCEEEEEeCCCeEEE---EECccCCC--cceeEEEe
Confidence 999999887554322111 01111 1122333333344445555555665443 34432210 11111111
Q ss_pred ccCCCCceEEEEEecCCCCCCCCCCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCC-CCeEEEEEEecCCCeEEEE
Q psy14505 628 FSLKNKEKITVILPLSNNKRDFPKNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSN-EDFLIGAALTDGSYDIMLF 706 (1619)
Q Consensus 628 l~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke-~D~l~~~~~~~~~d~lll~ 706 (1619)
. .....+..+... ++..++..+.+|.++--++.. |.....+.. .+.+..+........++..
T Consensus 140 ~--~h~~~v~~~~~~--------~~~~l~s~s~d~~i~~wd~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~l~sg 202 (340)
T 1got_B 140 A--GHTGYLSCCRFL--------DDNQIVTSSGDTTCALWDIET-------GQQTTTFTGHTGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp E--CCSSCEEEEEEE--------ETTEEEEEETTSCEEEEETTT-------TEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred c--CCCccEEEEEEC--------CCCcEEEEECCCcEEEEECCC-------CcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence 1 112234333222 233488899999999877643 222223332 2345444444444456666
Q ss_pred eCCceEEEEecccccccCCCCCCccceecCC-CCEEEEEEEecCCCCcEEEEEecCceeEEecccccccccccccceeee
Q psy14505 707 SDSGKAVRFNENSVRAMGRSARGVIGMRLEK-KQKVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIK 785 (1619)
Q Consensus 707 T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~-~e~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ik 785 (1619)
+.+|.+....... |.....+.. ...|.++...++ ...++..+.+|.++.-.+... .....
T Consensus 203 ~~d~~v~~wd~~~---------~~~~~~~~~h~~~v~~v~~~p~-~~~l~s~s~d~~v~iwd~~~~---------~~~~~ 263 (340)
T 1got_B 203 ACDASAKLWDVRE---------GMCRQTFTGHESDINAICFFPN-GNAFATGSDDATCRLFDLRAD---------QELMT 263 (340)
T ss_dssp ETTSCEEEEETTT---------CSEEEEECCCSSCEEEEEECTT-SSEEEEEETTSCEEEEETTTT---------EEEEE
T ss_pred eCCCcEEEEECCC---------CeeEEEEcCCcCCEEEEEEcCC-CCEEEEEcCCCcEEEEECCCC---------cEEEE
Confidence 6788877665432 222222322 234555444443 567778888898887665321 11222
Q ss_pred eccC--CCeEEEEEEecCCcEEEEEECCCeEEEEecC
Q psy14505 786 TNKR--NGKVVAATLVNRYHEIMLITTGGILIRTRVS 820 (1619)
Q Consensus 786 l~~~--~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~ 820 (1619)
+... ...+..+.....+..++..+.+|.+..++..
T Consensus 264 ~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~ 300 (340)
T 1got_B 264 YSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDAL 300 (340)
T ss_dssp ECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred EccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcc
Confidence 2110 1134444444445566677788888777754
No 304
>3twe_A Alpha4H; unknown function; HET: PGE; 1.36A {Synthetic} PDB: 3twf_A* 4g4m_A*
Probab=26.62 E-value=87 Score=21.35 Aligned_cols=23 Identities=13% Similarity=0.307 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Q psy14505 472 QKKIINKYENVIKKVIDLTDILS 494 (1619)
Q Consensus 472 ~~~l~~e~~~l~~~i~~l~~iL~ 494 (1619)
.++|.+|.+.|++++..|+.-|-
T Consensus 3 adelykeledlqerlrklrkklr 25 (27)
T 3twe_A 3 ADELYKELEDLQERLRKLRKKLR 25 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhc
Confidence 46777888888888887776553
No 305
>2ytx_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=26.18 E-value=69 Score=30.28 Aligned_cols=52 Identities=15% Similarity=0.201 Sum_probs=39.7
Q ss_pred CCeEEEEEEEEecCceEEEEecCCeEEEEEccccccccccCcCCCCEEEEEEE
Q psy14505 1516 GSLVNGIIKSIDTNKGAIIQLSNEVEGYLRISEEDNKHEKKLKIGENIDVLTV 1568 (1619)
Q Consensus 1516 G~~v~g~V~~i~~~~G~~V~l~~gv~G~i~~~~~~~~~~~~~~~Gq~V~~~Vl 1568 (1619)
.....|+|......||.+..-.++-.-|+|.+.+... ...+.+||.|.+.+.
T Consensus 16 ~~~~~G~Vkwf~KGfGFI~~ddg~~DvFvH~s~i~~~-~~~L~~G~~V~F~v~ 67 (97)
T 2ytx_A 16 QARCQGVVCAMKEAFGFIERGDVVKEIFFHYSEFKGD-LETLQPGDDVEFTIK 67 (97)
T ss_dssp CCCEEEEECCCCSSEEEEECSSSCCCEEEETTTCCSC-TTSCCSCCEEEEEEC
T ss_pred CcceeEEEEEEeCCceEEecCCCCceEEEEehHhccc-cCCCCCCCEEEEEEE
Confidence 5677898887755677664433357899999998654 578999999999995
No 306
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=25.93 E-value=6.6e+02 Score=27.18 Aligned_cols=210 Identities=11% Similarity=-0.011 Sum_probs=99.5
Q ss_pred cccccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCCC-CeEEEEEEee--CccEEEEEeeCceEEEEEcccC
Q psy14505 536 EDLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDE-DWINQLFIAN--THDYILCFSNYGRLYWLKVWQI 612 (1619)
Q Consensus 536 ~~li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~-D~~~~~~~~~--t~d~llifT~~Gkv~~i~v~el 612 (1619)
-..-++...+++.+.+|.|+--++..-... -.....+... ..+..+.... ....|+.-+.+|.+.-.. +
T Consensus 17 ~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd---~ 88 (351)
T 3f3f_A 17 VVYDFYGRHVATCSSDQHIKVFKLDKDTSN-----WELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWE---E 88 (351)
T ss_dssp EEECSSSSEEEEEETTSEEEEEEECSSSCC-----EEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE---E
T ss_pred EEEcCCCCEEEEeeCCCeEEEEECCCCCCc-----ceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEe---c
Confidence 344567778888899998887655421100 0001111222 2333333333 245666666777665444 3
Q ss_pred CCCCccCCC---ccceecccCCCCceEEEEEecCCCCCCCCC--CcEEEEEeCCceEEEeeCCCCcCCCCC----Cceee
Q psy14505 613 PQGSRNSRG---KPIINMFSLKNKEKITVILPLSNNKRDFPK--NNYVFMSTSLGIVKKTLLSNFSNPRKS----GIIAV 683 (1619)
Q Consensus 613 p~~~~~~~G---~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~--e~~~v~iT~~G~iKr~~~~~~~~~~r~----G~~~~ 683 (1619)
........+ .++..+- .....+..+... ++ ..+++..+.+|.++--++........- ....+
T Consensus 89 ~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~-------~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~ 159 (351)
T 3f3f_A 89 DPDQEECSGRRWNKLCTLN--DSKGSLYSVKFA-------PAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVL 159 (351)
T ss_dssp CTTSCTTSSCSEEEEEEEC--CCSSCEEEEEEC-------CGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESC
T ss_pred CCCcccccccCcceeeeec--ccCCceeEEEEc-------CCCCCcEEEEecCCCcEEEecCCChHHhcccccccccccc
Confidence 322111112 2222222 234456665443 44 678999999999999887654332210 00111
Q ss_pred ec---CCCCeEEEEEEecC---CCeEEEEeCCceEEEEecccccccCCCCCCccceecCC-CCEEEEEEEecCCC----C
Q psy14505 684 NL---SNEDFLIGAALTDG---SYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEK-KQKVIALLVSNNQK----Q 752 (1619)
Q Consensus 684 ~l---ke~D~l~~~~~~~~---~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~-~e~Iv~~~~~~~~~----~ 752 (1619)
.+ .....+..+..... ...++..+..|.++...... + .-.....+.. ...|.++...++ . .
T Consensus 160 ~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~----~---~~~~~~~~~~h~~~i~~~~~~p~-~~~~~~ 231 (351)
T 3f3f_A 160 SIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKD----G---KLHVAAKLPGHKSLIRSISWAPS-IGRWYQ 231 (351)
T ss_dssp SCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTT----S---CEEEEEECCCCCSCEEEEEECCC-SSCSSE
T ss_pred ccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCC----C---ceeeeeecCCCCcceeEEEECCC-CCCcce
Confidence 11 11222333333322 45566666666654443211 0 0011222322 234555444333 2 4
Q ss_pred cEEEEEecCceeEEeccc
Q psy14505 753 SVLTATENGYGKRTLIKE 770 (1619)
Q Consensus 753 ~ll~~T~~G~~Kr~~l~e 770 (1619)
.++..+.+|.++.-.+..
T Consensus 232 ~l~s~~~dg~i~iwd~~~ 249 (351)
T 3f3f_A 232 LIATGCKDGRIRIFKITE 249 (351)
T ss_dssp EEEEEETTSCEEEEEEEE
T ss_pred EEEEEcCCCeEEEEeCCC
Confidence 566677778887766543
No 307
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=25.65 E-value=7.2e+02 Score=27.52 Aligned_cols=247 Identities=12% Similarity=-0.030 Sum_probs=121.2
Q ss_pred ccccCcceEEEEccCccEEeccCchhhhcccCCCCccccccCCC-CeEEEEEEeeC--ccEEEEEeeCceEEEEEcccCC
Q psy14505 537 DLIASQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTKDE-DWINQLFIANT--HDYILCFSNYGRLYWLKVWQIP 613 (1619)
Q Consensus 537 ~li~~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k~~-D~~~~~~~~~t--~d~llifT~~Gkv~~i~v~elp 613 (1619)
..-++...+++.+.+|.|+--.+..-. +.....+... +.+..+..... ...|+.-+.+|.++... +.
T Consensus 18 ~~s~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd---~~ 87 (379)
T 3jrp_A 18 VLDYYGKRLATCSSDKTIKIFEVEGET-------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWK---EE 87 (379)
T ss_dssp EECSSSSEEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEE---EE
T ss_pred EEcCCCCEEEEEECCCcEEEEecCCCc-------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEE---cC
Confidence 344567788888889988876554100 1111122222 23333333333 45666666677665443 32
Q ss_pred CCCccCCCccceecccCCCCceEEEEEecCCCCCCCCC--CcEEEEEeCCceEEEeeCCCCcCCCCCCceeeec-CCCCe
Q psy14505 614 QGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPK--NNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNL-SNEDF 690 (1619)
Q Consensus 614 ~~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~--e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~l-ke~D~ 690 (1619)
... -.++..+. .....+..+.-. ++ ..+++..+.+|.++...+..-.... ...+ .....
T Consensus 88 ~~~----~~~~~~~~--~~~~~v~~~~~~-------~~~~~~~l~~~~~d~~i~v~d~~~~~~~~-----~~~~~~~~~~ 149 (379)
T 3jrp_A 88 NGR----WSQIAVHA--VHSASVNSVQWA-------PHEYGPLLLVASSDGKVSVVEFKENGTTS-----PIIIDAHAIG 149 (379)
T ss_dssp TTE----EEEEEEEC--CCSSCEEEEEEC-------CGGGCSEEEEEETTSEEEEEECCTTSCCC-----EEEEECCTTC
T ss_pred CCc----eeEeeeec--CCCcceEEEEeC-------CCCCCCEEEEecCCCcEEEEecCCCCcee-----eEEecCCCCc
Confidence 221 01222222 123445555433 44 6789999999999998875432111 1122 22334
Q ss_pred EEEEEEec-------------CCCeEEEEeCCceEEEEecccccccCCCCCCccceecCC-CCEEEEEEEecCC--CCcE
Q psy14505 691 LIGAALTD-------------GSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEK-KQKVIALLVSNNQ--KQSV 754 (1619)
Q Consensus 691 l~~~~~~~-------------~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~-~e~Iv~~~~~~~~--~~~l 754 (1619)
+..+.... ....++..+.+|.+..+.... ... .......+.. ...|.++...++. ...+
T Consensus 150 v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~---~~~--~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l 224 (379)
T 3jrp_A 150 VNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNS---DAQ--TYVLESTLEGHSDWVRDVAWSPTVLLRSYL 224 (379)
T ss_dssp EEEEEECCCC----------CTTCEEEEEETTSCEEEEEEET---TTT--EEEEEEEECCCSSCEEEEEECCCCSSSEEE
T ss_pred eEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecC---CCc--ceeeEEEEecccCcEeEEEECCCCCCCCeE
Confidence 44444443 245677777888877765531 100 1111122332 2334444333321 4566
Q ss_pred EEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEecC
Q psy14505 755 LTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRVS 820 (1619)
Q Consensus 755 l~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~~ 820 (1619)
+..+.+|.++.-.+..-... .-..........+.+..+........++..+.+|.+..+..+
T Consensus 225 ~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~ 286 (379)
T 3jrp_A 225 ASVSQDRTCIIWTQDNEQGP----WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 286 (379)
T ss_dssp EEEETTSCEEEEEESSTTSC----CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEE
T ss_pred EEEeCCCEEEEEeCCCCCcc----ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCC
Confidence 77777888876655432100 011112221123345444444444556667788877777654
No 308
>3i2z_B RNA chaperone, negative regulator of CSPA transcription; beta barrel, DNA binding protein/transcription, cytoplasm, gene regulation; 1.10A {Salmonella typhimurium} SCOP: b.40.4.5 PDB: 2l15_A 1mjc_A 3mef_A
Probab=25.41 E-value=2e+02 Score=25.36 Aligned_cols=50 Identities=26% Similarity=0.439 Sum_probs=35.7
Q ss_pred eEEEEEEEEcC---CeEEEEEcCC-EEEEEeccccCccccCCCccccccCCCEEEEEEEE
Q psy14505 1344 RLLGKVTNLTD---YGAFVEIEKG-IEGLVHISEMDWINKNVTPSKIVQLNDTVEIMILE 1399 (1619)
Q Consensus 1344 iv~g~V~~v~~---~G~fV~l~~g-v~GlV~~sels~~~~~~~~~~~~~vG~~V~vrVl~ 1399 (1619)
...|+|+...+ || |+.-.++ -+-|+|.+.+.. .....+.+||.|...+..
T Consensus 5 ~~~G~Vk~fn~~kGfG-FI~~~~g~~dvFvH~s~i~~-----~g~~~l~~G~~V~f~~~~ 58 (71)
T 3i2z_B 5 KIKGNVKWFNESKGFG-FITPEDGSKDVFVHFSAIQT-----NGFKTLAEGQRVEFEITN 58 (71)
T ss_dssp CEEEEEEEEETTTTEE-EEEETTCCCCEEEEGGGBCC-----SSCCCCCTTCEEEEEEEE
T ss_pred cccEEEEEEECCCCcE-EEecCCCCccEEEEhHHccc-----ccCcCCCCCCEEEEEEEE
Confidence 46799998853 45 4555444 899999999953 123457899999998754
No 309
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=25.09 E-value=1.5e+02 Score=21.14 Aligned_cols=21 Identities=14% Similarity=0.132 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy14505 471 EQKKIINKYENVIKKVIDLTD 491 (1619)
Q Consensus 471 e~~~l~~e~~~l~~~i~~l~~ 491 (1619)
|+..|.+|+..|.++|..|+-
T Consensus 3 eiaalkqeiaalkkeiaalkf 23 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKF 23 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777777766554
No 310
>3m48_A General control protein GCN4; leucine zipper, synthetic peptide, alpha helix, activa amino-acid biosynthesis, DNA-binding, nucleus; 1.45A {Synthetic} PDB: 3i1g_A 2ahp_A* 2o7h_A
Probab=23.95 E-value=99 Score=23.07 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14505 471 EQKKIINKYENVIKKVIDLTDILSN 495 (1619)
Q Consensus 471 e~~~l~~e~~~l~~~i~~l~~iL~~ 495 (1619)
.+++|..+..+|+.++..|+++|..
T Consensus 8 kVEeLl~~n~~Le~EV~RLk~Ll~~ 32 (33)
T 3m48_A 8 KVEELLSKNWNLENEVARLKKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhhc
Confidence 4688999999999999999999875
No 311
>3a0j_A Cold shock protein; OB-fold, cytoplasm, transcription, structural genomics, NPPSFA; 1.65A {Thermus thermophilus}
Probab=23.61 E-value=2.3e+02 Score=25.08 Aligned_cols=52 Identities=13% Similarity=0.172 Sum_probs=37.5
Q ss_pred EEEEEEEEecC--ceEEEEecCCeEEEEEccccccccccCcCCCCEEEEEEEEEe
Q psy14505 1519 VNGIIKSIDTN--KGAIIQLSNEVEGYLRISEEDNKHEKKLKIGENIDVLTVLID 1571 (1619)
Q Consensus 1519 v~g~V~~i~~~--~G~~V~l~~gv~G~i~~~~~~~~~~~~~~~Gq~V~~~Vl~vd 1571 (1619)
.+|+|+.-..+ ||. +.-.+|-.-|+|.+.+.......+.+||.|.+.+..-+
T Consensus 2 ~~G~Vk~fn~~kGfGF-I~~~~g~dvFvH~s~i~~~g~~~l~~G~~V~f~~~~~~ 55 (73)
T 3a0j_A 2 QKGRVKWFNAEKGYGF-IEREGDTDVFVHYTAINAKGFRTLNEGDIVTFDVEPGR 55 (73)
T ss_dssp EEEEEEEEETTTTEEE-EECTTSCCEEEEGGGBCSSSCSSCCTTCEEEEEEECCS
T ss_pred CCEEEEEEECCCCEEE-EecCCCCcEEEEhhhccccCCCCCCCCCEEEEEEEECC
Confidence 36888877533 544 44455777899999987554468999999999986443
No 312
>2yty_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=22.99 E-value=1.7e+02 Score=27.09 Aligned_cols=53 Identities=25% Similarity=0.383 Sum_probs=41.8
Q ss_pred CCCeEEEEEEEEeccEEEEEeCC-CeEEEEecccccccCCCccccCCCEEEEEEEE
Q psy14505 1085 SGEVISAEVIGLDRNFVIINADL-KSEAFIPIEEFKNDNGELEVKIGDFVSVAIES 1139 (1619)
Q Consensus 1085 ~G~iv~G~V~~v~~~gv~V~lg~-~~~Gfi~~~e~~~~~~~~~~kvG~~v~~~V~~ 1139 (1619)
.++...|+|...++.+=++.-.. +-+-|+|.+.+... ...+++||.|.+.+..
T Consensus 15 ~~~~~~G~Vk~f~kGfGFI~~ddgg~DvFvH~S~i~~~--~~~L~~G~~V~F~~~~ 68 (88)
T 2yty_A 15 NSKRLLGYVATLKDNFGFIETANHDKEIFFHYSEFSGD--VDSLELGDMVEYSLSK 68 (88)
T ss_dssp SCCCEEEEEEEECSSEEEEECSSSSCEEEEETTTCCSC--TTTCCTTCEEEECCCC
T ss_pred CCCceeEEEEEEECCccEEecCCCCceEEEEEhhhccc--cCcCCCCCEEEEEEEE
Confidence 57899999999987665666544 57899999999754 2468999999988743
No 313
>2wq1_A General control protein GCN4; TAA, nucleus, coiled coil, DNA-binding, protein export, ION coordination, polar core residues; 1.08A {Saccharomyces cerevisiae} PDB: 2wq0_A 2wq2_A 2wq3_A 2wpz_A 2wpy_A 1ij0_A 1ij1_A 1gcm_A 1rb5_A 1rb6_A 1rb1_A 1rb4_A 1swi_A 3k7z_A 1zii_A 1zij_A 1ij2_A 1ij3_A 1zil_A 1zim_A ...
Probab=22.86 E-value=1.1e+02 Score=22.78 Aligned_cols=25 Identities=8% Similarity=0.100 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Q psy14505 471 EQKKIINKYENVIKKVIDLTDILSN 495 (1619)
Q Consensus 471 e~~~l~~e~~~l~~~i~~l~~iL~~ 495 (1619)
.+++|..+...|+.++..|+.+|.+
T Consensus 8 KVEell~~~~~le~EV~Rl~~ll~~ 32 (33)
T 2wq1_A 8 KIEENTSKIYHNTNEIARNTKLVGE 32 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcC
Confidence 4678899999999999999998875
No 314
>4gfh_A DNA topoisomerase 2; topoisomerase, protein-DNA complex, DNA supercoiling, DNA replication; HET: DNA PTR TSP ANP; 4.41A {Saccharomyces cerevisiae}
Probab=22.66 E-value=94 Score=42.42 Aligned_cols=58 Identities=5% Similarity=-0.083 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhchhHHHH--HHHcCCCHHHHHHHHHhhcCCCC
Q psy14505 358 RKEVIKRRTIFE-------LRKAREYAHILEGLTIALTNIDNFIQ--IIRSTSTPQEAKNKIIESTWNLP 418 (1619)
Q Consensus 358 R~~~~~rR~~~~-------l~k~~~r~~ileg~~~a~~~id~vi~--iir~s~~~~~a~~~L~~~~~~~~ 418 (1619)
=.+++.-|.++- |++++.+++++++.++.+ ..+|+ |.-..+++++..+.|.+.+|++.
T Consensus 994 L~~f~~~R~e~~~rRk~~~l~~l~~~l~k~~~r~~fi---~~vi~~~L~i~~~~~devI~~Lr~~~~~~~ 1060 (1177)
T 4gfh_A 994 LSEFYYVRLEYYQKRKDHMSERLQWEVEKYSFQVKFI---KMIIEKELTVTNKPRNAIIQELENLGFPRF 1060 (1177)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHTTSCCCSSSCHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHhhcCeEEEecCCHHHHHHHHHHCCCccc
Confidence 356777777774 445888899999988754 34443 34466788999999999877654
No 315
>3dlm_A Histone-lysine N-methyltransferase setdb1; setdb1_human, structural genomics, structural genomics consortium, SGC, alternative splicing; 1.77A {Homo sapiens}
Probab=22.59 E-value=7.4e+02 Score=26.63 Aligned_cols=118 Identities=17% Similarity=0.187 Sum_probs=79.4
Q ss_pred ceEEEEEEEEEecc--e--EEEeeCCCeEEEEeCCCCCCCCCccccccCCCCCCEEEEEEEEeecCCCeEEEeeecCcCC
Q psy14505 1429 GEKIKGIIKSITDF--G--IFIGLDGNIDGLIHLSDLSWTDPGEEIIRNFKKGDEIEAIILSIDVEKERISLGIKQLEGD 1504 (1619)
Q Consensus 1429 G~~v~G~V~~i~~~--G--vfV~~~~~v~Glv~~sels~~~~~~~~~~~f~vGq~V~~~Vl~vd~e~~ri~LSlK~~~~~ 1504 (1619)
+.-+.|+|+.|+.. | .-|.|.++-.-+++.++++-+ ...+...+.+|-.|-|.-.+.+ +.
T Consensus 22 ~~W~rg~v~~I~~~~~g~~YkVkF~~~g~~ivs~~hiA~~--~~p~~~~l~vG~RVVA~~~~~~----~~---------- 85 (213)
T 3dlm_A 22 KTWHKGTLIAIQTVGPGKKYKVKFDNKGKSLLSGNHIAYD--YHPPADKLYVGSRVVAKYKDGN----QV---------- 85 (213)
T ss_dssp SBEEEEEEEEEEEETTEEEEEEEESSSCEEEECGGGEEES--SCCCGGGCCTTCEEEEEEECSS----CE----------
T ss_pred CcEEEEEEEEEEECCCCeEEEEEEcCCCCEEeecceEEEe--cCCCccEEeEEEEEEEEecCCC----Cc----------
Confidence 56678889998774 4 478888666778998888742 2334557999999888775321 10
Q ss_pred CcccccccCCCCCeEEEEEEEEe---cCceEEEEecCCeEEEEEcccc--------------cc---------------c
Q psy14505 1505 PFNNYVNINDKGSLVNGIIKSID---TNKGAIIQLSNEVEGYLRISEE--------------DN---------------K 1552 (1619)
Q Consensus 1505 p~~~~~~~~~~G~~v~g~V~~i~---~~~G~~V~l~~gv~G~i~~~~~--------------~~---------------~ 1552 (1619)
....|.|...- ..+-..|.|+||...+++..++ .+ +
T Consensus 86 ------------~fY~GiVaE~p~~~N~~RyLVFFDDG~~~Yv~~~~V~~Vc~~s~~vW~di~~~~~r~FIk~YL~~yP~ 153 (213)
T 3dlm_A 86 ------------WLYAGIVAETPNVKNKLRFLIFFDDGYASYVTQSELYPICRPLKKTWEDIEDISCRDFIEEYVTAYPN 153 (213)
T ss_dssp ------------EEEEEEEEECCCTTTTSCEEEEETTSCEEEECGGGEEEBSSCCSSGGGGCSCHHHHHHHHHHHHHTTC
T ss_pred ------------ceeeeEEEECCccCCCceEEEEEeCCCcceecCceEEEEEEcccchhhhcCcchhHHHHHHHHHhCCC
Confidence 12345554441 2345788999999999998764 00 0
Q ss_pred -cccCcCCCCEE---------EEEEEEEeCCC
Q psy14505 1553 -HEKKLKIGENI---------DVLTVLIDHKT 1574 (1619)
Q Consensus 1553 -~~~~~~~Gq~V---------~~~Vl~vd~~~ 1574 (1619)
+.-.+++||.+ .|+|+.+|-+=
T Consensus 154 rpmv~~~~GQ~i~~E~~g~w~~~~V~~vD~SL 185 (213)
T 3dlm_A 154 RPMVLLKSGQLIKTEWEGTWWKSRVEEVDGSL 185 (213)
T ss_dssp CCCCCCCTTCEEEEEETTEEEEEEEEEEETTE
T ss_pred CceEEcCCCCEEEEEecCcEEEEEEEEEccee
Confidence 11578999998 57888888763
No 316
>2ytv_A Cold shock domain-containing protein E1; cell-free protein synthesis, beta-barrel, translational REGU RNA chaperone, RNA/DNA binding, QB fold; NMR {Homo sapiens}
Probab=22.59 E-value=49 Score=30.03 Aligned_cols=51 Identities=14% Similarity=0.271 Sum_probs=38.2
Q ss_pred CeEEEEEEEEecCceEEEEecC-CeEEEEEccccccccccCcCCCCEEEEEEEE
Q psy14505 1517 SLVNGIIKSIDTNKGAIIQLSN-EVEGYLRISEEDNKHEKKLKIGENIDVLTVL 1569 (1619)
Q Consensus 1517 ~~v~g~V~~i~~~~G~~V~l~~-gv~G~i~~~~~~~~~~~~~~~Gq~V~~~Vl~ 1569 (1619)
....|+|......||.+..-.+ +-.-|+|.+.+. .. ..+++||.|.+.+..
T Consensus 7 ~~~~G~V~~~~KGfGFI~~ddg~g~DvFvH~s~i~-~g-~~l~~G~~V~F~v~~ 58 (79)
T 2ytv_A 7 GLRRATVECVKDQFGFINYEVGDSKKLFFHVKEVQ-DG-IELQAGDEVEFSVIL 58 (79)
T ss_dssp SBCCEEEEECCSSEEEESCCCSSSSSEEEETTTCC-SS-CCCCTTCEEECBCEE
T ss_pred CcccEEEEEecccceeEeCCCCCCCcEEEEhHHcC-CC-CcCCCCCEEEEEEEE
Confidence 3456888888667776644333 378999999987 33 789999999998864
No 317
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=21.70 E-value=9.3e+02 Score=27.45 Aligned_cols=102 Identities=7% Similarity=0.086 Sum_probs=50.2
Q ss_pred CcceEEEEccCccEEeccCchhhhcccCCCCccccccC-CCCeEEEEEEeeCccEEEEEe-eCceEEEEEcccCCCCCcc
Q psy14505 541 SQDMVITLSNLGYIKSQPISEYRAQKRGGRGKKAMMTK-DEDWINQLFIANTHDYILCFS-NYGRLYWLKVWQIPQGSRN 618 (1619)
Q Consensus 541 ~e~~~v~ls~~GyiKr~~~~~~~~~~r~g~g~~~~~~k-~~D~~~~~~~~~t~d~llifT-~~Gkv~~i~v~elp~~~~~ 618 (1619)
+..++++.+.+|.++..+++..+.. ..+. .+..+..+........+++.. ..|.++... +.
T Consensus 180 ~~~~~~s~~~d~~v~~~d~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d---~~----- 242 (433)
T 3bws_A 180 HNELWVSQMQANAVHVFDLKTLAYK---------ATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVID---RK----- 242 (433)
T ss_dssp GTEEEEEEGGGTEEEEEETTTCCEE---------EEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEE---TT-----
T ss_pred CCEEEEEECCCCEEEEEECCCceEE---------EEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEE---CC-----
Confidence 4556777778888888766432111 1111 123333333333334443433 356655544 32
Q ss_pred CCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEe--------CCceEEEeeCC
Q psy14505 619 SRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMST--------SLGIVKKTLLS 670 (1619)
Q Consensus 619 ~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT--------~~G~iKr~~~~ 670 (1619)
.|..+..+ ..+..+..+... ++...+++.+ .+|.++..++.
T Consensus 243 -~~~~~~~~---~~~~~~~~~~~~-------~~g~~l~~~~~~~~~~~~~dg~i~~~d~~ 291 (433)
T 3bws_A 243 -TKLEIRKT---DKIGLPRGLLLS-------KDGKELYIAQFSASNQESGGGRLGIYSMD 291 (433)
T ss_dssp -TTEEEEEC---CCCSEEEEEEEC-------TTSSEEEEEEEESCTTCSCCEEEEEEETT
T ss_pred -CCcEEEEe---cCCCCceEEEEc-------CCCCEEEEEECCCCccccCCCeEEEEECC
Confidence 12333222 223334444332 4556666666 47888887764
No 318
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=21.62 E-value=3.9e+02 Score=27.11 Aligned_cols=39 Identities=21% Similarity=0.243 Sum_probs=29.2
Q ss_pred cEEEecCCcCCCCchhHHHHHHHh----C--CEEechhhHHHHHH
Q psy14505 860 PVITIDGPTASGKGTVAQLVASKL----G--FHYLDSGALYRLVT 898 (1619)
Q Consensus 860 ~iIti~g~~gsGK~~~~~~la~~l----~--~~~~dtg~~yr~~~ 898 (1619)
..+.+-|++|+||++.++.++..+ | +.|++...+...+.
T Consensus 39 ~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~~~ 83 (180)
T 3ec2_A 39 KGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFRLK 83 (180)
T ss_dssp CEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH
Confidence 357778999999999999998766 4 45677666655444
No 319
>2a26_A Calcyclin-binding protein; helical hairpin, dimerization, apoptosis; HET: CXS; 1.20A {Homo sapiens} SCOP: a.2.16.1
Probab=21.54 E-value=1.5e+02 Score=24.52 Aligned_cols=35 Identities=23% Similarity=0.374 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHh
Q psy14505 480 ENVIKKVIDLTDIL--SNSKRIIEIITDELNIIKNKY 514 (1619)
Q Consensus 480 ~~l~~~i~~l~~iL--~~~~~~~~~i~~el~~ik~~f 514 (1619)
++|+..+++++.+| +++.+...++..|+..+..+.
T Consensus 7 eeL~~DL~El~~Ll~~AkR~rVk~~L~~ei~~lE~ei 43 (50)
T 2a26_A 7 EELQKDLEEVKVLLEKATRKRVRDALTAEKSKIETEI 43 (50)
T ss_dssp HHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHH
Confidence 46666777777776 778889999999999988654
No 320
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=21.33 E-value=1.3e+03 Score=29.12 Aligned_cols=153 Identities=7% Similarity=-0.082 Sum_probs=83.5
Q ss_pred CcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecC-CCCeEEEEEEecC--CCeEEEEeCCceEEEEecccccccCCCCC
Q psy14505 652 NNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLS-NEDFLIGAALTDG--SYDIMLFSDSGKAVRFNENSVRAMGRSAR 728 (1619)
Q Consensus 652 e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lk-e~D~l~~~~~~~~--~d~lll~T~~G~~~~~~~~eIp~~~r~a~ 728 (1619)
..+++..+.+|.++--+...-.. .....+. ..+.+..+..... ...++..+.+|.+..+....-..
T Consensus 67 ~~~l~s~s~Dg~I~vwd~~~~~~-----~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~------ 135 (753)
T 3jro_A 67 GTILASCSYDGKVLIWKEENGRW-----SQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGT------ 135 (753)
T ss_dssp CSEEEEEETTSCEEEEEEETTEE-----EEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSC------
T ss_pred CCEEEEEeCCCeEEEEECCCCcc-----cccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCC------
Confidence 67899999999999877643210 0112222 2345555555444 56788888889888776542110
Q ss_pred Cccceec-CCCCEEEEEEEecC------------CCCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEE
Q psy14505 729 GVIGMRL-EKKQKVIALLVSNN------------QKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVA 795 (1619)
Q Consensus 729 Gv~~i~L-~~~e~Iv~~~~~~~------------~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~ 795 (1619)
.....+ .....|..+...+. ....++..+.+|.++.-.+..-. . .+.....+....+.+.+
T Consensus 136 -~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~---~--~~~~~~~~~~h~~~V~~ 209 (753)
T 3jro_A 136 -TSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDA---Q--TYVLESTLEGHSDWVRD 209 (753)
T ss_dssp -CCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTT---T--EEEEEEEECCCSSCEEE
T ss_pred -cceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCc---c--cceeeeeecCCCCcEEE
Confidence 111111 12233444443331 24678888889988876653211 1 11222333332344555
Q ss_pred EEEecC---CcEEEEEECCCeEEEEecCc
Q psy14505 796 ATLVNR---YHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 796 ~~~~~~---~~~i~l~T~~g~~lrf~~~e 821 (1619)
+..... ...++..+.+|.+..++...
T Consensus 210 l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~ 238 (753)
T 3jro_A 210 VAWSPTVLLRSYLASVSQDRTCIIWTQDN 238 (753)
T ss_dssp EEECCCCSSSEEEEEEESSSCEEEEEESS
T ss_pred EEeccCCCCCCEEEEEecCCEEEEecCCC
Confidence 544444 35566677788888777654
No 321
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=20.50 E-value=9.3e+02 Score=26.97 Aligned_cols=159 Identities=11% Similarity=0.023 Sum_probs=91.7
Q ss_pred CceEEEEEecCCCCCCCC-CCcEEEEEeCCceEEEeeCCCCcCCCCCCceeeecCC--CCeEEEEEEecCCCeEEEEeCC
Q psy14505 633 KEKITVILPLSNNKRDFP-KNNYVFMSTSLGIVKKTLLSNFSNPRKSGIIAVNLSN--EDFLIGAALTDGSYDIMLFSDS 709 (1619)
Q Consensus 633 ~e~i~~i~~~~~~~~~~~-~e~~~v~iT~~G~iKr~~~~~~~~~~r~G~~~~~lke--~D~l~~~~~~~~~d~lll~T~~ 709 (1619)
...+..+.-. + +..+++..+.+|.++--++..- ....+.... .+.+..+........++..+.+
T Consensus 118 ~~~v~~~~~~-------~~~~~~l~s~~~d~~i~iwd~~~~------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 184 (383)
T 3ei3_B 118 GDAITGMKFN-------QFNTNQLFVSSIRGATTLRDFSGS------VIQVFAKTDSWDYWYCCVDVSVSRQMLATGDST 184 (383)
T ss_dssp TCBEEEEEEE-------TTEEEEEEEEETTTEEEEEETTSC------EEEEEECCCCSSCCEEEEEEETTTTEEEEEETT
T ss_pred CCceeEEEeC-------CCCCCEEEEEeCCCEEEEEECCCC------ceEEEeccCCCCCCeEEEEECCCCCEEEEECCC
Confidence 4456555433 4 4578899999999998877521 111111111 2456666555566677778888
Q ss_pred ceEEEEecccccccCCCCCCccceecCC-CCEEEEEEEecCCCC-cEEEEEecCceeEEecccccccccccccceeeeec
Q psy14505 710 GKAVRFNENSVRAMGRSARGVIGMRLEK-KQKVIALLVSNNQKQ-SVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTN 787 (1619)
Q Consensus 710 G~~~~~~~~eIp~~~r~a~Gv~~i~L~~-~e~Iv~~~~~~~~~~-~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~ 787 (1619)
|.+..+... |.....+.. ...|.++...++ .. .++..+.+|.++.-.+...... +.....+.
T Consensus 185 ~~i~i~d~~----------~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~ 248 (383)
T 3ei3_B 185 GRLLLLGLD----------GHEIFKEKLHKAKVTHAEFNPR-CDWLMATSSVDATVKLWDLRNIKDK-----NSYIAEMP 248 (383)
T ss_dssp SEEEEEETT----------SCEEEEEECSSSCEEEEEECSS-CTTEEEEEETTSEEEEEEGGGCCST-----TCEEEEEE
T ss_pred CCEEEEECC----------CCEEEEeccCCCcEEEEEECCC-CCCEEEEEeCCCEEEEEeCCCCCcc-----cceEEEec
Confidence 988877752 112223322 234555544443 34 5667778888887766543211 22222232
Q ss_pred cCCCeEEEEEEec-CCcEEEEEECCCeEEEEecCc
Q psy14505 788 KRNGKVVAATLVN-RYHEIMLITTGGILIRTRVSE 821 (1619)
Q Consensus 788 ~~~d~Lv~~~~~~-~~~~i~l~T~~g~~lrf~~~e 821 (1619)
..+.+.++.... ....++..+.+|.+..++...
T Consensus 249 -~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~ 282 (383)
T 3ei3_B 249 -HEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYD 282 (383)
T ss_dssp -CSSCEEEEEECTTTSCEEEEEESSSEEEEEETTB
T ss_pred -CCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCC
Confidence 245566655554 456677778888888888764
No 322
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=20.34 E-value=8.4e+02 Score=26.42 Aligned_cols=201 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred CCeEEEEEEeeCccEEEEEeeCceEEEEEcccCCCCCccCCCccceecccCCCCceEEEEEecCCCCCCCCCCcEEEEEe
Q psy14505 580 EDWINQLFIANTHDYILCFSNYGRLYWLKVWQIPQGSRNSRGKPIINMFSLKNKEKITVILPLSNNKRDFPKNNYVFMST 659 (1619)
Q Consensus 580 ~D~~~~~~~~~t~d~llifT~~Gkv~~i~v~elp~~~~~~~G~~i~~ll~l~~~e~i~~i~~~~~~~~~~~~e~~~v~iT 659 (1619)
.+.+..+....+...|+.-+.+|.+.-....+ |.....+- .....+..+.-. ++..+++..+
T Consensus 23 ~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~---------~~~~~~~~--~h~~~v~~~~~~-------~~~~~l~s~~ 84 (312)
T 4ery_A 23 TKAVSSVKFSPNGEWLASSSADKLIKIWGAYD---------GKFEKTIS--GHKLGISDVAWS-------SDSNLLVSAS 84 (312)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTT---------CCEEEEEC--CCSSCEEEEEEC-------TTSSEEEEEE
T ss_pred CCcEEEEEECCCCCEEEEeeCCCeEEEEeCCC---------cccchhhc--cCCCceEEEEEc-------CCCCEEEEEC
Q ss_pred CCceEEEeeCCCCcCCCCCCceeeecCCCCeEEEEEEecCCCeEEEEeCCceEEEEecccccccCCCCCCccceecCCCC
Q psy14505 660 SLGIVKKTLLSNFSNPRKSGIIAVNLSNEDFLIGAALTDGSYDIMLFSDSGKAVRFNENSVRAMGRSARGVIGMRLEKKQ 739 (1619)
Q Consensus 660 ~~G~iKr~~~~~~~~~~r~G~~~~~lke~D~l~~~~~~~~~d~lll~T~~G~~~~~~~~eIp~~~r~a~Gv~~i~L~~~e 739 (1619)
.+|.++--+...-.... .-....+.+..+........++..+.+|.+..+.... |.....+....
T Consensus 85 ~d~~i~vwd~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~---------~~~~~~~~~~~ 149 (312)
T 4ery_A 85 DDKTLKIWDVSSGKCLK------TLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKT---------GKCLKTLPAHS 149 (312)
T ss_dssp TTSEEEEEETTTCCEEE------EEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTT---------CCEEEEECCCS
T ss_pred CCCEEEEEECCCCcEEE------EEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CEEEEEecCCC
Q ss_pred EEEEEEEecCCCCcEEEEEecCceeEEecccccccccccccceeeeeccCCCeEEEEEEecCCcEEEEEECCCeEEEEec
Q psy14505 740 KVIALLVSNNQKQSVLTATENGYGKRTLIKEYTKHNRGTKGIISIKTNKRNGKVVAATLVNRYHEIMLITTGGILIRTRV 819 (1619)
Q Consensus 740 ~Iv~~~~~~~~~~~ll~~T~~G~~Kr~~l~e~~~~~R~~kG~~~ikl~~~~d~Lv~~~~~~~~~~i~l~T~~g~~lrf~~ 819 (1619)
.-+..+...+....++..+.+|.++.-.+ +.++-...+.... ...+..+........++..+.+|.+..++.
T Consensus 150 ~~v~~~~~~~~~~~l~~~~~d~~i~~wd~-------~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~ 221 (312)
T 4ery_A 150 DPVSAVHFNRDGSLIVSSSYDGLCRIWDT-------ASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAATLDNTLKLWDY 221 (312)
T ss_dssp SCEEEEEECTTSSEEEEEETTSCEEEEET-------TTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEETTTEEEEEET
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEEC-------CCCceeeEEeccC-CCceEEEEECCCCCEEEEEcCCCeEEEEEC
Q ss_pred Cc
Q psy14505 820 SE 821 (1619)
Q Consensus 820 ~e 821 (1619)
..
T Consensus 222 ~~ 223 (312)
T 4ery_A 222 SK 223 (312)
T ss_dssp TT
T ss_pred CC
No 323
>1g6p_A Cold shock protein TMCSP; greek-KEY, beta barrel, OB-fold, structural genomics; NMR {Thermotoga maritima} SCOP: b.40.4.5
Probab=20.30 E-value=97 Score=26.94 Aligned_cols=48 Identities=27% Similarity=0.384 Sum_probs=0.0
Q ss_pred EEEEEEEEc-CCeE-EEEEcCCEEEEEeccccCccccCCCccccccCCCEEEEEE
Q psy14505 1345 LLGKVTNLT-DYGA-FVEIEKGIEGLVHISEMDWINKNVTPSKIVQLNDTVEIMI 1397 (1619)
Q Consensus 1345 v~g~V~~v~-~~G~-fV~l~~gv~GlV~~sels~~~~~~~~~~~~~vG~~V~vrV 1397 (1619)
+.|+|+... ..|. |+.-.++-+-|+|.+.+ .......+++||.|...+
T Consensus 1 m~G~Vk~fn~~kGfGFI~~~~g~dvFvH~s~i-----~~~g~~~l~~G~~V~f~~ 50 (66)
T 1g6p_A 1 MRGKVKWFDSKKGYGFITKDEGGDVFVHWSAI-----EMEGFKTLKEGQVVEFEI 50 (66)
T ss_dssp CCEEEEEEETTTTEEEEEETTSCBCBBCSSSS-----CCSSCCCCCSSSEEEEEE
T ss_pred CcEEEEEEECCCCEEEEecCCCceEEEEhHHc-----cccCCCCCCCCCEEEEEE
Done!